BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (898 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] gi|254039868|gb|ACT56664.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 898 Score = 1855 bits (4806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 898/898 (100%), Positives = 898/898 (100%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA Sbjct: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL Sbjct: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG Sbjct: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK Sbjct: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV Sbjct: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK Sbjct: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ Sbjct: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP Sbjct: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR Sbjct: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI Sbjct: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI Sbjct: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI Sbjct: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ Sbjct: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI Sbjct: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK Sbjct: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 >gi|315122762|ref|YP_004063251.1| alanyl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496164|gb|ADR52763.1| alanyl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 906 Score = 1380 bits (3572), Expect = 0.0, Method: Compositional matrix adjust. Identities = 661/901 (73%), Positives = 776/901 (86%), Gaps = 4/901 (0%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M N+ SIR TFL+FFQK H++L SSSLIP NDPTLMFTN+GMV FKNIFT QEK Y+ Sbjct: 1 MRNLGSIRKTFLDFFQKREHKILDSSSLIPHNDPTLMFTNAGMVQFKNIFTSQEKRSYKT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKCVRAGGKHNDLDNVGRT RHHTFFEMLGNFSFG YFKERAI+LAW+LLTKEFD+ Sbjct: 61 AATVQKCVRAGGKHNDLDNVGRTTRHHTFFEMLGNFSFGDYFKERAIKLAWELLTKEFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RR+ +TVYD DEEAF LWKKISGL ++KIIR+ DNFWSMA+TGPCGPCSEIFFDQG Sbjct: 121 DCRRIVVTVYDGDEEAFNLWKKISGLPSNKIIRVAGKDNFWSMADTGPCGPCSEIFFDQG 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 E GGLPGS+E G+RY+EIWNLVFMQFEQ++++ER ILP MSIDTGMGLER++ VLQ K Sbjct: 181 EGFLGGLPGSAEAGDRYLEIWNLVFMQFEQKSQKERCILPSMSIDTGMGLERISAVLQGK 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 T+NYDIDLFK LIQASEQ+TG+KY+G++I+NHRVIVDHLRSSSFLIADGILP NEGRGYV Sbjct: 241 TDNYDIDLFKTLIQASEQITGVKYKGDDIINHRVIVDHLRSSSFLIADGILPTNEGRGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAMCYARLLGY +PLMM L P LC+EMGSAYPELIQA+LLIEETL+ ED RF K Sbjct: 301 LRRIMRRAMCYARLLGYEDPLMMRLFPVLCSEMGSAYPELIQAQLLIEETLKVEDMRFSK 360 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLD+G+ LLD V S L K+ IL+G VAFKLYDTHGLPLDIMQDIL ARGL G+D+ SF Q Sbjct: 361 TLDKGIYLLDEVSSSLEKNAILDGSVAFKLYDTHGLPLDIMQDILWARGLGGVDVASFKQ 420 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK----VL 476 +LEEQRS+AR+H LGLG TEKIWFSLKEKYG TQF+GY++ GSK + D K L Sbjct: 421 SLEEQRSKARSHCLGLGEKITEKIWFSLKEKYGTTQFVGYNIHHGSKVIAGDEKKGDYSL 480 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 QKP +D T G+ +IVKAIV Q IV+ A +GQKVEV+FDQTPFYAE+GGQ+GDTG A+G Sbjct: 481 SQKPSVDFTQGIPAIVKAIVLQDSIVDVARAGQKVEVLFDQTPFYAESGGQVGDTGIAVG 540 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G+ LQITDVQKK GIFVHHA +E G+LRTEM ++LTI+YQ+RRQLSINHSATHLLH A Sbjct: 541 EGVSLQITDVQKKVGGIFVHHATIEHGVLRTEMPIILTINYQDRRQLSINHSATHLLHAA 600 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L TILG HVSQ GS I P+ LRFD+ HSKPIT E+K I+D++ND+IAQN ++TRIMN Sbjct: 601 LRTILGPHVSQKGSHIIPERLRFDIVHSKPITREEIKLIQDHINDVIAQNYSIITRIMNI 660 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DAIASG++AL G KY+D+VRVVS+E +DG V++S LCGGTHVSSTGEIML++IVSES++ Sbjct: 661 DDAIASGSSALFGKKYSDKVRVVSIESDDGRVYASELCGGTHVSSTGEIMLVHIVSESAV 720 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AGIRRIEA++GQRARS+L+ QDEK++SLASFLKV NVV RVEEIWEE R+L LI+AK Sbjct: 721 SAGIRRIEAVSGQRARSYLVEQDEKVRSLASFLKVQPSNVVKRVEEIWEERRELHLINAK 780 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 KL+LNV+DLSCH IA+VNFMSH+I + D KELK ++D LQKKI+SGIIML+G+SKEKKA Sbjct: 781 HKLKLNVDDLSCHTIANVNFMSHVIPDADFKELKGLIDMLQKKIKSGIIMLIGVSKEKKA 840 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 SV+I VT+DL+DRFNA++L RL+AKVLGG GGGGRP+MAQSGGP+GNK DQ+IA + SFL Sbjct: 841 SVVIAVTQDLIDRFNAINLVRLAAKVLGGSGGGGRPNMAQSGGPDGNKVDQSIANIVSFL 900 Query: 897 K 897 K Sbjct: 901 K 901 >gi|222086162|ref|YP_002544694.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84] gi|221723610|gb|ACM26766.1| alanyl-tRNA synthetase protein [Agrobacterium radiobacter K84] Length = 886 Score = 1032 bits (2669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 513/896 (57%), Positives = 662/896 (73%), Gaps = 36/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E+ Y Sbjct: 1 MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYTT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKEF L Sbjct: 61 ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY D++AF LWKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DAKRLLVTVYHTDDDAFNLWKKIAGLSDDKIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQ KQER LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQITKQERVDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF+ LI+ASE+ TG+K EG + +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFRALIEASEEATGVKAEGEHRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL +MG AYPEL++A+ L ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALVQQMGRAYPELVRAEALTSETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ S L K + L+G+ AFKLYDT+G PLD+ QD L ARG+ G+DI SF Sbjct: 361 KTLERGLSLLNDATSTLHKGDSLDGETAFKLYDTYGFPLDLTQDALRARGI-GVDISSFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ AR+H G G TE IWF LKEK+GAT+F+GYD Sbjct: 420 DAMERQKAEARSHWTGSGDKATETIWFELKEKHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++AIV+ G V+ A +G KV+++ +QTPFY E+GGQ+GDTG D Sbjct: 462 -----TEVAEGVIQAIVKDGVAVDSASAGDKVQIIVNQTPFYGESGGQMGDTGVISSDTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L ++D QKK EG+FVH A V G ++T ++VLT+D+ R +L NHSATHLLH AL Sbjct: 517 KLAVSDTQKKGEGLFVHIATVSDGTIKTGDAVVLTVDHNRRSRLRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED N+I+ QN PV TR+M+ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTH S+TG+I L+ I+ +S Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGVRGAKAGKPYSIELCGGTHASATGQIGLIRILGDS 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RRIEA+TG+ AR +L QD+++K+LA+ LKV +VV RVE + +E RKL +L Sbjct: 697 AVGAGVRRIEAVTGESARDYLAEQDDRVKALATALKVQPTDVVSRVEALMDERRKLEREL 756 Query: 773 IHAKRKLQL-NVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 AKRKL + + S + D+N F+ IS VD K+LK + D + + SG++ L+ Sbjct: 757 ADAKRKLAMGGGQGGSADAVRDINGVKFLGKAISGVDPKDLKGLADEGKTSLGSGVVALI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 G+S++ KAS ++ VT+DL+ RF+AVDL R+++ LGG GGGGRP MAQ+GGP+G K Sbjct: 817 GVSEDGKASAVVAVTDDLIGRFSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGAK 872 >gi|15965551|ref|NP_385904.1| alanyl-tRNA synthetase [Sinorhizobium meliloti 1021] gi|307302671|ref|ZP_07582427.1| alanyl-tRNA synthetase [Sinorhizobium meliloti BL225C] gi|307318519|ref|ZP_07597953.1| alanyl-tRNA synthetase [Sinorhizobium meliloti AK83] gi|7404473|sp|P27866|SYA_RHIME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|15074732|emb|CAC46377.1| Alanyl-tRNA ligase [Sinorhizobium meliloti 1021] gi|306895859|gb|EFN26611.1| alanyl-tRNA synthetase [Sinorhizobium meliloti AK83] gi|306903035|gb|EFN33626.1| alanyl-tRNA synthetase [Sinorhizobium meliloti BL225C] Length = 887 Score = 1023 bits (2645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 506/909 (55%), Positives = 663/909 (72%), Gaps = 37/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+ Y Sbjct: 1 MSGVNEIRSMFLDYFRKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L Sbjct: 61 AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+EE G+R+IEIWNLVFMQ+EQ K+ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSAEEDGDRFIEIWNLVFMQYEQITKEERVDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDLF+ LI ASE+ TG+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +PLM LLPAL +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGARDPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L + + NG+ AFKLYDT+G PLD+ QD L A+G+ G+D +F Sbjct: 361 KTLERGLNLLAEASADLSEGDQFNGETAFKLYDTYGFPLDLTQDALRAKGI-GVDTDAFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ ARA+ G G TE IWF L++K+GAT F+GYD Sbjct: 420 AAMQRQKAEARANWAGSGEAATETIWFELRDKHGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ AIV+ G +VE A G+ V++V +QTPFY E+GGQ+GDTG + Sbjct: 462 -----TESAEGVILAIVKDGAVVESAAKGENVQLVLNQTPFYGESGGQVGDTGVITTETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L +TD QK+ EG+FVH+ VE G ++T + LT+D+ R +L NHSATHLLH AL Sbjct: 517 KLTVTDTQKRGEGLFVHYCTVEEGSVKTGEAAALTVDHARRARLRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+ N+II QN PVVTR+M+ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIIVQNTPVVTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHVS+TG+I L+ +VSES Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGLRGSKAGKPYSVELCGGTHVSATGDIGLVRVVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RR+EA+TG+ AR++L QDE++K+LA+ LKV +V+GRVE + +E RKL +L Sbjct: 697 AVGAGVRRVEALTGEAARAYLGEQDERVKTLAAALKVQPADVLGRVEALLDERRKLEREL 756 Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 AK+KL L N + I V F+ ++S V+ K+LKS+ D +K + SG++ Sbjct: 757 TEAKKKLALAGDGQNGSGDAARDIGGVRFLGRVVSGVEPKDLKSLADDGKKSLGSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 VG+S + KAS ++ VT+DL + +AVDL R+++ LGG GGGGRP MAQ+GGP+G +A + Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGGRAAE 876 Query: 888 AIAGVASFL 896 AI VA L Sbjct: 877 AIEAVAGAL 885 >gi|150396732|ref|YP_001327199.1| alanyl-tRNA synthetase [Sinorhizobium medicae WSM419] gi|205830211|sp|A6U9N4|SYA_SINMW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|150028247|gb|ABR60364.1| alanyl-tRNA synthetase [Sinorhizobium medicae WSM419] Length = 887 Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/897 (55%), Positives = 660/897 (73%), Gaps = 37/897 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E+ Y Sbjct: 1 MSGVNEIRSMFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L Sbjct: 61 AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ K+ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQYEQITKEERVDLPRPSIDTGMGLERLAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDLF+ LI ASE+ TG+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +PLM LLPAL +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAQDPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ + L + + NG+ AFKLYDT+G PLD+ QD L A+G+ G+D +F Sbjct: 361 KTLERGLNLLEEASADLSEGDQFNGETAFKLYDTYGFPLDLTQDALRAKGI-GVDTDAFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ ARA+ G G TE IWF L++K+GAT F+GYD Sbjct: 420 AAMQRQKAEARANWTGSGDAATETIWFELRDKHGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++AIV+ G +VE A G+ V++V +QTPFY E+GGQ+GDTG + Sbjct: 462 -----TESAEGVIQAIVRDGTVVESASKGETVQLVLNQTPFYGESGGQVGDTGVVTTESG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L +TD QK+ EG+FVH+ +VE G ++T + L +D+ R +L NHSATHLLH AL Sbjct: 517 KLTVTDTQKRGEGLFVHYCVVEEGSVKTGEAAALAVDHARRTRLRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HVSQ GS + P+ LRFDV+H KP+TS ELK +E+ N+II QN PVVTR+M+ +DA Sbjct: 577 VLGTHVSQKGSLVAPERLRFDVSHPKPMTSEELKVVEEMANEIIVQNTPVVTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHVS+TG+I L+ IVSES Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGLHGSKAGKAYSVELCGGTHVSATGDIGLVRIVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ +G+RR+EA+TG+ AR++L QDE++K+LA+ LKV +V+GRVE + +E RKL +L Sbjct: 697 AVGSGVRRVEALTGEAARAYLGEQDERVKALAAALKVQPSDVLGRVESLLDERRKLEREL 756 Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 AK+KL L N + +I V F+ ++S V+ K+LKS+ D +K + SG++ Sbjct: 757 TEAKKKLALAGDGQNGSGEAAREIGGVRFLGRVVSGVEPKDLKSLADDGKKTLGSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 VG+S + KAS ++ VT+DL + +AVDL R+++ LGG GGGGRP MAQ+GGP+G + Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGGR 873 >gi|227822193|ref|YP_002826164.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234] gi|227341193|gb|ACP25411.1| alanyl-tRNA synthetase [Sinorhizobium fredii NGR234] Length = 887 Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/897 (55%), Positives = 656/897 (73%), Gaps = 37/897 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F+KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG E+ Y Sbjct: 1 MSGVNEIRSMFLDYFRKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L Sbjct: 61 AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DAKRLLVTVYHTDDEAFGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS+ E+G+R+IEIWNLVFMQ+EQ K+ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 EQIWGGPPGSADEDGDRFIEIWNLVFMQYEQITKEERVNLPRPSIDTGMGLERLAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDLF+ LI ASE+ TG+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 QHDNYDIDLFRALIAASEEATGVKAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLMWKLLPALVGQMGRAYPELVRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L + + +G+ AFKLYDT+G PLD+ QD L +G+ +D +F+ Sbjct: 361 KTLERGLSLLADASAGLSEGDQFDGETAFKLYDTYGFPLDLTQDALRTKGIT-VDTDAFS 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ ARA+ G G TE IWF LKEK+GAT F+GYD Sbjct: 420 TAMQRQKAEARANWAGSGEAATETIWFELKEKHGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++AIV+ G +VE A G+ V+++ +QTPFY E+GGQ+GDTG + Sbjct: 462 -----TESAEGVIQAIVRDGAVVESASKGESVQLILNQTPFYGESGGQMGDTGVIATETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ +TD QK+ EG+FVH+ V GI++T + LT+D+ R +L NHSATHLLH AL Sbjct: 517 KVAVTDTQKRGEGLFVHYGTVTEGIVKTGEAAALTVDHARRLRLRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ EL+ +E+ N++I QN PV TR+M+ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELRIVEEMANEVIVQNTPVTTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHVS+TG+I L+ +VSES Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGQGIRGSKAGRPYSVELCGGTHVSATGDIGLVRVVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RR+EA+TG+ AR++L QDE++KSLAS LKV +V+GRVE + +E RKL +L Sbjct: 697 AVGAGVRRLEALTGEAARAYLNEQDERVKSLASALKVQPADVLGRVEALLDERRKLEREL 756 Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 AK+KL L N + +I V F+ ++S V+ K+LKS+ D +K + SG++ Sbjct: 757 TEAKKKLALVGDGENGSGDAAREIGGVRFLGKVVSGVEPKDLKSLADDGKKTLGSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 VG+S + KAS ++ VT+DL + +AVDL R+++ LGG GGGGRP MAQ+GGP+G + Sbjct: 817 VGVSGDGKASAVVAVTDDLTSKVSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGGR 873 >gi|241204888|ref|YP_002975984.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858778|gb|ACS56445.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 884 Score = 999 bits (2584), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/910 (55%), Positives = 651/910 (71%), Gaps = 42/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKNRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS EE G+R++E WNLVFMQFEQ ER LP+ SIDTGMGLERMA VLQ Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTAPGERSPLPRPSIDTGMGLERMAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI E G+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLIGTIEDTMGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ LLP L +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLVYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL ++L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F Sbjct: 359 KTLERGLSLLSDATTNLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE IWF LKEK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELKEKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV++G + A +G KV++V QTPFY E+GGQ+GDTG D Sbjct: 460 -----TETAEGVVQAIVKEGAVSTAAKAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QK+ EG+FVH V G+ + ++VLT+D+ R +L NHSATHLLH AL Sbjct: 515 KIEISDTQKRGEGLFVHQGTVIDGVFKDGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED N+I+ QN PV TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVV++ + G +S LCGGTHV +TG+I L+ ++ ES Sbjct: 635 IAEGAMALFGEKYGDEVRVVAMGEGVRGAKAGKAYSIELCGGTHVGATGQIGLIRVLGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RRIEA+TG+ AR +L QDE++K+LA+ LKV G V+ RVE + +E RKL +L Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDERVKTLAASLKVQPGEVLSRVEALMDERRKLEKEL 754 Query: 773 IHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 AKRKL + +V+ + ++A V F+ IS VD K+LK + D + I SG++ Sbjct: 755 GDAKRKLAMGGGQGGSVD--AVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVA 812 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 LVG+S + KAS ++ VT DL+ R++AVDL R+++ LGG GGGGRP MAQ+GGP+G+KAD Sbjct: 813 LVGVSDDGKASAVVAVTPDLVQRYSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGSKAD 872 Query: 887 QAIAGVASFL 896 +AI VA L Sbjct: 873 EAIEAVAVAL 882 >gi|116252382|ref|YP_768220.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841] gi|205830192|sp|Q1MFZ9|SYA_RHIL3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|115257030|emb|CAK08124.1| putative alanyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841] Length = 884 Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/910 (55%), Positives = 650/910 (71%), Gaps = 42/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI+T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKNRLLVTVYSEDEEAATLWKKIAGFSDDKIIRISTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS EE G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI E G+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLIGTIEDTMGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ LLP L +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLVYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F Sbjct: 359 KTLERGLSLLSDATTDLAKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE +WF LKEK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELKEKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV+ G + EA +G KV++V QTPFY E+GGQ+GDTG D Sbjct: 460 -----TETAEGVVQAIVKDGAVAAEASAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QK+ EG+FVH V G+ + ++VLT+D+ R +L NHSATHLLH AL Sbjct: 515 KIEISDTQKRGEGLFVHQGTVVDGVFKDGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED N+I+ QN PV TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVV++ + G +S LCGGTHV +TG+I L+ ++ ES Sbjct: 635 IAEGAMALFGEKYGDEVRVVAMGEGVRGAKAGKPYSIELCGGTHVGATGQIGLIRVLGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RRIEA+TG+ AR +L QDE++K+LA+ LKV G V+ RVE + +E RKL +L Sbjct: 695 AVGAGVRRIEAVTGESAREYLAEQDERVKTLAASLKVQPGEVLSRVEALMDERRKLEKEL 754 Query: 773 IHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 AKRKL + +V+ + ++A V F+ IS VD K+LK + D + I SG++ Sbjct: 755 ADAKRKLAMGGGQGGSVD--AVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVA 812 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 LVG+S + KAS ++ VT DL+ R++AVDL R+++ LGG GGGGRP MAQ+GGP+G+KAD Sbjct: 813 LVGVSDDGKASAVVAVTPDLVQRYSAVDLVRIASAALGGKGGGGRPDMAQAGGPDGSKAD 872 Query: 887 QAIAGVASFL 896 +AI VA L Sbjct: 873 EAIEAVAVAL 882 >gi|325293275|ref|YP_004279139.1| Alanyl-tRNA synthetase [Agrobacterium sp. H13-3] gi|325061128|gb|ADY64819.1| Alanyl-tRNA synthetase [Agrobacterium sp. H13-3] Length = 897 Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/900 (54%), Positives = 648/900 (72%), Gaps = 43/900 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 11 MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLESRPYST 70 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 71 AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAITHAWNLITKEFGI 130 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 131 DRNRLLVTVYHTDDEAFNLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 190 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQ+EQ K+ER LP+ SIDTGMGLER++ +LQ Sbjct: 191 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLTKEERIDLPRPSIDTGMGLERISALLQG 250 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DLF+ LI AS + TG+ EG +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 251 KHDNYDTDLFRALISASVEATGVPAEGEKRASHRVIADHLRSSAFLIADGVLPSNEGRGY 310 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPL+ LLPAL +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 311 VLRRIMRRAMRHAELLGSREPLIYKLLPALIQQMGRAYPELVRAEALISETLKLEETRFR 370 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL S L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F Sbjct: 371 KTLERGLSLLSDATSTLHKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 429 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE +WF LKEK GAT+F+GYD Sbjct: 430 DAMQRQKAEARSHWAGSGDKATETVWFELKEKLGATEFLGYD------------------ 471 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++AIV+ G+ V+ A G+ V++V +QTPFY E+GGQ+GDTG GD Sbjct: 472 -----TETAEGVIQAIVKDGKSVDSAAEGETVQIVVNQTPFYGESGGQMGDTGVISGDNG 526 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++ QKK EG+FVH V +G L+ + ++ LT+D+ R +L NHSATHLLH AL Sbjct: 527 TFTVSETQKKGEGLFVHSGTVSKGGLKLDDAVQLTVDHDRRSRLRANHSATHLLHEALRE 586 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +E+ N+I+ QN PVVTR+M+ +DA Sbjct: 587 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEEMANEIVLQNSPVVTRLMSVDDA 646 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVH--------SSALCGGTHVSSTGEIMLLYIV 711 IA GA AL G KY D VRVVS+ GVH S LCGGTHV++TG+I L+ I+ Sbjct: 647 IAEGAMALFGEKYGDEVRVVSMGT---GVHGAKANRPYSVELCGGTHVAATGQIGLIRIL 703 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 ES++ AG+RR+EA+TGQ A ++L QDE++K+LAS LKV G+V+ RVE + +E +KL Sbjct: 704 GESAVGAGVRRLEAVTGQGALAYLSEQDERVKALASSLKVQPGDVLSRVEGLLDERKKLE 763 Query: 771 -QLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 +L A++KL + + ++A VNF++ +S +D+K+LK + D + I SG+ Sbjct: 764 RELADARKKLAMGGGSSDAGANDVQQVAGVNFLAKSLSGIDAKDLKGLADEAKANIGSGV 823 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++L+ +S++ KAS + VTEDL RF+AVD+ R ++ LGG GGGGRP MAQ+GGP+G K Sbjct: 824 VLLIAVSEDGKASAVAAVTEDLTGRFSAVDIVRTASAALGGKGGGGRPDMAQAGGPDGAK 883 >gi|159184958|ref|NP_354854.2| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58] gi|22096194|sp|Q8UE87|SYA_AGRT5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|159140236|gb|AAK87639.2| alanyl-tRNA synthetase [Agrobacterium tumefaciens str. C58] Length = 887 Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/897 (54%), Positives = 646/897 (72%), Gaps = 37/897 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MSGVNEIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLESRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 61 AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAITHAWNLITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY D+EAF LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DRNRLLVTVYHTDDEAFNLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQ+EQ K+ER LP+ SIDTGMGLER++ +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYEQLTKEERIDLPRPSIDTGMGLERISALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DLF+ LI AS + TG+ EG + +HRVI DHLRSS+FLIADG+LP++EGRGY Sbjct: 241 KHDNYDTDLFRALIAASVEATGVPAEGEHRASHRVIADHLRSSAFLIADGVLPSSEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PL+ LLPAL +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAELLGSRDPLIYRLLPALIQQMGRAYPELVRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL S L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F Sbjct: 361 KTLERGLSLLSDATSTLHKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE +WF LKEK+GAT+F+GYD Sbjct: 420 DAMQRQKAEARSHWAGSGDKATETVWFELKEKFGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++AIV+ G+ V+ A G+ V +V +QTPFY E+GGQ+GDTG +GD Sbjct: 462 -----TESAEGVIQAIVRDGKEVDSAAEGETVHIVVNQTPFYGESGGQMGDTGVIVGDAG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ QKK EG+FVH V +G L+ ++ LT+D+ R +L NHSATHLLH AL Sbjct: 517 TFDVSGTQKKGEGLFVHSGTVSKGGLKVNEAVQLTVDHDRRSRLRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED N+I+ QN PVVTR+M+ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKVVEDMANEIVLQNSPVVTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHV++TG+I L+ I+ ES Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVAATGQIGLIRILGES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ +G+RR+EA+TGQ A ++L QDE++K+LAS LKV G+V+ RVE + +E +KL +L Sbjct: 697 AVGSGVRRLEAVTGQGALAYLAEQDERVKALASSLKVQPGDVLSRVEGLLDERKKLEREL 756 Query: 773 IHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A++KL + + ++A VNF++ +S +D+K+LK + D + + SG+++L Sbjct: 757 ADARKKLAMGGGSSDAGANDVQQVAGVNFLAKSLSGIDAKDLKGLADEAKANLGSGVVLL 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + +S + KAS + VTEDL RF+AVD+ R ++ LGG GGGGRP MAQ+GGP+G K Sbjct: 817 IAVSDDGKASAVAAVTEDLTGRFSAVDIVRTASAALGGKGGGGRPDMAQAGGPDGTK 873 >gi|86357937|ref|YP_469829.1| alanyl-tRNA synthetase [Rhizobium etli CFN 42] gi|86282039|gb|ABC91102.1| alanyl-tRNA synthetase protein [Rhizobium etli CFN 42] Length = 899 Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/905 (55%), Positives = 642/905 (70%), Gaps = 38/905 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 16 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYAT 75 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L Sbjct: 76 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 135 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 136 PKHRLLVTVYSEDEEAAALWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 195 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS EE G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 196 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 255 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ L E G+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 256 VQSVFDTDLFRTLTGTIEDTIGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 313 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLP L EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 314 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELARAEALISETLKLEEGRFR 373 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F Sbjct: 374 KTLERGLSLLSDATADLDKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDIAGFT 432 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE IWF L+EK+GAT+F+GYD Sbjct: 433 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 474 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV+ G + EA +G KV++V +QTPFY E+GGQ+GD G D Sbjct: 475 -----TEAAEGVVQAIVRDGAVAAEAKAGDKVQIVVNQTPFYGESGGQMGDAGVISSDHG 529 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QK+ EG+FVH V G++R ++ +T+D+ R +L NHSATHLLH AL Sbjct: 530 KIEISDTQKRGEGLFVHLGTVIEGVVRDGDAVAMTVDHARRSRLRANHSATHLLHEALRE 589 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T ELK +ED N+I+ QN PV TR+M+ +DA Sbjct: 590 VLGTHVAQKGSLVAPERLRFDVSHPKPMTPEELKIVEDMANEIVLQNSPVTTRLMSVDDA 649 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHVS+TG+I L+ I+ ES Sbjct: 650 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 709 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RR+EA+TG+ AR +L QD+++K+LA+ LKV V+ RVE + +E RKL +L Sbjct: 710 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALIDERRKLEKEL 769 Query: 773 IHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 AKRKL + + ++A V F+ IS VD K+LK + D + I SG++ L+ Sbjct: 770 ADAKRKLAMGGGQGGSGDAVREVAGVKFLGKSISGVDPKDLKGLADEGKTSIGSGVVALI 829 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G+S++ KAS ++ VT DL++R++AVDL R+++ LGG GGGGRP MAQ+GGP+G+KAD+A Sbjct: 830 GVSEDGKASAVVAVTPDLVERYSAVDLVRIASVALGGKGGGGRPDMAQAGGPDGSKADEA 889 Query: 889 IAGVA 893 I VA Sbjct: 890 IEAVA 894 >gi|205830239|sp|Q2K7T4|SYA_RHIEC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 884 Score = 986 bits (2550), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/905 (55%), Positives = 642/905 (70%), Gaps = 38/905 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYAT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKHRLLVTVYSEDEEAAALWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS EE G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ L E G+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLTGTIEDTIGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLP L EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELARAEALISETLKLEEGRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F Sbjct: 359 KTLERGLSLLSDATADLDKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDIAGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE IWF L+EK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV+ G + EA +G KV++V +QTPFY E+GGQ+GD G D Sbjct: 460 -----TEAAEGVVQAIVRDGAVAAEAKAGDKVQIVVNQTPFYGESGGQMGDAGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QK+ EG+FVH V G++R ++ +T+D+ R +L NHSATHLLH AL Sbjct: 515 KIEISDTQKRGEGLFVHLGTVIEGVVRDGDAVAMTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T ELK +ED N+I+ QN PV TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTPEELKIVEDMANEIVLQNSPVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHVS+TG+I L+ I+ ES Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RR+EA+TG+ AR +L QD+++K+LA+ LKV V+ RVE + +E RKL +L Sbjct: 695 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALIDERRKLEKEL 754 Query: 773 IHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 AKRKL + + ++A V F+ IS VD K+LK + D + I SG++ L+ Sbjct: 755 ADAKRKLAMGGGQGGSGDAVREVAGVKFLGKSISGVDPKDLKGLADEGKTSIGSGVVALI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G+S++ KAS ++ VT DL++R++AVDL R+++ LGG GGGGRP MAQ+GGP+G+KAD+A Sbjct: 815 GVSEDGKASAVVAVTPDLVERYSAVDLVRIASVALGGKGGGGRPDMAQAGGPDGSKADEA 874 Query: 889 IAGVA 893 I VA Sbjct: 875 IEAVA 879 >gi|222148884|ref|YP_002549841.1| alanyl-tRNA synthetase [Agrobacterium vitis S4] gi|221735870|gb|ACM36833.1| alanyl-tRNA synthetase [Agrobacterium vitis S4] Length = 887 Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/909 (53%), Positives = 648/909 (71%), Gaps = 36/909 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ NGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MSGVNDIRSTFLDYFKTNGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW+L+T+EF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWNLITREFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EAF LWKKI+GL +KIIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DRDKLCVTVYHTDDEAFGLWKKIAGLPEEKIIRIGTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ K++R LP+ SIDTGMGLER+A +LQ Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQYEQVTKEQRVDLPRPSIDTGMGLERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF+ LI AS +TG+ EG +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFRALIDASVDLTGVPAEGERRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P++ LLP L +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAELLGSRDPMIYKLLPVLVQQMGRAYPELVRAEALISETLKLEENRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K + ++G+ AFKLYDT+G PLD+ QD L ARG+ G+DI FN Sbjct: 361 KTLERGLSLLSDATATLNKGDSIDGETAFKLYDTYGFPLDLTQDALRARGI-GVDITGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ ARA G G E +WF LK+K+GAT+F+GY Sbjct: 420 DAMQRQKAEARASWSGSGDKAMETVWFELKDKHGATEFLGYS------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++A+V+ G ++E+A +G+ V+VV +QTPFY E+GGQ+GDTG +GDG Sbjct: 462 -----AESAEGEIQALVRDGAVIEQATAGENVQVVVNQTPFYGESGGQVGDTGEIVGDGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 L++ D KK EG+FVH A V G +R + L +D+ R +L NHSATHLLH AL Sbjct: 517 VLEVRDTLKKGEGLFVHVATVREGTVRAGTVVALNVDHARRSRLRANHSATHLLHEALRD 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHV+Q GS + P+ LRFD++H KP+T+ ELK +ED N+II QN V TR+M +DA Sbjct: 577 VLGSHVAQKGSLVAPERLRFDISHPKPVTAEELKIVEDMANEIIVQNAAVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHVS+TG+I L+ +V+ES Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTVVRGPKAGRPYSIELCGGTHVSATGDIGLVRLVAES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RRIEA+TG+ AR++L QDE++K+LAS LKV +VV RVE + +E RKL +L Sbjct: 697 AVGAGVRRIEALTGESARAYLAEQDERVKALASALKVQPVDVVSRVEALVDERRKLEREL 756 Query: 773 IHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 AKRKL + ++ + F+ ++ +D K+LK + D + + SG+++L+ Sbjct: 757 ADAKRKLAMGGGSTGAADVPRELGGIKFIGKQLAGIDPKDLKGMADEAKSVLGSGVVLLI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++++ KAS + VT DL + +AVDL R+++ LGG GGGGRP MAQ+GGP+G KAD A Sbjct: 817 AVAEDGKASAVASVTGDLTSKVSAVDLVRIASSALGGKGGGGRPDMAQAGGPDGAKADDA 876 Query: 889 IAGVASFLK 897 I VA ++ Sbjct: 877 IEAVAKAIE 885 >gi|209549551|ref|YP_002281468.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535307|gb|ACI55242.1| alanyl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 884 Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/899 (55%), Positives = 638/899 (70%), Gaps = 44/899 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ FDL Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS EE G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 ENVWGGPPGSPEEDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI A E+ G K +G+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLIGAIEETMGAKAKGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLP L EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLMYKLLPTLVQEMGRAYPELVRAEALISETLKLEEGRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + LGK ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F Sbjct: 359 KTLERGLSLLSDATTDLGKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE IWF L+EK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETIWFELREKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV++G EE +G KV++V +QTPFY E+GGQ+GDTG D Sbjct: 460 -----TETAEGVVQAIVREGAAAEEVKAGDKVQIVVNQTPFYGESGGQMGDTGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R++I+D QKK EG+FVH +V G + ++VLT+D+ R +L NHSATHLLH AL Sbjct: 515 RIEISDTQKKGEGLFVHSGVVVEGAFKAGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+++ ELK +ED N+I+ QN V TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMSAEELKIVEDMANEIVLQNSAVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVH--------SSALCGGTHVSSTGEIMLLYIV 711 I GA AL G KY D VRVVS+ GVH S LCGGTHVS+TG+I L+ ++ Sbjct: 635 IEEGAMALFGEKYGDEVRVVSMGT---GVHGAKSNKPYSVELCGGTHVSATGQIGLIRVL 691 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 ES++ AG+RRIEA+TG+ AR +L QD+++K+LA+ LKV V+ RVE + +E RKL Sbjct: 692 GESAVGAGVRRIEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALMDERRKLE 751 Query: 771 -QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 +L AKRKL + + ++A V F+ IS VD K+LK + D + I SG++ Sbjct: 752 KELADAKRKLAMGGGQGGSADAVREVAGVKFLGKSISGVDPKDLKGLADDGKTSIGSGVV 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 L+G+S + KAS ++ VT DL+DRF+AVDL R+++ LGG GGGGRP MAQ+GGP+G K Sbjct: 812 TLIGVSDDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870 >gi|190892008|ref|YP_001978550.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652] gi|190697287|gb|ACE91372.1| alanyl-tRNA synthetase protein [Rhizobium etli CIAT 652] Length = 884 Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/896 (55%), Positives = 640/896 (71%), Gaps = 38/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS+EE G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 ENVWGGPPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ L A E G+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLTGAIEDAAGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ LLP L +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F Sbjct: 359 KTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE +WF L+EK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG D Sbjct: 460 -----TEAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QKK EG+FVH V G +T ++VLT+D+ R +L NHSATHLLH AL Sbjct: 515 KIEISDTQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+ N+I+ QN PV TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHVS+TG+I L+ I+ ES Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RR+EA+TG+ AR++L QD+++K+LA+ LKV V+ RVE + +E RKL +L Sbjct: 695 AVGAGVRRLEAVTGESARAYLAEQDDRVKTLAASLKVQPSEVLSRVETLIDERRKLEREL 754 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 AKRKL + + ++A V ++ ++ VD K+LK + D + I SGI+ L+ Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 G+S++ KAS ++ VT DL+DRF+AVDL R+++ LGG GGGGRP MAQ+GGP+G K Sbjct: 815 GVSEDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870 >gi|327190521|gb|EGE57615.1| alanyl-tRNA synthetase protein [Rhizobium etli CNPAF512] Length = 884 Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/896 (55%), Positives = 639/896 (71%), Gaps = 38/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNDIRSTFLDYFKKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+T+ F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 PKHRLLVTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS+EE G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 ENVWGGPPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ L A E G+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VQSVFDTDLFRTLTGAIEDAVGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ LLP L +MG AYPEL++A+ LI ETL+ E+ RF Sbjct: 299 VLRRIMRRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFR 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F Sbjct: 359 KTLERGLSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFT 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ AR+H G G TE +WF L+EK+GAT+F+GYD Sbjct: 418 DAMQRQKAEARSHWAGSGEKATETVWFELREKHGATEFLGYD------------------ 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG D Sbjct: 460 -----TEAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++I+D QKK EG+FVH V G +T ++VLT+D+ R +L NHSATHLLH AL Sbjct: 515 KIEISDTQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T+ ELK +E+ N+I+ QN PV TR+M+ +DA Sbjct: 575 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHVS+TG+I L+ I+ ES Sbjct: 635 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RR+EA+TG+ AR +L QD+++K+LA+ LKV V+ RVE + +E RKL +L Sbjct: 695 AVGAGVRRLEAVTGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVETLIDERRKLEREL 754 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 AKRKL + + ++A V ++ ++ VD K+LK + D + I SGI+ L+ Sbjct: 755 ADAKRKLAMGGGQGGSADAVREVAGVKYLGKAVAGVDPKDLKGLADDGKASIGSGIVTLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 G+S++ KAS ++ VT DL+DRF+AVDL R+++ LGG GGGGRP MAQ+GGP+G K Sbjct: 815 GVSEDGKASAVVAVTPDLVDRFSAVDLVRVASAALGGKGGGGRPDMAQAGGPDGAK 870 >gi|163759600|ref|ZP_02166685.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43] gi|162283197|gb|EDQ33483.1| alanyl-tRNA synthetase [Hoeflea phototrophica DFL-43] Length = 884 Score = 965 bits (2494), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/895 (53%), Positives = 635/895 (70%), Gaps = 35/895 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F+KN HE++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MSGVNEIRSAFLDYFKKNEHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRPYTT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI+LAW+LLT+EF + Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIELAWNLLTREFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ RL +TVY D++AF LW+KI+G+ +IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 NKERLLVTVYHTDDDAFDLWRKIAGVPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS++E G+R+IEIWNLVFMQFEQ ER LP+ SIDTGMGLER+A +LQ Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQLTVDERVDLPRPSIDTGMGLERIAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDLF+ LI ASE++TG+ EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 QHDNYDIDLFRRLIMASEELTGVSAEGDRRASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLP L EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLMYKLLPTLVAEMGRAYPELTRAEALISETLKLEETRFS 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD + LG+ + L G+ AFKLYDT+G PLD+ QD L RG+ +D F Sbjct: 361 KTLERGLSLLDEASADLGEGDRLGGETAFKLYDTYGFPLDLTQDALRQRGIE-VDTDGFK 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARAH G G TE +W+ +K++ GAT F+GYD Sbjct: 420 AAMERQKAEARAHWSGSGDKATETVWYEIKDRVGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++A+V+ G V A +G+ V+VV +QTPFY E+GGQ+GD G G+G Sbjct: 462 -----TEIAEGVIQAMVRDGAEVAAAKAGESVDVVVNQTPFYGESGGQMGDQGIISGEGY 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 RL+++D QK+ EG+FVH A+V G ++ L + + R ++ NHSATHLLH AL Sbjct: 517 RLEVSDTQKRGEGLFVHRAVVAEGEVKAGAVAQLDVAHSRRAKIRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFDV+H KP+T+ EL +E N+II QN PV TR+M +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDVSHPKPMTAEELSEVETMANEIILQNSPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ GV +S LCGGTHV++TGEI L+ ++S+S Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGVRGVKANRPYSVELCGGTHVAATGEIGLVRVLSDS 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RRIEA+TG+ AR HL QDEKL+ AS LKV G+VV R+E + +E +K+ +L Sbjct: 697 AVSAGVRRIEAVTGEAARQHLSEQDEKLRQAASLLKVQPGDVVSRIEALMDERKKMEREL 756 Query: 773 IHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A++KL L I V F+ +++ V K+LK ++DA + + SG+ V Sbjct: 757 TEARKKLALGGGGAGGDESRDIGGVKFLGKVVNGVQPKDLKGLVDAAKTSLGSGVAAFVA 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 IS++ KASV++ VTEDL + +AVDL R++++ +GG GGGGRP MAQ+GGP+G K Sbjct: 817 ISEDGKASVVVGVTEDLTSKLSAVDLVRVASQAIGGKGGGGRPDMAQAGGPDGAK 871 >gi|163868621|ref|YP_001609830.1| alanyl-tRNA synthetase [Bartonella tribocorum CIP 105476] gi|205829989|sp|A9IVY8|SYA_BART1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|161018277|emb|CAK01835.1| Alanyl-tRNA synthetase [Bartonella tribocorum CIP 105476] Length = 888 Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/913 (53%), Positives = 656/913 (71%), Gaps = 41/913 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V++IR+TFL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+ +Y+ Sbjct: 1 MNSVNNIRSTFLDYFHRNGHQVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQHLYKK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+WDLLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFLSWDLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+ A +LW+KISGL +KI+RI T DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYQSDDVAAELWRKISGLPDEKIVRIATADNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQ+EQ +K+ER LP SIDTGMGLER+A VLQ Sbjct: 181 DEIWGGPPGSMEEDGDRFIEIWNLVFMQYEQLSKEERVDLPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI ASE++TG+K G+ + +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFRVLIGASEKITGIKATGDFVASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM LLPAL EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMWQLLPALICEMGQAYPELVRAESLISETLKLEEIRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ + L + + LNG+VAFKLYDT+G PLD+ QD+L RG++ +D+ +F+ Sbjct: 361 KTLERGLGLLNEESAKLKEGDHLNGEVAFKLYDTYGFPLDLTQDVLRRRGIS-VDVDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q+ ARAH G G TE IWFS++++ G T+F+GY+ Sbjct: 420 KAMERQKEEARAHWSGSGEAVTETIWFSVRDQVGVTEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+V G+IV+E SGQK +V +QTPFY E+GGQ+GD+G G+ Sbjct: 462 -----TEKAEGIITALVCDGKIVDEVSSGQKAILVLNQTPFYGESGGQIGDSGIISGEDF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKKA+G+F+H V+ G + + LT+D R+++ NHSATHLLH AL Sbjct: 517 IFEVHDTQKKADGVFIHLGKVKSGHAKISDCVQLTVDVVRRKKIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHV+Q GS ++P+ LRFD +H K ++ ELK IED N+I+ QN V TR+M ++A Sbjct: 577 VLGSHVTQKGSLVSPERLRFDFSHPKSVSLEELKKIEDLANEIVLQNNKVTTRLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSES 714 I+ GA AL G KY D VRVVS+ E GG+ S LCGGTHV TG+I L++IVSES Sbjct: 637 ISEGAMALFGEKYEDEVRVVSMGAPLEQGGLKKHWSIELCGGTHVERTGDIGLIHIVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 S+ AG+RRIEA+TG AR +L QD +++ ++ LK S ++ RV + +E RK +L Sbjct: 697 SVSAGVRRIEALTGAAARLYLCRQDVRIREISDLLKTSSSDLEERVRSLLDERRKFEKEL 756 Query: 773 IHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 ++K+ LN + D++ I ++FM HI+ + ++LK+++DA +K+I SG++ Sbjct: 757 NDVRKKMVLNGKITESGQGDITI--INGLSFMRHIVKNILPRDLKALVDAGKKQIGSGVV 814 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + IS++ K S ++ VT+DL D+ NAVDL R+ + VLGG GGGGR MAQ+GGP+GNKA Sbjct: 815 AFITISEDGKGSAVVGVTDDLTDKLNAVDLVRILSNVLGGQGGGGRSDMAQAGGPDGNKA 874 Query: 886 DQAIAGVASFLKK 898 ++A A + FL+K Sbjct: 875 NEAFAALKDFLEK 887 >gi|319784062|ref|YP_004143538.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169950|gb|ADV13488.1| alanyl-tRNA synthetase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 888 Score = 957 bits (2475), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/902 (52%), Positives = 636/902 (70%), Gaps = 37/902 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+K GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRKEGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T+EF L Sbjct: 61 ASTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 SKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIATSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS EE G+R++E WNLVFMQ+EQ K+ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+HLI A+ G + + ++RVI DHLRSSSFL+ADG+LP+NEGRGY Sbjct: 241 VESVFETDLFRHLIDAASSAIGHGPDKETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+PAL EMG AYPEL++ + LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLITETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LL L ++L+G+ AFKLYDT+G PLD+ QD L R ++ +D F Sbjct: 361 KTLVRGLGLLSEATETLHAGDMLDGETAFKLYDTYGFPLDLTQDALRQRSIS-VDTAGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q++ AR H G G TE IWFS++EK GAT+F+GY+ Sbjct: 420 NAMEQQKAEARKHWAGSGDAATETIWFSVREKAGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I++A+V+ G+ V+ A G V +V +QTPFYAE+GGQ+GDTG G+G Sbjct: 462 -----TEAAEGIIQALVRDGKAVDGAGKGDAVAIVVNQTPFYAESGGQMGDTGVISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++++D QKKA+G+FVH V G ++T ++ L +D+ R +L NHSATHL+H AL Sbjct: 517 SIEVSDTQKKADGLFVHIGKVASGTVKTGAAVELKVDHARRSRLRANHSATHLIHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHV+Q GS + P+ LRFD++H+KPI++ +L+ +E N+I+ QN PV TR+M+ +DA Sbjct: 577 VLGSHVAQKGSLVAPERLRFDISHNKPISAEDLEEVERMANEIVVQNGPVTTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHV +TG+I L+ +VS+S Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RRIEA+TG+ AR HL QD +LK+ A+ LK+S +V RVE + EE +KL +L Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKATAAVLKISPADVPARVETLLEERKKLEKEL 756 Query: 773 IHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A++KL L + +A V F+ +S V K+LK + DA + + SG+++ Sbjct: 757 TEARKKLALGGGSSADAPAANETVAGVGFLGKTVSGVSPKDLKPLADAGKTSLGSGVVVF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 VG ++ KASV++ VT+DL+ RF+AVDL R+++ LGG GGGGRP MAQ+GGP+ +KAD Sbjct: 817 VGSGEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKADD 876 Query: 888 AI 889 AI Sbjct: 877 AI 878 >gi|153009317|ref|YP_001370532.1| alanyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188] gi|205830165|sp|A6X0E9|SYA_OCHA4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151561205|gb|ABS14703.1| alanyl-tRNA synthetase [Ochrobactrum anthropi ATCC 49188] Length = 885 Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/894 (54%), Positives = 627/894 (70%), Gaps = 36/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++++KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYYRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIFFD G Sbjct: 121 PKDKLLVTVYHTDDDAANYWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQFEQ ++R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQITPEQRIDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGEFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRADALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LL L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D F+ Sbjct: 361 KTLDRGLGLLSDATESLVEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTDGFS 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 AAMQRQKAEARANWAGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ A+V+ G V+ A G V VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TEVAEGVITALVRDGAEVQSAAEGDVVSVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + I D QKK EG+FVH V +G +T ++ L +D R ++ NHSATHLLH AL Sbjct: 517 AIAIKDTQKKGEGVFVHIGEVTKGTAKTGDAVELKVDSVRRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LGSHV+Q GS + PD LRFD +H KPI++ EL +E+ N+II QN PV TR+M +DA Sbjct: 577 TLGSHVAQKGSLVAPDRLRFDFSHPKPISAEELTQVENLANEIILQNAPVSTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ ++G +S LCGGTHV TG+I L+ IVSE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKEGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RR+EA+TG+ AR +L QDE++K++A LK + + RV + +E +KL +L Sbjct: 697 AVAAGVRRMEALTGEAARLYLEEQDERVKAIAGALKTTPSEALERVNALLDERKKLEREL 756 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A++KL L + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSADGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 GI ++ KAS + VTEDL+ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 GIGEDSKASAVAAVTEDLVGRFSAVDLVRAASVALGGAGGGGRPDMAQAGGPDG 870 >gi|306844100|ref|ZP_07476694.1| alanyl-tRNA synthetase [Brucella sp. BO1] gi|306275543|gb|EFM57275.1| alanyl-tRNA synthetase [Brucella sp. BO1] Length = 885 Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/894 (53%), Positives = 630/894 (70%), Gaps = 36/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSEDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRNGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V +G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ IVSE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL +L Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A++KL L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870 >gi|239832092|ref|ZP_04680421.1| alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301] gi|239824359|gb|EEQ95927.1| alanyl-tRNA synthetase [Ochrobactrum intermedium LMG 3301] Length = 885 Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/894 (54%), Positives = 630/894 (70%), Gaps = 36/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+L+TKEF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDEAISFAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIFFD G Sbjct: 121 PKDKLLVTVYHTDDDAANYWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQFEQ ++R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSADEDGDRFIEIWNLVFMQFEQITPEQRIDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K +G +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKADGELRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLP L EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPTLIREMGQAYPELIRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D F+ Sbjct: 361 KTLDRGLGLLSDATENLVEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTDGFS 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 AAMERQKAEARANWAGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G V+ A G+ V VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVVAALVRDGAEVQSASEGEVVSVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + I D QKK EG+FVH V +G ++T ++ L +D R ++ NHSATHLLH AL Sbjct: 517 VIAIKDTQKKGEGVFVHIGEVAKGTVKTGDAVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LGSHV+Q GS + PD LRFD +H KPI++ EL +E+ N+II QN PV TR+M +DA Sbjct: 577 TLGSHVAQKGSLVAPDRLRFDFSHPKPISAEELAKVENLANEIILQNAPVSTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ ++G +S LCGGTHV TG+I L+ IVSE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKEGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RR+EA+TG+ AR +L QDE++K++A LK + + RV + +E +KL +L Sbjct: 697 AVAAGVRRMEALTGEAARLYLEEQDERVKAIAGALKTTPAEALERVNALLDERKKLEREL 756 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A++KL L + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSADGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ ++ KAS + VTEDLL RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 GVGEDDKASAVAAVTEDLLGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870 >gi|306840334|ref|ZP_07473106.1| alanyl-tRNA synthetase [Brucella sp. BO2] gi|306289733|gb|EFM60922.1| alanyl-tRNA synthetase [Brucella sp. BO2] Length = 885 Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/894 (53%), Positives = 629/894 (70%), Gaps = 36/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 AAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V +G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ IVSE Sbjct: 637 ITEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL +L Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A++KL L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870 >gi|260460847|ref|ZP_05809097.1| alanyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075] gi|259033424|gb|EEW34685.1| alanyl-tRNA synthetase [Mesorhizobium opportunistum WSM2075] Length = 888 Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust. Identities = 478/913 (52%), Positives = 639/913 (69%), Gaps = 43/913 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F++ GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRREGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKEF L Sbjct: 61 ATTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 KKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS EE G+R++E WNLVFMQ+EQ K+ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+HLI + G + + ++RVI DHLRSSSFL+ADG+LP+NEGRGY Sbjct: 241 VESVFETDLFRHLIDVASSALGRAPDAETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+PAL EMG AYPEL++ + LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLITETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LL L ++L+G+ AFKLYDT+G PLD+ QD L R ++ +D+ F Sbjct: 361 KTLVRGLGLLSEATETLTAGDMLDGETAFKLYDTYGFPLDLTQDALRQRSIS-VDLAGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q++ AR H G G TE +WFS++EK GAT+F+GY+ Sbjct: 420 NAMEQQKAEARKHWTGSGEAATETVWFSVREKTGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V+A+V+ G+ V+ A G V VV +QTPFY E+GGQ+GDTG G+G Sbjct: 462 -----TEQAEGLVQALVKDGKTVDSAGKGDAVAVVVNQTPFYGESGGQMGDTGIISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I+D QKKA+G+FVH V G ++ ++ L +D+ R +L NHSATHL+H AL Sbjct: 517 SIEISDTQKKADGLFVHLGTVASGTVKVGAAVELKVDHARRSRLRANHSATHLIHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFD++H+KPI+ +L+ +E N+I+ QN PV TR+++ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDISHNKPISPEDLEEVERMANEIVVQNGPVTTRLISVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVH--------SSALCGGTHVSSTGEIMLLYIV 711 IA GA AL G KY D VRVVS+ GVH S LCGGTHV +TG+I L+ +V Sbjct: 637 IAEGAMALFGEKYGDEVRVVSM---GTGVHGAKANRPYSVELCGGTHVRATGDIGLVRVV 693 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 S+S++ AG+RRIEA+TG+ AR HL QD +LK+ A+ LK+S +V RVE + EE +KL Sbjct: 694 SDSAVAAGVRRIEALTGEAARKHLDEQDRRLKATAAVLKISPADVPARVETLLEERKKLE 753 Query: 771 -QLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 +L A++KL L + +A V F+ ++S V K+LK + DA + + SG+ Sbjct: 754 KELTEARKKLALGGGAAAGAPSENETVAGVGFLGKMVSGVSPKDLKPLADAGKTSLGSGV 813 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++ VG ++ KASV++ VT+DL+ RF+AVDL R+++ LGG GGGGRP MAQ+GGP+ +K Sbjct: 814 VVFVGAGEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASK 873 Query: 885 ADQAIAGVASFLK 897 A AIA V + L+ Sbjct: 874 AGDAIAAVRAALE 886 >gi|225852697|ref|YP_002732930.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457] gi|256263812|ref|ZP_05466344.1| alanyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9] gi|225641062|gb|ACO00976.1| alanyl-tRNA synthetase [Brucella melitensis ATCC 23457] gi|263093940|gb|EEZ17874.1| alanyl-tRNA synthetase [Brucella melitensis bv. 2 str. 63/9] gi|326409221|gb|ADZ66286.1| alanyl-tRNA synthetase [Brucella melitensis M28] gi|326538929|gb|ADZ87144.1| alanyl-tRNA synthetase [Brucella melitensis M5-90] Length = 885 Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/894 (53%), Positives = 629/894 (70%), Gaps = 36/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKGKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL +L Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A++KL L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870 >gi|17987072|ref|NP_539706.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|23502078|ref|NP_698205.1| alanyl-tRNA synthetase [Brucella suis 1330] gi|62290112|ref|YP_221905.1| alanyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941] gi|82700035|ref|YP_414609.1| alanyl-tRNA synthetase [Brucella melitensis biovar Abortus 2308] gi|161619156|ref|YP_001593043.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365] gi|163843466|ref|YP_001627870.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445] gi|189024350|ref|YP_001935118.1| Alanyl-tRNA synthetase, class Iic [Brucella abortus S19] gi|225627671|ref|ZP_03785708.1| alanyl-tRNA synthetase [Brucella ceti str. Cudo] gi|237815619|ref|ZP_04594616.1| alanyl-tRNA synthetase [Brucella abortus str. 2308 A] gi|254689421|ref|ZP_05152675.1| alanyl-tRNA synthetase [Brucella abortus bv. 6 str. 870] gi|254693906|ref|ZP_05155734.1| alanyl-tRNA synthetase [Brucella abortus bv. 3 str. Tulya] gi|254697556|ref|ZP_05159384.1| alanyl-tRNA synthetase [Brucella abortus bv. 2 str. 86/8/59] gi|254701941|ref|ZP_05163769.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|254704486|ref|ZP_05166314.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|254706618|ref|ZP_05168446.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10] gi|254710272|ref|ZP_05172083.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|254730450|ref|ZP_05189028.1| alanyl-tRNA synthetase [Brucella abortus bv. 4 str. 292] gi|256031766|ref|ZP_05445380.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|256044851|ref|ZP_05447755.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|256061281|ref|ZP_05451431.1| alanyl-tRNA synthetase [Brucella neotomae 5K33] gi|256159936|ref|ZP_05457654.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1] gi|256255167|ref|ZP_05460703.1| alanyl-tRNA synthetase [Brucella ceti B1/94] gi|256257667|ref|ZP_05463203.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|256369625|ref|YP_003107135.1| alanyl-tRNA synthetase [Brucella microti CCM 4915] gi|260168900|ref|ZP_05755711.1| alanyl-tRNA synthetase [Brucella sp. F5/99] gi|260546661|ref|ZP_05822400.1| alanyl-tRNA synthetase [Brucella abortus NCTC 8038] gi|260565546|ref|ZP_05836030.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|260566269|ref|ZP_05836739.1| alanyl-tRNA synthetase [Brucella suis bv. 4 str. 40] gi|260754944|ref|ZP_05867292.1| alanine-tRNA ligase [Brucella abortus bv. 6 str. 870] gi|260758160|ref|ZP_05870508.1| alanine-tRNA ligase [Brucella abortus bv. 4 str. 292] gi|260761986|ref|ZP_05874329.1| alanine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59] gi|260883954|ref|ZP_05895568.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|261214196|ref|ZP_05928477.1| alanine-tRNA ligase [Brucella abortus bv. 3 str. Tulya] gi|261222364|ref|ZP_05936645.1| alanyl-tRNA synthetase [Brucella ceti B1/94] gi|261314078|ref|ZP_05953275.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10] gi|261317834|ref|ZP_05957031.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|261325289|ref|ZP_05964486.1| alanyl-tRNA synthetase [Brucella neotomae 5K33] gi|261752508|ref|ZP_05996217.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|261755167|ref|ZP_05998876.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|261758391|ref|ZP_06002100.1| alanyl-tRNA synthetase [Brucella sp. F5/99] gi|265988865|ref|ZP_06101422.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|265991279|ref|ZP_06103836.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|265998329|ref|ZP_06110886.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1] gi|297248508|ref|ZP_06932226.1| alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196] gi|54039648|sp|P67009|SYA_BRUSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|54042023|sp|P67008|SYA_BRUME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|75496699|sp|Q57CU0|SYA_BRUAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123547531|sp|Q2YRU8|SYA_BRUA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205829996|sp|A9M5L7|SYA_BRUC2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205829998|sp|B0CGZ9|SYA_BRUSI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|17982730|gb|AAL51970.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|23348036|gb|AAN30120.1| alanyl-tRNA synthetase [Brucella suis 1330] gi|62196244|gb|AAX74544.1| AlaS, alanyl-tRNA synthetase [Brucella abortus bv. 1 str. 9-941] gi|82616136|emb|CAJ11179.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase, DHHA1:Alanyl-transfer RNA synthetase [Brucella melitensis biovar Abortus 2308] gi|161335967|gb|ABX62272.1| alanyl-tRNA synthetase [Brucella canis ATCC 23365] gi|163674189|gb|ABY38300.1| alanyl-tRNA synthetase [Brucella suis ATCC 23445] gi|189019922|gb|ACD72644.1| Alanyl-tRNA synthetase, class Iic [Brucella abortus S19] gi|225617676|gb|EEH14721.1| alanyl-tRNA synthetase [Brucella ceti str. Cudo] gi|237788917|gb|EEP63128.1| alanyl-tRNA synthetase [Brucella abortus str. 2308 A] gi|255999787|gb|ACU48186.1| alanyl-tRNA synthetase [Brucella microti CCM 4915] gi|260095711|gb|EEW79588.1| alanyl-tRNA synthetase [Brucella abortus NCTC 8038] gi|260151614|gb|EEW86708.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. 16M] gi|260155787|gb|EEW90867.1| alanyl-tRNA synthetase [Brucella suis bv. 4 str. 40] gi|260668478|gb|EEX55418.1| alanine-tRNA ligase [Brucella abortus bv. 4 str. 292] gi|260672418|gb|EEX59239.1| alanine-tRNA ligase [Brucella abortus bv. 2 str. 86/8/59] gi|260675052|gb|EEX61873.1| alanine-tRNA ligase [Brucella abortus bv. 6 str. 870] gi|260873482|gb|EEX80551.1| alanyl-tRNA synthetase [Brucella abortus bv. 9 str. C68] gi|260915803|gb|EEX82664.1| alanine-tRNA ligase [Brucella abortus bv. 3 str. Tulya] gi|260920948|gb|EEX87601.1| alanyl-tRNA synthetase [Brucella ceti B1/94] gi|261297057|gb|EEY00554.1| alanyl-tRNA synthetase [Brucella pinnipedialis B2/94] gi|261301269|gb|EEY04766.1| alanyl-tRNA synthetase [Brucella neotomae 5K33] gi|261303104|gb|EEY06601.1| alanyl-tRNA synthetase [Brucella pinnipedialis M163/99/10] gi|261738375|gb|EEY26371.1| alanyl-tRNA synthetase [Brucella sp. F5/99] gi|261742261|gb|EEY30187.1| alanyl-tRNA synthetase [Brucella suis bv. 5 str. 513] gi|261744920|gb|EEY32846.1| alanyl-tRNA synthetase [Brucella suis bv. 3 str. 686] gi|262552797|gb|EEZ08787.1| alanyl-tRNA synthetase [Brucella ceti M490/95/1] gi|263002063|gb|EEZ14638.1| alanyl-tRNA synthetase [Brucella melitensis bv. 1 str. Rev.1] gi|264661062|gb|EEZ31323.1| alanyl-tRNA synthetase [Brucella pinnipedialis M292/94/1] gi|297175677|gb|EFH35024.1| alanyl-tRNA synthetase [Brucella abortus bv. 5 str. B3196] Length = 885 Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/894 (53%), Positives = 629/894 (70%), Gaps = 36/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL +L Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A++KL L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870 >gi|148560301|ref|YP_001259121.1| alanyl-tRNA synthetase [Brucella ovis ATCC 25840] gi|205829997|sp|A5VQX4|SYA_BRUO2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148371558|gb|ABQ61537.1| alanyl-tRNA synthetase [Brucella ovis ATCC 25840] Length = 885 Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/894 (53%), Positives = 629/894 (70%), Gaps = 36/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ V + +E +KL +L Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDHVNALIDERKKLEREL 756 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A++KL L + D + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGDSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870 >gi|13470354|ref|NP_101920.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099] gi|20532259|sp|Q98NQ5|SYA_RHILO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|14021093|dbj|BAB47706.1| alanyl-tRNA synthetase [Mesorhizobium loti MAFF303099] Length = 888 Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/902 (52%), Positives = 636/902 (70%), Gaps = 37/902 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+K GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRKEGHEVVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKEF L Sbjct: 61 ATTAQKSVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 KKDKLLVTVYHTDDEAAGFWKKIAGFSDDRIIRIATSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS EE G+R++E WNLVFMQ+EQ K+ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHVWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERIDLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+HLI A+ G + + ++RVI DHLRSSSFL+ADG+LP+NEGRGY Sbjct: 241 VESVFETDLFRHLIDAASSALGRAPDAETVASYRVIADHLRSSSFLVADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+PAL EMG AYPEL++ + L+ ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGANEPLMWKLVPALVREMGQAYPELLRGEQLVTETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LL L ++L+G+ AFKLYDT+G PLD+ QD L R ++ +D+ F Sbjct: 361 KTLVRGLGLLSEATETLHAGDMLDGETAFKLYDTYGFPLDLTQDALRQRNIS-VDLAGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q++ AR H G G TE +WFS++E+ GAT+F+GY+ Sbjct: 420 NAMEQQKAEARKHWTGSGEAATETVWFSVREQTGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++A+V+ G+ V+ A G V VV +QTPFY E+GGQ+GDTG G+G Sbjct: 462 -----TEQAEGLIQALVKDGKTVDSAGKGDAVAVVVNQTPFYGESGGQMGDTGIISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I+D QKKA+G+FVH V G ++T ++ L +D+ R +L NHSATHL+H AL Sbjct: 517 SIEISDTQKKADGLFVHLGKVASGTVKTGAAVELKVDHARRTRLRANHSATHLIHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFD++H+KPI++ EL+ +E N+I+ QN PV TR+M+ +DA Sbjct: 577 VLGTHVAQKGSLVAPERLRFDISHNKPISAEELEEVERMANEIVVQNSPVTTRLMSVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ G +S LCGGTHV +TG+I L+ +VS+S Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTGLHGAKANRPYSVELCGGTHVRATGDIGLVRVVSDS 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772 ++ AG+RRIEA+TG+ AR HL QD +LK+ A+ LK+S +V RVE + EE +KL+ L Sbjct: 697 AVAAGVRRIEALTGEAARKHLDEQDRRLKAAAATLKISPADVPARVEALLEERKKLEKDL 756 Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A++KL L + +A V F+ +S V K+LK + DA + + SG+++ Sbjct: 757 TEARKKLALGGGAAAGAPSENETVAGVGFLGKAVSGVSPKDLKPLADAGKSSLGSGVVVF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 VG ++ KASV++ VT+DL+ RF+AVDL R+++ LGG GGGGRP MAQ+GGP+ +KA+ Sbjct: 817 VGADEDNKASVVVAVTDDLVGRFSAVDLVRVASAALGGQGGGGRPDMAQAGGPDASKAND 876 Query: 888 AI 889 AI Sbjct: 877 AI 878 >gi|294852536|ref|ZP_06793209.1| alanyl-tRNA synthetase [Brucella sp. NVSL 07-0026] gi|294821125|gb|EFG38124.1| alanyl-tRNA synthetase [Brucella sp. NVSL 07-0026] Length = 885 Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/894 (53%), Positives = 629/894 (70%), Gaps = 36/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGLAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVANQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL +L Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A++KL L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870 >gi|254714269|ref|ZP_05176080.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1] gi|261322043|ref|ZP_05961240.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1] gi|261294733|gb|EEX98229.1| alanyl-tRNA synthetase [Brucella ceti M644/93/1] Length = 885 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/894 (53%), Positives = 628/894 (70%), Gaps = 36/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL +L Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A++KL L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870 >gi|254719259|ref|ZP_05181070.1| alanyl-tRNA synthetase [Brucella sp. 83/13] gi|265984258|ref|ZP_06096993.1| alanyl-tRNA synthetase [Brucella sp. 83/13] gi|306838009|ref|ZP_07470867.1| alanyl-tRNA synthetase [Brucella sp. NF 2653] gi|264662850|gb|EEZ33111.1| alanyl-tRNA synthetase [Brucella sp. 83/13] gi|306406933|gb|EFM63154.1| alanyl-tRNA synthetase [Brucella sp. NF 2653] Length = 885 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/894 (53%), Positives = 628/894 (70%), Gaps = 36/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAINFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAEALISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 AAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+ Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEDF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V +G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTKGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ IVSE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIVSEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL +L Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A++KL L + + + VNF+ I++ V +LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVLPHDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGTGGGGRPDMAQAGGPDG 870 >gi|256113755|ref|ZP_05454559.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] gi|265995116|ref|ZP_06107673.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] gi|262766229|gb|EEZ12018.1| alanyl-tRNA synthetase [Brucella melitensis bv. 3 str. Ether] Length = 885 Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/894 (53%), Positives = 628/894 (70%), Gaps = 36/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MAGVNEIRSTFLDYFRKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISFAWNLITREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI+A E+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIRALEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D FN Sbjct: 361 KTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 420 VAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ ++V+ G V G+ + VV +QTPFY E+GGQ GDTG G+G Sbjct: 462 -----TESAEGVIASLVRDGVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH AL Sbjct: 517 VIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M +DA Sbjct: 577 TLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+SE Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRIISEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL +L Sbjct: 697 GVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLEREL 756 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A++KL L + + + VNF+ I++ V ++LK + D +K++ SG+++ + Sbjct: 757 ADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVVLFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 GVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 870 >gi|49475765|ref|YP_033806.1| alanyl-tRNA synthetase [Bartonella henselae str. Houston-1] gi|59798532|sp|Q6G2Z4|SYA_BARHE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49238572|emb|CAF27813.1| Alanyl-tRNA synthetase [Bartonella henselae str. Houston-1] Length = 887 Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/912 (53%), Positives = 655/912 (71%), Gaps = 41/912 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+SIR+TFL++FQ NGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E+ Y+ Sbjct: 1 MNSVNSIRSTFLDYFQLNGHKIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPYKQ 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+W+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFLSWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+ + +LW+KISGL +KI+RI T DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PEDKLLVTVYHNDDVSTELWRKISGLPDEKIVRIATADNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ NK++R LP SIDTGMGLER+A VLQ Sbjct: 181 DEIWGGPPGSAYEDGDRFIEIWNLVFMQYEQVNKEKRVELPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI S+++TG+K G+ I +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 GHDNYDIDLFRALIAVSQEITGVKATGDFIASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM LLP L EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMWRLLPVLIHEMGQAYPELVRAESLISETLKLEEIRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL + L + + LNG++AFKLYDT+G PLD+ QD L RG++ +D+ +FN Sbjct: 361 KTLERGLGLLSEASTDLKEGDHLNGEIAFKLYDTYGFPLDLTQDALRCRGIS-VDVAAFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q+++ARA+ G G TE IWFS++++ GAT+F+GY+ Sbjct: 420 KAMEGQKAKARANWSGSGETVTEAIWFSVRDQLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+V+ GEIV++ SGQK +V +QTPFY E+GGQ+GD+G G Sbjct: 462 -----TEKSEGILTALVRDGEIVDDISSGQKAILVVNQTPFYGESGGQIGDSGTISGKNF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKKA+G+F+H V+ G R + LT+D R+++ +NHSATHLLH AL Sbjct: 517 VFEVHDTQKKADGVFIHIGEVKSGQARMSECVELTVDGVRRKKIRVNHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHV+Q GS ++PD LRFD +H K ++ EL+ IED N+I+ QN V TR+M +DA Sbjct: 577 VLGSHVTQKGSLVSPDRLRFDFSHPKSVSLEELEKIEDLANEIVLQNSEVTTRLMLVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSS---ALCGGTHVSSTGEIMLLYIVSES 714 I+ GA AL G KY D VRVVS+ E G + S LCGGTHV TG+I L++IVSES Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGNRLEKGKLKSRWSIELCGGTHVERTGDIGLIHIVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-I 773 S+ AG+RRIEA+TG AR +L QD ++ +A LK S +V RV + E+ RKL+ + Sbjct: 697 SVAAGVRRIEALTGTAARLYLSRQDARVHEIADLLKTSATDVEERVRILLEDRRKLEKEL 756 Query: 774 HAKRK--------LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +RK ++ + ED++ I ++FM ++ + ++LK+++D+ +KKI SG++ Sbjct: 757 NDERKKSVLSGGIVKSDQEDITI--INGISFMGRVVKNISPRDLKTLVDSGKKKIGSGVV 814 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +G+S++ K S ++ VT+DL + NAVDL R+ + +LGG GGGGRP MAQSGGP GNKA Sbjct: 815 AFIGVSEDGKGSAVLGVTDDLTHKLNAVDLVRILSGILGGQGGGGRPDMAQSGGPKGNKA 874 Query: 886 DQAIAGVASFLK 897 D+A+A + + L+ Sbjct: 875 DEALAVLKASLE 886 >gi|240850806|ref|YP_002972206.1| alanyl-tRNA synthetase [Bartonella grahamii as4aup] gi|240267929|gb|ACS51517.1| alanyl-tRNA synthetase [Bartonella grahamii as4aup] Length = 890 Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/911 (53%), Positives = 650/911 (71%), Gaps = 37/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V++IR+ FL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+P Y+ Sbjct: 1 MNSVNNIRSIFLDYFHRNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQPPYKQ 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI L+W+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAILLSWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+ A +LW++ISGL +KI+RI T DNFWSM ETGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYQSDDVAAELWRRISGLPDEKIVRIATADNFWSMGETGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQ+EQ ++++R LP SIDTGMGLER+A VLQ Sbjct: 181 DEIWGGPPGSMEEDGDRFIEIWNLVFMQYEQISQEKRVDLPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI ASE++TG++ +G+ I +HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFRALIAASEEITGIEAKGDFIASHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPL+ LLPAL EMG AYPEL++A+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLLWRLLPALNREMGQAYPELVRAESLISETLRLEEIRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ + L + + LNG+VAFKLYDT+G PLD+ QD+L RG++ +D+ +F+ Sbjct: 361 KTLERGLGLLNEASTDLKEGDHLNGEVAFKLYDTYGFPLDLTQDVLRRRGIS-VDVDTFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q+ ARA+ G G TEKIWFS+++K GAT+F+GY+ Sbjct: 420 KAMERQKEEARANWSGSGEAVTEKIWFSVRDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+V G++V+ SGQK +V +QTPFY E+GGQ+GD+G G+ Sbjct: 462 -----TETAKGILTALVCDGKLVDHISSGQKAMLVVNQTPFYGESGGQIGDSGIISGENF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D Q+K +G+F+H V+ G + LT+D R+++ NHSATHLLH AL Sbjct: 517 IFEVHDTQRKGDGVFIHIGEVKSGQASRSDCVELTVDVVRRKKIRGNHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHV+Q GS ++PD LRFD +H K ++ ELK IED N+II QN V+TR+M +DA Sbjct: 577 VLGSHVTQKGSLVSPDRLRFDFSHPKSVSPEELKKIEDLANEIILQNSRVITRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVS----VEYEDGGVHSS-ALCGGTHVSSTGEIMLLYIVSES 714 I+ GA AL G KY D VRVVS +E H S LCGGTHV TG+I L++I SES Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGEPLEQRRLKKHWSIELCGGTHVERTGDIGLIHIFSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 S+ AG+RRIEA+TG+ AR +L QDE++ +A LK S V RV + ++ RKL +L Sbjct: 697 SVSAGVRRIEALTGKEARLYLSRQDERIHEIADLLKTSSAGVEERVRILLDDRRKLEKEL 756 Query: 773 IHAKRKLQLN--VEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++K+ L+ + + S I +N F ++ + ++LK+++D+ +K+I SG++ Sbjct: 757 NDVRKKMMLSGGITERSQGDITIINGLSFTGRVVKNILPRDLKALVDSEKKQIGSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + +S++ K S ++ VT+DL D+ NAVDL + + +LGG GGGGRP MAQ+GGP GNKAD+ Sbjct: 817 ISVSEDGKGSAVVGVTDDLTDKLNAVDLVHILSGMLGGKGGGGRPDMAQAGGPEGNKADE 876 Query: 888 AIAGVASFLKK 898 A A + FL+K Sbjct: 877 AFAALKDFLEK 887 >gi|319404395|emb|CBI77998.1| Alanyl-tRNA synthetase [Bartonella rochalimae ATCC BAA-1498] Length = 887 Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/910 (52%), Positives = 644/910 (70%), Gaps = 37/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+SIR+ FL++F++NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG E+ Y+ Sbjct: 1 MNSVNSIRSAFLDYFRRNGHEILSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQYPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 Q +L +TVY D A +LW+KISGL +KIIRI TNDNFWSM +TGPCGPCSEIF+D G Sbjct: 121 SQDKLLVTVYHTDNIAAELWRKISGLPNEKIIRIATNDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ NK+ER LP SIDTGMGLER+A VLQ Sbjct: 181 DEIFGGPPGSANEDGDRFIEIWNLVFMQYEQVNKEERTELPCPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF LI AS+++TG+K G + +HRVI DHLRSS+FLI+DG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFCKLIHASQEITGIKATGEFVASHRVIADHLRSSAFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG E LM LLP L EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMKKLLPVLIREMGQAYPELVRAESLISEILKLEETRFH 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ V L + + L+G+VAFKLYDT+G PLD+ QD L RG++ +DI +F Sbjct: 361 KTLERGLSLLNEVSIDLKEGDHLDGEVAFKLYDTYGFPLDLTQDALRCRGIS-VDIDAFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q++ RA+ G G+ TE IWFS+++K GAT+F+GY+ Sbjct: 420 KAMELQKAENRANWSGSGASITETIWFSIRDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ A+V GEIV+ SGQ +V +QTPFYAE+GGQ+GD+G G+ Sbjct: 462 -----TEKAEGVITALVCDGEIVDHISSGQDAMLVVNQTPFYAESGGQVGDSGVISGESF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D Q++ +G+F+H V+ G + + L++D + RR++ NHSATHLLH AL Sbjct: 517 VFEVHDTQRRGDGVFIHIGEVKSGQAQISDCVELSVDSERRRKIRANHSATHLLHEALRC 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG H++Q GS ++P LRFD +H KPI+S ELK +ED NDI+ QN V TR+M +DA Sbjct: 577 ILGPHIAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSKVTTRLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV----EYEDGGVHSS-ALCGGTHVSSTGEIMLLYIVSES 714 I GA AL G KY D VRVVS+ E + H S LCGGTHV TG+I L++IV ES Sbjct: 637 ILGGAMALFGEKYGDEVRVVSMGERCEPTELTRHWSIELCGGTHVQRTGDIGLIHIVGES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 S+ +G+RRIEA+TG AR +L QD+++ +ASFLK S N+ R+ + ++ RK +L Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEMASFLKTSPANLEERIRNLLDDRRKFEKEL 756 Query: 773 IHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + ++ + LN L K I ++FM ++ + ++LK+++D+ +K+I+SG++ Sbjct: 757 NNTRKNVALNGGALQGRKEDITIINGISFMGGVLRNIAVRDLKALVDSGKKQIKSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + +S++ K S ++ VT+DL++ NAVDL R+ + VLGG GGGGRP MAQ+GG G+KAD+ Sbjct: 817 ISVSEDGKGSAVVGVTDDLINMLNAVDLVRVVSTVLGGQGGGGRPDMAQAGGSKGDKADE 876 Query: 888 AIAGVASFLK 897 AI + +FLK Sbjct: 877 AITALKAFLK 886 >gi|209884575|ref|YP_002288432.1| alanyl-tRNA synthetase [Oligotropha carboxidovorans OM5] gi|209872771|gb|ACI92567.1| alanyl-tRNA synthetase [Oligotropha carboxidovorans OM5] Length = 909 Score = 941 bits (2433), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/910 (52%), Positives = 624/910 (68%), Gaps = 38/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR++FL FF KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 22 MSGVNEIRSSFLNFFAKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKLPYQR 81 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TKEF L Sbjct: 82 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKDRAIELAWTLITKEFGL 141 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ ED+EA LWKKI+GL K+IRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 142 PKDRLLVTVFSEDDEAASLWKKIAGLPDSKVIRIATSDNFWQMGDTGPCGPCSEIFFDHG 201 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + +PGG PGS E+G+R+IEIWNLVFMQFEQ R LP SIDTGMGLERMA VLQ Sbjct: 202 DKVPGGPPGSPDEDGDRFIEIWNLVFMQFEQTAGGVRTPLPHPSIDTGMGLERMAAVLQG 261 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NY+IDLF LI+A +TG G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 262 KHDNYEIDLFVALIRAISDLTGTDPHGPQKASLRVIADHLRASSFLIADGVLPSNEGRGY 321 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL EMG AYPEL++A+ L+EETL+ E+ RF Sbjct: 322 VLRRIMRRAMRHAQLLGAKEPLMYRLVWALVREMGQAYPELVRAESLVEETLKLEETRFR 381 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L ++ +G+ AF LYDT+G PLD+ QD L RG+ +D+ SF Sbjct: 382 KTLDRGLAILDEKSASLKPGDMFDGETAFTLYDTYGFPLDLTQDALRTRGIH-VDLASFT 440 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q+++ARA G G EK+WF L E+ GAT+F+GYD Sbjct: 441 DAMEQQKAKARASWAGSGDAAAEKVWFPLHEELGATEFLGYD------------------ 482 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538 T +V A+V+ G +V+ +G VV +QTPFY E+GGQ+GDTG GD G Sbjct: 483 -----TEIAEGVVTALVKDGAVVDSLNAGDAAAVVLNQTPFYGESGGQVGDTGILTGDGG 537 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +R ++TD QKKA +FVH +E+G L+ +L L +D+ R + NHSATHLLH AL Sbjct: 538 VRFRVTDTQKKAGDLFVHVGTLEQGALKKGAALQLEVDHTRRGAIRANHSATHLLHEALR 597 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG H++Q GS ++P+ LRFD H+KPI + EL+ IED NDI+ QN V TR+M +D Sbjct: 598 QVLGDHIAQRGSLVSPERLRFDFAHTKPIAADELRRIEDIANDIVLQNSEVTTRLMGLDD 657 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSI 716 A +SGA AL G KY D VRVVS+ G S LCGGTHV TG+I L+ I ES++ Sbjct: 658 ARSSGARALFGEKYGDEVRVVSMGQTSGNALGWSVELCGGTHVKRTGDIGLVSITGESAV 717 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 +G+RRIEA+TG+ AR E K+ A+ LK + ++ RV + EE +KL+ L Sbjct: 718 ASGVRRIEALTGRAARHAANHSIETAKAAAAELKTTLEDMPARVAALVEERKKLERDLSD 777 Query: 775 AKRKLQLNVEDL--------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A++KL + + DV ++ + ++ K+LKS+ D +K++ SG++ Sbjct: 778 ARKKLAMGGGAGGNGSTAASDVRNVGDVKLLARAVQGIEVKDLKSLADQGKKQLGSGVVA 837 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 LV S++ KASV++ VT DL RFNAVDL R +++VLGG GGGG+P MAQ+GGP+G+KAD Sbjct: 838 LVATSEDGKASVVVGVTPDLTSRFNAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSKAD 897 Query: 887 QAIAGVASFL 896 A+ + + + Sbjct: 898 AALKAIEAAM 907 >gi|299131739|ref|ZP_07024934.1| alanyl-tRNA synthetase [Afipia sp. 1NLS2] gi|298591876|gb|EFI52076.1| alanyl-tRNA synthetase [Afipia sp. 1NLS2] Length = 888 Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/910 (53%), Positives = 622/910 (68%), Gaps = 38/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL FF KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNEIRSGFLNFFAKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TK+F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKDRAIELAWTLITKDFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY ED+EAF LWKKI+GL +I+RI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 121 PKDRLLVTVYAEDDEAFGLWKKIAGLPESRIVRIGTSDNFWQMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + +PGG PGS E+G+R+IEIWNLVFMQF+Q R LP SIDTGMGLER+A VLQ Sbjct: 181 DKVPGGPPGSPDEDGDRFIEIWNLVFMQFDQIAPGNRNPLPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A +TG G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAISDLTGADPHGAQKASLRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +PLM L+ AL EMG AYPEL++A+ LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKDPLMHRLVWALVREMGQAYPELVRAEALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L RG+ G+D+ SF Sbjct: 361 KTLDRGLAILDEKSAALHKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-GVDLASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q+++ARA G G EKIWF L+E+ GAT+F+GYD Sbjct: 420 DAMERQKAKARASWAGSGDTAAEKIWFPLREELGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538 T +V A+V+ G VE +G VV +QTPFY E+GGQ+GDTG GD G Sbjct: 462 -----TEIAEGVVTALVKDGASVESLKAGDAASVVLNQTPFYGESGGQVGDTGVLTGDGG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +R ++TD QKKA +FVH +E+G L+ L L +D+ R + NHSATHLLH AL Sbjct: 517 VRFRVTDTQKKAGDLFVHIGQLEQGTLKKGAPLQLEVDHARRGAIRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG H++Q GS ++P+ LRFD H+KPIT EL IED NDI+ +N V TR+M ED Sbjct: 577 QVLGDHIAQRGSLVSPERLRFDFAHTKPITPDELSRIEDIANDIVLENGEVTTRLMGIED 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSI 716 A +SGA AL G KY D VRVVS+ G S LCGGTHV TG+I L+ I ES++ Sbjct: 637 ARSSGARALFGEKYGDEVRVVSMGQGSGNALGWSVELCGGTHVRRTGDIGLVSITGESAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 +G+RRIEA+TG+ AR + K+ A+ LK + ++ R+ + EE +KL+ L Sbjct: 697 ASGVRRIEALTGRAARQAANHSIQTAKTAAAELKTTLEDMPVRIAALIEERKKLERDLSE 756 Query: 775 AKRKL--------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A++KL + DV ++ + V+ K+LKS+ D +K+I SG++ Sbjct: 757 ARKKLAMGGGGSAGGAAAASDVRSVGDVKLLARAVQGVEVKDLKSLADQGKKQIGSGVVA 816 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 LV S++ KASV++ VT DL RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+KAD Sbjct: 817 LVATSEDGKASVVVGVTPDLTSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSKAD 876 Query: 887 QAIAGVASFL 896 A+ + + + Sbjct: 877 AALKAIEAAM 886 >gi|319405869|emb|CBI79501.1| Alanyl-tRNA synthetase [Bartonella sp. AR 15-3] Length = 889 Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/912 (52%), Positives = 643/912 (70%), Gaps = 39/912 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V++IR+TFL++F++NGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E+ Y+ Sbjct: 1 MNSVNNIRSTFLDYFRRNGHEIISSSPLVPRNDPTLMFTNAGMVQFKNVFTGFEQCPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L ITVY D A +LW+KISGL +KIIRITTNDNFWSM +TGPCGPCSEIF+D G Sbjct: 121 SKDKLLITVYHTDNIAAELWRKISGLPNEKIIRITTNDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS+ E+G+R+IEIWNLVFMQ+EQ NK+ER LP SIDTGMGLER+A VLQ Sbjct: 181 GEIFGGPPGSADEDGDRFIEIWNLVFMQYEQVNKEERIELPCPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF LI AS+++TG+K G I +HRVI DHLRSS+FLI+DG+LP+NEGRGY Sbjct: 241 VHDNYDTDLFCKLISASQEITGVKATGEFIASHRVIADHLRSSAFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG E LM LLP L EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHFLGAKELLMEQLLPVLIREMGQAYPELVRAEALISEILKLEETRFH 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ + L + + +G+VAFKLYDT+G PLD+ QD L RG++ +DI +F Sbjct: 361 KTLERGLSLLNEASTDLKEGDHFDGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDIEAFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q++ RA+ G G+ TE IWFS++++ G T+F+GY+ Sbjct: 420 KAMELQKAENRANWSGSGASVTETIWFSIRDQVGTTEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ A++ GEIV+ SGQ +V +QTPFYAE+GGQ+GD+G G+ Sbjct: 462 -----TEKAEGVITALICDGEIVDHISSGQDAMLVVNQTPFYAESGGQIGDSGVISGESF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D Q++ +G+F+H V+ G + + LT+D + RR++ NHSATHLLH AL Sbjct: 517 VFEVRDTQRRGDGVFIHIGKVKSGQAKISDCVELTVDSERRRKIRANHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG HV+Q GS ++P LRFD +H KPI+S ELK +ED NDI+ QN V TR+M +DA Sbjct: 577 ILGPHVAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSQVTTRLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVH-----SSALCGGTHVSSTGEIMLLYIVSES 714 + GA AL G KY D VRVVS+ + S LCGGTHV TG+I L++IV+ES Sbjct: 637 VFEGAVALFGEKYGDEVRVVSMGERCEPIALKKHWSIELCGGTHVQRTGDIGLIHIVAES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 S+ +G+RRIEA+TG AR +L QD+++ +ASFLK+S N+ RV ++ + RK +L Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEIASFLKISPANLEERVRNLFNDRRKFEKEL 756 Query: 773 IHAKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + ++ + LN + L K I ++FM ++ + ++LK+++D+ +K+I+SG++ Sbjct: 757 NNTRKNVVLNGKALQGRKGEITTININGISFMGGVLRNIAIRDLKTLVDSGKKQIKSGVV 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 V +S++ K S ++ VT+DL++ NAVDL R+ + VLGG GGGGRP MAQ+GG G+KA Sbjct: 817 AFVSVSEDGKGSAVVGVTDDLINMLNAVDLVRIVSVVLGGQGGGGRPDMAQAGGSKGDKA 876 Query: 886 DQAIAGVASFLK 897 ++AI + +FLK Sbjct: 877 EEAITALKAFLK 888 >gi|118588631|ref|ZP_01546039.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase, DHHA1:Alanyl-transfer RNA synthetase [Stappia aggregata IAM 12614] gi|118438617|gb|EAV45250.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase, DHHA1:Alanyl-transfer RNA synthetase [Stappia aggregata IAM 12614] Length = 885 Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/907 (51%), Positives = 633/907 (69%), Gaps = 36/907 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+ FL++F+ NGHE++ S L+P NDPTLMF N+GM FKN+FTG EK Y Sbjct: 1 MTGVNEIRSAFLDYFKTNGHEVVESGPLVPRNDPTLMFANAGMNQFKNVFTGLEKRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L Sbjct: 61 AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TV+ ED++AF LWKKI+GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PKEKLLVTVFAEDDQAFDLWKKIAGLSEDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQ+E Q ++R LP+ SIDTGMG+ER+A V+Q Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQYE-QTPEKRLDLPRPSIDTGMGIERIAAVMQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLFK LI AS TG++ EG+ +HRVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 240 VHNNYDIDLFKALIAASVNATGVEAEGDATGSHRVIADHLRSTSFLIADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRR M +A LLG +EPLM L+PAL EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 300 VLRRIMRRGMRHAHLLGASEPLMHKLVPALVREMGRAYPELSRAEDLITETLKLEETRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD L L+G+ AFKLYDT+G PLD+ QD L R ++ +D FN Sbjct: 360 KTLERGLGLLDTATEGLEAGGRLDGETAFKLYDTYGFPLDLTQDALRTRDIS-VDTDGFN 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G GS TE +WF+LKEK+GAT F+GY+ Sbjct: 419 AAMERQKAEARAAWSGSGSAATEAVWFALKEKHGATDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V + + V++ +G+ VV +QTPFY E+GGQ+GDTG + G+ Sbjct: 461 -----TETAEGVVAGLAADDKEVDKLSAGESGFVVLNQTPFYGESGGQVGDTGWMLASGV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +T+ QKKA+G+FVH VE G L ++L L +D+ R+ + NHSATHL+H AL Sbjct: 516 KAAVTNTQKKADGLFVHSVTVEEGELVPGLALELKVDHSRRKAIRSNHSATHLVHEALRE 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS +TP+ LRFD +H KP++ EL ++E N+I+ QN PV TR+M +DA Sbjct: 576 VLGNHVAQKGSLVTPERLRFDFSHPKPVSDEELATVESFANEIVLQNAPVDTRLMAVDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I +GA AL G KY + VRVVS+ + G +S LCGGTHV TG+I L+ +VSE Sbjct: 636 IEAGAMALFGEKYGEEVRVVSMGTALHGPKQGKPYSLELCGGTHVKRTGDIGLVTLVSEG 695 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RRIEA+TG AR +L QD++++ LAS LK+S +V RV ++ E+ +KL +L Sbjct: 696 AVAAGVRRIEALTGSEAREYLDAQDKRMRELASLLKISADDVPARVAQLVEDRKKLEREL 755 Query: 773 IHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 AK+KL + + M+ ++ ++ K+LK + D + ++ SG+++L+ Sbjct: 756 ADAKKKLAMGGGADGGTPVKEAGSFKLMARVVEGINPKDLKGMADEAKTQLGSGVVVLIS 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++++ KA+++ VT+DL D+ +AVDL R+ ++ LGG GGGGRP MAQ+GGP+G KA QA+ Sbjct: 816 VAEDDKAAIVTAVTQDLTDKVSAVDLVRIGSEALGGRGGGGRPDMAQAGGPDGAKAAQAV 875 Query: 890 AGVASFL 896 A + + L Sbjct: 876 AVIEAHL 882 >gi|319407395|emb|CBI81046.1| Alanyl-tRNA synthetase [Bartonella sp. 1-1C] Length = 887 Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/910 (52%), Positives = 638/910 (70%), Gaps = 37/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+SIR+ FL++F +NGHE+L SS LIP NDPTLMFTN+GMV FKN+FTG E+ Y+ Sbjct: 1 MNSVNSIRSAFLDYFHRNGHEILSSSPLIPRNDPTLMFTNAGMVQFKNVFTGLEQYPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 Q +L +TVY D A +LW+KISGL +KIIRI TNDNFWSM +TGPCGPCSEIF+D G Sbjct: 121 SQDKLLVTVYHTDNIAAELWRKISGLPNEKIIRIATNDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ NK+ER LP SIDTGMGLER+A VLQ Sbjct: 181 DEIFGGPPGSANEDGDRFIEIWNLVFMQYEQVNKEERTELPCPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF LI S+++TG++ G + +HRVI DHLRSS+FLI+DG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFCKLIHTSQEITGIEATGEFVASHRVIADHLRSSAFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG E LM LLP L EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMEKLLPVLVREMGQAYPELVRAESLISEILKLEETRFH 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ L + + L+G+VAFKLYDT+G PLD+ QD L RG++ +DI +F Sbjct: 361 KTLERGLSLLNEASIDLKEGDHLDGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDIDAFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q++ RA+ G G+ TE IWFS+++K G T+F+GY+ Sbjct: 420 KAMELQKAENRANWSGSGASITETIWFSIRDKVGITEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ A+V GEIV+ SGQ +V +QTPFYAE+GGQ+GD+G G+ Sbjct: 462 -----AEKAEGVITALVCDGEIVDHISSGQDAVLVVNQTPFYAESGGQVGDSGIISGESF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D Q+K +GIF+H V+ G + + L +D + RR++ NHSATHLLH AL Sbjct: 517 VFEVRDTQRKGDGIFIHIGEVKSGRAKISDCVELIVDSERRRKIRANHSATHLLHEALRC 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG HV+Q GS ++P LRFD +H KPI+S ELK +ED NDI+ QN V+TR+M +DA Sbjct: 577 ILGPHVAQKGSLVSPSRLRFDFSHPKPISSEELKRVEDLANDIVLQNSKVITRLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I GA AL G KY D VRVVS+ E S LCGGTHV TG+I L++IV+ES Sbjct: 637 ILGGAMALFGEKYGDEVRVVSMGERCEPIELKKHWSIELCGGTHVQRTGDIGLIHIVAES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 S+ +G+RRIEA+TG AR +L QD+++ +ASFLK S N+ R+ + ++ RK +L Sbjct: 697 SVASGVRRIEALTGTTARLYLRQQDKRIYEMASFLKTSPANLEERIRNLLDDRRKFEKEL 756 Query: 773 IHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + ++ + LN L K I ++FM ++ + ++LK+++D+ +K+I+SG++ Sbjct: 757 NNTRKNVFLNGGALQGKKEEITIINGISFMGRVLRNIAVRDLKTLVDSGKKQIKSGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + IS++ K S ++ VT+DL++ NAVDL R+ + VLGG GGGGRP MAQ+GG G+KAD+ Sbjct: 817 ISISEDGKGSAVVGVTDDLINILNAVDLVRVVSTVLGGQGGGGRPDMAQAGGSKGDKADE 876 Query: 888 AIAGVASFLK 897 AI + +FLK Sbjct: 877 AITALKAFLK 886 >gi|114707288|ref|ZP_01440185.1| alanyl-tRNA synthetase [Fulvimarina pelagi HTCC2506] gi|114537169|gb|EAU40296.1| alanyl-tRNA synthetase [Fulvimarina pelagi HTCC2506] Length = 912 Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/893 (53%), Positives = 629/893 (70%), Gaps = 37/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F KNGHE + SS L+P NDPTLMF N+GMV FKN+FTG+EK Y Sbjct: 22 MSGVNEIRSAFLDYFAKNGHEKVSSSPLVPRNDPTLMFVNAGMVQFKNVFTGEEKRSYSR 81 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW L+TK+F L Sbjct: 82 AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWSLITKDFGL 141 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY ED+EA LWKKI+GLS D+IIRI T+DNFW+M ETGPCGPCSEIFFD G Sbjct: 142 PRDKLLVTVYSEDDEAAGLWKKIAGLSDDRIIRIGTSDNFWTMGETGPCGPCSEIFFDHG 201 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E IPGG PGS +E+G+R+IEIWNLVFMQ+EQ ER LP+ SIDTGMGLER+A VLQ Sbjct: 202 EDIPGGPPGSPNEDGDRFIEIWNLVFMQYEQLAGDERLDLPRPSIDTGMGLERIAAVLQG 261 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI A E G + EG + +HRVI DHLRS++FLIADG+LP+NEGRGY Sbjct: 262 VHDNYDIDLFRTLIAAVENAIGSRAEGAAVASHRVIADHLRSTAFLIADGVLPSNEGRGY 321 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +ARLLG EP++ LLP L EMG AYPEL++ + LI ETL+ E++RF Sbjct: 322 VLRRIMRRAMRHARLLGAGEPVLYKLLPTLIAEMGRAYPELVRGEALIAETLKLEEKRFL 381 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LL +G + L+G+ AFKLYDT+G PLD+ QD L RG+A +D+ +FN Sbjct: 382 QTLDRGLSLLADATEGMGAGQKLSGETAFKLYDTYGFPLDLTQDALRQRGIA-VDLDAFN 440 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ AR G G TEK+WF ++++ GAT+F+GYD Sbjct: 441 TAMERQKAEARKSWAGSGEAATEKVWFPIRDRVGATEFLGYD------------------ 482 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T S V A+VQ G V+ A +G+KV VV +QTPFY E+GGQLGD G Sbjct: 483 -----TEEASGSVVALVQDGAEVKSATAGEKVFVVVNQTPFYGESGGQLGDAGVMTDGET 537 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I D QK A+G+FVH IV+ G + + +L L ++++ R ++ NHSATHLLH L Sbjct: 538 VIEIEDTQKLADGLFVHRGIVKSGEVSVDDALDLKVEHRRRSKIRSNHSATHLLHEGLRE 597 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFD +H KP+ AE++++E N I+ QN PV TR+M ++A Sbjct: 598 VLGTHVAQKGSLVAPERLRFDFSHPKPMDRAEIEAVERLANGIVRQNAPVETRLMAVDEA 657 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I SGA AL G KY D VRVVS+ + G +S+ LCGGTHVS+TGEI ++++V ES Sbjct: 658 IESGAMALFGEKYGDEVRVVSMGTAQEGKKAGKPYSTELCGGTHVSATGEIGVVHVVGES 717 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RRIEA+TG+ AR +L QD++++ +A+ LK S + + R+E + EE R+L+ Sbjct: 718 AVGAGVRRIEALTGEAARDYLREQDQRVRKMAALLKASPEDALARLETVVEERRRLEREL 777 Query: 775 A--KRKLQLNVEDL----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K++L L E S + ++++ +I V ++LK ++D +K +QSG++ V Sbjct: 778 AEVKKRLALAGEGGGKGDSAKTVNGISYLGRVIDGVSGRDLKGLVDEAKKSVQSGVVAFV 837 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G++ E KASV++ VTEDL RF+AV L R ++ +GG GGGGRP MAQ+GGP+ Sbjct: 838 GVA-EGKASVVVGVTEDLTARFDAVTLVRTASGAIGGKGGGGRPDMAQAGGPD 889 >gi|319899070|ref|YP_004159163.1| Alanyl-tRNA synthetase [Bartonella clarridgeiae 73] gi|319403034|emb|CBI76589.1| Alanyl-tRNA synthetase [Bartonella clarridgeiae 73] Length = 887 Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/910 (52%), Positives = 637/910 (70%), Gaps = 37/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+SIR+TFL++F NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK Y+ Sbjct: 1 MNSVNSIRSTFLDYFHHNGHEILSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKYPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIFFAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D A +LW+KISGL +KIIRI TNDNFWSM + GPCGPCSEIF+D G Sbjct: 121 SKDKLLVTVYHTDNVAAELWRKISGLPDEKIIRIATNDNFWSMGDIGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E G+R+IEIWNLVFMQ+EQ NK+ER LP SIDTGMGLER+A VLQ Sbjct: 181 DEIFGGPPGSAYENGDRFIEIWNLVFMQYEQVNKEERIELPCPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF LI+AS+++TG++ G I +HRVI DHLRSS+FLI+DG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFCKLIRASQEITGVEATGEFIASHRVIADHLRSSAFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG E LM HLLP L EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHFLGAKESLMGHLLPVLIREMGQAYPELVRAESLISEILKLEETRFH 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ + L + + +G+VAFKLYDT+G P+D+ QD+L RG++ +DI +F Sbjct: 361 KTLERGLSLLNEASTDLKEGDHFDGEVAFKLYDTYGFPIDLTQDVLRRRGIS-VDIDAFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q++ RA+ G G+ TE +WFS++++ G T+F+GY+ Sbjct: 420 KAMELQKAENRANWSGSGASMTETVWFSIRDQVGTTEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ A+V G+IV+ SGQ +V +QTPFYAE+GGQ+GD+G + Sbjct: 462 -----TEKAEGVITALVCDGKIVDHVFSGQDAMLVVNQTPFYAESGGQIGDSGVICSESF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D Q++ EG+F+H V+ G + + L ID RR++ NHSATHLLH AL Sbjct: 517 VFEVHDTQRRGEGVFIHIGKVKSGQAKISDCVELIIDSGRRRKIRANHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG HV+Q GS ++PD LRFD +H K I+S ELK +ED NDI+ +N V T +M +DA Sbjct: 577 ILGPHVAQKGSLVSPDRLRFDFSHPKSISSEELKRVEDLANDIVLRNSKVTTHLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I GA AL G KY D VRVVS+ E S LCGGTHV TG+I L++IV+ES Sbjct: 637 IFEGAMALFGEKYGDEVRVVSMGERCEPTELKKRWSIELCGGTHVQRTGDIGLIHIVAES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 SI +G+RRIEA+TG AR +L QD+++ +ASFLK S NV RV ++++ RKL +L Sbjct: 697 SIASGVRRIEALTGTTARLYLSKQDKRIYEIASFLKASPANVEERVRNLFDDRRKLEKEL 756 Query: 773 IHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ + LN L K I ++FM ++ + ++LK+++D+ +K+I+SG++ Sbjct: 757 NDTRKSVVLNGRALQGRKENITIINGISFMGGVLRNIAVRDLKTLVDSGKKQIESGVVAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + +S++ K S ++ VT+DL + NAVDL R+ + VLGG GGGGRP MAQ+GG G+KAD+ Sbjct: 817 ISVSEDGKGSAVVGVTDDLTNMLNAVDLVRVISVVLGGQGGGGRPDMAQAGGSKGDKADE 876 Query: 888 AIAGVASFLK 897 AI + +FLK Sbjct: 877 AITALKAFLK 886 >gi|307945634|ref|ZP_07660970.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4] gi|307771507|gb|EFO30732.1| alanyl-tRNA synthetase [Roseibium sp. TrichSKD4] Length = 888 Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/910 (52%), Positives = 632/910 (69%), Gaps = 38/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+TFL++F KN HE++ S L+P NDPTLMF N+GM FKNIFTG EK Sbjct: 1 MTGVNDIRSTFLDYFSKNSHEVVESGPLVPRNDPTLMFANAGMNQFKNIFTGLEKRECSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L Sbjct: 61 AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TV+ ED+EA LWKKI+GLS DKIIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PADRLLVTVFAEDDEAAVLWKKIAGLSDDKIIRIATSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQ +R LP+ SIDTGMG+ER+AT+LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQL-ADKRVDLPRPSIDTGMGIERLATILQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLFK LI ASE TG++ G+ + +HRVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 240 VHNNYDIDLFKALISASEHETGVEASGDALSSHRVIADHLRSTSFLIADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRR M +A LLG +PLM L+P+L EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 300 VLRRIMRRGMRHAHLLGARDPLMHKLVPSLIREMGRAYPELGRAEALISETLKLEETRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD L + L+G+ AFKLYDT+G PLD+ QD L RG++ +D F+ Sbjct: 360 KTLERGLGLLDTASGDLFEGGQLDGETAFKLYDTYGFPLDLTQDALRTRGIS-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G G TE IWF+LK+K GAT F+GY+ Sbjct: 419 SAMERQKAEARAAWSGSGGAVTETIWFALKDKVGATDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +VK +V V++ SGQ+ VV +QTPFY E+GGQ+GD G IG+G+ Sbjct: 461 -----TETAEGVVKGLVADDAQVDKLNSGQEGFVVLNQTPFYGESGGQVGDAGLMIGEGV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R+ ++DVQKKA+G+FVH VE G L + L L +D+ R + NHSATHL+H AL Sbjct: 516 RVTVSDVQKKADGLFVHAVKVEDGTLTLDQPLELKVDHARRTAIRSNHSATHLVHEALRE 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS ++P+ LRFD +H KP++ EL E N+I+ QN PV TR+M +DA Sbjct: 576 VLGTHVAQKGSMVSPERLRFDFSHPKPLSDEELAVTEKFANEIVLQNAPVETRLMAVDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I +GA AL G KY D VRVVS+ ++G +S LCGGTHV TG+I L+ +VSE+ Sbjct: 636 IEAGAMALFGEKYGDEVRVVSMGTALHGEKEGKPYSLELCGGTHVKRTGDIGLVTLVSEA 695 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RR+EA+TG AR++L QD+++K +A+ LK +V RV ++ E+ RKL +L Sbjct: 696 AVAAGVRRVEALTGSEARAYLDAQDKRVKEVAAILKSGMADVPARVAQLVEDRRKLEKEL 755 Query: 773 IHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 AK+KL + I V M ++ +++K+LK ++D + +I SG+++L Sbjct: 756 QEAKKKLAMGGGAGGDAGGAVKTIGSVQLMGRVVEGINAKDLKGMVDEAKTQIGSGVVVL 815 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + KAS++ VT+DL+++ +AVDL RL ++ LGG GGGGRP MAQ+GGP+G+KA+ Sbjct: 816 ISTGEGGKASIVTGVTKDLVEKVSAVDLVRLGSEALGGRGGGGRPDMAQAGGPDGSKAED 875 Query: 888 AIAGVASFLK 897 AI + L+ Sbjct: 876 AIKAIEGHLE 885 >gi|205830265|sp|Q11IW3|SYA_MESSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 887 Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/894 (52%), Positives = 625/894 (69%), Gaps = 37/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL+FF+KNGHE++ S L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MSGVNDIRSAFLDFFKKNGHEVVASGPLVPRNDPTLMFTNAGMVQFKNVFTGMETRPYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIELAWNLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 D +RL +TVY D+EA W+KI+GL ++IIRI T+DNFW+M +TGPCGPCSEIFFD Sbjct: 121 DPKRLLVTVYHTDDEAAGHWRKIAGLPEERIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQ+EQ + ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 EGIPGGPPGSPDEDGDRFIEIWNLVFMQYEQVSPDERINLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLFK LI A+E+ G++ EG +++VI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VHDNYEIDLFKALIHATEEAVGVRAEGERRPSYKVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+PAL EMG AYPEL++ + LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAEEPLMWRLVPALVREMGQAYPELVRGEALITETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LL +G+ + L+G+ AFKLYDT+G PLD+ QD L RG+ +D+ FN Sbjct: 361 KTLARGLNLLSDATGGMGEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGVT-VDLEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G G TE +WFS+K++ GAT F+GY+ Sbjct: 420 AAMERQKAEARASWAGSGEAATEAVWFSVKDRTGATDFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+V+ G +VE A G++V VV +QTPFY E+GGQ+GDTG G+G Sbjct: 462 -----TEEAEGIIAALVKDGAMVETAAEGEEVAVVTNQTPFYGESGGQVGDTGTIEGEGF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I + QKK EG+FVH V++G +R + L +D++ R ++ NHSATHLLH AL Sbjct: 517 AIEIKNTQKKGEGLFVHFGQVKKGTVRISEPVSLRVDHERRTRIRANHSATHLLHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + PD LRFD +H KPI EL+ IED N+++ QN PVVTR+M +DA Sbjct: 577 VLGTHVAQKGSLVAPDRLRFDFSHPKPIAEEELQQIEDLANEVVLQNAPVVTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV++TG+I L++I+ E Sbjct: 637 IAEGAMALFGEKYGDEVRVVSMGKGTQGEKSGKTYSLELCGGTHVNATGDIGLVHIIGEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RR+EA+TG AR +L Q+ +LK+ AS LKVS G+++ R+E + EE RKL +L Sbjct: 697 AVAAGVRRVEALTGAAARRYLDEQERRLKAAASVLKVSPGDLLPRLETLVEERRKLEREL 756 Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A++KL L + ++ V F+ ++ + K+LK + D +K + SG+++ Sbjct: 757 SEARKKLALGGGAGAKAGEEREEVGGVGFIGRVVEGISPKDLKPLADEGKKSLGSGVVVF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 VG S+E KASV++ VT+DL RF+AVDL R ++ +GG GGGGRP MAQ+GGP+ Sbjct: 817 VGTSEEGKASVVVGVTDDLTGRFSAVDLVRKASAAIGGQGGGGRPDMAQAGGPD 870 >gi|298292138|ref|YP_003694077.1| alanyl-tRNA synthetase [Starkeya novella DSM 506] gi|296928649|gb|ADH89458.1| alanyl-tRNA synthetase [Starkeya novella DSM 506] Length = 883 Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/905 (51%), Positives = 625/905 (69%), Gaps = 33/905 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR TFL++F KNGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRATFLDYFAKNGHQVVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGIEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+T+EF+L Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIEFAWNLITREFEL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY ED+EAF LWK+I+GL KI+RI T+DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PVEKLMVTVYHEDDEAFSLWKRIAGLPDSKIVRIATSDNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS + +G+R+IEIWNLVFMQFEQ ER LP+ SIDTGMGLER++ VLQ Sbjct: 181 DHIPGGPPGSPDADGDRFIEIWNLVFMQFEQLPGGERLNLPRPSIDTGMGLERISAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDL + L A E++T + +G +HRVI DHLR+S+FL+ADG+LP+NEGRGY Sbjct: 241 THDNYEIDLMRALTGAVEEMTDVPADGPQKASHRVIADHLRASTFLVADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +PLM L+P L EMG A+PE+++A+ L+ ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGARDPLMHRLVPILVREMGRAFPEIVRAEPLVTETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +L+ LG +G+ AFKLYDT+G PLD+ +D L ARG+ +D+ SFN Sbjct: 361 KTLERGLSILETESEGLGAGAKFSGETAFKLYDTYGFPLDLTEDALRARGV-NVDVDSFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ ARA G G T+ +WF+++E+ G T+F+GY Sbjct: 420 AAMERQRAEARASWAGSGEAATDTVWFAVREEVGPTEFLGYG------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538 T V A+V +G+ VE +G + VV +QTPFY E+GGQ+GDTG G+ G Sbjct: 462 -----TETAEGTVTALVTEGKRVETLPAGARGLVVLNQTPFYGESGGQVGDTGTMSGEGG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++L++T QKK IF H VE G L L L +D + R+ + NHSATHLLH AL Sbjct: 517 LKLRVTGTQKKLGDIFAHEVEVEEGTLTIGAPLALFVDGERRQAIRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + PD LRFD +H KP+ +AELK++ED N I+ +N PVVTR+M +D Sbjct: 577 RVLGDHVAQKGSLVAPDRLRFDFSHPKPVEAAELKAVEDIANRIVLRNEPVVTRLMAVDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE--DGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 AI SGA AL G KY D VRVVS+ + +G +S LCGGTHV+ TG+I L+ ++ ES++ Sbjct: 637 AIESGARALFGEKYGDEVRVVSMGTDPGNGAPYSVELCGGTHVARTGDIGLVSVLGESAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RRIEA+TG AR HL Q L+ A L+ G V R+ ++ EE RKL +L Sbjct: 697 GAGVRRIEAMTGDAARHHLNAQSRALQGAADVLRAPVGEVEARIAQLVEERRKLERELGD 756 Query: 775 AKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 AKRKL + + + V ++ +S +D K+LKS+ D +K+I SGI+ +VG++ Sbjct: 757 AKRKLAMGGGAASEEPARTVGAVKLLARQVSGIDLKDLKSLADEGKKRIGSGIVAIVGVT 816 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 +E +A +++ VT+DL +++AV L R A+ LGG GGGGRP MAQ+GGP+G +A +A+A Sbjct: 817 EEGRAGLVVGVTDDLTGKYDAVALVRRGAEALGGKGGGGRPDMAQAGGPDGGRAAEALAA 876 Query: 892 VASFL 896 + + L Sbjct: 877 IENAL 881 >gi|110633619|ref|YP_673827.1| alanyl-tRNA synthetase [Mesorhizobium sp. BNC1] gi|110284603|gb|ABG62662.1| alanyl-tRNA synthetase [Chelativorans sp. BNC1] Length = 909 Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/894 (52%), Positives = 625/894 (69%), Gaps = 37/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL+FF+KNGHE++ S L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 23 MSGVNDIRSAFLDFFKKNGHEVVASGPLVPRNDPTLMFTNAGMVQFKNVFTGMETRPYNR 82 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L Sbjct: 83 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIELAWNLVTKEFGL 142 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 D +RL +TVY D+EA W+KI+GL ++IIRI T+DNFW+M +TGPCGPCSEIFFD Sbjct: 143 DPKRLLVTVYHTDDEAAGHWRKIAGLPEERIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 202 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQ+EQ + ER LP+ SIDTGMGLER+A VLQ Sbjct: 203 EGIPGGPPGSPDEDGDRFIEIWNLVFMQYEQVSPDERINLPRPSIDTGMGLERVAAVLQG 262 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLFK LI A+E+ G++ EG +++VI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 263 VHDNYEIDLFKALIHATEEAVGVRAEGERRPSYKVIADHLRASSFLIADGVLPSNEGRGY 322 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+PAL EMG AYPEL++ + LI ETL+ E+ RF Sbjct: 323 VLRRIMRRAMRHAQLLGAEEPLMWRLVPALVREMGQAYPELVRGEALITETLKLEETRFR 382 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LL +G+ + L+G+ AFKLYDT+G PLD+ QD L RG+ +D+ FN Sbjct: 383 KTLARGLNLLSDATGGMGEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGVT-VDLEGFN 441 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G G TE +WFS+K++ GAT F+GY+ Sbjct: 442 AAMERQKAEARASWAGSGEAATEAVWFSVKDRTGATDFLGYE------------------ 483 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+V+ G +VE A G++V VV +QTPFY E+GGQ+GDTG G+G Sbjct: 484 -----TEEAEGIIAALVKDGAMVETAAEGEEVAVVTNQTPFYGESGGQVGDTGTIEGEGF 538 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I + QKK EG+FVH V++G +R + L +D++ R ++ NHSATHLLH AL Sbjct: 539 AIEIKNTQKKGEGLFVHFGQVKKGTVRISEPVSLRVDHERRTRIRANHSATHLLHEALRE 598 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + PD LRFD +H KPI EL+ IED N+++ QN PVVTR+M +DA Sbjct: 599 VLGTHVAQKGSLVAPDRLRFDFSHPKPIAEEELQQIEDLANEVVLQNAPVVTRLMAVDDA 658 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRVVS+ + G +S LCGGTHV++TG+I L++I+ E Sbjct: 659 IAEGAMALFGEKYGDEVRVVSMGKGTQGEKSGKTYSLELCGGTHVNATGDIGLVHIIGEG 718 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RR+EA+TG AR +L Q+ +LK+ AS LKVS G+++ R+E + EE RKL +L Sbjct: 719 AVAAGVRRVEALTGAAARRYLDEQERRLKAAASVLKVSPGDLLPRLETLVEERRKLEREL 778 Query: 773 IHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A++KL L + ++ V F+ ++ + K+LK + D +K + SG+++ Sbjct: 779 SEARKKLALGGGAGAKAGEEREEVGGVGFIGRVVEGISPKDLKPLADEGKKSLGSGVVVF 838 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 VG S+E KASV++ VT+DL RF+AVDL R ++ +GG GGGGRP MAQ+GGP+ Sbjct: 839 VGTSEEGKASVVVGVTDDLTGRFSAVDLVRKASAAIGGQGGGGRPDMAQAGGPD 892 >gi|328543180|ref|YP_004303289.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase, DHHA1:Alanyl-transfer RNA synthetase [Polymorphum gilvum SL003B-26A1] gi|326412926|gb|ADZ69989.1| Alanyl-tRNA synthetase, class IIc:Phosphoesterase, DHHA1:Alanyl-transfer RNA synthetase [Polymorphum gilvum SL003B-26A1] Length = 887 Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/895 (52%), Positives = 616/895 (68%), Gaps = 38/895 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F KNGH+++ S L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSAFLDYFAKNGHQVVESGPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRDYAR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW L+TKEF L Sbjct: 61 AATSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ ED+EA LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 AKDRLLVTVFAEDDEAHGLWKKIAGFSDDRIIRIPTSDNFWTMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS+EE G+R+IEIWNLVFMQ+E Q Q R LP+ SIDTGMGLER+A VLQ Sbjct: 181 EHIWGGPPGSAEEDGDRFIEIWNLVFMQYE-QTPQARLPLPRPSIDTGMGLERIAAVLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI AS TG++ +G+ +HRVI DHLRSS FLIADG+LP+NEGRGY Sbjct: 240 VHDNYDIDLFRALISASVNATGVEADGSARASHRVIADHLRSSCFLIADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRR M +A LLG EPLM L+PAL EMG AYPEL++A+ LI ETLR E+ RF Sbjct: 300 VLRRIMRRGMRHAHLLGAQEPLMWRLVPALIREMGRAYPELVRAEALITETLRLEEGRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD L + L+G+ AF+LYDT+G PLD+ QD L ARG+ G+D F Sbjct: 360 KTLERGLGLLDAATVDLSEGGELDGETAFRLYDTYGFPLDLTQDALRARGI-GVDTAGFA 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G G T+ +WF LKEK GAT+F+GY+ R Sbjct: 419 AAMERQKAEARAAWAGSGEAATDAVWFGLKEKCGATEFLGYEAER--------------- 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V A+V G V E +GQ VF+QTPFY E+GGQ+GDTG G+ Sbjct: 464 --------AEGAVAALVADGREVSELATGQSGFAVFNQTPFYGESGGQVGDTGSLHALGV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++TD QKKA+G+FVH VE G L ++L + +D R + NHSATHLLH AL Sbjct: 516 KARVTDTQKKADGLFVHAVTVEEGTLSVGLALDMIVDPDRRTAIRSNHSATHLLHEALRE 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS ++P+ LRFD +H KP++ ELK +ED N+I+ QN V TR+M ++A Sbjct: 576 VLGGHVAQKGSLVSPERLRFDFSHPKPMSEDELKVVEDYANEIVLQNAAVETRLMAVDEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I SGA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ +V+E Sbjct: 636 IESGAMALFGEKYGDEVRVVSMGTALHGDKAGKAYSVELCGGTHVRRTGDIGLVRLVTEG 695 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RRIEA+TG AR++L QD +++ LA LKV +V RV ++ E+ R+L +L Sbjct: 696 AVAAGVRRIEALTGPVARAYLDEQDARVRELAGLLKVGAADVTARVAQLVEDRRRLEREL 755 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 AK+KL + + + M+ I+ ++ K+LK + D ++ SG+++L Sbjct: 756 AEAKKKLAMGGGGGEAGAAVVKMVGSLRLMARIVEGINPKDLKGLADETMAQVGSGVVVL 815 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + ++++ KA+++ V++DL DR +AVDL RL ++ LGG GGGGRP MAQ+GGP+G Sbjct: 816 ISVAEDGKAAIVTAVSKDLTDRVSAVDLVRLGSEALGGRGGGGRPDMAQAGGPDG 870 >gi|2500957|sp|P70865|SYA_BARBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|1568622|gb|AAB09037.1| AlaS [Bartonella bacilliformis] Length = 886 Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/909 (52%), Positives = 637/909 (70%), Gaps = 36/909 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V++IR+TFL++F +NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MNSVNNIRSTFLDYFHRNGHEVLSSSPLVPRNDPTLMFTNAGMVDFKNVFTGLEKHSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSNYFKEEAIFYAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY +D+ A LW+KISGLS +KIIRI TNDNFW M +TGPCGPCSEIF+D G Sbjct: 121 SKDKLLVTVYHDDDVAAGLWRKISGLSEEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ +K++R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DKIWGGPPGSADEDGDRFIEIWNLVFMQYEQLSKEKRIELPQPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI AS+++ G+K G+ +HRVI DHLRSS+FLIADGI+P+NEGRGY Sbjct: 241 VHDNYDIDLFRTLIHASQEIIGVKATGDFFASHRVIADHLRSSAFLIADGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG + LM L+P L +EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGSKDLLMWRLVPVLISEMGQAYPELVRAESLISEILKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ +HL + + NG+VAFKLYDT+G PLD+ QD L RG++ +D+ +F+ Sbjct: 361 KTLERGLGLLNEASTHLEEGDYFNGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDVDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A++ Q++ ARA+ G G TE +WFS++++ GAT+F+GY+ Sbjct: 420 KAMKRQKAEARANWSGSGDCVTETVWFSIRDQVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+++ GE+V+ GQK +V +QTPFY E+GGQ+GD+G G Sbjct: 462 -----TEKAEGIITALIRDGEVVDHIDLGQKAMIVVNQTPFYGESGGQVGDSGIISGANF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKK + +F+H ++ G + + L +D RR++ NHSATHLLH +L Sbjct: 517 IFEVHDTQKKGDNVFIHIGEIKTGQAKKHDCVELIVDSARRRKIRANHSATHLLHESLRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LGSHV Q GS ++PD LRFD +H K I+S ELK IED NDI+ QN V TR+M +DA Sbjct: 577 TLGSHVVQKGSFVSPDRLRFDFSHPKSISSEELKKIEDLANDIVLQNSKVTTRLMAIDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRV+S+ E G S LCGGTHV TG+I L++I+SE+ Sbjct: 637 IAEGAMALFGEKYGDEVRVISMGNNLEQTGSKKWWSIELCGGTHVQRTGDIGLIHIISET 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 S+ AG+RRIEA+T AR +L GQD ++ +A LK S +V RV+ + +E RKL +L Sbjct: 697 SVAAGVRRIEALTATAARLYLHGQDRRVYEIAGLLKTSPADVQERVQTLLDERRKLEKEL 756 Query: 773 IHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 +++K+ LN ++ I ++FM ++S + K+LK+++D+ +KKI SG++ + Sbjct: 757 NDSRKKIALNGGSVNSQGDIQTINGISFMGGVVSNILPKDLKALVDSGKKKIGSGVVAFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S++ K S ++ VT+DL D NAVDL R+ + LGG GGGGR MAQ+GG G KAD+A Sbjct: 817 SVSEDGKGSAVVGVTDDLTDTLNAVDLVRIISVTLGGQGGGGRRDMAQAGGSEGGKADEA 876 Query: 889 IAGVASFLK 897 + + LK Sbjct: 877 LVALKDSLK 885 >gi|121601991|ref|YP_989027.1| alanyl-tRNA synthetase [Bartonella bacilliformis KC583] gi|205829988|sp|A1USS4|SYA_BARBK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120614168|gb|ABM44769.1| alanyl-tRNA synthetase [Bartonella bacilliformis KC583] Length = 886 Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/909 (52%), Positives = 637/909 (70%), Gaps = 36/909 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V++IR+TFL++F +NGHE+L SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MNSVNNIRSTFLDYFHRNGHEVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKHSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSNYFKEEAIFYAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY +D+ A LW+KISGLS +KIIRI TNDNFW M +TGPCGPCSEIF+D G Sbjct: 121 SKDKLLVTVYHDDDVAAGLWRKISGLSEEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R+IEIWNLVFMQ+EQ +K++R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DKIWGGPPGSADEDGDRFIEIWNLVFMQYEQLSKEKRIELPQPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI AS+++ G+K G+ +HRVI DHLRSS+FLIADGI+P+NEGRGY Sbjct: 241 VHDNYDIDLFRTLIHASQEIIGVKATGDFFASHRVIADHLRSSAFLIADGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG + LM L+P L +EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGSKDLLMWRLVPVLISEMGQAYPELVRAESLISEILKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ +HL + + NG+VAFKLYDT+G PLD+ QD L RG++ +D+ +F+ Sbjct: 361 KTLERGLGLLNEASTHLEEGDYFNGEVAFKLYDTYGFPLDLTQDALRRRGIS-VDVDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A++ Q++ ARA+ G G TE +WFS++++ GAT+F+GY+ Sbjct: 420 KAMKRQKAEARANWSGSGDCVTETVWFSIRDQVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T I+ A+++ GE+V+ GQK +V +QTPFY E+GGQ+GD+G G Sbjct: 462 -----TEKAEGIITALIRDGEVVDHIDLGQKAMIVVNQTPFYGESGGQVGDSGIISGANF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKK + +F+H ++ G + + L +D RR++ NHSATHLLH +L Sbjct: 517 IFEVHDTQKKGDNVFIHIGEIKTGQAKKHDCVELIVDSARRRKIRANHSATHLLHESLRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LGSHV Q GS ++PD LRFD +H K I+S ELK IED NDI+ QN V TR+M +DA Sbjct: 577 TLGSHVVQKGSFVSPDRLRFDFSHPKSISSEELKKIEDLANDIVLQNSKVTTRLMAIDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSES 714 IA GA AL G KY D VRV+S+ E G S LCGGTHV TG+I L++I+SE+ Sbjct: 637 IAEGAMALFGEKYGDEVRVISMGNNLEQTGSKKWWSIELCGGTHVQRTGDIGLIHIISET 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 S+ AG+RRIEA+T AR +L GQD ++ +A LK S +V RV+ + +E RKL +L Sbjct: 697 SVAAGVRRIEALTATAARLYLHGQDRRVYEIAGLLKTSPADVQERVQTLLDERRKLEKEL 756 Query: 773 IHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 +++K+ LN ++ I ++FM ++S + K+LK+++D+ +KKI SG++ + Sbjct: 757 NDSRKKIALNGGSVNSQGDIQTINGISFMGGVVSNILPKDLKALVDSGKKKIGSGVVAFI 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S++ K S ++ VT+DL D NAVDL R+ + LGG GGGGR MAQ+GG G KAD+A Sbjct: 817 SVSEDGKGSAVVGVTDDLTDTLNAVDLVRIISVTLGGQGGGGRRDMAQAGGSEGGKADEA 876 Query: 889 IAGVASFLK 897 + + LK Sbjct: 877 LVALKDSLK 885 >gi|148256734|ref|YP_001241319.1| alanyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] gi|205829994|sp|A5EML9|SYA_BRASB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146408907|gb|ABQ37413.1| alanyl-tRNA synthetase [Bradyrhizobium sp. BTAi1] Length = 896 Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/918 (51%), Positives = 625/918 (68%), Gaps = 44/918 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL FF NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLNFFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWKLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY +D+EAF LWKKI+GL +IIRI +DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLTATVYIDDDEAFGLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + GG PGS E +G+R+IEIWNLVFMQ+EQ R LPK SIDTG GLER+A VLQ Sbjct: 181 DKVWGGPPGSPEADGDRFIEIWNLVFMQYEQLEGGVRNPLPKPSIDTGAGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A +T +G + RVI DHLR+SSFLI+DG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAIADLTNADPQGPQKASLRVIADHLRASSFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL EMG AYPELI+A+ LI+ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMHKLVGALTREMGQAYPELIRAEALIKETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD S L K ++ +GDVAF LYDT+G PLD+ QD L +RG++ +D SF Sbjct: 361 KTLERGLAILDEKSSTLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGIS-VDQASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR++ARA G G TE +WF L+EK GAT+F+GY+ Sbjct: 420 DAMERQRAKARAAWAGSGEAATENVWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G VE +G+ +V +QTPFY E+GGQ+GDTG GDG+ Sbjct: 462 -----TETAEGAVTALVKDGAEVEGLKAGESGAIVLNQTPFYGESGGQVGDTGVMSGDGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R++ITD QKKA +FVH VE+G L+ +L L +D+ R + NHSATH+LH AL Sbjct: 517 RVRITDTQKKAGDLFVHIGTVEQGTLKLGAALQLEVDHGRRSAIRANHSATHILHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS ++PD LRFD H KPI++ EL +ED ND++ +N V TR+M +DA Sbjct: 577 VLGDHIAQRGSLVSPDRLRFDFAHPKPISAEELARVEDIANDVVLENAEVTTRLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSA---------LCGGTHVSSTGEIMLL 708 +GA AL G KY D VRVVS+ D ++ A LCGGTHV TG+I L+ Sbjct: 637 REAGARALFGEKYGDEVRVVSMGNAARDQASNAQASNAMGWSVELCGGTHVKRTGDIGLI 696 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 + SES++ +G+RRIEA+T + AR+H K+ A+ L+ + V R+ + EE + Sbjct: 697 AVTSESAVSSGVRRIEALTARGARAHANHNLSLAKAAAAELRTTVDEVPARIAALMEERK 756 Query: 769 KL--QLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 KL +L A++KL + ++A V M+ + V+ K+LKS++D +K++ Sbjct: 757 KLERELSDARKKLAMGGGAAAGGSASGIREVAGVKLMARAVEGVEMKDLKSLVDEAKKQL 816 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 SG++ +VG +++ KA V++ VT DL RFNAV+L R +++ LGG GGGGRP MAQ+GGP Sbjct: 817 GSGVVAIVGRAEDGKAGVVVGVTADLTARFNAVELVRAASEALGGKGGGGRPDMAQAGGP 876 Query: 881 NGNKADQAIAGVASFLKK 898 +G+KA+ A+A + S + + Sbjct: 877 DGSKAEAALAAIESAISR 894 >gi|90423082|ref|YP_531452.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB18] gi|122476792|sp|Q218Q3|SYA_RHOPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|90105096|gb|ABD87133.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB18] Length = 890 Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/909 (51%), Positives = 630/909 (69%), Gaps = 40/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Sbjct: 1 MSGVNEIRSAFLNYFGKDGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKEF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ ED+EAF LWKKI+GL KIIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 121 PKERLLVTVFSEDDEAFALWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS EE G+R+IEIWNLVFMQF+Q +R LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIPGGPPGSPEEDGDRFIEIWNLVFMQFDQIAPGQRNPLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF+ LI+A ++TG +G + + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFQALIRAIAELTGADPKGEHKASLRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +LLG TEPLM L+ AL EMG AYPEL++A+ +IEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHGQLLGATEPLMWRLVWALVREMGQAYPELVRAEPMIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL++LD S L K ++ +G+ AF LYDT+G PLD+ QD L RG++ +DI SF Sbjct: 361 KTLDRGLIILDEKSSTLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGIS-VDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WF L+E+ GAT+F+GY+ Sbjct: 420 DAMDRQRAKARASWAGSGDTATETVWFGLREQLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G+ V++ G+ +V +QTPFYAE+GGQ+GDTG G+G+ Sbjct: 462 -----TETAEGVVAALVKDGQKVDQLKVGEAGAIVLNQTPFYAESGGQVGDTGVMTGEGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++T+ QKKA +FVH VE+G L + +L+L +D+ R + NHSATHLLH AL Sbjct: 517 RFRVTETQKKAHDLFVHLGTVEQGTLTPDTALLLEVDHTRRSSIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + D LRFD H KPI++ EL+ +ED N+++ +N V TR+M +DA Sbjct: 577 VLGDHIAQKGSLVAEDRLRFDFVHQKPISADELRRVEDIANEVVLENDEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVV++ S+A LCGGTHV TG+I L+ I E Sbjct: 637 REAGARALFGEKYGDEVRVVTMGKSARQHGSNALGWSVELCGGTHVRRTGDIGLISITGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S++ +G+RRIEA+TG+ AR + K+ A+ L+ S ++ RV + +E +KL + Sbjct: 697 SAVASGVRRIEALTGRFARQSANAAIDTAKATAAELRTSVDDMPARVAALMDERKKLERE 756 Query: 772 LIHAKRKL-------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L A++KL + ++ V ++ + ++ K+LKS++D +K++ SG+ Sbjct: 757 LAEARKKLAMGGGGAAAANGEAGVREVGGVKLLARAVEGIEIKDLKSLVDQGKKQLGSGV 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I LV S + K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K Sbjct: 817 IALVATSADGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 876 Query: 885 ADQAIAGVA 893 A A+ +A Sbjct: 877 AQAALDAIA 885 >gi|205830051|sp|B2IHX3|SYA_BEII9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 898 Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/911 (52%), Positives = 622/911 (68%), Gaps = 43/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR FL+FF+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MNGVNEIRAAFLDFFRKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNLFTGVEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+T+ FDL Sbjct: 61 ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITEVFDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY +D+EA+ LWKKI+G KIIRI T+DNFW+M +TGPCGPCSEIF+DQG Sbjct: 121 PKDRLLVTVYHDDDEAYDLWKKIAGFPDSKIIRIATSDNFWAMGDTGPCGPCSEIFYDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS+ E+G+R++E WNLVFMQFEQ+ +R LPK SIDTGMGLER+A +LQ Sbjct: 181 EKLFGGPPGSADEDGDRFLEFWNLVFMQFEQRGPGDRIALPKPSIDTGMGLERIAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 T+NYDIDL + LI A Q TG+ +G +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 VTSNYDIDLMRALILAVAQATGVDPDGPMRASHRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ L+PAL EMG AYPEL++A+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAQEPLLWRLVPALTREMGQAYPELLRAEALIVETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RGL +L+ HL + +L+G+VAFKLYDT+G PLD+ QD L A+ L G+D+ F Sbjct: 361 ATLARGLTILEDETRHLSEGGVLSGEVAFKLYDTYGFPLDLTQDALRAKSL-GVDMEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ QR+ AR G G T+ WF+L+E+ GAT F+GYD Sbjct: 420 KAMARQRAEARKAWSGSGEAATDTHWFALREQLGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++++AI+Q G+ V +GQ +V +QTPFY E+GGQ+GDTG I G+ Sbjct: 462 -----TEKAEALIQAILQDGKEVLRLEAGQSGAIVLNQTPFYGESGGQVGDTGLIIAPGM 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++ + KK +F+H IVE G + + + +D+ R + NHSATHLLH AL Sbjct: 517 RFKVENTHKKLGDLFIHEGIVEEGAVVPGLEVRTLVDHSRRTAVRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD +H KP+T E IED N +I +N PV T++M+ EDA Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFSHPKPVTPEEWTQIEDIANSVILENAPVTTKLMSIEDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE--------DGGV---HSSALCGGTHVSSTGEIMLL 708 + SGA AL G KY D VRVVS+ Y+ DG + S LCGGTHV+ TG+I LL Sbjct: 637 MGSGARALFGEKYGDEVRVVSMGYDEDKADDSTDGRIAPPFSVELCGGTHVARTGDIGLL 696 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I+SES++ AG+RRIEA TG AR HL Q L SLA+ LK + R+ + EE R Sbjct: 697 TIISESAVAAGVRRIEAKTGSSARHHLNTQASLLHSLAAQLKSPEDEASKRLSALIEERR 756 Query: 769 KL--QLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 KL +L A++KL + N D +I + F ++ V+ K+LKS+ D ++ I Sbjct: 757 KLDRELSEARKKLAMGGGSSNGADSPLREIGGIKFFRRAVTGVEMKDLKSLADEAKQTIG 816 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 SGI+ +VG+ + KASV++ VT+DL+DRF+AV L RL+A LGG GGGGR +AQ+GGP+ Sbjct: 817 SGIVAIVGVGSDNKASVVVGVTDDLIDRFDAVALVRLAAGKLGGKGGGGRKDLAQAGGPD 876 Query: 882 GNKADQAIAGV 892 G A+ A+ + Sbjct: 877 GEAAEAALTAI 887 >gi|182679359|ref|YP_001833505.1| alanyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC 9039] gi|182635242|gb|ACB96016.1| alanyl-tRNA synthetase [Beijerinckia indica subsp. indica ATCC 9039] Length = 901 Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/911 (52%), Positives = 622/911 (68%), Gaps = 43/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR FL+FF+KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 4 MNGVNEIRAAFLDFFRKNGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNLFTGVEKRPYTR 63 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+T+ FDL Sbjct: 64 ASTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITEVFDL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY +D+EA+ LWKKI+G KIIRI T+DNFW+M +TGPCGPCSEIF+DQG Sbjct: 124 PKDRLLVTVYHDDDEAYDLWKKIAGFPDSKIIRIATSDNFWAMGDTGPCGPCSEIFYDQG 183 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS+ E+G+R++E WNLVFMQFEQ+ +R LPK SIDTGMGLER+A +LQ Sbjct: 184 EKLFGGPPGSADEDGDRFLEFWNLVFMQFEQRGPGDRIALPKPSIDTGMGLERIAALLQG 243 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 T+NYDIDL + LI A Q TG+ +G +HRVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 244 VTSNYDIDLMRALILAVAQATGVDPDGPMRASHRVIADHLRASSFLIADGVLPSNEGRGY 303 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPL+ L+PAL EMG AYPEL++A+ LI ETLR E+ RF Sbjct: 304 VLRRIMRRAMRHAQLLGAQEPLLWRLVPALTREMGQAYPELLRAEALIVETLRLEETRFR 363 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RGL +L+ HL + +L+G+VAFKLYDT+G PLD+ QD L A+ L G+D+ F Sbjct: 364 ATLARGLTILEDETRHLSEGGVLSGEVAFKLYDTYGFPLDLTQDALRAKSL-GVDMEGFE 422 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ QR+ AR G G T+ WF+L+E+ GAT F+GYD Sbjct: 423 KAMARQRAEARKAWSGSGEAATDTHWFALREQLGATDFLGYD------------------ 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++++AI+Q G+ V +GQ +V +QTPFY E+GGQ+GDTG I G+ Sbjct: 465 -----TEKAEALIQAILQDGKEVLRLEAGQSGAIVLNQTPFYGESGGQVGDTGLIIAPGM 519 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++ + KK +F+H IVE G + + + +D+ R + NHSATHLLH AL Sbjct: 520 RFKVENTHKKLGDLFIHEGIVEEGAVVPGLEVRTLVDHSRRTAVRANHSATHLLHEALRQ 579 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD +H KP+T E IED N +I +N PV T++M+ EDA Sbjct: 580 VLGDHIAQKGSLVAPDRLRFDFSHPKPVTPEEWTQIEDIANSVILENAPVTTKLMSIEDA 639 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE--------DGGV---HSSALCGGTHVSSTGEIMLL 708 + SGA AL G KY D VRVVS+ Y+ DG + S LCGGTHV+ TG+I LL Sbjct: 640 MGSGARALFGEKYGDEVRVVSMGYDEDKADDSTDGRIAPPFSVELCGGTHVARTGDIGLL 699 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I+SES++ AG+RRIEA TG AR HL Q L SLA+ LK + R+ + EE R Sbjct: 700 TIISESAVAAGVRRIEAKTGSSARHHLNTQASLLHSLAAQLKSPEDEASKRLSALIEERR 759 Query: 769 KL--QLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 KL +L A++KL + N D +I + F ++ V+ K+LKS+ D ++ I Sbjct: 760 KLDRELSEARKKLAMGGGSSNGADSPLREIGGIKFFRRAVTGVEMKDLKSLADEAKQTIG 819 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 SGI+ +VG+ + KASV++ VT+DL+DRF+AV L RL+A LGG GGGGR +AQ+GGP+ Sbjct: 820 SGIVAIVGVGSDNKASVVVGVTDDLIDRFDAVALVRLAAGKLGGKGGGGRKDLAQAGGPD 879 Query: 882 GNKADQAIAGV 892 G A+ A+ + Sbjct: 880 GEAAEAALTAI 890 >gi|319408736|emb|CBI82393.1| Alanyl-tRNA synthetase [Bartonella schoenbuchensis R1] Length = 889 Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/911 (52%), Positives = 637/911 (69%), Gaps = 38/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+ IR+TFL++F +NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+ Sbjct: 1 MNSVNKIRSTFLDYFHRNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQLSCSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSF YFKE AI AW+LLTKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFSDYFKEEAIFFAWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+ A +LW+KISGL +KIIRI TNDNFW M +TGPCGPCSEIF+D G Sbjct: 121 SKDKLLVTVYHSDDVAAQLWRKISGLPDEKIIRIATNDNFWMMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ E+G+R++EIWNLVFMQ+EQ +K +R LP SIDTGMGLER+A VLQ Sbjct: 181 DKIFGGPPGSADEDGDRFVEIWNLVFMQYEQVSKDKRIELPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF LI+ S+++TG++ G+ +V+HRVI DHLRSS+FLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFSALIRESQRITGVEATGDFVVSHRVIADHLRSSAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM YA L E LM L+PAL EMG AYPEL++A+ LI E L+ E+ RF Sbjct: 301 VLRRIMRRAMRYAHFLDAKELLMWRLVPALIREMGQAYPELVRAESLISEILKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ HL + + NG+VAFKLYDT+G PLD+ QD L RG++ +D+ +FN Sbjct: 361 KTLERGLRLLNEESVHLKEGDCFNGEVAFKLYDTYGFPLDLTQDALRHRGIS-VDVNAFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E Q++ ARA+ G G TE +WFS++++ G T+F+GY+ Sbjct: 420 KAMEHQKAEARANWSGSGESVTETVWFSVRDQVGTTEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++ A++ GEIV++ SGQK +V +QTPFY E+GGQ+GD+G G+ Sbjct: 462 -----TEKAEGVITALICDGEIVDKVSSGQKAMLVVNQTPFYGESGGQIGDSGIISGENF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKKA+G+FVH V+ G +T + L +D RR++ NHSATH+LH AL Sbjct: 517 IFEVHDTQKKAKGVFVHIGEVKSGQAKTHDCVELAVDCVRRRKIRANHSATHILHKALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS ++PD LRFD +HS I +LK IED N+I+ QN V+TR+M +DA Sbjct: 577 TLGDHVVQKGSFVSPDRLRFDFSHSGQILLKDLKKIEDLANEIVLQNSEVITRLMTVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I+ GA AL G KY+D VRVVS+ E + S LCGGTHV TGEI L++IVS S Sbjct: 637 ISEGAIALFGEKYSDEVRVVSMGKRHEEIGEKDYWSIELCGGTHVHRTGEIGLIHIVSVS 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKL--Q 771 S+ AG+RRIEA+TG AR + Q ++L +A+ LK+ S N+ ++ + ++YR++ + Sbjct: 697 SVAAGVRRIEALTGTAARLYFRNQYKQLYDIAALLKMPSVFNLSKNIQGLLDDYRRIGKE 756 Query: 772 LIHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 L + + K+ N +K I ++FM +I + K+LK+++D+ +K+I SG++ Sbjct: 757 LSNLRTKIAFNDGATKDNKADIKIINGISFMGRVIQNISPKDLKTLVDSGKKQIGSGVVA 816 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 +GIS+ K SV++ VT+DL+DR +AVDL R+ + LGG GGGGRP MAQ+GGP G+KA Sbjct: 817 FIGISENGKGSVVVGVTDDLVDRLSAVDLVRIVSDTLGGKGGGGRPDMAQAGGPQGDKAY 876 Query: 887 QAIAGVASFLK 897 AIA + FL+ Sbjct: 877 DAIAALEVFLE 887 >gi|217979627|ref|YP_002363774.1| alanyl-tRNA synthetase [Methylocella silvestris BL2] gi|217505003|gb|ACK52412.1| alanyl-tRNA synthetase [Methylocella silvestris BL2] Length = 895 Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/913 (51%), Positives = 614/913 (67%), Gaps = 40/913 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR FL++F+KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MNGVNEIRAGFLDYFKKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+T+EF L Sbjct: 61 AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWKLITQEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY D+EAF LWKKI+G KIIRI ++DNFW+M +TGPCGPCSEIF+DQG Sbjct: 121 PKDRLLVTVYHTDDEAFDLWKKIAGFPDSKIIRIASSDNFWAMGDTGPCGPCSEIFYDQG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQFEQ ER LP+ SIDTGMGLER+A +LQ Sbjct: 181 ERLKGGPPGSPDEDGDRFLEFWNLVFMQFEQLGPGERIDLPRPSIDTGMGLERIAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 T+NYDIDL + LI A TG+ +G +HRVI DHLR+ +FLIADG+ P+NEGRGY Sbjct: 241 VTSNYDIDLMRALIVAIAAATGVDPDGPQKASHRVIADHLRACAFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LL EPLM L+P L EMG AYPELI+A+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLSAREPLMWRLVPVLSREMGQAYPELIRAESLIVETLRLEEARFI 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RGL +LD + L + L G VAFKLYDT+G PLD+ QD L AR LA +D+ FN Sbjct: 361 DTLARGLSILDEAVRDLPEGAPLPGQVAFKLYDTYGFPLDLTQDALRARSLA-VDVDGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ AR G G TE +WF++K++ GAT F+GY+ Sbjct: 420 TAMERQRADARRAWAGSGEAATETLWFAIKDEAGATDFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +V A+V+ G+ VE G+ ++ +QTPFYAE+GGQ+GDTG G+ Sbjct: 462 -----AEQAEGVVAALVKDGKPVERLNKGETGAIILNQTPFYAESGGQVGDTGVMSAAGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD +KK +FVH IVE G + ++L L++D+ R + NHSATHLLH +L Sbjct: 517 RFRVTDTKKKLGDLFVHEGIVEEGEITPGLALELSVDHARRSAIRANHSATHLLHESLRL 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + D LRFD TH KPI+ EL +ED N + N PVVTR+M ++A Sbjct: 577 VLGDHVAQKGSLVADDRLRFDFTHLKPISPEELTRVEDIANRAVTDNAPVVTRLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVH---SSALCGGTHVSSTGEIMLLY 709 IASGA AL G KY D VRVV++ Y DGG + S LCGGTHV+ TG+I L+ Sbjct: 637 IASGARALFGEKYGDEVRVVTMGYAQDREDSGDGGANRAFSVELCGGTHVARTGDIGLIA 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I SES++ AG+RRIEA T AR HL + +KL+ +A LK S+ + R+ + EE RK Sbjct: 697 ITSESAVAAGVRRIEAKTAAAARRHLNARSDKLEHIAVLLKSSEDDAEKRLAALLEERRK 756 Query: 770 L--QLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L +L A++KL + + + +I V F +S VD K+LKS+ D ++ + SG+ Sbjct: 757 LDRELADARKKLAMGGGEKAAAEAQEIGGVKFFGRAVSGVDLKDLKSLADEAKQTVGSGV 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + G+ + KA V++ VT DL++RF++V L RL+A LGG GGGGR MAQ+GGPNG Sbjct: 817 VAIAGVDSDGKAGVVVGVTADLVERFDSVALVRLAATELGGKGGGGRRDMAQAGGPNGAG 876 Query: 885 ADQAIAGVASFLK 897 D A+A +A+ L+ Sbjct: 877 VDAALAAIANGLR 889 >gi|86750846|ref|YP_487342.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris HaA2] gi|123292252|sp|Q2ITM9|SYA_RHOP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|86573874|gb|ABD08431.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris HaA2] Length = 891 Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/901 (51%), Positives = 612/901 (67%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNDIRSAFLNYFAKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF DQG Sbjct: 121 KKDKLLVTVYHTDDEAASYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS EE G+R++E WNLVFMQ+EQ K ER LP+ SIDTGMGLERMA +LQ Sbjct: 181 EHIFGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKDERLPLPRPSIDTGMGLERMANILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+ LI A+ G + + RVI DHLRSSSFLIADG+LP+NEGRGY Sbjct: 241 VDSVFETDLFRSLIDATSSALGRGPGEEDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +EPLM L+ AL EMG AYPEL++A+ +IEET+R E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +GD AF LYDT+G PLD+ QD L RG++ +DI SF Sbjct: 361 KTLDRGLAILDEKSASLKKGDMFDGDTAFTLYDTYGFPLDLTQDALRNRGIS-VDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WF L+EK GAT+F+GYD Sbjct: 420 DAMDRQRAKARASWAGSGEAATETVWFGLREKLGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V G+ V+ +G +V +QTPFYAE+GGQ+GDTG GDG+ Sbjct: 462 -----TETAEGVVTALVADGKEVDALKAGDSGAIVLNQTPFYAESGGQVGDTGVLSGDGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD KKA +FVH VE G ++ + +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFRVTDTLKKAGDLFVHFGTVEEGAIKRDAALQLDVDHARRSSIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPIT EL+ +ED NDI+ +N V TR+M +DA Sbjct: 577 VLGDHIAQKGSMVAPDRLRFDFVHQKPITPDELRRVEDIANDIVLENDEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ D G + S LCGGTHV TG+I L+ I E Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKTARDSGSNALGWSVELCGGTHVKRTGDIGLVSITGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S++ +G+RRIEA+TG+ AR K A+ L+ + ++ R+ + EE +KL + Sbjct: 697 SAVASGVRRIEALTGRYARQSANAAINTAKQAAAELRTTVDDMPARIAALMEERKKLERE 756 Query: 772 LIHAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L A++KL + ++ V M+ + ++ K+LKS++D +K++ SG Sbjct: 757 LSDARKKLAMGGGGAAGAADGGADVREVGGVKLMARAVEGIEIKDLKSLVDQGKKQLGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I LV S++ K S+++ VT DL+ RF+AVDL R ++ VLGG GGGG+P MAQ+GGP+G+ Sbjct: 817 VIALVATSEDGKGSIVVGVTPDLVARFSAVDLVRTASVVLGGKGGGGKPDMAQAGGPDGS 876 Query: 884 K 884 K Sbjct: 877 K 877 >gi|75675479|ref|YP_317900.1| alanyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255] gi|123613615|sp|Q3ST43|SYA_NITWN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|74420349|gb|ABA04548.1| alanyl-tRNA synthetase [Nitrobacter winogradskyi Nb-255] Length = 891 Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/901 (52%), Positives = 619/901 (68%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F NGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNDIRSAFLNYFAANGHQIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTQEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL TVY +D+ AF LWKKI+GL +IIRI +DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDRLTATVYIDDDGAFDLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E+ G+R++EIWNLVFMQ+E+ R LPK SIDTG GLER+A VLQ Sbjct: 181 DRIPGGPPGSPEQDGDRFVEIWNLVFMQYEKLPDGSRPNLPKPSIDTGAGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A+ +TG +G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPQGPMKASLRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ L EMG A+PEL +A+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L + ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+D+ SF Sbjct: 361 KTLERGLSILDEKSASLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDLASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q+++ARA G G E IWF L+EK GAT+F+GY+ Sbjct: 420 DAMEQQKAKARASWSGSGEAAAESIWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ GE + +G+ +V +QTPFY E+GGQ+GDTG I DG+ Sbjct: 462 -----TEAAEGVVAALVKDGEEADTLKAGESGAIVLNQTPFYGESGGQVGDTGFLIADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD QKKA +FVH VE+G+L M+L L +D+ R + NHSATHLLH AL Sbjct: 517 RFRVTDTQKKAGDLFVHLGTVEQGVLAPGMALALEVDHDRRSAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + P+ LRFD H+KPI++ EL+ IED ND++ +N V TR+M +DA Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFAHNKPISADELRCIEDIANDVVLENGEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA------LCGGTHVSSTGEIMLLYIVS 712 +GA AL G KY D VRVVS+ D G S+A LCGGTHV TG+I L+ +V Sbjct: 637 REAGARALFGEKYGDEVRVVSMGGTDRHGAASNALGWSVELCGGTHVKRTGDIGLISVVG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES++ +G+RRIEA+TG +AR H + K+ A L+ S ++ R+ + EE +KL Sbjct: 697 ESAVASGVRRIEALTGHQARHHANHAIQLAKTAAGELRTSLDDMPARIASLMEERKKLER 756 Query: 771 QLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L A++KL + + + + M+ + ++ K+LKS+ D +K++ SG Sbjct: 757 ELSEARKKLAMGGAASASSGATTGVRDVGGIKLMARSVEGIEIKDLKSLADQGKKQLGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ LV S + KASV++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 817 VVALVATSGDGKASVVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876 Query: 884 K 884 K Sbjct: 877 K 877 >gi|85715195|ref|ZP_01046179.1| alanyl-tRNA synthetase [Nitrobacter sp. Nb-311A] gi|85698110|gb|EAQ35983.1| alanyl-tRNA synthetase [Nitrobacter sp. Nb-311A] Length = 892 Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/902 (52%), Positives = 617/902 (68%), Gaps = 42/902 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL FF N H+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNDIRSAFLNFFAANDHQIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRSYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTQEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL TVY +D+EAF LWKKI+GL +IIRI DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDRLTATVYIDDDEAFDLWKKIAGLPESRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E+G+R++EIWNLVFMQ+E+ + R LPK SIDTG GLER+A VLQ Sbjct: 181 DRIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLSDGSRPNLPKPSIDTGAGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A+ +TG +G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPQGPMKASLRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ L EMG AYPEL +A+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMWRLVGVLVREMGEAYPELQRARSLIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+D+ SF Sbjct: 361 KTLDRGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDLASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q+++ARA G G E IWF L+EK GAT+F+GY+ Sbjct: 420 DAMEQQKAKARASWSGSGEAAAESIWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+VQ G+ + +G+ +V +QTPFY E+GGQ+GDTG DG+ Sbjct: 462 -----TESAEGVVVALVQDGKETDILKAGESGAIVLNQTPFYGESGGQVGDTGALTADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD QKKA +FVH IVE+G+L M+L L +D+ R + NHSATHLLH AL Sbjct: 517 CFRVTDTQKKAGDLFVHLGIVEQGVLAPGMALALEVDHDRRAAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + P+ LRFD H+KPI+ EL+ IED ND++ +N V TR+M +DA Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFAHNKPISGDELRRIEDIANDVVLENGEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-GGVHSSA------LCGGTHVSSTGEIMLLYIVS 712 +GA AL G KY D VRVVS+ G S+A LCGGTHV TG+I L+ ++S Sbjct: 637 REAGARALFGEKYGDEVRVVSMGGAGRQGAPSNALGWSVELCGGTHVKRTGDIGLISVIS 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES++ +G+RRIEA+TG RAR H + K+ A L+ S ++ R+ + EE +KL Sbjct: 697 ESAVASGVRRIEALTGHRARHHANDAIQLAKTAAGELRTSLDDMPARIAALVEERKKLER 756 Query: 771 QLIHAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +L A++KL + + + + M+ + ++ K+LKS+ D +K++ S Sbjct: 757 ELSEARKKLAMGGGAASASSGAATGVRDVGGIKLMARSVEGIEIKDLKSLADQGKKQLGS 816 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G++ LV S + KASV++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 817 GVVALVATSGDGKASVVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDG 876 Query: 883 NK 884 K Sbjct: 877 AK 878 >gi|91976212|ref|YP_568871.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] gi|123735560|sp|Q13AB9|SYA_RHOPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91682668|gb|ABE38970.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisB5] Length = 891 Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/901 (52%), Positives = 616/901 (68%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F KNGH+++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSAFLNYFAKNGHDIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRPYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKE+ L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY ED+EAF LWKKI+GL KIIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 121 PKDRLLVTVYSEDDEAFGLWKKIAGLPESKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIFGGPPGSLEEDGDRFIEIWNLVFMQFEQVAPGNRTPLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NY+IDLF+ LI+A ++TG +G + RVI DHLR++SFLIADG+LP+NEGRGY Sbjct: 241 KHDNYEIDLFQALIRAIAELTGADPQGEQKGSLRVIADHLRAASFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +LLG EPLM L+ AL EMG AYPEL++A+ +IEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAEAMIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L K ++ +GD AF LYDT+G PLD+ QD L RG++ +DI SF Sbjct: 361 KTLERGLTILDEKSGSLKKGDMFDGDTAFTLYDTYGFPLDLTQDALRNRGIS-VDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WF L++K GAT+F+GYD Sbjct: 420 DAMDRQRAKARASWAGSGEAATETVWFGLRDKLGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G+ VE +G +V +QTPFYAE+GGQ+GDTG G+G+ Sbjct: 462 -----TETAEGVVTALVKDGKEVEALKAGDAGAIVLNQTPFYAESGGQVGDTGVLTGEGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD KKA +FVH VE G ++ E +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFRVTDTLKKAGDLFVHFGTVEEGTVKPEAALALEVDHSRRSSIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPIT EL+ +ED NDI+ +N V TR+M +DA Sbjct: 577 VLGDHIAQKGSMVAPDRLRFDFVHQKPITQDELRRVEDIANDIVLENDEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA------LCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ S+A LCGGTHV TG+I L+ + E Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKASREHGSNAFGWSVELCGGTHVRRTGDIGLISVTGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S++ +G+RRIEA+TG+ AR K+ A+ L+ + ++ R+ + +E +KL + Sbjct: 697 SAVASGVRRIEALTGRHARQSANAAMATAKAAAAELRTTLDDMPARIASLMDERKKLERE 756 Query: 772 LIHAKRKL--------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L A++KL + V ++ + ++ K+LKS++D +K++ SG Sbjct: 757 LSDARKKLAMGGSGAAGAADGGADVRDVGGVKLLARAVEGIEIKDLKSLVDQGKKQLGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I LV S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+ Sbjct: 817 VIALVAKSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGS 876 Query: 884 K 884 K Sbjct: 877 K 877 >gi|49474375|ref|YP_032417.1| alanyl-tRNA synthetase [Bartonella quintana str. Toulouse] gi|59798531|sp|Q6FZF1|SYA_BARQU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49239879|emb|CAF26277.1| Alanyl-tRNA synthetase [Bartonella quintana str. Toulouse] Length = 888 Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/913 (51%), Positives = 637/913 (69%), Gaps = 41/913 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+SIR+TFL++F NGH++L SS L+P NDPTLMFTN+GMV FKN+FTG E+ + Sbjct: 1 MNSVNSIRSTFLDYFHLNGHKVLSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEQRPCKQ 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVR GGKHNDLDNVG T RHHTFFEMLGNFSF YFKE AI L+W+LLTKEF L Sbjct: 61 ATTAQKCVRVGGKHNDLDNVGYTARHHTFFEMLGNFSFSDYFKEEAIFLSWNLLTKEFCL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+ A +LW+KIS LS +KI+RI T DNFW+M ETGPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHSDDVAAELWRKISNLSDEKIVRIATVDNFWAMGETGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ EG +R+IEIWNLVFMQ+EQ +K+ER LP SIDTGMGLER+A VLQ Sbjct: 181 DEIWGGPPGSANEGGDRFIEIWNLVFMQYEQVSKEERVELPHPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI AS+++TG++ G+ I +HRVI DHLRS +FLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFRALIGASQEITGVEATGDFIASHRVISDHLRSCAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG EPLM LLP L EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHFLGVKEPLMWRLLPVLVREMGQAYPELVRAESLISETLKLEEMRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LL+ S+L + + NG++AFKLYDT+G PLD+ QD L RG++ +D+ +F+ Sbjct: 361 KTLERGLGLLNEASSNLKEGDHFNGEIAFKLYDTYGFPLDLTQDALRCRGIS-VDVDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A++ Q++ ARA+ G G TE IWF+++++ GAT+F+GY++ + Sbjct: 420 KAMQRQKTEARANWSGSGEAVTETIWFAVRDRVGATEFLGYEIEKA-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I+ A++ G++V+ SGQK +V +QTPFY E+GGQ+GD+G Sbjct: 466 ---------EGIITALICDGKVVDHISSGQKAIIVVNQTPFYGESGGQIGDSGIISSGCF 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QKK+ G+F+H V+ G +T + LT+D R+++ NHSATHLLH AL Sbjct: 517 VFEVHDTQKKSNGVFIHIGEVKSGQAKTFECVELTVDVVRRQKIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG HV+Q GS + PD LRFD +H K ++S ELK IED NDI+ QN V T +M +DA Sbjct: 577 ILGPHVTQKGSLVLPDRLRFDFSHPKSVSSEELKKIEDLANDIVLQNSEVTTHLMALDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSES 714 I+ GA AL G KY D VRVVS+ E G+ S LCGGTHV TG+I L++IVSES Sbjct: 637 ISEGAMALFGEKYGDEVRVVSMGNPLEPEGLKKRWSIELCGGTHVERTGDIGLIHIVSES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772 S+ AG+RRIEA+TG AR + QDE+++ ++S LK +V RV + EY +L Sbjct: 697 SVAAGVRRIEALTGTAARLYFNRQDERIREISSLLKTVPADVGERVSNLLHEYNRLSQAC 756 Query: 773 IHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 I ++K+ L N ED++ I ++FM ++ + ++LK+++D +K+I SG++ Sbjct: 757 IELRKKIILSGNTIKNNQEDITI--INGISFMGRVVRNILPRDLKALVDDGKKQIGSGVV 814 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + +++ K S ++ VT DL D+ NAV+L + + VLGG GGGGRP MAQSGGP G+KA Sbjct: 815 AFISVAENGKGSAVVGVTNDLTDKLNAVNLIHILSDVLGGKGGGGRPDMAQSGGPEGDKA 874 Query: 886 DQAIAGVASFLKK 898 A+A + + L+K Sbjct: 875 VGALAALRASLEK 887 >gi|146341851|ref|YP_001206899.1| alanyl-tRNA synthetase [Bradyrhizobium sp. ORS278] gi|205829995|sp|A4YXQ6|SYA_BRASO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146194657|emb|CAL78682.1| alanyl-tRNA synthetase [Bradyrhizobium sp. ORS278] Length = 891 Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/897 (52%), Positives = 613/897 (68%), Gaps = 39/897 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL FF NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLNFFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKENAIELAWKLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY +D+EAF LWKKI+GL +IIRI +DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLTATVYIDDDEAFGLWKKIAGLPESRIIRIAGSDNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+E +G+R+IEIWNLVFMQ+EQ R LPK SIDTG GLER+A VLQ Sbjct: 181 DKIWGGPPGSAEADGDRFIEIWNLVFMQYEQLEGGVRNPLPKPSIDTGAGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A +T +G + RVI DHLR+SSFLI+DG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAIADLTNADPQGPQKASLRVIADHLRASSFLISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL EMG AYPELI+A+ LI+ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAREPLMHKLVGALTREMGQAYPELIRAEGLIKETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L K ++ +GDVAF LYDT+G PLD+ QD L +RG++ +D SF Sbjct: 361 KTLERGLAILDEKSASLSKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGIS-VDQASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q+++ARA G G TE +WF L+EK GAT+F+GY+ Sbjct: 420 DAMERQKAKARAAWAGSGEAATETVWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G V+ +G+ +V +QTPFY E+GGQ+GDTG G+G+ Sbjct: 462 -----TETAEGAVTALVKDGAEVDSLKAGESGAIVLNQTPFYGESGGQVGDTGVLTGEGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R++ITD QKKA +F H VE+G L+ L L +D+ R + NHSATH+LH AL Sbjct: 517 RVRITDTQKKAGDLFAHIGTVEQGTLKLGTPLQLDVDHIRRSAIRANHSATHILHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS ++PD LRFD H KPIT+ EL +ED ND++ +N V TR+M +DA Sbjct: 577 VLGDHIAQRGSLVSPDRLRFDFVHPKPITAEELARVEDIANDVVLENAEVTTRLMGLDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ D G + S LCGGTHV TG+I L+ + SE Sbjct: 637 REAGARALFGEKYGDEVRVVSMGNAARDHGNNAMGWSVELCGGTHVKRTGDIGLIAVTSE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S++ +G+RRIEA+T + AR+H K+ A+ L+ + V R+ + EE +KL + Sbjct: 697 SAVASGVRRIEALTARGARAHANHNLSLAKAAAAELRTTVDEVPARITALMEERKKLERE 756 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 L A++KL + ++A + M+ + V+ K+LKS++D +K++ SG++ Sbjct: 757 LSDARKKLAMGGGAAAGGAAAGIREVAGIKLMARAVDGVEVKDLKSLVDEAKKQLGSGVV 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +VG S++ KA V++ VT DL RFNAV+L R +++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 AIVGRSEDGKAGVVVGVTADLTARFNAVELVRAASEALGGKGGGGRPDMAQAGGPDG 873 >gi|254505107|ref|ZP_05117258.1| alanyl-tRNA synthetase [Labrenzia alexandrii DFL-11] gi|222441178|gb|EEE47857.1| alanyl-tRNA synthetase [Labrenzia alexandrii DFL-11] Length = 885 Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/912 (50%), Positives = 623/912 (68%), Gaps = 46/912 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+ FL++F+ N HE++ S L+P NDPTLMF N+GM FKN+FTG E Y Sbjct: 1 MTGVNEIRSAFLDYFKANDHEVVDSGPLVPRNDPTLMFANAGMNQFKNVFTGLETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW+L+TKE+ L Sbjct: 61 AVTAQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY ED++A WKKI+GLS DKIIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 PKDRLLVTVYAEDDDAAVFWKKIAGLSDDKIIRIPTSDNFWTMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PG+ EE G+R++EIWNLVFMQ+E Q R LP+ SIDTGMG+ER+ATVLQ Sbjct: 181 DHIWGGPPGTPEEDGDRFVEIWNLVFMQYE-QTPDSRLDLPRPSIDTGMGIERLATVLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLF+ LI ASE TG++ G+ + +HRVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 240 VHNNYDIDLFRALISASEHETGVEASGDALSSHRVISDHLRSTSFLIADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRR M +A LLG +PLM L+P+L EMG AYPEL +A+ LI ETL+ E+ RF Sbjct: 300 VLRRIMRRGMRHAHLLGARDPLMHKLVPSLIREMGRAYPELTRAEALITETLKLEETRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD L L+G+ AFKLYDT+G PLD+ QD L R + +D F+ Sbjct: 360 KTLERGLGLLDTATEDLTAGGQLDGETAFKLYDTYGFPLDLTQDALRVRDIT-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA G G TE +WF++KEKYGAT F+GY+ Sbjct: 419 AAMERQKAEARAAWSGSGGAATEAVWFAMKEKYGATDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T IV + E +G+ VV +QTPFY E+GGQ+GDTG G+ Sbjct: 461 -----TEVAEGIVAGLAADDAETNELKAGETGFVVLNQTPFYGESGGQVGDTGVMTAPGV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ +TD QKKA+G+FVH V+ G + E++L L +D+ R + NH+ATHL+H AL Sbjct: 516 KITVTDTQKKADGLFVHVVTVDEGTVTPELALELKVDHDRRSAVRSNHTATHLVHEALRE 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS ++PD LRFD +H KP++ EL +E N+II QN V TR+M +DA Sbjct: 576 VLGTHVAQKGSLVSPDRLRFDFSHPKPMSDDELAIVETFANEIILQNASVETRLMAVDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 I +GA AL G KY + VRVVS+ + G +S LCGGTHV TG+I L+ +VSE Sbjct: 636 IEAGAMALFGEKYGEEVRVVSMGTALHGDKTGKPYSLELCGGTHVKRTGDIGLVTLVSEG 695 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ AG+RRIEA+TG AR++L QD++L+ +A LKV G+V RV ++ EE RKL +L Sbjct: 696 AVAAGVRRIEALTGAEARTYLDTQDKRLREVAGILKVGTGDVPSRVAQLVEERRKLEKEL 755 Query: 773 IHAKRKLQLN--------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 A++KL + V+D K+ M+ + ++ K+LK + D + ++ SG+ Sbjct: 756 ADARKKLAMGGGADGGTPVKDAGSFKL-----MARTVEGINPKDLKGMADEAKTQLGSGV 810 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++L+ ++++ KA+++ VT DL ++ +AVDL R+ ++ LGG GGGGRP MAQ+GGP+G+K Sbjct: 811 VVLINVAEDGKAAIVTAVTRDLTEKVSAVDLVRIGSEALGGRGGGGRPDMAQAGGPDGSK 870 Query: 885 ADQAIAGVASFL 896 A+ A++ + + L Sbjct: 871 AESAVSAIEAHL 882 >gi|205371825|sp|Q89I89|SYA_BRAJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 892 Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/909 (51%), Positives = 622/909 (68%), Gaps = 41/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL FF +NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNEIRSTFLNFFAENGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW L+TK+F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWKLITKDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L +TVY D+EA LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 NKDKLLVTVYHTDDEAHGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++E WNLVFMQ+EQ K+ER LP+ SIDTGMGLERMA ++Q Sbjct: 181 DHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERVDLPRPSIDTGMGLERMACIMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+HLI A+ G + + RVI DHLRSS+FL++DG+LP+NEGRGY Sbjct: 241 VDSVFETDLFRHLIDATASALGSGPNEQTVASFRVIADHLRSSAFLVSDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL EMG AYPEL++A+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMHRLVWALVREMGQAYPELMRAEKLIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL +LD + L K ++ +GDVAF LYDT+G PLD+ QD L +RG+ G+D +F Sbjct: 361 KTLTRGLAILDEKSASLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGI-GVDQSAFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q+++AR G G +E IWF L+EK GAT+F+GY+ Sbjct: 420 DAMERQKAKARESWKGSGEAASEAIWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538 T +V A+V+ G+ +G+ +V +QTPFYAE+GGQ+GDTG +G+ G Sbjct: 462 -----TESAEGVVSALVKDGQEAASLKAGETGALVLNQTPFYAESGGQVGDTGVLLGEGG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ ++TD QKK +FVH VE G L+ +L L +D+ R + +HSATHL+H AL Sbjct: 517 VKFRVTDTQKKLGDLFVHVGTVESGELKLGTALQLEVDHSRRSSIRAHHSATHLIHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG H++Q GS + PD LRFD H KPIT+ EL +ED ND++ +N V TR+M ++ Sbjct: 577 QVLGDHIAQRGSMVAPDRLRFDFVHPKPITAEELARVEDIANDVVLENDEVTTRVMGVDE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVS 712 A +GA AL G KY D VRVVS+ + G + S LCGGTHV TG+I L+ + Sbjct: 637 AREAGARALFGEKYGDEVRVVSMGRTARERGANALGWSVELCGGTHVRRTGDIGLITLTG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES++ +G+RRIEA+TG AR H K+ A+ L+ S +V R+ + EE +KL Sbjct: 697 ESAVASGVRRIEALTGNYARKHANDTMALAKTAANELRTSIDDVPARITALMEERKKLER 756 Query: 771 QLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L A++KL + N ++ DV M+ + ++ K+LKS+ D +K+I SG Sbjct: 757 ELSDARKKLAMGGGAAASNGAASGVREVGDVKLMARAVEGIEMKDLKSLADDGKKQIGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ +VG++ + KA +++ VT DL RFNAV+L R++++ LGG GGGGRP MAQ+GGP+G Sbjct: 817 VVAIVGVTGDGKAGIVVGVTADLTARFNAVNLVRVASEALGGKGGGGRPDMAQAGGPDGA 876 Query: 884 KADQAIAGV 892 KA +A+A + Sbjct: 877 KAPEALAAI 885 >gi|27380861|ref|NP_772390.1| alanyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] gi|27354027|dbj|BAC51015.1| alanyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110] Length = 894 Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/909 (51%), Positives = 622/909 (68%), Gaps = 41/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL FF +NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 3 MSGVNEIRSTFLNFFAENGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW L+TK+F L Sbjct: 63 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWKLITKDFGL 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L +TVY D+EA LWKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 123 NKDKLLVTVYHTDDEAHGLWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 182 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++E WNLVFMQ+EQ K+ER LP+ SIDTGMGLERMA ++Q Sbjct: 183 DHIWGGPPGSPEEDGDRFLEFWNLVFMQYEQVTKEERVDLPRPSIDTGMGLERMACIMQG 242 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLF+HLI A+ G + + RVI DHLRSS+FL++DG+LP+NEGRGY Sbjct: 243 VDSVFETDLFRHLIDATASALGSGPNEQTVASFRVIADHLRSSAFLVSDGVLPSNEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL EMG AYPEL++A+ LIEETLR E+ RF Sbjct: 303 VLRRIMRRAMRHAQLLGAKEPLMHRLVWALVREMGQAYPELMRAEKLIEETLRLEETRFR 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL +LD + L K ++ +GDVAF LYDT+G PLD+ QD L +RG+ G+D +F Sbjct: 363 KTLTRGLAILDEKSASLKKGDMFDGDVAFTLYDTYGFPLDLTQDALKSRGI-GVDQSAFT 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q+++AR G G +E IWF L+EK GAT+F+GY+ Sbjct: 422 DAMERQKAKARESWKGSGEAASEAIWFPLREKLGATEFLGYE------------------ 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538 T +V A+V+ G+ +G+ +V +QTPFYAE+GGQ+GDTG +G+ G Sbjct: 464 -----TESAEGVVSALVKDGQEAASLKAGETGALVLNQTPFYAESGGQVGDTGVLLGEGG 518 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ ++TD QKK +FVH VE G L+ +L L +D+ R + +HSATHL+H AL Sbjct: 519 VKFRVTDTQKKLGDLFVHVGTVESGELKLGTALQLEVDHSRRSSIRAHHSATHLIHEALR 578 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG H++Q GS + PD LRFD H KPIT+ EL +ED ND++ +N V TR+M ++ Sbjct: 579 QVLGDHIAQRGSMVAPDRLRFDFVHPKPITAEELARVEDIANDVVLENDEVTTRVMGVDE 638 Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVS 712 A +GA AL G KY D VRVVS+ + G + S LCGGTHV TG+I L+ + Sbjct: 639 AREAGARALFGEKYGDEVRVVSMGRTARERGANALGWSVELCGGTHVRRTGDIGLITLTG 698 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES++ +G+RRIEA+TG AR H K+ A+ L+ S +V R+ + EE +KL Sbjct: 699 ESAVASGVRRIEALTGNYARKHANDTMALAKTAANELRTSIDDVPARITALMEERKKLER 758 Query: 771 QLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L A++KL + N ++ DV M+ + ++ K+LKS+ D +K+I SG Sbjct: 759 ELSDARKKLAMGGGAAASNGAASGVREVGDVKLMARAVEGIEMKDLKSLADDGKKQIGSG 818 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ +VG++ + KA +++ VT DL RFNAV+L R++++ LGG GGGGRP MAQ+GGP+G Sbjct: 819 VVAIVGVTGDGKAGIVVGVTADLTARFNAVNLVRVASEALGGKGGGGRPDMAQAGGPDGA 878 Query: 884 KADQAIAGV 892 KA +A+A + Sbjct: 879 KAPEALAAI 887 >gi|90420928|ref|ZP_01228833.1| alanyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1] gi|90334903|gb|EAS48675.1| alanyl-tRNA synthetase [Aurantimonas manganoxydans SI85-9A1] Length = 890 Score = 910 bits (2351), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/894 (52%), Positives = 612/894 (68%), Gaps = 39/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F KN HE + SS L+P NDPTLMFTN+GMV FKN+FTG E YQ Sbjct: 1 MSGVNEIRSAFLDYFAKNDHERVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVETRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKEF L Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 RL +TVY EDEEA LW+KI+GLS D+IIRI+T+DNFW+M ETGPCGPCSEIFFD Sbjct: 121 PADRLLVTVYSEDEEAAALWRKIAGLSDDRIIRISTSDNFWAMGETGPCGPCSEIFFDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQFEQ + R LP+ SIDTGMGLER+A +LQ Sbjct: 181 EGIPGGPPGSPDEDGDRFIEIWNLVFMQFEQLSADNRVELPRPSIDTGMGLERIAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI + E G + EG+++ +HRVI DHLRS++FLIADG+LP+NEGRGY Sbjct: 241 VHDNYDIDLFKALIASVEATIGSRAEGDSVASHRVIADHLRSTAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A++LG EP++ +LP L EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAKMLGAREPVLYKMLPTLVAEMGRAYPELVRAEALISETLKLEERRFL 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LL + L+G+ AFKLYDT+G PLD+ QD L RG+ +D+ +FN Sbjct: 361 QTLDRGLSLLTDATEGMDAGAKLSGETAFKLYDTYGFPLDLTQDALRQRGIE-VDLDAFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ AR G G +E +WF ++E+ GAT+F+GYD Sbjct: 420 TAMERQKAEARKSWTGSGEAASETVWFPIRERVGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G V A +G +V +V +QTPFY E+GGQLGDTG GDG+ Sbjct: 462 -----TERAEGSVMAVVRNGTEVPAAGAGDEVAIVLNQTPFYGESGGQLGDTGIMRGDGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + I D QK AEG+FVH V+ G ++ M L L +D+ R ++ NHSATHLLH L Sbjct: 517 EIVIADTQKFAEGLFVHRGKVKSGTVKAGMPLDLIVDHGRRTKIRANHSATHLLHEGLRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSHV+Q GS + P+ LRFD +H KPI EL +E N I+ QN PV TR+M +DA Sbjct: 577 ILGSHVAQKGSMVAPERLRFDFSHPKPIEPGELAEVERLANGIVLQNAPVETRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV----EYEDGG-VHSSALCGGTHVSSTGEIMLLYIVSES 714 IASGA AL G KY D VRVVS+ E E G S LCGGTHV++TG+I L++I+ ES Sbjct: 637 IASGAMALFGEKYGDEVRVVSMGTGEEGEKAGKTFSIELCGGTHVNATGDIGLVHILGES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ AG+RR+EA+TGQ AR HL+ QD +++ +AS LKVS + R+E + EE R+L+ Sbjct: 697 AVGAGVRRVEALTGQAARDHLLAQDARVRQMASILKVSPADAPARLEAVVEERRRLEREL 756 Query: 775 AKRKLQLNV-------EDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 A+ + +L + E S K +A V F+ +++ V K+LK ++D + ++ SG++ Sbjct: 757 AEARKRLALAGDGASGEGGSASKVVAGVGFLGRVLNGVAGKDLKGLVDEAKTQLGSGVVA 816 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 V + KASV++ VT DL DRF+AV L R ++ +GG GGGGRP MAQ+GGP Sbjct: 817 FVSVDA-GKASVVVGVTADLTDRFDAVALVRDASVAIGGKGGGGRPDMAQAGGP 869 >gi|304391435|ref|ZP_07373377.1| alanyl-tRNA synthetase [Ahrensia sp. R2A130] gi|303295664|gb|EFL90022.1| alanyl-tRNA synthetase [Ahrensia sp. R2A130] Length = 884 Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 472/906 (52%), Positives = 613/906 (67%), Gaps = 34/906 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL +F+KNGH + SS L+P NDPTLMFT +GMV FKN+FTG E Y Sbjct: 1 MSGVNDIRSTFLSYFEKNGHAAVDSSPLVPRNDPTLMFTAAGMVQFKNLFTGLETRNYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT+E+ + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIEFAWNLLTEEYGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RL +TVY +D+EAF LWKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DASRLLVTVYHDDDEAFDLWKKIAGLSDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQFEQ ER LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQFEQVTVDERVNLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLFK LI ASEQ TG+ + N +HRVI DHLR+S FLIADG+LP NEGRGY Sbjct: 241 THDNYEIDLFKALISASEQATGVGSDDNTRASHRVIADHLRASCFLIADGVLPGNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL +MG A+PEL + + L+ ETL E+ RF Sbjct: 301 VLRRIMRRAMRHASLLGAQDPLMYRLVPALVAQMGEAFPELRRTQSLMTETLNLEEVRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL RGL LLD + L + L+G VAFKLYDT+G PLD+ QD L R + +D ++ Sbjct: 361 KTLTRGLDLLDTASADLKAGDALDGRVAFKLYDTYGFPLDLTQDALRRRDIT-VDTDEYS 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+EEQ++ ARA G G + IWF L+EK+GAT+F+GY+ Sbjct: 420 TAMEEQKAVARASWAGAGGAADDAIWFKLREKHGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V AI+Q G V A G +V V+ +QTPFYAE+GGQ+GDTG + Sbjct: 462 -----TEKAEGSVLAILQDGAEVSTAKKGDEVSVILNQTPFYAESGGQMGDTGTLVVGET 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L ITD +K+ +G+FVH V+ G L+ L ID+ R +L NHSATHL+H AL Sbjct: 517 KLTITDTKKRGDGLFVHMGTVDSGTLKVGDGASLEIDHARRSKLRSNHSATHLVHEALRE 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HVSQ GS + P+ LRFD +HSKP+ + E++ IE N+ + QN V T +M +DA Sbjct: 577 TLGDHVSQKGSLVAPERLRFDFSHSKPVETEEMRRIEAMANEYVLQNSQVSTTLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 I GA A G KY D VRVVS+ E + S LCGGTHV +TG+I L+ +V ES+ Sbjct: 637 IELGAQAQFGEKYGDEVRVVSMGKVGEGNEAKAWSLELCGGTHVKNTGDIGLVTVVGESA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + +G+RRIEA+TGQ AR +L+ QDE L+S A+ LK + +V RV + +E +KL +L Sbjct: 697 VSSGVRRIEALTGQAAREYLLQQDELLRSTAAKLKTTPADVPTRVAALIDERKKLERELA 756 Query: 774 HAKRKLQLNVE---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 AK++L L V+ + + I V F+ ++ V ++LK ++D + +I SG++ + Sbjct: 757 EAKKQLALGVDGGTEAAAEDIGGVQFVGRVLQGVSPRDLKGLVDEEKTRIGSGVVAIAAN 816 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 +++ K +V++ VT+DL DRF+AV L R ++ LGG GGGGRP MAQ+GGP+G D A+ Sbjct: 817 NEDGKGAVVVGVTKDLTDRFDAVVLVRAGSEALGGKGGGGRPDMAQAGGPDGANVDAALD 876 Query: 891 GVASFL 896 V + L Sbjct: 877 AVRAAL 882 >gi|205830261|sp|Q1QMV7|SYA_NITHX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 891 Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/901 (51%), Positives = 614/901 (68%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNDIRSAFLNYFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTEEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY +D+EAF LWKKI+GL +IIRI DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLIATVYIDDDEAFGLWKKIAGLPDSRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E+G+R++EIWNLVFMQ+E+ R LPK SIDTG GLER+A VLQ Sbjct: 181 DKIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLPDGSRLNLPKPSIDTGAGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A+ +TG G + RVI DHLR++SFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLFVALIRAAADLTGADPHGPMKASLRVIADHLRATSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ L EMG A+PEL +A+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKEPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+DI SF Sbjct: 361 KTLERGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q+++ARA G G TE IWF L+EK GAT+F+GY+ Sbjct: 420 DAMEQQKAKARASWSGSGEAATETIWFPLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G+ + +G+ +V +QTPFY E+GGQ+GDTG GDG+ Sbjct: 462 -----TEIAEGAVAALVKDGKEADSLKAGESGAIVLNQTPFYGESGGQVGDTGILTGDGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R+++TD QKKA +FVH VE+G L M+L L +D R + NHSATHLLH AL Sbjct: 517 RVRVTDTQKKAGDLFVHLGTVEQGTLTPGMALALEVDRARRGAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + P+ LRFD H+KPI++ EL+ IED ND++ +N V TR+M +DA Sbjct: 577 VLGDHIAQRGSLVAPERLRFDFVHNKPISADELRRIEDIANDVVLENGEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSA------LCGGTHVSSTGEIMLLYIVS 712 +GA AL G KY D VRVVS+ G S+A LCGGTHV TG+I L+ + Sbjct: 637 REAGARALFGEKYGDEVRVVSMGSTGRQGAASNALGWSVELCGGTHVKRTGDIGLISVTG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES++ +G+RRIEA+TG AR H + K+ A L+ + ++ R+ + EE +KL Sbjct: 697 ESAVASGVRRIEALTGHHARHHANDAIQLAKTAAGELRTTLDDMPPRITSLMEERKKLER 756 Query: 771 QLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L A++KL + + + + M+ + ++ K+LK++ D +K++ SG Sbjct: 757 ELSEARKKLAMGGGAASASSGAAGVRDVGGIKLMARSVEGIEIKDLKNLADQGKKQLGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ LV S + KAS+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 817 VVALVATSGDGKASIVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876 Query: 884 K 884 K Sbjct: 877 K 877 >gi|92117171|ref|YP_576900.1| alanyl-tRNA synthetase [Nitrobacter hamburgensis X14] gi|91800065|gb|ABE62440.1| alanyl-tRNA synthetase [Nitrobacter hamburgensis X14] Length = 897 Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/901 (51%), Positives = 614/901 (68%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F NGHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 7 MSGVNDIRSAFLNYFAANGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYQR 66 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+T+EF L Sbjct: 67 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWKLVTEEFGL 126 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY +D+EAF LWKKI+GL +IIRI DNFW M +TGPCGPCSEIF+D G Sbjct: 127 PKDKLIATVYIDDDEAFGLWKKIAGLPDSRIIRIAGADNFWQMGDTGPCGPCSEIFYDHG 186 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E+G+R++EIWNLVFMQ+E+ R LPK SIDTG GLER+A VLQ Sbjct: 187 DKIPGGPPGSPDEDGDRFVEIWNLVFMQYEKLPDGSRLNLPKPSIDTGAGLERVAAVLQG 246 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDLF LI+A+ +TG G + RVI DHLR++SFLIADG+LP+NEGRGY Sbjct: 247 KHDNYDIDLFVALIRAAADLTGADPHGPMKASLRVIADHLRATSFLIADGVLPSNEGRGY 306 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ L EMG A+PEL +A+ LIEETLR E+ RF Sbjct: 307 VLRRIMRRAMRHAQLLGAKEPLMWRLVGVLVREMGEAFPELQRARPLIEETLRLEETRFR 366 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L ARG+ G+DI SF Sbjct: 367 KTLERGLSILDEKSASLKKGDMFDGETAFTLYDTYGFPLDLTQDALRARGI-GVDIASFT 425 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q+++ARA G G TE IWF L+EK GAT+F+GY+ Sbjct: 426 DAMEQQKAKARASWSGSGEAATETIWFPLREKLGATEFLGYE------------------ 467 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G+ + +G+ +V +QTPFY E+GGQ+GDTG GDG+ Sbjct: 468 -----TEIAEGAVAALVKDGKEADSLKAGESGAIVLNQTPFYGESGGQVGDTGILTGDGV 522 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R+++TD QKKA +FVH VE+G L M+L L +D R + NHSATHLLH AL Sbjct: 523 RVRVTDTQKKAGDLFVHLGTVEQGTLTPGMALALEVDRARRGAIRANHSATHLLHEALRQ 582 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + P+ LRFD H+KPI++ EL+ IED ND++ +N V TR+M +DA Sbjct: 583 VLGDHIAQRGSLVAPERLRFDFVHNKPISADELRRIEDIANDVVLENGEVTTRLMAVDDA 642 Query: 660 IASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSA------LCGGTHVSSTGEIMLLYIVS 712 +GA AL G KY D VRVVS+ G S+A LCGGTHV TG+I L+ + Sbjct: 643 REAGARALFGEKYGDEVRVVSMGSTGRQGAASNALGWSVELCGGTHVKRTGDIGLISVTG 702 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES++ +G+RRIEA+TG AR H + K+ A L+ + ++ R+ + EE +KL Sbjct: 703 ESAVASGVRRIEALTGHHARHHANDAIQLAKTAAGELRTTLDDMPPRITSLMEERKKLER 762 Query: 771 QLIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L A++KL + + + + M+ + ++ K+LK++ D +K++ SG Sbjct: 763 ELSEARKKLAMGGGAASASSGAAGVRDVGGIKLMARSVEGIEIKDLKNLADQGKKQLGSG 822 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ LV S + KAS+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 823 VVALVATSGDGKASIVVGVTPDLVTRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 882 Query: 884 K 884 K Sbjct: 883 K 883 >gi|316932874|ref|YP_004107856.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris DX-1] gi|315600588|gb|ADU43123.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris DX-1] Length = 890 Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/900 (51%), Positives = 617/900 (68%), Gaps = 40/900 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWELITRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 NKHQLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS E+G+R++E WNLVFMQ++Q K ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI A+ G + + RVI DHLRSSSFLIADG+LP+NEGRGY Sbjct: 241 VDSVFDTDLFRSLIDATASALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +EPLM L+ AL EMG AYPEL++A+ +IEET+R E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L RG+ +DI SF Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-NVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WFSL+EK+GAT+F+GYD Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKFGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G V+ +G +V +QTPFYAE+GGQ+GDTG DG+ Sbjct: 462 -----TETAEGVVMALVKDGTEVDALKAGDAAAIVMNQTPFYAESGGQVGDTGVLAADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +T+ KKA +FVH VE+G ++ +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFVVTETLKKAGDLFVHFGTVEQGTIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPIT EL+ +ED NDI+ +N VVTR+M +DA Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSA-LCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ E+ + S LCGGTHV TG+I L+ I +E Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAAREHGSNALGWSVELCGGTHVKRTGDIGLVSITAE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S++ +G+RRIEA+TG+ AR + K+ A+ L+ + ++ R+ + +E +KL + Sbjct: 697 SAVASGVRRIEALTGRAARHNANAAISTAKTAAAELRTTLDDMPARIAALMDERKKLERE 756 Query: 772 LIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L A++KL + +I V M+ + ++ K+LK ++D +K+I SG+ Sbjct: 757 LSEARKKLAMGGSASGDGAAASDVREIGGVKLMARTVQGIEIKDLKGLVDQGKKQIGSGV 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I LV S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K Sbjct: 817 IALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 876 >gi|192292738|ref|YP_001993343.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1] gi|192286487|gb|ACF02868.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris TIE-1] Length = 889 Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/899 (51%), Positives = 616/899 (68%), Gaps = 39/899 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 KKDKLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS E+G+R++E WNLVFMQ++Q K ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI A+ G + + RVI DHLRSSSFLIADG+LP+NEGRGY Sbjct: 241 VDSVFDTDLFRSLIDATSSALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +EPLM L+ AL EMG AYPEL++A+ +IEET+R E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L RG+ +DI SF Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-NVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WFSL+EK GAT+F+GYD Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKLGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G V+ +G+ ++ +QTPFYAE+GGQ+GDTG DG+ Sbjct: 462 -----TETAEGVVTALVKDGAEVDALKAGESGAIIVNQTPFYAESGGQVGDTGVLTADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +TD KKA +FVH VE+G ++ +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFVVTDTMKKAGDLFVHFGTVEQGSIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPIT EL+ +ED NDI+ +N VVTR+M +DA Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ D G + S LCGGTHV TG+I L+ I E Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAARDHGSNVFGWSVELCGGTHVKRTGDIGLVSITGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S++ AG+RRIEA+TG+ AR + K AS L+ + ++ R+ + +E +KL + Sbjct: 697 SAVAAGVRRIEALTGRAARHNANAAISTAKLAASELRTTLDDMPARITALMDERKKLERE 756 Query: 772 LIHAKRKLQLNVE---DLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 L A++KL + D + + D + M+ + ++ K+LK ++D +K++ SG+I Sbjct: 757 LSEARKKLAMGGSASGDGAASDVRDIGGIKLMARAVEGIEIKDLKGLVDQGKKQLGSGVI 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 LV S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K Sbjct: 817 ALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 875 >gi|39936908|ref|NP_949184.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris CGA009] gi|48428511|sp|P61706|SYA_RHOPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|39650765|emb|CAE29288.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris CGA009] Length = 889 Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/899 (51%), Positives = 614/899 (68%), Gaps = 39/899 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK YQ Sbjct: 1 MSGVNEIRSTFLNYFAKNGHEIVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEKRSYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKERAI+LAW+L+T++F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKERAIELAWNLITRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA WKKI+G S D+IIRI T+DNFW+M +TGPCGPCSEIF D+G Sbjct: 121 KKDKLLVTVYHTDDEAAGYWKKIAGFSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFIDRG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS E+G+R++E WNLVFMQ++Q K ER LP+ SIDTGMGLERMA++LQ Sbjct: 181 EHIFGGPPGSPDEDGDRFLEFWNLVFMQYDQVTKDERVPLPRPSIDTGMGLERMASILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D DLF+ LI A+ G + + RVI DHLRSSSFLIADG+LP+NEGRGY Sbjct: 241 VDSVFDTDLFRSLIDATSSALGRGPTEQDAASFRVIADHLRSSSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +EPLM L+ AL EMG AYPEL++A+ +IEET+R E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGASEPLMWRLVWALVREMGQAYPELVRAEAMIEETMRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL +LD + L K ++ +G+ AF LYDT+G PLD+ QD L RG+ +DI SF Sbjct: 361 KTLDRGLAILDEKSAGLKKGDMFDGETAFTLYDTYGFPLDLTQDALRNRGI-NVDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR++ARA G G TE +WFSL+EK GAT+F+GYD Sbjct: 420 DAMDRQRAKARASWAGSGEAATEAVWFSLREKLGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V A+V+ G V+ +G+ ++ +QTPFYAE+GGQ+GDTG DG+ Sbjct: 462 -----TETAEGVVTALVKDGAEVDALKAGESGAIIVNQTPFYAESGGQVGDTGVLTADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +TD KKA +FVH VE+G ++ +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFVVTDTMKKAGDLFVHFGTVEQGSIKLGDALALDVDHARRSAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPIT EL+ +ED NDI+ +N VVTR+M +DA Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFVHQKPITQDELRKVEDIANDIVLENDEVVTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVVS+ D G + S LCGGTHV TG+I L+ I E Sbjct: 637 REAGARALFGEKYGDEVRVVSMGKAARDHGSNVFGWSVELCGGTHVKRTGDIGLVSITGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S++ AG+RRIEA+TG+ AR + K AS L+ + ++ R+ + +E +KL + Sbjct: 697 SAVAAGVRRIEALTGRAARHNANAAISTAKLAASELRTTLDDMPARITALMDERKKLERE 756 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 L A++KL + + I + M+ + ++ K+LK ++D +K++ SG+I Sbjct: 757 LSEARKKLAMGGSAAGDGAASDVRDIGGIKLMARAVEGIEIKDLKGLVDQGKKQLGSGVI 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 LV S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G+K Sbjct: 817 ALVATSEDGKGSIVVGVTPDLVSRFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGSK 875 >gi|220925350|ref|YP_002500652.1| alanyl-tRNA synthetase [Methylobacterium nodulans ORS 2060] gi|219949957|gb|ACL60349.1| alanyl-tRNA synthetase [Methylobacterium nodulans ORS 2060] Length = 886 Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/893 (51%), Positives = 616/893 (68%), Gaps = 35/893 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK +YQ Sbjct: 1 MSGVNEIRSTFLDYFAKHGHEIVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRLYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW+L+TKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWNLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY EDE+A LW+KI+G S D+IIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 DKDRLLVTVYAEDEDAATLWRKIAGFSDDRIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLER+A +LQ Sbjct: 181 PELWGGPPGSPDEDGDRFLEFWNLVFMQYEQIEPGNRVDLPRPSIDTGMGLERIAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A G EG ++RVI DHLR+SSFL+ADG+LP NEGRGY Sbjct: 241 VKSNYDTDLFRSLIDAVAHQVGRAPEGPQTASYRVIADHLRASSFLVADGVLPGNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +P+M L+P L EMG AYPEL +A+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGARDPMMYRLVPTLVREMGQAYPELERAEALITETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L +RG+ G+D SF Sbjct: 361 RTLERGLSILDAETRDLSAGQKLSGETAFTLYDTYGFPLDLTQDALKSRGI-GVDTESFK 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ ARA G G TE +WFSL+E+ GAT+F+GY+ Sbjct: 420 AAMERQRAAARAAWAGSGEAATETLWFSLRERVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +V A+V+ G VE +G++ +V QTPFY E+GGQ+GDTG G+ Sbjct: 462 -----AETAEGVVTALVKGGAEVEAIGAGEEGLLVVSQTPFYGESGGQVGDTGTVTAPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R+++TD +KK +FVHH +VE G L T ++ L +D++ R + +HSATHLLH AL Sbjct: 517 RVRVTDTEKKLGDLFVHHVMVEEGRLATGQAIELQVDHERRAAIRAHHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS ++P+ LRFD +H KP+ E+ ++ED N ++ QN PVVT++M +DA Sbjct: 577 VLGDHVAQKGSLVSPERLRFDFSHPKPMNDDEVAAVEDMANRVLLQNGPVVTKLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE---DG--GVHSSALCGGTHVSSTGEIMLLYIVSES 714 IA+GA AL G KY D VRVVS+ E DG S LCGGTHV+ TGEI ++ +V ES Sbjct: 637 IATGARALFGEKYGDEVRVVSMGEESSADGRPKAFSVELCGGTHVARTGEIGVITVVGES 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ +G+RRIEA+TG AR HL + +L ++A LKV R+ + E+ R+L +L Sbjct: 697 AVASGVRRIEAMTGDAARRHLAEESRRLAAMAGLLKVPPAEAPERLAALIEDRRRLEREL 756 Query: 773 IHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+RKL + + + ++ V M+ + V+ ++LKS+ D +K++ SGI+ +VG Sbjct: 757 AEARRKLAMGGGSAGEDPVREVGGVKLMARAVQGVEMRDLKSLADEGKKRLGSGIVAIVG 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 ++++ KA +++ VT+DL DRF+AV L R ++ LGG GGGGR MAQ+GGP+G Sbjct: 817 VAQDGKAGLVVGVTDDLTDRFDAVALVRAGSERLGGKGGGGRRDMAQAGGPDG 869 >gi|323137975|ref|ZP_08073049.1| alanyl-tRNA synthetase [Methylocystis sp. ATCC 49242] gi|322396694|gb|EFX99221.1| alanyl-tRNA synthetase [Methylocystis sp. ATCC 49242] Length = 889 Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/908 (49%), Positives = 604/908 (66%), Gaps = 35/908 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL++F +NGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK Sbjct: 1 MSGVNQIRSAFLDYFVRNGHEKVASSPLVPHNDPTLMFTNAGMVQFKNVFTGVEKRHQAR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAW L+TKEF L Sbjct: 61 AASAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEGAIELAWGLITKEFSL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +D+EAF LWKKI+G +IIRI ++DNFWSM +TGPCGPCSEIF+DQG Sbjct: 121 PVEKLLVTVYHDDDEAFDLWKKIAGFHDSRIIRIASSDNFWSMGDTGPCGPCSEIFYDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQ+EQ +R LP+ SIDTGMGLER+A ++Q Sbjct: 181 ETLTGGPPGSPGEDGDRFLEFWNLVFMQYEQVAPGQRAPLPRPSIDTGMGLERIAALMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 T+NY+IDLF+ L A + TG G +HRVI DHLR+SSFL+ADG+ P+NEGRGY Sbjct: 241 VTSNYEIDLFRSLTGAVAEYTGAPVGGPQGASHRVIADHLRASSFLVADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A++LG EPLM L+P L EMG AYPEL++A+ LI +TL++E+ RF Sbjct: 301 VLRRIMRRAMRHAQILGAQEPLMWRLVPTLVAEMGQAYPELVRAQALIVDTLKTEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RGL +LD ++LG+ + L+G+ AFKLYDT+G PLD+ +D L RG+ G+D +FN Sbjct: 361 ATLARGLAILDDETANLGRGDKLSGETAFKLYDTYGFPLDLTEDALRPRGV-GVDKEAFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ AR G G TE +WF+LKE+ G T+F+GY+ Sbjct: 420 AAMERQRAEARKAWAGSGETATETLWFALKERLGTTEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +V AIV G G + V+ +QTPFY E+GGQ+GD G G + Sbjct: 462 -----TEKSEGVVSAIVHDGAEAFVLKQGARGAVILNQTPFYGESGGQVGDVGVMRGRNV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++ + QKK + VH +VE G + + L L +D++ RR NHSATH+LH AL Sbjct: 517 RFRVENTQKKLGDLIVHEGVVEEGEIVPGVVLELDVDHERRRATRANHSATHILHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD TH KP+T EL +E N+I+ N PV TR+M ++DA Sbjct: 577 VLGDHVAQKGSLVAPERLRFDFTHPKPLTEEELARVEALANEIVQDNAPVDTRLMAQDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSI 716 I SGA AL G KY D VRVVS+ D GV S LCGGTHVS TG+I L+ IV E ++ Sbjct: 637 IRSGARALFGEKYGDEVRVVSMGRPDPGVAHPFSVELCGGTHVSRTGDIGLISIVGEGAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 +G+RRIEA T + ARS L+ Q L+ +AS ++ R+ ++ EE ++L+ L Sbjct: 697 ASGVRRIEARTAEGARSQLVAQSRALREIASLIRAPMEEAPARLGQLLEERKRLERDLAD 756 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+RKL + +A V ++ + VD+K+LKS++D +K I SG++ Sbjct: 757 ARRKLAMGGGSGNGGGQEWRDVAGVKLLTRAVDGVDAKDLKSLVDDAKKNIGSGVVAFAC 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + KA +++ VT+DL +F+AV+ R+++ LGG GGGGRP +AQ+GGPN +QA+ Sbjct: 817 ASPDGKAGIVVGVTDDLTSKFSAVEFVRVASATLGGKGGGGRPDLAQAGGPNAAAIEQAL 876 Query: 890 AGVASFLK 897 A V L+ Sbjct: 877 ASVEDALR 884 >gi|170751975|ref|YP_001758235.1| alanyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831] gi|205830144|sp|B1M0N0|SYA_METRJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|170658497|gb|ACB27552.1| alanyl-tRNA synthetase [Methylobacterium radiotolerans JCM 2831] Length = 892 Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/914 (50%), Positives = 603/914 (65%), Gaps = 40/914 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F K GHE++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFAKAGHEVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGMEKRAYDR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW L+TKEF L Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +D+EA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 KPDKLLVTVYADDDEAAGLWKKIAGFSDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PALQGGPPGSPDEDGDRFLEFWNLVFMQYEQLEPGVRNPLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E + ++RVI DHLR+SSFL+ADG+LP NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPATMASYRVIADHLRASSFLVADGVLPGNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG EP M L+P L EMG AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAEILGAREPTMFRLVPTLVREMGQAYPELMRAESLIAETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL +LD L + + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D +F Sbjct: 361 RTLERGLSILDAESRDLREGDKLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTDAFA 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ AR G G TE +WF L+E+ GAT+F+GY+ Sbjct: 420 AAMQRQKQAAREAWKGSGEAATETVWFGLRERVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T IV A+++ G V +GQ V+ +QTPFY E+GGQ+GDTG + G+ Sbjct: 462 -----TENAEGIVTALLRDGAEVTTLAAGQTGLVLVNQTPFYGESGGQVGDTGLILAPGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD QKK +FVHH VE G L + + L +D R+ + NHSATHLLH AL Sbjct: 517 RARVTDTQKKLGDVFVHHVTVEEGTLSLDQPVELKVDNVRRKAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS ++P+ LRFD++H KPI + EL +ED N ++ QN PVVT++M +DA Sbjct: 577 VLGDHVAQKGSLVSPERLRFDISHPKPIEADELARVEDIANAVLLQNAPVVTKLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-DGGV-------HSSALCGGTHVSSTGEIMLLYIV 711 IASGA AL G KY D VRVVS+ DG S LCGGTH + TG+I + IV Sbjct: 637 IASGARALFGEKYGDEVRVVSMGLPVDGEAAQPRARNFSVELCGGTHAARTGDIGAITIV 696 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 +ES++ AG+RRIEA+T AR H + L +LA LK R+ + E+ R+L Sbjct: 697 AESAVGAGVRRIEALTADAARRHRAEEARTLAALAGILKAPVSEAPDRLTALMEDRRRLE 756 Query: 771 -QLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 +L +RKL + E +I V F +I +D ++LK ++D +K++ SGI Sbjct: 757 RELAETRRKLAMGGEGGPGSGAQQTEIGGVAFRRSVIEGLDMRDLKPIVDEEKKRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + +VGI + KA +++ VT+DL R++AV L R A LGG GGGGR MAQ+GGPNG Sbjct: 817 VAVVGIGPDGKAGLVVGVTDDLTARYDAVGLVRAGAGALGGKGGGGRRDMAQAGGPNGAG 876 Query: 885 ADQAIAGVASFLKK 898 A+ A+ VA L + Sbjct: 877 AEAALDAVAQALTE 890 >gi|115523616|ref|YP_780527.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisA53] gi|115517563|gb|ABJ05547.1| alanyl-tRNA synthetase [Rhodopseudomonas palustris BisA53] Length = 893 Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/901 (51%), Positives = 614/901 (68%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Sbjct: 3 MSGVNEIRSAFLNYFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANPR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKE+ L Sbjct: 63 AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEYGL 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ ED+EAF LWKKI+GL KIIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 123 AKDRLLVTVFSEDDEAFGLWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 182 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQF+Q R LPK SIDTGMGLER+A VLQ Sbjct: 183 DHIFGGPPGSPEEDGDRFIEIWNLVFMQFDQVAPGSRNPLPKPSIDTGMGLERIAAVLQG 242 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NY+IDLF+ LI+A +TG +G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 243 KHDNYEIDLFQALIRAIADLTGADPQGEQKASLRVIADHLRASSFLIADGVLPSNEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +LLG EPLM L+ AL EMG AYPEL++A+ LIEETLR E+ RF Sbjct: 303 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETRFR 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L + ++ +G+ AF LYDT+G PLD+ QD L ARG++ +DI SF Sbjct: 363 KTLERGLGILDEKSNTLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARGIS-VDIASFT 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR+ ARA G G E +WF L+EK GAT+F+GY+ Sbjct: 422 DAMDRQRALARASWTGSGDTAAETVWFGLREKLGATEFLGYE------------------ 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + V A+V+ G++V++ +G +V +QTPFYAE+GGQ+GDTG DG+ Sbjct: 464 -----TETAEAEVAALVKDGQVVDQLKTGDSGAIVLNQTPFYAESGGQVGDTGVLSADGV 518 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++T+ QKKA +FVH VE G ++ +L L +D+ R + NHSATHLLH AL Sbjct: 519 RFRVTETQKKAGDLFVHLGTVEEGTIKLATALALNVDHDRRGAIRANHSATHLLHEALRQ 578 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPI++ EL+ +ED N+++ +N V TR+M +DA Sbjct: 579 VLGDHIAQKGSLVAPDRLRFDFMHPKPISAEELRRVEDIANEVVLENDEVTTRLMAVDDA 638 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVV + D G + S LCGGTHV TG+I L+ + E Sbjct: 639 RDAGARALFGEKYGDEVRVVVMGKGSRDRGANALGWSVELCGGTHVKRTGDIGLISVTGE 698 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S++ +G+RRIEA+TG++AR K A+ L+ S ++ R+ + +E +KL + Sbjct: 699 SAVASGVRRIEALTGRQARQSANAAIATAKQAAAELRTSVDDMPARIAALMDERKKLERE 758 Query: 772 LIHAKRKLQLNVEDL--------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L A++KL + ++ V M+ + V+ K+LKS++D +K++ SG Sbjct: 759 LAEARKKLAMGGGGAAGAANGASDVREVGGVKLMARAVEGVEIKDLKSLVDQGKKQLGSG 818 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I L+ S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 819 VIALIATSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 878 Query: 884 K 884 K Sbjct: 879 K 879 >gi|205830250|sp|Q07R87|SYA_RHOP5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 891 Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/901 (51%), Positives = 614/901 (68%), Gaps = 41/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+ FL +F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Sbjct: 1 MSGVNEIRSAFLNYFGKNGHEIVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRANPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+LAW+L+TKE+ L Sbjct: 61 AVSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIELAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ ED+EAF LWKKI+GL KIIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 121 AKDRLLVTVFSEDDEAFGLWKKIAGLPDSKIIRIPTSDNFWQMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQF+Q R LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIFGGPPGSPEEDGDRFIEIWNLVFMQFDQVAPGSRNPLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NY+IDLF+ LI+A +TG +G + RVI DHLR+SSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYEIDLFQALIRAIADLTGADPQGEQKASLRVIADHLRASSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +LLG EPLM L+ AL EMG AYPEL++A+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHGQLLGAREPLMWRLVWALVREMGQAYPELVRAENLIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD + L + ++ +G+ AF LYDT+G PLD+ QD L ARG++ +DI SF Sbjct: 361 KTLERGLGILDEKSNTLKQGDMFDGETAFTLYDTYGFPLDLTQDALRARGIS-VDIASFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR+ ARA G G E +WF L+EK GAT+F+GY+ Sbjct: 420 DAMDRQRALARASWTGSGDTAAETVWFGLREKLGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + V A+V+ G++V++ +G +V +QTPFYAE+GGQ+GDTG DG+ Sbjct: 462 -----TETAEAEVAALVKDGQVVDQLKTGDSGAIVLNQTPFYAESGGQVGDTGVLSADGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++T+ QKKA +FVH VE G ++ +L L +D+ R + NHSATHLLH AL Sbjct: 517 RFRVTETQKKAGDLFVHLGTVEEGTIKLATALALNVDHDRRGAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + PD LRFD H KPI++ EL+ +ED N+++ +N V TR+M +DA Sbjct: 577 VLGDHIAQKGSLVAPDRLRFDFMHPKPISAEELRRVEDIANEVVLENDEVTTRLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH----SSALCGGTHVSSTGEIMLLYIVSE 713 +GA AL G KY D VRVV + D G + S LCGGTHV TG+I L+ + E Sbjct: 637 RDAGARALFGEKYGDEVRVVVMGKGSRDRGANALGWSVELCGGTHVKRTGDIGLISVTGE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S++ +G+RRIEA+TG++AR K A+ L+ S ++ R+ + +E +KL + Sbjct: 697 SAVASGVRRIEALTGRQARQSANAAIATAKQAAAELRTSVDDMPARIAALMDERKKLERE 756 Query: 772 LIHAKRKLQLNVEDL--------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L A++KL + ++ V M+ + V+ K+LKS++D +K++ SG Sbjct: 757 LAEARKKLAMGGGGAAGAANGASDVREVGGVKLMARAVEGVEIKDLKSLVDQGKKQLGSG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I L+ S++ K S+++ VT DL+ RF+AVDL R +++VLGG GGGG+P MAQ+GGP+G Sbjct: 817 VIALIATSEDGKGSIVVGVTPDLVARFSAVDLVRKASEVLGGKGGGGKPDMAQAGGPDGA 876 Query: 884 K 884 K Sbjct: 877 K 877 >gi|300023633|ref|YP_003756244.1| alanyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888] gi|299525454|gb|ADJ23923.1| alanyl-tRNA synthetase [Hyphomicrobium denitrificans ATCC 51888] Length = 897 Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/919 (50%), Positives = 631/919 (68%), Gaps = 47/919 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ VS+IR++FL++F KNGHE++PSS L+P NDPTLMFTN+GMV FKN+FTGQE Sbjct: 1 MAGVSAIRSSFLDYFAKNGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGQETRAIPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+LLTK+F L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLLTKDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +T+Y D++A+K+WKK++G S D+IIRI ++DNFW M +TGPCGPCSEIFFD G Sbjct: 121 DAKRLLVTIYHTDDDAYKIWKKVTGFSDDRIIRIASSDNFWQMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS + EG+R+IEIWNLVFMQFEQ+ +R LP+ SIDTGMGLER+A VLQ Sbjct: 181 DKIPGGPPGSPDSEGDRFIEIWNLVFMQFEQRAPGDRIDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQ---VTGMKYEGNNI------VNHRVIVDHLRSSSFLIADGI 290 K +NY+IDLF++LIQ+ Q TG K G + V RVI DHLRS+SFLIADG+ Sbjct: 241 KHDNYEIDLFENLIQSIRQEAAKTGAKETGGDASPEFLNVARRVIADHLRSTSFLIADGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRRIMRRAM YA +G +PLM L+P+L EMG AYPEL++A+ LI ET Sbjct: 301 LPSNEGRGYVLRRIMRRAMRYAHQMGCHDPLMHLLVPSLVREMGDAYPELVRAQPLITET 360 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L+ E+ +F +TLD GL LL + + K + GDVAFKLYDT G PLD+ +D L RG+ Sbjct: 361 LKLEETKFKRTLDNGLKLLGESSASIKKGAVFPGDVAFKLYDTFGFPLDLTEDALKPRGI 420 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 + +D +F+ A+++Q+ A+A G G TE +WF +K+K GA++F+GYD Sbjct: 421 S-VDTNAFDAAMKKQKDAAKAAWKGSGEAATEGLWFEIKDKVGASEFLGYD--------- 470 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 T IV A+V G+ + +G + ++ +QTPFY E+GGQ+GD Sbjct: 471 --------------TETAEGIVAALVANGKDADTLKAGDEGALILNQTPFYGESGGQVGD 516 Query: 531 TGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G G G ++TD QKK +FVH VE G ++ + +D+ R NHSA Sbjct: 517 QGVIKGAKGALFRVTDTQKKLGDLFVHFGKVEAGSFTAGDAVEIEVDHARRTATRANHSA 576 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG+HV+Q GS ++PD LRFD +H+KP+++ E+K++ED N ++ +N PV Sbjct: 577 THLLHEALRQVLGTHVAQKGSLVSPDRLRFDFSHTKPMSAEEIKAVEDMANAVLLENTPV 636 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH---SSALCGGTHVSSTGEIM 706 VTR+M ++A ASGA AL G KY D VRVVS+ G + S LCGGTHV+ TG+I Sbjct: 637 VTRLMALDEARASGAMALFGEKYGDEVRVVSMGSTRPGANKAWSVELCGGTHVTRTGDIG 696 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L+ +V+ES AG+RRIEA+TG+ AR++L QD +++ AS LK +++ R++ + EE Sbjct: 697 LVRVVAESGSAAGVRRIEALTGEGARAYLDEQDARVREAASVLKTRPEDLIERLKHLVEE 756 Query: 767 YRKL--QLIHAKRKLQL--NVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + L QL AKRKL L V S I +V ++ + ++ K+L+ ++D + Sbjct: 757 RKVLEKQLADAKRKLALGGGVNGASDGADAIRSIGNVKLLARTVQGLNPKDLRGLIDDGK 816 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K++ SGI+ +VG++++ KA + + VTEDL+ ++AVDL + A+ LGG GGGGRP MAQ+ Sbjct: 817 KQVGSGIVAIVGVTEDGKAGLAVGVTEDLVKSWSAVDLVKAGAEALGGKGGGGRPDMAQA 876 Query: 878 GGPNGNKADQAIAGVASFL 896 GGP+G KA A+ + + L Sbjct: 877 GGPDGAKAGDALKAIEARL 895 >gi|170743900|ref|YP_001772555.1| alanyl-tRNA synthetase [Methylobacterium sp. 4-46] gi|205830146|sp|B0UGC4|SYA_METS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|168198174|gb|ACA20121.1| alanyl-tRNA synthetase [Methylobacterium sp. 4-46] Length = 886 Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/893 (50%), Positives = 607/893 (67%), Gaps = 35/893 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F K+GHE++PSS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFAKHGHEVVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW+L+TKEF L Sbjct: 61 AATAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPLAIELAWNLVTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY +D++A LW+KI+G ++IIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 DRSKLLVTVYADDDDAATLWRKIAGFPEERIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS EE G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PELWGGPPGSPEEDGDRFLEFWNLVFMQYEQIEPGNRVGLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A G EG ++RVI DHLR++SFL+ADG+LP NEGRGY Sbjct: 241 VKSNYDTDLFRSLIDAVAHQVGRPPEGAQTASYRVIADHLRAASFLVADGVLPGNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +P+M L+P L EMG AYPEL++A+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGARDPMMYRLVPTLVREMGQAYPELVRAESLISETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL +LD L + + L+G+ AF LYDT+G PLD+ QD L +RG+ G+D +F Sbjct: 361 RTLERGLSILDAETRDLSEGQNLSGETAFTLYDTYGFPLDLTQDALKSRGI-GVDTDAFK 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ ARA G G TE +W++L+E+ GAT+F+GY+ Sbjct: 420 AAMERQRAAARAAWAGSGEAATETLWYALRERVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +V A+V+ G VE SG++ +V QTPFY E+GGQ+GDTG G+ Sbjct: 462 -----AETAEGVVTALVRGGVEVEALASGEEGLLVVSQTPFYGESGGQVGDTGTVAAAGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++TD +KK +FVHH VE G L ++ L +D+ R + +HSATHLLH AL Sbjct: 517 RARVTDTEKKLGDLFVHHVAVEEGRLTVGQAVELRVDHARRAAIRAHHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS ++P+ LRFD +H KP+ E+ ++E+ N ++ QN PVVT++M +DA Sbjct: 577 VLGDHVAQKGSLVSPERLRFDFSHPKPMNDDEVAAVEEMANRVLLQNGPVVTKLMAVDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-----VHSSALCGGTHVSSTGEIMLLYIVSES 714 IA+GA AL G KY D VRVVS+ + GG S LCGGTHV TGEI L+ +V E Sbjct: 637 IATGARALFGEKYGDEVRVVSMGEDQGGDGRRRTFSVELCGGTHVGRTGEIGLITVVGEG 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ +G+RRIEA+TG AR HL + +L ++A LKV R+ + E+ R+L +L Sbjct: 697 AVASGVRRIEAMTGDAARRHLAEESRRLAAVAGLLKVPPAEAADRLAALIEDRRRLEREL 756 Query: 773 IHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+RKL + + ++A V M+ + V+ ++LKS+ D +K++ SG++ +VG Sbjct: 757 SEARRKLAMGGGGAGEEPVREVAGVKLMARSVEGVEMRDLKSLADEGKKRLGSGVVAIVG 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 ++ + KA +++ VT+DL DRF+AV L R ++ LGG GGGGR MAQ+GGP+G Sbjct: 817 VAPDGKAGLVVGVTDDLTDRFDAVALVRAGSERLGGKGGGGRRDMAQAGGPDG 869 >gi|16126768|ref|NP_421332.1| alanyl-tRNA synthetase [Caulobacter crescentus CB15] gi|221235548|ref|YP_002517985.1| alanyl-tRNA synthetase [Caulobacter crescentus NA1000] gi|20532261|sp|Q9A5C1|SYA_CAUCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|13424088|gb|AAK24500.1| alanyl-tRNA synthetase [Caulobacter crescentus CB15] gi|220964721|gb|ACL96077.1| alanyl-tRNA synthetase [Caulobacter crescentus NA1000] Length = 880 Score = 884 bits (2283), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/904 (50%), Positives = 595/904 (65%), Gaps = 34/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F K H + PS+ L+P NDPTL+F N+GMVPFKN+FTG E P + Sbjct: 1 MPSLNEIRSTFLDYFGKADHAVTPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPAHPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT EF L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAILHAWTLLTAEFKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA LWKKI+GL D+IIRI T+DNFWSM +TGPCGPCSEIFFD G Sbjct: 121 PKDKLLVTVYHTDDEAADLWKKIAGLGDDRIIRIPTSDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS +E G+R+IEIWNLVFMQFEQ ER LPK SIDTGMGLER+A VLQ Sbjct: 181 PHIAGGPPGSPDEDGDRFIEIWNLVFMQFEQLAGGERISLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDLFK LI AS ++TG+K EG +HRVI DHLRSSSFL+ADG+ P+NEGRGY Sbjct: 241 QHDNYDIDLFKALIAASVELTGVKAEGAQAPSHRVIADHLRSSSFLLADGVSPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +EPLM L P L EMG AYPEL +A+ LI ETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAYLLGASEPLMHRLAPTLVREMGQAYPELRRAEALIVETLRQEEERFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ LLD ++L +L+G+ AFKLYDT+G PLD+ QD + A+GL +D +F+ Sbjct: 361 TTLGRGMGLLDEATANLAAGGVLDGETAFKLYDTYGFPLDLTQDAVRAKGLT-VDTDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+++QR ARA+ G G WFS+KEK GAT F+GY+ Sbjct: 420 AAMQKQREMARANWAGSGQQGAAAAWFSIKEKAGATDFVGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + +VKAIV G VE A +GQ VEV+ D+T FYAE+GGQ GDTG G Sbjct: 462 -----TTETTGVVKAIVVDGAEVESASAGQTVEVLLDRTSFYAESGGQAGDTGVIEAHGR 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK+A + VH + L+ +V ++D R NHSA HL+H AL Sbjct: 517 ESRVLDTQKQAGELHVHRVELASD-LKVGDQVVASVDADRRNTTRSNHSAAHLVHAALHH 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + + +RFD +H P+T+ EL IE VN++I QN+P T+ M ++A Sbjct: 576 VLGPHVAQKGQMVDGERMRFDFSHGGPLTAEELDRIEAEVNEVIRQNVPAETKEMAPQEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 I +GA AL G KY D VRV+++ ++ +S LCGGTHV+ TG+I L IVSE + Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGKSLADEAKAYSVELCGGTHVARTGDIALFKIVSEQGV 695 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG+ AR L+ Q K+LA K V RV+ + + ++L+ A+ Sbjct: 696 AAGVRRIEALTGEAARRFLLDQAGVAKALADQFKTPVAEVATRVDALIADRKRLEKELAE 755 Query: 777 RKLQLNVEDLSCHKIA-DVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + DVN ++ ++ V KEL+ V + +K++ SG++ LVG S Sbjct: 756 AKKQLALGGGGAASGPEDVNGTALIARVLDGVGGKELRGVAEEFKKQLASGVVALVGTS- 814 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + KA+V + VT DL +F+A DLA+ + +GG G GG+ AQ G P+ +KA++ +A V Sbjct: 815 DGKAAVTVAVTADLTGKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDDSKAEEGLAAV 874 Query: 893 ASFL 896 + L Sbjct: 875 KALL 878 >gi|158424478|ref|YP_001525770.1| alanyl-tRNA synthetase [Azorhizobium caulinodans ORS 571] gi|205829980|sp|A8ICW8|SYA_AZOC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|158331367|dbj|BAF88852.1| alanyl-tRNA synthetase [Azorhizobium caulinodans ORS 571] Length = 881 Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/890 (50%), Positives = 602/890 (67%), Gaps = 33/890 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR++F+++F KNGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSSFIDYFVKNGHEAVASSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+TKE+DL Sbjct: 61 AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLITKEWDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL TVY +D+ A+ LWKK++GL +IIRI T+DNFW+M +TGPCGPCSEIFFD G Sbjct: 121 PKDRLLATVYYDDDVAYDLWKKVAGLPDSRIIRIPTSDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E+G+R+IEIWNLVFMQ+EQ ER LP+ SIDTGMGLER++ +LQ Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQYEQL-PGERLNLPRPSIDTGMGLERISALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DL + +I +++T + G +HRVI DHLRSS FL+ADG+LP+NEGRGY Sbjct: 240 THDNYETDLMRAIIAEVQELTNVPSNGPQKASHRVIADHLRSSVFLVADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+P L EMG AYPE+++A+ L ETL E+ RF Sbjct: 300 VLRRIMRRAMRHAQLLGAREPLMHRLVPVLVREMGRAYPEIVRAEALATETLLLEETRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ + L G+VAFKLYDT+G PLD+ +D L RG+ ++ +F+ Sbjct: 360 RTLERGLSLLEEESAGLVSGARFPGEVAFKLYDTYGFPLDLTEDALRGRGIE-VEREAFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q++ ARA+ G G T+ +WF ++E+ GAT+F+GYD Sbjct: 419 AAMERQKAEARANWSGSGEAATDTVWFGVREREGATEFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V+A+VQ+G+ V E +G + VV +QTPFY E+GGQ+GD+G G+G+ Sbjct: 461 -----TETAEGAVRALVQEGKEVSELPAGARGFVVLNQTPFYGESGGQVGDSGLVSGEGV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + + QKK +FVH V G L+ L L +D+ R + NHSATHLLH AL Sbjct: 516 KACVLNTQKKLGDVFVHDVEVTEGTLKIGTPLALEVDHARRSAVRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + PD LRFD +H KP+T+ EL +ED N + +N PV TR+M +DA Sbjct: 576 VLGDHVAQKGSLVAPDRLRFDFSHPKPLTADELAQVEDIANTYVLRNEPVETRLMAVDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE--DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +ASGA AL G KY D VRVVS+ + +G S LCGGTHV TG+I ++ ++++S + Sbjct: 636 VASGARALFGEKYGDEVRVVSMGTDSGNGAPFSVELCGGTHVKRTGDIGIVTVLADSGVA 695 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHA 775 AG+RR+EA+T AR HL L++ A LKVS V RV + EE RKL+ L A Sbjct: 696 AGVRRLEALTATAARRHLNAASTALQTTAGTLKVSTAEVEARVAALVEERRKLERDLAEA 755 Query: 776 KRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 ++KL + S + +VN ++ IS D K+LK+++D + KI SG++ + + Sbjct: 756 RKKLAMGGGGESGPAVIEVNGTRYLRIAISGADPKDLKAIVDEGKTKIGSGVVAVANTAA 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + K ++++ VT DL +F+A L R+ +VLGG GGGGRP MAQ GGP+G Sbjct: 816 DGKGALVVGVTADLAGKFDAQKLVRIGVEVLGGKGGGGRPDMAQGGGPDG 865 >gi|154253021|ref|YP_001413845.1| alanyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1] gi|154156971|gb|ABS64188.1| alanyl-tRNA synthetase [Parvibaculum lavamentivorans DS-1] Length = 913 Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/907 (49%), Positives = 607/907 (66%), Gaps = 37/907 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+ +LEFF+ GHE++ S L+P NDPTL+FTN+GMVPFKN+FTGQE Y+ Sbjct: 22 MAGVNEIRSKYLEFFRAQGHEVVASGPLVPNNDPTLLFTNAGMVPFKNVFTGQETRPYKR 81 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG Y+K AI+ AWDL+TKE L Sbjct: 82 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYYKAEAIEFAWDLITKELAL 141 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +T+Y++D+EA LWKKI+GLS DKI+R+ NFW M +TGPCGP SEIF+D G Sbjct: 142 PESRLMVTIYEDDDEAHGLWKKITGLSDDKIVRLGAKSNFWQMGDTGPCGPNSEIFYDHG 201 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E+G+R+IEIWNLVFMQ+EQ R LPK SIDTGMGLER+A VLQ Sbjct: 202 DKIPGGPPGSPDEDGDRFIEIWNLVFMQYEQHEDGSRTRLPKPSIDTGMGLERIAAVLQG 261 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI AS + + +G + V+HRVI DHLRSSSFL+ADG++P+NEGRGY Sbjct: 262 THDNYSTDLMRSLIVASAEASKSDPDGPHAVSHRVIADHLRSSSFLLADGVMPSNEGRGY 321 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+L+G EPLM L+PAL +MG AYPEL +A+ L+ ETLR E+ RF Sbjct: 322 VLRRIMRRAMRHAQLVGVAEPLMWRLVPALVRQMGDAYPELRRAEALVTETLRLEETRFR 381 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL LLD + LG +L G+VAFKLYDT+G PLD+ QD L +RG++ +D F+ Sbjct: 382 ETLTRGLKLLDEEIESLGGKGVLAGEVAFKLYDTYGFPLDLTQDALRSRGMS-VDQTGFD 440 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ +QR ARA G G TE +WF L++K GAT+F+GY+ Sbjct: 441 EAMAKQRQDARAAWSGSGEKATEAVWFELRDKVGATEFLGYE------------------ 482 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538 + V A++ G+ V++ +G ++ +QTPFYAE+GGQ+GDTG DG Sbjct: 483 -----SEIAEGKVVALLVDGQPVDKVEAGTDAALITNQTPFYAESGGQVGDTGIVFSADG 537 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + D KK + VH + RG L+ + + +D R NHSATHLLH AL Sbjct: 538 AEFPVIDTMKKLGALHVHIGKLARGTLKLGDIVEMKVDKSLRDATRANHSATHLLHEALR 597 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + P+ LRFD +H KP+T E+ +E VN +I QN V TR+M ED Sbjct: 598 RVLGDHVTQKGSMVGPERLRFDFSHPKPMTPEEISEVETIVNRVIRQNAEVTTRLMTPED 657 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 AIA+GA AL G KY + VRV+++ +D G +S LCGGTHV G+I + IVSES+ Sbjct: 658 AIAAGALALFGEKYGEEVRVLAMGLDDENPNGTYSVELCGGTHVRRVGDIAIFKIVSESA 717 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + +GIRRIEA+TG+ AR++L+ QD K AS L++S ++ RV + EE ++L +L Sbjct: 718 VASGIRRIEALTGEGARAYLVAQDRIAKEAASALRISTEDLPARVVSLMEERKRLERELA 777 Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 AK++L + ++ + V ++ + V+ K+L+ ++D +K++ SG+++L Sbjct: 778 QAKKQLAMSGGGGSGGQESPVQEFGGVKLIARKLEGVNPKDLRGLIDESKKQLGSGVVVL 837 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 V IS++ K ++ + VT+DL R+NAV+L + A +GG GGGGRP MAQ+GGP KAD Sbjct: 838 VAISEDGKGAIAVGVTDDLTSRYNAVELVKAGAAAMGGKGGGGRPDMAQAGGPEAEKADA 897 Query: 888 AIAGVAS 894 A+ V + Sbjct: 898 ALDAVKA 904 >gi|205830263|sp|A7HWA5|SYA_PARL1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 892 Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/907 (49%), Positives = 607/907 (66%), Gaps = 37/907 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR+ +LEFF+ GHE++ S L+P NDPTL+FTN+GMVPFKN+FTGQE Y+ Sbjct: 1 MAGVNEIRSKYLEFFRAQGHEVVASGPLVPNNDPTLLFTNAGMVPFKNVFTGQETRPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG Y+K AI+ AWDL+TKE L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYYKAEAIEFAWDLITKELAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +T+Y++D+EA LWKKI+GLS DKI+R+ NFW M +TGPCGP SEIF+D G Sbjct: 121 PESRLMVTIYEDDDEAHGLWKKITGLSDDKIVRLGAKSNFWQMGDTGPCGPNSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E+G+R+IEIWNLVFMQ+EQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 DKIPGGPPGSPDEDGDRFIEIWNLVFMQYEQHEDGSRTRLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI AS + + +G + V+HRVI DHLRSSSFL+ADG++P+NEGRGY Sbjct: 241 THDNYSTDLMRSLIVASAEASKSDPDGPHAVSHRVIADHLRSSSFLLADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+L+G EPLM L+PAL +MG AYPEL +A+ L+ ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAQLVGVAEPLMWRLVPALVRQMGDAYPELRRAEALVTETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL LLD + LG +L G+VAFKLYDT+G PLD+ QD L +RG++ +D F+ Sbjct: 361 ETLTRGLKLLDEEIESLGGKGVLAGEVAFKLYDTYGFPLDLTQDALRSRGMS-VDQTGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ +QR ARA G G TE +WF L++K GAT+F+GY+ Sbjct: 420 EAMAKQRQDARAAWSGSGEKATEAVWFELRDKVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538 + V A++ G+ V++ +G ++ +QTPFYAE+GGQ+GDTG DG Sbjct: 462 -----SEIAEGKVVALLVDGQPVDKVEAGTDAALITNQTPFYAESGGQVGDTGIVFSADG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + D KK + VH + RG L+ + + +D R NHSATHLLH AL Sbjct: 517 AEFPVIDTMKKLGALHVHIGKLARGTLKLGDIVEMKVDKSLRDATRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + P+ LRFD +H KP+T E+ +E VN +I QN V TR+M ED Sbjct: 577 RVLGDHVTQKGSMVGPERLRFDFSHPKPMTPEEISEVETIVNRVIRQNAEVTTRLMTPED 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED---GGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 AIA+GA AL G KY + VRV+++ +D G +S LCGGTHV G+I + IVSES+ Sbjct: 637 AIAAGALALFGEKYGEEVRVLAMGLDDENPNGTYSVELCGGTHVRRVGDIAIFKIVSESA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + +GIRRIEA+TG+ AR++L+ QD K AS L++S ++ RV + EE ++L +L Sbjct: 697 VASGIRRIEALTGEGARAYLVAQDRIAKEAASALRISTEDLPARVVSLMEERKRLERELA 756 Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 AK++L + ++ + V ++ + V+ K+L+ ++D +K++ SG+++L Sbjct: 757 QAKKQLAMSGGGGSGGQESPVQEFGGVKLIARKLEGVNPKDLRGLIDESKKQLGSGVVVL 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 V IS++ K ++ + VT+DL R+NAV+L + A +GG GGGGRP MAQ+GGP KAD Sbjct: 817 VAISEDGKGAIAVGVTDDLTSRYNAVELVKAGAAAMGGKGGGGRPDMAQAGGPEAEKADA 876 Query: 888 AIAGVAS 894 A+ V + Sbjct: 877 ALDAVKA 883 >gi|312115730|ref|YP_004013326.1| alanyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100] gi|311220859|gb|ADP72227.1| alanyl-tRNA synthetase [Rhodomicrobium vannielii ATCC 17100] Length = 894 Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/911 (50%), Positives = 624/911 (68%), Gaps = 39/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS ++ IR TF++FF+KNGHE +PSS L+P NDPTLMFTN+GMV FKN+FTG E Y+ Sbjct: 1 MSTLNEIRGTFIDFFRKNGHEHVPSSPLVPRNDPTLMFTNAGMVQFKNVFTGMETLPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI+LAW L+TKE+ L Sbjct: 61 AVTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAIELAWTLVTKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D++RL +TV+ ED++A LWKKI+GL D+IIRI T+DNFWSM ETGPCGPCSEIFFD G Sbjct: 121 DKKRLLVTVFSEDDDAHALWKKIAGLPDDRIIRIPTSDNFWSMGETGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 +PGG PGS + +G+R+IEIWNLVFMQ+EQ +K ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 PKVPGGPPGSEDADGDRFIEIWNLVFMQYEQVSKTERLDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD DLF+ LI+AS TG+ EG + +HRVI DHLR+S+FLIADG+LP+NEGRGY Sbjct: 241 VHNNYDTDLFQALIRASVDATGVPAEGAALPSHRVIADHLRASAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM ++ LLG EPL+ LLP L EMG AYPEL++ + LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHSHLLGAEEPLLYRLLPVLVREMGQAYPELVRGQALIGETLKIEEVRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL LLD LG + +GDVAFKLYDT+G PLD+ QD L AR ++ +DI FN Sbjct: 361 RTLARGLSLLDDASGSLGAGDTFSGDVAFKLYDTYGFPLDLTQDALKARSIS-VDIKQFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q++ AR G G T+K+WF + ++ GAT+F+GY+ Sbjct: 420 AAMAQQKAEARKAWAGSGEAATDKVWFDVLDQAGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538 T + AIV+ G+ V++ +G++ ++ +QTPFY E+GGQ+GD G I Sbjct: 462 -----TEAAEGQIVAIVKDGKPVKQLKTGEEGILILNQTPFYGESGGQVGDRGVIIAPKS 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++ QKK +F H V++G L+ ++ + +D+ R + NHSATHLLH AL Sbjct: 517 AHFDVSETQKKLGKLFAHVGTVKKGPLKVGDAVEMQVDHARRTAIRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + PD LRFD +H KP++ EL ++E+ N ++ ++ PVVTR+M +D Sbjct: 577 ETLGTHVTQKGSLVDPDKLRFDFSHPKPLSKEELAAVEELANAVVLRDSPVVTRLMAVDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSV---EYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSE 713 A+A+GA AL G KY + VRVVS+ +++ G S LCGGTHV +TGEI L+ +V E Sbjct: 637 AVAAGAMALFGEKYGEEVRVVSMGEANHDERGSRAFSVELCGGTHVRATGEIGLVKVVQE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 +++ AG+RRIEA+T AR HL Q+ L+ A L+V+ V R++ + +E +KL + Sbjct: 697 TAVAAGVRRIEALTANAARLHLSHQEAALRQAAELLRVAPSEVPARLQNLIDERKKLERE 756 Query: 772 LIHAKRKLQLNV------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 L AK+K+ L + ++ DV + + + K+L+S++D +++I SGI+ Sbjct: 757 LADAKKKIALGTGGDQAGAENPVRQVGDVTMFARTVQGIQPKDLRSLVDDGKRQIGSGIV 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +VG++ + KA +++ VT DL ++AVDL + A +GG GGGGRP +AQ+GGPNG A Sbjct: 817 AIVGVTDDGKAGIVVGVTGDLTKHYSAVDLVKAGAAAVGGQGGGGRPDLAQAGGPNGANA 876 Query: 886 DQAIAGVASFL 896 + A+ +A L Sbjct: 877 EAALNAIAECL 887 >gi|295688603|ref|YP_003592296.1| alanyl-tRNA synthetase [Caulobacter segnis ATCC 21756] gi|295430506|gb|ADG09678.1| alanyl-tRNA synthetase [Caulobacter segnis ATCC 21756] Length = 880 Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/904 (50%), Positives = 593/904 (65%), Gaps = 34/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F K H ++PS+ L+P NDPTL+F N+GMVPFKN+FTG E P + Sbjct: 1 MPSLNEIRSTFLDYFGKADHAVVPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPAHPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT EF L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHHAWTLLTGEFKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA LWKKI+GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PKEKLLVTVYHTDDEAADLWKKIAGLSDDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R+IEIWNLVFMQFEQ +R LPK SIDTGMGLER+A VLQ Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQFEQLAGGDRVSLPKPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD+DLFK LI AS ++TG+K EG+ +HRVI DHLRSSSFL+ADG+ P+NEGRGY Sbjct: 241 VHNNYDVDLFKALIAASVELTGVKAEGDQAPSHRVIADHLRSSSFLLADGVSPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L P L EMG AYPEL +A+ I ETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAYLLGAQEPLMHRLAPTLVAEMGQAYPELRRAEASIVETLRQEEERFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ LLD ++L +L+G+ AFKLYDT+G PLD+ QD + A+GL +D F+ Sbjct: 361 TTLGRGMGLLDEATANLSAGGVLDGETAFKLYDTYGFPLDLTQDAVRAKGLT-VDTDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+++QR ARA+ G G WF++KEK GAT F+GY+ Sbjct: 420 AAMQKQREMARANWAGSGQQGAAAAWFAIKEKNGATDFVGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + +V+AIV G V+ A G VEV+ D+T FYAE+GGQ GD G +G Sbjct: 462 -----TTETTGVVQAIVVDGAEVQSATGGTTVEVLLDRTSFYAESGGQAGDQGALEANGR 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK+A + VH + G L+ +V+++D R+ NHSA HL+H AL Sbjct: 517 ENRVIDTQKQAGELHVHRVELS-GELKVGDKVVVSVDADRRQTTRSNHSAAHLVHAALHH 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + + +RFD +H P+T EL IE VN +I QN+P T+ M ++A Sbjct: 576 VLGPHVAQKGQMVDGERMRFDFSHGGPLTPEELDKIEAEVNAVIRQNVPAETKEMAPQEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 I +GA AL G KY D VRV+++ ++ +S LCGGTHVS TG+I L IVSE + Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGKSLTDESKAYSVELCGGTHVSRTGDIALFKIVSEQGV 695 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG+ AR L+ Q KSLA K V RV+ + + ++L+ A+ Sbjct: 696 AAGVRRIEALTGEAARRFLLDQAGVAKSLADQFKTPVAEVAQRVDALIADRKRLEKELAE 755 Query: 777 RKLQLNVEDLSCHKIA-DVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + DVN ++ ++ V KEL+ V + +K++ SG++ LVG S Sbjct: 756 AKKQLALGGGGAASGPEDVNGVALIARVLDGVGGKELRGVAEEFKKQLTSGVVALVGTS- 814 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + KA+V + VT DL +F+A DLA+ + +GG G GG+ AQ G P+ +KAD+ +A V Sbjct: 815 DGKAAVTVAVTADLTGKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDDSKADEGLAAV 874 Query: 893 ASFL 896 + L Sbjct: 875 KAAL 878 >gi|167645359|ref|YP_001683022.1| alanyl-tRNA synthetase [Caulobacter sp. K31] gi|205830018|sp|B0SZN4|SYA_CAUSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167347789|gb|ABZ70524.1| alanyl-tRNA synthetase [Caulobacter sp. K31] Length = 883 Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/907 (49%), Positives = 591/907 (65%), Gaps = 37/907 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F H ++PS+ L+P NDPTL+F N+GMVPFKN+FTG E P + Sbjct: 1 MPSLNEIRSTFLNYFGAADHAIVPSAPLVPQNDPTLLFVNAGMVPFKNVFTGAETPPHPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT++F L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTRDFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D EA LWKKI+GLS D+IIRI TNDNFWSM +TGPCGPCSEIFFD G Sbjct: 121 PKDKLLVTVYHTDTEAADLWKKIAGLSDDRIIRIATNDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E+G+R+IEIWNLVFMQFEQ ER LPK SIDTGMGLER+A V+Q Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQFEQMAGGERVSLPKPSIDTGMGLERIAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLFK LI AS ++TG++ EG +HRVI DHLRSSSFL+ADG+ P+NEGRGY Sbjct: 241 VHDNYDIDLFKALIAASVELTGVRAEGAQAPSHRVIADHLRSSSFLLADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L P L +MG AYPEL +A+ I ETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAYLLGANEPLMHRLAPTLVAQMGQAYPELRRAEASIVETLRQEEERFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ LLD + L +L+G+ AFKLYDT+G PLD+ QD + ARG+ +D F+ Sbjct: 361 VTLGRGMGLLDEATAGLSAGGVLDGETAFKLYDTYGFPLDLTQDAVRARGIT-VDTDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR+ ARA+ G G WF +KE+ G T F+GYD Sbjct: 420 VAMDRQRTMARANWAGSGQTGAAAAWFGIKEQSGPTNFVGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + VKAIV G VE A +G V+V+ D+T FYAE+GGQ GDTG G+ Sbjct: 462 -----TTETTGTVKAIVLDGAPVEAAQAGASVDVLLDRTSFYAESGGQAGDTGVIEAHGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD QK+A ++VH + G L+ S+V ++D R NHSA HL+H AL Sbjct: 517 ESRVTDTQKQAGDLYVHRVELA-GPLKVGDSVVASVDAARRTTTRANHSAAHLVHAALHH 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + D +RFD +H P+T+ E++ IE VN +I QN+P T+ M ++A Sbjct: 576 VLGPHVAQKGQMVDGDRMRFDFSHGGPLTADEIERIEAEVNAVIRQNVPAQTKEMAPQEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 I +GA AL G KY D VRV+++ E G +S LCGGTHV+ TG+I L IVSE + Sbjct: 636 IEAGAVALFGEKYGDSVRVLTLGESLTETGKAYSVELCGGTHVARTGDIALFKIVSEQGV 695 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEA+TG+ AR L+ Q K+LA K V+ RV+ + E + L QL Sbjct: 696 ASGVRRIEALTGEAARRFLLDQAGVAKALADQFKTPVAEVLARVDALVAERKALERQLAE 755 Query: 775 AKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVG 829 AK++L L +A ++ ++ V KEL+ V + +K++ + G++ LVG Sbjct: 756 AKKQLALGGGSGGAASGPEDVAGTALIARVLDGVGGKELRGVAEEFKKQLTNGGVVALVG 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + KA+V + VT DL +F+A DLA+ + +GG G GG+ AQ G P+ KA + Sbjct: 816 VT-DGKAAVTVAVTADLTAKFSAADLAKAAVIAMGGQGAGGKADFAQGGAPDATKAQAGL 874 Query: 890 AGVASFL 896 + + L Sbjct: 875 DAIKAAL 881 >gi|188581873|ref|YP_001925318.1| alanyl-tRNA synthetase [Methylobacterium populi BJ001] gi|205830142|sp|B1ZC90|SYA_METPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|179345371|gb|ACB80783.1| alanyl-tRNA synthetase [Methylobacterium populi BJ001] Length = 891 Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/899 (50%), Positives = 596/899 (66%), Gaps = 40/899 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TVY +D+EA LWKKI+G DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 TPERLLVTVYADDDEAAGLWKKIAGFGDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PALAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNPLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPATRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+P L EMG A+PEL++++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGRAFPELVRSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D +F+ Sbjct: 361 KTLERGLAILDAESRDLSAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTQAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ARA G G TE +WF +KE+ GAT+F+GY+ Sbjct: 420 AAMQRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++V A++++G VE +G VV +QTPFY E+GGQ+GDTG G G+ Sbjct: 462 -----TETAEAVVGALLREGGEVETLKAGDSGIVVVNQTPFYGESGGQVGDTGTISGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++T+ +KK +FVHH VE G L ++ L +D+ R + NHSATHLLH AL Sbjct: 517 KARVTNTEKKLGDLFVHHVTVEEGTLSLGAAVELKVDHARRSAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD++H KPI AEL +E+ N ++ QN PVVT++M ++A Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELTRVEEIANAVLLQNAPVVTKLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH--------SSALCGGTHVSSTGEIMLLY 709 I SGA AL G KY D VRVVS+ +D G S LCGGTHVS GEI + Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGWEVEGRLPNFSIELCGGTHVSQLGEIGQIT 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ ES++ AG+RRIEA+TG AR H + L LA LK +V R+ + EE R+ Sbjct: 697 VIGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756 Query: 770 L--QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGI 824 L +L A++K+ + + +VN M+ ++ V+ ++LK + D + ++ SGI Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREVNGVRLMARVVEGVEMRDLKGLADEGKSRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 + +VG+S + KA +++ VTEDL R++AV L R A LGG GGGGR MAQ+GGP+G+ Sbjct: 817 VAIVGVSADGKAGLVVGVTEDLTGRYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGPDGH 875 >gi|315499502|ref|YP_004088305.1| alanyl-tRNA synthetase [Asticcacaulis excentricus CB 48] gi|315417514|gb|ADU14154.1| alanyl-tRNA synthetase [Asticcacaulis excentricus CB 48] Length = 880 Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/894 (50%), Positives = 592/894 (66%), Gaps = 33/894 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR TFL++F KN HE++ SSSL+P NDPTLMFTN+GMV FKN+FTG E Y+ Sbjct: 1 MPSLNQIRQTFLDYFAKNDHEIVSSSSLVPHNDPTLMFTNAGMVQFKNVFTGAETRPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+L+TKE+ L Sbjct: 61 ATTSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAISHAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL TVY +D+EAF LWKKI+G S D+IIRI +DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PKDRLLATVYIDDDEAFNLWKKIAGFSDDRIIRIAGSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS EE G+R++EIWNLVFMQF+QQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 EHIWGGPPGSPEEDGDRFVEIWNLVFMQFDQQTDGTRLNLPKPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD+DLFK LI+AS + TG+K EG + +HRVI DHLRS+SFLIADG+ P+NEGRGY Sbjct: 241 VHNNYDVDLFKALIRASVEETGVKAEGEALPSHRVIADHLRSTSFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L P L EMG Y EL +A+ I ETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAYLLGANEPLMPRLAPVLVREMGDHYGELKRAEATIIETLRQEEERFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RG+ LLD ++L ++L G+VAFKLYDT+G PLD+ QD + A+GL+ +++ F Sbjct: 361 RTLGRGMTLLDEATANLKDGDMLEGEVAFKLYDTYGFPLDLTQDAIRAKGLS-VNVAGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+ R RA+ G G + + WFS++++ GA++F+GY+ L Sbjct: 420 AAMGEQKQRGRANWKGSGETSVQAEWFSIRDQAGASEFVGYEHLS--------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S + IV+ GE V E + G++++VVFD+T FY E GGQ GDTG G Sbjct: 465 --------TQSHARVIVRDGESVSEGLVGERLQVVFDRTVFYPEGGGQAGDTGTLHWAGG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK+A + VH + G+L + L +D R+ NHSA HLLH AL Sbjct: 517 EGRVLDTQKQAGDLIVHDVEITEGVLAVGDMVHLHVDGAKRQTTKSNHSAAHLLHAALKN 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + + +RFD +H P++ E++ IE VN +I QN T++M +A Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHGAPVSPEEIERIEAEVNAVILQNEAATTKMMAPAEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV---HSSALCGGTHVSSTGEIMLLYIVSESSI 716 I +GA AL G KY D VRV+S+ + G +S LCGGTHVS TG+I L I+SES I Sbjct: 637 IEAGAVALFGEKYGDEVRVLSLGHALDGADKGYSVELCGGTHVSRTGDIALFKIISESGI 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RRIEA TG+ AR +L+ Q +SLA KV V RVE + + ++L +L Sbjct: 697 AAGVRRIEAFTGEAARQYLLEQAGVARSLADQFKVPVAQVSARVEALVNDRKRLEKELAD 756 Query: 775 AKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 AKR L + + I V ++ ++ V K+L+ + + +K++ SG++ LVG+ Sbjct: 757 AKRALAVGGGGKASGPEDINGVKVIARVLDGVGGKDLRPLAEDFKKQVGSGVVALVGV-L 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + KA+V + VT DL RFNA +LA+ + +GG G GG+P AQ G P+ KA+ Sbjct: 816 DGKAAVTVAVTPDLTGRFNAAELAKAAVIAMGGQGAGGKPDFAQGGAPDATKAE 869 >gi|254561741|ref|YP_003068836.1| alanyl-tRNA synthetase [Methylobacterium extorquens DM4] gi|254269019|emb|CAX24980.1| alanyl-tRNA synthetase [Methylobacterium extorquens DM4] Length = 891 Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/896 (50%), Positives = 592/896 (66%), Gaps = 40/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +DEEA LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E + ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEASTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+P L EMG A+PEL +++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D +F+ Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+ ARA G G TE +WF +KE+ GAT+F+GYD Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++ A+++ G VE +G+ VV +QTPFY E+GGQ+GDTG G G+ Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++T +KK +FVHH VE G L ++ L +D+ R + NHSATHLLH AL Sbjct: 517 KARVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD++H KPI AEL +E+ N ++ QN PVVT++M ++A Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH--------SSALCGGTHVSSTGEIMLLY 709 I SGA AL G KY D VRVVS+ +D G S LCGGTHVS GEI + Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ ES++ AG+RRIEA+TG AR H + L LA LK +V R+ + EE R+ Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756 Query: 770 L--QLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L +L A++K+ + +I V M+ ++ V+ ++LK + D + ++ SGI Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + LVG+S + KA +++ VTEDL +R++AV L R A LGG GGGGR MAQ+GGP Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872 >gi|163852018|ref|YP_001640061.1| alanyl-tRNA synthetase [Methylobacterium extorquens PA1] gi|205830139|sp|A9W5Y4|SYA_METEP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|163663623|gb|ABY30990.1| alanyl-tRNA synthetase [Methylobacterium extorquens PA1] Length = 891 Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/896 (50%), Positives = 592/896 (66%), Gaps = 40/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +DEEA LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E + ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+P L EMG A+PEL +++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D +F+ Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+ ARA G G TE +WF +KE+ GAT+F+GYD Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++ A+++ G VE +G+ VV +QTPFY E+GGQ+GDTG G G+ Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++T +KK +FVHH VE G L ++ L +D+ R + NHSATHLLH AL Sbjct: 517 KARVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD++H KPI AEL +E+ N ++ QN PVVT++M ++A Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH--------SSALCGGTHVSSTGEIMLLY 709 I SGA AL G KY D VRVVS+ +D G S LCGGTHVS GEI + Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ ES++ AG+RRIEA+TG AR H + L LA LK +V R+ + EE R+ Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756 Query: 770 L--QLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L +L A++K+ + +I V M+ ++ V+ ++LK + D + ++ SGI Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + LVG+S + KA +++ VTEDL R++AV+L R A LGG GGGGR MAQ+GGP Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTGRYDAVELVRAGAGHLGGKGGGGRRDMAQAGGP 872 >gi|240139285|ref|YP_002963760.1| alanyl-tRNA synthetase [Methylobacterium extorquens AM1] gi|240009257|gb|ACS40483.1| alanyl-tRNA synthetase [Methylobacterium extorquens AM1] Length = 891 Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/896 (50%), Positives = 591/896 (65%), Gaps = 40/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +DEEA LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E + ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+P L EMG A+PEL +++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D +F+ Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+ ARA G G TE +WF +KE+ GAT+F+GYD Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++V A+++ G VE +G+ VV +QTPFY E+GGQ+GDTG G G+ Sbjct: 462 -----TEAAEAVVGALLRDGSEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++T KK +FVHH VE G L ++ L +D+ R + NHSATHLLH AL Sbjct: 517 KARVTGTDKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRANHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD++H KPI AEL +E+ N ++ QN PVVT++M ++A Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH--------SSALCGGTHVSSTGEIMLLY 709 I SGA AL G KY D VRVVS+ +D G S LCGGTHVS GEI + Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ ES++ AG+RRIEA+TG AR H + L LA LK +V R+ + EE R+ Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756 Query: 770 L--QLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L +L A++K+ + +I V M+ ++ V+ ++LK + D + ++ SGI Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + LVG+S + KA +++ VTEDL +R++AV L R A LGG GGGGR MAQ+GGP Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872 >gi|218530772|ref|YP_002421588.1| alanyl-tRNA synthetase [Methylobacterium chloromethanicum CM4] gi|218523075|gb|ACK83660.1| alanyl-tRNA synthetase [Methylobacterium chloromethanicum CM4] Length = 891 Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/896 (50%), Positives = 591/896 (65%), Gaps = 40/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYLK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY +DEEA LW+KI+G S +KIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 SPEKLLVTVYADDEEAAGLWRKIAGFSDEKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNSLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A E + ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPEPSTRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+P L EMG A+PEL +++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPTLVREMGQAFPELARSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D +F+ Sbjct: 361 KTLERGLAILDTETRDLAAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTKAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+ ARA G G TE +WF +KE+ GAT+F+GYD Sbjct: 420 AAMLRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T +++ A+++ G VE +G+ VV +QTPFY E+GGQ+GDTG G G+ Sbjct: 462 -----TEAAEAVIGALLRDGAEVETLKAGENGIVVANQTPFYGESGGQVGDTGTISGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +T +KK +FVHH VE G L ++ L +D+ R + NHSATHLLH AL Sbjct: 517 KAGVTGTEKKLGDLFVHHVTVEEGTLAVGAAVELKVDHARRAAIRSNHSATHLLHEALRQ 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + P+ LRFD++H KPI AEL +E+ N ++ QN PVVT++M ++A Sbjct: 577 VLGDHVAQKGSLVAPERLRFDISHPKPIDEAELSRVEEIANAVLLQNAPVVTKLMAVDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVH--------SSALCGGTHVSSTGEIMLLY 709 I SGA AL G KY D VRVVS+ +D G S LCGGTHVS GEI + Sbjct: 637 IESGARALFGEKYGDEVRVVSMGRPVDDEGREVEGRLPNFSIELCGGTHVSQLGEIGQIT 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 ++ ES++ AG+RRIEA+TG AR H + L LA LK +V R+ + EE R+ Sbjct: 697 VLGESAVGAGVRRIEAMTGTAARRHRATESRTLSQLAGLLKAPVADVPERLSTLIEERRR 756 Query: 770 L--QLIHAKRKLQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L +L A++K+ + +I V M+ ++ V+ ++LK + D + ++ SGI Sbjct: 757 LEKELADARKKIAMGGASGGGDEAREINGVKLMARVVEGVEMRDLKGLADEGKTRLGSGI 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + LVG+S + KA +++ VTEDL +R++AV L R A LGG GGGGR MAQ+GGP Sbjct: 817 VALVGVSADGKAGLVVGVTEDLTERYDAVGLVRAGAGHLGGKGGGGRRDMAQAGGP 872 >gi|205830103|sp|Q0BSD5|SYA_GRABC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 880 Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/887 (50%), Positives = 594/887 (66%), Gaps = 32/887 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ + IR TFL +F +NGHE++ SS L+P NDPTL+F NSGMV FKN+FTGQE+ Y Sbjct: 1 MATSNDIRATFLNYFARNGHEVVDSSPLVPRNDPTLLFVNSGMVQFKNVFTGQERRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+++T+EF L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWNVVTREFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 +L +TVY +D++A +LWK I+GL ++IIRI ++DNFW M +TGPCGPCSEIF+D Sbjct: 121 PAEKLLVTVYQDDDDAARLWKSIAGLPEERIIRIASSDNFWRMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQ+E+ R LP+ SIDTGMGLER+A VLQ Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYEEGPPGTRVNLPRPSIDTGMGLERLAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI AS + TG +G + +HRV+ DHLRS+SFL+ADG+LP+NEGRGY Sbjct: 241 KHDNYDTDTLRALIVASAEATGQDPDGPHKTSHRVVADHLRSTSFLMADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G TEPL+ L+PAL +MG+AY EL+QA+ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHLMGMTEPLLYRLVPALVRQMGAAYGELVQAQSLITETLRLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL +L + LG+ + L+GDVAFKLYDT+G PLD+ QD L +G A +D+ F+ Sbjct: 361 AMLDRGLAMLSDEVGKLGEGQTLSGDVAFKLYDTYGFPLDLTQDALREQGRA-VDVAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR RARA G G E +WF ++++ G T+F+GY Sbjct: 420 AAMTEQRRRARAAWSGSGDAAQEGVWFEIRDRVGGTEFLGYS------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538 T + + A+V G + E A +G +V VV +QTPFY E+GGQ+GDTG G +G Sbjct: 462 -----TEKAEAEIIALVANGALTETAPAGTEVAVVLNQTPFYGESGGQVGDTGIITGPNG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +R+ I+D QKK +FVH VE G+ + + + +D+Q R + +HSATHLLH AL Sbjct: 517 LRIIISDTQKKLGDVFVHLGRVESGLAQIGQPVEVVVDHQRRSAIRAHHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS PD LRFDV+ PIT +L +E VN +I QN PV TR+M E Sbjct: 577 RRLGTHVAQKGSLNAPDRLRFDVSQPTPITRDDLAVVEAEVNALIRQNSPVNTRLMTPEQ 636 Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDG-GVHSSALCGGTHVSSTGEIMLLYIVSESS 715 A+A GA AL G KY D VRVVS+ E+G +S LCGGTHV TG+I L I ES+ Sbjct: 637 AVAEGAMALFGEKYGDEVRVVSMGAPVEEGKPAYSIELCGGTHVGRTGDIGLFRITGESA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + AG+RRIEA+TG+ A + + + +L+ AS L+V+ G+V RV + EE +KL QL Sbjct: 697 VSAGVRRIEAVTGEAALAQIAEAERRLQETASLLRVAPGDVTTRVASLLEERKKLEAQLA 756 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 A+RKL ++ V + + +V KELK + +A+ ++++SG++ LV + E Sbjct: 757 DAQRKLATGGAADKVEEVGGVKLAARNLGDVAPKELKGLAEAIARQLESGVVALVS-TAE 815 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 KASV++ VT DL RF+AV L R ++ +GG GGGGRP MAQ+GGP Sbjct: 816 GKASVVVGVTADLTSRFDAVTLVRAASAAVGGKGGGGRPDMAQAGGP 862 >gi|114328034|ref|YP_745190.1| alanyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1] gi|114316208|gb|ABI62268.1| alanyl-tRNA synthetase [Granulibacter bethesdensis CGDNIH1] Length = 945 Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/887 (50%), Positives = 594/887 (66%), Gaps = 32/887 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ + IR TFL +F +NGHE++ SS L+P NDPTL+F NSGMV FKN+FTGQE+ Y Sbjct: 66 MATSNDIRATFLNYFARNGHEVVDSSPLVPRNDPTLLFVNSGMVQFKNVFTGQERRPYSR 125 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+++T+EF L Sbjct: 126 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWNVVTREFGL 185 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 +L +TVY +D++A +LWK I+GL ++IIRI ++DNFW M +TGPCGPCSEIF+D Sbjct: 186 PAEKLLVTVYQDDDDAARLWKSIAGLPEERIIRIASSDNFWRMGDTGPCGPCSEIFYDHG 245 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQ+E+ R LP+ SIDTGMGLER+A VLQ Sbjct: 246 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYEEGPPGTRVNLPRPSIDTGMGLERLAAVLQG 305 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI AS + TG +G + +HRV+ DHLRS+SFL+ADG+LP+NEGRGY Sbjct: 306 KHDNYDTDTLRALIVASAEATGQDPDGPHKTSHRVVADHLRSTSFLMADGVLPSNEGRGY 365 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G TEPL+ L+PAL +MG+AY EL+QA+ LI ETLR E+ RF Sbjct: 366 VLRRIMRRAMRHAHLMGMTEPLLYRLVPALVRQMGAAYGELVQAQSLITETLRLEETRFK 425 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL +L + LG+ + L+GDVAFKLYDT+G PLD+ QD L +G A +D+ F+ Sbjct: 426 AMLDRGLAMLSDEVGKLGEGQTLSGDVAFKLYDTYGFPLDLTQDALREQGRA-VDVAGFD 484 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR RARA G G E +WF ++++ G T+F+GY Sbjct: 485 AAMTEQRRRARAAWSGSGDAAQEGVWFEIRDRVGGTEFLGYS------------------ 526 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538 T + + A+V G + E A +G +V VV +QTPFY E+GGQ+GDTG G +G Sbjct: 527 -----TEKAEAEIIALVANGALTETAPAGTEVAVVLNQTPFYGESGGQVGDTGIITGPNG 581 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +R+ I+D QKK +FVH VE G+ + + + +D+Q R + +HSATHLLH AL Sbjct: 582 LRIIISDTQKKLGDVFVHLGRVESGLAQIGQPVEVVVDHQRRSAIRAHHSATHLLHEALR 641 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS PD LRFDV+ PIT +L +E VN +I QN PV TR+M E Sbjct: 642 RRLGTHVAQKGSLNAPDRLRFDVSQPTPITRDDLAVVEAEVNALIRQNSPVNTRLMTPEQ 701 Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDG-GVHSSALCGGTHVSSTGEIMLLYIVSESS 715 A+A GA AL G KY D VRVVS+ E+G +S LCGGTHV TG+I L I ES+ Sbjct: 702 AVAEGAMALFGEKYGDEVRVVSMGAPVEEGKPAYSIELCGGTHVGRTGDIGLFRITGESA 761 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + AG+RRIEA+TG+ A + + + +L+ AS L+V+ G+V RV + EE +KL QL Sbjct: 762 VSAGVRRIEAVTGEAALAQIAEAERRLQETASLLRVAPGDVTTRVASLLEERKKLEAQLA 821 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 A+RKL ++ V + + +V KELK + +A+ ++++SG++ LV + E Sbjct: 822 DAQRKLATGGAADKVEEVGGVKLAARNLGDVAPKELKGLAEAIARQLESGVVALVS-TAE 880 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 KASV++ VT DL RF+AV L R ++ +GG GGGGRP MAQ+GGP Sbjct: 881 GKASVVVGVTADLTSRFDAVTLVRAASAAVGGKGGGGRPDMAQAGGP 927 >gi|296448225|ref|ZP_06890121.1| alanyl-tRNA synthetase [Methylosinus trichosporium OB3b] gi|296254265|gb|EFH01396.1| alanyl-tRNA synthetase [Methylosinus trichosporium OB3b] Length = 897 Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/900 (49%), Positives = 591/900 (65%), Gaps = 43/900 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IRTTFL+FF +NGHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNQIRTTFLDFFSRNGHEKVASSPLVPLNDPTLMFTNAGMVQFKNVFTGFEKRHYAR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKC+RAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+LAW L+++E L Sbjct: 61 ATSAQKCMRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEGAIELAWTLVSRELGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY +D+EA+ LWKKI+G S D+IIRI ++DNFWSM + GPCGPCSEIF+DQG Sbjct: 121 PRERLLVTVYHDDDEAYGLWKKIAGFSDDRIIRIASSDNFWSMGDLGPCGPCSEIFYDQG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS E+G+R++E WNLVFMQ++Q ER LP+ SIDTGMGLER+A +LQ Sbjct: 181 ESVAGGPPGSPDEDGDRFLEFWNLVFMQYDQTAPGERVPLPRPSIDTGMGLERIAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +DIDLF+ L A TG+ G +HRVI DHLR+S+FL+ADG+ P+NEGRGY Sbjct: 241 VHSVFDIDLFRRLTGAVADATGVDAAGPQAASHRVIADHLRASAFLVADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG EPLM L+ AL TEM AYPEL +A+ LI +TL +E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAAEPLMHRLVGALVTEMAQAYPELTRAERLIRDTLLTEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL +LD + L + L+G+ AFKLYDT+G PLD+ +D L +RGL+ +D F Sbjct: 361 QTLARGLAILDEETATLAQGGSLSGETAFKLYDTYGFPLDLTEDALRSRGLS-VDKAGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR+ AR G G TE +WF+++E+ GAT+F+GYD Sbjct: 420 TAMARQRAEARKAWAGSGETATESVWFAIEERVGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T IV A++ G G + V+ +QTPFYAE+GGQ+GD G G+ Sbjct: 462 -----TEKSEGIVVALLHDGAETFRLEPGARGAVLLNQTPFYAESGGQIGDIGEMRAKGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++T+ QKK G+FVH +VE G + ++L L ID+ R + NHSATH+LH AL Sbjct: 517 RFRVTNTQKKLGGLFVHEGVVEEGAITPGLALELEIDHSRRNAVRANHSATHILHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + D LRFD TH KP+T E+ +E N+++ N PV TR+M ++DA Sbjct: 577 VLGDHVAQKGSLVASDRLRFDFTHPKPLTEEEVAEVERIANEVVQDNAPVDTRLMAQDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSS-------------ALCGGTHVSSTGEIM 706 I SGA AL G KY D VRVVS+ G S+ LCGGTHV TG+I Sbjct: 637 IHSGARALFGEKYGDEVRVVSMGSLSTGQPSTDLAPTDQHHAFSVELCGGTHVRRTGDIG 696 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L+ IVS+ ++ +G+RRIEA T + AR+ L+ L+ +A+ ++V R+ + EE Sbjct: 697 LVSIVSQGAVASGVRRIEAKTAEAARAQLVADSRALREVAALVRVPVDETPARLAALLEE 756 Query: 767 YRKL--QLIHAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 ++L +L AKRKL +I + + +S +D K+LKS++D +K + Sbjct: 757 RKQLERELAEAKRKLAMGGGANGAAPVREIDGIKLFAKAVSGIDPKDLKSLVDEQKKALG 816 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 SG++ + S + KA +++ VT DL +NAVDL R +++ LGG GGGGRP +AQ+GGP+ Sbjct: 817 SGVVAIASASADGKAGIVVGVTADLTTTYNAVDLVRAASEKLGGKGGGGRPDLAQAGGPD 876 >gi|23016227|ref|ZP_00055985.1| COG0013: Alanyl-tRNA synthetase [Magnetospirillum magnetotacticum MS-1] Length = 877 Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/895 (49%), Positives = 595/895 (66%), Gaps = 36/895 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 4 MQTANEIRRTFLDFFEKNGHTVVNSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRDYVR 63 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI+ AW+L+TK+F + Sbjct: 64 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDQAIEHAWNLITKDFGI 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY +D++A WKKI+GL +IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 124 DKNRLLVTVYHDDDQAADAWKKIAGLPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 183 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS ++G+R+IEIWNLVFMQFEQ +K+ R LPK SIDTGMGLER+A +LQ Sbjct: 184 DHIPGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKETRVPLPKPSIDTGMGLERLAALLQG 243 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD+DL + LI+AS + + +G + V+HRV+ DHLRSSSFLIADG+LP+NEGRGY Sbjct: 244 KHDNYDVDLLRALIEASAESSNTDADGPHKVSHRVVADHLRSSSFLIADGVLPSNEGRGY 303 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G +EPL+ L+PAL +MG AYPEL++A LI ETL+ E+ RF Sbjct: 304 VLRRIMRRAMRHAHLMGCSEPLLWKLVPALTRQMGEAYPELVRANALITETLKLEETRFK 363 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLD+GL LLD ++ +G L G+VAFKLYDT+G PLD+ QD L A+G+ G+D F Sbjct: 364 VTLDKGLKLLDDEITRIGSAGKLAGEVAFKLYDTYGFPLDLTQDALKAKGI-GVDTDGFA 422 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ AR G G TE +WF L+EK GA++F+GYD Sbjct: 423 SAMERQRAEARKAWAGSGDTATETVWFELREKLGASEFLGYD------------------ 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGD 537 + A+V+ G++VE G V V+ +QTPFY E+GGQ+GDTG G Sbjct: 465 -----AEQAEGKIVALVENGKVVEAVHPGHSVAVIANQTPFYGESGGQMGDTGIITVAGG 519 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + +TD QKK + VH VE G + +D R +HSATHLLH L Sbjct: 520 KATITVTDTQKKLGDLVVHFGTVEGGPVAVGEDAHFAVDSSRRDATRGHHSATHLLHAVL 579 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ILG HV+Q GS + PD LRFD H+K ++ E +++E VN I N V T +M + Sbjct: 580 RGILGDHVTQKGSQVGPDRLRFDFAHTKALSPEESRAVEAEVNRRIRVNAEVATTVMTPD 639 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DAI +GA AL G KY + VRVVS+ G S+ LCGGTH TG+I IV+ES++ Sbjct: 640 DAIKAGAMALFGEKYGEEVRVVSM-----GDLSTELCGGTHARRTGDIGGFKIVAESAVA 694 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+TG + Q++ L A LK + ++ R+ + +E RKL+ A+ Sbjct: 695 SGVRRIEAVTGPAFLAWAQAQEDLLARAADTLKAAPTDLPARIAGLMDERRKLERELAEV 754 Query: 778 KLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + QL + + + + + +++ V K+LK + D ++K+I SG+I+LV + Sbjct: 755 RKQLATGGGQGAATKTVNGITYAGKVLNGVPPKDLKGMADEIKKQIGSGVIVLVS-DADG 813 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 KAS+++ VTEDL +++AVDL R+ ++ LGG GGGGRP MAQ+GGP+ + A A+ Sbjct: 814 KASIVVCVTEDLTAKYSAVDLVRIGSEALGGKGGGGRPDMAQAGGPDASAAQAAV 868 >gi|83312631|ref|YP_422895.1| alanyl-tRNA synthetase [Magnetospirillum magneticum AMB-1] gi|123541005|sp|Q2W1D9|SYA_MAGMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|82947472|dbj|BAE52336.1| Alanyl-tRNA synthetase [Magnetospirillum magneticum AMB-1] Length = 878 Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/899 (49%), Positives = 598/899 (66%), Gaps = 40/899 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MQTANEIRRTFLDFFEKNGHTVVNSSPLVPRNDPTLMFTNAGMVQFKNVFTGIEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+TK+F + Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDLAIEHAWNLITKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY +D++A WKKI+GL +IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DKSRLLVTVYHDDDQAADAWKKIAGLPESRIIRIPTSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS ++G+R+IEIWNLVFMQFEQ +K+ R LPK SIDTGMGLER+A +LQ Sbjct: 181 EHIFGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKETRIPLPKPSIDTGMGLERLAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD+DL + LI+AS + + +G + V+HRV+ DHLRSSSFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDVDLLRALIEASAEASNTDPDGPHKVSHRVVADHLRSSSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G TEPL+ L+PAL +MG AYPEL++A LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLMGCTEPLLHKLVPALTRQMGEAYPELVRANALITETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLD+GL LLD ++ +G + L G+VAFKLYDT+G PLD+ QD L A+G+ G+D F Sbjct: 361 VTLDKGLKLLDDEITRIGSGQKLAGEVAFKLYDTYGFPLDLTQDALKAKGI-GVDTDGFA 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ AR G G TE +WF L+EK GA++F+GYD Sbjct: 420 SAMERQRAEARKAWAGSGDTATETVWFELREKLGASEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC------ 533 + A+V+ G++VE G +V V+ +QTPFY E+GGQ+GDTG Sbjct: 462 -----AEQAEGKIVALVENGKVVEAVHPGHQVAVIANQTPFYGESGGQMGDTGVITLGTP 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G + +TD QKK + VH VE G + ++ R +HSATHLL Sbjct: 517 GTGGKATIAVTDTQKKLGDLIVHFGTVEGGPVAVGEDAHFAVESTRRDATRGHHSATHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ILG HV+Q GS + PD LRFD H+K +++ E +++E VN I N V T++ Sbjct: 577 HAALRDILGDHVTQKGSQVGPDRLRFDFAHTKALSAEETRAVEAEVNRRIRLNAEVATKV 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DAI +GA AL G KY + VRVVS+ G S+ LCGGTH + TG+I IV+E Sbjct: 637 MTPDDAIKAGAMALFGEKYGEEVRVVSM-----GDLSTELCGGTHANRTGDIGGFKIVAE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ +G+RRIEA+TG + Q++ L A LK + ++ R+ + ++ RKL+ Sbjct: 692 SAVASGVRRIEAVTGPAFLAWAQAQEDLLAKAADTLKAAPADLPARIAGLMDDRRKLERE 751 Query: 774 HAKRKLQLNV---EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A+ + QL + + + + + ++S V +K+LK + D ++K+I SGII LV Sbjct: 752 LAEVRKQLATGGGQGAATKTVNGITYAGKVLSGVPAKDLKGMADEIKKQIGSGIIALVS- 810 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + KAS+++ VTEDL + +AVDL R+ ++ LGG GGGGRP MAQ+GGP+ + A A+ Sbjct: 811 DADGKASIVVCVTEDLTSKHSAVDLVRIGSEALGGKGGGGRPDMAQAGGPDASAAQAAV 869 >gi|83858787|ref|ZP_00952309.1| alanyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633] gi|83853610|gb|EAP91462.1| alanyl-tRNA synthetase [Oceanicaulis alexandrii HTCC2633] Length = 886 Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/909 (49%), Positives = 602/909 (66%), Gaps = 38/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ + IR+ FL+FF K GHE++ S+ L+P +DPTL+F N+GMVPFKN+FTG E+ Y Sbjct: 1 MTALRDIRSQFLDFFAKEGHEIVQSAPLVPQDDPTLLFVNAGMVPFKNVFTGAERRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW ++T+EF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDNAIEFAWKMVTQEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY ED+EA LW+KI+GLS D+IIRI+T+DNFWSM +TGPCGPCSEIFFD G Sbjct: 121 PKDKLLVTVYSEDDEAAALWRKIAGLSDDRIIRISTSDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PG+ EE G+R+IEIWNLVFMQFEQQ ER LPK SIDTGMGLER+A VLQ Sbjct: 181 PDIWGGPPGTPEEDGDRFIEIWNLVFMQFEQQAGGERINLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD+DLFK LI ASE+ +K EG+ + +HRVI DHLRS+SFLIADG+ P+NEGRGY Sbjct: 241 VHNNYDVDLFKTLINASEEALKVKAEGDALASHRVIADHLRSTSFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EP++ L L EMG A+PEL +A +IEETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAHLLGANEPVLFGLAKTLSDEMGEAFPELPRALPVIEETLRGEEERFQ 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL LLD ++L + + L G+ AFKLYDT+G PLD+ +D L RGL+ +D F+ Sbjct: 361 RTLGRGLTLLDEATANLKEGDALPGETAFKLYDTYGFPLDLTEDALRTRGLS-VDHAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR+ ARA G G E +WFS++++ GAT F+GY Sbjct: 420 AAMERQRADARASWTGSGQAAPEALWFSVRDRLGATDFVGYH------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538 T+ S + AIV G E +GQ E++F TPFYAE GGQ+GD G D G Sbjct: 462 -----THDGQSELTAIVSDGAEQSELSAGQGAELIFKSTPFYAEGGGQIGDAGVITFDNG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R ++DVQK+A I+ H ++E G ++ + ++D + R ++ NHSATHLLH AL Sbjct: 517 ARFIVSDVQKRAGSIYAHIGVLEEGGIKIGDAASQSVDAERRTKVRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + PD LRFD +H+K +T AE +IE VN +I QN T M E Sbjct: 577 DVLGPHVTQKGSYVGPDRLRFDFSHAKALTEAETAAIEAQVNAVIRQNAEAKTAEMTPEK 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 AI +GA AL G KY + VRV+++ D +S LCGG HV+ TG+I L IV ESS Sbjct: 637 AIEAGALALFGEKYGETVRVLAMGDSLKSDDKAYSVELCGGIHVNRTGDIALFKIVGESS 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 AG+RR+EA+TG+ AR L + K K A+ LKV +V R+E + E + L QL Sbjct: 697 AAAGVRRLEAVTGEAARQWLEAEANKAKDAAAALKVPTVELVERIEALQAERKTLERQLA 756 Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 AK++L + +I + ++ ++ V K+L+ ++D +K++ SGI Sbjct: 757 EAKKQLAMGGGGGGGAAPAGPEEINGIKLIARVVEGVGGKDLRGLVDEARKQMGSGIAAF 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 VG++ + KA++ + +T+DL +AVD R + +GG GGGGRP AQ+GGP+G+KA+ Sbjct: 817 VGVN-DGKAALAVGLTDDLTGSMSAVDFVRAGSAAVGGKGGGGRPDFAQAGGPDGDKAED 875 Query: 888 AIAGVASFL 896 A+A + L Sbjct: 876 ALAAIRQVL 884 >gi|260752686|ref|YP_003225579.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552049|gb|ACV74995.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 890 Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/914 (49%), Positives = 600/914 (65%), Gaps = 41/914 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E Y+ Sbjct: 1 MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 D RL +TVY DEEAF LW+KI+GL D+II+I T+DNFWSM +TGPCGPCSEIF+D Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E G E+G+R++EIWNLVFMQ+EQ N + R LP+ SIDTGMGLER+A+VLQ Sbjct: 181 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI AS ++T +G +HRVI DHLR++ FL+ADG+LPANEGRGY Sbjct: 241 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G EPLM L+PAL +EMG AYPEL++AK LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL +L+ HL + L G+VAF+LYDT+G P D+ D L AR L +D F+ Sbjct: 361 QTLANGLKILEDETQHLKSGDTLPGEVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR ARA G G +++IWF + ++ G T+F GY +G Sbjct: 420 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538 S + A+++ G+ VE A G + ++ +QTPFY E+GGQ GD G G+ Sbjct: 466 ---------SGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNND 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++ +TD QK I H A +E+G ++ + L +D +R +L NHSATHLLH AL Sbjct: 517 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HVSQ GS ++ + LRFD +H K ++ EL +IE VN I N V TR+M E Sbjct: 577 DQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPES 636 Query: 659 AIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A+ +GA AL G KY + VRV+S+ + + S LCGGTHVS+ G+I L +IVSE Sbjct: 637 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 +++ +GIRRIEA+TG+ AR L+G+D L+ AS LK V R I +E RK + Sbjct: 697 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 756 Query: 772 LIHAKRKLQL-------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L A++ L L + + K+ F+ +I +D K L+ ++D +K I+SG+ Sbjct: 757 LADAQKALALANANGGQGSNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I L+ ++ E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+ Sbjct: 817 IALITVN-EGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 875 Query: 885 ADQAIAGVASFLKK 898 A QA+ V + L+K Sbjct: 876 AAQALEAVKALLEK 889 >gi|241762269|ref|ZP_04760350.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373172|gb|EER62802.1| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 930 Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/914 (49%), Positives = 600/914 (65%), Gaps = 41/914 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E Y+ Sbjct: 41 MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 100 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L Sbjct: 101 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 160 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 D RL +TVY DEEAF LW+KI+GL D+II+I T+DNFWSM +TGPCGPCSEIF+D Sbjct: 161 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 220 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E G E+G+R++EIWNLVFMQ+EQ N + R LP+ SIDTGMGLER+A+VLQ Sbjct: 221 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 280 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI AS ++T +G +HRVI DHLR++ FL+ADG+LPANEGRGY Sbjct: 281 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 340 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G EPLM L+PAL +EMG AYPEL++AK LIEETLR E+ RF Sbjct: 341 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 400 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL +L+ HL + L G+VAF+LYDT+G P D+ D L AR L +D F+ Sbjct: 401 QTLANGLKILEDETQHLKSGDTLPGEVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 459 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR ARA G G +++IWF + ++ G T+F GY +G Sbjct: 460 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKG-------------- 505 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538 S + A+++ G+ VE A G + ++ +QTPFY E+GGQ GD G IG+ Sbjct: 506 ---------SGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVIIGNND 556 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++ +TD QK I H A +E+G ++ + L +D +R +L NHSATHLLH AL Sbjct: 557 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 616 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HVSQ GS ++ + LRFD +H K +T EL +IE VN I N V TR+M E Sbjct: 617 DQLGQHVSQKGSMVSAERLRFDFSHQKALTDQELAAIEAEVNQQILNNSVVTTRLMTPES 676 Query: 659 AIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A+ +GA AL G KY + VRV+S+ + + S LCGGTHVS+ G+I L +IVSE Sbjct: 677 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 736 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 +++ +GIRRIEA+TG+ AR L+G+D L+ AS LK V R I +E RK + Sbjct: 737 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 796 Query: 772 LIHAKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L A++ L L + K+ F+ +I +D K L+ ++D +K I+SG+ Sbjct: 797 LADAQKALALANANGGQGGNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 856 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I L+ ++ E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+ Sbjct: 857 IALITVN-EGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 915 Query: 885 ADQAIAGVASFLKK 898 A QA+ V + L+K Sbjct: 916 AAQALEAVKALLEK 929 >gi|283856345|ref|YP_162580.2| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4] gi|59802972|sp|Q9RNN8|SYA_ZYMMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|283775342|gb|AAV89469.2| alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4] Length = 890 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/914 (49%), Positives = 598/914 (65%), Gaps = 41/914 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FLE+F+KNGH ++PS+ L+P NDPTLMF N+GMVPFKN FTG E Y+ Sbjct: 1 MITTNEIRRSFLEYFEKNGHRIVPSAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 D RL +TVY DEEAF LW+KI+GL D+II+I T+DNFWSM +TGPCGPCSEIF+D Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E G E+G+R++EIWNLVFMQ+EQ N + R LP+ SIDTGMGLER+A+VLQ Sbjct: 181 PEIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI AS ++T +G +HRVI DHLR++ FL+ADG+LPANEGRGY Sbjct: 241 VHDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G EPLM L+PAL +EMG AYPEL++AK LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL +L+ HL + L G VAF+LYDT+G P D+ D L AR L +D F+ Sbjct: 361 QTLANGLKILEDETQHLKSGDTLPGAVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR ARA G G +++IWF + ++ G T+F GY +G Sbjct: 420 AAMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG- 538 S + A+++ G+ VE A G + ++ +QTPFY E+GGQ GD G G+ Sbjct: 466 ---------SGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNND 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++ +TD QK I H A +E+G ++ + L +D +R +L NHSATHLLH AL Sbjct: 517 LKMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HVSQ GS ++ + LRFD +H K ++ EL +IE VN I N V TR+M E Sbjct: 577 DQLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPES 636 Query: 659 AIASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A+ +GA AL G KY + VRV+S+ + + S LCGGTHVS+ G+I L +IVSE Sbjct: 637 AVEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSE 696 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 +++ +GIRRIEA+TG+ AR L+G+D L+ AS LK V R I +E RK + Sbjct: 697 TAVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKSERA 756 Query: 772 LIHAKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L A++ L L + K+ F+ +I +D K L+ ++D +K I+SG+ Sbjct: 757 LADAQKALALANANGGQGGNNAAPEKVGAYQFIGQVIEGLDPKALRGLIDENKKIIESGV 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I L+ ++ E +ASV I V++ L D+ +AVDL R + + LGG GGGGRP MAQ GGPNGN+ Sbjct: 817 IALITVN-EGRASVAIGVSDSLKDKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNE 875 Query: 885 ADQAIAGVASFLKK 898 A QA+ V + L+K Sbjct: 876 AAQALEAVKALLEK 889 >gi|288960191|ref|YP_003450531.1| alanyl-tRNA synthetase [Azospirillum sp. B510] gi|288912499|dbj|BAI73987.1| alanyl-tRNA synthetase [Azospirillum sp. B510] Length = 889 Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/899 (50%), Positives = 591/899 (65%), Gaps = 45/899 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR TFL+FF K GH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y+ Sbjct: 1 MQTANDIRRTFLDFFAKQGHQIVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGAETRPYRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+L+TKE+ L Sbjct: 61 AVTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAIAFAWNLITKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TV+ DE+A +W+K++GLS D+IIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 121 PADKLLVTVHTSDEDAAAIWRKVAGLSDDRIIRIPTDDNFWRMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R+IEIWNLVFMQ+EQ LPK SIDTGMGLER+A VLQ Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQYEQLGPDNLVPLPKPSIDTGMGLERLAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDIDL + LI AS + T +G + V+HRVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 QHDNYDIDLMRALIMASAEATKTAADGAHAVSHRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G EPLM L+PAL +MG AYPEL +A+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHMIGAREPLMHRLVPALIQQMGDAYPELNRARALIVETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ + HLG+ + L GDVAFKLYDT+G PLD+ QD+L + G+D F Sbjct: 361 QTLERGLRLLEDEVGHLGEGQPLAGDVAFKLYDTYGFPLDLTQDVLRGQN-RGVDEAGFK 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++EQR +AR G G TEK+W+ +K++ GAT+F GYD Sbjct: 420 AAMDEQRRKARESWAGSGEVGTEKLWYEIKDELGATEFFGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538 T V AIV+ VE A G +V VV +QTPFY E+GGQ+GD G G Sbjct: 462 -----TEVAEGKVTAIVKGDTRVEAAAIGDQVMVVVNQTPFYGESGGQVGDAGVIFSAGG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++D KK ++ H V +GIL + L +D R + NHSATHLLH AL Sbjct: 517 AEVAVSDTLKKLGAVWAHVGTVTKGILSVGDVVELRVDSSRRAAIRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS + P+ LRFD++ +T+A++ +IED VN + N VVTR+M+ ++ Sbjct: 577 HRLGDHVTQKGSLVAPERLRFDISQPTGLTAADIAAIEDEVNRRVLANSEVVTRLMSPDE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVH-------SSALCGGTHVSSTGEIMLLYIV 711 A A GA AL G KY D VRVVS+ GG H S LCGGTHV TG+I + IV Sbjct: 637 ARAQGAMALFGEKYGDEVRVVSM----GGPHGELDRDYSIELCGGTHVRRTGDIGVFKIV 692 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE ++ AG+RRIEA+TG A++ L +D L AS LKV V RV + EE RK++ Sbjct: 693 SEGAVAAGVRRIEALTGTGAKAWLSERDHLLTEAASVLKVKPDEVPARVATLVEERRKME 752 Query: 772 LIHAKRKLQLNVEDLS-------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 A + Q+ + + +A V + ++ + +K+LK + D L+K++ SG+ Sbjct: 753 RELADLRRQVAMGGGAKADGGNEAKDVAGVKLAARVVEGLPAKDLKPMADELKKQVGSGV 812 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++L+ S E KAS++I VT+DL +AVDL R+ A+ LGG GGGGRP MAQ+GGP+ + Sbjct: 813 VVLIA-SNEGKASIVIGVTDDLTGSLSAVDLVRVGAEALGGKGGGGRPDMAQAGGPDAS 870 >gi|114800099|ref|YP_761420.1| alanyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444] gi|123322977|sp|Q0BYM3|SYA_HYPNA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114740273|gb|ABI78398.1| alanyl-tRNA synthetase [Hyphomonas neptunium ATCC 15444] Length = 881 Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/906 (50%), Positives = 593/906 (65%), Gaps = 35/906 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ V+ IR TFL FF+KNGH PS+ L+P NDPTL+F N+GMVPFKNIFTG EKP Sbjct: 1 MNGVNDIRETFLGFFEKNGHARRPSAPLVPQNDPTLLFVNAGMVPFKNIFTGAEKPFAPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A+ LAW+L+TKE+ L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAVALAWELVTKEYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY EDEEA +WKK++GL +IIRI T+DNFWSM +TGPCGPCSEIFFD G Sbjct: 121 DAKRLLVTVYAEDEEAPAIWKKVAGLDDSRIIRIATSDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + GG PGS E+G+R+IEIWNLVFMQFEQ +R LPK SIDTGMGLER+A VLQ Sbjct: 181 DKVAGGPPGSPDEDGDRFIEIWNLVFMQFEQHEGGKRTNLPKPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLF+ LI A E+V G K G+ + RVI DHLR+S+FL+ADGILP+NEGRGY Sbjct: 241 VHNNYDIDLFRALIAAEEEVYGQKASGDKTASFRVIADHLRTSAFLVADGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +LG EP M L+PAL EMG AYPEL +A++ IE + E+ RF Sbjct: 301 VLRRIMRRAMRHGHMLGAREPQMHRLVPALVAEMGKAYPELGRAQVAIEAAIEQEEARFQ 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL LLD S L E L GDVAF+L DT G PLD+ QDIL RG+ +D+ F Sbjct: 361 RTLGNGLSLLDKAASELSPGEALPGDVAFRLSDTFGFPLDLTQDILRGRGIE-VDVDGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 AL+ QR +RA G TE+IWFS++++ G T+F GY G E R + Sbjct: 420 TALDAQRETSRAGGFSSGDQATEEIWFSVRDEKGPTKFTGYSSTAG-----EGRLI---- 470 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538 AI G ++E +G E+VFD TPFYAE+GGQ GD G DG Sbjct: 471 --------------AIAAGGALIETVTAG-PAELVFDATPFYAESGGQAGDHGEIVFEDG 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R + DVQK+A + VH + G ++T M ++++ R+ + NHSATHL+H AL Sbjct: 516 ARFVVRDVQKRAGDLHVHIGELVSGSVKTGMKAQMSVNAARRKAVMANHSATHLMHAALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + D RFD +H P+T+A+L++IED VN I N+ ++ + Sbjct: 576 KVLGPHVTQKGSLVEADRFRFDFSHGAPVTAAQLEAIEDEVNAQIRANIETGIKVTTPDK 635 Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 AI +GA AL G KY D VRV+S+ E G +S LCGG HVS +G+I + I+SE + Sbjct: 636 AIEAGALALFGEKYGDEVRVLSMGDAGEGGRPYSVELCGGIHVSRSGDIAVFTILSEGGV 695 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AGIRRIE TG A ++L G+ + +A LKV ++ RV + EE R L +L Sbjct: 696 SAGIRRIEGATGAEALAYLKGRAQIAADVAESLKVPLKDLPRRVASLTEERRTLERELSE 755 Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 AKRKL + + I VN ++ + V KEL++++D + KI S +++ Sbjct: 756 AKRKLAMGGGGGAPAGPEVINGVNLIARVAEGVGGKELRALVDEAKSKIGS-GVVVFVGV 814 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 KA V I VT+DL ++F+AV+L + +A +GG GGGGRP MAQ+GGP+G+KA++A+ Sbjct: 815 DGGKAGVAIGVTKDLTEKFSAVELVKAAAAAIGGQGGGGRPDMAQAGGPDGDKANEALEA 874 Query: 892 VASFLK 897 V + LK Sbjct: 875 VRAALK 880 >gi|83594150|ref|YP_427902.1| alanyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170] gi|123525949|sp|Q2RQI0|SYA_RHORT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83577064|gb|ABC23615.1| alanyl-tRNA synthetase [Rhodospirillum rubrum ATCC 11170] Length = 883 Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/891 (49%), Positives = 596/891 (66%), Gaps = 35/891 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS S IR TFL+FF KNGH+ + SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MSTTSEIRRTFLDFFVKNGHQEVASSPLVPLNDPTLMFTNAGMVQFKNVFTGAETRPYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW L+T+E+ L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIDFAWRLITEEYAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TV+ DE+A LW+K++GL ++IIRI TNDNFW+M +TGPCGPCSEIFFD G Sbjct: 121 PKDRLLVTVHTSDEDAAGLWRKVAGLPDERIIRIPTNDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS++E G+R+IEIWNLVFMQFEQ +R LP+ SIDTGMGLER+A VLQ Sbjct: 181 PKVAGGPPGSADENGDRFIEIWNLVFMQFEQLTVDQRVALPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDL + LI+A G +G + V+HRVI DHLRS+ FLIADG+LP+NEGRGY Sbjct: 241 KHDNYDIDLMRALIEAIASAAGTDPDGPHKVSHRVIADHLRSACFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G +PLM L+PAL EM +PEL +A LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHMMGCVDPLMFKLVPALNREMADQFPELNRANALITETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 + LDRGL LL L + L G VAFKLYDT+G PLD+ QD L RG+ G+D F+ Sbjct: 361 QMLDRGLKLLAEETGDLASGDSLPGPVAFKLYDTYGFPLDLTQDALRPRGI-GVDTAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR AR G G TE +WF ++++ GA++F+GY Sbjct: 420 AAMARQREDARKSWTGSGDHATEAVWFDIRDRVGASEFLGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538 T+ +IV A+V G++VE A + +V V+ +QTPFY E+GGQ+GD G + +G Sbjct: 461 ---TSTDAEGAIV-ALVVDGKVVESAPADTEVAVIANQTPFYGESGGQMGDAGEIRLAEG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ + D KK + VH VE +R + +D + R L +HSATHLLH AL Sbjct: 517 GKVVVRDTAKKLGALHVHIGRVEGATIRVGQAARFVVDTERRDALRSHHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS + PD LRFD++H KP+++AE++ +ED+VN I N + T+IM+ + Sbjct: 577 RRLGEHVTQKGSLVAPDRLRFDISHPKPLSAAEIRVVEDDVNREIRANAEITTQIMDPDS 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSESS 715 AI +GA AL G KY + VRVVS+ + G + S LCGGTH TG+I I+ E + Sbjct: 637 AIEAGAMALFGEKYGEEVRVVSMGRREPGANRPFSVELCGGTHARRTGDIGFFKIIGEGA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773 + +G+RRIEA+TGQ A H+ QD+ + A LKV+ ++ GR++ + ++ R+L+ L Sbjct: 697 VASGVRRIEAVTGQAAFEHIEAQDDLVSGAAQLLKVTPADLPGRIQALLDDRRRLERDLA 756 Query: 774 HAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A+RKL + + ++N ++ ++ +V +K+LK ++D ++K++ SG++ L+ + Sbjct: 757 DARRKLATGGGGAAAPAVVEINGVKWVGRLLEDVPAKDLKGMVDEVKKQLGSGVVALIAV 816 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + + KAS+++ VTEDL+ RF+AV L R A +GG GGGGRP MAQ+GGP+ Sbjct: 817 A-DGKASLVVGVTEDLVGRFDAVALVRAGAGAIGGKGGGGRPDMAQAGGPD 866 >gi|114569559|ref|YP_756239.1| alanyl-tRNA synthetase [Maricaulis maris MCS10] gi|122316388|sp|Q0AQY6|SYA_MARMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114340021|gb|ABI65301.1| alanyl-tRNA synthetase [Maricaulis maris MCS10] Length = 884 Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/907 (48%), Positives = 601/907 (66%), Gaps = 36/907 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+++ IR TFL++F K+ HE++PS+ L+P +DPTL+F N+GMVPFKN FTGQEK Sbjct: 1 MASLRDIRATFLDYFAKHEHEVVPSAPLVPQDDPTLLFVNAGMVPFKNSFTGQEKRASLR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T EF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAISHAWNLVTGEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY EDE+A LW+KI+GL+ D+II I+T+DNFWSM +TGPCGPCSEIFFD G Sbjct: 121 PAEKLLVTVYAEDEQARALWRKIAGLTDDRIIGISTSDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R+IEIWNLVFMQ+EQ ER LPK SIDTGMGLER++ +LQ Sbjct: 181 PSIAGGPPGSPDEDGDRFIEIWNLVFMQYEQLGPDERINLPKPSIDTGMGLERISAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K NNY+ DLF++LI A E V G+K EG+ + +HRVI DHLRS+ FL+ADG+ P+NEGRGY Sbjct: 241 KHNNYETDLFRNLIAAGESVLGVKAEGDALASHRVIADHLRSTCFLMADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EP+M L+ AL +EMG AYPEL +A+ L+EETL+ E+ERF Sbjct: 301 VLRRIMRRAMRHAHLLGAGEPVMWKLVDALKSEMGDAYPELERAQALLEETLQVEEERFQ 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL LL+ + +G+ + L G AFKLYDT+G PLD+ QD L A+G+ +D FN Sbjct: 361 RTLGRGLSLLEEATADMGEGDALAGATAFKLYDTYGFPLDLTQDALRAKGMT-VDEAGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+++QR+ ARA G + +WF++++K GAT F GY Sbjct: 420 SAMDKQRADARASKFSSGDAAPDAVWFAVRDKVGATAFTGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538 G + AIV G+ + SGQ+ E+VFD+TPFY E+GGQ GDTG DG Sbjct: 461 ----AGTGGKGRLTAIVSGGQEAKALGSGQRAELVFDETPFYGESGGQCGDTGEIRFVDG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + D QK+ + H ++ +G + L D R + NHSATHL H AL Sbjct: 517 AVFTVEDTQKRGGDMHAHIGVLTKGEITLGDVAALDADAPRRAAIRANHSATHLAHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG+HV+Q GS + PD LRFD +H+K +++ ++ +IE VN +I QN+PV TR M + Sbjct: 577 DVLGAHVTQKGSHVGPDRLRFDFSHNKSVSADQIAAIEAQVNAVIRQNVPVSTREMTPDA 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 AI +GA AL G KY D VRV+++ + +S LCGGTHV TG+I L I++E++ Sbjct: 637 AIEAGALALFGEKYGDTVRVLAMGQGLADHATPYSVELCGGTHVERTGDIALFKIIAETA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + +GIRRIEA+TG+ AR ++ Q ++ A LK ++ RV + +E RKL QL Sbjct: 697 VSSGIRRIEAMTGEGARLYMDEQIGFGRAAADALKTPPSDLATRVAALVDERRKLERQLA 756 Query: 774 HAKRKL----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 AK++L + I VNF+ ++ V K+L+ ++D + ++ SG+ +G Sbjct: 757 EAKKQLAMGGGASGAPAGPETINGVNFIGRVVEGVGGKDLRGLIDEAKAQMGSGVAAFIG 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + KA++ + VT+DL DRF AVDL + A +GG GGGGRP AQ+GGP+G KA+ + Sbjct: 817 VN-DGKAALAVGVTDDLKDRFVAVDLVKAGAAAVGGKGGGGRPDFAQAGGPDGAKANDGL 875 Query: 890 AGVASFL 896 A + + L Sbjct: 876 AAIRAAL 882 >gi|197104453|ref|YP_002129830.1| alanyl-tRNA synthetase [Phenylobacterium zucineum HLK1] gi|196477873|gb|ACG77401.1| alanyl-tRNA synthetase [Phenylobacterium zucineum HLK1] Length = 880 Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/905 (48%), Positives = 595/905 (65%), Gaps = 36/905 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IRT FL+FFQ+ H ++PS+ L+P NDPTL+F N+GMVPFKN FTG E + Sbjct: 1 MASLNEIRTHFLDFFQRKEHAVVPSAPLVPQNDPTLLFVNAGMVPFKNYFTGAEASPWPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI AW+LLTKE+ L Sbjct: 61 AASSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAISHAWELLTKEWAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TVY D+EA LWKKI+GL KI+RI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PVEKLMVTVYHTDDEAAALWKKIAGLPDHKIVRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E IPGG PGS E+G+R++EIWNLVFMQFEQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 EHIPGGPPGSPDEDGDRFVEIWNLVFMQFEQFADGTRADLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIV-NHRVIVDHLRSSSFLIADGILPANEGRG 298 +NYD+DLFK LI +++ ++ EG++ +HRVI DHLRSSSFLIADG+LP+NEGRG Sbjct: 241 VHDNYDVDLFKDLIASTK--AQLRAEGSDTTPSHRVIADHLRSSSFLIADGVLPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRIMRRAM +A LLG EPLM + P L MG AYPEL +A+ I ETLR E+ERF Sbjct: 299 YVLRRIMRRAMRHAHLLGADEPLMHRVAPTLVNLMGEAYPELRRAEPAIVETLRQEEERF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TL RG+ LL+ + L ++L+G+ AFKLYDT+G PLD+ QD + A+GL +++ F Sbjct: 359 RRTLGRGMTLLEEATAGLKDGDVLSGETAFKLYDTYGFPLDLTQDAVRAKGLT-VNLDEF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 QA+ QR AR + +G G WFS++++ G + F GYD Sbjct: 418 EQAMARQREMARENWVGSGQVAAAAEWFSIRDRLGPSDFTGYD----------------- 460 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + +V +G+ +E A +GQ+V+ +FD+TPFYAE+GGQ GD G G Sbjct: 461 ------NTEATGELLVLVSEGQEIERAGAGQRVQALFDRTPFYAESGGQAGDQGEVEWQG 514 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R ++TDVQK+A + VH + G L + L +D + R NHSATHLLH AL Sbjct: 515 GRARVTDVQKQAGDLHVHDLEILEGELVPGARVRLAVDAERRASTRSNHSATHLLHAALR 574 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q G + + +RFD +H +P+T+ E++ IE VN ++ QNLP T+ M ++ Sbjct: 575 NVLGKHVTQKGQMVDGERIRFDFSHGQPLTAEEIERIEAEVNAVVRQNLPAQTKNMRPQE 634 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE-DG-GVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 AI +GA AL G KY D VRV+++ DG G +S LCGGTHV+ TG+I L IVSE + Sbjct: 635 AIDAGAMALFGEKYGDSVRVLTLGRALDGEGDYSVELCGGTHVARTGDIALFKIVSEQGV 694 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RRIEA+TG+ AR +L+ Q KSLA KV V R+E + + RKL +L Sbjct: 695 AAGVRRIEALTGEAARRYLLEQASVAKSLAEQFKVPVSEVSARIEALQAQARKLEKELAD 754 Query: 775 AKRKLQLNVEDLSC---HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 AKR+L + + +I V M+ ++ V K+L+ + + +K++ G+I LVG++ Sbjct: 755 AKRQLAMGGGGGAAAGPEEIGGVKVMARVMEGVGGKDLRPIAEEFKKQLPDGVIALVGVA 814 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + KA+V + VT +FNA +LA+ + +GG G GGRP AQ G P+ +KA + +A Sbjct: 815 -DGKAAVTVAVTGSATAKFNAAELAKAAVLAMGGQGAGGRPDFAQGGAPDASKAAEGLAA 873 Query: 892 VASFL 896 V + L Sbjct: 874 VKALL 878 >gi|144899258|emb|CAM76122.1| Alanyl-tRNA synthetase [Magnetospirillum gryphiswaldense MSR-1] Length = 881 Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/904 (50%), Positives = 599/904 (66%), Gaps = 33/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++IR FL++F KNGHE++ SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MQTANTIRRAFLDYFAKNGHEVVSSSPLVPRNDPTLMFTNAGMVQFKNVFTGVEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI LAW+L+TKEF L Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAIALAWNLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY +D+EAF +WKK++G S D+IIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 AKDKLLVTVYHDDDEAFNIWKKVAGFSDDRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS ++G+R+IEIWNLVFMQFEQ +KQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 DKIAGGPPGSPDQDGDRFIEIWNLVFMQFEQVDKQTRLPLPKPSIDTGMGLERLAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYD+DL + LI+AS + +G V+HRV+ DHLRSS FLIADG+LP+NEGRGY Sbjct: 241 QHDNYDVDLLRALIEASAHESNTDADGPYKVSHRVVADHLRSSCFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A L+G TEPL+ L PAL +MG AYPEL +A LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLMGCTEPLLWRLFPALAKQMGEAYPELGRAGALITETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLD+GL LLD L+HL L G+VAFKLYDT+G PLD+ +D L A+G+ G+D F Sbjct: 361 ATLDKGLKLLDDELTHLVPGAKLAGEVAFKLYDTYGFPLDLTEDALKAKGI-GVDTDGFA 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR+ AR G G TE +WF +KEK GA++F+GYD + Sbjct: 420 TAMDRQRAEARKAWSGSGEAATETLWFEIKEKTGASEFLGYDAI---------------- 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGD 537 G + A+V+ G+ VE G +V VV +QTPFY E+GGQ+GDTG G Sbjct: 464 -------GAEGQIVALVEGGKAVEAVHPGHEVMVVANQTPFYGESGGQMGDTGIISVAGG 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 R+ +TD KK + VH VE G + +D R +HSATHLLH AL Sbjct: 517 KARIVVTDTLKKLGDLIVHVGKVEGGPVAVGEDAHFAVDETRRDATRGHHSATHLLHQAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 LG HV+Q GS + PD LRFD H K +++ E++ +E VN I +N VVT++M+ + Sbjct: 577 RDALGEHVTQKGSQVGPDRLRFDFAHPKGLSTDEIRLVEAEVNRQIRKNRAVVTKLMSPD 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESS 715 DAI +GA AL G KY + VRVVS+ +D S LCGGTHV G+I I+SES+ Sbjct: 637 DAIEAGAMALFGEKYGEEVRVVSMGGDDSRPNPFSVELCGGTHVRRVGDIGGFKILSESA 696 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RR+EA+TG + Q+E L A LK + + R+ ++ E+ RKL+ + Sbjct: 697 VAAGVRRVEAVTGPAFLAWANEQEELLARAAQALKAAPAELPARIAQLVEDRRKLERELS 756 Query: 776 KRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + + QL + +N + ++ V +K+LK + D ++K+I SG+++LV + Sbjct: 757 ETRKQLATGGGAGAATTQINGITYAGRVLDGVPAKDLKGMADEIKKQIGSGVVVLVS-ND 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 KASV++ VT+DL + +AVDL R+ ++ +GG GGGGRP MAQ+GGP+ +KA A+ + Sbjct: 816 GGKASVVVAVTDDLTAKHSAVDLVRIGSEAVGGKGGGGRPDMAQAGGPDADKAQDAVDKI 875 Query: 893 ASFL 896 A+ L Sbjct: 876 AAAL 879 >gi|58040217|ref|YP_192181.1| alanyl-tRNA synthetase [Gluconobacter oxydans 621H] gi|81556989|sp|Q5FQ21|SYA_GLUOX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|58002631|gb|AAW61525.1| Alanyl-tRNA synthetase [Gluconobacter oxydans 621H] Length = 879 Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/889 (48%), Positives = 582/889 (65%), Gaps = 31/889 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR+ FLE+F GH ++PS+SL+P NDPTL+FTN+GMVPFKN+FTGQE Y Sbjct: 1 MTSTNDIRSAFLEYFGSQGHRIVPSASLVPQNDPTLLFTNAGMVPFKNVFTGQETRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK AI+ AW LLT++F L Sbjct: 61 ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWTLLTRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY EDE+A LWKKI+GLS D+IIRI T+DNFW M +TGPCGPCSEIF+D G Sbjct: 121 PKDKLLATVYAEDEDAADLWKKIAGLSDDRIIRIGTSDNFWRMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + GG PGS E+G+R++EIWNLVFMQF Q R LP+ SIDTGMGLER A ++Q Sbjct: 181 DSVFGGPPGSPDEDGDRFVEIWNLVFMQFLDQPDGSRDALPRPSIDTGMGLERFAAIMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI+AS ++ +G +HRV+ DHLRS++FLIADG+LP+ EGRGY Sbjct: 241 KRDNYDTDTMRALIEASAEIMHQDADGPFKASHRVVADHLRSTAFLIADGVLPSKEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + ++G EP+ LLPAL +MG+AYPEL+Q + LI +T++ E+ERF Sbjct: 301 VLRRIMRRAMRHLHIMGAKEPVFYRLLPALIQQMGAAYPELVQHQALIAQTMKGEEERFT 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+RGL LL L LG E L GDVAFKLYDT G PLD+ QD L +G +D F Sbjct: 361 ALLERGLTLLSDELDRLGDKEALPGDVAFKLYDTFGFPLDLTQDALREKGRT-VDEAGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR RARA +G G E +WF ++K+G ++F+GY Sbjct: 420 TAMAEQRKRARAAWVGSGDAAAETVWFDARDKHGPSEFLGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ + V+ I + + + A +G V ++ +QTPFY E+GGQ+GD G G Sbjct: 461 ----VSEKADAEVQGIFRGNDELASAPAGDDTVAILLNQTPFYGESGGQVGDHGTLTAPG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +R++ITD QK+ + VH+ V G L+ M++ ID+ R + +HSATHLLH AL Sbjct: 517 VRVEITDTQKRNGDLIVHYGKVVEGTLKPGMAVHAEIDHARRTAVRGHHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +G+HV+Q GS P+ LRFD++ +P+T EL ++E VN I +N PV TR+M +E+ Sbjct: 577 RQIGTHVTQKGSLNAPERLRFDISQPRPLTDEELAAVEAEVNARIRENAPVETRLMTQEE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A+A GA AL G KY D VRVVS+ +D +S LCGGTHV GEI IVSES + Sbjct: 637 AVAEGAMALFGEKYGDEVRVVSMGKGDDDRPAYSIELCGGTHVGRVGEIGPFRIVSESGV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RRIEA+ G A + + + +LK +A LKV + RV + EE + L Q+ Sbjct: 697 SAGVRRIEAVCGLAAEALALETESRLKQIADLLKVPVADAASRVAALLEERKSLTAQVSD 756 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +RKL + I + + + +V KELK + +++ K+I SG++ L+ S + Sbjct: 757 LQRKLATGEGTSATESINGITLSARDLGDVSPKELKGLAESISKQIASGVVALMS-SADG 815 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 + S++I VT+DL DR +AV L R ++ ++GG GGGGRP MAQ+GGPN + Sbjct: 816 RGSIVIAVTKDLTDRLDAVKLVREASALMGGKGGGGRPDMAQAGGPNAD 864 >gi|85374371|ref|YP_458433.1| alanyl-tRNA synthetase [Erythrobacter litoralis HTCC2594] gi|122544241|sp|Q2N9K5|SYA_ERYLH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|84787454|gb|ABC63636.1| AlaS, alanyl-tRNA synthetase [Erythrobacter litoralis HTCC2594] Length = 887 Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/903 (49%), Positives = 601/903 (66%), Gaps = 36/903 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + IR +FL++F GH + S+ L+P NDPTLMF N+GMVPFKN+FTG E P Sbjct: 1 MQSTNDIRRSFLDYFTGAGHAEIASAPLVPYNDPTLMFVNAGMVPFKNVFTGLETPPAPT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI+ AW LLT+E+ + Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIEHAWTLLTREWGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RL TVY D+EA+ W+KI+GL ++IIRI T DNFW+M + GPCGPCSEIFFD G Sbjct: 121 DAARLTATVYHTDDEAYDFWRKIAGLPEERIIRIATKDNFWAMGDDGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++E+WNLVFMQ EQ + LP +IDTGMGLER+A V+Q Sbjct: 181 DHIFGGPPGSPEEDGDRFVEVWNLVFMQHEQTGGEITGDLPNKNIDTGMGLERIAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI ASE +TG+K EG+ +HRVI DHLRS+SFLIADG+LP++EGRGY Sbjct: 241 VHDNYDTDTFKELIGASEGLTGVKAEGDQAASHRVIADHLRSTSFLIADGVLPSSEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +EPLM L+PAL TEMG AYPEL + + LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGASEPLMHRLVPALVTEMGQAYPELTRGQALIEETLEREEARFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LLD + + + L+G+ AFKLYDT+G P D+ +D L RG+A +D F Sbjct: 361 QTLEKGLRLLDDATGDMSEGDTLDGETAFKLYDTYGFPYDLTEDALRPRGIA-VDETGFA 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ARA G G ++WF + E+ GAT+F GY Sbjct: 420 SAMQRQKDAARAAWKGSGQAADSEVWFDIAEREGATEFTGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDG 538 T+G +V A+V+ G+ V+ A +G +V ++ +QTPFY E+GGQ GD G + DG Sbjct: 461 ---TSTSGEGRVV-ALVKNGKEVDSASAGDEVVILTNQTPFYGESGGQTGDAGTMSTPDG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++++TD K + H A ++ G + +L L +D R ++ NHSATHL+H AL Sbjct: 517 VKVEVTDTGKPLGRLHTHQAKIQSGTVLKGDTLHLDVDVDRRDRVRANHSATHLVHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS + D LRFD +H KP++ ++ +IE VN+ I N V TR+M+ +D Sbjct: 577 NRLGEHVTQKGSLVAEDRLRFDFSHPKPLSEDDIAAIEAEVNEEIRANETVTTRLMSPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A+ +GA AL G KY + VRV+S+ ++G +S LCGGTHV +TG+I L I+SES++ Sbjct: 637 AVDAGALALFGEKYGEEVRVLSMGRRSKEGRNYSVELCGGTHVRATGDIQLFRIISESAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEA+TG AR L+ ++E LKS AS L+ + V RV + +E + L +L Sbjct: 697 SSGVRRIEALTGDAARQWLVRREEALKSAASALRTNPEEVAERVAALLDERKALEKELAD 756 Query: 775 AKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+++L L V I DV F +I+ ++ K+L+ ++D ++++ SGI + Sbjct: 757 ARKQLALGGGGSQVAQSQDETIGDVTFSGQVINGLNPKDLRGLLDEAKQRMGSGIAAICA 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E KA+ VT+DL DR+NAVDL R +VLGG GGGGRP MAQ GGP+G KA+ A+ Sbjct: 817 VN-EGKAAFAAAVTDDLTDRYNAVDLVRAGVEVLGGKGGGGRPDMAQGGGPDGLKAEAAL 875 Query: 890 AGV 892 V Sbjct: 876 NAV 878 >gi|119383350|ref|YP_914406.1| alanyl-tRNA synthetase [Paracoccus denitrificans PD1222] gi|205830170|sp|A1AZL6|SYA_PARDP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119373117|gb|ABL68710.1| alanyl-tRNA synthetase [Paracoccus denitrificans PD1222] Length = 885 Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/907 (50%), Positives = 596/907 (65%), Gaps = 37/907 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ +R+TFL +F++NGH ++ SS L+P NDPTLMFTNSGMV FKN+FTG E Y+ Sbjct: 1 MPSLNDVRSTFLNYFERNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLTK+F + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDGAIPFAWELLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA +WKK++GLS D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 PKDKLLVTVYHTDDEAADIWKKVAGLSDDRIIRIPTSDNFWQMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS+ E+G+R+IEIWNLVFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 181 EQIWGGPPGSADEDGDRFIEIWNLVFMQNEQFEDGTMRALDMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G V+HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRGLIEASAHATSADPDGPGKVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL EMG+AYPEL +A+ LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVREMGAAYPELGRAQALIEETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L + L G+ AFKLYDT+G PLD+ QD L +G A +D F+ Sbjct: 361 QTLDRGLRLLDDELAKLPEGANLPGEAAFKLYDTYGFPLDLTQDALREKGRA-VDTAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + E++GAT+F+GYD Sbjct: 420 SAMAEQKAKARAAWAGSGETKDAAIWFDIAEEHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +++ G V A+VQ G VEEA GQ+V++V +QTPFY EAGGQ+GDTG + Sbjct: 462 --TEISEGQ---VLALVQDGAAVEEAGEGQQVQIVVNQTPFYGEAGGQVGDTGLIKTETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD KK G+F+H A V G ++ L++D+ R + NHSATHLLH AL Sbjct: 517 AARVTDT-KKTGGVFIHIAEVTLGTIQRGQGAQLSVDHDRRSAIRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +H+K +T EL +E VND I QN PV TRIM +DA Sbjct: 576 ALGEHVAQRGSLNAPDRLRFDFSHAKAMTPEELAQVEREVNDFIRQNSPVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + G +S LCGGTHV+ TG+I + + S Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGELPGSGKGTGGQTYSLELCGGTHVARTGDIGMFALTS 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E++ AGIRRIEA+TGQ A L D +L +A +K G+VV +V + +E + L Sbjct: 696 ETASAAGIRRIEALTGQAAMDELRRVDGELNEIAGIVKAQAGDVVSKVRALADERKALAN 755 Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K QL + S K ++N ++ + V KEL ++D ++ ++ SG ++++ Sbjct: 756 EVAQLKRQLAMGGGSEDKPREINGIKLIARRVEGVSGKELGPLVDEMKSRLGSGAVVVLA 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + KA+V VT DL R +AV+L + + LGG GGGGRP AQ G P+ AD AI Sbjct: 816 -EADGKATVAAGVTPDLTGRISAVELVQTATAALGGKGGGGRPDRAQGGAPSLAAADSAI 874 Query: 890 AGVASFL 896 + V + + Sbjct: 875 SAVETLI 881 >gi|149915205|ref|ZP_01903733.1| alanyl-tRNA synthetase [Roseobacter sp. AzwK-3b] gi|149810926|gb|EDM70765.1| alanyl-tRNA synthetase [Roseobacter sp. AzwK-3b] Length = 887 Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/912 (49%), Positives = 595/912 (65%), Gaps = 41/912 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL FF+KN H+++ SS L+P NDPTLMFTNSGMV FKN+FTG E Y Sbjct: 1 MPTLNDIRSTFLNFFEKNDHQIVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVEHRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AWDLLTK+F + Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EA +WKK +GL ++IIRI T+DNFWSM TGPCGPC+EIF+D G Sbjct: 121 DKSKLLVTVYHTDDEAADIWKKYAGLPEERIIRIATDDNFWSMGATGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS EE G+R+IEIWNLVFMQ E+ + L SIDTGMGLER+ +LQ Sbjct: 181 PHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFEDGTQRDLDMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS +T +G V+HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLLRALIEASANITDGAPDGPGNVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG +P+M L+P+L T+MG AYPEL +A+ LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHQLGAADPVMHRLVPSLVTQMGQAYPELGRAQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L D L G+ AFKLYDT G PLD+ QD L +G + +D+ F+ Sbjct: 361 QTLDRGLRLLDDELDKLASDAPLPGEAAFKLYDTFGFPLDLTQDALREKGRS-VDVAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ+++ARA G G IW+ + E G T F+GYD R Sbjct: 420 EAMSEQKAKARAAWSGSGEAADATIWYDIAEDKGTTDFLGYDTER--------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + A+V+ G+ +E A G++V++V +QTPFYAE+GGQ+GDTG +G Sbjct: 465 --------AEGQIMALVRDGQRIEAASQGEEVQIVLNQTPFYAESGGQVGDTGVVRTEGG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD +K A G+F+H A V G + + L +D+ R + NHSA HLLH AL Sbjct: 517 AARITDTRKVA-GVFLHVAEVTEGRIVAGEAAQLEVDHTRRTAIRANHSAMHLLHEALRE 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +H+K +++ EL+ +E +VN I QN V TRIM +DA Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHAKALSAEELERVEADVNGFIRQNASVDTRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + DG +S LCGGTHV TG+I + + Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGKLDGSGKGSDGRTYSIELCGGTHVRQTGDIGVFVVTG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 + + AG+RRIEA+TG+ AR +L Q ++ +LA+ LK +VV RV+ + +E ++L Sbjct: 696 DQASSAGVRRIEALTGEAARQYLSAQAHRVDALAAELKARPDDVVTRVKALMDERKQLAN 755 Query: 771 QLIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 ++ +R+L + + +I V F++ ++ V K+L +++D + ++ SG + Sbjct: 756 EVAQLRRELAMAGGAGQGDGPEMREIGGVPFLAQVLRGVSGKDLPAIIDEHKARMGSGAV 815 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L+ + KA+V VT+DL R +AVDL R + VLGG GGGGRP MAQ GGP+ A Sbjct: 816 LLIA-DADGKAAVAAGVTQDLTGRVSAVDLVRAAVPVLGGKGGGGRPDMAQGGGPDAGNA 874 Query: 886 DQAIAGVASFLK 897 + AI L+ Sbjct: 875 EAAIKAAEQILE 886 >gi|85708967|ref|ZP_01040033.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. NAP1] gi|85690501|gb|EAQ30504.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. NAP1] Length = 887 Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/910 (49%), Positives = 606/910 (66%), Gaps = 38/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL+FF H + S+ L+P NDPTLMF N+GMVPFKN+FTG E P Sbjct: 1 MTSTNDIRRSFLDFFASEDHVEVQSAPLVPHNDPTLMFVNAGMVPFKNVFTGLETPPGPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTKE+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAILNAWTLLTKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L TVY D+EAF LW+KISGL ++IIRI T DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 APEKLTATVYHTDDEAFDLWRKISGLPEERIIRIATADNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E IPGG PGS E+G+R+IEIWNLVFMQF+Q R LP SIDTGMGLER+A V+Q Sbjct: 181 EHIPGGPPGSPDEDGDRFIEIWNLVFMQFDQAADGTRRDLPSPSIDTGMGLERIAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI ASE +T + G N +HRVI DHLRS+SFL+ADG+LP+NEGRGY Sbjct: 241 VHDNYDTDTFKALIAASENLTEVPASGENTASHRVIADHLRSTSFLMADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +EPLM L+PAL +EMG AYP L + + LIEE L E+ +F Sbjct: 301 VLRRIMRRAMRHAHLLGASEPLMHRLVPALVSEMGQAYPGLQRGQSLIEEVLLREETQFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLD+GL LLD + + L+G+ AFKLYDT+G P D+ +D L ARG++ +D F+ Sbjct: 361 KTLDKGLKLLDEATGSMSEGGELDGETAFKLYDTYGFPYDLTEDALRARGIS-VDRGGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ Q++ ARA G G +++IWF + E+ GAT+F GY Sbjct: 420 EAMARQKAAARAAWKGSGEAASDEIWFDIAEREGATEFTGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDG 538 T+G ++V A+V+ G V+ A +G +V V+ +QTPFY E+GGQ GDTG + G Sbjct: 461 ---STTSGEGTVV-ALVKDGAEVDSASAGDEVVVLTNQTPFYGESGGQTGDTGTISTPTG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +TD K + H A + G ++ ++ L +D + R Q+ NHSATHL+H AL Sbjct: 517 LAADVTDTSKPLGRLHAHQARITAGKVKVGDNVQLDVDAERRTQIRANHSATHLVHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS ++ + LRFD +H KP+++ ++ +IED VN I N PV TR+M+ +D Sbjct: 577 NQLGDHVTQKGSLVSQERLRFDFSHPKPLSAEDIVAIEDEVNAEILANEPVGTRLMSPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A+ +GA AL G KY D VRV+S+ G +S LCGGTHVS+TG+I L IVSE ++ Sbjct: 637 AVEAGALALFGEKYGDEVRVLSMGRSGGSGRNYSVELCGGTHVSATGDIGLFRIVSEGAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEA+TG AR+ L+ ++E LKS+A ++ + V RV + +E ++L +L Sbjct: 697 SSGVRRIEALTGDAARNWLVAREEALKSVAGAIRATPEEVPARVAALLDERKRLEKELAE 756 Query: 775 AKRKLQLNVEDLSC-------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 AK+ L L ++A V F ++ ++ KEL+ ++D + ++ +G+ + Sbjct: 757 AKKALALGGGGSGGGPAASADEQVAGVAFSGQVLEGLNPKELRPLLDEAKARLGTGVAAI 816 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 V ++ + KAS+ VT+DL D+F+AVDL R + LGG GGGGRP MAQ GGP+G+KA + Sbjct: 817 VAVN-DGKASIAAAVTDDLTDKFSAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGSKAAE 875 Query: 888 AIAGVASFLK 897 AIA V S L+ Sbjct: 876 AIASVKSVLE 885 >gi|146278407|ref|YP_001168566.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025] gi|205830189|sp|A4WV47|SYA_RHOS5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145556648|gb|ABP71261.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17025] Length = 883 Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/889 (50%), Positives = 585/889 (65%), Gaps = 37/889 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 1 MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLT++FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELLTRDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA +WKK++GL D+IIRI TNDNFW M TGPCGPC+EIF+D G Sbjct: 121 PREKLLVTVYHTDDEAASIWKKVAGLPDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS+ E+G+R+IEIWNLVFMQ EQ LPK SIDTGMGLER+ +LQ Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGTGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL + + LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LL+ L L + L G+ AFKLYDT+G PLD+ QD L +G +D+ F Sbjct: 361 QTLDRGLRLLEDELDRLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF L E++GAT+F+GYD Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAERHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + AIV G A GQ V+++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TEKAEGQILAIVAGGVDTASATPGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +ITDV +K +G+F+H A V G +R L +D+ R + NHSATHLLH AL Sbjct: 517 RARITDV-RKGQGLFLHFAEVTEGEIRPGQGAALEVDHARRSAIRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +HSK +++ EL ++E VN I N V TRIM+ +DA Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSKALSAEELATVEAEVNQFIRSNGMVETRIMSPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + DG +S LCGGTHV+ G+I L I+ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGMDGQTYSLELCGGTHVARLGDIGLCVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 +S+ AG+RRIEA+TG+ A +HL Q ++L +A+ LK S +V RV+ + EE R+LQ Sbjct: 696 DSASSAGVRRIEALTGEGALAHLNEQMQRLAEVAATLKASPAEMVDRVKALVEERRQLQN 755 Query: 772 -LIHAKRKLQLNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + +R+ + + K I V F++ I+ V K++ ++D ++ ++ SG ++L+ Sbjct: 756 EVAQLRREAAMGGGAAAEAKDIGGVKFLAQIVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 KA++ VT DL DR +AV L + +A+ LGG GGGGRP MAQ+G Sbjct: 816 -DTAGKAALAAGVTPDLTDRLSAVALVKAAAEALGGRGGGGRPDMAQAG 863 >gi|326387205|ref|ZP_08208815.1| alanyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370] gi|326208386|gb|EGD59193.1| alanyl-tRNA synthetase [Novosphingobium nitrogenifigens DSM 19370] Length = 880 Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/890 (50%), Positives = 590/890 (66%), Gaps = 32/890 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL++F NGHE++PS+ L+P NDPTLMFTN+GMVPFKN+FTG E Sbjct: 1 MTSTNEIRRSFLDYFGSNGHEVVPSAPLVPYNDPTLMFTNAGMVPFKNVFTGLETRAQPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT+E+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTREWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EAF LW+KI+GLS D+IIRI T DNFW+M + GPCGPCSEIF+D G Sbjct: 121 PKDKLLVTVYHTDDEAFGLWQKIAGLSDDRIIRIATKDNFWAMGDDGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS+ E+G+R+IEIWNLVFMQFEQ + LPK SIDTGMGLER+A VLQ Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQFEQTAGEITGNLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYDID F+ LI ASE +TG+K + + +HRVI DHLRSSSFL+ADG+LP+NEGRGY Sbjct: 241 EHDNYDIDTFRALIAASENLTGVKADDAHRASHRVIADHLRSSSFLLADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L+P+L TEMG+AYPEL +A+ LIEE L E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMHRLVPSLITEMGAAYPELGRARALIEEVLEREETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL LLD + + L G+ AF+LYDT+G P D+ +D L ARG++ +D F+ Sbjct: 361 QTLANGLKLLDEATDGMDEGAKLPGETAFRLYDTYGFPYDLTEDALRARGIS-VDRDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q++ ARA G G ++WF + E+ GAT+F GY Sbjct: 420 AAMAQQKAAARAAWKGSGQTADSEVWFDIAERVGATEFTGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T G + +V A+V+ G+ V EA +G V V+ +QTPFY E+GGQ GDTG G G+ Sbjct: 461 ---TATTGEAQVV-ALVKDGKEVTEANAGDAVTVITNQTPFYGESGGQQGDTGTITGPGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 L + D QK + H VE G +R + L ID R L NHSATHLLH AL Sbjct: 517 VLAVGDTQKPLGKLHAHQGTVETGTIRVGDLVRLAIDTARRDALRANHSATHLLHQALRN 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS + + LRFD + +++ ++ IE VN I N PVVTR+M +DA Sbjct: 577 RLGQHVMQKGSLVAGERLRFDFSQPTALSAEDIAVIEAEVNAQIRGNSPVVTRLMTPDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 I +GA AL G KY D VRV+S+ +S LCGGTHV + G+I + IVSES++ +G Sbjct: 637 IEAGAMALFGEKYGDEVRVLSMGGSSDATYSVELCGGTHVRALGDIGVFRIVSESAVSSG 696 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777 +RRIEA+TG+ AR L+G+++ LK A L+ + V RV + EE RKL +L AK+ Sbjct: 697 VRRIEALTGEAARQWLVGREDALKHTAGLLRTTPEEVETRVAALIEERRKLERELAEAKK 756 Query: 778 KLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 L L S +I + F ++ +D KEL+ ++D ++++ SG+ +V ++ E Sbjct: 757 ALALGGGGASPADADEEIGGIKFSGQVLEGLDPKELRGLLDQAKQRLGSGVAAVVAVN-E 815 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 KAS+ VT+DL+ + +AVDL R LGG GGGGRP MAQ GGP+G+ Sbjct: 816 GKASIAAAVTDDLVGKVSAVDLVRAGVAALGGKGGGGRPDMAQGGGPDGS 865 >gi|154248002|ref|YP_001418960.1| alanyl-tRNA synthetase [Xanthobacter autotrophicus Py2] gi|205830288|sp|A7IMR0|SYA_XANP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|154162087|gb|ABS69303.1| alanyl-tRNA synthetase [Xanthobacter autotrophicus Py2] Length = 884 Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/894 (49%), Positives = 597/894 (66%), Gaps = 34/894 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR++F+++F K GHE + SS L+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSSFIDYFVKEGHEAVASSPLVPQNDPTLMFTNAGMVQFKNVFTGVEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+RAI+LAW+L+T+ F+L Sbjct: 61 AATSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDRAIELAWNLVTRTFEL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + RL +TV+ EDEEA+ LWKKI+GLS DKIIRI T+DNFWSM +TGPCGPCSEIFFD Sbjct: 121 PRDRLVVTVFSEDEEAYGLWKKIAGLSDDKIIRIPTSDNFWSMGDTGPCGPCSEIFFDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G ++G+R+IEIWNLVFMQFEQ ER LP+ SIDTGMGLER++ VLQ Sbjct: 181 PNVPGGPPGSPDQDGDRFIEIWNLVFMQFEQLPGGERLALPRPSIDTGMGLERVSAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DL + LI ++T + +G +HRVI DHLR+S FL ADG+LP+NEGRGY Sbjct: 241 VHDNYDTDLMRALIAEVAELTSVNPDGPQKASHRVIADHLRASVFLTADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A+LLG +PLM L+P L EMG AYPE+++A+ L EETL E+ RF Sbjct: 301 VLRRIMRRAMRHAQLLGAKDPLMHRLVPVLVREMGRAYPEIVRAESLAEETLLLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL +L+ + L G+VAFKLYDT+G PLD+ QD L ARG++ +D +F+ Sbjct: 361 RTLERGLSILEEESTGLTSGGQFPGEVAFKLYDTYGFPLDLTQDALRARGIS-VDTTAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q++ ARA G G T+ +WFS++++ GAT+F+GY+ Sbjct: 420 AAMARQKAEARASWAGSGEAATDTLWFSVRDEVGATEFLGYE------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538 T +V A+V+ G +V+ +G+K V+ +QTPFYAE+GGQ+GD G G+ G Sbjct: 462 -----TEKAEGVVAALVRDGAVVDSLAAGEKGLVILNQTPFYAESGGQVGDIGRVSGEGG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + Q+ QKK +FVH VE G L+ +LVL +D+ R + NHSATHLLH AL Sbjct: 517 VAAQVVATQKKLGDLFVHEVKVETGTLKRGTALVLEVDHARRAAVRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + PD LRFD +H KP++ EL +E N + +N PV TRIM +D Sbjct: 577 RVLGDHVAQKGSLVAPDRLRFDFSHPKPLSGGELAEVETIANRFVLRNEPVETRIMAVDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYED--GGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 AI SGA AL G KY D VRVVS+ +D G +S LCGGTHV TG+I L+ ++SES++ Sbjct: 637 AITSGARALFGEKYGDEVRVVSMGTDDGNGAPYSVELCGGTHVKRTGDIGLISVLSESAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--WEEYRKLQLIH 774 +G+RRIEA+T AR HL L A+ LK V RV + + +L Sbjct: 697 ASGVRRIEALTADAARRHLNAASAALAGTAAVLKAPVAEVEARVATLVEERRRLERELAE 756 Query: 775 AKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A++KL + + + D+ ++ + ++ K+LK ++D +K+I SG++ +VG+ Sbjct: 757 ARKKLAMGGGGEASGDAVRTVGDIKLLARRVEGIEIKDLKGLVDEGKKQIGSGVVAIVGV 816 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + KA +++ VT DL+ RF+AV L R+ ++ LGG GGGGRP MAQ+GGP+G K Sbjct: 817 TSDGKAGIVVGVTADLIARFDAVALVRVGSEALGGKGGGGRPDMAQAGGPDGAK 870 >gi|94498454|ref|ZP_01305011.1| alanyl-tRNA synthetase [Sphingomonas sp. SKA58] gi|94422102|gb|EAT07146.1| alanyl-tRNA synthetase [Sphingomonas sp. SKA58] Length = 884 Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/904 (49%), Positives = 601/904 (66%), Gaps = 33/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL++F NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y+ Sbjct: 1 MTSTNDIRRSFLDYFGGNGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLETRPYKT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTKE+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL TVY D+EAF LWKKI+GL ++IIRI T DNFW+M ++GPCGPCSEIF+D G Sbjct: 121 PADRLTATVYHTDDEAFDLWKKIAGLPEERIIRIATKDNFWAMGDSGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQ+EQ+ + LP+ SIDTGMGLER+A V+Q Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPRPSIDTGMGLERVAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 T+NYD D FK LI S ++ +G + +HRVI DHLRS+ FLIADG+LPANEGRGY Sbjct: 241 VTDNYDTDTFKALIAESGALSRTATDGAHKASHRVIADHLRSTGFLIADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G EPLM L+ +L +EMG AYPEL++A+ LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHIIGAKEPLMYRLVSSLVSEMGGAYPELVRAQPLIEETLLREETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+ GL LLD L + L G+ AFKLYDT+G P D+ +D L +RGL +D F+ Sbjct: 361 KTLENGLKLLDEATGDLAEGGTLAGETAFKLYDTYGFPYDLTEDALRSRGLT-VDRAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ++ ARA G G +++IWF + EK G T+FIGY +G Sbjct: 420 AAMAEQKAAARAAWKGSGEKASDEIWFDIAEKAGNTEFIGYATTQG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V AIV+ G + A +G V +V +QTPFY E+GGQ+GD G G Sbjct: 466 ---------EGEVLAIVKDGVNFDSAAAGDTVTIVTNQTPFYGESGGQMGDAGRITTQGG 516 Query: 540 RLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + D K G + HHA +E G ++ ++ L++D R ++ NHSATHLLH AL Sbjct: 517 FVALVDDTAKPLGRVHAHHATIEAGSIKVGDTVHLSVDVDRRDRIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + D LRFD +H + +T A++ +IE +VN + N V TR+M +D Sbjct: 577 KELGAHVTQKGSLVAADRLRFDFSHPEALTHAQIAAIEADVNAQVRHNEEVTTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+A+GA AL G KY D VRV+S+ D +S LCGGTHV +TG+I L IVSES++ + Sbjct: 637 AVAAGAMALFGEKYGDEVRVLSMGRGDDAHYSVELCGGTHVRATGDIALFKIVSESAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776 G+RRIEA+TG+ AR L+ +D+KL+ A+ LK + +V R+ + E+ RKL +L AK Sbjct: 697 GVRRIEALTGEAARLWLVERDDKLRQTAAALKTTPEDVPTRIAALVEQSRKLERELAEAK 756 Query: 777 RKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + L L + KI +++F+ +I +D KEL+ ++D + + SG+ ++ + Sbjct: 757 KALALGGGSAAQTAGPEKIGNIDFLGQVIEGLDPKELRGIVDQNKATLGSGVSAVLAVV- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + +AS+ + VT+DL + +AVDL R + LGG GGGGRP MAQ GGP+G+KA A+ V Sbjct: 816 DGRASIAVGVTDDLKGQISAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGDKATAALDAV 875 Query: 893 ASFL 896 + L Sbjct: 876 KTAL 879 >gi|307292727|ref|ZP_07572573.1| alanyl-tRNA synthetase [Sphingobium chlorophenolicum L-1] gi|306880793|gb|EFN12009.1| alanyl-tRNA synthetase [Sphingobium chlorophenolicum L-1] Length = 884 Score = 846 bits (2185), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/904 (49%), Positives = 601/904 (66%), Gaps = 33/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL++F NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y Sbjct: 1 MTSTNDIRRSFLDYFGANGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLESRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTKE+ L Sbjct: 61 ATSSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L TVY D+EAF LWKKI+GL ++IIRI T DNFW+M ++GPCGPCSEIF+D G Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPEERIIRIPTKDNFWAMGDSGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQ+EQ+ + LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD D FK LI+ S +T +G + +HRVI DHLRS+SFLIADG+LPANEGRGY Sbjct: 241 VHNNYDTDTFKALIEESGALTKTATDGEHQASHRVIADHLRSTSFLIADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G EPLM L+P+L +EMG AY EL++A+ LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHIIGSKEPLMHRLVPSLVSEMGGAYQELVRAQPLIEETLLREETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LLD L + L G+ AFKLYDT+G P D+ +D L +RGL G+D F+ Sbjct: 361 QTLEKGLKLLDEATGDLSEGGTLPGETAFKLYDTYGFPYDLTEDALRSRGL-GVDREGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ++ ARA G G +++IWF + EK G T+FIGY Sbjct: 420 KAMAEQKAAARAAWKGSGEKASDEIWFDIAEKTGNTEFIGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDG 538 T G +V AIV+ G + A +G+ V +V +QTPFY E+GGQ+GD G + G Sbjct: 461 ---SSTQGEGEVV-AIVKDGVNFDSAAAGETVLIVTNQTPFYGESGGQMGDAGTISSQSG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + D K + H A + G ++ ++ L++D R ++ NHSATHLLH AL Sbjct: 517 LVADVEDTAKPLGRLHAHRAKIGAGSIKVGDTVHLSVDVNRRDRIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + PD LRFD +H + +T +++ +IE +VN+ + N V TR+M +D Sbjct: 577 NRLGAHVTQKGSLVAPDRLRFDFSHPEALTHSQIAAIEADVNEQVRHNEAVTTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI +GA AL G KY D VRV+S+ D +S LCGGTHV +TG+I + I+SES++ + Sbjct: 637 AIQAGAMALFGEKYGDEVRVLSMGKGDAHSYSVELCGGTHVRATGDIAIFKIISESAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776 G+RRIEA+TG+ AR L ++++L+ A+ LK + V R+ + E+ R+L +L AK Sbjct: 697 GVRRIEALTGEAARLWLSDREDRLRQSAAALKTTPEEVPARIAALVEQSRRLERELAEAK 756 Query: 777 RKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + L L + K+ VNF+ +I +D KEL+ ++D + + SG+ ++ + Sbjct: 757 KALALGGGGSAQAAGPEKVGAVNFIGQVIEGLDPKELRGLVDQNKATLGSGVSAVLAVV- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 E +A++ + VT+DL+ +AVDL R + LGG GGGGRP MAQ GGP G+KA+ AI V Sbjct: 816 EGRATIAVGVTDDLVGTISAVDLVRAGVEALGGKGGGGRPDMAQGGGPEGDKAEAAIEAV 875 Query: 893 ASFL 896 + L Sbjct: 876 KAAL 879 >gi|310815943|ref|YP_003963907.1| alanyl-tRNA synthetase [Ketogulonicigenium vulgare Y25] gi|308754678|gb|ADO42607.1| alanyl-tRNA synthetase [Ketogulonicigenium vulgare Y25] Length = 868 Score = 845 bits (2183), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/867 (49%), Positives = 568/867 (65%), Gaps = 38/867 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL F+ +NGH ++PSS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 24 MTSLADIRSTFLNFYARNGHTIVPSSPLVPRNDPTLMFTNSGMVQFKNTFTGVETRDYVR 83 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+LLTK+F + Sbjct: 84 ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKESAIPFAWELLTKDFGI 143 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ RL +TVY D+EA +WKK++GLS D+IIRI TNDNFW M TGPCGPC+EIF+D G Sbjct: 144 NKDRLLVTVYHTDDEAANIWKKVAGLSDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 203 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQ R LPK SIDTGMGLER+ +LQ Sbjct: 204 DHIAGGPPGSPDEDGDRFIEIWNLVFMQFEQFEDGSRTGLPKPSIDTGMGLERIGALLQG 263 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G V+HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 264 KHDNYDTDLMRALIEASAHATSNDPDGPGKVHHRVIADHLRSTSFLIADGVMPSNEGRGY 323 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL EMG+AYPEL +A+ LIEETLR+E+ RF Sbjct: 324 VLRRIMRRAMRHAHMLGAKDPVMYRLVPALVREMGAAYPELNRAQALIEETLRAEETRFK 383 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L D L G AFKLYDT+G PLD+ QD L + +D F Sbjct: 384 QTLDRGLRLLDDELGQLPGDAALPGATAFKLYDTYGFPLDLTQDALREKNRT-VDTDGFT 442 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G +WF L E+ G T+F+GYD L+ Sbjct: 443 AAMNEQKAKARAAWAGSGEQADASVWFDLVEQNGTTEFLGYDTLQAE------------- 489 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + G ++E A G +V+VV +QTPFYAE+GGQ+GD G D Sbjct: 490 ---------GQVTAIVAPAGALMERAEIGAQVQVVLNQTPFYAESGGQVGDAGLLRTDTG 540 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++TD +K A G F H V G + VLT+D R Q++ NHSATHL++ AL Sbjct: 541 VIEVTDTKKHA-GAFAHIGTVREGFVAVGQGAVLTVDATRRGQIAANHSATHLVNEALRA 599 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +H+K +++ E+ ++ +VN I QN PV TR+M ++A Sbjct: 600 ALGDHVAQRGSLNAPDRLRFDFSHNKALSADEIAKVQADVNAYIRQNTPVETRVMTPDEA 659 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ DG +S LCGGTHV+ GEI ++S Sbjct: 660 RDLGAQALFGEKYGDEVRVVSMGRLDGSNKGVDKNTYSLELCGGTHVTRLGEIGAFVLLS 719 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +S+ AG+RR+EA+TGQ A HL Q+ L S+AS LK S +VV RV + +E + L Sbjct: 720 DSASSAGVRRVEALTGQAALDHLAAQEAALISVASLLKTSAADVVERVRALVDERKALSN 779 Query: 771 QLIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ +R L + D++ V+ + ++S V K+L +++D+ + ++ SG+++L Sbjct: 780 EVAQLRRDLAMAGGAKNDVAIRDAGGVSLQAQLLSGVTGKDLPALVDSFKSELGSGVVLL 839 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVD 854 + + KA+V VT DL D+ +AV+ Sbjct: 840 IA-DVDGKAAVAAGVTADLTDKVSAVE 865 >gi|148553432|ref|YP_001261014.1| alanyl-tRNA synthetase [Sphingomonas wittichii RW1] gi|205830213|sp|A5V3L0|SYA_SPHWW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148498622|gb|ABQ66876.1| alanyl-tRNA synthetase [Sphingomonas wittichii RW1] Length = 887 Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/896 (50%), Positives = 596/896 (66%), Gaps = 38/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL+ F K GHEL+PS+ L+P NDPTLMF N+GMVPFKN+FTG EK Y Sbjct: 1 MTSTNDIRRSFLDHFAKEGHELVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKERAI LAW L+T + + Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERAISLAWSLITGTWGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TV+ D+EAF LWKKI G+ +IIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 PADRLTVTVFHTDDEAFDLWKKI-GMPDSRIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 IPGG PGS +E G+R++EIWNLVFMQ+EQ +K+ R LP+ SIDTGMGLER+A VLQ Sbjct: 180 AHIPGGPPGSPDEDGDRFVEIWNLVFMQYEQVDKETRIDLPRPSIDTGMGLERIAAVLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI AS ++T G+ +HRVI DHLR+S FL+ADG+LPANEGRGY Sbjct: 240 VHDNYDTDTFKALIAASGELTRTATNGDFKASHRVIADHLRASGFLVADGVLPANEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L+P+L EMG+AYPEL++A+ LIEETL+ E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAAEPLMHRLVPSLVAEMGAAYPELVRAQPLIEETLKLEETRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL GL LLD + ++L G VAFKLYDT G P D+ +D L A+ L G+D F+ Sbjct: 360 QTLANGLRLLDEATGAMKPGDVLPGAVAFKLYDTFGFPYDLTEDALRAQDL-GVDRSGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ++ ARA G G ++++WF + E++G T+F GY G D ++L Sbjct: 419 AAMAEQKAAARAAWKGSGEKASDEVWFDIAEEFGGTEFTGYVSEEG------DGQLL--- 469 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538 AIV+ G+ V EA +G +V +V +QTPFY E+GGQ+GD G G DG Sbjct: 470 --------------AIVKDGQRVAEAKAGDEVVLVTNQTPFYGESGGQMGDAGRITGDDG 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + + D K + H V G +RT +L L +D R ++ NHSATHLLH AL Sbjct: 516 LEIAVEDTAKPLGRVHAHRGTVVSGSVRTGDALHLVVDGDRRTRIRANHSATHLLHAALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LGSHV+Q GS + D RFD +H K +T ++ +IE VN I +N V TR+M + Sbjct: 576 NRLGSHVTQKGSLVAADRFRFDFSHPKALTPEDIAAIEAEVNRHIRENDEVTTRLMTPDA 635 Query: 659 AIASGAAALLGTKYNDRVRVVSV--EYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSES 714 AI +GA AL G KY D VRV+S+ D G +S LCGGTHVS+ G+I L I+SES Sbjct: 636 AIEAGAMALFGEKYGDEVRVLSMGKAGRDLGAKSYSVELCGGTHVSALGDIALFKIISES 695 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 ++ +G+RRIEA+TG+ AR L +DEKLK A+ LK + +V R+ + EE RKL +L Sbjct: 696 AVSSGVRRIEALTGEAARQWLTQRDEKLKEAAAALKTAPDDVPARIAVLVEERRKLEREL 755 Query: 773 IHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 AK+ L L E +A V F+ ++ +D K L+ ++D + + SG+ ++V Sbjct: 756 AEAKKALALGGGSKAEAAGPEDVAGVKFLPQVVDGLDPKGLRGLVDDAKASLGSGVSVIV 815 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++ + +ASV VT DL+DR +AVDL + + LGG GGGGRP MAQ GGP+G+K Sbjct: 816 AVN-DGRASVAAGVTADLVDRISAVDLVKAAVAALGGQGGGGRPDMAQGGGPDGDK 870 >gi|162147971|ref|YP_001602432.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|209542589|ref|YP_002274818.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] gi|161786548|emb|CAP56130.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Gluconacetobacter diazotrophicus PAl 5] gi|209530266|gb|ACI50203.1| alanyl-tRNA synthetase [Gluconacetobacter diazotrophicus PAl 5] Length = 881 Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/888 (48%), Positives = 582/888 (65%), Gaps = 33/888 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS + IR FL++F NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE Y Sbjct: 1 MSTTNDIRAAFLDYFAANGHQIVPSSSLVPRNDPTLLFTNAGMVQFKNVFTGQETRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK AI+ AW L+T+ F L Sbjct: 61 ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKADAIEFAWTLITRNFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + RL TVY +DEEA LW+K++GL ++IIRI T DNFW M +TGPCGPCSEIFFD Sbjct: 121 PRDRLLATVYADDEEAADLWRKVAGLPDERIIRIGTADNFWRMGDTGPCGPCSEIFFDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + G E+G+R++EIWNLVFMQF + R LP+ SIDTGMGLER A ++Q Sbjct: 181 PDVPGGPPGSPDEDGDRFVEIWNLVFMQFFEDPPGVRSPLPRPSIDTGMGLERFAAIMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI AS + TG +G +HRV+ DHLRS+SFLIADG+LP+ +GRGY Sbjct: 241 KRDNYDTDTMRALILASAEATGQDPDGPFRASHRVVADHLRSTSFLIADGVLPSKDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + ++G E + L+PAL +MG+AYPEL+QA+ LI ET+R E+ERF Sbjct: 301 VLRRIMRRAMRHLHMMGTRETVFHRLVPALVRQMGAAYPELVQAEALIRETMRGEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA-GIDIISF 418 LDRGL LL + LG + L GDVAFKLYDT G PLD+ QD L RG + +D+ F Sbjct: 361 AMLDRGLALLADETARLGDGQPLPGDVAFKLYDTFGFPLDLTQDAL--RGSSHDVDVTGF 418 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++A++ QR RARA G G TE +WF ++++GA++F+GY Sbjct: 419 DRAMQVQRERARAAWSGSGDSATETVWFEARDRFGASEFLGY------------------ 460 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 T + ++AIV G V EA +G ++ ++ +QTPFY E+GGQ+GDTG G Sbjct: 461 -----ATEQADAEIQAIVTDGRSVTEAPAGTEIALLLNQTPFYGESGGQVGDTGLITAPG 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +R+ +TD QK+ + VH+ V G +R ++ T+D+ R + +HSATHLLH AL Sbjct: 516 LRIAVTDTQKRLGDLMVHYGTVVEGTVRVGQAVTATVDHDRRSAIRAHHSATHLLHEALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS PD LRFD++ +P+T E+ +E VN I +N PVVTR M++E+ Sbjct: 576 RRLGAHVTQKGSLNAPDRLRFDISQPRPLTPEEIADVEAEVNARIRENSPVVTRPMSQEE 635 Query: 659 AIASGAAALLGTKYNDRVRVV--SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A+A GA AL G KY D VRVV +D S LCGGTHV+ TG+I L I SE+ + Sbjct: 636 AVAQGAMALFGEKYGDEVRVVFMGAPEDDRPAWSIELCGGTHVNRTGDIGLFRITSEAGV 695 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AGIRRIEA+TG+ A + +++L +A+ L+VS R+ I +E + + Q+ Sbjct: 696 SAGIRRIEAVTGKSAEQAAVATEQRLGQMAAMLRVSAAEAPERLAVILDERKVMERQISD 755 Query: 775 AKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +RKL D I + F++ + ++ ++ELK + D+L++++ SG++ LV + E Sbjct: 756 LQRKLASGGSDGAQAETINGIGFVARDVGDLPARELKPLADSLRQQVGSGVVALVS-TAE 814 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 K SV++ VT DL DR +AV+L RL++ +GG GGGGR MAQ+GGP+ Sbjct: 815 GKGSVVVAVTSDLTDRLDAVELVRLASAAMGGKGGGGRRDMAQAGGPD 862 >gi|254418413|ref|ZP_05032137.1| alanyl-tRNA synthetase [Brevundimonas sp. BAL3] gi|196184590|gb|EDX79566.1| alanyl-tRNA synthetase [Brevundimonas sp. BAL3] Length = 882 Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/901 (47%), Positives = 571/901 (63%), Gaps = 34/901 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR T+L FF +GHE + S+ L+P NDP+L+F N+GMVPFK+ FTG KP Y Sbjct: 1 MPSLNEIRATYLNFFAADGHEKVHSAPLVPQNDPSLLFVNAGMVPFKDYFTGASKPPYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI AW L+T+EF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEHAIDRAWKLVTQEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY +D+EA +WKK++G DKIIRI +DNFW+M ++GPCGPC+EIF+D G Sbjct: 121 DAKRLLVTVYIDDDEAAAIWKKVTGFGDDKIIRIAGSDNFWAMGDSGPCGPCTEIFWDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+RY+EIWN VFMQFE++N Q LPK S+DTGMGLERM TVLQ Sbjct: 181 DKIAGGPPGSPDEDGDRYVEIWNNVFMQFEKENDQIVRNLPKPSVDTGMGLERMTTVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ DLFK LI ASE T K +G +HRVI DHLRSSSFLIADG+ P+NEGRGY Sbjct: 241 VHSVFETDLFKTLIAASEDATSTKSDGERAASHRVIADHLRSSSFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +MG AYPEL +A+ IE+TL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVAQMGDAYPELARAQPFIEDTLKQEEVRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ L D + ++L+G AF L DT+G PLD+ QD RG + +++ F Sbjct: 361 TTLGRGMALFDTAVQGFKPGDMLDGQTAFTLSDTYGFPLDLTQDEARRRGFS-VNVDGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR R+R H G G W +++++ G T F GYD + G Sbjct: 420 SAMAEQRQRSREHWKGSGQTANTNEWLAIRDRMGPTVFTGYDTIEG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V A++ G VE A +G VE++FD TPFYAE+GGQ GD G G Sbjct: 466 ---------SGEVLALMNGGAPVETAEAGDIVEILFDNTPFYAESGGQTGDQGTLEWPGG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ DV+K A + V A + G L + +D R NHSA HLLH AL Sbjct: 517 EAEVLDVKKHAGDLHVLSAQITAGTLEIGARVAQLVDADKRMTTRANHSAAHLLHTALKN 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG V+Q G + + RFD +H P+T EL +IE VN +I QN+P TR+M ++A Sbjct: 577 VLGPAVAQKGQLVDSERARFDFSHGAPVTEDELAAIEAEVNAVIRQNVPAETRLMAPQEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVE---YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 I +GA AL G KY D VRV+++ D +S LCGGTHV+ TG+I L +V E+ + Sbjct: 637 IEAGAIALFGEKYGDEVRVLTLGRSLVSDNAPYSVELCGGTHVARTGDIGLFKVVQETGV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG+ AR +L Q + ++LA K+ +V GRVE + + L+ A+ Sbjct: 697 AAGVRRIEALTGEAARLYLEAQAKVTRNLARDFKIQTQDVPGRVEALQGSVKTLEKQVAE 756 Query: 777 RKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K QL + S +I + M+ ++ VD K L+ V + +K++ +G++ L+G++ Sbjct: 757 LKKQLALGGGSGAASAPEEIGGIKLMARVLDGVDGKGLRGVAEDFRKQVGTGVVALIGVT 816 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E KA+V + VT DL DR NA DLAR + +GG G GG+P AQ G P+G+KA+ +A Sbjct: 817 -EGKAAVTVAVTSDLTDRVNAADLARTAVIAMGGQGAGGKPDFAQGGAPDGSKAEAGLAA 875 Query: 892 V 892 V Sbjct: 876 V 876 >gi|87199300|ref|YP_496557.1| alanyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444] gi|123489936|sp|Q2G8V0|SYA_NOVAD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|87134981|gb|ABD25723.1| alanyl-tRNA synthetase [Novosphingobium aromaticivorans DSM 12444] Length = 881 Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/891 (49%), Positives = 597/891 (67%), Gaps = 33/891 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FLE+F NGH+++PS+ L+P NDPTLMFTN+GMVPFKN+FTG E Sbjct: 1 MTSTNEIRRSFLEYFGSNGHDVVPSAPLVPYNDPTLMFTNAGMVPFKNVFTGLETRAVPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT+E+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTREWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L TVY D+EAF+LWKKI+GL D+IIRI T DNFW+M + GPCGPCSEIFFD G Sbjct: 121 PKDKLLATVYHTDDEAFELWKKIAGLPEDRIIRIATKDNFWAMGDDGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWNLVFMQFEQ + LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPDEDGDRFIEIWNLVFMQFEQTAGEITGSLPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +NYD D FK LI ASE +T ++ EG++ +HRVI DHLRS+SFL+ADG+LP+NEGRGY Sbjct: 241 EHDNYDTDTFKALIAASESLTSVRAEGDHKASHRVIADHLRSTSFLLADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL EMG+AYPEL +A+ LIEETL E+ +F Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVAEMGAAYPELGRAQPLIEETLLREEVQFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL G+ LLD + LG+ + L GD AFKLYDT+G P D+ +D L ARG+A +D F+ Sbjct: 361 RTLSNGIKLLDEATATLGEGDKLPGDTAFKLYDTYGFPYDLTEDALRARGIA-VDREGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q++ ARA G G ++WF + E+ GAT+F GY Sbjct: 420 AAMAQQKAAARAAWKGSGQAADSEVWFDIAERVGATEFTGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG 538 T G + +V A+V+ G+ V+ A++G V V+ +QTPFY E+GGQ GD G GDG Sbjct: 461 ---TATTGEAQVV-ALVKDGKEVDSAMAGDDVAVIVNQTPFYGESGGQTGDAGTITGGDG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + L ++D K + H+A V+ G ++ + L ID R + NHSATHLLH AL Sbjct: 517 LVLAVSDTAKPLGRLHAHNAKVQSGSVKVGDVVRLDIDVARRDAIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + D LRFD +H +++ ++ +IE VN I N V TR+M+ ED Sbjct: 577 HRLGAHVTQKGSLVAADRLRFDFSHPTALSAEDIAAIEAEVNAEIRANEVVTTRLMSPED 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI +GA AL G KY D VRV+S+ +S LCGGTHV + G+I + IVSES++ + Sbjct: 637 AIEAGAMALFGEKYGDEVRVLSMGRVADKHYSVELCGGTHVRALGDIGVFRIVSESAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776 G+RRIEA+TG+ AR + +++ LK+ AS L+ + +V RV + +E +KL +L AK Sbjct: 697 GVRRIEALTGEGARQWFVAREDALKNTASILRTTPEDVEARVTALMDERKKLERELAEAK 756 Query: 777 RKLQLNVEDLSCHK----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + L L + V F ++ +D K+L+ ++D ++++ SG+ ++V ++ Sbjct: 757 KALALGGGSAKAENADEDVNGVKFSGQVLEGLDPKDLRGLLDQAKQRLGSGVAVIVAVN- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 E KAS+ VT+DL + +AVDL R + LGG GGGGRP MAQ GGP G+ Sbjct: 816 EGKASIAAAVTDDLAGKVSAVDLVRAGVEALGGKGGGGRPDMAQGGGPEGS 866 >gi|5834358|gb|AAD53924.1|AF179611_8 alanyl-tRNA synthetase [Zymomonas mobilis subsp. mobilis ZM4] Length = 888 Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/913 (49%), Positives = 589/913 (64%), Gaps = 41/913 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F F+K + L+P NDPTLMF N+GMVPFKN FTG E Y+ Sbjct: 1 MITTNEIRRSFSRIFRKEWPSDSTIAPLVPQNDPTLMFVNAGMVPFKNTFTGLESRPYKT 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKER I+LAW L+TKE+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKERVIELAWGLITKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RL +TVY DEEAF LW+KI+GL D+II+I T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 DPERLCVTVYHTDEEAFNLWRKIAGLPEDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 IPG + E+G+R++EIWNLVFMQ+EQ N + R LP+ SIDTGMGLER+A+VLQ Sbjct: 181 PEIPGASGLADEDGDRFVEIWNLVFMQYEQVNAETRLNLPRPSIDTGMGLERIASVLQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYD D FK LI AS ++T +G +HRVI DHLR++ FL+ADG+LPANEGRGYV Sbjct: 241 HDNYDTDTFKALIAASGELTHTATDGQFKASHRVIADHLRAAGFLVADGVLPANEGRGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAM +A L+G EPLM L+PAL +EMG AYPEL++AK LIEETLR E+ RF + Sbjct: 301 LRRIMRRAMRHAHLIGAKEPLMYRLVPALLSEMGMAYPELVRAKALIEETLRLEETRFRQ 360 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL GL +L HL + L G VAF+LYDT+G P D+ D L AR L +D F+ Sbjct: 361 TLANGLKILKDETQHLKSGDTLPGAVAFRLYDTYGFPYDLTADALRARNLT-VDQAGFDA 419 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+ EQR ARA G G +++IWF + ++ G T+F GY +G Sbjct: 420 AMAEQRKAARAAWKGSGEKASDEIWFDIADQLGGTEFTGYTAEKG--------------- 464 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-I 539 S + A+++ G+ VE A G + ++ +QTPFY E+GGQ GD G G+ + Sbjct: 465 --------SGQIIALIKDGKRVETAKQGDDITIITNQTPFYGESGGQKGDIGVITGNNDL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ +TD QK I H A +E+G ++ + L +D +R +L NHSATHLLH AL Sbjct: 517 KMTVTDTQKPLGRIHAHIAKIEKGEIKIGDDIQLQVDINHRNRLRANHSATHLLHAALRD 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HVSQ GS ++ + LRFD +H K ++ EL +IE VN I N V TR+M E A Sbjct: 577 QLGQHVSQKGSMVSAERLRFDFSHQKALSDQELAAIEAEVNQQILNNSVVTTRLMTPESA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + +GA AL G KY + VRV+S+ + + S LCGGTHVS+ G+I L +IVSE+ Sbjct: 637 VEAGAMALFGEKYGNEVRVLSMGSCLNDQNEESSWSVELCGGTHVSALGQIGLFHIVSET 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 ++ +GIRRIEA+TG+ AR L+G+D L+ AS LK V R I +E RK Q Sbjct: 697 AVSSGIRRIEAVTGEEARLWLVGRDRLLRETASILKAVPEEVPTRTAAILDERRKCQRSL 756 Query: 775 AKRKLQLNVEDLSC---------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 A +K L + +C K+ +F+ +I ++ K L ++D +K I+SG+I Sbjct: 757 ADQK-ALAFANANCGQGGNNAAPDKLGAYHFIGQVIEGLEPKALLGLIDENKKIIESGVI 815 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L+ ++ E +ASV I V++ L + +AVDL R + + LGG GGGGRP MAQ GGPNGN+A Sbjct: 816 ALITVN-EGRASVAIGVSDSLKGKISAVDLVRKAVETLGGKGGGGRPDMAQGGGPNGNEA 874 Query: 886 DQAIAGVASFLKK 898 QA+ V + L+K Sbjct: 875 AQALEAVKALLEK 887 >gi|329849339|ref|ZP_08264185.1| alanyl-tRNA synthetase [Asticcacaulis biprosthecum C19] gi|328841250|gb|EGF90820.1| alanyl-tRNA synthetase [Asticcacaulis biprosthecum C19] Length = 878 Score = 842 bits (2176), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/903 (49%), Positives = 587/903 (65%), Gaps = 32/903 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR TFL++F +N HE++ SSSL+P NDPTLMFTN+GMV FKN+FTG E Y+ Sbjct: 1 MPSLNQIRQTFLDYFARNDHEVVASSSLVPQNDPTLMFTNAGMVQFKNVFTGAETRPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AW LLTK++ L Sbjct: 61 ATTSQKVVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIEHAWTLLTKDYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + R+ TVY +D+EAF+LWKKI+GL +I RI +DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 NPDRMMATVYIDDDEAFELWKKIAGLPESRIARIAGSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PG+ EE G+R++EIWNLVFMQF+QQ R LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGTPEEDGDRFVEIWNLVFMQFDQQPDGTRVNLPKPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLFK+LI AS + TG+ EG+++ +HRVI DHLRSSSFLIADG+ P+NEGRGY Sbjct: 241 VHNNYDIDLFKNLISASVEATGVAAEGDSLPSHRVIADHLRSSSFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPL+ L P L EMG Y EL +A+ I ETLR E+ERF Sbjct: 301 VLRRIMRRAMRHAYLLGSQEPLLHRLAPTLVAEMGGHYGELKRAEAAIVETLRQEEERFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RG+ LLD + L ++L G+VAFKLYDT+G PLD+ QD + A+GL+ +++ F Sbjct: 361 RTLGRGMTLLDEAVRDLKSGDMLEGEVAFKLYDTYGFPLDLTQDAVRAKGLS-VNVAGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++E Q+ R R G G T WF++KE GA++F GYD L Sbjct: 420 ASMEAQKQRGRDAWTGSGEKATAAEWFAIKEAIGASEFTGYDHLSAQGH----------- 468 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V+AIV GE +EEA++G V +VF+++PFY E GGQ GD G Sbjct: 469 ------------VQAIVLDGETIEEALTGDTVSMVFEKSPFYPEGGGQAGDVGTVDFLHG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + D Q++A + VH + G ++ L +D R+ NHSA HL+H AL Sbjct: 517 KGNVLDTQRQAGDLIVHRIEITEGRVKVGDKAELHVDAGKRKTTRSNHSAAHLVHAALRH 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + + +RFD +H P+T EL IE VN ++ QN T++M E A Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHGGPLTVDELARIEAEVNAVVLQNAAAATKLMTPEAA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV-EYEDG-GVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 I +GA AL G KY D VRV+++ + DG G +S LCGGTHV+ TG+I L IVSES I Sbjct: 637 IEAGAIALFGEKYGDEVRVLALGQALDGQGDYSVELCGGTHVARTGDIALFKIVSESGIA 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775 AG+RRIEA+TG+ AR L+ Q +SLA KV V RVE + E ++L +L A Sbjct: 697 AGVRRIEAVTGEAARQFLLEQAGVARSLADQFKVPVSQVEARVEALVAERKRLEKELAEA 756 Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 KR L + + +I ++ ++ V K+L+ + + +K++ SGI+ LVG + Sbjct: 757 KRALAVGGGGAASGPEEINGTKLIARVLEGVGGKDLRPLAEDFRKQVGSGIVALVG-KLD 815 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 KA+V + VT DL R+NA +LA+ + +GG G GG+P AQ G P+ +KAD + V Sbjct: 816 GKAAVTVTVTADLTGRYNAAELAKAAVIAMGGQGAGGKPDFAQGGAPDDSKADAGLEAVK 875 Query: 894 SFL 896 + + Sbjct: 876 ALI 878 >gi|103487205|ref|YP_616766.1| alanyl-tRNA synthetase [Sphingopyxis alaskensis RB2256] gi|123253182|sp|Q1GSD9|SYA_SPHAL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|98977282|gb|ABF53433.1| alanyl-tRNA synthetase [Sphingopyxis alaskensis RB2256] Length = 884 Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/888 (50%), Positives = 604/888 (68%), Gaps = 37/888 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL++F GH + PS+ L+P NDPTLMF N+GMVPFKN+FTG EK Y Sbjct: 1 MTSTNDIRRSFLDYFGGAGHHIEPSAPLVPYNDPTLMFVNAGMVPFKNVFTGLEKRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW L+T+ + L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHHAWTLITQTWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L TVY D+EAF LWKKI+GL ++IIRI T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 121 APEKLTATVYHTDDEAFDLWKKIAGLPDERIIRIPTSDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + GG PGS EE G+R++EIWNLVFMQ+EQ ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 DHVRGGPPGSPEEDGDRFVEIWNLVFMQYEQLPGGERVDLPRPSIDTGMGLERVAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI+AS ++TG++ + + +HRVI DHLR+SSFL+ADG+LP+NEGRGY Sbjct: 241 VHDNYDTDTFKALIEASVELTGVRADEAHRASHRVIADHLRASSFLVADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM LLP+L EMG+AYPELI+A+ LI ETL E+ +F Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLLPSLTAEMGAAYPELIRAQPLIAETLEREEVKFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLD+GL LLD + +G+ + L GDVAFKLYDT+G P D+ +D L ++G++ +D F+ Sbjct: 361 QTLDKGLRLLDEATADMGRGDTLVGDVAFKLYDTYGFPYDLTEDALRSKGIS-VDRAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q++ ARA G G +E+IWF L E +G+T+F GY Sbjct: 420 AAMAQQKAAARAAWKGSGQKASEEIWFDLAETHGSTEFTGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538 T+G ++++ A+V+ G+ VEEA +G +V V+ +QTPFY E+GGQ+GD G A +G Sbjct: 461 ---TSTSGEATVI-ALVRDGQPVEEARAGDEVIVLTNQTPFYGESGGQMGDAGMIATLEG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++D K + H A +E G L+ ++ LT+D + R ++ NHSATHLLH AL Sbjct: 517 AKASVSDTGKPLGRLHTHQAKLEAGTLKVGDTVQLTVDAERRDRIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS + D RFD +H K +T+AE+ IE +VN I N PV TR+M +D Sbjct: 577 NRLGGHVTQKGSLVAADRFRFDFSHPKALTAAEIADIEADVNAQIRGNEPVTTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AIA+GA AL G KY D VRV+++ D +S LCGGTHV + G+I L IVSES++ + Sbjct: 637 AIAAGALALFGEKYGDEVRVLAMGKADDRNYSVELCGGTHVRALGDIALFKIVSESAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776 G+RRIEA+TG+ AR L G+DE LK+ A+ LK S V RV ++ E+ +K +L AK Sbjct: 697 GVRRIEALTGEAARQWLNGRDEALKAAAAALKTSPDEVPARVAQLAEQLKKAERELADAK 756 Query: 777 RKL--------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + L + ++ DV F++ ++ +D KEL+ +D L+K++ SG+ MLV Sbjct: 757 KALALGGSGGDGGAAAGPAVEQVGDVAFLAQVVDGLDPKELRGTVDGLKKQVGSGVAMLV 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++ + +ASV + VT+D +AVDL + + LGG GGGGRP MAQ Sbjct: 817 AVN-DGRASVAVGVTDDKTGHHSAVDLVKAAVVALGGQGGGGRPDMAQ 863 >gi|326403001|ref|YP_004283082.1| alanyl-tRNA synthetase [Acidiphilium multivorum AIU301] gi|325049862|dbj|BAJ80200.1| alanyl-tRNA synthetase [Acidiphilium multivorum AIU301] Length = 878 Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/901 (48%), Positives = 595/901 (66%), Gaps = 30/901 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR TFL+FF +NGHE++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y Sbjct: 1 MTSSNDIRATFLDFFARNGHEVVPSAPLVPRNDPTLMFVNAGMVPFKNVFTGHEHRPYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLT++F L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIENAWTLLTRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + +L +TVY ED+EA LWK+I+GL +KIIRI T+DNFW M +TGPCGPCSEIF+D Sbjct: 121 PKEKLLVTVYHEDDEAASLWKRIAGLPDEKIIRIATDDNFWRMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQF ++ R LP+ SIDTGMGLER A +LQ Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQFLEEPAGVRNPLPRPSIDTGMGLERFAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI AS +V+ +G + V+HRVI DHLR++SFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDTDTLRALILASAEVSHTDPDGAHKVSHRVIADHLRATSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG EP + L+PAL +MG A+PEL +A+ LI ETL+ E+++F Sbjct: 301 VLRRIMRRAMRHAHRLGMREPFIYRLVPALTRQMGVAFPELPRAEALIVETLKLEEQKFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+RGL LL+ + LG E L G VAFKLYDT+G PLD+ +D L + G+D F Sbjct: 361 VMLERGLSLLEDEVQKLGSGEKLPGAVAFKLYDTYGFPLDLTEDALREQHR-GLDHEGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ EQ++RARA G G TE +W L+++ G T+F+GY Sbjct: 420 ASMAEQKARARAAWAGSGDAATETVWLDLRDRLGGTEFLGYS------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + + A+V G A +GQ+V ++ +QTPFYAE+GGQ+GDTG G+ Sbjct: 462 -----TEESDASILAVVVNGAPAGRAEAGQEVALILNQTPFYAESGGQVGDTGTLTAPGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++TD QKKA +FVH+ +E G + S+ +D+ R + +HSATHLLH AL Sbjct: 517 TIRVTDTQKKAGDLFVHYGTIEEGEIAPGNSVHAEVDHARRGAIRAHHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD++ +P+T AEL+++E VN I +N V TR+M ++A Sbjct: 577 ALGPHVTQKGSLNAPDRLRFDISQPRPVTGAELRAVEREVNARIRENAAVETRLMTPDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + GA AL G KY D VRVVS+ D G +S LCGGTHV+ TG+I I++ES + Sbjct: 637 VKRGAMALFGEKYGDEVRVVSMGAGDAGKSAYSIELCGGTHVARTGDIGAFRILAESGVA 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775 AGIRRIEA+TG+ A + + L+ A+ LKV+ + R+ + EE ++ Q+ Sbjct: 697 AGIRRIEAVTGEAALAATEAAADLLEEAAAALKVAPAELPARIAALLEEKKRFERQVAEL 756 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 +RKL ++A + F + + EV ++LKS+ D++ K + SGI LV + E K Sbjct: 757 QRKLATGGAASEIEEVAGIKFAARNLGEVSPRDLKSLADSILKSMGSGIAALVSTA-EGK 815 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 AS+++ V+ DL DRFNAV L R +++ +GG GGGGRP MAQ+GGP+G KAD+A+A + + Sbjct: 816 ASIVVAVSPDLTDRFNAVTLVRAASEAVGGKGGGGRPDMAQAGGPDGGKADEALAAIRAS 875 Query: 896 L 896 L Sbjct: 876 L 876 >gi|332185154|ref|ZP_08386903.1| alanyl-tRNA synthetase [Sphingomonas sp. S17] gi|332014878|gb|EGI56934.1| alanyl-tRNA synthetase [Sphingomonas sp. S17] Length = 882 Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/905 (49%), Positives = 597/905 (65%), Gaps = 34/905 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR FL++F GH+++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y Sbjct: 1 MTSTNDIRRGFLDYFGSQGHQIVPSAPLVPQNDPTLMFVNAGMVPFKNVFTGLETRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTK + + Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKVWGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L TVY D+EAF LWKKI+GL KIIRI T DNFW+M E GPCGPCSEIF+D G Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPDHKIIRIPTKDNFWAMGENGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQFEQ+ + LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIYGGPPGSPEEDGDRFVEIWNLVFMQFEQEANEIVGELPKKSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI AS ++T K E +HRVI DHLRS+ FL+ADG+LPANEGRGY Sbjct: 241 VHDNYDTDTFKALIAASCELTHTKAEDGQKASHRVIADHLRSAGFLVADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L+PAL EMG+AYPEL++A+ LIE TL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKEPLMHRLVPALVAEMGAAYPELVRAQPLIEATLKQEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLD+GL LLD + + L G+ AFKLYDT+G P D+ +D L A+ L+ +D F+ Sbjct: 361 QTLDKGLKLLDEATAGMAPGATLAGETAFKLYDTYGFPYDLTEDALRAQNLS-VDRAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+ ARA G G+ ++ +WF + E+ G+T+F+GY Sbjct: 420 AAMAEQKRAARAAWKGSGAKASDDVWFDIAEETGSTEFLGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD-G 538 ++ V A+V+ G V+ A +G V ++ +QTPFY E+GGQ+GD+G D G Sbjct: 461 ----ASDTGEGEVLALVKDGARVDSAGAGDTVSIIVNQTPFYGESGGQVGDSGTISSDTG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ +TD K+ +FVH+A ++ G ++ S+ L ID R + NHSATHLLH AL Sbjct: 517 LKAVVTDTSKQLGRVFVHNAEIQEGGIKVGDSVKLAIDTTRRAAIRANHSATHLLHEALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + P+ LRFD + +T+ ++ +E VN+ + N PVVTR+M ++ Sbjct: 577 QRLGTHVAQKGSLVAPERLRFDFSQPVGMTADDIAEVEAKVNEQVRGNGPVVTRLMTPDE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI GA AL G KY D VRVVS+ + G +S LCGGTHV++ GEI + IVSE ++ + Sbjct: 637 AIEMGAMALFGEKYGDEVRVVSMGEDADGTYSLELCGGTHVNALGEIGVFKIVSEGAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RR+EA+TG+ AR++L +D+ LK+ A+ LK + V GR+ + EE R+L+ A+ K Sbjct: 697 GVRRVEALTGEGARAYLSHRDDMLKAAAATLKTTPDEVPGRIAALVEERRRLERELAEAK 756 Query: 779 ------LQLNVEDLSCHKIADVNFMSHIISEVDSKELK-SVMDALQKKIQSGIIMLVGIS 831 +I DV F+ ++ ++K L+ +V DA Q+ SG+ ++V ++ Sbjct: 757 KALAMGGGAGGAAAGPEQIGDVAFIGQVLDGFEAKGLRGAVDDAKQRLGGSGVAVMVAVN 816 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + +ASV + VT+DL + NAVDL R + LGG GGGGRP MAQ GGP+G K +A+ Sbjct: 817 -DGRASVAVGVTDDLTAKHNAVDLLRKAVAALGGQGGGGRPDMAQGGGPDGTKGAEALQA 875 Query: 892 VASFL 896 V L Sbjct: 876 VRDAL 880 >gi|84500806|ref|ZP_00999041.1| alanyl-tRNA synthetase [Oceanicola batsensis HTCC2597] gi|84390873|gb|EAQ03291.1| alanyl-tRNA synthetase [Oceanicola batsensis HTCC2597] Length = 892 Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/903 (49%), Positives = 578/903 (64%), Gaps = 51/903 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F++ GHE++PSS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MQSLNDIRSTFLNYFKRQGHEIVPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+TKE + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELVTKELGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY D+EA +WKK++GL D+IIRI T DNFW M TGPCGPC+EIFFD G Sbjct: 121 PKDRLLVTVYHTDDEAADIWKKVAGLPDDRIIRIPTADNFWQMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS EE G+R+IEIWNLVFMQ+EQ R L SIDTGMG+ER+A +LQ Sbjct: 181 DKFWGGPPGSPEEDGDRFIEIWNLVFMQYEQFEDGTRRELDAQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS T + +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 TNDNYATDLMRALIEASAHQTSSEPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +MG AYPEL QA+ LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPLMHRLVPELVRQMGEAYPELRQAQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD LS L +D L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 361 QTLDRGLKLLDDELSGLPEDAALPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTEGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G +WF L +++GAT F+GYD Sbjct: 420 SAMAEQKAKARAAWAGSGESADLSVWFDLADQHGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+++ GE VEE SG++ +V +QTPFY EAGGQ+GDTG Sbjct: 462 -----TETAEGQILALIRDGEQVEELKSGEQGWIVTNQTPFYGEAGGQVGDTGWI----R 512 Query: 540 RLQ-------ITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 RL+ +TD QK G I+ H+ +++G R ++ L +D+ R + NHSATH Sbjct: 513 RLENEDEIATVTDTQKMGAGRIYAHNVTIDQGSFRASDAVALEVDHGRRATIRANHSATH 572 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS PD LRFD +HS ++ EL IE +VN I QN PV T Sbjct: 573 LLHEALREALGDHVAQRGSLNAPDRLRFDFSHSAALSPEELARIERDVNAFIRQNTPVET 632 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYE------DGGVHSSALCGGTHVSSTGEI 705 RIM +DA GA AL G KY D VRVVS+ + G +S LCGGTHV+ TG+I Sbjct: 633 RIMTPDDARGLGAQALFGEKYGDEVRVVSMGQKATGKGAGGNTYSIELCGGTHVARTGDI 692 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + SE++ AG+RRIEA+TG+ A + L G+D L + LK + VV RV+ + + Sbjct: 693 GAFALTSETASSAGVRRIEALTGEAALAELRGRDTALAQIEGMLKATGPEVVSRVKAMMD 752 Query: 766 EYRKLQ--LIHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E R LQ + +R L ++ +I V F++ +S V K+L +++D + Sbjct: 753 ERRALQNEVAQLRRDLAMSGGAGQGGGAETREINGVKFLAQSLSGVSGKDLPALIDQFKD 812 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +I SG ++L+ + KA+V VT DL DR +AVDL R + LGG GGGGRP MAQ G Sbjct: 813 QIGSGAVLLIADTG-GKAAVAAGVTPDLTDRLSAVDLVRAAVPELGGKGGGGRPDMAQGG 871 Query: 879 GPN 881 G + Sbjct: 872 GAD 874 >gi|209964228|ref|YP_002297143.1| alanyl-tRNA synthetase [Rhodospirillum centenum SW] gi|209957694|gb|ACI98330.1| alanyl-tRNA synthetase AlaS [Rhodospirillum centenum SW] Length = 898 Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/897 (49%), Positives = 588/897 (65%), Gaps = 44/897 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TFL+FF+KNGH ++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 5 TANEIRATFLDFFKKNGHAVVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGNETRPYSRAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKE+ L + Sbjct: 65 TAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKADAIELAWTLITKEYGLPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +TV+ D+EA LWKK++G+ D+IIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 125 DRLCVTVFHTDDEAADLWKKVAGIGDDRIIRIPTSDNFWMMGDTGPCGPCSEIFFDHGPH 184 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERMATVLQ 238 I GG PGS+E+ G+R+IEIWNLVFMQ+EQ K ER LPK SIDTGMGLER+A VLQ Sbjct: 185 IAGGPPGSAEQDGDRFIEIWNLVFMQYEQFPKDGGHERVPLPKPSIDTGMGLERLAAVLQ 244 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NYD DL + LI AS TG EG + V+HRVI DHLR+ SFLIADG++P+NEGRG Sbjct: 245 GVHDNYDTDLMRALILASADATGAPPEGAHAVSHRVIADHLRACSFLIADGVMPSNEGRG 304 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRIMRRAM +A +LG +P+M L+PAL EMG Y EL +A+ LI ETLR E+ +F Sbjct: 305 YVLRRIMRRAMRHAHMLGAKDPVMYRLVPALVREMGGHYTELQRAQPLITETLRLEETKF 364 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TLDRGL LLD L + L+G VAF LYDT+G PLD+ QD+L R G+D+ F Sbjct: 365 KQTLDRGLRLLDEEEGRLAPGQALSGQVAFTLYDTYGFPLDLTQDVLRGR-QRGVDVDGF 423 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 N A+EEQR +ARA G G TE++WF LK++ GAT+F+GYD Sbjct: 424 NAAMEEQRRKARAAWAGSGEAATERVWFELKDEVGATEFLGYD----------------- 466 Query: 479 KPPIDLTNGVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-G 536 T + V A++ G ++ A +GQ+V VV +QTPFY E+GGQ+GD+G Sbjct: 467 ------TEMAEAKVTALLDPAGTRLDRAAAGQEVIVVVNQTPFYGESGGQVGDSGVLFSA 520 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 G + + D QKK ++ H V RG + + L +D R + NHSATHLLH A Sbjct: 521 GGAEVAVRDTQKKLGAVWAHIGAVTRGTIAVGDVVELRVDGARRADIRANHSATHLLHEA 580 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LG HV+Q GS + P+ LRFD++ P+++ +++ +E VN I N V TR+M+ Sbjct: 581 LRRRLGEHVTQKGSLVAPERLRFDISQPTPLSAEDVQVVEAEVNRRILGNSEVTTRLMSP 640 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSE 713 + AI GA AL G KY + VRVVS+ D G + S LCGGTHV TG+I L IVSE Sbjct: 641 DAAIELGAMALFGEKYGEEVRVVSMGGVDAGGNKEFSVELCGGTHVRRTGDIGLFKIVSE 700 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 ++ AG+RRIEA+TG+ A S+L Q+ +L AS LKV V +V + EE R+L+ Sbjct: 701 GAVAAGVRRIEAMTGRGALSYLDEQEGRLIQAASALKVPPAEVPAKVAALVEERRRLEKE 760 Query: 774 HAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 A + Q+ + ++ V ++ ++ ++ +K+LK + D L+K++ SG++ Sbjct: 761 LADLRRQVALGGGGAGPAAAAAVKEVGGVKLLARVLPDLPAKDLKPLADDLKKQVGSGVV 820 Query: 826 MLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 V IS+ + K S+++ VTEDL R +AVDL R + +GG GGGGRP MAQ+GGP+ Sbjct: 821 --VAISQADGKGSIVVGVTEDLAGRLSAVDLVRAGSAAMGGKGGGGRPDMAQAGGPD 875 >gi|294012144|ref|YP_003545604.1| alanyl-tRNA synthetase [Sphingobium japonicum UT26S] gi|292675474|dbj|BAI96992.1| alanyl-tRNA synthetase [Sphingobium japonicum UT26S] Length = 884 Score = 837 bits (2162), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/904 (48%), Positives = 599/904 (66%), Gaps = 33/904 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL++F NGH ++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y Sbjct: 1 MTSTNDIRRSFLDYFGANGHTIVPSAPLVPHNDPTLMFVNAGMVPFKNVFTGLESRPYST 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTKE+ L Sbjct: 61 ATSSQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAITHAWTLLTKEWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L TVY D+EAF LWKKI+GL ++IIRI T DNFW+M ++GPCGPCSEIF+D G Sbjct: 121 PAEKLTATVYHTDDEAFDLWKKIAGLPEERIIRIPTKDNFWAMGDSGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQ+EQ+ + LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQEANEIVSELPKPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D F+ LI+ S +T EG +HRVI DHLRS+SFLIADG+LPANEGRGY Sbjct: 241 VHDNYDTDTFRALIEESGALTKTATEGEFKASHRVIADHLRSTSFLIADGVLPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G EPLM L+ +L +EMG AY EL++A+ LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHIIGAKEPLMHRLVGSLVSEMGGAYQELVRAQPLIEETLLREETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LLD L + L G+ AFKLYDT+G P D+ +D L +RGL G+D F+ Sbjct: 361 QTLEKGLKLLDEATGDLSEGGTLPGETAFKLYDTYGFPYDLTEDALRSRGL-GVDREGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ++ ARA G G +++IWF + EK G T+FIGY Sbjct: 420 KAMAEQKAAARAAWKGSGEKASDEIWFDIAEKTGNTEFIGY------------------- 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDG 538 T G +V AIV+ G + A +G+ V +V +QTPFY E+GGQ+GD G + G Sbjct: 461 ---SSTEGEGEVV-AIVKDGVNFDSAAAGETVLIVTNQTPFYGESGGQMGDAGTISSQSG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + D K + H A + G ++ ++ L++D R ++ NHSATHLLH AL Sbjct: 517 LVADVEDTAKPLGRLHAHRAKIGAGSVKVGDTVHLSVDVNRRDRIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS + PD LRFD +H + +T ++ +IE +VN+ + N V TR+M +D Sbjct: 577 NRLGAHVTQKGSLVAPDRLRFDFSHPEALTHGQIAAIEADVNEQVRHNEAVTTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI +GA AL G KY D VRV+S+ D +S LCGGTHV +TG+I + I+SES++ + Sbjct: 637 AIQAGAMALFGEKYGDEVRVLSMGKGDAHSYSVELCGGTHVRATGDIAIFKIISESAVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776 G+RRIEA+TG+ AR L ++++L+ A+ LK + V R+ + E+ RKL +L AK Sbjct: 697 GVRRIEALTGEAARLWLSDREDRLRQSAAALKTTPEEVPARIAALVEQSRKLERELAEAK 756 Query: 777 RKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + L L + KI VNF+ +I +D KEL+ ++D + + SG+ ++ + Sbjct: 757 KALALGGGGSAQAAGPEKIGAVNFIGQVIEGLDPKELRGLVDQNKATLGSGVSAILAVV- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + +A++ + VT+DL+ +AVDL R + LGG GGGGRP MAQ GGP+G+KA+ A+ V Sbjct: 816 DGRATIAVGVTDDLVGSISAVDLVRAGVEALGGKGGGGRPDMAQGGGPDGDKAEAALEAV 875 Query: 893 ASFL 896 + L Sbjct: 876 KAAL 879 >gi|302382286|ref|YP_003818109.1| alanyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264] gi|302192914|gb|ADL00486.1| alanyl-tRNA synthetase [Brevundimonas subvibrioides ATCC 15264] Length = 881 Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/894 (47%), Positives = 568/894 (63%), Gaps = 33/894 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS++ IR+TFL+FF +GH + S+ L+P NDPTLMF N+GMVPFK+ FTG P Y Sbjct: 1 MSSLKQIRSTFLDFFAADGHTKVHSAPLVPQNDPTLMFVNAGMVPFKDYFTGAATPPYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFKE AI+ AW L+T+ + L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKEHAIEQAWKLVTEGYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY +D+EA +WKK++G DKIIRI +DNFW+M + GPCGPC+EIF+D G Sbjct: 121 DAKRLLVTVYIDDDEAAAIWKKVTGFGDDKIIRIAGSDNFWAMGDNGPCGPCTEIFWDYG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + + GG PGS E+G+RY+EIWN VFMQFE++N + LPK S+DTGMGLERM +VLQ Sbjct: 181 DHVAGGPPGSPDEDGDRYVEIWNNVFMQFEKENDEIVRSLPKPSVDTGMGLERMTSVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K + +D DLF+ LI ASE T K EG+ +HRVI DHLRSSSFLIADG+ P+NEGRGY Sbjct: 241 KNSVFDTDLFQTLIAASEDATSTKAEGDRAASHRVIADHLRSSSFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +EMG AYPEL +A+ IEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVSEMGEAYPELARAQASIEETLKQEEIRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ LL+ LG+ ++ G AF LYDT+G PLD+ QD RG +D +F+ Sbjct: 361 TTLGRGMGLLEDATRDLGEGGVIPGQTAFTLYDTYGFPLDLTQDEARRRGFT-VDTDAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q++R +A+ G G + W +LK++ G T F GYD + G Sbjct: 420 AAMEQQKTRGKANWKGSGQTASTGEWLALKDRLGPTVFTGYDAVDG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V AI++ G + +G+ EV+FDQTPFY E GGQ GD G G Sbjct: 466 ---------SGEVLAILKDGTAADSVETGETAEVLFDQTPFYGEGGGQAGDKGEIEWAGG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ DV K ++ H V G L L R NHSA HL+H AL Sbjct: 517 SARVLDVLKPTGDLYAHTIEVTSGTLAIGTRAQLRAAPDARLTTRANHSAAHLVHAALKN 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q G + + +RFD +H+ P+T EL IE VN +I QNLP T++M ++A Sbjct: 577 VLGPHVAQKGQLVDAERMRFDFSHNAPLTEDELARIETEVNAVIRQNLPAETKLMGPQEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 I +GA AL G KY D VRV+++ +S LCGGTHV+ TG+I L I SE+ I Sbjct: 637 IEAGAVALFGEKYGDEVRVLTLGKSLTSDKPYSVELCGGTHVARTGDIGLFKITSETGIA 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AGIRR+EA+TG+ AR L+ Q +SLA KV +V RVE + E + L+ A+ Sbjct: 697 AGIRRVEALTGEAARQFLLAQAGVARSLAQTFKVQPLDVPARVEALSTERKALEKQVAEL 756 Query: 778 KLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + + + +I V ++ ++ VD K L+ V + +K++ SG++ L+G++ Sbjct: 757 KKQLALGGGGSANAAPEEINGVKLIARVLDGVDGKGLRGVAEDFRKQVGSGVVALIGVT- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + KA+V + T D+ DR NA DLAR + +GG G GG+ AQ G P+G+KA+ Sbjct: 816 DGKAAVTVAATSDVTDRVNAADLARAAVIAMGGQGAGGKADFAQGGAPDGSKAE 869 >gi|163746280|ref|ZP_02153638.1| alanyl-tRNA synthetase [Oceanibulbus indolifex HEL-45] gi|161380165|gb|EDQ04576.1| alanyl-tRNA synthetase [Oceanibulbus indolifex HEL-45] Length = 885 Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/892 (49%), Positives = 571/892 (64%), Gaps = 39/892 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F GH+++PSS L+P NDPTLMFT +GMV FKN+FTG E Y Sbjct: 1 MKTLNEIRSTFLNYFDAQGHQVVPSSPLVPRNDPTLMFTAAGMVQFKNLFTGVETRNYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AWDLLTKEF + Sbjct: 61 ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWDLLTKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RL +TVY DEEA K+WK +GL ++IIRI T+DNFWS TGPCGPC+EIF+D G Sbjct: 121 DPNRLLVTVYHTDEEAVKIWKAHTGLPDERIIRIATDDNFWSAGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQ+EQ R LP SIDTGMG+ER+A +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTREPLPNQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS + +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 TNDNYATDLMRSLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P+L +MG+AYPEL QA+ LI ETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGVKDPLMHQLVPSLVQQMGAAYPELGQAQSLIRETLLLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L + L G+ AFKLYDT G PLD+ QD L +G A +D FN Sbjct: 361 QTLDRGLKLLDDELHGLPEGATLPGEAAFKLYDTFGFPLDLTQDALREKGRA-VDTDGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E Q+++ARA G G +WF + +K G T+F+GYD Sbjct: 420 TAMEAQKAKARAAWAGSGEAADATVWFDVADKSGVTEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+VQ + VE A +G V+V +QTPFYAE+GGQ+GDTG Sbjct: 462 -----TESAEGQIVALVQGSDKVEAASAGSDVQVALNQTPFYAESGGQVGDTGVIRTQTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +TD +K A G+FVH V G ++ S VL +D R + NHSATHLLH AL Sbjct: 517 IVNVTDTRKSA-GVFVHFGHVIEGEVKPGQSAVLEVDRARRSAIRANHSATHLLHEALRN 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HVSQ GS D LRFD +H+K +T EL +E VND + QN PV TRIM +DA Sbjct: 576 ALGDHVSQRGSLNAHDRLRFDFSHAKGLTPEELTQVEREVNDYVRQNTPVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-------GVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ +G +S LCGGTHV TG+I ++ Sbjct: 636 RAMGAQALFGEKYGDEVRVVSMGQLEGSGKGSNKSTYSLELCGGTHVRQTGDIGAFVLLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +S+ +G+RRIEA+TG A + L Q+ L +A+ LK S +V RV + +E R L Sbjct: 696 DSASSSGVRRIEALTGTEALAWLRDQEAALSRVAAELKTSTADVPDRVRALLDERRSLSN 755 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ +R+L ++ + + +VN F+ ++S V K+L ++D + KI SG ++L Sbjct: 756 EVAQLRRELAMSGGSAAAPEAREVNGVKFVGQVLSGVTGKDLPGLVDEHKAKIGSGAVLL 815 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + + KA+V VT+DL DR +AVD+ + + LGG GGGGRP MAQ GG Sbjct: 816 IADTG-GKAAVAGGVTKDLTDRLSAVDMVKAAVAELGGKGGGGRPDMAQGGG 866 >gi|126726568|ref|ZP_01742409.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150] gi|126704431|gb|EBA03523.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2150] Length = 886 Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/911 (47%), Positives = 588/911 (64%), Gaps = 40/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR++FL +F K GH+++ SS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MQTLNDIRSSFLSYFDKQGHQVVDSSPLVPRNDPTLMFVNSGMVQFKNMFTGAETRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFKE AI AW+++TK + Sbjct: 61 AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKEDAILFAWEMVTKVLGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+TVY D+EA +WKK++GLS D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKNRLYVTVYHTDDEAANIWKKVAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS EE G+R++EIWNLVFMQ Q +LPK SIDTGMG+ER+A +LQ Sbjct: 181 EHIWGGPPGSPEEDGDRFVEIWNLVFMQNVQHEDGSMTLLPKQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS T +G +HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 241 TNDNYSTDLMRSLIEASANETSSDPDGAGKTHHRVIADHLRSTSFLLADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL ++MG+AYPEL QA+ LI ETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVSQMGAAYPELQQAQSLITETLKQEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD ++ LG+ L+G AFKLYDT G PLD+ QD L +GL G+D F+ Sbjct: 361 QTLERGLRLLDDEVAGLGEGADLSGSAAFKLYDTFGFPLDLTQDALREKGL-GVDKDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA +G G +WF + +++G T F+GYD Sbjct: 420 AAMAEQKAKARAAWVGTGETADASLWFDIADEHGVTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+++ G V+ + G V++V +QTPFYAE+GGQ+GD G Sbjct: 462 -----TEVAEGQVLALIKDGVSVDATIVGDSVQIVMNQTPFYAESGGQIGDAGTLKTANG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++TD +K A G+F+HH V G + + + L +D+ R + NHSATHLLH AL Sbjct: 517 LVEVTDTRKNA-GLFIHHGKVVSGTVSKDEAAELVVDHARRGAIRANHSATHLLHEALRG 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HVSQ GS D LRFD +H+ I+ +L+ +E+ VN I QN V TRIM +DA Sbjct: 576 ALGDHVSQRGSLNAADRLRFDFSHNAAISQDDLRKVEEEVNAYIRQNTEVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I I+ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGQQSGSGKGANGETYSLELCGGTHVGQTGDIGTFVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +S+ AG+RRIEA+TG A ++L QD+++ ++A LK V RV+ + +E + L Sbjct: 696 DSASSAGVRRIEALTGAEAFAYLRDQDQRISTVAGMLKAQPEEVGARVKALMDERKSLQN 755 Query: 771 QLIHAKRKLQLNVEDLSCH----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 QL A+R L ++ S ++ V F + +++ V K+L +++D ++ + SG ++ Sbjct: 756 QLAEARRSLAMSGGGQSAPAAAIEVGGVKFHAQVLTGVTGKDLPALVDEHKESLGSGAVL 815 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L+ + KA+V VT DL++R +AVDL + + LGG GGGGRP MAQ GG + ++ Sbjct: 816 LIADTG-GKAAVAAGVTADLVERISAVDLVKAAVVELGGKGGGGRPDMAQGGGASAENSE 874 Query: 887 QAIAGVASFLK 897 AI + LK Sbjct: 875 NAIKAATAVLK 885 >gi|297717784|gb|ADI50035.1| alanyl-tRNA synthetase [Candidatus Odyssella thessalonicensis L13] Length = 865 Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/889 (49%), Positives = 597/889 (67%), Gaps = 34/889 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F++N HE++ SSSL+P NDPTL+FTN+GMV FK++FTG EK Y Sbjct: 1 MRTLADIRSTFLNYFKENRHEVVASSSLVPANDPTLLFTNAGMVQFKDVFTGLEKRSYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI LAW+L+TK F L Sbjct: 61 ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIYLAWNLVTKNFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TVY EDEEA LWKKI+G KIIRI T+DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 SPERLLVTVYHEDEEAANLWKKIAGFPDHKIIRIATSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS+ ++G+R+ E WNLVFMQFEQQ R LPK S+DTGMGLER AT+LQ Sbjct: 181 ESIAGGPPGSADQDGDRFTEFWNLVFMQFEQQADGTRINLPKPSVDTGMGLERFATILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD DLFK LI+AS ++TG + +H VI DHLR+SSFL+ADG++P+NEGRGY Sbjct: 241 VHNNYDTDLFKSLIEASTELTGTQAAAYR-HSHNVIADHLRASSFLLADGVMPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG EPLM L+ L MG+AYPEL +A+ +I+E L+ E+ERF Sbjct: 300 VLRRIMRRAMRHAHLLGAKEPLMYRLVDRLVEVMGTAYPELTRAQAMIKENLKLEEERFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ + L + L+G++AFKLYDT+G PLD+ QD+L ++ + +D+ FN Sbjct: 360 QTLERGLRLLEEETAKLAPTQALSGEIAFKLYDTYGFPLDLTQDVLRSQDRS-VDLEGFN 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q++ ARAH G G E++WF +++++GA++F+GY+ Sbjct: 419 AAMAAQKAAARAHWSGSGEKKDEQVWFDIQQEFGASEFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA-IGDG 538 + ++V+AIV + V +GQ ++VF+QTPFYAE+GGQ GD G +G Sbjct: 461 -----SETAEALVQAIVVNSQTVAHLSAGQTGDIVFNQTPFYAESGGQEGDQGVIHFANG 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++ + K + VHH +E G ++ + L ++ Q R+ L +HSATHLLH AL Sbjct: 516 AQARVLNTNKHLGSLHVHHVTLESGRIKVGETAKLVVNGQRRQGLRAHHSATHLLHAALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS + D LRFD TH+KP+T+ E+K+IE VN I N + T +M E+ Sbjct: 576 RHLGGHVTQKGSLVAADRLRFDFTHTKPLTAEEIKAIEQEVNLQILANTAIETHLMAAEE 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AIASGA AL G KY D VRV+ + DG +S LCGGTH S TG+I L+ I+SE+ + A Sbjct: 636 AIASGAMALFGEKYGDEVRVLKMGQCDGAAYSIELCGGTHASRTGDIGLVKILSEAGVSA 695 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776 G+RR+EAI G A +L E++ L+ LK + +++ + +E + QL + Sbjct: 696 GVRRLEAIAGIAALDYLRSLQEQISKLSFTLKCPSVEIPEKIDLLLQERKTFERQLADLR 755 Query: 777 RKLQLNVED----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 +K+ L +I +N ++ + ++ +K+LK ++D L+ +++SG+I+L + Sbjct: 756 QKMALGGSSGTTVAGLKQIGHINVLTKNLVDIPAKDLKPLVDQLKTEVKSGVIILTSVV- 814 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 E K +++I VT DL D+ NAVDL R ++VLGG GGGGRP MAQ+GG N Sbjct: 815 EDKVALVIGVTADLTDKVNAVDLVRAGSEVLGGKGGGGRPDMAQAGGSN 863 >gi|148260046|ref|YP_001234173.1| alanyl-tRNA synthetase [Acidiphilium cryptum JF-5] gi|205829966|sp|A5FXC2|SYA_ACICJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146401727|gb|ABQ30254.1| alanyl-tRNA synthetase [Acidiphilium cryptum JF-5] Length = 878 Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/902 (48%), Positives = 594/902 (65%), Gaps = 30/902 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR TFL+FF +NGHE++PS+ L+P NDPTLMF N+GMVPFKN+FTG E Y Sbjct: 1 MTSSNDIRATFLDFFARNGHEVVPSAPLVPRNDPTLMFVNAGMVPFKNVFTGHEHRPYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLT++F L Sbjct: 61 AASSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDVAIENAWTLLTRDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + +L +TVY ED+EA LWK+I+GL +KIIRI T+DNFW M +TGPCGPCSEIF+D Sbjct: 121 PKEKLLVTVYHEDDEAASLWKRIAGLPDEKIIRIATDDNFWRMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQF ++ R LP+ SIDTGMGLER A +LQ Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQFLEEPAGVRNPLPRPSIDTGMGLERFAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI AS +V+ +G + V+HRVI DHLR++SFLIADG+LP+NEGRGY Sbjct: 241 KHDNYDTDTLRALILASAEVSHTDPDGAHKVSHRVIADHLRATSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG EP + L+PAL +MG A+PEL +A+ LI ETL+ E+++F Sbjct: 301 VLRRIMRRAMRHAHRLGMREPFIYRLVPALTRQMGVAFPELPRAEALIVETLKLEEQKFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+RGL LL+ + LG E L G VAFKLYDT+G PLD+ +D L + G+D F Sbjct: 361 VMLERGLSLLEDEVQKLGSGEKLPGAVAFKLYDTYGFPLDLTEDALREQHR-GLDHEGFT 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ EQ++RARA G G TE +W L+++ G T+F+GY Sbjct: 420 ASMAEQKARARAAWAGSGDAATETVWLDLRDRLGGTEFLGYS------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + + A+V G A +GQ+V ++ +QTPFYAE+GGQ+GDTG G+ Sbjct: 462 -----TEESDASILAVVVNGAPAGRAEAGQEVALILNQTPFYAESGGQVGDTGTLTAPGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++TD QKKA +FVH+ +E G + S+ +D+ R + +HSATHLLH AL Sbjct: 517 TIRVTDTQKKAGDLFVHYGTIEEGEIAPGNSVHAEVDHARRGAIRAHHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD++ +P+T AEL+++E VN I +N V TR+M ++A Sbjct: 577 ALGPHVTQKGSLNAPDRLRFDISQPRPVTGAELRAVEREVNARIRENAAVETRLMTPDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + GA AL G KY D VRVVS+ D G +S LCGGTHV+ TG+I I++ES + Sbjct: 637 VKRGAMALFGEKYGDEVRVVSMGAGDAGRSAYSIELCGGTHVARTGDIGAFRILAESGVA 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775 AGIRRIEA+TG+ A + + + L+ A+ LKV+ + R+ + EE ++ Q+ Sbjct: 697 AGIRRIEAVTGEAALAATEAETDLLEEAAAALKVAPAELPARIAALLEEKKRFERQVAEL 756 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 +RKL ++A + F + + EV ++LKS+ D++ K + SGI LV + E K Sbjct: 757 QRKLATGGAAAEIEEVAGIKFAARNLGEVSPRDLKSLADSILKSMGSGIAALVSTA-ESK 815 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 AS+++ V+ DL NAV L + ++ V+GG GGGGRP MAQ+GGP+ +KAD+A+A V + Sbjct: 816 ASIVVAVSPDLTSANNAVTLVQAASGVVGGKGGGGRPDMAQAGGPDASKADEALAAVRAL 875 Query: 896 LK 897 +K Sbjct: 876 IK 877 >gi|294083659|ref|YP_003550416.1| alanyl-tRNA synthetase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663231|gb|ADE38332.1| alanyl-tRNA synthetase [Candidatus Puniceispirillum marinum IMCC1322] Length = 879 Score = 833 bits (2151), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/894 (49%), Positives = 592/894 (66%), Gaps = 39/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++V+ IR TFLE+F+ NGH+++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MASVNDIRATFLEYFKDNGHQVVDSSPLVPQNDPTLMFTNAGMVQFKNLFTGLETRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+LAW+L+T+E+ L Sbjct: 61 AATSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIELAWNLITREYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +L +TVY ED+EA LWKKI+GL+ D+IIRI T+DNFW+M +TGPCGPCSEIF+D G Sbjct: 121 DASKLLVTVYHEDDEAADLWKKIAGLNDDRIIRIATSDNFWAMGDTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS E+G+R+IEIWNLVFMQFE Q ER LPK SIDTGMGLER+A VLQ Sbjct: 181 DHIPGGPPGSPDEDGDRFIEIWNLVFMQFE-QTANERINLPKPSIDTGMGLERIAAVLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDIDL + LIQAS + + +G++ V+HRV+ DHLR+SSFLIADG+LP+NEGRGY Sbjct: 240 KHDNYDIDLMRALIQASAEAANVAADGDHNVSHRVVADHLRASSFLIADGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + +G +P M L+PAL EMG YPEL +A+ LI ETL+ E+ RF Sbjct: 300 VLRRIMRRAMRHLHQMGCQDPTMWRLVPALVAEMGGHYPELGRAQALITETLKLEEGRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA-GIDIISF 418 +TL RGL +L+ ++ +L+G AFKLYDT+G PLD+ QD + RG +D+ F Sbjct: 360 ETLGRGLRILNDEVAGKAAGGVLDGKTAFKLYDTYGFPLDLTQDFM--RGYEWDVDLDGF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 N A+E Q++ AR G G TE IW L ++ GAT+F+GY Sbjct: 418 NSAMEAQKAAARKAWSGSGDAATETIWLDLGQQLGATEFLGYS----------------- 460 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGD 537 T+ V A+V+ G + A +G+ V+++ +QTPFYAE+GGQ+GDTG + D Sbjct: 461 ------TDTAEGQVTALVRDGAAIASAAAGEDVQIITNQTPFYAESGGQVGDTGVISWAD 514 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G + D K G+FVH A + +G L + L ID R +L NHSATHLLH AL Sbjct: 515 GA-ADVADTFKTPMGMFVHRATITKGSLDVGNDVRLDIDVARRLRLRANHSATHLLHEAL 573 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV+Q GS + PD LRFD +H K +T EL ++ VN + N V TRIM E Sbjct: 574 REVLGEHVAQKGSMVGPDRLRFDFSHPKAMTEDELARVQAIVNSRVQMNSDVSTRIMTPE 633 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDG----GVHSSALCGGTHVSSTGEIMLLYIVSE 713 AI GA AL G KY D VRVV + E S LCGGTHV+ TG+I +L ++ E Sbjct: 634 AAIELGALALFGEKYGDEVRVVQMGGETDIKGRSAWSVELCGGTHVNRTGDISILKVIGE 693 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 S++ G+RRIEA+T A + ++ L A LK++ + RV ++ E+ ++ + Sbjct: 694 SAVAGGVRRIEAVTQAGAVEWIEHRERILSHTAELLKIAPEQLADRVAKLLEDNKRAERD 753 Query: 772 LIHAKRKL--QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + +RKL + +I VNF+ ++ + ++ELKS+ D +++ +++ +I LV Sbjct: 754 ITMMRRKLAAGGDAGGAGSEQINGVNFVGRLMEDTPARELKSMADEMKQGLENAVICLVA 813 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 + KAS+++ VT+DL+D NAVDL R+ + LGGGGGGGRP MAQ+GGPN + Sbjct: 814 -TDSGKASIVVAVTDDLVDAKNAVDLVRVGSAALGGGGGGGRPDMAQAGGPNAD 866 >gi|149202694|ref|ZP_01879666.1| alanyl-tRNA synthetase [Roseovarius sp. TM1035] gi|149143976|gb|EDM32010.1| alanyl-tRNA synthetase [Roseovarius sp. TM1035] Length = 893 Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/894 (49%), Positives = 583/894 (65%), Gaps = 41/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL FF++N H ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 3 MPTLNEIRSTFLSFFERNDHRVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVEHRDYVR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AWDLLTK+F + Sbjct: 63 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EA +WKK +GLS D+IIRI T+DNFWSM TGPCGPC+EIF+D G Sbjct: 123 DKSKLLVTVYHTDDEAANIWKKYAGLSDDRIIRIKTDDNFWSMGSTGPCGPCTEIFYDHG 182 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+EE G+R+IEIWNLVFMQ E+ L SIDTGMGLER+ +LQ Sbjct: 183 DSIWGGPPGSAEEDGDRFIEIWNLVFMQNERFEDGSMRALDMQSIDTGMGLERIGALLQG 242 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G V+HRVI DHLRS+SFL+ADG++P+NEGRGY Sbjct: 243 KHDNYDTDLMRSLIEASAHATSQDPDGPGRVHHRVIADHLRSTSFLMADGVMPSNEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL +MG A+PEL +A+ +IEETL+ E+ RF Sbjct: 303 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVAQMGQAFPELGRAQAMIEETLKLEETRFK 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD LS L + L G AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 363 QTLERGLRLLDDELSDLAEGAALPGVTAFKLYDTYGFPLDLTQDALREKGR-DVDTAGFD 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G + +WF + E+ G T F+GYD R Sbjct: 422 AAMAEQKAKARAAWAGTGEAADQAVWFDIAEEKGTTDFLGYDTER--------------- 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + A+V+ G V A G+ V++V +QTPFYAE+GGQ+GD+G + Sbjct: 467 --------AEGQIVALVRDGVRVSAATMGESVQIVLNQTPFYAESGGQVGDSGLLKTETG 518 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++++TD KK G+FVH A+VE G ++ + L + + R + NHSATHLLH AL Sbjct: 519 QVRVTDT-KKVAGVFVHIAVVETGEIKAGQAAQLEVSHARRSAIRANHSATHLLHEALRG 577 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++AEL+ +E VND I QN PV TRIM +DA Sbjct: 578 ALGEHVAQRGSLNAEDRLRFDFSHAKALSAAELERVEREVNDYIRQNAPVETRIMAPDDA 637 Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + DG +S LCGGTHV TG+I + ++ Sbjct: 638 RALGAQALFGEKYGDEVRVVSMGQAEGSGKGADGRTYSIELCGGTHVRRTGDIGVFVALA 697 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES+ AG+RRIEA+TG A +L GQ +L +AS LK +V RV+ + EE R L Sbjct: 698 ESASSAGVRRIEALTGAAAFDYLSGQAARLGQVASDLKARPEDVAERVKVLMEERRALAN 757 Query: 771 QLIHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 ++ +R+L ++ ++ V ++ +++ V K+L ++D + ++ SG + Sbjct: 758 EVAQLRRELAMSGGAGQGGGAEAREVGGVKLIAQVLTGVQGKDLPPLIDEHKARLGSGAV 817 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +L+ + K +V VTEDL DR +AV++ R + LGG GGGGR MAQ GG Sbjct: 818 LLIADTG-GKVAVAAGVTEDLTDRISAVEMVRAAVAELGGKGGGGRADMAQGGG 870 >gi|89071223|ref|ZP_01158404.1| alanyl-tRNA synthetase [Oceanicola granulosus HTCC2516] gi|89043236|gb|EAR49465.1| alanyl-tRNA synthetase [Oceanicola granulosus HTCC2516] Length = 885 Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/893 (48%), Positives = 592/893 (66%), Gaps = 38/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL++F++ GHE++ SS L+P NDPTLMFTNSGMV FKN+FTG E YQ Sbjct: 1 MTSLADIRSTFLDYFRRQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RH TFFEMLGNFSFG YFK AI AW+++TKE D+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHLTFFEMLGNFSFGDYFKADAIPFAWEMVTKELDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TVY +D+EA +LW+K++GL ++IIRI T+DNFW M TGPCGP SEIFFD G Sbjct: 121 PAERLLVTVYHDDDEAAELWRKVAGLPDERIIRIATDDNFWMMGPTGPCGPSSEIFFDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E GG PGS EE G+R+IEIWNLVFMQFEQ R L SIDTGMGLER++++LQ Sbjct: 181 EKFWGGPPGSPEEDGDRFIEIWNLVFMQFEQFEDGTRRELAAQSIDTGMGLERISSLLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N ++ DLF+ +I AS + + ++ +HRVI DHLRS+SFLIA+G+LP+NEGRGY Sbjct: 241 TNNVFETDLFRAIIDASAHASNTSTDEAHLTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG ++PLM L+PAL +MG+AYPEL + + +IE+TL +E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGASDPLMHRLVPALVQQMGAAYPELREQQAMIEDTLETEEVRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLDRGL LLD ++ L + L G+ AFKLYDT+G PLD+ +D L RG++ +D+ FN Sbjct: 361 NTLDRGLKLLDDEVARLETGKNLPGETAFKLYDTYGFPLDLTEDALRERGIS-VDLPGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++EEQ+ +ARA G G + +WF + +++G T F+GYD Sbjct: 420 ASMEEQKRKARAAWSGSGEAADQTVWFDIADEHGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G VE A +G +V++V +QTPFYAEAGGQ+GD G + Sbjct: 462 -----TETAEGQVLALVRDGAPVERAGAGAQVQIVLNQTPFYAEAGGQVGDAGTLTTETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD +K A G++VH A V G + L +D+ R + NHSATHLL+ AL Sbjct: 517 TAEITDCRKIA-GVYVHFARVTAGEIAAGEGARLEVDHARRGAIRANHSATHLLNEALRN 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS PD LRFD +H+K + + ++ ++E VN++I QN PV TRIM ++A Sbjct: 576 VLGDHVAQRGSLNAPDRLRFDFSHNKAMGADDIAAVEREVNELIRQNAPVTTRIMTPDEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE------DGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ DG +S LCGGTHV+ TG+I L + +E Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGIADTGKGLDGKTYSIELCGGTHVARTGDIGLFALTTE 695 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 ++ AG+RRIEA+TG+ A + L +D L + + LK V GRV + +E + L + Sbjct: 696 AASAAGVRRIEALTGEAAMAELRRRDRSLGEVEALLKCGPDEVAGRVRALMDERKALANE 755 Query: 772 LIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + +R+L ++ E + +I + F++ ++S V K+L S++D ++ + +G ++L+ Sbjct: 756 VSQLRRQLAMSGGPAEGPAAREINGMRFVAQVLSGVTGKDLPSLIDGMKSDLGTGAVLLI 815 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + KA+V VT DL++R +AVDL R + LGG GGGGRP +AQ GG + Sbjct: 816 A-DTDGKAAVAAGVTADLVERVSAVDLVRAAVAELGGKGGGGRPDLAQGGGKD 867 >gi|159044191|ref|YP_001532985.1| alanyl-tRNA synthetase [Dinoroseobacter shibae DFL 12] gi|205830080|sp|A8LL20|SYA_DINSH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157911951|gb|ABV93384.1| alanyl-tRNA synthase [Dinoroseobacter shibae DFL 12] Length = 887 Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/894 (50%), Positives = 577/894 (64%), Gaps = 41/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL FF +GHE++ SS L+P NDPTLMFTN+GMV FKN+FTG E Y Sbjct: 1 MPSLNEIRSTFLNFFGGHGHEIVDSSPLVPRNDPTLMFTNAGMVQFKNVFTGLEHRDYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AWDL+TKEF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWDLITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY D+EA ++WKK +GLS D+IIRI TNDNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLLVTVYHTDDEAAEIWKKHAGLSDDRIIRIPTNDNFWMMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQFEQ R LPK SIDTGMGLER+ +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQFEDGTREPLPKPSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS T + G+ V+HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 SHDNYDTDLFKTLIEASAHATSVDPYGDKNVHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG A+PEL +A+ LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMYRLVPALVGQMGQAFPELGRAQALIEETLMLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD ++ + + L G+ AFKLYDT+G PLD+ QD L +G A ++ F+ Sbjct: 361 QTLDRGLKLLDEAVADVPEGGALPGETAFKLYDTYGFPLDLTQDALREKGRA-VETEGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q+++ARA G G E IWF L E +GAT+F+GYD Sbjct: 420 AAMADQKAKARAAWAGSGETADESIWFDLAETHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G V + G+ +V +QTPFYAE+GGQ+GD+G + Sbjct: 462 -----TEVAEGQVLALVKDGAQVAQLAEGETGWMVLNQTPFYAESGGQVGDSGGYLKSNG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 I D QK+ G+F H + L+ L + +D R + NHSATHLLH AL Sbjct: 517 SGAIHDTQKR-NGLFAHKVTPKAQPLKAGDVLEMRVDPARRTAIRANHSATHLLHEALRQ 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS D LRFD +HSK +T EL+ +E VN I QN PV TRIM + A Sbjct: 576 ALGAHVAQRGSLNAADRLRFDFSHSKALTLEELQKVEAEVNAYIRQNSPVETRIMTPDAA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I + V Sbjct: 636 RDLGAQALFGEKYGDEVRVVSMGRQSGSGKGVSGETYSLELCGGTHVKQTGDIGVFVTVG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 E++ +G+RRIEA+TG+ A ++L QD +L +A+ LK +V RV + +E + LQ Sbjct: 696 ETASSSGVRRIEALTGEDAFAYLSAQDYRLAEVAASLKAQAADVPERVRSLLDERKALQN 755 Query: 772 -LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +R+L + +A V F++ +S V ++L S++D + ++ SG I Sbjct: 756 EVAQLRRELAMAGGGQGTAAPEAEAVAGVPFLAQSLSGVSGRDLPSLIDEHKARLGSGAI 815 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +L+ + KA+V VT DL DR +AVDL + + LGG GGGGRP MAQ GG Sbjct: 816 LLIADTG-GKAAVAAGVTADLTDRLSAVDLVKAAVAELGGKGGGGRPDMAQGGG 868 >gi|254487494|ref|ZP_05100699.1| alanyl-tRNA synthetase [Roseobacter sp. GAI101] gi|214044363|gb|EEB85001.1| alanyl-tRNA synthetase [Roseobacter sp. GAI101] Length = 885 Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/891 (48%), Positives = 577/891 (64%), Gaps = 39/891 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F+++GH + PSS L+P NDPTLMF NSGMV FKN+FTG E Y+ Sbjct: 1 MKTLNDIRSTFLGYFERHGHSVQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI +W+L+TKEF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RLY+TVY D+EA +WKK++GL ++IIRI T+DNFW M TGPCGPCSEIF+D G Sbjct: 121 DPKRLYVTVYHTDDEAADIWKKVAGLPDERIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQ+EQ R LP SIDTGMG+ER+A +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFPDGTRKPLPNQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL ++LI AS + +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 TNDNYATDLMRNLILASANASNTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +MG AYPEL QA+ LI ETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGIQDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD L L + L+G+ AFKLYDT+G P+D+ QD L + + +D+ F+ Sbjct: 361 KTLDRGLKLLDDELKGLPEGANLSGEAAFKLYDTYGFPVDLTQDALREQDRS-VDLEGFS 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E+Q++ ARA G G +WF + E G T F+GYD Sbjct: 420 AAMEKQKALARAAWSGSGEAADATVWFDVAENAGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A++Q G V+ A +G KV++ +QTPFYAE+GGQ+GDTG + Sbjct: 462 -----TETAEGQIVALIQDGAQVDAAKTGDKVQIALNQTPFYAESGGQVGDTGLIKTETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +TD +K A G+F+H V G + T + VL +D+ R + NHSATHLLH AL Sbjct: 517 SVTVTDTRKTA-GVFIHFGDVTEGTITTGQAAVLDVDHARRTSIRANHSATHLLHEALRN 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+ P+++ EL +E VN I QN PV TRIM +DA Sbjct: 576 ALGDHVAQRGSLNAADRLRFDYSHNSPMSAEELAQVEQEVNTYIRQNAPVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-------GVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I ++ Sbjct: 636 RGLGAQALFGEKYGDEVRVVSMGRQPGSGKGADKSTYSLELCGGTHVRQTGDIGAFVLLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +SS +G+RRIEA+TG A S L Q+ L +A+ LK S +V RV + +E R L Sbjct: 696 DSSSSSGVRRIEALTGTEALSWLRAQETALSRVAAELKTSTADVPDRVRALLDERRALAN 755 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ +R+L ++ + + DVN FM+ ++S V K+L +++D + K+ SG+++L Sbjct: 756 EVAQLRRELAMSGGGAAAPEARDVNGMKFMAQVLSGVTGKDLPALVDEYKAKLGSGVVLL 815 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + KA+V VT DL + +AVD+A+ + LGG GGGGRP MAQ G Sbjct: 816 IA-DADGKAAVAAGVTADLTSQVSAVDIAKAAVAELGGKGGGGRPDMAQGG 865 >gi|77464020|ref|YP_353524.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1] gi|123591443|sp|Q3J0R1|SYA_RHOS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|77388438|gb|ABA79623.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides 2.4.1] Length = 883 Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/874 (49%), Positives = 574/874 (65%), Gaps = 37/874 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 1 MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA ++WKK++GL ++IIRI TNDNFW M TGPCGPC+EIFFD G Sbjct: 121 PKEKLLVTVYHTDDEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS+ E+G+R+IEIWNLVFMQ EQ LPK SIDTGMGLER+ +LQ Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL + + LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ L HL + L G+ AFKLYDT+G PLD+ QD L +G +D+ F Sbjct: 361 QTLERGLRLLEDELGHLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF L E +GAT+F+GYD Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G A +GQ V+++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TEQAEGQVLALVAAGAETASAGAGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +ITDV KK +G+F+H A V G +R L +D+ R + NHSATHLLH AL Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRSAIRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +HS+ ++ EL ++E VN I N V TRIM+ +DA Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + DG +S LCGGTHVS G+I L I+ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGTDGQTYSLELCGGTHVSRLGDIGLCVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 +S+ AG+RRIEA+TG+ A ++L Q ++L +A+ LK + +V RV+ + EE R+LQ Sbjct: 696 DSASSAGVRRIEALTGEGALAYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755 Query: 772 -LIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + +R+ + S +I V F++ ++ V K++ ++D ++ ++ SG ++L+ Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 + KA++ VT DL DR +AV L + +A+ L Sbjct: 816 DTG-GKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848 >gi|205830243|sp|Q1GHA1|SYA_SILST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 883 Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/909 (48%), Positives = 591/909 (65%), Gaps = 39/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++ Y Sbjct: 1 MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+T EFD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY D+EAF++WKK+ G+ ++IIRI T+DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PKDKLYTTVYHTDDEAFEIWKKV-GVPEERIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQ E+ L SIDTGMGLER+A +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLFK+LI+AS VT + G+ V+HRVI DHLRS SFLIA+G+LP+NEGRGY Sbjct: 240 THDNYETDLFKYLIEASATVTKSEPYGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG T+P+M L+PAL ++MG+AYPEL Q + LIEET E+ RF Sbjct: 300 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD L K ++L G+ AFKLYDT G PLD+ QD L A+G+ +D F+ Sbjct: 360 KTLDRGLKLLDDASGDLEKGDVLPGETAFKLYDTFGFPLDLTQDALRAKGIE-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ++RA +GLG T K++F + + G T+F+GY+ Sbjct: 419 AAMKAQKEQSRAGGIGLGDATDVKVYFDIVDAEGTTEFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V+ G V+ A +G+ V+++ +QTPFY E+GGQ+GD+G +G Sbjct: 461 -----TEKAEGQIVALVKDGARVDSAKAGESVQIILNQTPFYGESGGQVGDSGMLTVEGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD KK EG+F+H A V G + + +D+ R Q+ NHSATHLLH AL Sbjct: 516 AARITDT-KKVEGLFLHIAEVTEGEIAVGSGAAMEVDHVRRSQIRANHSATHLLHEALRN 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++ +L I VND I QN V TRIM +DA Sbjct: 575 ALGDHVAQKGSLNAADRLRFDFSHNKAVSAEDLSKISAEVNDFIRQNSAVSTRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY + VRVVS+ + DG +S LCGGTHV TG+I I+ + Sbjct: 635 RALGAQALFGEKYGEEVRVVSMGRAPTGKGADGETYSIELCGGTHVKQTGDIGTFVILGD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A +HL + ++ +A+ LK +V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAAAFAHLEREAGRMAEVAASLKAQPADVMERLKALMDERKALQNE 754 Query: 774 HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K Q+ +I F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 755 IATLKQQIAMGGGAGGGAEAKEIGGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + + AD+A Sbjct: 815 A-EDDGKVAVAAGVTDDLTGEISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGADEA 873 Query: 889 IAGVASFLK 897 I + LK Sbjct: 874 IKAAEALLK 882 >gi|296535675|ref|ZP_06897850.1| alanine--tRNA ligase [Roseomonas cervicalis ATCC 49957] gi|296263999|gb|EFH10449.1| alanine--tRNA ligase [Roseomonas cervicalis ATCC 49957] Length = 881 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/895 (48%), Positives = 582/895 (65%), Gaps = 35/895 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR TFL++F ++GH ++ SS L+P NDPTLMFTNSGMV FKN+FTGQEK Y Sbjct: 1 MTSSNDIRATFLDYFARHGHTVVESSPLVPRNDPTLMFTNSGMVQFKNVFTGQEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI+ AW LLT++F L Sbjct: 61 ATTAQKSVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDQAIEHAWTLLTRDFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 + +L +TV+ EDE+A LW+KI+GL +KIIRI T+DNFW M +TGPCGPCSEIF+D Sbjct: 121 PKEKLLVTVFSEDEDAAALWRKIAGLPDEKIIRIPTSDNFWRMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+R+IEIWNLVFMQ+ ++ R LP+ SIDTGMGLER A +LQ Sbjct: 181 PSIPGGPPGSPDEDGDRFIEIWNLVFMQYLEEPAGTRNPLPRPSIDTGMGLERFAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYDID F+ LI AS + TG + +G ++HRV+ DHLRS +FLIADG++P+NEGRGY Sbjct: 241 KHDNYDIDTFRALILASAEATGQEADGPFKISHRVVADHLRSGAFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRAM +A ++G EPL+ LLPAL +MG+AYPEL++A+ LI ETL+ E+ RF Sbjct: 301 VLRRILRRAMRHAHMMGTKEPLLYRLLPALIRQMGAAYPELVRAEALISETLKLEENRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+RGL LL LG L GDVAFKLYDT+G PLD+ QD L G A +D+ F Sbjct: 361 SLLERGLGLLAEESGKLGDKGTLPGDVAFKLYDTYGFPLDLTQDALRGEGKA-VDVAGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+ RARA G G TE +WF LKEK GAT+F+GY Sbjct: 420 AAMAEQKKRARAAWAGSGEAATETLWFDLKEKLGATEFLGYS------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DG 538 T + A+V G +VE A G +V VV +QTPFYAE+GGQ+GDTG G DG Sbjct: 462 -----TEKAEGEILAVVANGAVVERAGPGTEVAVVLNQTPFYAESGGQVGDTGSITGADG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +R+ + D QKK G+FVH VE G + + ++ R + +HSATHLLH AL Sbjct: 517 LRIAVRDTQKKL-GLFVHLGTVEAGEAAPGKPVQAEVAHERRSAIRAHHSATHLLHEALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG+HV+Q GS PD LRFDV+ P+ +L +E VN I +N V+TR+M E Sbjct: 576 RRLGTHVAQKGSLNAPDRLRFDVSQPTPMQPEDLAWVEAEVNARIRENAEVITRLMTPEA 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A+ +GA AL G KY D VRVV + + E GV+S LCGGTHV TG+I L IV+E Sbjct: 636 AVQAGAMALFGEKYGDEVRVVGMGHDPEATEKHGVYSLELCGGTHVRRTGDIGLFKIVAE 695 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 ++ AG+RR+EA+TG A + + + + L+ A+ LKV+ + R+ + EE RKL+ Sbjct: 696 GAVSAGVRRVEAVTGAAALALIEAEQKALREAAAALKVNPAELPARIASLVEERRKLERD 755 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + ++KL + S ++ + F + + EV ++LK + +A+ K ++ LV + Sbjct: 756 VAELRKKLATGGSEASVEEVGGLRFSARNLGEVPPRDLKGLAEAILKSGTVDVVALVSTA 815 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 E KAS++ V + R +AV L R + +GG GGGGRP MAQ+GGP+ +KA+ Sbjct: 816 -EGKASLVAGVADSAKGRADAVALVRAGSAAVGGKGGGGRPDMAQAGGPDADKAE 869 >gi|99081073|ref|YP_613227.1| alanyl-tRNA synthetase [Ruegeria sp. TM1040] gi|99037353|gb|ABF63965.1| alanyl-tRNA synthetase [Ruegeria sp. TM1040] Length = 902 Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/909 (48%), Positives = 591/909 (65%), Gaps = 39/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++ Y Sbjct: 20 MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 79 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+T EFD+ Sbjct: 80 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 139 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY D+EAF++WKK+ G+ ++IIRI T+DNFW M +TGPCGPC+EIF+D G Sbjct: 140 PKDKLYTTVYHTDDEAFEIWKKV-GVPEERIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 198 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQ E+ L SIDTGMGLER+A +LQ Sbjct: 199 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 258 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLFK+LI+AS VT + G+ V+HRVI DHLRS SFLIA+G+LP+NEGRGY Sbjct: 259 THDNYETDLFKYLIEASATVTKSEPYGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 318 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG T+P+M L+PAL ++MG+AYPEL Q + LIEET E+ RF Sbjct: 319 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 378 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD L K ++L G+ AFKLYDT G PLD+ QD L A+G+ +D F+ Sbjct: 379 KTLDRGLKLLDDASGDLEKGDVLPGETAFKLYDTFGFPLDLTQDALRAKGIE-VDTDGFD 437 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ++RA +GLG T K++F + + G T+F+GY+ Sbjct: 438 AAMKAQKEQSRAGGIGLGDATDVKVYFDIVDAEGTTEFLGYE------------------ 479 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V+ G V+ A +G+ V+++ +QTPFY E+GGQ+GD+G +G Sbjct: 480 -----TEKAEGQIVALVKDGARVDSAKAGESVQIILNQTPFYGESGGQVGDSGMLTVEGG 534 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD KK EG+F+H A V G + + +D+ R Q+ NHSATHLLH AL Sbjct: 535 AARITDT-KKVEGLFLHIAEVTEGEIAVGSGAAMEVDHVRRSQIRANHSATHLLHEALRN 593 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++ +L I VND I QN V TRIM +DA Sbjct: 594 ALGDHVAQKGSLNAADRLRFDFSHNKAVSAEDLSKISAEVNDFIRQNSAVSTRIMTPDDA 653 Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY + VRVVS+ + DG +S LCGGTHV TG+I I+ + Sbjct: 654 RALGAQALFGEKYGEEVRVVSMGRAPTGKGADGETYSIELCGGTHVKQTGDIGTFVILGD 713 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A +HL + ++ +A+ LK +V+ R++ + +E + LQ Sbjct: 714 SASSAGVRRIEALTGAAAFAHLEREAGRMAEVAASLKAQPADVMERLKALMDERKALQNE 773 Query: 774 HAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A K Q+ +I F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 774 IATLKQQIAMGGGAGGGAEAKEIGGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 833 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + + AD+A Sbjct: 834 A-EDDGKVAVAAGVTDDLTGEISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGADEA 892 Query: 889 IAGVASFLK 897 I + LK Sbjct: 893 IKAAEALLK 901 >gi|114771071|ref|ZP_01448511.1| alanyl-tRNA synthetase [alpha proteobacterium HTCC2255] gi|114548353|gb|EAU51239.1| alanyl-tRNA synthetase [alpha proteobacterium HTCC2255] Length = 885 Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/910 (50%), Positives = 594/910 (65%), Gaps = 38/910 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +V+ IR+TFL+FF+KN H ++ SS L+P NDPTLMFTNSGMV FKN F GQE Y Sbjct: 1 MVSVNDIRSTFLDFFEKNNHTVVDSSPLVPRNDPTLMFTNSGMVQFKNQFLGQEIRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AWDL+TKEF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIIYAWDLITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+TVY D+EA +WKK +GLS D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKNRLYVTVYHTDDEAANIWKKYAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PGS EE G+R+IEIWN+VFMQ EQ + L SIDTGMGLER+A +LQ Sbjct: 181 ESVFGGPPGSPEEDGDRFIEIWNVVFMQNEQFSDGTLKPLKMQSIDTGMGLERIAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DL + LI+AS Q TG+ G+ ++HRVI DHLRS+SFLI+DGILP+NEGRGY Sbjct: 241 SHDNYDTDLMRDLIEASAQATGVDPYGDQNLHHRVIADHLRSTSFLISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL ++MG AYPEL A+ LIEE+L E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPIMHQLVPALVSQMGQAYPELGHAQSLIEESLLLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLDRGL LLD L+G AFKLYDT G PLD+ QD L +G+ +D+ FN Sbjct: 361 TTLDRGLKLLDEETGVFASGATLSGKTAFKLYDTFGFPLDLTQDALREKGV-DVDVDGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA +G G E IWF + +K+G T F+GYD Sbjct: 420 DAMSEQKAKARAAWVGSGEVADEGIWFDIADKHGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A++Q G IV + G V VV +QTPFYAE+GGQ+ D G + Sbjct: 462 -----TQTSEGQILALLQDGNIVNKVSEGDDVMVVLNQTPFYAESGGQIADNGSINVEKN 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ITDV+KKA G+F+H V G + S L+++ + R + +H+ATHLL+ AL + Sbjct: 517 EIIITDVKKKA-GVFIHIGRVVFGEISNGSSAELSVNTEMRSGICNSHTATHLLNEALRS 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG H++Q GS + LRFD +HSK +T +EL+ +E VN++I QN V TRIM EDA Sbjct: 576 KLGQHIAQRGSLNAENRLRFDFSHSKSMTQSELRDVELEVNNLIRQNSSVKTRIMTPEDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I +++ Sbjct: 636 RELGAQALFGEKYGDEVRVVSMGNKKDSGKGLAGNTYSLELCGGTHVQRTGQIGAFALIA 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 ES+ G+RRIEA TG+ A H Q + + LAS K NV+ RV+ + +E + LQ Sbjct: 696 ESASAGGVRRIEAFTGKTAELHHAEQSKIMNELASIFKTKTENVIDRVKSLIDERKLLQS 755 Query: 772 -LIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 +I+ ++ + + D S + KI + NF +V SK+L+S++D + ++ SGII+L+ Sbjct: 756 EIINLRKAVAMGSNDDSQNILKINNFNFYVQTFDDVPSKDLRSLVDEHKNRLGSGIILLI 815 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 KA++ VT DL D+ NAVDL ++ A LGG GGGGRP MAQ+GG + +A Sbjct: 816 S-GAGGKAAISAGVTSDLTDQINAVDLVKIVAVELGGKGGGGRPDMAQAGGNDMANVKKA 874 Query: 889 IAGVASFLKK 898 I+ V +FLK+ Sbjct: 875 ISLVENFLKE 884 >gi|149184401|ref|ZP_01862719.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. SD-21] gi|148831721|gb|EDL50154.1| AlaS, alanyl-tRNA synthetase [Erythrobacter sp. SD-21] Length = 887 Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/909 (47%), Positives = 598/909 (65%), Gaps = 36/909 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR +FL+FF H +PS+ L+P +DPTLMF N+GMVPFKN FTG E P Sbjct: 1 MTSTNEIRRSFLDFFASKDHAEVPSAPLVPFSDPTLMFVNAGMVPFKNAFTGLETPPAPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLTK++ L Sbjct: 61 ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIDHAWTLLTKDWGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY D+EAF LWKK +G + ++IIRI T DNFW+M GPCGPCSEIF+D G Sbjct: 121 DKDRLLVTVYHTDDEAFDLWKKRTGFADERIIRIPTKDNFWAMGSDGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQF Q+ + LPK SIDTGMG+ER+A V+Q Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQFTQEADEIVGDLPKPSIDTGMGIERVAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D FK LI ASE +TG+K EG+ +HRVI DHLRS+SFL+ADG+LP+NEGRGY Sbjct: 241 VHDNYDTDTFKALIGASEALTGVKAEGDRQASHRVIADHLRSTSFLLADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG ++PLM L+P L +EMG+AYPEL++ + LI+E L E+ +F Sbjct: 301 VLRRIMRRAMRHAHLLGASQPLMHRLVPELVSEMGAAYPELVRGQALIQEVLEREETQFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLD+GL LLD +G+ L+G AFKLYDT+G P D+ +D L RG+ G+D F+ Sbjct: 361 RTLDKGLKLLDEATGDMGEGGTLDGGTAFKLYDTYGFPYDLTEDALRNRGI-GVDKDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ +Q++ ARA G G +E++WF + E+ G+T+F GY G Sbjct: 420 AAMAQQKAAARAAWKGSGEAASEEVWFDIAEREGSTEFTGYSSDTG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538 + V A+V+ G+ V+ A G+ V ++ +QTPFY E+GGQ GD G +G Sbjct: 466 ---------EAEVVALVKDGKEVDSAGEGEDVIILTNQTPFYGESGGQTGDAGRIWTPEG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +++ K + H A + +G ++ ++ ID + R ++ NHSATHL+H AL Sbjct: 517 LEAKVSTTNKPLGRLHTHVATIAKGNVKVGDAVHFEIDAERRDRIRANHSATHLVHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS ++ D RFD +H KP++ ++ +IE VN+ I N V TR+M +D Sbjct: 577 NRLGGHVTQKGSLVSDDRFRFDFSHPKPLSDEDIAAIEAEVNEEIRANETVGTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYE--DGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A+A+GA AL G KY D VRV+S+ + +G +S LCGGTHV +TG+I L IVSES++ Sbjct: 637 AVAAGALALFGEKYGDEVRVLSMGRKGGEGKNYSVELCGGTHVEATGDIGLFKIVSESAV 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEA+TG+ AR L+ +DE ++++A+ LK S RV + +E ++L +L Sbjct: 697 SSGVRRIEALTGEAARQWLLARDETVRAIAAALKTSPDEAATRVSALVDERKRLEKELAE 756 Query: 775 AKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 AKR + +I V F +I + K+L+ ++D + ++ SG+ + Sbjct: 757 AKRALALGGGGAGDAAAADEEIGGVKFSGQVIEGLSPKDLRPLLDEAKTRMGSGVAAICA 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K + + VT+DL +RF+AVD R + LGG GGGGRP MAQ GGP+G+KA+ AI Sbjct: 817 VN-EGKGAFAVAVTDDLTERFSAVDFVRAGVEALGGRGGGGRPDMAQGGGPDGSKAEDAI 875 Query: 890 AGVASFLKK 898 A V L K Sbjct: 876 AAVRDALAK 884 >gi|221639882|ref|YP_002526144.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides KD131] gi|221160663|gb|ACM01643.1| Alanyl-tRNA synthetase [Rhodobacter sphaeroides KD131] Length = 883 Score = 828 bits (2140), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/874 (49%), Positives = 572/874 (65%), Gaps = 37/874 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 1 MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA ++WKK++GL ++IIRI TNDNFW M TGPCGPC+EIFFD G Sbjct: 121 PKEKLLVTVYHTDDEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS+ E+G+R+IEIWNLVFMQ EQ LPK SIDTGMGLER+ +LQ Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL + + LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGTQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ L HL L G+ AFKLYDT+G PLD+ QD L +G +D+ F Sbjct: 361 QTLERGLRLLEDELGHLPDGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF L E +GAT+F+GYD Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G A GQ V+++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TEQAEGQVLALVAAGAETASAGVGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +ITDV KK +G+F+H A V G +R L +D+ R + NHSATHLLH AL Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRAAIRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +HS+ ++ EL ++E VN I N V TRIM+ +DA Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + DG +S LCGGTHVS G+I L I+ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGADGQTYSLELCGGTHVSRLGDIGLCVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 +S+ AG+RRIEA+TG+ A ++L Q ++L +A+ LK + +V RV+ + EE R+LQ Sbjct: 696 DSASSAGVRRIEALTGEGALAYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755 Query: 772 -LIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + +R+ + S +I V F++ ++ V K++ ++D ++ ++ SG ++L+ Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 + KA++ VT DL DR +AV L + +A+ L Sbjct: 816 DTG-GKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848 >gi|126462865|ref|YP_001043979.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029] gi|205830188|sp|A3PLJ1|SYA_RHOS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126104529|gb|ABN77207.1| alanyl-tRNA synthetase [Rhodobacter sphaeroides ATCC 17029] Length = 883 Score = 827 bits (2135), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/874 (49%), Positives = 571/874 (65%), Gaps = 37/874 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL++F++NGH ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 1 MPSLNDIRSTFLDYFRRNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGLEHRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTKDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D EA ++WKK++GL ++IIRI TNDNFW M TGPCGPC+EIFFD G Sbjct: 121 PKEKLLVTVYHTDHEAAEIWKKVAGLPDERIIRIPTNDNFWMMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS+ E+G+R+IEIWNLVFMQ EQ LPK SIDTGMGLER+ +LQ Sbjct: 181 PSIWGGPPGSADEDGDRFIEIWNLVFMQNEQHPDGSMTPLPKQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL + + LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAQDPVMHRLVPALVRQMGAAYPELTRGQALIEETLKLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ L HL + L G+ AFKLYDT+G PLD+ QD L +G +D+ F Sbjct: 361 QTLERGLRLLEDELGHLPEGSPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDVEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF L E +GAT+F+GYD Sbjct: 420 AAMAEQKAKARASWSGSGETKDAAIWFDLAETHGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G GQ V+++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TEQAEGQVLALVAAGAETASVGVGQTVQIILNQTPFYAESGGQVGDTGELRTDTG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +ITDV KK +G+F+H A V G +R L +D+ R + NHSATHLLH AL Sbjct: 517 RARITDV-KKGQGLFLHFAEVVEGEIRQGQGATLVVDHARRSAIRANHSATHLLHEALRR 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +HS+ ++ EL ++E VN I N V TRIM+ +DA Sbjct: 576 ALGDHVAQRGSLNAPDRLRFDFSHSRALSPEELAAVEAEVNGFIRSNGAVETRIMSPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + DG +S LCGGTHVS G+I L I+ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTLAGSGKGTDGQTYSLELCGGTHVSRLGDIGLCVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 +S+ AG+RRIEA+TG+ A ++L Q ++L +A+ LK + +V RV+ + EE R+LQ Sbjct: 696 DSASSAGVRRIEALTGEGALTYLNEQMKRLTDVAAALKAAPAELVDRVKALVEERRQLQN 755 Query: 772 -LIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + +R+ + S +I V F++ ++ V K++ ++D ++ ++ SG ++L+ Sbjct: 756 EVAQLRREAAMGGGAASEAKEIGGVKFLAQVVQGVPGKDMPGLIDEMKARVGSGAVLLIS 815 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 + KA++ VT DL DR +AV L + +A+ L Sbjct: 816 DTG-GKAALAAGVTPDLTDRLSAVTLVKAAAEAL 848 >gi|85703236|ref|ZP_01034340.1| alanyl-tRNA synthetase [Roseovarius sp. 217] gi|85672164|gb|EAQ27021.1| alanyl-tRNA synthetase [Roseovarius sp. 217] Length = 892 Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/894 (48%), Positives = 578/894 (64%), Gaps = 40/894 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL FF++N H ++ SS L+P NDPTLMFTNSGMV FKN FTG E Y Sbjct: 1 MPTLNEIRSTFLSFFERNDHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGVEHREYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AWDLLTK+F + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EA +WKK +GLS D+IIRI T+DNFWSM TGPCGPC+EIF+D G Sbjct: 121 DKSKLLVTVYHTDDEAATIWKKYAGLSDDRIIRIKTDDNFWSMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+EE G+R+IEIWNLVFMQ E+ L SIDTGMGLER+ +LQ Sbjct: 181 DSIWGGPPGSAEEDGDRFIEIWNLVFMQNERFEDGTMRALDMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G V+HRVI DHLRS+SFL+ADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSQDPDGPGRVHHRVIADHLRSTSFLMADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL +MG A+PEL +A+ +IEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHMLGAKDPVMYRLVPALVAQMGQAFPELGRAQAMIEETLRLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD L+ L L G AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 361 QTLERGLRLLDDELTALDDSAALPGATAFKLYDTYGFPLDLTQDALREKGRE-VDTAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G + +WF + E+ AT F+GYD Sbjct: 420 AAMAEQKAKARAAWSGTGEAADQAVWFDISEQVSATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + V AIV +G+ V+ G V+F+QTPFYAE+GGQ+GD G +G + Sbjct: 462 -----TEVSEAQVVAIVSEGKRVDAIEPGGTGWVIFNQTPFYAESGGQVGDQGRLVGKAV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 I+D +K G+F H + G L MS+ L +D+ R + NHSATHLLH AL Sbjct: 517 SGSISDTKKFPGGLFGHLFTPDEGRLGVGMSVKLEVDHSRRNAIRANHSATHLLHEALRK 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++AEL+ +E VN+ I QN PV TRIM +DA Sbjct: 577 ALGEHVAQRGSLNAEDRLRFDFSHAKALSTAELERVESEVNEFIRQNAPVETRIMTPDDA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ E DG +S LCGGTHV TG+I + + Sbjct: 637 RALGAQALFGEKYGDEVRVVSMGAEAGSGKGADGRTYSIELCGGTHVRRTGDIGVFVALG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +++ AG+RRIEA+TG A +L GQ +L +AS LK +V RV+ + +E R L Sbjct: 697 DAASSAGVRRIEALTGAAAFDYLSGQAARLGQVASELKARPEDVADRVKALMDERRALAN 756 Query: 771 QLIHAKRKLQLN-----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 ++ +R+L ++ + + V ++ +++ V K+L ++D + ++ SG + Sbjct: 757 EVAQLRRELAMSGGAAQGGTVEARDVGGVKLIAQVMTGVQGKDLPPLIDEHKARLGSGAV 816 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +L+ + K A V VT+DL R +AV++ R++ LGG GGGGRP MAQ GG Sbjct: 817 LLIADTGGKVA-VAAGVTDDLTGRLSAVEMVRVAVVELGGKGGGGRPDMAQGGG 869 >gi|254292635|ref|YP_003058658.1| alanyl-tRNA synthetase [Hirschia baltica ATCC 49814] gi|254041166|gb|ACT57961.1| alanyl-tRNA synthetase [Hirschia baltica ATCC 49814] Length = 897 Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/908 (48%), Positives = 591/908 (65%), Gaps = 37/908 (4%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 ++V+ +R+ FLE+F NGHE++ S+ L+P D TL+F N+GMVPFKN+FTG E P + Sbjct: 14 NSVNGVRSQFLEYFNSNGHEVVQSAPLVPQGGDSTLLFVNAGMVPFKNLFTGAETPAFLK 73 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+++TK F L Sbjct: 74 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIVHAWNVVTKVFGL 133 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +TV+ ED+EA LWKKI+GLS DKIIRI+T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 134 PVDKLVVTVFSEDDEAAMLWKKIAGLSDDKIIRISTSDNFWSMGDTGPCGPCSEIFYDHG 193 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS EE G+R+IEIWNLVFMQF+Q R LPK SIDTGMGLER+A VLQ Sbjct: 194 PDVWGGPPGSPEEDGDRFIEIWNLVFMQFDQSKDGSRVSLPKPSIDTGMGLERIAAVLQG 253 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNY+IDLF++LI A E V G+K + + RVI DHLRSS+FLIADG+ P+NEGRGY Sbjct: 254 VHNNYEIDLFQNLIAAEEDVYGLKQSEKTLGSLRVISDHLRSSAFLIADGVTPSNEGRGY 313 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG EP M L+PAL EMG A+PEL +A+ I TL E+ RF Sbjct: 314 VLRRIMRRAMRHGHLLGSKEPQMHKLVPALVAEMGVAFPELGRAQASIVSTLEQEEGRFQ 373 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL RGL LL+ S +GK ++L G+ AFKLYDT G P+D+ QD+L A+G+ +D + F Sbjct: 374 RTLGRGLALLEDATSSMGKGDVLPGETAFKLYDTFGFPVDLTQDVLRAKGIE-VDEVGFE 432 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A++ QR ++A G G K+WF ++ +GAT+FIGY Sbjct: 433 KAMKVQRESSQASWQGAAEGDAVKVWFQTRDAHGATEFIGYS------------------ 474 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538 + +K I+ GE+ A GQK E+VFD+TPFY E+GGQ GD G G Sbjct: 475 -----EEASEAELKTIIIDGELATTANEGQKAELVFDKTPFYGESGGQAGDRGEVRFAGG 529 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ D QK+A +F H + G ++ + +L +D R + NHSATH+LH AL Sbjct: 530 AVFRVLDTQKRAGDVFSHIGEMVTGDIKAGVKALLEVDSVRRSNIRSNHSATHILHAALR 589 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS + D LRFD HS ++ EL IE VN +I QN V T+ M + Sbjct: 590 NNLGDHVTQKGSLVEEDKLRFDFAHSGTLSQVELDKIEAEVNAVIRQNSEVSTKEMAPDA 649 Query: 659 AIASGAAALLGTKYNDRVRVVSV-EYEDGG--VHSSALCGGTHVSSTGEIMLLYIVSESS 715 AI +GA AL G KY D VRV+++ E +GG +S LCGG HV TG+I + I SES Sbjct: 650 AIEAGAMALFGEKYGDSVRVLAMGEALEGGDKAYSVELCGGIHVRRTGDIAVFAITSESG 709 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + AG+RRIEA+TG A +L G+ +S+A LK + RV + ++ R L +L Sbjct: 710 VSAGVRRIEAVTGAAALEYLKGKVAIARSIADQLKSTIEKAPERVAALQDQKRALENELS 769 Query: 774 HAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 AK+KL + +I + ++ + V +K+L+ ++D +K++ SG+ + V Sbjct: 770 DAKKKLAMGASAGGAAAGPEEINGIKLLTRVADGVPAKDLRGLIDDAKKQLGSGVTVFVA 829 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + KA+V VT+DL D+ +AVDL +++A +GG GGGGRP MAQ+GGP+G+KA+ A+ Sbjct: 830 VN-DGKAAVATGVTDDLKDKISAVDLVKVAAAAVGGKGGGGRPDMAQAGGPDGSKANDAV 888 Query: 890 AGVASFLK 897 V +FLK Sbjct: 889 DAVRAFLK 896 >gi|126729804|ref|ZP_01745617.1| alanyl-tRNA synthetase [Sagittula stellata E-37] gi|126709923|gb|EBA08976.1| alanyl-tRNA synthetase [Sagittula stellata E-37] Length = 890 Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/901 (49%), Positives = 578/901 (64%), Gaps = 52/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL +F+K GH+++PSS L+P NDPTLMF NSGMV FKN FTG EK Y Sbjct: 1 MASLNDIRSTFLNYFEKQGHQIVPSSPLVPRNDPTLMFVNSGMVQFKNRFTGVEKGDYDR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI A++L+T+EF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAYELITREFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ R+Y TVY D+EAF++WKK+ G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKNRIYTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS EE G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 PEVWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMKALDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS Q T + +G ++HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 KHDNYDTDLMRSLIEASAQATSVDPDGPGKMHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL +MG+AYPEL + + +IEETL SE+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAQDPLMHRLVPALVRQMGTAYPELSRGQAMIEETLLSEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD LS LG D L G+ AFKLYDT G PLD+ QD L +G + +DI F+ Sbjct: 360 QTLDRGLKLLDEELSGLGDDAALPGETAFKLYDTFGFPLDLTQDALREKGRS-VDIEGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ++RARA G G +W+ + E +GAT F+GYD Sbjct: 419 AAMAEQKARARAAWSGSGDAADTAVWYDIAETHGATDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G +V G+K +V +QTPFY E+GGQ+GDTG Sbjct: 461 -----TEQAEGQVLALVKDGALVTSLAEGEKGWIVLNQTPFYGESGGQVGDTGWL----R 511 Query: 540 RLQ-------ITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 RL+ + D QK G +F H V +G +L L +D+ R + NHSATH Sbjct: 512 RLEDEHEIATVEDTQKMGGGKVFAHLVKVNKGTFAKGDALALEVDHGRRSSIRANHSATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS PD LRFD +H K ++++E+K++E +VN I QN PV T Sbjct: 572 LLHEALREALGDHVAQRGSLNAPDRLRFDFSHGKALSASEIKNVERDVNAYIRQNTPVST 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGE 704 R+M +DA A GA AL G KY D VRVVS+ + DG +S LCGGTHV TG+ Sbjct: 632 RLMTPDDARAIGAQALFGEKYGDEVRVVSMGAKPGSGKGADGATYSLELCGGTHVRQTGD 691 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + +S+ AG+RRIEA+TGQ A HL Q + L ++A+ +K V RV + Sbjct: 692 IGAFVCLGDSASSAGVRRIEALTGQLALDHLAQQGQTLAAVAAEMKAPASEVPARVRTLL 751 Query: 765 EEYRKLQLIHAKRKLQLNVE------DLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 EE RKL+ A + +L + +I V F++ +++ V K+L ++D + Sbjct: 752 EERRKLESEVASLRRELAMSGGGQGAGPEAEEIGGVKFLAQVLTGVTGKDLPPLIDEHKS 811 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 ++ SG ++L+ KA+V VT+DL +AVDL + + LGG GGGGRP MAQ G Sbjct: 812 RLGSGAVLLI-ADAGGKAAVAAGVTDDLKGTLSAVDLVKAAVPELGGKGGGGRPDMAQGG 870 Query: 879 G 879 G Sbjct: 871 G 871 >gi|329890683|ref|ZP_08269026.1| alanyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568] gi|328845984|gb|EGF95548.1| alanyl-tRNA synthetase [Brevundimonas diminuta ATCC 11568] Length = 881 Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/905 (47%), Positives = 582/905 (64%), Gaps = 33/905 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+++ IR+TFL++F +GHE + S+ L+P NDPTL+F N+GMVPFK+ FTG P Y+ Sbjct: 1 MTSLKQIRSTFLDYFAADGHEKVQSAPLVPQNDPTLLFVNAGMVPFKDYFTGAAVPPYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LLTKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDHAIESAWGLLTKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RL +TVY D++AF +WKK++G + +KIIRI TNDNFW+M ++GPCGPC+EIF+D G Sbjct: 121 DPARLLVTVYHTDDQAFDIWKKVTGFADEKIIRIPTNDNFWAMGDSGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R++EIWN VFMQFE++N + LPK S+DTGMGLER+A VLQ Sbjct: 181 DHIFGGPPGSPDEDGDRFVEIWNNVFMQFEKENDEIVRELPKKSVDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD+DLFK LI ASE++T K EG +HRVI DHLRS++FLIADG+ P+NEGRGY Sbjct: 241 VHSNYDVDLFKSLINASEELTSTKAEGERAPSHRVIADHLRSTAFLIADGVTPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L EMG AYPEL +A+ IE+TL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAADPLMHRLVPTLVQEMGEAYPELGRAQAFIEDTLKQEEIRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RG+ L D + ++L+G AF LYDT+G PLD+ QD RG + +++ F Sbjct: 361 TTLGRGMNLFDQATTGFKAGDMLDGQTAFTLYDTYGFPLDLTQDEARRRGFS-VNVDGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQR R+R H G G + W +L++++G T+F GY+ G + KVL Sbjct: 420 SAMAEQRDRSREHWKGSGQTASAGAWLALRDQHGGTEFTGYESETG------EGKVL--- 470 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 AIV+ G A +G+ VEV+ D+TPFY E GGQ GD G + G Sbjct: 471 --------------AIVKDGAEAASAATGETVEVLLDKTPFYGEGGGQAGDKGAFVWSGG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D +K + VH V +G L + T++ +R NHSA HL H A+ Sbjct: 517 EGRVLDTKKHGGDLHVHTLEVTKGALAAGAVVTATVEEGSRPTTRANHSAAHLFHAAVKN 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q G + + +RFD +H+ P+T E+ +ED VN +I QN+PV T +M + A Sbjct: 577 VLGAHVAQKGQMVDAERMRFDFSHNAPMTDEEIARVEDEVNAVIRQNVPVTTELMTPDAA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 IA+GA AL G KY D VRV+++ G +S LCGGTHV TG+I L IVSE + Sbjct: 637 IAAGAVALFGEKYGDEVRVLTIGRALSGPGAYSVELCGGTHVFRTGDIALFKIVSEGGVA 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RR+EA+TG+ AR L+ Q +SLA K+ V RVE + + L+ A Sbjct: 697 AGVRRVEALTGEAARRFLLDQANVARSLAQGFKIQTAEVPARVEGLQASVKTLEKQVADL 756 Query: 778 KLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + + +I + M+ ++ VD K L+ V + +K+I SG++ LVG+ Sbjct: 757 KKQLALGGGAGANAAPEEIGGIKLMARVLDGVDGKGLRGVAEDFKKQIGSGVVALVGVV- 815 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + KA++ + T D+ + NA DLAR + +GG G GG+P AQ G P+G+KA+ + + Sbjct: 816 DGKAAITVAATPDMAGKVNAADLARDAVIAMGGKGAGGKPDFAQGGAPDGSKAEDGLNAI 875 Query: 893 ASFLK 897 + LK Sbjct: 876 RAALK 880 >gi|254465088|ref|ZP_05078499.1| alanyl-tRNA synthetase [Rhodobacterales bacterium Y4I] gi|206685996|gb|EDZ46478.1| alanyl-tRNA synthetase [Rhodobacterales bacterium Y4I] Length = 883 Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/893 (48%), Positives = 579/893 (64%), Gaps = 39/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F KNGHE++ SS L+P NDPTLMFTNSGMV FKN FTG E Y+ Sbjct: 1 MPTLNDIRSTFLNYFAKNGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVETREYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEFD+ Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TVY D+EAF++WKK+ G+ D+IIRI T+DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PKDRLYTTVYHTDDEAFEIWKKM-GVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQ E+ L SIDTGMGLER+A +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGTMVDLDMQSIDTGMGLERIAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLF+ LI+AS T G+ V+HRVI DHLRS SFLIA+G+LP+NEGRGY Sbjct: 240 THDNYETDLFRSLIEASANATNTDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+P+L +MG+AYPEL Q + LIEET E+ RF Sbjct: 300 VLRRIMRRAMRHASLLGANDPVMHKLVPSLVQKMGAAYPELGQGQALIEETFEQEETRFL 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD + LGK ++L G+ AFKLYDT+G PLD+ QD L A+ + +D F+ Sbjct: 360 KTLDRGLKLLDEASAGLGKGDVLPGETAFKLYDTYGFPLDLTQDALRAKEIE-VDTGGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ++RA +GLG K++F + + G T F+GY+ Sbjct: 419 AAMKAQKEQSRAGGIGLGEAADVKVYFDIVDAAGTTDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + AIV+ G ++ A G V+++ +QTPFY E+GGQ+GD+G G Sbjct: 461 -----TEKAEGQIVAIVKDGAQLQSAAKGDTVQIILNQTPFYGESGGQVGDSGVLTVAGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD KK EG+F+H A V G + + +D+ R ++ NHSATHLLH AL Sbjct: 516 AARITDT-KKVEGLFLHLAEVTEGEVAVGQGAAMEVDHDRRSKIRANHSATHLLHEALRN 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++ EL + VND I QN PV TRIM +DA Sbjct: 575 ALGEHVAQKGSLNAADRLRFDFSHNKAMSAEELAKVGAEVNDFIRQNTPVSTRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 GA AL G KY D VRVVS+ + DG +S LCGGTHV TG+I I+ + Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRAATGKGHDGDTYSIELCGGTHVKQTGDIGTFVILGD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 S+ AG+RRIEA+TG A HL + ++ +A+ LK V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAAAVEHLEREAGRMAEVAAALKAQPAEVLDRLKAMMDERKALQNE 754 Query: 772 LIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + K+++ + + DVN F++ + V K+L+ ++D ++ I SG+I+L+ Sbjct: 755 ISNLKQQIAMGGGSGGGAEAKDVNGKKFLAQALKGVSGKDLRGLIDKHKQNIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + Sbjct: 815 A-EEDGKVAVAAGVTDDLTGEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866 >gi|330993337|ref|ZP_08317272.1| Alanyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1] gi|329759367|gb|EGG75876.1| Alanyl-tRNA synthetase [Gluconacetobacter sp. SXCC-1] Length = 861 Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/883 (48%), Positives = 568/883 (64%), Gaps = 33/883 (3%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 +PSSSL+P NDPTL+FTN+GMV FKN+FTGQE Y TT QK VRAGGKHNDLDNVG Sbjct: 1 MPSSSLVPHNDPTLLFTNAGMVQFKNVFTGQETRPYSRATTAQKVVRAGGKHNDLDNVGY 60 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK 142 T RHHTFFEM+GNFSFG YFK AI+LAW L+T F L + +L TVY +DEEA LW++ Sbjct: 61 TARHHTFFEMMGNFSFGDYFKAEAIELAWKLVTGTFGLPKEKLLTTVYADDEEAASLWRR 120 Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS-EEGERYIEIW 201 I+GLS D+IIRI T+DNFW M +TGPCGPCSEIF+D G + GG PGS E+G+R+ EIW Sbjct: 121 IAGLSDDRIIRIPTSDNFWRMGDTGPCGPCSEIFYDHGPEVAGGPPGSPDEDGDRFTEIW 180 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 NLVFMQ+ + R LP+ SIDTG+GLER A +LQ K +NYD D F+ LI AS +VTG Sbjct: 181 NLVFMQYFENPPGTRSPLPRPSIDTGLGLERFAAILQGKRDNYDTDTFRALILASAEVTG 240 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 +G +HRV+ DHLRS+SFLIADG+LP+ +GRGYVLRRIMRRAM + ++G TEP Sbjct: 241 QDPDGPFNASHRVVADHLRSTSFLIADGVLPSKDGRGYVLRRIMRRAMRHLHMMGTTEPT 300 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+PAL +MG AYPEL+ A+ LIE T++ E+ERF LDRGL LL LG Sbjct: 301 FYKLVPALIRQMGEAYPELVHARALIEGTMKGEEERFKAMLDRGLSLLADETERLGDGAP 360 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLA-GIDIISFNQALEEQRSRARAHSLGLGSGT 440 L GDVAFKLYDT G PLD+ QD L RG + +D+ FN A+E QR RARA G G Sbjct: 361 LPGDVAFKLYDTFGFPLDLTQDAL--RGSSHNVDVAGFNAAMEVQRKRARAAWSGSGDSA 418 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 TE +WF ++ +GAT+F+GY T + V+ ++ Sbjct: 419 TETVWFEARDTFGATEFLGY-----------------------TTETSDAEVQTVIVDNA 455 Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560 VE A G KV ++ +QTPFY E+GGQ+GDTG G+ + ITD QKK + VH+ V Sbjct: 456 QVESAGPGTKVALLLNQTPFYGESGGQVGDTGTITAPGLHIAITDTQKKLGDLLVHYGTV 515 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 G ++ M++ +D+ R + +HSATHLLH A+ LG+HV+Q GS PD LRFD Sbjct: 516 IEGTVKPGMAVTAQVDHDRRSAIRAHHSATHLLHEAMRRRLGAHVTQKGSLNAPDRLRFD 575 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680 V+ +PIT EL IE VN I +N V TR M E+AI GA AL G KY D VRVVS Sbjct: 576 VSQPRPITPEELADIEAEVNARIRENTDVTTRHMTPEEAIEQGAMALFGEKYGDEVRVVS 635 Query: 681 VEYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 + + G S LCGGTHV TG+I L I SES + +G+RRIEA+TG A++ + Sbjct: 636 MGGPEEGRAGWSIELCGGTHVRRTGDIGLFRITSESGVSSGVRRIEAVTGLAAQNATIAT 695 Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVE-DLSCHKIADVN 795 +E+L +A+ L+V R+ + EE + + Q+ +RKL + S + + Sbjct: 696 EERLNQIAAMLRVPPAETPERLAVLLEERKVMERQISDLQRKLASGSQAAASIVDVGGIK 755 Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855 + + E+ +KELK + D+L+K+I SG+I+L+ + + K S+++ T DL ++ +AV L Sbjct: 756 LDARNVGELPAKELKPLADSLRKEIGSGVIVLISTA-DGKGSIVVAATPDLGEKVDAVAL 814 Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 R ++ +GG GGGGR MAQ+GGP+ + + A+ V + L++ Sbjct: 815 VRAASTAMGGKGGGGRRDMAQAGGPDTTRVEAALEAVRAALQQ 857 >gi|329114349|ref|ZP_08243111.1| Alanyl-tRNA synthetase [Acetobacter pomorum DM001] gi|326696425|gb|EGE48104.1| Alanyl-tRNA synthetase [Acetobacter pomorum DM001] Length = 898 Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/886 (48%), Positives = 575/886 (64%), Gaps = 31/886 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IRT FLE+F NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE Y Sbjct: 18 MLTTNEIRTAFLEYFASNGHQIVPSSSLVPKNDPTLLFTNAGMVQFKNVFTGQETRPYSR 77 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK AI+ AW+L+TK F+L Sbjct: 78 ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWNLVTKGFNL 137 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TV+ EDE+A LW+ I+GL +IIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 138 PKDKLLVTVFAEDEDAAGLWRSIAGLDDSRIIRIPTSDNFWRMGDTGPCGPCSEIFFDHG 197 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 +PGG PGS E+G+R++EIWNLVFMQ+ + R LP+ SIDTG+GLER A ++Q Sbjct: 198 PDVPGGPPGSPDEDGDRFVEIWNLVFMQYFEDPPGTRSPLPRPSIDTGLGLERFAAIMQG 257 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D F LIQAS +T +G +HRV+ DHLRS++FLIADG+LP+ +GRGY Sbjct: 258 KRDNYDTDTFVALIQASADLTHQAADGPFKASHRVVADHLRSTAFLIADGVLPSKDGRGY 317 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + ++G TEP LLPAL +MG AYPEL+ + LI ET+R E+ERF Sbjct: 318 VLRRIMRRAMRHLHMMGTTEPTFYKLLPALIQQMGGAYPELVHGEALIRETMRGEEERFK 377 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL LL+ SHL L GDVAF+LYDT G PLD+ QD L G +D+ F Sbjct: 378 AMLDRGLHLLEEEKSHLASGAPLPGDVAFRLYDTFGFPLDLTQDALRGSG-HDVDVKGFE 436 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR RARA G G E IWF ++K+GA++F+GY Sbjct: 437 DAMSVQRQRARAAWTGSGDTAVETIWFEARDKFGASEFLGYS------------------ 478 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V+A++ ++EA G +V V+ +QTPFY E+GGQ GDTG G+ Sbjct: 479 -----TEQADGEVQAVIAGNAFLKEAPVGSEVAVLLNQTPFYGESGGQAGDTGFLTASGV 533 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ ITD QKKA + VH+ V G LR M++ T+D+ R + +HSATHLLH AL Sbjct: 534 KVAITDTQKKAGDLIVHYGTVTEGTLRPGMAVTATVDHDRRSAIRAHHSATHLLHEALRR 593 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS T + LRFDV+ +PIT EL +IE VN+ I +N VVTR M ++A Sbjct: 594 HLGAHVAQKGSLNTAERLRFDVSQPRPITDEELAAIEAEVNNRIRENSQVVTRSMTPDEA 653 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 IA GA AL G KY D VRVVS+ ++ S LCGGTHV+ TG+I IVSES + Sbjct: 654 IAEGATALFGEKYGDEVRVVSMGAGADNKAPWSMELCGGTHVNRTGDIGQFRIVSESGVS 713 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775 AG+RRIEA+ G+ A+ + +++L +A+ +KVS + R+ + EE R++ Q+ H Sbjct: 714 AGVRRIEAVAGKAAQDLTVSNEQRLTQMATMMKVSVADAPERLAAVLEERRQMEKQIAHL 773 Query: 776 KRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +R+L NV KI + + E +ELK + + + K+ + +++L+ + + Sbjct: 774 QRQLATGNVAAAGVDKIGAARLATRNVGETPPRELKGLAETILKQGNADVVVLISTA-DG 832 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 K SV+ V +++++ +AV L R ++ +GG GGGGR MAQ+GGP Sbjct: 833 KGSVVAAVGPEMVEKVDAVALVRTASAAMGGKGGGGRRDMAQAGGP 878 >gi|258541879|ref|YP_003187312.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01] gi|256632957|dbj|BAH98932.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01] gi|256636014|dbj|BAI01983.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-03] gi|256639069|dbj|BAI05031.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-07] gi|256642123|dbj|BAI08078.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-22] gi|256645178|dbj|BAI11126.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-26] gi|256648233|dbj|BAI14174.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-32] gi|256651286|dbj|BAI17220.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654277|dbj|BAI20204.1| alanyl-tRNA synthetase [Acetobacter pasteurianus IFO 3283-12] Length = 881 Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/887 (48%), Positives = 577/887 (65%), Gaps = 31/887 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IRT FLE+F NGH+++PSSSL+P NDPTL+FTN+GMV FKN+FTGQE Y Sbjct: 1 MLTTNEIRTAFLEYFASNGHQIVPSSSLVPKNDPTLLFTNAGMVQFKNVFTGQETRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK AI+ AW+L+TK F+L Sbjct: 61 ATTAQKVVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKPEAIEFAWNLVTKGFNL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TV+ EDE+A LW+ I+GL +IIRI T+DNFW M +TGPCGPCSEIFFD G Sbjct: 121 PKDKLLVTVFAEDEDAAGLWRSIAGLDDSRIIRIPTSDNFWRMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 +PGG PGS E+G+R++EIWNLVFMQ+ + R LP+ SIDTG+GLER A ++Q Sbjct: 181 PDVPGGPPGSPDEDGDRFVEIWNLVFMQYFEDPPGTRSPLPRPSIDTGLGLERFAAIMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D F LIQAS +T +G +HRV+ DHLRS++FLIADG+LP+ +GRGY Sbjct: 241 KRDNYDTDTFVALIQASADLTHQAVDGPFKASHRVVADHLRSTAFLIADGVLPSKDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + ++G TEP LLPAL +MG AYPEL+ + LI ET+R E+ERF Sbjct: 301 VLRRIMRRAMRHLHMMGTTEPTFYKLLPALIQQMGGAYPELVHGEALIRETMRGEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL LL+ SHL L GDVAF+LYDT G PLD+ QD L G +D+ F Sbjct: 361 AMLDRGLHLLEEEKSHLASGASLPGDVAFRLYDTFGFPLDLTQDALRGSG-HDVDVKGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ QR RARA G G E IWF ++K+GA++F+GY Sbjct: 420 EAMAVQRQRARAAWTGSGDTAVETIWFEARDKFGASEFLGYS------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V+A++ E ++EA G +V V+ +QTPFY E+GGQ GDTG G+ Sbjct: 462 -----TEQADGEVQAVIAGNEFLKEAPVGSEVAVLLNQTPFYGESGGQAGDTGFLTASGV 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ +TD QKKA + VH+ V G LR M++ T+D+ R + +HSATHLLH AL Sbjct: 517 KVAVTDTQKKAGDLIVHYGTVTEGTLRPGMAVTATVDHDRRSAIRAHHSATHLLHEALRR 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HV+Q GS T + LRFDV+ +PIT EL +IE VN+ I N VVTR M ++A Sbjct: 577 HLGAHVAQKGSLNTAERLRFDVSQPRPITDEELAAIEAEVNNRIRDNSQVVTRSMTPDEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 IA GA AL G KY D VRVVS+ ++ S LCGGTHV+ TG+I IVSES + Sbjct: 637 IAEGATALFGEKYGDEVRVVSMGAGADNKSPWSMELCGGTHVNRTGDIGQFRIVSESGVS 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775 AG+RRIEA+ G+ A+ + +++L +A+ +KVS + R+ + EE R++ Q+ H Sbjct: 697 AGVRRIEAVAGKAAQDLTVSNEQRLTQMAAMMKVSVADAPERLAAVLEERRQMEKQIAHL 756 Query: 776 KRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +R+L NV KI + + E +ELK + + + K+ + +++L+ + + Sbjct: 757 QRQLATGNVAAAGVDKIGAARLATRNVGETPPRELKGLAETILKQGNADVVVLISTA-DG 815 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 K SV+ V +++++ +AV L R ++ +GG GGGGR MAQ+GGP+ Sbjct: 816 KGSVVAAVGPEMVEKVDAVALVRAASAAMGGKGGGGRRDMAQAGGPD 862 >gi|84517390|ref|ZP_01004743.1| alanyl-tRNA synthetase [Loktanella vestfoldensis SKA53] gi|84508754|gb|EAQ05218.1| alanyl-tRNA synthetase [Loktanella vestfoldensis SKA53] Length = 884 Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/911 (49%), Positives = 584/911 (64%), Gaps = 42/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL +F+K GH ++PSS L+P NDPTLMFTNSGMV FKN+FTG E Y Sbjct: 1 MTSLADIRSTFLNYFEKQGHRVVPSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLT++F + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPFAWELLTRDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF LWKKI G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLLTTVYHTDDEAFDLWKKI-GVPEDRIIRIPTDDNFWRMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMRPLDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D+ + LI+AS T +G +HRVI DHLRS+SFLIA+G+LP+NEGRGY Sbjct: 240 KHDNYDTDVMRALIEASANATSSDPDGPGNTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+ AL +MG+AYPEL Q + LIEETL +E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVSALVQQMGAAYPELGQGQRLIEETLMNEEIRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L +D L G+ AFKLYDT+G PLD+ QD L +G A +D F+ Sbjct: 360 QTLDRGLKLLDDELAGLPEDAALPGEAAFKLYDTYGFPLDLTQDALREKGRA-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+++ARA G G IWF + + G T F+GYD L Sbjct: 419 AAMAAQKAKARAAWSGTGEAADSAIWFDVADLAGPTDFLGYDSLD--------------- 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V +KA+V G +V++A G V++V +QT FYAE+GGQ+GD G D Sbjct: 464 --------VEGQIKALVADGAMVQQA--GGAVQIVLNQTSFYAESGGQVGDAGILQTDTG 513 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 QITD KK G+F+H A V G + L +D R + NHSATHLL+ AL Sbjct: 514 TAQITDT-KKVAGVFIHFATVTNGTIAVGQGAALRVDAGRRAAVQANHSATHLLNEALRE 572 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG H++Q GS PD LRFD +H+KP+++ EL IE +VN +I QN V TRIM +DA Sbjct: 573 TLGDHIAQRGSLNAPDRLRFDFSHTKPVSADELAQIERDVNALIRQNTRVETRIMAPDDA 632 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ +DG +S LCGGTHV GEI + Sbjct: 633 RALGAQALFGEKYGDEVRVVSMGRKDGSGKGAAGNTYSLELCGGTHVRQLGEIGAFVALG 692 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +++ AG+RRIEA+TGQ A +L QD++L +A+ LK +V RV+ + +E R L Sbjct: 693 DAASSAGVRRIEALTGQAALDYLRAQDQRLADVAAALKAPASDVADRVKALMDERRTLAN 752 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ +R+L + VN F + ++S V K+L S++D ++ + SG+++L Sbjct: 753 EVAQLRRELAMGGGAQGASPALQVNGIAFHAQVLSGVTGKDLPSLIDQIKTDLGSGVVLL 812 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + + KA++ + VT DL R +AVD+ R LGG GGGGRP MAQ GG + A+ Sbjct: 813 IADTGD-KAAIAVGVTADLTTRVSAVDILRAVTPELGGKGGGGRPDMAQGGGASTQNAEA 871 Query: 888 AIAGVASFLKK 898 AI S L+K Sbjct: 872 AITQAKSILEK 882 >gi|83951874|ref|ZP_00960606.1| alanyl-tRNA synthetase [Roseovarius nubinhibens ISM] gi|83836880|gb|EAP76177.1| alanyl-tRNA synthetase [Roseovarius nubinhibens ISM] Length = 888 Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/914 (48%), Positives = 590/914 (64%), Gaps = 45/914 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL F+++N H+++ SS L+P NDPTLMFTNSGMV FKN+FTG E Y Sbjct: 1 MPTLNEIRSTFLNFYERNDHQIVESSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AWDLLTK+F L Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIPYAWDLLTKDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L +TVY D+EA ++WKK +GLS D+IIRI T+DNFWSM TGPCGPC+EIF+D G Sbjct: 121 NKDKLLVTVYHTDDEAAEIWKKYAGLSDDRIIRIATDDNFWSMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS EE G+R+IEIWNLVFMQ E+ L SIDTGMGLER+ +LQ Sbjct: 181 PEIWGGPPGSPEEDGDRFIEIWNLVFMQNERFEDGTMRELDMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS VT +G ++HRVI DHLRSS+FLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHVTSQDPDGPGNIHHRVIADHLRSSAFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 V+RRIMRRAM +A LLG +P+M L+PAL T+MG A+PEL +A+ LI+ETL+ E+ RF Sbjct: 301 VVRRIMRRAMRHAHLLGAKDPVMHQLVPALVTQMGQAFPELGRAQSLIQETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L + L G AFKLYDT+G PLD+ QD L +G +D+ F+ Sbjct: 361 QTLDRGLRLLDDELGGLPEGAALPGQTAFKLYDTYGFPLDLTQDALREKGRE-VDVSGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ+++ARA G G IWF + E +G T F+GYD Sbjct: 420 EAMAEQKAKARAAWSGSGEAADATIWFDIAESHGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V G V+ A G V+++ +QTPFYAE+GGQ+GDTG Sbjct: 462 -----TETAEGQIVALVADGAEVKSAGKGDSVQIILNQTPFYAESGGQVGDTGVIRSAEG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD +K A G+F+H V G L + L +D+ R + NHSATHLLH AL Sbjct: 517 AAKITDTRKVA-GVFIHIGEVTEGKLVAGAAAQLEVDHTRRTAIRANHSATHLLHEALRN 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +HSK +++ EL + VN+ I QN V TRIM +DA Sbjct: 576 ALGDHVAQRGSLNAEDRLRFDFSHSKAMSADELDQVAREVNEYIRQNTRVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ + DG +S LCGGTHV TG+I + I+ Sbjct: 636 RDIGAQALFGEKYGDEVRVVSMGSLDGSGKGLDGTTYSIELCGGTHVRQTGDIGMFVILG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +S+ +G+RRIEA+TG AR +L QD ++ SL ++ ++V RV + +E + L Sbjct: 696 DSASSSGVRRIEALTGDAARGYLAAQDARVASLTGEMRCKPEDLVARVRGLLDERKALTN 755 Query: 771 QLIHAKRKL-------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ +R+L +DL +I V + ++S V K+L +++D + ++ SG Sbjct: 756 EVAQLRRELAMAGGSGGAASDDL--REINGVKLHAQVLSGVSGKDLPALIDEHKSRLGSG 813 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++L+ + K +V VT+DL +R +AV++ R +A LGG GGGGR MAQ GG + + Sbjct: 814 AVLLIADTG-GKVAVAAGVTDDLTERLSAVEMVRAAAPALGGKGGGGRADMAQGGGADAS 872 Query: 884 KADQAIAGVASFLK 897 KAD+AIA V + ++ Sbjct: 873 KADEAIAAVETLIE 886 >gi|254474615|ref|ZP_05088001.1| alanyl-tRNA synthetase [Ruegeria sp. R11] gi|214028858|gb|EEB69693.1| alanyl-tRNA synthetase [Ruegeria sp. R11] Length = 883 Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/908 (48%), Positives = 587/908 (64%), Gaps = 39/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN+FTG E Y Sbjct: 1 MPTLNDIRSTFLNYFAKQGHEVVSSSPLVPRNDPTLMFTNSGMVQFKNLFTGLETRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L TVY D+EAF++WKK+ G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSKLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS++E G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGSMKALDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS VT + G+ V+HRVI DHLRS+SFLI+DG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLISDGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL +A+ +IEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQSMIEETLLQEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L + L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDELADLDEGAPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + ++ G T F+GY+ Sbjct: 419 SAMAEQKAKARAAWAGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G V EA +G V+VV +QTPFYAE+GGQ+GD+G DG Sbjct: 461 -----TEAAEGQVMALVVDGAQVSEAGAGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++++D KKA G+F+H VE G++ + L +D+ R + NHSATHLLH AL Sbjct: 516 VVRVSDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHARRSAIRSNHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS D LRFD +H+K ++ E++++E VN I QN V TRIM +DA Sbjct: 575 VLGEHVAQRGSLNADDRLRFDFSHNKALSLDEIRTVEQQVNHFIRQNSTVETRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ + +DG S LCGGTHV TG+I ++ + Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGKAPTGKGQDGQTWSLELCGGTHVKQTGDIGTFVVLGD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A +L GQD L A LK G+V R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAEAFQYLTGQDNLLAQAALELKAQPGDVPERIKALLDERKALQNE 754 Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ K Q+ + + I F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 755 VSQLKQQVAMGGGAGGGVETKDIGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + + A A Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKDFSGAQDA 873 Query: 889 IAGVASFL 896 + +FL Sbjct: 874 LKAAEAFL 881 >gi|259418847|ref|ZP_05742764.1| alanyl-tRNA synthetase [Silicibacter sp. TrichCH4B] gi|259345069|gb|EEW56923.1| alanyl-tRNA synthetase [Silicibacter sp. TrichCH4B] Length = 903 Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/893 (48%), Positives = 578/893 (64%), Gaps = 39/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG ++ Y Sbjct: 20 MPSLNDIRSTFLNYFAKQGHEVVDSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDRRDYVR 79 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+T EFD+ Sbjct: 80 ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITGEFDI 139 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY D+EAF++WKK+ G+ D+IIRI T+DNFW M +TGPCGPC+EIF+D G Sbjct: 140 PKDKLYTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 198 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQ E+ L SIDTGMGLER+A +LQ Sbjct: 199 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNERFADGSMVDLDMQSIDTGMGLERIAALLQG 258 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLFK+LI+AS VT G+ V+HRVI DHLRS SFLIA+G+LP+NEGRGY Sbjct: 259 THDNYETDLFKYLIEASATVTNSDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 318 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG T+P+M L+PAL ++MG+AYPEL Q + LIEET E+ RF Sbjct: 319 VLRRIMRRAMRHASLLGATDPVMHKLVPALVSQMGAAYPELGQGQALIEETFEQEETRFL 378 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD L + ++L G+ AFKLYDT G PLD+ QD L A+G+ +D F+ Sbjct: 379 KTLDRGLKLLDEASVDLNQGDVLPGETAFKLYDTFGFPLDLTQDALRAKGVE-VDTDGFD 437 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+ ++RA +GLG K++F + + G T+F+GY+ Sbjct: 438 AAMKAQKEQSRAGGIGLGDAADVKVYFDIVDAEGTTEFLGYE------------------ 479 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V+ G VE A G V+++ +QTPFY E+GGQ+GDTG +G Sbjct: 480 -----TEKAEGQIVALVKDGAKVETAKKGDSVQIILNQTPFYGESGGQVGDTGVLTVEGG 534 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +I+D KK EG+F+H A V G + + +D+ R Q+ NHSATHLLH AL Sbjct: 535 AARISDT-KKVEGLFLHIAEVTEGEISVGSGAAMEVDHTRRSQIRANHSATHLLHEALRN 593 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS + LRFD +H+K ++ +L I VND I QN PV TRIM +DA Sbjct: 594 ALGEHVAQKGSLNAAERLRFDFSHNKAVSQEDLTKIASEVNDFIRQNSPVSTRIMTPDDA 653 Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY + VRVVS+ + DG +S LCGGTHV TG+I I+ + Sbjct: 654 RALGAQALFGEKYGEEVRVVSMGRADTGKGADGDTYSIELCGGTHVKQTGDIGTFVILGD 713 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A HL + ++ +A LK +V+ R++ + +E + L Sbjct: 714 SASSAGVRRIEALTGAAAFDHLEREAARMAEVAGALKAQSADVMDRLKALMDERKALHNE 773 Query: 774 HAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K Q+ + S +I+ F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 774 ISNLKQQIAMGGGSDGGAETKEISGKTFLGQALQGVSGKDLRGLIDAHKQKIGSGVILLI 833 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + Sbjct: 834 A-EDDGKVAVAAGVTDDLTGDISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 885 >gi|255263093|ref|ZP_05342435.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62] gi|255105428|gb|EET48102.1| alanyl-tRNA synthetase [Thalassiobium sp. R2A62] Length = 884 Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/893 (47%), Positives = 576/893 (64%), Gaps = 40/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IRT FL++++ GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MPSLNDIRTRFLDYYKSEGHEIVSSSPLVPRNDPTLMFANSGMVQFKNLFTGAESRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+++T+E + Sbjct: 61 ATSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKDDAINYAWNMVTRELGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L +TVY +D+EA +WKK++GLS DKIIRI T+DNFW M TGPCGP SEIF+D G Sbjct: 121 NKDKLVVTVYHDDDEAAAIWKKVAGLSDDKIIRIATDDNFWMMGSTGPCGPSSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQ+EQ R LP SIDTGMG+ER+A +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRSPLPNQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 TNDNYATDLIRALIEASANATSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +PLM L+P+L +MG+AYPEL QA+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHVHLLGAQDPLMHRLVPSLVGQMGAAYPELGQAQALIEETLRLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD L L + L G AFKLYDT+G PLD+ QD L +G G+D F+ Sbjct: 361 QTLERGLRLLDDELDGLAEGTDLPGQAAFKLYDTYGFPLDLTQDALREKGR-GVDSDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ+++ARA G G IW + ++ GAT F+GYD Sbjct: 420 EAMAEQKAKARAAWSGSGETVDATIWLDIADRDGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + + AIV+ G ++ A G V++V +QTPFY E+GGQ+GDTG DG+ Sbjct: 462 -----TETAEAQITAIVKHGAEIKSATVGDTVQIVVNQTPFYGESGGQVGDTGVVHADGL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD +K A G+F+H A + +G ++ L +D R Q+ NHSATHLLH AL Sbjct: 517 SARVTDTRKTA-GVFIHIAEITKGTFEVGTAVELNVDPTRRSQIRANHSATHLLHEALRQ 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +H K ++ +L+S+E VN I QN V TRIM +DA Sbjct: 576 SLGDHVAQRGSLNAPDRLRFDFSHGKALSLEQLQSVEAEVNAYIRQNTGVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I ++ Sbjct: 636 RELGAQALFGEKYGDEVRVVSMGAQPNSGRGSLGNTYSLELCGGTHVGRTGDIGAFVMLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +S+ +G+RRIEA++GQ A +L QD +L +AS LK + RV+ + +E + L Sbjct: 696 DSASSSGVRRIEALSGQAAMDYLRTQDGRLAEVASVLKTPAADAPARVKALMDERKALAN 755 Query: 771 QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 ++ +R+L ++ + + + F++ ++S V K+L +++D + +I SG ++ Sbjct: 756 EVAQLRRELAVSGGGQTDAPAAEDVNGTKFLAQVVSGVTGKDLPALVDDYKAQIGSGAVL 815 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 L+ KA+V VT D + +AVDL R + LGG GGGGRP MAQ GG Sbjct: 816 LI-ADAGGKAAVAAGVTADKAEAVSAVDLVRAAVAELGGKGGGGRPDMAQGGG 867 >gi|163736400|ref|ZP_02143819.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis BS107] gi|161390270|gb|EDQ14620.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis BS107] Length = 883 Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/893 (49%), Positives = 577/893 (64%), Gaps = 39/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN FTG E Y+ Sbjct: 1 MPTLNDIRSTFLNYFAKQGHEIVSSSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AWDL+TKEF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWDLITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF++WKK+ G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS++E G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGTMKALDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS VT + G+ V+HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL +A+ +IEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQPMIEETLHQEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD LS L + L G AFKLYDT G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDELSGLDEGAPLPGAAAFKLYDTFGFPLDLTQDALREKGRT-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + ++ G T F+GY+ Sbjct: 419 SAMAEQKAKARAAWSGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V G V EA G V+VV +QTPFYAE+GGQ+GD+G DG Sbjct: 461 -----TEAAEGQIMALVVDGAQVAEAGVGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++TD KKA G+F+H VE G++ + L +D+ R + NHSATHLLH AL Sbjct: 516 VVRVTDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHLRRSAIRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K ++ EL+ + +VN I QN V TRIM +DA Sbjct: 575 ALGDHVAQRGSLNADDRLRFDFSHNKALSGEELRRVAVDVNRFIRQNTVVETRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ + +DG +S LCGGTHV TG+I I+S+ Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGEAATGKGQDGNTYSIELCGGTHVRQTGDIGTFVILSD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A +HL + ++ +A+ LK V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAEAFAHLDREALRMAEVANSLKAQPEEVMDRLKALMDERKALQNE 754 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ K Q+ + ++ F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 755 VSQLKQQVAMGGGAGGASETKEVGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866 >gi|254460942|ref|ZP_05074358.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2083] gi|206677531|gb|EDZ42018.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium HTCC2083] Length = 887 Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/896 (48%), Positives = 579/896 (64%), Gaps = 41/896 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL +F+K GH ++PSS L+P NDPTL+F NSGMV FKN+FTG E Y Sbjct: 1 MASLNDIRSTFLNYFEKQGHAIVPSSPLVPRNDPTLLFANSGMVQFKNLFTGLESRDYAR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLT EF++ Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGNYFKAEAIAYAWELLTVEFNI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY D+EA +WKK++GLS D+IIRI T+DNFW M TGPCGPC+EIFFD G Sbjct: 121 PKERLLVTVYHTDDEAADIWKKVAGLSDDRIIRIATDDNFWRMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEQFEDGTMKPLEMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T + +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 KHDNYDTDLMRSLIEASADATSVDPDGPTKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL +MG+A+PEL QA+ LIEETLR E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKDPLMHRLVPALVRQMGAAFPELGQAQALIEETLRLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL LLD L L + ++ +GD AFKLYDT G PLD+ QD L +G D+ FN Sbjct: 361 KTLERGLKLLDDELVGLPEGQVFSGDAAFKLYDTFGFPLDLTQDALREKGREA-DVDGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+E Q+++ARA G G IWF + + +GAT F+GYD Sbjct: 420 QAMEAQKAKARAAWSGTGEAADSAIWFDIVDAHGATDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + +V G + A +GQ+V+++ +Q+PFYAE+GGQ+GD G + Sbjct: 462 -----TETAEGQIATLVMDGAEADAAKAGQEVQIILNQSPFYAESGGQVGDKGIIKTETG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++D KK++G+ +H A V+ G + + +L +D+ R + NHSATHLLH AL Sbjct: 517 TAVVSDT-KKSQGVIIHTATVQDGEIIKGSAAILEVDHGRRTAIRANHSATHLLHEALRA 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +HS ++S +L +E +VN I QN PV TRIM +DA Sbjct: 576 ALGDHVAQRGSLNAEDRLRFDFSHSAALSSEDLIKVEKDVNTYIRQNAPVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + +G +S LCGGTHV TG+I ++ Sbjct: 636 RALGAQALFGEKYGDEVRVVSMGTQAGSGKGSNGQTYSLELCGGTHVRQTGDIGAFVLLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +S+ AG+RRIEA+TG+ A H+ QD +L +AS LK +V RV+ + EE + L Sbjct: 696 DSASSAGVRRIEALTGEAALDHMRAQDLRLAKVASDLKAQAADVPARVKALLEERKALSN 755 Query: 771 QLIHAKRKLQLNVEDLSCHK-----IADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 ++ +R+L ++ + +NF++ +++ V K+L +++D + I SG + Sbjct: 756 EVAQLRRELAMSGGAGQGGGAEAEVVNGINFVAQVLTGVSGKDLPALIDEHKAAIGSGAV 815 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +L+ KA+V VT+D + +AVDL + + LGG GGGGR MAQ GG + Sbjct: 816 LLI-ADAGGKAAVAAGVTDDTVATVSAVDLVKAAVVELGGKGGGGRADMAQGGGKD 870 >gi|89054478|ref|YP_509929.1| alanyl-tRNA synthetase [Jannaschia sp. CCS1] gi|122498736|sp|Q28QV8|SYA_JANSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|88864027|gb|ABD54904.1| alanyl-tRNA synthetase [Jannaschia sp. CCS1] Length = 884 Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/893 (49%), Positives = 583/893 (65%), Gaps = 39/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL++F + GH ++PSS L+P NDPTLMF NSGMV FKN+FTG EK Y Sbjct: 1 MTSLNDIRSTFLDYFGRQGHAVVPSSPLVPRNDPTLMFVNSGMVQFKNLFTGVEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+TK+F L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRYAWELITKDFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+TVY D+EAF++WKK+ G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKARLYVTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PGS+EE G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 EHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFADGTMVPLDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD D + L++AS + +G+ V+HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 SHDNYDTDTMRALMEASAHASSTDLDGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL ++MG AY EL QA+ LI ETL+ E+ERF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMYRLVPALVSQMGQAYSELGQAQALITETLKLEEERFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD ++ L +D L G AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDEVAKLPEDGNLPGAAAFKLYDTYGFPLDLTQDALREQGRT-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + EK G T+F+GYD Sbjct: 419 AAMAEQKAKARAAWSGSGDAADATIWFDIAEKNGVTEFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G V++ S Q V V +QTPFYAE+GGQ+GD+G + Sbjct: 461 -----TEVAEGQVLALVVDGARVDKVASNQDVIFVTNQTPFYAESGGQVGDSGTIRTETG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 L +T+ +K A G+F+H V G ++ L++D++ RR + NHSATHLL+ AL Sbjct: 516 VLHVTETRKVA-GVFLHVGQVTEGTIKVGQGASLSVDHERRRYICANHSATHLLNEALRW 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +G V Q GS + D LRFD +H+KP+T+ EL +E VND+I +N V TR+M +DA Sbjct: 575 AIGDSVVQRGSLNSRDRLRFDFSHNKPMTADELAQVEAEVNDLITRNTAVETRVMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712 A GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I I+S Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGHHAGSGKGLDKDTYSIELCGGTHVKRTGDIGPFVILS 694 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES+ AG+RRIEA+T Q A +L Q+E++ LA+ L +V+ RV+ + ++ +KL Sbjct: 695 ESASAAGVRRIEALTNQTASFYLSEQNERMGQLAAELNTQAADVLDRVKALKDDRKKLEN 754 Query: 771 QLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ +R+L + + VNF + +S V K+L ++D + ++ SG ++L+ Sbjct: 755 EVAQLRRELAMAGGTSAPEAASVNGVNFHAQALSGVTGKDLAGIVDEHKARLGSGAVLLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 KA+V VTEDL DR +AVDL R + LGG GGGGRP AQ GG + Sbjct: 815 -ADAGGKAAVAAGVTEDLTDRLSAVDLVRAAVAELGGKGGGGRPDFAQGGGKD 866 >gi|83944501|ref|ZP_00956954.1| alanyl-tRNA synthetase [Sulfitobacter sp. EE-36] gi|83844703|gb|EAP82587.1| alanyl-tRNA synthetase [Sulfitobacter sp. EE-36] Length = 886 Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/895 (48%), Positives = 566/895 (63%), Gaps = 40/895 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F+K GH + PSS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MKTLNDIRSTFLGYFEKQGHSIQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI +W+L+TKE + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKELGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLY+TVY D+EA ++WKK++GL D+IIRI T+DNFW M TGPCGPCSEIF+D G Sbjct: 121 DPNRLYVTVYHTDDEAAEIWKKVAGLPDDRIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQ+EQ R LP SIDTGMG+ER+A +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRTALPNQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL ++LI+AS + +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 TNDNYATDLMRNLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +MG AYPEL QA+ LI ETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGLKDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L L G+ AFKLYDT+G P+D+ QD L + +D+ FN Sbjct: 361 QTLDRGLKLLDDELKGLPAGADLPGEAAFKLYDTYGFPVDLTQDALREQDRK-VDLEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+++ARA G G IWF + EK G T F+GYD Sbjct: 420 AAMDAQKAKARAAWSGSGEAADATIWFDVAEKSGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A++Q G V E G V++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TETAEGQIVALIQDGAQVAEVKQGDAVQIALNQTPFYAESGGQVGDTGTIKTDSG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +TD +K A G+F+H V G ++T + VL +D+ R + NHSATHLL+ AL Sbjct: 517 VVTVTDTRKTA-GVFIHIGEVTEGTVKTSQAAVLDVDHARRTSIRANHSATHLLNEALRK 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS D LRFD +H+ P+T+ +L ++E+ VN I QN V TRIM +DA Sbjct: 576 TLGDHVMQRGSLNAADRLRFDYSHNHPMTADQLAAVEEEVNSYIRQNTAVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ E G +S LCGGTHV TG+I ++ Sbjct: 636 REMGAQALFGEKYGDEVRVVSMGREAGSGKGADKQTYSLELCGGTHVRQTGDIGAFVLLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +SS +GIRRIEA+TG A L Q+ L +A+ LK S +V RV + +E R L Sbjct: 696 DSSSSSGIRRIEALTGTEALKWLRTQETALTRVAAELKTSTADVPDRVRALLDERRALAN 755 Query: 771 QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 ++ +R+L + + + ++ + F++ +++ V K+L +++D + K+ SG ++ Sbjct: 756 EVAQLRRELAMSGGGDASAAAPREVNGIKFIAQVVNGVTGKDLPALIDEHKAKLGSGAVL 815 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L+ + KA+V VT DL +AVD+ + LGG GGGGRP MAQ G + Sbjct: 816 LIA-DADGKAAVAAGVTADLAATISAVDIVKTVVAELGGKGGGGRPEMAQGGAKD 869 >gi|126737803|ref|ZP_01753533.1| alanyl-tRNA synthetase [Roseobacter sp. SK209-2-6] gi|126721196|gb|EBA17900.1| alanyl-tRNA synthetase [Roseobacter sp. SK209-2-6] Length = 883 Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/893 (48%), Positives = 576/893 (64%), Gaps = 39/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ ++ IR+TFL +F K GHE++ SS L+P NDPTLMFTNSGMV FKN FTG E Y+ Sbjct: 1 MATLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFTNSGMVQFKNCFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+TKE + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKNEAIPFAWELITKELVV 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TVY D+EAF++W+KI G+ D+IIRI T+DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PKERLYTTVYHTDDEAFEIWRKI-GVPEDRIIRIATSDNFWQMGDTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWNLVFMQ E+ L SIDTGMGLER+A +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNLVFMQNEKFADGSMIDLEMQSIDTGMGLERIAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLFK LI+AS VT G+ V+HRVI DHLRS SFLIA+G+LP+NEGRGY Sbjct: 240 THDNYETDLFKSLIEASADVTSTDPFGDQNVHHRVIADHLRSCSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL Q + LIEET E+ RF Sbjct: 300 VLRRIMRRAMRHASLLGAKDPVMHKLVPALVQKMGAAYPELGQGQALIEETFEQEETRFL 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLDRGL LLD + + K + L+G+ AFKLYDT+G PLD+ QD L A+ + +D F+ Sbjct: 360 KTLDRGLKLLDDASADMDKGDTLSGETAFKLYDTYGFPLDLTQDALRAKEIE-VDTQGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++EQ+ ++RA +GLG K++F + + G T+F+GY+ Sbjct: 419 AAMKEQKEKSRAGGIGLGEAADVKVYFDILDASGPTEFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + AIV+ G VE A G+ V+++ +QTPFY E+GGQ+GD+G +G Sbjct: 461 -----TEKAEGQIAAIVKDGAKVESAGRGETVQIILNQTPFYGESGGQVGDSGVLTVEGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++D KK EG+F+H A V G + + + +D++ R Q+ NHSATHLLH AL Sbjct: 516 TAVVSDT-KKVEGLFLHIAEVTEGQIAVGLGAAMEVDHKRRSQIRANHSATHLLHEALRN 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++ EL + VND I QN V TRIM +DA Sbjct: 575 ALGEHVAQKGSLNADDRLRFDFSHNKAMSAGELVKVGAEVNDFIRQNTEVTTRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 GA AL G KY + VRVVS+ + DG +S LCGGTHV TG+I I+ + Sbjct: 635 RDLGAQALFGEKYGEEVRVVSMGKAETGKGHDGQTYSIELCGGTHVKQTGDIGTFVILGD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A ++L + ++ +A LK V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAAAYAYLEREASRMAEIAGALKAQPAEVMDRLKAMMDERKALQNE 754 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K Q+ + +I F++ + V K+L+ ++DA ++ I SG+I+L+ Sbjct: 755 ISNLKQQVAMGGGAAGGSEAKEIGGKKFLAQALQGVSGKDLRGLIDAHKQNIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K +V VTEDL +AVD+ + + +GG GGGGRP MAQ GG + Sbjct: 815 A-EDDGKVAVAAGVTEDLTSDISAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866 >gi|163741065|ref|ZP_02148457.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10] gi|161385418|gb|EDQ09795.1| alanyl-tRNA synthetase [Phaeobacter gallaeciensis 2.10] Length = 883 Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/893 (48%), Positives = 578/893 (64%), Gaps = 39/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN FTG E Y+ Sbjct: 1 MPTLNDIRSTFLNYFAKQGHEIVSSSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIPFAWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF++WKK+ G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIDTSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS++E G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSADEDGDRFIEIWNVVFMQNEQFEDGTMKALDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS VT + G+ V+HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKALIEASADVTNVDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL +A+ +IEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGRAQPMIEETLHQEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L + L G AFKLYDT G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDELAGLDEGAPLPGAAAFKLYDTFGFPLDLTQDALREKGRT-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + ++ G T F+GY+ Sbjct: 419 SAMAEQKAKARAAWSGSGESADSTIWFDVADQAGTTDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A++ G V EA G V+VV +QTPFYAE+GGQ+GD+G DG Sbjct: 461 -----TEAAEGQIMALLVDGAQVAEAGVGTDVQVVLNQTPFYAESGGQVGDSGEIRVDGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++TD KKA G+F+H VE G++ + L +D+ R + NHSATHLLH AL Sbjct: 516 VVRVTDT-KKAAGVFIHFGKVESGMITKGAAAQLEVDHLRRSAIRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +++ EL+ + +VN I QN V TRIM +DA Sbjct: 575 ALGDHVAQRGSLNADDRLRFDFSHNKALSAEELRRVAVDVNRFIRQNTVVETRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ + +DG +S LCGGTHV TG+I I+S+ Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGEAATGKGQDGNTYSIELCGGTHVRQTGDIGTFVILSD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A +HL + ++ +A+ LK V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAEAFAHLDREALRMAEIANSLKAQPEEVMDRLKALMDERKALQNE 754 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ K Q+ + ++ F+ + V K+L+ ++DA ++KI SG+I+L+ Sbjct: 755 VSQLKQQVAMGGGAGGASETKEVGGKTFLGQALEGVSGKDLRGLIDAHKQKIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K +V VT+DL +AVD+ + + +GG GGGGRP MAQ GG + Sbjct: 815 A-NDGGKVAVAAGVTDDLTAEVSAVDVLKAAVPAVGGKGGGGRPDMAQGGGKD 866 >gi|83955444|ref|ZP_00964075.1| alanyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1] gi|83840088|gb|EAP79263.1| alanyl-tRNA synthetase [Sulfitobacter sp. NAS-14.1] Length = 886 Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/895 (47%), Positives = 565/895 (63%), Gaps = 40/895 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F+K GH + PSS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MKTLNDIRSTFLGYFEKQGHSIQPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI +W+L+TKE + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFSWELITKELGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLY+TVY D+EA ++WKK++GL D+IIRI T+DNFW M TGPCGPCSEIF+D G Sbjct: 121 DPNRLYVTVYHTDDEAAEIWKKVAGLPDDRIIRIATDDNFWMMGPTGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQ+EQ R LP SIDTGMG+ER+A +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRTALPNQSIDTGMGIERVAALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL ++LI+AS + +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 TNDNYATDLMRNLIEASAHASSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+P L +MG AYPEL QA+ LI ETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGLKDPLMHRLVPELVRQMGGAYPELGQAQSLITETLLLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L L G+ AFKLYDT+G P+D+ QD L + +D+ FN Sbjct: 361 QTLDRGLKLLDDELKGLPAGADLPGEAAFKLYDTYGFPVDLTQDALREQDRK-VDLEGFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+++ARA G G +WF + EK G T F+GYD Sbjct: 420 AAMDAQKAKARAAWSGSGEAADATVWFDVAEKSGTTDFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A++Q G V E G V++ +QTPFYAE+GGQ+GDTG D Sbjct: 462 -----TETAEGQIVALIQDGAQVAEVKQGDAVQIALNQTPFYAESGGQVGDTGTIKTDSG 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +TD +K A G+F+H V G ++T + VL +D+ R + NHSATHLL+ AL Sbjct: 517 VVTVTDTRKTA-GVFIHIGEVTEGTVKTSQAAVLDVDHARRTSIRANHSATHLLNEALRK 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS D LRFD +H+ +T+ +L ++E+ VN I QN V TRIM +DA Sbjct: 576 TLGDHVMQRGSLNAADRLRFDYSHNHAMTTDQLAAVEEEVNSYIRQNTAVETRIMTPDDA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ E G +S LCGGTHV TG+I ++ Sbjct: 636 REMGAQALFGEKYGDEVRVVSMGREAGSGKGADKQTYSLELCGGTHVRQTGDIGAFVLLG 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +SS +GIRRIEA+TG A L Q+ L +A+ LK S +V RV + +E R L Sbjct: 696 DSSSSSGIRRIEALTGTEALKWLRTQETALTRVAAELKTSTADVPDRVRALLDERRALAN 755 Query: 771 QLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 ++ +R+L ++ + ++ + F++ +++ V K+L +++D + K+ SG ++ Sbjct: 756 EVAQLRRELAMSGGGDAGAAAPREVNGIKFIAQVVNGVTGKDLPALIDEHKAKLGSGAVL 815 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L+ + KA+V VT DL +AVD+ + LGG GGGGRP MAQ G + Sbjct: 816 LIA-DADGKAAVAAGVTADLAATISAVDIVKTVVAELGGKGGGGRPEMAQGGAKD 869 >gi|260427849|ref|ZP_05781828.1| alanyl-tRNA synthetase [Citreicella sp. SE45] gi|260422341|gb|EEX15592.1| alanyl-tRNA synthetase [Citreicella sp. SE45] Length = 906 Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/895 (48%), Positives = 571/895 (63%), Gaps = 43/895 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F+K GHE++PSS L+P NDPTLMF NSGMV FKN+FTG E Y+ Sbjct: 18 MQSLNDIRSTFLGYFEKQGHEVVPSSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYKR 77 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK AI AW+L+T+E D+ Sbjct: 78 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKSEAIPFAWELVTRELDI 137 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +RL +TVY D+EA ++WKK +G+ D+IIRI T+DNFW M TGPCGPC+EIFFD G Sbjct: 138 DPKRLLVTVYHTDDEAAEIWKK-TGVPEDRIIRIATSDNFWMMGPTGPCGPCTEIFFDHG 196 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS EE G+R++EIWNLVFMQ+EQ R L SIDTGMG+ER+A +LQ Sbjct: 197 DKYWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGSRRELAAQSIDTGMGIERVAALLQG 256 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS VT +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 257 TNDNYSTDLIRSLIEASADVTSTDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 316 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL +MG+AYPEL++A+ LIEETL+ E+ RF Sbjct: 317 VLRRIMRRAMRHAHMLGSKDPVMYRLVPALVRQMGAAYPELVRAQPLIEETLKLEETRFK 376 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L L L G AFKLYDT+G PLD+ QD L R +D F+ Sbjct: 377 QTLDRGLKLLDEELVSLPAGASLPGATAFKLYDTYGFPLDLTQDALRERERT-VDTDGFD 435 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF + +++GAT F+GYD Sbjct: 436 AAMSEQKAKARAAWSGTGEAADLAIWFEIADQHGATDFLGYD------------------ 477 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGD 537 T + +V+ G VE +G+ VV +QTPFY E+GGQ+GDTG + D Sbjct: 478 -----TETAEGQMLTLVRDGVEVEALEAGETGWVVLNQTPFYGESGGQVGDTGFLRRLED 532 Query: 538 GIRL-QITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ++TD QK G I H V +G ++ L +D++ R + NHSATHLLH Sbjct: 533 EHDMAEVTDTQKMGGGKITAHQVTVRQGRFVKGDAVALEVDHKRRGMIRANHSATHLLHE 592 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV+Q GS PD LRFD +H+K +T+ E+ +E VN I QN PV TRIM Sbjct: 593 ALRRALGPHVAQRGSLNAPDRLRFDFSHAKALTAEEIAQVETEVNAFIRQNAPVTTRIMT 652 Query: 656 REDAIASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLL 708 +DA A GA AL G KY D VRVVS+ + DG +S LCGGTHV TG+I Sbjct: 653 PDDARAIGAQALFGEKYGDEVRVVSMGELAGSGKGGDGKTYSLELCGGTHVRQTGDIGTF 712 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 + SES+ AG+RRIEA+TG+ A + L G+D L + LK + V RV + +E R Sbjct: 713 ALTSESASAAGVRRIEALTGEAAMAELRGRDHALSRIEGLLKAHGPDAVARVAALLDERR 772 Query: 769 KL--QLIHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L ++ +R L + E + V F++ ++S V K+L ++D + ++ SG Sbjct: 773 RLDNEVAQLRRDLAMAGGPGEGPELRDVGGVPFVAQVLSGVQGKDLPPLIDEHKARLGSG 832 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 ++L+ + K +V VTEDL +AVDL + + + LGG GGGGRP +AQ G Sbjct: 833 AVLLIADTG-GKVAVAAGVTEDLTGNVSAVDLVKAAVEALGGKGGGGRPDLAQGG 886 >gi|254455521|ref|ZP_05068950.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211] gi|207082523|gb|EDZ59949.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. HTCC7211] Length = 888 Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/913 (46%), Positives = 615/913 (67%), Gaps = 48/913 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++ IR TFL++F+KN H ++ SS+L+P NDPTLMF NSGMV FKN+FTG EK YQ T Sbjct: 5 SLNEIRNTFLKYFEKNDHRIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYQRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AWDL+T++F +D+ Sbjct: 65 TSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEQAIHYAWDLITRDFGIDK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY+TVY ED+EAF WKKI+G + D+IIRI T+DNFWSM ETGPCGPCSEIF+D G+ Sbjct: 125 NRLYVTVYHEDDEAFNFWKKIAGFNDDRIIRIATSDNFWSMGETGPCGPCSEIFYDHGDH 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + GGLPG+ E+G+R+IEIWNLVFMQFEQ +K++R LPK S+DTGMGLER+A +LQ Sbjct: 185 LAGGLPGTKDEDGDRFIEIWNLVFMQFEQISKEKRIDLPKPSVDTGMGLERIAALLQGTH 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+ D FK +I ++ ++ +K + +N+ + RVI DHLR+SSFLIA+G+LP+NEGRGYVL Sbjct: 245 DNYETDHFKKIINSASEILKVKSDNSNLSSFRVIADHLRASSFLIAEGVLPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRR M ++ LLG EP+ +L L EM YPEL++A+ LI+ETL+ E+E+F Sbjct: 305 RRIMRRGMRHSHLLGSNEPVFFNLFETLRDEMKGNYPELVRAESLIKETLKMEEEKFLVL 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 LDRG+ +L+ +S + D++L G+VAFKLYDT+G PLD+ +DIL + ++ ID F Sbjct: 365 LDRGIKILNEEISKI--DKVLPGEVAFKLYDTYGFPLDLTEDILRNKSMS-IDSEKFQSL 421 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++E R A+ + G G E +WF +K+K GAT+F+GY+ Sbjct: 422 MKESRELAKKNWKGSGDAAVEDVWFGIKDKLGATEFLGYE-------------------- 461 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 TN V ++++ + V+E +G + ++ +QTPFY E+GGQ+GDTG G+ + Sbjct: 462 ---TNQAEGAVLSLLKDNKEVDELKNGDEGMIIVNQTPFYGESGGQVGDTGEIAGNDFKF 518 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++TDVQKK +FVH+ V G ++ + ++ L I+ + R HSATHLLH +L +L Sbjct: 519 EVTDVQKKLGDLFVHYGKVINGSIQLKDNVELKINVERRDDTRAYHSATHLLHESLRRVL 578 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV+Q GS + P LRFD +H KPI + E+ IE VN+++++ V TR+M ++A+ Sbjct: 579 GKHVTQKGSLVEPSRLRFDFSHMKPIQTEEIDKIEGFVNNMVSKKSDVKTRLMTPDEAVE 638 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 +GA AL G KY + VRV+S+ +DG S+ LCGGTHV +TG+I IVS+SSI AG+R Sbjct: 639 NGALALFGEKYGEEVRVLSMGDDDGSYFSTELCGGTHVRNTGDIGKFKIVSQSSIAAGVR 698 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQ--GNVVGRVEEIW------EEYRKLQLI 773 RIEA+ ++ +L + EKL +++S K Q N+ ++ E+ E +++ + Sbjct: 699 RIEALRDKQLEDYLNNK-EKLSNISS-EKNDQIINNLSEQITELGGKPSLDESDQRILIK 756 Query: 774 HAKRKLQ---LN--VEDLSCHKIAD--VNFMSHIISEVD---SKELKSVMDALQKKIQSG 823 + ++L+ +N +ED + + I D +N + VD KEL+ ++D +K++ G Sbjct: 757 NLTKQLETISVNSILEDKTKNIIKDEQINGIKIRFQNVDGLPPKELRKLVDKGKKELSEG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I+++ +K+ K + + VT+ L ++F+AV + ++++GG GGGGR AQ+GG + + Sbjct: 817 IVIVFA-AKDDKVGIAVGVTDTLTNKFDAVKFVKTGSEIIGGQGGGGRKDFAQAGGQDKS 875 Query: 884 KADQAIAGVASFL 896 K D+A + + + Sbjct: 876 KIDEAFEKLKTLI 888 >gi|163794125|ref|ZP_02188098.1| Alanine--tRNA ligase [alpha proteobacterium BAL199] gi|159180739|gb|EDP65258.1| Alanine--tRNA ligase [alpha proteobacterium BAL199] Length = 889 Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/900 (48%), Positives = 583/900 (64%), Gaps = 36/900 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ + IR FL++F +GH + SS L+P NDPTLMFT +GMV FKN+FTG EK Y Sbjct: 1 MATTNDIRRVFLDYFAAHGHTAVESSPLVPRNDPTLMFTTAGMVQFKNVFTGAEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+L+T++F L Sbjct: 61 AATAQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIEYAWNLITRDFAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL +TVY EDE+A LW+KI+GL D+IIRI T+DNFW+M +TGPCGPCSEIFFD G Sbjct: 121 PKDRLLVTVYSEDEDAAALWRKIAGLPDDRIIRIATSDNFWAMGDTGPCGPCSEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E+G+R++EIWNLVFMQFEQ K ER LP+ SIDTGMGLER+A VLQ Sbjct: 181 PHIAGGPPGSPDEDGDRFMEIWNLVFMQFEQITKDERRSLPRPSIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD D + LI+AS + + +G V+HRV+ DHLR+S+FLIADG+LP+NEGRGY Sbjct: 241 KHDNYDTDTMRALIEASAHASNTEPDGPFKVSHRVVADHLRASAFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A ++G TEPLM LLP L +MG AYPEL +A+ LI TL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHIMGCTEPLMHRLLPTLVRDMGGAYPELGRAQALITGTLQLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL RGL L+ LG + L G+VAFKLYDT+G PLD+ DIL +G +D F+ Sbjct: 361 DTLGRGLKHLEEATGKLGDSQALPGEVAFKLYDTYGFPLDLTADILRGQGRT-VDQAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ QR+ AR G G T+ +WF ++EK GAT+F+GYD Sbjct: 420 TAMDAQRAAARKAWTGSGEAATDAVWFEVREKTGATEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--AIGD 537 T V A++ G+ V++A G +V VV +QTPFY E+GGQ+GDTG AI Sbjct: 462 -----TTAAEGQVTALLVDGKPVQKAELGVEVLVVVNQTPFYGESGGQVGDTGTIRAIDG 516 Query: 538 GIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 G + + D Q+K +FVH ++ G L ++ LT++ + R + NHSATHL+H A Sbjct: 517 GTAVVAVVDTQRKLGDVFVHRGMLSGGALSVGDAVQLTVETERRDRTRANHSATHLMHEA 576 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LG HV+Q GS + P+ +RFD +H I +L +E VN + N V TR+M Sbjct: 577 LRQRLGEHVAQKGSMVAPERMRFDFSHPASIAREDLAWVEAEVNRRVRGNSEVTTRLMTP 636 Query: 657 EDAIASGAAALLGTKYNDRVRVVSV----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + AI GA AL G KY D VRVVS+ + + S LCGG HV TG+I L IV Sbjct: 637 QAAIDEGAMALFGEKYGDEVRVVSMGGSADKANRAAWSVELCGGIHVRRTGDIGLFKIVG 696 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES++ AG+RRIEA+TG A + ++ L A+ LK + ++ RV + EE R+L+ Sbjct: 697 ESAVAAGVRRIEAVTGSGALDWIGAREAALGEAAAELKTTPEDLPARVHALVEERRRLER 756 Query: 773 IHAKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + + +L K+A + + + + V ++ELK + DAL+K+I SG++ +V Sbjct: 757 ELVETRKKLAAGGGAAGEVKKVAGLTYAARALEGVPARELKGLADALKKEIGSGVVAVVS 816 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E KAS+++ VT DL R +AVDL R+ ++ LGG GGGGRP MAQ+GGP+ ++A A+ Sbjct: 817 -GDEGKASLVVGVTADLTGRISAVDLVRVGSEALGGKGGGGRPDMAQAGGPDASQAQAAL 875 >gi|84686864|ref|ZP_01014748.1| alanyl-tRNA synthetase [Maritimibacter alkaliphilus HTCC2654] gi|84665061|gb|EAQ11541.1| alanyl-tRNA synthetase [Rhodobacterales bacterium HTCC2654] Length = 882 Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/891 (48%), Positives = 577/891 (64%), Gaps = 40/891 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL +F+KNGH ++ SS L+P NDPTLMFTNSGMV FKN+FTG E Y Sbjct: 1 MASLNDIRSTFLSYFEKNGHTVVDSSPLVPRNDPTLMFTNSGMVQFKNLFTGVEHRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+L+T+EF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIPFAWELITREFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY D+EAF++WKK+ G+ ++IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 PKDKLYTTVYHTDDEAFEIWKKV-GVPEERIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEQFEDGSMRELDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS TG+ G++ V+HRVI DHLRS+SFL+ADG++P+NEGRGY Sbjct: 240 SHDNYDTDLFKALIEASAHATGVDPYGDHNVHHRVIADHLRSTSFLMADGVMPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+P L +MG AYPEL QA+ +IEETL +E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPELVRQMGQAYPELGQAQSMIEETLLTEETRFQ 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLDRGL LLD L+ L + L G+ AFKLYDT G PLD+ QD L + +D F+ Sbjct: 360 ATLDRGLKLLDEELAKLPEGAALPGEAAFKLYDTFGFPLDLTQDALREKDRL-VDTEGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G +W+ + E+ G T+F+GYD Sbjct: 419 AAMAEQKAKARAAWSGSGEAADATVWYDIAEEKGTTEFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+V G+ ++ +G V++V +QTPFYAEAGGQ+GDTG + Sbjct: 461 -----TEKAEGQIVALVADGDKTDKVDTG-SVQIVVNQTPFYAEAGGQVGDTGTITTETG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++TD KK G+F+H A V G + LT+++ R + NHSATHLLH AL Sbjct: 515 KARVTDT-KKVAGVFIHFAEVVEGSIERGQGAELTVEHDRRSAIRANHSATHLLHEALRE 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS PD LRFD +H+K +T+ E+ +E +VN + QN PV TRIM +DA Sbjct: 574 ALGDHVAQRGSLNAPDRLRFDFSHNKALTADEIGRVERDVNAYVRQNTPVETRIMAPDDA 633 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG------VHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ G +S LCGGTHV TG+I + +E Sbjct: 634 RALGAQALFGEKYGDEVRVVSMGRAATGKGVDKETYSIELCGGTHVKRTGDIGAFVLTAE 693 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S+ AG+RRIEA+TG+ A L ++ + + LKVS+ +V+ R++ + +E + L Q Sbjct: 694 SASSAGVRRIEALTGEAAMGELRRREMLMSEVEGLLKVSEQDVLTRLQALLDERKTLAGQ 753 Query: 772 LIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + +R+L ++ ++ V F + ++ V ++L ++D + ++ SG ++L+ Sbjct: 754 VDQLRRELAMSGGAGAGPDAEQVNGVAFFAQSLTGVSGRDLPPLIDEHKARLGSGAVLLI 813 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + KA+V VT DL D +AVDL R + LGG GGGGRP MAQ GG Sbjct: 814 A-DVDGKAAVAAGVTPDLTDTVSAVDLVRAAVAELGGKGGGGRPDMAQGGG 863 >gi|119713374|gb|ABL97437.1| alanine-tRNA ligase [uncultured marine bacterium EB80_69G07] Length = 888 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/913 (45%), Positives = 598/913 (65%), Gaps = 48/913 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++ IR+TFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKN+FTG EK YQ T Sbjct: 5 SLNEIRSTFLKYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYQRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKER I+LAW+L+TK+F LD+ Sbjct: 65 TSQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKERGIELAWNLITKDFGLDK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY+TV+ ED+EAF WKKI+G S D+IIRI+T+DNFWSM ETGPCGPCSEIF+D G+ Sbjct: 125 NRLYVTVFHEDDEAFNFWKKIAGFSDDRIIRISTSDNFWSMGETGPCGPCSEIFYDHGDH 184 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + GGLPG+ ++G+R+IEIWNLVFMQ+EQ +K +R LPK S+DTGMGLER+A +LQ Sbjct: 185 LKGGLPGTKDQDGDRFIEIWNLVFMQYEQVSKDKRIDLPKPSVDTGMGLERIAALLQGTH 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY D FK LI + VT +K NNI + RVI DHLR+SSFL+A+G+LP+NEGRGYVL Sbjct: 245 DNYQTDHFKKLISSISDVTKVKQADNNISSFRVIADHLRASSFLLAEGVLPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRR M ++ LLG EP+ + +L EM YPEL ++K LI+ETL+ E+E+F Sbjct: 305 RRIMRRGMRHSHLLGSKEPIFYKIFESLKNEMSGNYPELERSKSLIKETLKMEEEKFLVL 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 LDRG+ +L+ +S + D++L+GDVAFKLYDT+G PLD+ +DIL + L +D F++ Sbjct: 365 LDRGIKILNDEISKI--DKVLSGDVAFKLYDTYGFPLDLTEDILKNKSLK-VDHQKFDEL 421 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +++ + A+ + G G + E IWF +K+K G T+F+GY+ Sbjct: 422 MKKSKELAKKNWKGSGDSSEEAIWFLIKDKTGPTEFLGYE-------------------- 461 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 +N +V +++ + + +G++ ++ +QTPFY E+GGQLGD G + Sbjct: 462 ---SNQSEGVVLNLIKNNQESKSLATGEEGMIITNQTPFYGESGGQLGDKGTIVSGNSVF 518 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++ D QKK +FVH+ V+ G ++ + + ID + R L HSATHLLH +L L Sbjct: 519 EVEDTQKKLGDLFVHYGSVKTGEIKINDVVEMKIDVERRNNLKAYHSATHLLHESLRRTL 578 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV Q GS + PD LRFD +H KPIT+ EL++I+ VN+ + V TRIM + AI Sbjct: 579 GKHVMQKGSLVAPDRLRFDFSHMKPITNEELETIDKLVNEYVKNGSEVTTRIMTPKAAIE 638 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA A G KY + VRVVS+ E S+ LCGGTHV +TG+I +S+SSI AG+R Sbjct: 639 KGALAFFGEKYGEEVRVVSMGKEKDAYFSTELCGGTHVKNTGDIGKFKTISQSSIAAGVR 698 Query: 722 RIEAITGQRARSHLMGQ-----------DEKLKSLASFL-------KVSQGNVVGRVEEI 763 R+EA+ ++ + + +E +K L+S + KV ++ ++ + Sbjct: 699 RVEALRDKQLEDFIKNKEKLSTLSVQKDEETIKDLSSQIIKLGGKPKVDNKDLKEIIKNL 758 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ +L + + N+ ++ KI D+ + ++ K+L+ ++D+ +K++ G Sbjct: 759 SKQLEQLNVNSVLQDKTKNI--INDQKIKDIKVRFQKVQDLPPKDLRKLVDSGKKELGDG 816 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I+++ S E K + + +TE L+D+++AV A+L ++++GG GGGGR AQ+GG + + Sbjct: 817 IVIVFA-SSEDKVGLGVGITEKLVDKYDAVKFAKLGSEIIGGKGGGGRKDFAQAGGQDKD 875 Query: 884 KADQAIAGVASFL 896 K D+A + + + Sbjct: 876 KIDEAFEKLKALI 888 >gi|86138306|ref|ZP_01056880.1| alanyl-tRNA synthetase [Roseobacter sp. MED193] gi|85824831|gb|EAQ45032.1| alanyl-tRNA synthetase [Roseobacter sp. MED193] Length = 883 Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/893 (49%), Positives = 576/893 (64%), Gaps = 39/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E YQ Sbjct: 1 MATLNDIRSTFLNYFAKQGHEIVDSSPLVPRNDPTLMFVNSGMVQFKNLFTGVETRDYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF +WKK+ G+ D+IIRI T DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKNRLLTTVYHTDDEAFAIWKKL-GVPEDRIIRIDTADNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWN+VFMQ E+ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNVVFMQNEKFEDGSMTPLDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS VT G+ V+HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKSLIEASADVTSSDPYGDQNVHHRVIADHLRSTSFLMADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+PAL +MG+AYPEL QA+ +IEETL+ E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVPALVQQMGAAYPELGQAQSMIEETLKLEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD +S L + L G AFKLYDT G PLD+ QD L +G +D F+ Sbjct: 360 QTLERGLKLLDDEVSGLDEGAPLPGSAAFKLYDTFGFPLDLTQDALREKGRE-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G +WF + +K+GAT F+GY+ Sbjct: 419 SAMAEQKAKARAAWAGSGEAADSTVWFDIADKHGATDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V+ G V EA G KV++V +QTPFYAE+GGQ+GD+G DG Sbjct: 461 -----TEIAEGQVVALVKDGGEVSEAGLGDKVQLVLNQTPFYAESGGQVGDSGEIRVDGG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +Q++D +K A G+F+H V G++ L +D R + NHSATHLLH AL Sbjct: 516 LVQVSDTKKSA-GVFIHIGQVVEGLVTAGAPAQLVVDPTRRSAIRANHSATHLLHEALLE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K ++ AEL + +VN I QN PV TRIM +DA Sbjct: 575 ALGEHVAQRGSLNADDRLRFDFSHTKALSDAELCQVSADVNAFIRQNTPVETRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYED------GGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ D G +S LCGGTHV TG+I I+ + Sbjct: 635 RALGAQALFGEKYGDEVRVVSMGKADTGKGQSGDTYSIELCGGTHVRQTGDIGTFVILGD 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG A HL ++ +A LK G+V+ R++ + +E + LQ Sbjct: 695 SASSAGVRRIEALTGAAAFEHLQRTAGQMAEIAGTLKAQPGDVMDRLKSMMDERKALQNE 754 Query: 774 HAKRKLQLNV-----EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K QL + + +I F++ + V K+L++++DA ++ I SG+I+L+ Sbjct: 755 ISTLKQQLAMGGGAGGGVEAKEIGGKKFLAQALEGVSGKDLRALIDAHKQSIGSGVILLI 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K +V VT+DL+ +AVD+ R + +GG GGGGRP MAQ GG + Sbjct: 815 A-EEGGKVAVAAGVTDDLIGDVSAVDVLRAAVPAVGGKGGGGRPDMAQGGGKD 866 >gi|110679927|ref|YP_682934.1| alanyl-tRNA synthetase [Roseobacter denitrificans OCh 114] gi|123065511|sp|Q165U5|SYA_ROSDO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|109456043|gb|ABG32248.1| alanyl-tRNA synthetase [Roseobacter denitrificans OCh 114] Length = 885 Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/893 (48%), Positives = 574/893 (64%), Gaps = 43/893 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F+K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E Y+ Sbjct: 1 MQTLNDIRSTFLSYFEKQGHSVVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRAYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AWDL+T+E + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWDLVTRELGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+T+Y DEEA +WKK+ G+ D+II I TNDNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLYVTIYHTDEEAAAIWKKV-GVPEDRIIPIATNDNFWMMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQ+EQ R L SIDTGMG+ER+A +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTRRDLAAQSIDTGMGIERVAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS + +G +HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 240 TNDNYATDLMRSLIEASADASNTDPDGPCKTHHRVIADHLRSTSFLMADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL +MG+AYPEL QA+ +I +TL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMHQLVPALVQQMGAAYPELGQAQSMIIQTLLQEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD LS LG+ + L G AFKLYDT+G PLD+ QD L +G G+D F+ Sbjct: 360 QTLERGLKLLDDELSALGEGDDLPGAAAFKLYDTYGFPLDLTQDALREKGR-GVDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+++ARA G G IWF + + G T F+GYD Sbjct: 419 AAMAAQKAKARAAWSGTGEAADAAIWFDVADAQGTTDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDG 538 T + A+VQ G + A +G+ V++ +QTPFYAE+GGQ+GDTG +G Sbjct: 461 -----TEVAEGQIVALVQGGTATQTAKAGETVQIALNQTPFYAESGGQVGDTGVIKTANG 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +TD +K A+ +FVH A V G L + LT+D R + NHSATHLLH AL Sbjct: 516 V-ANVTDCRKTAD-VFVHMAKVTEGALSVGEAAQLTVDPARRTAIRANHSATHLLHEALR 573 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG HV+Q GS D LRFD +H++ ++ EL +E +VN I QN PV TRIM + Sbjct: 574 EALGDHVAQRGSLNAEDRLRFDFSHTQALSHEELARVEADVNAYIRQNAPVETRIMTPDA 633 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIV 711 A GA AL G KY D VRVVS+ ++G +S LCGGTHV TG+I + Sbjct: 634 ARELGAQALFGEKYGDEVRVVSMGRKEGSGKGLSGDTYSLELCGGTHVRQTGDIGAFVTL 693 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 +S+ AG+RRIEA+TG A HL QD++L ++A+ LK +V RV + EE R L Sbjct: 694 GDSASSAGVRRIEALTGAAALQHLRAQDQRLAAVAADLKAQLADVPERVRSLLEERRALS 753 Query: 771 -QLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 ++ +R+L ++ S +A FM+ ++S V K+L ++D +++++ SG++ Sbjct: 754 NEVAQLRRELAMSGGGGSAAPDVKDVAGTPFMAQVLSGVTGKDLPGLVDQMKEQMGSGVV 813 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +L+ + KA+V VT+DL + +AVD+ + S LGG GGGGRP MAQ G Sbjct: 814 LLIA-DADGKAAVAAGVTKDLTAKLSAVDIVKASVAALGGKGGGGRPDMAQGG 865 >gi|294677289|ref|YP_003577904.1| alanyl-tRNA synthetase [Rhodobacter capsulatus SB 1003] gi|294476109|gb|ADE85497.1| alanyl-tRNA synthetase [Rhodobacter capsulatus SB 1003] Length = 884 Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/892 (49%), Positives = 575/892 (64%), Gaps = 41/892 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL FF+KNGH ++ SS L+P NDPTLMFTNSGMV FKN FTG EK Y Sbjct: 1 MPSLNDIRSTFLAFFEKNGHRVVESSPLVPRNDPTLMFTNSGMVQFKNCFTGVEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTK+FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEKAITYAWELLTKDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA +WKK+SGL+ ++IIRI T DNFW M TGPCGPC+EIFFD G Sbjct: 121 PKSKLLVTVYHTDDEAAAIWKKVSGLTDERIIRIPTKDNFWQMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 181 DHIWGGPPGSKDEDGDRFIEIWNNVFMQNEQFEDGSMVELEMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G V+HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 241 KHDNYDTDLMRSLIEASAHATSADPDGAGKVHHRVIADHLRSTSFLIADGVMPSNDGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA +A +LG +P+M L+PAL +MG+AYPEL++A+ LIEETL+ E+ RF Sbjct: 301 VLRRILRRAARHAHMLGAKDPVMHKLVPALVRQMGAAYPELVRAQALIEETLKLEETRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL+RGL LLD L+ L + L G AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 361 VTLERGLKLLDDELAALPEGAELPGPAAFKLYDTYGFPLDLTQDALREKGRT-VDTAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+EEQ+++ARA G G T K+WF + E+ G T+F+GYD Sbjct: 420 AAMEEQKAKARASWSGSGEATDAKLWFEIAERAGVTEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T ++A+V +G V EA V++V +QTPFYAE+GGQ+GD G D Sbjct: 462 -----TETAEGQIQALVIEGAEVTEATGA--VQIVVNQTPFYAESGGQVGDHGIIRTDSA 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ITD KK G+F+H V G + L +D+ R + NHSATHLLH AL Sbjct: 515 EIRITDT-KKVAGVFIHIGEVVEGKVTRGQPAKLEVDHARRSAIRANHSATHLLHEALRR 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H K +T+ EL ++E VN I QN PV TRIM +DA Sbjct: 574 ALGDHVAQKGSLNAEDRLRFDFSHGKAMTAEELMTVEAEVNAFIRQNTPVETRIMTPDDA 633 Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ + DG +S LCGGTHV TG+I + Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGELLGSGKGHDGRTYSLELCGGTHVKRTGDIGAFVALG 693 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES+ AG+RR EA+TGQ A L Q+ +L +A LK S V RV+ + EE + L Sbjct: 694 ESASSAGVRRFEALTGQAALDWLKAQNARLAEVAGLLKTSPAEVADRVKALAEERKALAN 753 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ +R+L + ++ ++ F++ ++S V K+L +++D L+ K+ SG +++ Sbjct: 754 EVAQLRRELAMGGGAAGGQEVIEIKGLRFIAQVVSGVSGKDLPALVDGLKDKVGSGAVLV 813 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 V + KA+ VT D +AV++ +++A LGG GGGGRP MAQ+GG Sbjct: 814 VADTG-GKAACAAGVTADKTGTVSAVEIVKIAAAALGGKGGGGRPDMAQAGG 864 >gi|254450715|ref|ZP_05064152.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 238] gi|198265121|gb|EDY89391.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 238] Length = 884 Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/892 (48%), Positives = 570/892 (63%), Gaps = 40/892 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+++S IR+TFL+++ + GH ++ SS L+P NDPTLMFTNSGMV FKN FTG E YQ Sbjct: 1 MTSLSDIRSTFLDYYARQGHAVVASSPLVPRNDPTLMFTNSGMVQFKNRFTGVESGDYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+F + Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWNLLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EA+ LWKKI G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSKLLVTVYHTDDEAYDLWKKI-GVPEDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN+VFMQ EQ + L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPDEDGDRFIEIWNVVFMQNEQFDDGTLKPLDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DLF+ LI+AS T G+ V+HRVI DHLRS+SFLIA+G+LP+NEGRGY Sbjct: 240 GHDNYETDLFRALIEASAHATSTDPFGDQNVHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL +MG+AYPEL + LIE+TL +E+ RF Sbjct: 300 VLRRIMRRAMRHAHILGSKDPVMHRLVPALVQQMGAAYPELGLGQTLIEDTLLNEEVRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLDRGL LLD L + + L+GD AFKLYDT G PLD+ QD L +G G+D F Sbjct: 360 TTLDRGLKLLDDALVDVPEGSDLSGDTAFKLYDTFGFPLDLTQDALREQG-RGVDTDGFK 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+++ARA G G+ IWF + +K G+T+F+GY+ Sbjct: 419 AAMDAQKAKARAAWTGTGASADAAIWFDIADKQGSTEFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + AIV + V+ A G V ++F+QTPFY E+GGQ+GD G D Sbjct: 461 -----TETAQGQLLAIVSDTDPVDSASKGDCVALIFNQTPFYGESGGQVGDEGTVKTDTG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +ITD KK G+F+H A V G + L +D R + NHSATHLL+ AL Sbjct: 516 TARITDT-KKVVGLFLHMAEVTSGTITKGQGSELVVDPARRAAIRANHSATHLLNEALRV 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS D LRFD TH+ +TSAEL +E +VN + QN V TRIM +DA Sbjct: 575 ALGDHVVQRGSLNAADRLRFDFTHTGAMTSAELTQVEQDVNRYVQQNTAVSTRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA AL G KY D VRVVS+ + +G +S LCGGTHV+ TG+I + + SE Sbjct: 635 RAIGAQALFGEKYGDEVRVVSMGRAKTGKGAEGLTYSLELCGGTHVARTGDIGMFALTSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + G+RRIEA+TGQ A ++L +DE L + LK +V RV+ + +E + L + Sbjct: 695 RASSDGVRRIEALTGQTAMTYLRTRDETLGDVEGMLKAKGADVASRVKALMDERKALANE 754 Query: 772 LIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + +R++ + E I + F + ++ + K+L +++D ++ + SG I+L Sbjct: 755 VAQLRREVAMGGGAKDEGPQAKTINGIAFKAQVMQGITGKDLPAMIDEMKSVMGSGAILL 814 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + + KA+V VT DL+D+ +AVDL R + LGG GGGGRP MAQ GG Sbjct: 815 IA-DGDGKAAVAAGVTADLVDKVSAVDLVRAAVAELGGKGGGGRPDMAQGGG 865 >gi|114767542|ref|ZP_01446296.1| alanyl-tRNA synthetase [Pelagibaca bermudensis HTCC2601] gi|114540395|gb|EAU43481.1| alanyl-tRNA synthetase [Roseovarius sp. HTCC2601] Length = 891 Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/903 (47%), Positives = 573/903 (63%), Gaps = 45/903 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F+K GH+++PSS L+P NDPTLMFTNSGMV FKN+FTG E Y+ Sbjct: 1 MPSLNDIRSTFLGYFEKQGHQVVPSSPLVPRNDPTLMFTNSGMVQFKNLFTGVETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEM+GNFSFG YFK+ AI AW+L+T+E D+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMMGNFSFGDYFKKEAIPFAWELVTRELDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +T+Y D+EA ++WKK +G+ D+IIRI T DNFW M TGPCGPC+EIFFD G Sbjct: 121 PAERLLVTIYHTDDEAAEIWKK-TGVPDDRIIRIDTTDNFWMMGPTGPCGPCTEIFFDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS EE G+R++EIWNLVFMQ EQ L SIDTGMG+ER+A +LQ Sbjct: 180 DKYWGGPPGSPEEDGDRFVEIWNLVFMQNEQFEDGSMRALDMQSIDTGMGIERVAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 TNDNYSTDLIRALIEASADATSSDPDGPGKTHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A +LG +P+M L+PAL +MG AYPEL++A+ LIEETL+ E+ RF Sbjct: 300 VLRRIMRRAMRHAHMLGAKDPVMHRLVPALVRQMGQAYPELVRAQPLIEETLKLEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L LG+ L G AFKLYDT+G PLD+ QD L RG +D F+ Sbjct: 360 QTLDRGLKLLDDELVGLGEGAKLPGQAAFKLYDTYGFPLDLTQDALRERGRE-VDTGGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQ+++ARA G G IWF + + GAT F+GYD Sbjct: 419 EAMAEQKAKARAAWSGSGEAADLAIWFEIADANGATDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA--IGD 537 T + A+V+ G VE +G+ VV +QTPFY E+GGQ+GD+G + D Sbjct: 461 -----TETAEGQMLALVKDGAEVEALEAGESGWVVMNQTPFYGESGGQVGDSGWMRRLED 515 Query: 538 GIRL-QITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 L ++TD QK G +F H +++G ++ L +D+ R ++ NHSATHLLH Sbjct: 516 EHDLAEVTDTQKMGGGKVFAHQVTIKQGRFAKGEAVALEVDHARRGKIRANHSATHLLHE 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL LG HV+Q GS P+ LRFD +H+K +T E+ +E VN I QN V TRIM Sbjct: 576 ALRRALGDHVAQRGSLNAPERLRFDFSHAKALTPEEISRVEREVNAFIRQNSAVNTRIMT 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGVHSSALCGGTHVSSTGEIMLL 708 +DA A GA AL G KY D VRVVS+ E DG +S LCGGTHV+ TG+I Sbjct: 636 PDDARALGAQALFGEKYGDEVRVVSMGTEAGSGKGGDGQTYSIELCGGTHVAQTGDIGTF 695 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 + SE++ AG+RRIEA+TG+ A + L G+D+ L + LK V RV + +E R Sbjct: 696 ALTSETASAAGVRRIEALTGEAAMAELRGRDKALGEIEGLLKAHGAEAVSRVGALLDERR 755 Query: 769 KL--QLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 KL ++ +R L ++ V+F++ ++S V K+L ++D + ++ Sbjct: 756 KLENEVAQLRRDLAMAGGAGQGGGAEAREVGGVSFVAQVLSGVSGKDLPPLIDEHKARLG 815 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 SG ++L+ + K +V VTEDL +AVDL + + + LGG GGGGRP MAQ G + Sbjct: 816 SGAVLLIADTG-GKVAVAAGVTEDLTGSHSAVDLVKAAVEALGGKGGGGRPDMAQGGAKD 874 Query: 882 GNK 884 ++ Sbjct: 875 ASE 877 >gi|126735784|ref|ZP_01751529.1| alanyl-tRNA synthetase [Roseobacter sp. CCS2] gi|126714971|gb|EBA11837.1| alanyl-tRNA synthetase [Roseobacter sp. CCS2] Length = 885 Score = 800 bits (2066), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/894 (48%), Positives = 574/894 (64%), Gaps = 45/894 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++++ IR+TFL +F K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E Y Sbjct: 1 MTSLADIRSTFLNYFGKQGHAIVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+F + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAFAWELLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL +TVY D+EA +WKK++GL D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKDRLLVTVYHTDDEAADIWKKVAGLPDDRIIRIPTDDNFWRMGPTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWN+VFMQ EQ + L SIDTGMGLER+ +LQ Sbjct: 181 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEQFDDGSLKPLEMQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIA+G+LP+NEGRGY Sbjct: 241 KHDNYDTDLMRALIEASADATSSDPDGPGNTHHRVIADHLRSTSFLIAEGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG +P+M L+PAL +MG+AYPEL Q + LIEETL +E+ RF Sbjct: 301 VLRRIMRRAMRHAHQLGGKDPVMHRLVPALVQQMGAAYPELGQGQRLIEETLLNEEVRFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L +L D L G AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 361 QTLDRGLKLLDEELQNLPDDAALPGTAAFKLYDTYGFPLDLTQDALREKGRE-VDTDGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G IWF++ ++ GAT F+GYD L Sbjct: 420 AAMAEQKAKARAAWSGTGEAADSAIWFNITDESGATDFLGYDTLT--------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + A+V G+ + A V++V +QTPFYAEAGGQ+GD G + Sbjct: 465 --------AEGQIMALVVDGDRADHADGA--VQIVLNQTPFYAEAGGQVGDAGTLRTETG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + +ITD +K E I VH A V G L L +D R + NHSATHLL+ AL Sbjct: 515 KAEITDTKKFGE-IHVHFAKVTEGHLHKGQGAELAVDPVRRANIQANHSATHLLNEALRA 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS PD LRFD +H+K + AEL I+ +VN II QN PV TRIM +DA Sbjct: 574 VLGDHIAQRGSLNGPDRLRFDFSHTKALNDAELAQIDRDVNAIIRQNSPVETRIMTPDDA 633 Query: 660 IASGAAALLGTKYNDRVRVVSVEYED-------GGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ ++ G +S LCGGTHV GEI + Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGRQEGSGKGMGGNTYSLELCGGTHVKQLGEIGAFVTLG 693 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 +S+ AG+RRIEA+TGQ A HL +++ L + A+ LK +V R++ E ++ + Sbjct: 694 DSASSAGVRRIEALTGQAALDHLRDREKILFAAAAELKTPIDRLVSRIK--GESFKLKEA 751 Query: 773 IHA----KRKLQL--NVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 ++ +R+L + +D + ++ + V F + ++S V K+L +++D ++ ++SG + Sbjct: 752 LNENAQLRRELAMGGGAKDAAPSEVINGVAFQAQVLSGVTGKDLPALIDEMKAAMESGAV 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +L+ + KA+V + VT DL+DR +AVD+ R + LGG GGGGR MAQ GG Sbjct: 812 LLIADAG-GKAAVAVGVTADLIDRVSAVDILRAATPELGGKGGGGRADMAQGGG 864 >gi|254436958|ref|ZP_05050452.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 307] gi|198252404|gb|EDY76718.1| alanyl-tRNA synthetase [Octadecabacter antarcticus 307] Length = 884 Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/897 (47%), Positives = 570/897 (63%), Gaps = 40/897 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+++S IR+TFL+++ +NGH+++ SS L+P NDPTLMFTN GMV FKN FTG E YQ Sbjct: 1 MTSLSDIRSTFLDYYARNGHKVVASSPLVPRNDPTLMFTNCGMVQFKNRFTGVESGNYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK+F + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWNLLTKDFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L +TVY D+EA+ LWKKI G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSKLLVTVYHTDDEAYDLWKKI-GVPEDRIIRIATDDNFWRMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS E+G+R+IEIWN+VFMQ EQ + +L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPDEDGDRFIEIWNIVFMQNEQFDDGTMKLLEMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+ DL + LI+AS T +G+ V+HRVI DHLRS+SFLIA+G+LP+NEGRGY Sbjct: 240 HHDNYNTDLMRALIEASANATDGAPDGDGNVHHRVIADHLRSTSFLIAEGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+ AL +MG+AYPEL Q + LIE+TL +E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAQDPVMHRLVSALIQQMGAAYPELGQGQTLIEDTLLNEEIRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TLDRGL LLD L + + L+G AFKLYDT G PLD+ QD L +G G+D F Sbjct: 360 TTLDRGLKLLDDALVDVPEGSDLSGATAFKLYDTFGFPLDLTQDALREKG-RGVDTDGFK 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++ Q+++ARA G G+ IWF + + +G T+F+GY+ Sbjct: 419 AAMDAQKAKARAAWTGTGASADAAIWFDIVDAHGVTEFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + AIV + V A +G V ++F+QTPFY E+GGQ GD G D Sbjct: 461 -----TETAQGQLLAIVSDTDPVNSANTGDCVALIFNQTPFYGESGGQEGDQGTVKTDTG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD KK G+F+H A V G + T L +D+ R + NHSATHLL+ AL Sbjct: 516 TARVTDT-KKVAGLFLHMAEVTAGAITTGQGSELVVDHAQRSAIRANHSATHLLNEALRV 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS D LRFD TH+ +T+ EL +E +VN + QN V TRIM +DA Sbjct: 575 ALGDHVVQRGSLNAADRLRFDFTHTSCMTAVELAQVEHDVNHYVQQNTTVSTRIMTPDDA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG------VHSSALCGGTHVSSTGEIMLLYIVSE 713 A GA A G KY D VRVVS+ + G +S LCGGTHV+ TG+I + + SE Sbjct: 635 RALGAQAQFGEKYGDEVRVVSMGRANTGKGVDRQTYSLELCGGTHVARTGDIGMFALTSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + G+RRIEA+TGQ AR +L +DE L + LK +V RV+ + +E R L + Sbjct: 695 RASSDGVRRIEALTGQTARRYLRTRDETLADVEGMLKSKGTDVATRVKALMDERRALANE 754 Query: 772 LIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + +R++ + E I V F + ++ V K+L +++D ++ + SG ++L Sbjct: 755 VAQLRREVAMGGGAKDEGTQDKDINGVAFKAQVMQGVTGKDLPAMIDDMKSAMGSGAVLL 814 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + KA+V VT DL+D+ +AVDL R + LGG GGGGRP MAQ GG + + Sbjct: 815 IA-EGDGKAAVAAGVTADLVDKISAVDLVRAAVAKLGGKGGGGRPDMAQGGGKDASN 870 >gi|260574639|ref|ZP_05842642.1| alanyl-tRNA synthetase [Rhodobacter sp. SW2] gi|259023056|gb|EEW26349.1| alanyl-tRNA synthetase [Rhodobacter sp. SW2] Length = 882 Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/891 (48%), Positives = 572/891 (64%), Gaps = 40/891 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFLEFFQ+NGH ++ SS L+P NDPTLMF NSGMV FKN FTG E Y Sbjct: 1 MPSLNDIRSTFLEFFQRNGHRVVESSPLVPRNDPTLMFANSGMVQFKNCFTGVETRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLT++FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSDAIPYAWELLTRDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L +TVY D+EA +WK+++GL +IIRI T+DNFW M TGPCGPC+EIFFD G Sbjct: 121 PKDKLLVTVYHTDDEAANIWKRVAGLPDSRIIRIPTDDNFWRMGPTGPCGPCTEIFFDHG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+ ++G+R+IEIWNLVFMQ EQ LPK SIDTGMGLER+ +LQ Sbjct: 181 DKIWGGPPGSADQDGDRFIEIWNLVFMQNEQFADGRLVPLPKQSIDTGMGLERIGALLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 K +NYD DL + LI+AS T +G +HRVI DHLRS+SFLIADG++P+NEGRGY Sbjct: 241 KHDNYDTDLMRALIEASAHATSTDPDGEGKTHHRVIADHLRSTSFLIADGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LG +PLM L+PAL +MG AYPEL +A+ LIEETL+ E+ RF Sbjct: 301 VLRRIMRRAMRHAHQLGAQDPLMHRLVPALVRQMGGAYPELTRAQALIEETLQLEETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL LS + + L G+ AFKLYDT+G PLD+ QD L +G + +D F+ Sbjct: 361 QTLERGLHLLADELSRIPEGAALPGEAAFKLYDTYGFPLDLTQDALREQGRS-VDTAGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G KIWF + E +G ++F+GYD Sbjct: 420 AAMAEQKAKARASWAGSGETGDAKIWFQIAEDFGPSEFLGYD------------------ 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+V G V+ A G +V++V +QTPFYAE+GGQ+GD G + Sbjct: 462 -----TETAEGQVLALVADGAAVQTA--GARVQIVVNQTPFYAESGGQVGDAGWIRTETG 514 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 Q+TD KKA G+ +H A V G + L +D+ R + NHSATHLL+ AL Sbjct: 515 VAQVTDT-KKAAGVVIHVAEVTEGQISQGQPAKLEVDHSRRAAIRANHSATHLLNEALRR 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H+K +T +EL +E VN +I QN PV TR+M +DA Sbjct: 574 ALGDHVAQRGSLNAADRLRFDFSHAKGMTPSELAQVEAEVNAVIRQNSPVETRLMTPDDA 633 Query: 660 IASGAAALLGTKYNDRVRVVSV-------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ + DG +S LCGGTHV+ GEI I+S Sbjct: 634 RGLGAQALFGEKYGDEVRVVSMGALAGSGKGSDGQTYSLELCGGTHVARLGEIGSFLILS 693 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 ES+ +GIRRIEAITG+ + L++ A+ L ++ R++ + E + LQ Sbjct: 694 ESASASGIRRIEAITGEGVLRDVRANYAHLEAAAAALGAVPADLAPRIKALMAERKALQN 753 Query: 772 -LIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + +R++ + E I V F++ ++S V K+L ++D ++ ++ SG ++L+ Sbjct: 754 EVAQLRREVAMGGRAEGPEAKDINGVKFIAQVLSGVSGKDLPGLIDEMKARLGSGAVLLI 813 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + K A V VT DL+ R +AV L + +A+ +GG GGGGRP MAQ+GG Sbjct: 814 ADTGGKPA-VAAGVTGDLVARLSAVALVKAAAEAMGGKGGGGRPDMAQAGG 863 >gi|163731786|ref|ZP_02139233.1| alanyl-tRNA synthetase [Roseobacter litoralis Och 149] gi|161395240|gb|EDQ19562.1| alanyl-tRNA synthetase [Roseobacter litoralis Och 149] Length = 885 Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/911 (47%), Positives = 581/911 (63%), Gaps = 41/911 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F+K GH ++ SS L+P NDPTLMF NSGMV FKN+FTG E Y+ Sbjct: 1 MQTLNDIRSTFLSYFEKQGHSVVASSPLVPRNDPTLMFANSGMVQFKNLFTGVETRAYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+T++ + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWNLVTRDLGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY+TVY DEEA +WKK+ G+ D+II I TNDNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLYVTVYHTDEEAAAIWKKV-GVPEDRIIPIATNDNFWMMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R++EIWNLVFMQ+EQ R L SIDTGMG+ER+A +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFVEIWNLVFMQYEQFEDGTRRDLTAQSIDTGMGIERVAALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY DL + LI+AS + +G +HRVI DHLRS+SFL+ADG++P+N+GRGY Sbjct: 240 TNDNYATDLMRSLIEASADASNTDPDGPCKTHHRVIADHLRSTSFLMADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +PLM L+PAL +MG+AYPEL QA+ +I +TL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPLMHQLVPALVQQMGAAYPELGQAQSMITQTLLQEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LLD L+ L + L G AFKLYDT+G PLD+ QD L +G G+D F+ Sbjct: 360 QTLERGLKLLDDELNALPDGDDLPGAAAFKLYDTYGFPLDLTQDALREKGR-GVDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q+++ARA G G +WF + + G T F+GYD Sbjct: 419 AAMAAQKAKARAAWSGTGEAADATVWFDVADAEGTTDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T + A+VQ G + A +G+ V++ +QTPFYAE+GGQ+GD+G Sbjct: 461 -----TEVAEGQIVALVQDGAATDTATTGETVQIALNQTPFYAESGGQVGDSGVIKTAKG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +TD +K A+ +FVH A V G++ + L +D R + NHSATHLLH AL Sbjct: 516 TATVTDCRKTAD-VFVHTAKVTEGVISVGEAAQLAVDPARRTAIRANHSATHLLHEALRE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS D LRFD +H++ ++S EL +E +VN I QN PV TRIM + A Sbjct: 575 ALGDHVAQRGSLNAEDRLRFDFSHTQALSSEELARVEADVNTYIRQNAPVETRIMTPDAA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGG-------VHSSALCGGTHVSSTGEIMLLYIVS 712 GA AL G KY D VRVVS+ ++G +S LCGGTHV TG+I + Sbjct: 635 RELGAQALFGEKYGDEVRVVSMGRKEGSAKGLNGDTYSLELCGGTHVRQTGDIGAFVALG 694 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 +S+ AG+RRIEA+TG A +HL QD++L +AS LK +V RV + +E R L Sbjct: 695 DSASSAGVRRIEALTGAAALAHLRAQDQRLAEVASDLKAQAADVPERVRSLLDERRALSN 754 Query: 771 QLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 ++ +R+L ++ S +A ++ ++S V K+L ++D +++++ SG+++ Sbjct: 755 EVAQLRRELAMSGGSGSAAPDVKDVAGTPLLAQVLSGVTGKDLPGLVDQMKEQMGSGVVL 814 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L+ + KA+V VT+DL ++ +AVDL + + LGG GGGGRP MAQ G + + AD Sbjct: 815 LIA-DADGKAAVAAGVTKDLTEKVSAVDLVKAAVSALGGKGGGGRPDMAQGGAKDASNAD 873 Query: 887 QAIAGVASFLK 897 AIA V + LK Sbjct: 874 AAIAAVETVLK 884 >gi|254510259|ref|ZP_05122326.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11] gi|221533970|gb|EEE36958.1| alanyl-tRNA synthetase [Rhodobacteraceae bacterium KLH11] Length = 890 Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/909 (48%), Positives = 575/909 (63%), Gaps = 48/909 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E YQ Sbjct: 1 MPTLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFVNSGMVQFKNLFTGVETRDYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+TKEF + Sbjct: 61 ATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKPEAIPFAWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF++WKK+ G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKSRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+EE G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFEDGAMVELDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS T + G+ V+HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKTLIEASADATNVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+P L MG+ Y EL QA+ LIEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPIMYQLVPTLVQLMGAQYSELGQAQPLIEETLLLEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L + L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDELAGLPAGDPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G + +WF + + GAT F+GYD Sbjct: 419 AAMAEQKAKARAAWAGSGESADQVVWFDVLDTAGATDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-----CA 534 T + A+V G +V+ G +V +QTPFY EAGGQ+GDTG A Sbjct: 461 -----TEKAEGQIAALVVDGVLVDSIEQGGSGWIVVNQTPFYGEAGGQVGDTGEIRRLDA 515 Query: 535 IGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D R++ D +K AEG ++ H V+ G + ++ L +D+ R + NHSATHLL Sbjct: 516 RDDVARVE--DTRKFAEGKVYAHKVTVDHGAISKGDAVELEVDHARRTAIRANHSATHLL 573 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL LG HV+Q GS D LRFD +HSK +T E+K +E VN I QN V TRI Sbjct: 574 HEALRETLGDHVAQRGSLNASDRLRFDFSHSKALTLDEMKKVEREVNAFIRQNSTVETRI 633 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIML 707 M +DA GA AL G KY D VRVVS+ + +DG S LCGGTHV TG+I Sbjct: 634 MTPDDARELGAQALFGEKYGDEVRVVSMGKATTGKGQDGETWSIELCGGTHVRQTGDIGT 693 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 ++ +S+ AG+RRIEA+TG A +L QD +L ++A LK +VV RV+ + +E Sbjct: 694 FVVLGDSASSAGVRRIEALTGDEAFKYLSAQDHRLGTIALELKAQPDDVVTRVKSLLDER 753 Query: 768 RKLQ--LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + LQ + +R L + + V FM+ ++ V K+L +++D + ++ Sbjct: 754 KALQNEVAQLRRDLAMAGGAGQGGGSEARDVNGVAFMAQSLTGVSGKDLPALIDEHKSRL 813 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 SG+++L+ + KA+V VT DL D+ +AVDL R + LGG GGGGRP MAQ GG Sbjct: 814 GSGVVLLIADTG-GKAAVAAGVTADLTDQLSAVDLVRAAVAELGGKGGGGRPDMAQGGGK 872 Query: 881 NGNKADQAI 889 + + AD AI Sbjct: 873 DASNADAAI 881 >gi|304321543|ref|YP_003855186.1| AlaS, alanyl-tRNA synthetase [Parvularcula bermudensis HTCC2503] gi|303300445|gb|ADM10044.1| AlaS, alanyl-tRNA synthetase [Parvularcula bermudensis HTCC2503] Length = 884 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/870 (48%), Positives = 571/870 (65%), Gaps = 32/870 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 +++V+ IR FL FF++ HE++PS+ L+P NDPTL+F N+GMVPFKN+FTG +K Y Sbjct: 2 ITSVNDIRQAFLSFFEERDHEIVPSAPLVPQNDPTLLFINAGMVPFKNVFTGADKRPYDK 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT+ F L Sbjct: 62 AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIINAWTLLTEVFGL 121 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L +T++ D+EA LWKKI+GL ++IIRI T DNFWSM +TGPCGPCSEIF+D G Sbjct: 122 PAEKLLVTIFHTDDEAASLWKKIAGLPEERIIRIATADNFWSMGDTGPCGPCSEIFYDHG 181 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 IPGG PGS EE G+R+IEIWNLVFMQF+QQ ER LPK SIDTGMGLER+ATVLQ Sbjct: 182 PQIPGGPPGSPEEDGDRFIEIWNLVFMQFDQQPDGERLSLPKPSIDTGMGLERIATVLQG 241 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNY+ DLF+ LI AS VTG G++++ HRVI DHLR++SFLI+DG+ P+NEGRGY Sbjct: 242 IHNNYETDLFRALIDASVDVTGRPATGDDLIAHRVIADHLRAASFLISDGVTPSNEGRGY 301 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM YA LG +PL+ L+PAL EMG AYP+LI+ + L+++TLR E+ERF Sbjct: 302 VLRRIMRRAMRYAHGLGAKDPLLTQLVPALVAEMGGAYPDLIRGQSLVQDTLRVEEERFA 361 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL LL L L G+ AFKLYDT+G PLD+ +D L G G+D F+ Sbjct: 362 DLLDRGLKLLADETQSLTPGGTLAGETAFKLYDTYGFPLDLTEDALRRAGY-GLDQAGFD 420 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ Q++RARA G G + E +WF +K GAT FIGY Sbjct: 421 AAMAAQKARARASWQGSGDASAETVWFDVKADSGATDFIGY------------------- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + +V A+ Q GE V E+ +G+++ V +QTPFYAE+GGQ GD G A G+ + Sbjct: 462 ----VHEEAEGVVLAMAQNGERVAESGAGEEIAFVTNQTPFYAESGGQAGDAGTAEGEAV 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 RL ITD +K A + VH A +++G L+ L L +D + R ++ NHSATHL+H AL Sbjct: 518 RLVITDTKKGAGSLHVHQARIDKGTLKEGDVLRLKVDGKRRVRIKSNHSATHLVHAALRR 577 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV+Q GS + P+ RFD +H+ +T A++ +E VN II QN +M EDA Sbjct: 578 HLGDHVTQKGSFVGPESFRFDFSHNDGLTPAQIDEVEAEVNAIIRQNDAGQISLMPYEDA 637 Query: 660 IASGAAALLGTKYNDRVRVVSV---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 I++GA AL G KY D VRV+ + + +S LCGGTHV+ TG+I L IVSE ++ Sbjct: 638 ISAGAMALFGEKYEDEVRVLRLGEDPADPARPYSMELCGGTHVARTGDIALFAIVSEGAV 697 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 +G+RRIEA+TG+ AR++ + + A+ LKVS ++ R+ ++ +E +KL+ L+ Sbjct: 698 ASGVRRIEAVTGEAARAYYKERAASAAAAAAALKVSIADLPARLSQLMDERKKLEKDLVA 757 Query: 775 AKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 A++K L D + D+ F+ ++ V +KEL+ ++ +KK + I + + E Sbjct: 758 ARKKAALGGGDGPRTETVGDITFVGQVVEGVPAKELRGLIADAKKKYEKVIAAFIA-TAE 816 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 KAS+ + V++ L++++ A DL R+ L Sbjct: 817 DKASLSVGVSDALIEQWPAPDLVRIGVDAL 846 >gi|260433747|ref|ZP_05787718.1| alanyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157] gi|260417575|gb|EEX10834.1| alanyl-tRNA synthetase [Silicibacter lacuscaerulensis ITI-1157] Length = 890 Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/898 (48%), Positives = 573/898 (63%), Gaps = 46/898 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M ++ IR+TFL +F K GHE++ SS L+P NDPTLMF NSGMV FKN+FTG E Y+ Sbjct: 1 MPTLNDIRSTFLNYFAKQGHEVVASSPLVPRNDPTLMFVNSGMVQFKNLFTGLETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF + Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIPFAWELITKEFGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF++WKK+ G+ D+IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 DKNRLLTTVYHTDDEAFEIWKKV-GVPEDRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS+EE G+R+IEIWN+VFMQ EQ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSAEEDGDRFIEIWNIVFMQNEQFEDGSMRELDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS T + G+ V+HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKTLIEASADATNVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+P L MG+ Y EL +A+ LIEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAEDPVMHRLVPTLVQLMGAQYSELGRAQALIEETLLLEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD ++ L D L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDEEVAGLPDDAPLPGEAAFKLYDTYGFPLDLTQDALREKGRT-VDTEGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G + +WF + + GAT F+GY+ Sbjct: 419 AAMAEQKAKARAAWAGSGEAADQAVWFDVLDAAGATDFLGYE------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC----AI 535 T V A+++ G +VE+ G+ +V +QTPFY EAGGQ+GDTG Sbjct: 461 -----TEKAEGQVLAVIRDGALVEKLEPGESGWIVSNQTPFYGEAGGQVGDTGVIRRLED 515 Query: 536 GDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D + L + D +K A+ + H VERG+ + L +D+ R + NHSATHLLH Sbjct: 516 RDEVAL-VEDTKKFADAKVIAHKVTVERGVFAKGEPVELEVDHARRSAIRANHSATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL LG HV+Q GS D LRFD +H+K +T E++++E VN I QN PV TRIM Sbjct: 575 EALRETLGEHVAQRGSLNAADRLRFDFSHTKAMTPEEIETVEREVNAFIRQNSPVETRIM 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLL 708 +DA GA AL G KY D VRVVS+ + DG S LCGGTHV TG+I Sbjct: 635 TPDDARKLGAQALFGEKYGDEVRVVSMGKAPTGKGHDGETWSIELCGGTHVRQTGDIGTF 694 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I+ +S+ AG+RRIEA+TG A +L QD +L +AS LK +VV RV+ + +E + Sbjct: 695 VILGDSASSAGVRRIEALTGDAALEYLSTQDRRLAQVASELKAQPEDVVTRVKALLDERK 754 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIA----DVN---FMSHIISEVDSKELKSVMDALQKKIQ 821 LQ A+ + +L + + DVN F++ +S V K+L +++D + ++ Sbjct: 755 ALQNEVAQLRRELAMAGGAGQANGAVAKDVNGIKFLAQALSGVSGKDLPALIDEHKTRLG 814 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 SG ++L+ S KA+V VT DL + +AVDL R + + LGG GGGGRP MAQ GG Sbjct: 815 SGAVLLIADSG-GKAAVAAGVTSDLTQKISAVDLVRAAVQELGGKGGGGRPDMAQGGG 871 >gi|56696902|ref|YP_167264.1| alanyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] gi|81558517|sp|Q5LRU1|SYA_SILPO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56678639|gb|AAV95305.1| alanyl-tRNA synthetase [Ruegeria pomeroyi DSS-3] Length = 890 Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/915 (48%), Positives = 574/915 (62%), Gaps = 46/915 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +++ IR+TFL +F K GH ++PSS L+P NDPTLMFTNSGMV FKN FTG +K Y Sbjct: 1 MPSLNDIRSTFLNYFAKQGHTIVPSSPLVPRNDPTLMFTNSGMVQFKNCFTGVDKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+L+T++FD+ Sbjct: 61 ATTAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKSEAIPFAWELITRDFDI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TVY D+EAF++WKK+ G+ +IIRI T+DNFW M TGPCGPC+EIF+D G Sbjct: 121 PKDRLYTTVYHTDDEAFEIWKKV-GVPESRIIRIATSDNFWQMGPTGPCGPCTEIFYDHG 179 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + I GG PGS EE G+R+IEIWN+VFMQ E+ L SIDTGMGLER+ +LQ Sbjct: 180 DHIWGGPPGSPEEDGDRFIEIWNIVFMQNEKFEDGSMVDLDMQSIDTGMGLERIGALLQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLFK LI+AS T + G+ V+HRVI DHLRS+SFLIADG++P+N+GRGY Sbjct: 240 SHDNYDTDLFKALIEASADATSVDPYGDQNVHHRVIADHLRSTSFLIADGVMPSNDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG +P+M L+ L +MG+AYPEL +A+ LIEETL E+ RF Sbjct: 300 VLRRIMRRAMRHAHLLGAKDPVMHRLVRTLVGQMGAAYPELGRAQALIEETLLLEETRFK 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLDRGL LLD L+ L ++ L G+ AFKLYDT+G PLD+ QD L +G +D F+ Sbjct: 360 QTLDRGLKLLDDELTALPEEAPLPGEAAFKLYDTYGFPLDLTQDALREKGRK-VDTDGFD 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQ+++ARA G G T IWF + + GAT F+GYD Sbjct: 419 AAMAEQKAKARAAWAGSGESTDNAIWFDVLDVAGATDFLGYD------------------ 460 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC----AI 535 T A+V G + + G VV +QTPFY E+GGQ+GDTG Sbjct: 461 -----TEKAEGQALALVVDGALSDRIAEGGSGWVVTNQTPFYGESGGQVGDTGVIRRLEN 515 Query: 536 GDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D + L + D +K A+G ++ H +ERG L ++ L +D+ R + NHSATHLLH Sbjct: 516 RDHVAL-VEDSRKFADGKVYAHKVTMERGALAKGDAVELEVDHARRSAIRANHSATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL LG HV+Q GS D LRFD +H+K +T AEL + VN I QN V TRIM Sbjct: 575 EALREALGDHVAQRGSLNAADRLRFDFSHAKALTEAELAQVGAEVNRFIRQNSRVETRIM 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV------EYEDGGVHSSALCGGTHVSSTGEIMLL 708 +DA A GA AL G KY D VRVVS+ + DG S LCGGTHV+ TG+I + Sbjct: 635 TPDDARAIGAQALFGEKYGDEVRVVSMGRAETGKGADGKTWSIELCGGTHVAQTGDIGMF 694 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++ +S+ AG+RRIEA+TGQ A HL + +L + + LK V RV + +E + Sbjct: 695 VLLGDSASSAGVRRIEALTGQAAFDHLSQEGARLSQVTAMLKAQPAEVAERVRALMDERK 754 Query: 769 KLQ--LIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 LQ + +R L H++ V F++ ++S V K+L +++D + ++ Sbjct: 755 ALQNEVAQLRRDLAMAGGAGQGGGAETHEVGGVPFLAQVLSGVSGKDLPALIDEHKSRMG 814 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 SG ++L+ KA+V VTEDL R +AVDL + + LGG GGGGRP MAQ GG + Sbjct: 815 SGAVLLI-ADAGGKAAVAAGVTEDLTARVSAVDLVKAAVAALGGKGGGGRPDMAQGGGQD 873 Query: 882 GNKADQAIAGVASFL 896 KAD AI L Sbjct: 874 AGKADAAIKAAEQVL 888 >gi|91204886|ref|YP_537241.1| alanyl-tRNA synthetase [Rickettsia bellii RML369-C] gi|122426110|sp|Q1RKG2|SYA_RICBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91068430|gb|ABE04152.1| Alanyl-tRNA synthetase [Rickettsia bellii RML369-C] Length = 877 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/881 (47%), Positives = 565/881 (64%), Gaps = 35/881 (3%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+ F+ +F+ N H + SS LIP NDP+LMF NSGMV FKN+FTGQEK Y T QK Sbjct: 9 IRSKFISYFKANNHTHVSSSPLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYDKAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + +LY Sbjct: 69 SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 TVY D+EA WKKI+G S D+IIRI TNDNFWSM + GPCGPCSEIF+D GE I GG Sbjct: 129 ATVYHTDDEAASYWKKIAGFSDDRIIRIKTNDNFWSMGDLGPCGPCSEIFYDHGEQIYGG 188 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEIWN+VFMQ+EQ NK R LPK SIDTGMGLERM VLQ NNYD Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQINKDTRIDLPKKSIDTGMGLERMTAVLQHVNNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K E ++RVI DHLR+ SFLIADG++P++EGRGYVLRRIM Sbjct: 249 IDLFQEIISFTENILKVKVEAEAKFSYRVIADHLRACSFLIADGVVPSSEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRAM +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF TL+RG Sbjct: 309 RRAMRHAHILGSKEPLMYKLLPKLVDLMGNTYPELKRAESFISSILEQEEIRFKTTLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL +L L+G+VAFKLYDT+G PLD+ +DIL R +A +D F Q + EQ Sbjct: 369 LKLLSEETENLNAGGRLSGEVAFKLYDTYGFPLDLTEDILKNRNIA-VDHQGFEQQMLEQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + AR LG G T+++WF +K KYG+T+F+GY+L + D K++ L Sbjct: 428 KECARKSWLGSGESKTDQLWFDIKAKYGSTEFLGYNL------NEADGKIVALIKDNALV 481 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N +S I + ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 482 NDISEIDTQFL----------------LIANQTPFYGESGGQMGDIGVIKTQNCEIEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I VH ++++G + T+ + +ID + R+ L I+HSATHLLH L ILG HV Sbjct: 526 TLKYLGFIIVHKCVLKKGKVITDENANFSIDVKYRQNLRIHHSATHLLHAVLHQILGKHV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + LRFD++H K +T E+ IED VN+II N V T +M+ EDA+ GA Sbjct: 586 TQKGSLVATSYLRFDISHPKALTPEEIVLIEDKVNEIIRDNHEVDTTLMSTEDAVKQGAM 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AGIRRIEA Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRHTGDIGCFKITSESAIAAGIRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782 + G+ + ++ LK++ + LK ++ +V +V I E ++L+ K L L+ Sbjct: 701 VCGEFVIKLIREKEGLLKNIENSLKTNKNELVSKVNNILERNKELEKELEKTYLASLDLS 760 Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 VE + KI ++ + + +D+K L+ + L KK++ +++ VG + K S+ + Sbjct: 761 VEQIEKQAEKIKEIKLIYCHVENLDNKILRQAAENLTKKVEDLVVVYVG-NNSSKLSITV 819 Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + D+FNA +A+ + LGG GGGG+P +AQ+GG + Sbjct: 820 GISRAITDKFNAGFIAKELSLFLGGSGGGGQPSIAQAGGSD 860 >gi|157826336|ref|YP_001494056.1| alanyl-tRNA synthetase [Rickettsia akari str. Hartford] gi|205830190|sp|A8GQ73|SYA_RICAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157800294|gb|ABV75548.1| alanyl-tRNA synthetase [Rickettsia akari str. Hartford] Length = 878 Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/896 (46%), Positives = 566/896 (63%), Gaps = 35/896 (3%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K Y T QK Sbjct: 9 VRSKFITYFKTNNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQTKRPYHTAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + +LY Sbjct: 69 SVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 129 ATIYHTDDEAASCWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEIWN+VFMQ+EQ +K R LP+ SIDTGMGLERM VLQ +NNYD Sbjct: 189 LPGTKYEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVSNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM Sbjct: 249 IDLFQEIINFTENIVKVKIEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRAM +A +LG EPLM LLP L MGS YPEL +A+ I L E+ RF TL+RG Sbjct: 309 RRAMRHAHMLGSQEPLMYKLLPKLVDLMGSVYPELKRAESFISRILEQEEIRFKTTLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G++AFKLYDT+G PLD+ +DIL R ++ ID F + + Q Sbjct: 369 LKLLTEETETLKKGNELSGEIAFKLYDTYGFPLDLTEDILKNRDIS-IDHKGFEEQMLAQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + RAR LG G T+++WF +KE++G+T+F+GY L + C+ + Sbjct: 428 KERARKAWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAECKIIALIKD 477 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N + + +K I Q ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 478 NNLVNDIKKIDTQFLLIS------------NQTPFYGESGGQMGDIGTIFAKDSDIEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I H I+++G + S +ID + R+ L I+HSATH+LH L +LG HV Sbjct: 526 TLKYLGSIIAHKCILKKGQINVGDSANFSIDIKYRQNLRIHHSATHILHAVLHEVLGQHV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P LRFD++HSK +T E+ SIED VN+II N V T +M EDA+ G Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTHEEITSIEDKVNEIIRDNHEVNTTLMTTEDAVKQGVM 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+RRIEA Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGSFKITSESAIAAGVRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782 + G+ + +D LKS+ + LK ++ +V +V E ++L+ K +L L+ Sbjct: 701 VCGEFVIKLIREKDSLLKSIENSLKTNKNELVTKVNNTLERNKELEKELEKTHLARLDLS 760 Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 +E + I V + I +D+K L+ L K++ I++ + K S+ + Sbjct: 761 IEQIEKQAEDIKGVKLIYRHIENLDNKVLRQAAANLTNKVEDLIVVYI-TGNNDKLSITV 819 Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 V++ + D++NA +A+ + LGG GGGG+ +AQ+GG + K + SF+ Sbjct: 820 AVSKAITDKYNACIIAKELSLFLGGSGGGGQASLAQAGGSDIGKLTNIHEKLYSFI 875 >gi|15604686|ref|NP_221204.1| alanyl-tRNA synthetase [Rickettsia prowazekii str. Madrid E] gi|6226166|sp|Q9ZCA4|SYA_RICPR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|3861381|emb|CAA15280.1| ALANYL-TRNA SYNTHETASE (alaS) [Rickettsia prowazekii] gi|292572518|gb|ADE30433.1| Alanyl-tRNA synthetase [Rickettsia prowazekii Rp22] Length = 877 Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/881 (47%), Positives = 565/881 (64%), Gaps = 39/881 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y T QK Sbjct: 9 VRSKFITYFKANNHTHVPASSLIPDNDPSLMFVNSGMVQFKNVFTGQEKRSYNKAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL++VG T RHHTFFEMLGNFSFG YFKE+AI WDLLTKEF+L + +LY Sbjct: 69 SLRAGGKHNDLEHVGYTARHHTFFEMLGNFSFGDYFKEQAIYYTWDLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +T+Y D+ A WKKI+GL D+IIRI TNDNFWSM +TGPCGPCSEIFFD GE I GG Sbjct: 129 VTIYHTDDPAASYWKKIAGLKDDRIIRIKTNDNFWSMGDTGPCGPCSEIFFDHGEEIYGG 188 Query: 187 LPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ +E +R+IEIWN+VFMQ+EQ NK+ R LPK SIDTGMGLERM VLQ NNYD Sbjct: 189 LPGTKDENCDRFIEIWNMVFMQYEQINKETRIELPKKSIDTGMGLERMTAVLQHVNNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K +G ++RVI DHLR+SSFLIADGI+P+NEGRGYVLRRIM Sbjct: 249 IDLFQEIINFTENIVKIKVDGEAKFSYRVIADHLRASSFLIADGIIPSNEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRAM +A +LG EPLM LLP L MG+ YPEL A+ I L E+ RF TL+RG Sbjct: 309 RRAMRHAHMLGAKEPLMYKLLPKLVDLMGNIYPELKIAESFISSILEQEEIRFKTTLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G+VAFKLYDT+G PLD+ +DIL R + +D F + + Q Sbjct: 369 LKLLTEETKTLTKGSKLSGEVAFKLYDTYGFPLDLTEDILKNRDIT-VDHKGFEELMLTQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + RAR LG G T+++WF +KE+YG+T+F+GY L Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQYGSTEFLGYTL----------------------- 464 Query: 486 NGVSSIVKAIVQQGEIVE--EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 N + A+++ +V+ + ++ Q + ++ +QTPFY E+GGQ+GD G G +++ Sbjct: 465 NEAECKIIALIKNNNLVDNIQEINTQFL-LIANQTPFYGESGGQMGDIGMIFSQGSEIEV 523 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D K I VH I+++G + + L I+ + R+ L I+HSATH+LH L ILG Sbjct: 524 IDTFKYLRSIIVHKCILKKGKINIGENANLNINIRYRQNLRIHHSATHILHAVLHKILGK 583 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 V Q GS +T LRFD+ HSK IT+ E+ IED VN+II N V T +M EDAI G Sbjct: 584 QVIQKGSLVTSTYLRFDINHSKAITNQEITLIEDQVNEIIRNNHEVTTTVMFTEDAIKQG 643 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY+ VRVV + G S LC GTHV TG+I I+SES+I AG+RRI Sbjct: 644 AIALFGEKYDSEVRVVKI-----GETSLELCCGTHVKRTGDIGSFKIISESAIAAGVRRI 698 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---RKLQ 780 EA+ G+ + +D LKS+ S K ++ ++ +V I E ++L+ K L Sbjct: 699 EAVCGEFVIKLIRERDSLLKSIESSFKTNKNELITKVINILERNKELEKELEKAHLASLD 758 Query: 781 LNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 L++E + +I + + + +++K L+ + L KK+++ I++ + + K S+ Sbjct: 759 LSIEQIKKQTKEITGIKLLYKEVGNINNKILRQAAENLTKKVENLIVVYIAHGVD-KLSI 817 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + V++ + D+FNA +A+ + LGG GGGG+ +AQ+GG Sbjct: 818 TVAVSKAITDKFNAGIIAKELSLFLGGSGGGGQASIAQAGG 858 >gi|67459745|ref|YP_247369.1| alanyl-tRNA synthetase [Rickettsia felis URRWXCal2] gi|75535865|sp|Q4UJT5|SYA_RICFE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|67005278|gb|AAY62204.1| Alanyl-tRNA synthetase [Rickettsia felis URRWXCal2] Length = 878 Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/880 (47%), Positives = 567/880 (64%), Gaps = 37/880 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y T QK Sbjct: 9 VRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + +LY Sbjct: 69 SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TVY DEEA WKKI+G D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 129 VTVYHTDEEAASYWKKIAGFRDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEIWN+VFMQ+EQ +K R LP+ SIDTGMGLERM VLQ NNYD Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVNNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM Sbjct: 249 IDLFQEIINFTENIVKVKIEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRAM +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF TL+RG Sbjct: 309 RRAMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKTTLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G++AFKLYDT+G PLD+ +DIL R ++ +D F + + Q Sbjct: 369 LKLLTEETETLTKGNELSGEIAFKLYDTYGFPLDLTEDILKNRDIS-VDHKRFEEQMLAQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + RAR LG G T+++WF +KE++G+T+F+GY L + C+ + Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAECKIIALIKD 477 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N + + +K I Q ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQMGDIGMIFSKDSEIEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I VH I+++G ++ + +ID + R+ L I+HSATH+LH L +LG HV Sbjct: 526 TLKYLGSIIVHKCILKKGQIKIGENANFSIDIKYRQNLRIHHSATHILHAVLHEVLGKHV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDA+ GA Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVDTTLMTTEDAVKQGAM 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+RRIEA Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQL 781 + G+ + +D LKS+ S LK ++ ++ +V I E ++L+ +H R L L Sbjct: 701 VCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKELEKELEKVHLAR-LDL 759 Query: 782 NVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 ++E + I V + I +D+K L+ + L KK++ I++ + K S+ Sbjct: 760 SIEQIEKQAEDIKGVKLIYRYIENLDNKVLRQAAENLTKKVEDLIVVYI-TGNNDKLSIT 818 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + V++ + D++ A +A+ + LGG GGGG+ +AQ+GG Sbjct: 819 VAVSKAITDKYKAGIIAKELSLFLGGSGGGGQASLAQAGG 858 >gi|91762223|ref|ZP_01264188.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002] gi|91718025|gb|EAS84675.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1002] Length = 889 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/915 (44%), Positives = 593/915 (64%), Gaps = 54/915 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IRTTFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKN+FTG EK Y TT Sbjct: 6 LNQIRTTFLDYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNVFTGLEKRDYVRATT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF +D+ Sbjct: 66 SQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEEAISYAWNLITKEFGIDKN 125 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY+TVY +DEEAF WKKI+G S D+II+I T+DNFWSM +TGPCGPCSEIF+D G+ + Sbjct: 126 RLYVTVYHDDEEAFNFWKKIAGFSDDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHGDHL 185 Query: 184 PGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GGLPG+ +E+G R+IEIWNLVFMQ+EQ +K +R LPK S+DTGMGLER+A +LQ + Sbjct: 186 EGGLPGTKNEDGNRFIEIWNLVFMQYEQISKDKRINLPKPSVDTGMGLERIAALLQGTHD 245 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NY+ D FK LI ++ +K +N + RVI DHLR+SSFL+A+G+LP+NEGRGYVLR Sbjct: 246 NYETDHFKKLILSASDTLNVKVTDDNQSSFRVIADHLRASSFLLAEGVLPSNEGRGYVLR 305 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RIMRR M ++ LLG +P+ ++ L EM + YPEL +A+ LI+ETL++E+E+F L Sbjct: 306 RIMRRGMRHSHLLGSKKPVFYNIFKTLLEEMSNNYPELERAQSLIKETLKTEEEKFLVLL 365 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 DRG+ +L+ L + K IL G+VAFKLYDT G PLD+ +DIL + + +D F+ + Sbjct: 366 DRGIKILNEELEKVEK--ILPGEVAFKLYDTFGFPLDLTEDILKNKSMT-VDGEKFDLLM 422 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 +E + A+ + G G + ++IWF +K++ GAT F+GY Sbjct: 423 KESKKLAKKNWKGSGDSSVDQIWFDIKDRLGATDFLGYS--------------------- 461 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 T+ +V I++ + V++ + ++ +QTPFY E+GGQ+ DTG + + Sbjct: 462 --TDKAEGVVTLILKNNKEVQDLQENDEGIIITNQTPFYGESGGQVADTGIISKEIFEFE 519 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 ++DVQKK +F H+ V++G ++ + S+ L ID Q R + HSATHLLH AL +LG Sbjct: 520 VSDVQKKLGDLFAHYGKVKKGSVKLKDSVELKIDTQRRNNIRAYHSATHLLHEALRRVLG 579 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV+Q GS + D LRFD +H KPI+ E+K IE VN II + V TRIM ++A+ + Sbjct: 580 EHVTQKGSLVQSDRLRFDFSHMKPISDEEMKKIEHYVNSIIEKKSEVKTRIMTPKEAVEN 639 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY D VRV+S+ E+G S+ LCGGTHV +T +I I+S+SSI AG+RR Sbjct: 640 GALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADIGKFKIISQSSIAAGVRR 699 Query: 723 IEA------------------ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 +EA ++ Q+ + + + K+ L + + V ++++ Sbjct: 700 VEALRDVQLTDFLKEKENQSNLSDQKNEAVIKELETKIIKLGGKPNLQNKDQVTLIKDLN 759 Query: 765 EEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 ++ +L +I K K ++N + ++ K+ N M ++ K+L+ ++D +K+I Sbjct: 760 RQFDQLSVISILKDKDKNKINDQTINGFKVRFQNIM-----DLPFKDLRKLIDEGKKEIG 814 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G++++ I+ + K + + VT+ L ++F+AV + R ++V+GG GGGGR AQ+GG Sbjct: 815 EGLVIIYAIN-DNKVGLAVGVTKTLEEKFDAVKIVRAGSEVIGGKGGGGRADFAQAGGTL 873 Query: 882 GNKADQAIAGVASFL 896 +K +++ + + Sbjct: 874 PDKIEESFENIKKLI 888 >gi|71083347|ref|YP_266066.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062] gi|83305853|sp|Q4FMX6|SYA_PELUB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71062460|gb|AAZ21463.1| alanine-tRNA ligase [Candidatus Pelagibacter ubique HTCC1062] Length = 889 Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/915 (44%), Positives = 592/915 (64%), Gaps = 54/915 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IRTTFL++F+KN H+++ SS+L+P NDPTLMF NSGMV FKNIFTG EK Y TT Sbjct: 6 LNQIRTTFLDYFEKNDHKIVESSNLVPNNDPTLMFANSGMVQFKNIFTGLEKRDYVRATT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+L+TKEF +D+ Sbjct: 66 SQKCVRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEEAISYAWNLITKEFGIDKN 125 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY+TVY DEEAF WKKI+G S D+II+I T+DNFWSM +TGPCGPCSEIF+D G+ + Sbjct: 126 RLYVTVYHNDEEAFNFWKKIAGFSDDRIIKIATSDNFWSMGDTGPCGPCSEIFYDHGDHL 185 Query: 184 PGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GGLPG+ +E+G R+IEIWNLVFMQ+EQ +K +R LPK S+DTGMGLER+A +LQ + Sbjct: 186 EGGLPGTKNEDGNRFIEIWNLVFMQYEQISKDKRINLPKPSVDTGMGLERIAALLQGTHD 245 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NY+ D FK LI ++ +K +N + RVI DHLR+SSFL+A+G+LP+NEGRGYVLR Sbjct: 246 NYETDHFKKLILSASDTLNVKVTDDNQSSFRVIADHLRASSFLLAEGVLPSNEGRGYVLR 305 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RIMRR M ++ LLG +P+ ++ L EM + YPEL +A+ LI+ETL++E+E+F L Sbjct: 306 RIMRRGMRHSHLLGSKKPVFYNIFKTLLEEMSNNYPELERAQSLIKETLKTEEEKFLVLL 365 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 DRG+ +L+ L + K IL G+VAFKLYDT G PLD+ +DIL + + +D F+ + Sbjct: 366 DRGIKILNEELEKVEK--ILPGEVAFKLYDTFGFPLDLTEDILKNKSMT-VDGEKFDLLM 422 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 +E + A+ + G G + ++IWF +K++ GAT F+GY Sbjct: 423 KESKKLAKKNWKGSGDSSVDQIWFDIKDRLGATDFLGYS--------------------- 461 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 T+ +V I++ + V++ + ++ +QTPFY E+GGQ+ DTG + + Sbjct: 462 --TDKAEGVVTLILKNNKEVQDLQENDEGIIITNQTPFYGESGGQVADTGIISKEAFEFE 519 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 ++DVQKK +FVH+ V+RG ++ + ++ L ID Q R + HSATHLLH AL +LG Sbjct: 520 VSDVQKKLGDLFVHYGKVKRGSVKLKDNVELKIDTQRRNNIRAYHSATHLLHEALRRVLG 579 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV+Q GS + D LRFD +H KPI+ E++ IE VN II + V TRIM ++A+ + Sbjct: 580 EHVTQKGSLVQSDRLRFDFSHMKPISDEEIRKIEHYVNSIIEKKSEVKTRIMTPKEAVEN 639 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY D VRV+S+ E+G S+ LCGGTHV +T +I I+S+SSI AG+RR Sbjct: 640 GALALFGEKYGDEVRVLSMGDEEGKFFSTELCGGTHVVNTADIGKFKIISQSSIAAGVRR 699 Query: 723 IEA------------------ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 +EA ++ Q+ + + + K+ L + + V ++++ Sbjct: 700 VEALRDAQLIDFLKEKENQSNLSDQKNEAVIKELETKIIKLGGKPNLQNKDQVTLIKDLN 759 Query: 765 EEYRKLQLI---HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 ++ +L +I K K ++N + ++ K+ N I ++ K+L+ ++D +K+I Sbjct: 760 RQFDQLSVISILKDKDKNKINDQTINGFKVRFQN-----IIDLPFKDLRKLIDEGKKEIG 814 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G++++ I+ + K + + VT+ L +F+AV + R ++V+GG GGGGR AQ+GG Sbjct: 815 EGLVVIYAIN-DNKVGLAVGVTKTLEKKFDAVKIVRAGSEVIGGKGGGGRADFAQAGGTL 873 Query: 882 GNKADQAIAGVASFL 896 +K +++ + + Sbjct: 874 PDKIEESFENIKKLI 888 >gi|157804247|ref|YP_001492796.1| alanyl-tRNA synthetase [Rickettsia canadensis str. McKiel] gi|205830191|sp|A8F078|SYA_RICCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157785510|gb|ABV74011.1| alanyl-tRNA synthetase [Rickettsia canadensis str. McKiel] Length = 878 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/900 (45%), Positives = 575/900 (63%), Gaps = 43/900 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y T QK Sbjct: 9 VRSKFITYFKTNNHTHVPASSLIPQNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTK+F+L + +LY Sbjct: 69 SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKKFELPKNKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +T+Y D+EA WKKI+G D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 129 VTIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGENIYGG 188 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEI N+VFMQ+EQ +K R LP+ SIDTGMGLERM +LQ NNYD Sbjct: 189 LPGTKDEDGDRFIEILNMVFMQYEQVDKDTRIELPQKSIDTGMGLERMTAILQHVNNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K +G ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM Sbjct: 249 IDLFQKIIDYTENIVKVKVKGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RR+M +A +LG EPLM LLP L MG+ YPEL +++ I L E+ RF TL+RG Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNIYPELKRSESFISNILEQEEIRFKTTLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K + L+G++AFKLYDT+G PLD+ +DIL ++ +D F + + Q Sbjct: 369 LKLLSEETETLTKGDKLSGEIAFKLYDTYGFPLDLTKDILKNYDIS-VDHQGFKEQMLAQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + RAR LG G T ++WF +KE+YG+T+F+GY L + + K++ +L Sbjct: 428 KERARKSWLGSGEYKTNQLWFDIKEQYGSTEFLGYTL------NEAECKIIVLIKDNNLV 481 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N + + + ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 482 NNIQE----------------TDTQFLLISNQTPFYGESGGQMGDNGTIFAKDSEVEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I VH I+++G + + +ID + R+ L I+HSATH+LH L +LG HV Sbjct: 526 TLKYLGSIIVHKCILKKGKIHVGENANFSIDVKYRQNLRIHHSATHILHAVLHEVLGKHV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P LRFD+++SK +T+ E+ IED VN+II N V T +M EDA+ GA Sbjct: 586 TQKGSLVAPTYLRFDISYSKAVTNEEITLIEDKVNEIIRANHEVNTTLMATEDAVKQGAM 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G +S LCGGTHV G+I I +ES+I AGIRRIEA Sbjct: 646 ALFGEKYDSEVRVVKM-----GNNSLELCGGTHVRRLGDIGCFKITNESAIAAGIRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-------EYRKLQLIHAKRK 778 + G+ + ++ LKS+ S LK ++ ++ +V I E E K+ L H Sbjct: 701 VCGEFVIKLMREKENLLKSVESSLKTNKNELITKVNNILERNKGLEKELEKVHLAH---- 756 Query: 779 LQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 L L+++ ++ +I V + I +++K L+ + L KK++ I++ + + K Sbjct: 757 LDLSIDQINKEAEEIKGVKLIYQYIENLNNKVLRQAAENLTKKVEDLIVVYI-VGNSDKL 815 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 S+ + V++ + D+FNAV++A+ + LGG GGGG+ +AQ+GG + K ++ + S L Sbjct: 816 SITVAVSKAITDKFNAVNIAKELSLFLGGTGGGGQASLAQAGGHDIGKLNKIHEKLYSLL 875 >gi|51474024|ref|YP_067781.1| alanyl-tRNA synthetase [Rickettsia typhi str. Wilmington] gi|59798518|sp|Q68VQ7|SYA_RICTY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|51460336|gb|AAU04299.1| Alanine translase [Rickettsia typhi str. Wilmington] Length = 877 Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/881 (47%), Positives = 563/881 (63%), Gaps = 39/881 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y T QK Sbjct: 9 VRSKFITYFKANNHTHVPASSLIPDNDPSLMFVNSGMVQFKNVFTGQEKRSYNKAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL++VG T RHHTFFEMLGNFSFG YFKE+AI WDLLTKEF+L + +LY Sbjct: 69 SLRAGGKHNDLEHVGYTARHHTFFEMLGNFSFGDYFKEQAIYYTWDLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +T+Y D+ A W+KISGL D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 129 VTIYHTDDTAASYWEKISGLRDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEEIYGG 188 Query: 187 LPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ +E +R+IEIWN+VFMQ+EQ NK+ R LPK SIDTGMGLERM VLQ NNYD Sbjct: 189 LPGTKDEDCDRFIEIWNMVFMQYEQINKETRIELPKKSIDTGMGLERMTAVLQHVNNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K +G ++RVI DHLR+SSFLIADGI+P+NEGRGYVLRRIM Sbjct: 249 IDLFQEIINFTENIVKVKVDGEAKFSYRVIADHLRASSFLIADGIIPSNEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRAM +A +LG EPLM LLP L MG+ YPEL A+ I L E+ RF TL+RG Sbjct: 309 RRAMRHAHMLGAKEPLMYKLLPKLVDLMGNIYPELKIAEGFISSILEQEEIRFKTTLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G+VAFKLYDT+G PLD+ +DIL R +A +D F + + Q Sbjct: 369 LKLLTEETKTLTKGNKLSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEELMLIQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + RAR LG G T+++WF +KE+YG+T+F+GY L + C+ + Sbjct: 428 KERARTSWLGSGESKTDQLWFDIKEQYGSTEFLGYTL----------NEAKCKIIALIKN 477 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N ++ ++ + Q ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 478 NNLADTIQEVDTQ------------FLLIANQTPFYGESGGQMGDIGMIFSQDSEVEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I VH I+++G + + ID + R+ L I+HSATH+LH L ILG V Sbjct: 526 TLKYLRSIIVHKCILKKGKINIGENANFNIDIKYRKNLRIHHSATHILHAVLHKILGKQV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 Q GS +T LRFD+ HSK IT+ E+ IED VN+II N V T +M EDAI GA Sbjct: 586 IQKGSLVTSTYLRFDINHSKAITNEEITLIEDKVNEIIRNNHEVNTTVMFTEDAIKQGAI 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LC GTHV TG+I I+SESSI AG+RRIEA Sbjct: 646 ALFGEKYDSEVRVVKI-----GETSLELCCGTHVKRTGDIGAFKIISESSIAAGVRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---LQLN 782 + G+ + +D +K + S +K ++ ++ +V I E ++L+ K L L+ Sbjct: 701 VCGEFVIKLIREKDNLIKLIESSVKTNKNELITKVTNILERNKELEKELEKAHLAGLDLS 760 Query: 783 VEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838 +E + +IA + + + +++K L+ + L +K+++ I++ + G+ K S+ Sbjct: 761 IEQIKKQAEQIAGIKLLYKKVGNINNKILRQAAENLTQKLENLIVVYIAHGVG---KLSI 817 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + V++ + D+FNA +A+ + LGG GGGG+ +AQSGG Sbjct: 818 TVAVSKAITDKFNAGIIAKELSLFLGGSGGGGKASIAQSGG 858 >gi|239948196|ref|ZP_04699949.1| alanyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922472|gb|EER22496.1| alanyl-tRNA synthetase [Rickettsia endosymbiont of Ixodes scapularis] Length = 878 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/881 (47%), Positives = 566/881 (64%), Gaps = 39/881 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y T QK Sbjct: 9 VRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAATSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + +LY Sbjct: 69 SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y D+EA WKKI+G D+IIRI TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 129 ATIYHTDDEAASYWKKIAGFGDDRIIRIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEIWN+VFMQ+EQ +K R LP+ SIDTGMGLERM VLQ NNYD Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTRIELPQKSIDTGMGLERMTAVLQHVNNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K EG +RVI DHLR+SSFLIADG++P+NEGR YVLRRIM Sbjct: 249 IDLFQEIINFTENIVKVKVEGEAKFFYRVIADHLRASSFLIADGVIPSNEGRSYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF TL+RG Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKATLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G+VAFKLYDT+G PLD+++DIL R ++ +D F + + Q Sbjct: 369 LKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLIEDILKNRDIS-VDHKGFEEQMLMQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + RAR LG G T+++WF +KE++G+T+F+GY L + C+ + Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAECKIIALIKD 477 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N + + +K I Q ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQMGDIGTIFAKDSEVEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I VH I+++G + + +ID + R+ L I+HSATH+LH L +LG HV Sbjct: 526 TLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDA+ GA Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEINLIEDKVNEIIRDNHEVNTTLMATEDAVKQGAM 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+RRIEA Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRCTGDIGCFKITSESAIAAGVRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782 + G+ + +D LKS+ S LK ++ ++ +V I E RKL+ K L L+ Sbjct: 701 VCGEFVIKLMREKDNLLKSVESSLKTNKNELITKVNNILERNRKLEKELEKTHLASLDLS 760 Query: 783 VEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838 +E + +I + + + +D+K L+ + L KK++ I++ + GI K S+ Sbjct: 761 IEQIEKQAEQITGIKLLHKKVGNIDNKILRQAAENLTKKLEDLIVVYIAEGIG---KLSI 817 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG Sbjct: 818 TVAVSKAITDKYNAGIIAKELSLFLGGSGGGGQASLAQAGG 858 >gi|157965032|ref|YP_001499856.1| alanyl-tRNA synthetase [Rickettsia massiliae MTU5] gi|157844808|gb|ABV85309.1| Alanyl-tRNA synthetase [Rickettsia massiliae MTU5] Length = 883 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/881 (46%), Positives = 563/881 (63%), Gaps = 39/881 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y T QK Sbjct: 14 VRSKFITYFKANNHTHVPTSSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAVTSQK 73 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + +LY Sbjct: 74 SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 133 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 134 ATIYHTDDEAASYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 193 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ NNY+ Sbjct: 194 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYN 253 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM Sbjct: 254 IDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 313 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF TL+RG Sbjct: 314 RRSMRHAHMLGAKEPLMYKLLPKLVDLMGNVYPELKRAERFISSILEQEEIRFKATLERG 373 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G+VAFKLYDT+G PLD+ +DIL R ++ +D F + + Q Sbjct: 374 LKLLTEETEMLTKGNELSGEVAFKLYDTYGFPLDLTEDILKTRDIS-VDHKGFEEQMLMQ 432 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + RAR LG G T+++WF +KE++G+T+F+GY L + C+ + Sbjct: 433 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 482 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N + + +K I Q ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 483 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 530 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I VH I+++G + + +ID + R+ L I+HSATH+LH L +LG HV Sbjct: 531 TLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 590 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T M EDA+ GA Sbjct: 591 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVNTTFMATEDAVKQGAM 650 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LC GTHV TG+I I SES+I AG+RRIEA Sbjct: 651 ALFGEKYDSEVRVVKM-----GETSLELCAGTHVRRTGDIGCFKITSESAIAAGVRRIEA 705 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782 + G+ + +D LKS+ S LK ++ ++ +V I E ++++ K L L+ Sbjct: 706 VCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKEVEKELEKTHLASLDLS 765 Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838 +E + +I + + + +D+K L+ + L KK++ I++ + GI K S+ Sbjct: 766 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 822 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG Sbjct: 823 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 863 >gi|205830251|sp|A8F323|SYA_RICM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 878 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/881 (46%), Positives = 563/881 (63%), Gaps = 39/881 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y T QK Sbjct: 9 VRSKFITYFKANNHTHVPTSSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + +LY Sbjct: 69 SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 129 ATIYHTDDEAASYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ NNY+ Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYN 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM Sbjct: 249 IDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF TL+RG Sbjct: 309 RRSMRHAHMLGAKEPLMYKLLPKLVDLMGNVYPELKRAERFISSILEQEEIRFKATLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G+VAFKLYDT+G PLD+ +DIL R ++ +D F + + Q Sbjct: 369 LKLLTEETEMLTKGNELSGEVAFKLYDTYGFPLDLTEDILKTRDIS-VDHKGFEEQMLMQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + RAR LG G T+++WF +KE++G+T+F+GY L + C+ + Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N + + +K I Q ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I VH I+++G + + +ID + R+ L I+HSATH+LH L +LG HV Sbjct: 526 TLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T M EDA+ GA Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVNTTFMATEDAVKQGAM 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LC GTHV TG+I I SES+I AG+RRIEA Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCAGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782 + G+ + +D LKS+ S LK ++ ++ +V I E ++++ K L L+ Sbjct: 701 VCGEFVIKLMREKDSLLKSIESSLKTNKNELITKVNNILERNKEVEKELEKTHLASLDLS 760 Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838 +E + +I + + + +D+K L+ + L KK++ I++ + GI K S+ Sbjct: 761 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858 >gi|229587224|ref|YP_002845725.1| alanyl-tRNA synthetase [Rickettsia africae ESF-5] gi|228022274|gb|ACP53982.1| Alanyl-tRNA synthetase [Rickettsia africae ESF-5] Length = 878 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/881 (46%), Positives = 564/881 (64%), Gaps = 39/881 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K Y T QK Sbjct: 9 VRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + +LY Sbjct: 69 SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 129 ATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ NNYD Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM Sbjct: 249 IDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF TL+RG Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKATLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G+VAFKLYDT+G PLD+ +DIL R +A +D F + + Q Sbjct: 369 LKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQMLMQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + RAR LG G T+++WF +KE++G+T+F+GY L + C+ + Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N + + +K I Q ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I +H I++RG + + +ID + R+ L I+HSATH+LH L +LG HV Sbjct: 526 TLKYLGSIIIHKCILKRGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDAI GA Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAIKQGAM 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+RRIEA Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782 + G+ + + +D LKS+ S K ++ ++ +V I E ++++ K L L+ Sbjct: 701 VCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLASLDLS 760 Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838 +E + +I + + + +D+K L+ + L KK++ I++ + GI K S+ Sbjct: 761 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858 >gi|34581082|ref|ZP_00142562.1| alanyl-tRNA synthetase [Rickettsia sibirica 246] gi|28262467|gb|EAA25971.1| alanyl-tRNA synthetase [Rickettsia sibirica 246] Length = 878 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/881 (46%), Positives = 565/881 (64%), Gaps = 39/881 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQEK Y T QK Sbjct: 9 VRSKFITYFKANNHIHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQEKRPYNKAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + +LY Sbjct: 69 SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y D+EA WK+I+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 129 ATIYHTDDEAAAYWKQIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ NNYD Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM Sbjct: 249 IDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF TL+RG Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKATLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G+VAFKLYDT+G PLD+ +DIL R +A +D F + + Q Sbjct: 369 LKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQMLMQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + RAR LG G T+++WF +KE++G+T+F+GY L + C+ + Sbjct: 428 KERARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N + + +K I Q ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I +H I+++G + + +ID + R+ L I+HSATH+LH L +LG HV Sbjct: 526 TLKYLGSIIIHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDAI GA Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAIKQGAM 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+RRIEA Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782 + G+ + + +D LKS+ S K ++ ++ +V I E ++++ K L L+ Sbjct: 701 VCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLASLDLS 760 Query: 783 VEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838 +E + +I + + + +D+K L+ + L KK++ I++ + GI K S+ Sbjct: 761 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858 >gi|15893250|ref|NP_360964.1| alanyl-tRNA synthetase [Rickettsia conorii str. Malish 7] gi|20532256|sp|Q92G00|SYA_RICCN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|15620469|gb|AAL03865.1| alanyl-tRNA synthetase [Rickettsia conorii str. Malish 7] Length = 878 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/881 (46%), Positives = 565/881 (64%), Gaps = 39/881 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K Y T QK Sbjct: 9 VRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + +LY Sbjct: 69 SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 129 ATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ NNYD Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM Sbjct: 249 IDLFQEIINFTENIVKVKVEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF TL+RG Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKATLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G+VAFKLYDT+G PLD+ +DIL R +A +D F + + Q Sbjct: 369 LKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQMLMQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 ++RAR LG G T+++WF +KE++G+T+F+GY L + C+ + Sbjct: 428 KARARKSWLGSGESKTDQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N + + +K I Q ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I +H I+++G + + +ID + R+ L I+HSATH+LH L +LG HV Sbjct: 526 TLKYLGSIIIHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDAI GA Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAIKQGAM 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+RRIEA Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782 + G+ + + +D LKS+ S K ++ ++ +V I E ++++ K L L+ Sbjct: 701 VCGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLASLDLS 760 Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838 +E + +I + + + +D+K L+ + L KK++ I++ + GI K S+ Sbjct: 761 IEQIEKQSAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858 >gi|254717705|ref|ZP_05179516.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1] Length = 768 Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/777 (50%), Positives = 530/777 (68%), Gaps = 36/777 (4%) Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F L + +L +TVY D++A WKKI+GLS D+IIRI T+DNFW+M +TGPCGPCSEIF+ Sbjct: 1 FGLPKDKLLVTVYHTDDDAANFWKKIAGLSDDRIIRIPTSDNFWAMGDTGPCGPCSEIFY 60 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G+ I GG PGS EE G+R+IEIWNLVFMQFEQQ + R LP+ SIDTGMGLER+A V Sbjct: 61 DHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPRPSIDTGMGLERIAAV 120 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+SSFLIADG+LP+NEG Sbjct: 121 LQGVHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRASSFLIADGVLPSNEG 180 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI+A+ LI ETL+ E+ Sbjct: 181 RGYVLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELIRAESLISETLKLEET 240 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ QD L RG+A +D Sbjct: 241 RFRKTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLTQDALRQRGIA-VDTE 299 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 300 GFNVAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE--------------- 344 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 T ++ ++V+ V G+ + VV +QTPFY E+GGQ GDTG G Sbjct: 345 --------TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFYGESGGQQGDTGTISG 396 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G + + D QKK EG+FVH V G + + L +D R ++ NHSATHLLH A Sbjct: 397 EGFVIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRTRIRSNHSATHLLHEA 456 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+II QN PV TR+M Sbjct: 457 LRETLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANEIILQNAPVTTRLMAV 516 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +DAIA GA AL G KY D VRVVS+ + G +S LCGGTHV TG+I L+ I+ Sbjct: 517 DDAIAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGGTHVRQTGDIGLVRII 576 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 SE + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V+ RV + +E +KL Sbjct: 577 SEGGVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADVLDRVNALIDERKKLE 636 Query: 771 -QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 +L A++KL L + + + VNF+ I++ V ++LK + D +K++ SG++ Sbjct: 637 RELADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLKPLADEGKKQVGSGVV 696 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + +G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGGRP MAQ+GGP+G Sbjct: 697 LFIGVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGGRPDMAQAGGPDG 753 >gi|114775361|ref|ZP_01450929.1| alanyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1] gi|114553472|gb|EAU55853.1| alanyl-tRNA synthetase [Mariprofundus ferrooxydans PV-1] Length = 871 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/902 (45%), Positives = 564/902 (62%), Gaps = 44/902 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FL++F GH ++ SSSL+P DPTLMFTN+GMV FK++F G E Y+ TT Sbjct: 3 TSEIRKKFLDYFAAEGHTIVDSSSLVPHGDPTLMFTNAGMVQFKHVFLGNESRPYRTATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT E LD Sbjct: 63 SQKCVRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKHDAIRYAWQFLTGELKLDPA 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL+ITV++ED+EA+ +W K G+ AD+I RI DNFWSM +TGPCGPCSEIF+D G + Sbjct: 123 RLFITVFEEDDEAYDIWTKEVGIPADRIARIGAKDNFWSMGDTGPCGPCSEIFYDHGADV 182 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GG PG++EE G+RYIEIWNLVFMQ+++ LP S+DTGMGLER+A V+Q N Sbjct: 183 WGGPPGTAEEDGDRYIEIWNLVFMQYDRDEDGTLTPLPHPSVDTGMGLERVAAVMQGVHN 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NYDIDLF LI A+ +TG++ + + V+ RV+ DHLRS SFL+ADG+LP+NEGRG+V Sbjct: 243 NYDIDLFARLIDAAGALTGVRMGDDPVSDVSLRVLADHLRSVSFLLADGVLPSNEGRGFV 302 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA + RLLG E + L+ AL EMG + EL +++ IE+ +R E+ERF K Sbjct: 303 LRRILRRACRHGRLLGMYEAFIYKLVDALVAEMGDHFAELKESQGNIEQVIRIEEERFIK 362 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLD+GL L++ + GK + G+ F LYDT G P D+ DIL ++ +D+ F + Sbjct: 363 TLDKGLKLVEQAAASAGKGGTIPGETLFALYDTFGFPTDLTADILKGTDIS-LDMDGFER 421 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +EEQR+RARA G G K F L+E +G T+F+GYD L Sbjct: 422 CMEEQRTRARAAWGGSGESALPKALFELREHHGPTEFLGYDTLSS--------------- 466 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGI 539 ++ +++ GE V+ +G++ ++ +QTPFYAE+GGQ GDTG IGD I Sbjct: 467 --------EGVITGLIRDGEAVDTLHAGEEGWLIANQTPFYAESGGQAGDTGLITIGDAI 518 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++D +K +FVH V +G + +D R + NH+ATHL+H L Sbjct: 519 -FEVSDTRKMLSDLFVHTGKVVKGSFEAGSVVHFAVDEDRRAAIRRNHTATHLMHAVLRK 577 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS + LRFD H KP++ E K IE VN I N PV T++M++++A Sbjct: 578 VLGEHVKQAGSLVNEQRLRFDFNHFKPVSEEERKVIEAEVNAAIWANDPVETKLMSQDEA 637 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 +ASGA AL G KY D VRVVS + S+ LCGGTHVS+TG+I IVSE+ I AG Sbjct: 638 VASGAMALFGEKYGDEVRVVSAGF------STELCGGTHVSATGDIGPFRIVSEAGIAAG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKV----SQGNVVGRVEEIWEEYRKLQLIHA 775 +RRIEA+TG A L+ L+ A LKV + VV ++ + ++L + A Sbjct: 692 VRRIEAVTGSAAYQSLVADIHTLEEAAGHLKVRPFEAADAVVTLQGKLKDAEKELTSLRA 751 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGISKEK 834 K+ L ++DL + +VN + + EV K+++ MD + K++SGI++ G+ Sbjct: 752 KQSTGL-LDDL-IKQAVEVNGVKLLAVEVSGVKDMRDFMDKAKGKLKSGILVF-GMKNGP 808 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K ++ VT+DLL ++A ++ R A + GG GGG+P MA +GG +K QA+AGVA+ Sbjct: 809 KVQLIAGVTQDLLGSYHAGNIVREVAMIC-GGKGGGKPDMAMAGGTEPDKLKQALAGVAA 867 Query: 895 FL 896 + Sbjct: 868 LI 869 >gi|311105349|ref|YP_003978202.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8] gi|310760038|gb|ADP15487.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8] Length = 874 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/908 (44%), Positives = 557/908 (61%), Gaps = 53/908 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FF+ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y T+ Sbjct: 4 SEIRQQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLPAEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSEIF+ Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS EE G+RYIEIWNLVFMQFE+ LP+ +DTGMGLER+A V Sbjct: 184 DHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPRLPRPCVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ+ +NY+IDLF+HLI A+ + TG+K +N + +VI DH+R+ SFLI DG++P+NEG Sbjct: 244 LQDVHSNYEIDLFQHLIAAAARETGIKNLEDNSL--KVIADHIRACSFLIVDGVIPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG T+P L+P L EMG AYPEL + + L+ E+E Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGDAYPELAATADRVAQVLKQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RFG+TL+ G+ +LD L+++ K L+G F LYDT+G P+D+ DI R L +D+ Sbjct: 362 RFGETLEHGMRILDSALANVPKGGQLDGMTLFTLYDTYGFPVDLTADICREREL-DVDMA 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+E QR +ARA K+ L + T+F GY+ L Sbjct: 421 GFEVAMERQRDQARAAG-------KFKMAEGLSYEGADTRFEGYEKLE------------ 461 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 +GV V A+ G V++ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 462 --------LDGVK--VTALYVDGTQVQQVKAGQSAVVVLDATPFYAESGGQVGDTGLLEA 511 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG+R + D K G+F HH +E G L +L+ +D R + NHSATHL+H A Sbjct: 512 DGVRFAVADTLKIQAGVFGHHGELESGTLSVGDTLLARVDAVRRARTVRNHSATHLMHKA 571 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HV Q GS + PD RFD P+T+ ++ +E VN I N P V ++M Sbjct: 572 LRQVLGAHVQQRGSLVDPDKTRFDFAQDAPLTAEQIARVEAIVNAEILANQPTVAQVMAY 631 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DA+ GA AL G KY D VRV+ + + S LCGGTHVS TG+I L IVSE + Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVSRTGDIGLFKIVSEGGV 685 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 AG+RRIEAITG A + + Q+ L +A L+ + ++ R+ ++ E+ + L+ L Sbjct: 686 AAGVRRIEAITGDNALAWVQNQNALLTQVAGMLRSTPADLPARIAQVQEQVKSLEKDLEQ 745 Query: 775 AKRKLQLNV-EDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ++ KL + DL+ ++ + ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 746 SRNKLAASAGNDLATSAAVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLATG 805 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S + K SV+ VT DL R A DL A + GG GGGRP MA GG + AIA Sbjct: 806 SADGKISVVGGVTADLTGRVKAGDLVGFVAAQV-GGKGGGRPDMAMGGGTDLAALPAAIA 864 Query: 891 GVASFLKK 898 V ++ + Sbjct: 865 SVQKWVDE 872 >gi|293604526|ref|ZP_06686931.1| alanine--tRNA ligase [Achromobacter piechaudii ATCC 43553] gi|292817107|gb|EFF76183.1| alanine--tRNA ligase [Achromobacter piechaudii ATCC 43553] Length = 874 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/908 (44%), Positives = 559/908 (61%), Gaps = 53/908 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FF+ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y T+ Sbjct: 4 SEIRRQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLPAEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSEIFF Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFF 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS EE G+RYIEIWNLVFMQFE+ + LP+ +DTGMGLER+A V Sbjct: 184 DHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAEGNMPRLPRPCVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF+ LI A+ + TG+K NN + +VI DH+R+ SFLI DG++P+NEG Sbjct: 244 LQGVHSNYEIDLFQKLIHAAARETGVKDLENNSL--KVIADHIRACSFLIVDGVIPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG T+P L+P L EMG AYPEL + + L+ E+E Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELASMADRVAQVLKQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RFG+TL+ G+ +LD L+++ K +L+G F LYDT+G P+D+ DI R + ID+ Sbjct: 362 RFGETLEHGMRILDTALANVPKGGVLDGTTLFTLYDTYGFPVDLTADICRERDVE-IDMP 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F ++E QR +ARA K+ L + T+F GY+ L Sbjct: 421 GFEVSMERQRDQARAAG-------KFKMAEGLSYEGADTRFEGYEKL------------- 460 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 +L N V A+ G V++ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 461 ------ELDN---VKVTALYVDGTQVQQVQAGQNAVVVLDATPFYAESGGQVGDTGLLQA 511 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG+R + D K G+F HH ++E G L +L+ +D R + NHSATHL+H A Sbjct: 512 DGVRFAVADTLKIQNGVFGHHGVLESGSLSVGDTLLARVDAVRRARTVRNHSATHLMHKA 571 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HV Q GS + + RFD P+T+ ++ +E VN + N P V ++M Sbjct: 572 LRQVLGAHVQQRGSLVDAEKTRFDFAQDAPMTAEQIARVEAIVNAEVLANQPTVAQVMAY 631 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DA+ GA AL G KY D VRV+ + + S LCGGTHVS TG+I L IVSE + Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVSRTGDIGLFKIVSEGGV 685 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 AG+RRIEAITG A + + Q+ L +A L+ + +V R+ ++ E+ + L+ L Sbjct: 686 AAGVRRIEAITGDNALAWVQNQNALLTQIAGMLRSTPADVPARIAQVQEQIKALEKDLEQ 745 Query: 775 AKRKLQLNV-EDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ++ KL + DL+ ++ + ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 746 SRNKLAASAGNDLATSAAVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLATG 805 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S + K SV+ VT DL DR A DL A + GG GGGRP MA GG + AIA Sbjct: 806 SADGKISVVGGVTADLTDRIKAGDLVGFVASQV-GGKGGGRPDMAMGGGTDLAALPAAIA 864 Query: 891 GVASFLKK 898 GV ++ + Sbjct: 865 GVQKWVDE 872 >gi|262277414|ref|ZP_06055207.1| alanyl-tRNA synthetase [alpha proteobacterium HIMB114] gi|262224517|gb|EEY74976.1| alanyl-tRNA synthetase [alpha proteobacterium HIMB114] Length = 892 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/895 (45%), Positives = 577/895 (64%), Gaps = 53/895 (5%) Query: 8 RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKC 67 R TF FF+KN H+++ SSSLIP NDPTLMF+NSGMV FKN+FTG EK Y TT QKC Sbjct: 9 RETFKNFFKKNDHKVISSSSLIPQNDPTLMFSNSGMVQFKNVFTGVEKRDYNRATTSQKC 68 Query: 68 VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYI 127 VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+L+TK+F L + +L + Sbjct: 69 VRAGGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKEQAIAYAWELITKDFALPKNKLCV 128 Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187 TV+ ED+EA+ LWKKI+G S DKII+I T+DNFWSM ETGPCGPCSEIF+D GE + GG Sbjct: 129 TVFSEDQEAYDLWKKIAGFSEDKIIKIPTSDNFWSMGETGPCGPCSEIFYDHGEHLFGGP 188 Query: 188 PGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 PGS E+G+R+IEIWNLVFMQ+EQ +K +R LPK S+DTGMGLERMA VLQ +NY I Sbjct: 189 PGSKDEDGDRFIEIWNLVFMQYEQISKDKRVNLPKPSVDTGMGLERMAAVLQGTHDNYQI 248 Query: 247 DLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306 DLF+ L+ S +T + + I +HRVI DHLR+S FLIADG++P+NEGRGYVLRRIMR Sbjct: 249 DLFQKLVDLSADITKTRINNDTIPSHRVISDHLRASCFLIADGLMPSNEGRGYVLRRIMR 308 Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366 RAM +A LG + ++ ++ L EM S Y EL +AK LI+ET+ +E+E+F L G+ Sbjct: 309 RAMRHANTLGSKDHVLSKMIDHLIKEMSSEYNELDRAKDLIKETITNEEEKFQSMLSNGM 368 Query: 367 VLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426 ++ + + K+ L+G+VAFKLYDT+G PLD+ +D + +D FNQ +E+++ Sbjct: 369 KIIHDEKNKI-KNNTLSGEVAFKLYDTYGFPLDLTEDYFKPLKIK-VDTEKFNQLMEKRK 426 Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486 AR G GS + +KIWF LK+++G+T+F+GY + Sbjct: 427 QEARKSWKGSGSDSIDKIWFDLKDRHGSTEFVGYS-----------------------SE 463 Query: 487 GVSSIVKAIVQQ-GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 + V +IV Q GE + +A K++++ +QT FYAE+GGQ+GD+G + ++ D Sbjct: 464 KTEAKVNSIVNQDGEEILKAKEKDKIKIITNQTCFYAESGGQVGDSGIIKTETGTAEVED 523 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 QK +F+H V+ G + L I+ + R + NHSATHLLH AL LG+HV Sbjct: 524 TQKFFGSLFIHIGFVKEGYIEKNQDSYLEINLERRENIKSNHSATHLLHAALREELGNHV 583 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + PD LRFD ++SK I S + K I VN I +N V+TR+M+ E AI GA Sbjct: 584 AQRGSYVGPDRLRFDFSYSKQINSEQQKKINSRVNHFINKNDKVITRLMSPEKAIKEGAM 643 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY + VRVVS+ + + S LCGGTHV +TG+I I++ESSI +G+RRIEA Sbjct: 644 ALFGEKYGEEVRVVSMGKNNDKIFSLELCGGTHVENTGKIGQFSIINESSIASGVRRIEA 703 Query: 726 ITGQRARSHL----MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ- 780 + G +++L + + E LK + LK + ++ +++++ +Y+ ++++ Sbjct: 704 LRGDELKTYLENKNLSKQENLKK--NKLKFEE--IINQIKKLKGDYKNFSEYQNEKQIND 759 Query: 781 -LN-VEDLSCHKIAD--------------VNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LN + L I D + ++ I+ + SK+++ ++D K + I Sbjct: 760 ALNYLNKLRAKNILDDKNKNIITSNSKNGIEIINQILIGLSSKDIRGLVDQGTKTKDNTI 819 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 I ++ + +++K S+ + ++++L +R++A + A+ + LGG GGGGR AQ+GG Sbjct: 820 IFIISL-EDQKTSIGVGISQNLTNRYDAANFAKKISIYLGGKGGGGRKDFAQAGG 873 >gi|99036095|ref|ZP_01315128.1| hypothetical protein Wendoof_01000018 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 877 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/895 (44%), Positives = 561/895 (62%), Gaps = 51/895 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR F++FF N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K + + Sbjct: 3 LNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRAVS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE LD+ Sbjct: 63 SQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLDKN 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL ITVY D+EA+++W+KISG S+DKIIRITT+DNFWSM TGPCGPCSEIF+D G Sbjct: 123 RLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHG--- 179 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 + +EG+R +EIWNLVFM+F + + LPK IDTGMGLER+A V+Q +N Sbjct: 180 ----SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVHDN 235 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YDIDLF LI S++ G N + H++I DHLR+++FLIA+G+LP NEGR YVLRR Sbjct: 236 YDIDLFSALISKSQEYCG---RTENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVLRR 292 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRSEDERFGKT 361 ++RRA Y LLGY + L+ + P L SAY EL++AK LIE TL+SE+E F T Sbjct: 293 LIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYMGAELVRAKSLIETTLKSEEENFKDT 352 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L +G+ LL+ + L + L G+ AFKLYDT+G PLDI DIL + + D F+ A Sbjct: 353 LMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGFPLDITLDILKEKKI-NFDQKGFDDA 411 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + EQ+ RARA G G + E++WF L K+G T+F+GY+ S D K+L Sbjct: 412 MGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTKFVGYEFNEVS-----DAKILA---- 462 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + + E+++ A G+K+ ++ D+TPFY E+GGQ+GDTG I + Sbjct: 463 ------------IVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSDRSI 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 I + K +++H IV+ G + ++ +ID + R+ L NHSATHLLH L IL Sbjct: 511 IIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFTLRKIL 570 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV+Q GS + PD LRFD +H+ +T +L +ED VN +I +NL T+I + AI Sbjct: 571 GDHVTQKGSLVAPDRLRFDFSHNTQMTQDQLFWVEDMVNSLIRENLSASTKIQSMNQAID 630 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL G KY ++VRVV + S LCGGTHV TGEI L IV+ESS+ G+R Sbjct: 631 EGAMALFGEKYGNQVRVVKIG------DSRELCGGTHVEHTGEIGLFKIVTESSVAFGVR 684 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRKLQ 780 RIEA+TGQ A +++ + LK +A F+K + R+ + +E++K + I K Sbjct: 685 RIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEITSRLSILSQEHKKSETKIKNLYKKL 744 Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 ++ E++ +I +NF+SH +++ + ++ + LQ++ +I K+K +VLI Sbjct: 745 VSAENIKSTEINGINFISHTFTDIPANVIREFV--LQQQKPKTVIAFTATEKDK--TVLI 800 Query: 841 V-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + V++DL+++ +A +L ++ K GG +AQ+ G + NK D AI + S Sbjct: 801 IKVSKDLINKISAKELISIAVK----KNCGGNAELAQT-GCDSNKIDDAITAIYS 850 >gi|157829157|ref|YP_001495399.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933886|ref|YP_001650675.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. Iowa] gi|205830193|sp|B0BVK9|SYA_RICRO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830194|sp|A8GU16|SYA_RICRS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157801638|gb|ABV76891.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908973|gb|ABY73269.1| alanyl-tRNA synthetase [Rickettsia rickettsii str. Iowa] Length = 877 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/881 (46%), Positives = 561/881 (63%), Gaps = 39/881 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K Y T QK Sbjct: 9 VRSKFITYFKANNHTHVPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + +LY Sbjct: 69 SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 129 ATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ NNYD Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM Sbjct: 249 IDLFQEIINFTENIVKVKAEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF TL+RG Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAESFISSILEQEEIRFKATLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G+VAFKLYDT+G PLD+ +DIL R +A +D F + + Q Sbjct: 369 LKLLTEETETLTKGNKLSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQMLMQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + AR LG G T ++WF +KE++G+T+F+GY L + C+ + Sbjct: 428 KELARKSWLGSGESKTNQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N + + +K I Q ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTISAKDSEVEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I VH I+++G + + +ID + R+ L I+HSATH+LH L +LG HV Sbjct: 526 TLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDAI GA Sbjct: 586 TQKGSLVAPTYLRFDISHSKAVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAIKQGAM 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LCGGTHV TG+I I SES+I AG+RRIEA Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCGGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782 + G+ + + D LKS+ S K ++ ++ +V I E ++++ K L L+ Sbjct: 701 VCGEFVITLMRENDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLASLDLS 760 Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838 +E + +I + + + +D+K L+ + L KK++ I++ + GI K S+ Sbjct: 761 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858 >gi|42520697|ref|NP_966612.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila melanogaster] gi|48428514|sp|P61709|SYA_WOLPM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|42410437|gb|AAS14546.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 877 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/895 (44%), Positives = 561/895 (62%), Gaps = 51/895 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR F++FF N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K + + Sbjct: 3 LNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRAVS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE LD+ Sbjct: 63 SQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLDKN 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL ITVY D+EA+++W+KISG S+DKIIRITT+DNFWSM TGPCGPCSEIF+D G Sbjct: 123 RLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGSTGPCGPCSEIFYDHG--- 179 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 + +EG+R +EIWNLVFM+F + + LPK IDTGMGLER+A V+Q +N Sbjct: 180 ----SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVHDN 235 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YDIDLF LI S++ G N + H++I DHLR+++FLIA+G+LP NEGR YVLRR Sbjct: 236 YDIDLFSALISKSQEYCG---RTENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVLRR 292 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY--PELIQAKLLIEETLRSEDERFGKT 361 ++RRA Y LLGY + L+ + P L SAY EL++AK LIE TL+SE+E F T Sbjct: 293 LIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYMGAELVRAKSLIETTLKSEEENFKDT 352 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L +G+ LL+ + L + L G+ AFKLYDT+G PLDI D+L + + D F+ A Sbjct: 353 LMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGFPLDITLDVLKEKKI-NFDQKGFDDA 411 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + EQ+ RARA G G + E++WF L K+G T+F+GY+ S D K+L Sbjct: 412 MGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTKFVGYEFNEVS-----DAKILA---- 462 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + + E+++ A G+K+ ++ D+TPFY E+GGQ+GDTG I + Sbjct: 463 ------------IVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSDRSI 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 I + K +++H IV+ G + ++ +ID + R+ L NHSATHLLH L IL Sbjct: 511 IIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFTLRKIL 570 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV+Q GS + PD LRFD +H+ +T +L +ED VN +I +NL T+I + AI Sbjct: 571 GDHVTQKGSLVAPDRLRFDFSHNTQMTQDQLFWVEDMVNSLIRENLSASTKIQSMNQAID 630 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL G KY ++VRVV + S LCGGTHV TGEI L IV+ESS+ G+R Sbjct: 631 EGAMALFGEKYGNQVRVVKIG------DSRELCGGTHVEHTGEIGLFKIVTESSVAFGVR 684 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRKLQ 780 RIEA+TGQ A +++ + LK +A F+K + R+ + +E++K + I K Sbjct: 685 RIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEITSRLSILSQEHKKSETKIKNLYKKL 744 Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 ++ E++ +I +NF+SH +++ + ++ + LQ++ +I K+K +VLI Sbjct: 745 VSAENIKSTEINGINFISHTFTDIPANVIREFV--LQQQKPKTVIAFTATEKDK--TVLI 800 Query: 841 V-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + V++DL+++ +A +L ++ K GG +AQ+ G + NK D AI + S Sbjct: 801 IKVSKDLINKISAKELISIAVK----KNCGGNAELAQT-GCDSNKIDDAITAIYS 850 >gi|238651102|ref|YP_002916960.1| alanyl-tRNA synthetase [Rickettsia peacockii str. Rustic] gi|238625200|gb|ACR47906.1| alanyl-tRNA synthetase [Rickettsia peacockii str. Rustic] Length = 878 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/881 (46%), Positives = 560/881 (63%), Gaps = 39/881 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ F+ +F+ N H +P+SSLIP NDP+LMF NSGMV FKN+FTGQ K Y T QK Sbjct: 9 VRSKFITYFKANNHTHIPASSLIPHNDPSLMFVNSGMVQFKNVFTGQGKRPYNKAVTSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 +RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+AI AW+LLTKEF+L + +LY Sbjct: 69 SLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEQAIYYAWNLLTKEFELPKDKLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y D+EA WKKI+G D+II+I TNDNFWSM +TGPCGPCSEIF+D GE I GG Sbjct: 129 ATIYHTDDEAAAYWKKIAGFGDDRIIKIKTNDNFWSMGDTGPCGPCSEIFYDHGEQIYGG 188 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 LPG+ E+G+R+IEIWN+VFMQ+EQ +K L + SIDTGMGLERM VLQ NNYD Sbjct: 189 LPGTKDEDGDRFIEIWNMVFMQYEQIDKDTSIELSQKSIDTGMGLERMTAVLQHVNNNYD 248 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ +I +E + +K EG ++RVI DHLR+SSFLIADG++P+NEGRGYVLRRIM Sbjct: 249 IDLFQEIINFTENIVKVKAEGEAKFSYRVIADHLRASSFLIADGVIPSNEGRGYVLRRIM 308 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RR+M +A +LG EPLM LLP L MG+ YPEL +A+ I L E+ RF TL+RG Sbjct: 309 RRSMRHAHMLGSKEPLMYKLLPKLVDLMGNVYPELKRAENFISSILEQEEIRFKATLERG 368 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL L K L+G+VAFKLYDT+G PLD+ +DIL R +A +D F + + Q Sbjct: 369 LKLLTEETETLTKGNELSGEVAFKLYDTYGFPLDLTEDILKNRDIA-VDHKGFEEQMLMQ 427 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 + RAR LG G T ++WF +KE++G+T+F+GY L + C+ + Sbjct: 428 KERARKSWLGSGESKTNQLWFDIKEQHGSTEFLGYTL----------NEAKCKIIALIKN 477 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 N + + +K I Q ++ +QTPFY E+GGQ+GD G +++ D Sbjct: 478 NNLVNDIKEIDTQFLLIS------------NQTPFYGESGGQIGDIGTIFAKDSEVEVID 525 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 K I VH I+++G + + +ID + R+ L I+HSATH+LH L +LG HV Sbjct: 526 TLKYLGSIIVHKCILKKGQINVGENANFSIDIRYRQNLRIHHSATHILHAVLHEVLGKHV 585 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 Q GS + P LRFD++HSK +T+ E+ IED VN+II N V T +M EDA+ GA Sbjct: 586 IQKGSLVAPTYLRFDISHSKTVTNEEITLIEDKVNEIIRDNHEVTTTLMATEDAVKQGAT 645 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY+ VRVV + G S LC GTHV TG+I I SES+I AG+RRIEA Sbjct: 646 ALFGEKYDSEVRVVKM-----GETSLELCSGTHVRRTGDIGCFKITSESAIAAGVRRIEA 700 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLN 782 G+ + + +D LKS+ S K ++ ++ +V I E ++++ K L L+ Sbjct: 701 ACGEFVITLMREKDSLLKSIESSFKTNKNELITKVNNILERNKEVEKELEKTLLASLDLS 760 Query: 783 VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV--GISKEKKASV 838 +E + +I + + + +D+K L+ + L KK++ I++ + GI K S+ Sbjct: 761 IEQIEKQAAQITGIKLLYKKVGNIDNKILRQAAENLTKKVEDLIMVYIAEGIG---KLSI 817 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + V++ + D++NA +A+ + LGG GGGG+ +AQ+GG Sbjct: 818 TVAVSKAITDKYNADIIAKKLSLFLGGSGGGGQASLAQAGG 858 >gi|190571072|ref|YP_001975430.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019592|ref|ZP_03335398.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357344|emb|CAQ54775.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995014|gb|EEB55656.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 860 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/899 (45%), Positives = 572/899 (63%), Gaps = 56/899 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR F++FF N HE +PSS LIP +DPTLMFTN+GMV FKNIFTG +K + + Sbjct: 3 LNEIRERFIKFFVNNNHEQVPSSPLIPEHDPTLMFTNAGMVQFKNIFTGTQKTEMKRAVS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+RAGGKHNDL+NVG T+RHHTFFEMLGNFSFG YFKE AI+ AW +T+E LD+ Sbjct: 63 SQKCLRAGGKHNDLENVGYTSRHHTFFEMLGNFSFGDYFKETAIEFAWKFITEELSLDKN 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL ITVY D+EA+++W+KISG S DKIIRITT+DNFWSM TGPCGPCSEIF+D G Sbjct: 123 RLSITVYHTDDEAYEIWRKISGFSDDKIIRITTDDNFWSMGNTGPCGPCSEIFYDHGN-- 180 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 + E +R +EIWNLVFM+F + + LPK IDTGMGLER+A V+Q +N Sbjct: 181 -----SALHEDDRIVEIWNLVFMEFNKDEEGNLQKLPKKCIDTGMGLERIAAVMQNVHDN 235 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YDIDLF L+ S++ G N V H++I DHLR+++FLIA+G+LP NEGR YVLRR Sbjct: 236 YDIDLFSALVSKSQEYCG---NTENKVAHKIIADHLRAAAFLIAEGVLPGNEGRNYVLRR 292 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALC-----TEMGSAYPELIQAKLLIEETLRSEDERF 358 ++RRA Y LLGY + L+ + PAL MG AYPELI+AK LIE TL+SE+E F Sbjct: 293 LIRRAARYIHLLGYNDSLLNLVFPALIDGTSLAYMGDAYPELIRAKSLIETTLKSEEENF 352 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL +G+ LLD + L + L+G+ AFKLYDT+G PLDI DIL R + D F Sbjct: 353 KDTLMKGINLLDKFTADLKSGDTLSGESAFKLYDTYGFPLDITLDILKERKI-NFDQKGF 411 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + A++EQ+ RARA+ G G + E++WF+L +++G T+F+GY+ +++ K Sbjct: 412 DNAMKEQKERARANWTGSGEKSVEQVWFNLIDQFGKTEFVGYE--------RDEVK---- 459 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GD 537 ++++ I + E+++ A G+K+ ++ D+TPFY E+GGQ+GDTG I D Sbjct: 460 ---------DATVLAIISSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGNFIKSD 510 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G L + + K +++H IVE G +R ++ +I+ + R+ L NHSATHLLH AL Sbjct: 511 GSTLTVENTN-KINDLYLHRCIVESGSVRKGDTVTASINKKRRQDLRRNHSATHLLHFAL 569 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ILG HV+Q GS + P+ LRFD +H+KP+T +L S+ED VN +I +NL T++ + Sbjct: 570 RKILGDHVTQKGSLVAPNRLRFDFSHNKPVTQDQLSSVEDIVNSLIRENLSTSTKVQGMD 629 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +AI GA AL G KY D VRVV + S LCGGTHV TGEI L I +E S+ Sbjct: 630 EAIDEGAMALFGEKYGDNVRVVKIG------DSKELCGGTHVERTGEIGLFKIAAECSVA 683 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAK 776 + +RRIEA+TGQ A +++ + LK +A +K ++ R+ + +E ++ ++ I Sbjct: 684 SRVRRIEALTGQEAINYVRNNEISLKKVAECVKAPVNEIISRLSILSQERKEFEVKIKNL 743 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 K ++VE + +I +NF+SH + V ++ ALQ++ +I + I K+K Sbjct: 744 YKKLISVETVKSTEINGINFVSHTFNNVPGSIIREF--ALQQQKPKTVIAFMVIEKDK-- 799 Query: 837 SVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +VLIV V++DL ++ NA +L L GG +AQ+G N NK D AI + S Sbjct: 800 TVLIVKVSKDLTNKINAKEL----VSTLTRRDCGGNAELAQTGCDN-NKIDDAITAIHS 853 >gi|296282673|ref|ZP_06860671.1| alanyl-tRNA synthetase [Citromicrobium bathyomarinum JL354] Length = 886 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/890 (47%), Positives = 558/890 (62%), Gaps = 34/890 (3%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ + IR TFLEFF+ H+ + S+ L+P NDPTLMF N+GMVPFKN+FTG E P Sbjct: 1 MTSTNDIRRTFLEFFESRDHKRVASAPLVPHNDPTLMFVNAGMVPFKNVFTGLETPPAPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW LLT+EF L Sbjct: 61 AVSAQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIHNAWTLLTEEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RL TVY D+EAF LW+KI+GL D+IIRI T DNFW+M + GPCGPCSEIF+D G Sbjct: 121 DKNRLLATVYHTDDEAFDLWRKIAGLPEDRIIRIATKDNFWAMGDDGPCGPCSEIFWDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + IPGG PGS EE G+R++EIWNLVFMQ EQ+ + LP +IDTGMGLER+A VLQ Sbjct: 181 DHIPGGPPGSPEEDGDRFVEIWNLVFMQNEQRGGEIIGDLPNQNIDTGMGLERIAAVLQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD D F+ LI+++E I ++RVI DHLR++ FLIADG+LP+NEGRGY Sbjct: 241 VHNNYDTDTFRTLIESTEAQLHADATDYTIASYRVIADHLRATGFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM +A LLG PLM L+P L EMG AYPEL + + LIEETL E+ RF Sbjct: 301 VLRRIMRRAMRHAHLLGAKTPLMHRLVPTLVGEMGQAYPELGRGQALIEETLEREETRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LLD LGK + L+G+VAFKLYDT+G P D+ +D L +G+A +D F+ Sbjct: 361 ETLEKGLRLLDEATGSLGKGDQLDGEVAFKLYDTYGFPYDLTEDALRGQGIA-VDREGFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ QR ARA G G ++WFS+ E+ GAT+F GY +G Sbjct: 420 AAMARQREAARAAWKGSGQAADSEVWFSIAEREGATEFTGYSATQG-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY-AEAGGQLGDTGCAIGDG 538 V AIV+ G V A +G+ V ++ +QTPFY G DG Sbjct: 466 ---------EGQVVAIVKDGVEVTSAAAGEDVVLLTNQTPFYGESGGQSGDSGSITTHDG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +R+ + D K + H +E G +R + LT+D Q R ++ NHSATHLLH AL Sbjct: 517 LRIAVRDTGKPLGRLHTHQGKIEAGEVRVGDEVRLTVDEQRRNRIRANHSATHLLHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG V+Q GS + D LRFD ++ + I L IE +VN I N V TR+M +D Sbjct: 577 RRLGDQVTQKGSLVAEDYLRFDFSYPEKIDREGLDRIEQDVNSQIRGNSEVGTRLMTPDD 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+A+GA AL G KY D VRV+S+ + S LCGGTHV TG+I L I+ ESS+ + Sbjct: 637 AVAAGAMALFGEKYGDEVRVLSMGRDADADFSIELCGGTHVERTGDIGLFAIIGESSVSS 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776 G+RRIEA+TG A +L + L ++ L + V +++ + + + L +L AK Sbjct: 697 GVRRIEALTGNAASEYLRTRANALNEISGKLGATPDAAVAQLDALLAQRKTLERELADAK 756 Query: 777 RKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 R L L + +S I V F +I +D KEL+ ++DA ++++ SGI + + Sbjct: 757 RALALSGGGGDGPQVSDETINGVTFSGQVIEGLDPKELRPLLDAAKQRLGSGIAAICA-T 815 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + KA+ + VT+DL DRF+AV+L R LGG GGGGR MAQ GGP+ Sbjct: 816 NDGKAAFAVAVTDDLTDRFSAVELVRAGVAALGGKGGGGRADMAQGGGPD 865 >gi|317403428|gb|EFV83940.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans C54] Length = 874 Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/908 (44%), Positives = 553/908 (60%), Gaps = 53/908 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FF+ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y T+ Sbjct: 4 SEIRQQFLQFFKSKGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRSYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLPAEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ ++IIRI N DNFW MA+TGPCGPCSEIF+ Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS EE G+RYIEIWNLVFMQFE+ LP+ +DTGMGLER+A V Sbjct: 184 DHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPRLPRPCVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF++LI A+ + TG+K NN + +VI DH+R+ SFLI DG++P+NEG Sbjct: 244 LQHVHSNYEIDLFQNLIAAAARETGVKDLENNSL--KVIADHIRACSFLIVDGVIPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG T P L+P L EMG AYPEL + + L+ E+E Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTRPFFHRLVPDLVAEMGEAYPELAATAERVAQVLKQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RFG+TL+ G+ +LDG L+++ K L+G F LYDT+G P+D+ DI C +D+ Sbjct: 362 RFGETLEHGMRILDGALANVPKGGQLDGTTLFTLYDTYGFPVDLTADI-CREREVDVDMA 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+E QR +ARA K+ L + T+F GY+ L Sbjct: 421 GFEVAMERQRDQARAAG-------KFKMAEGLSYEGAETRFEGYEKL------------- 460 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 +L N V A+ G V++ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 461 ------ELDN---VKVTALYVDGTQVQQVQAGQSAVVVLDATPFYAESGGQVGDTGLLEA 511 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 G+R + D K G+F HH +E G L +++ +D R + NHSATHL+H A Sbjct: 512 AGVRFAVGDTLKIQSGVFGHHGTLEEGKLAVGDTVLARVDAVRRARTVRNHSATHLMHKA 571 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HV Q GS + PD RFD P+T+ ++ +E VN I N P V ++M Sbjct: 572 LRQVLGAHVQQRGSLVDPDKTRFDFAQDAPLTAEQIARVEAIVNAEILANQPTVAQVMAY 631 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IVSE + Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVGRTGDIGLFKIVSEGGV 685 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 AG+RRIEAITG A + + Q L +A L+ + ++ R+ ++ ++ ++L+ L Sbjct: 686 AAGVRRIEAITGDNALAWVQNQSALLAQVAGMLRSTPADLPARISQVQDQVKQLEKDLEQ 745 Query: 775 AKRKLQLNV-EDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ++ KL + DL+ ++ + ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 746 SRSKLAASAGNDLASSAAVEVKGIKLLAASIGDVDPKALRGMVDNLKDRLKPAVVLLATG 805 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S + K SV+ VT DL +R A DL A + GG GGGRP MA GG + AIA Sbjct: 806 SADGKISVVGGVTADLTNRIKAGDLVGFVASQV-GGKGGGRPDMAMGGGTDIAALPAAIA 864 Query: 891 GVASFLKK 898 V ++ + Sbjct: 865 SVQKWVDE 872 >gi|187478846|ref|YP_786870.1| alanyl-tRNA synthetase [Bordetella avium 197N] gi|123514444|sp|Q2KY72|SYA_BORA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|115423432|emb|CAJ49966.1| alanyl-tRNA synthetase [Bordetella avium 197N] Length = 873 Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/908 (44%), Positives = 554/908 (61%), Gaps = 54/908 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FFQ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+EK Y T+ Sbjct: 4 SEIRQKFLQFFQSKGHSIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKEKRPYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT + L + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWELLTTVYKLPVEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ ++IIRI N DNFW M +TGPCGPC+EIF+ Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS EE G+RYIEIWNLVFMQFE+ LPK +DTGMGLER+A V Sbjct: 184 DHGPDIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMTPLPKPCVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF+ LI A+ + TG++ +N + +VI DH+R+ SFLI DG++P+NEG Sbjct: 244 LQGVHSNYEIDLFQKLITAAARETGVQDLHDNSL--KVIADHIRACSFLIVDGVIPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG T+P L+P L +MG AYPEL + + L+ E+E Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKPFFYRLVPDLVAQMGEAYPELANMAERVGQVLKQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RFG+TL+ G+ +LD L+ + K +L+G+ F LYDT+G P+D+ DI C ID+ Sbjct: 362 RFGETLEHGMKILDVALAQVPKGGLLDGNTLFTLYDTYGFPVDLTADI-CREREVEIDMA 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+E QR +ARA K+ L + T+F GY+ L S Sbjct: 421 GFEAAMERQRDQARAAG-------KFKMAEGLNYEGAQTRFEGYEQLELS---------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V A+ G ++ +GQ+ VV D TPFYAE+GGQ+GDTG + Sbjct: 464 ------------GAKVTALYVDGTQTDQVRAGQQAVVVLDATPFYAESGGQVGDTGLLVA 511 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG+R + D K G+F HH ++E G+L+ +L+ +D R + NHSATHL+H A Sbjct: 512 DGLRFAVADTLKVQAGVFGHHGLLEEGVLKVGDTLLARVDAVRRARTVRNHSATHLMHKA 571 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HV Q GS + PD RFD H P+T+ ++ +E VN + N R+M Sbjct: 572 LREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQAAQARVMAY 631 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DA+ GA AL G KY D VRV+ + + S LCGGTHVS TG+I L IVSE + Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVSRTGDIGLFKIVSEGGV 685 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 AG+RR+EAITG A + Q+ L+ A L+ + R+ ++ ++ + L+ L Sbjct: 686 AAGVRRVEAITGDNALVWVQEQNALLQRAAGVLRSPVAELPERIAQVQDQVKALEKDLEQ 745 Query: 775 AKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A+ KL ++ D S +I V ++ +I++VD K L+ ++D L+ K++ I++L Sbjct: 746 ARAKLAASAGNDLADKSAVEIKGVKVLAAVINDVDPKALRGMVDNLKDKLKPAIVLLAA- 804 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S + K S++ VT D + A DL A + GG GGGRP MA GG + AIA Sbjct: 805 SADGKISLVGGVTADQTAKVKAGDLVGFVAAQV-GGKGGGRPDMAMGGGTDVAALPAAIA 863 Query: 891 GVASFLKK 898 V ++ + Sbjct: 864 SVQDWVNE 871 >gi|317493956|ref|ZP_07952373.1| alanyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918283|gb|EFV39625.1| alanyl-tRNA synthetase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 875 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/909 (44%), Positives = 578/909 (63%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFYHSKGHQIVESSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAFNIWADEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI A+ +VTG + + RVI DH+RS +FL++DG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIAATAKVTGATDLSSKSL--RVIADHIRSCAFLVSDGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + ++G E L+ L MG A EL + + ++E+ L+ Sbjct: 302 SNEGRGYVLRRIIRRAVRHGNMVGAKETFFYKLVAPLIEVMGPAADELKRQQSMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G PLD+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDDELSKLSGD-TLDGETAFRLYDTYGFPLDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D I F +A+EEQR RAR S G G+ + S+ GA++F GYD Sbjct: 420 VDEIGFERAMEEQRRRARESS-GFGAD-----YNSMIRVDGASKFSGYD----------- 462 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N S V A+ + G+ V+ +G++ VV ++TPFYAE+GGQ+GD G Sbjct: 463 ------------HNQQHSSVTALFRDGQAVDVLNAGEEGVVVLNETPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ +TD QK + I H V +G ++ S+ TID R ++ +NHSATHL Sbjct: 511 ELTAQGVSFVVTDTQKYGQAIG-HQGKVAQGSVKVGDSVEATIDEARRSRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HVSQ GS ++ LRFD +H + + +++ +ED VN I +NLP+ T Sbjct: 570 LHAALRQVLGDHVSQKGSLVSDRNLRFDFSHFEAMKPEQIRQVEDIVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ EDA A GA AL G KY++ VRV+S+ G S+ LCGGTH TG+I L I S Sbjct: 630 IMDLEDAKAKGAMALFGEKYDESVRVLSM-----GDFSTELCGGTHARQTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ AG+RRIEA+TG+ A + + + L+ AS +K +V ++ + ++ R+L+ Sbjct: 685 EAGTAAGVRRIEAVTGEGAIAVMHQDADALREAASLVKSDAHSVAEKIRAVMDKTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DV + ++S++D +K L++++D L+ ++ SG+++L Sbjct: 745 ELQQLKDQQAAQESASLSSKAVDVKGVKLLVSQLDNVEAKMLRTMVDDLKNQLGSGVVVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + E K S++ VT+DL D+ A +L + A+ + GG GGGRP MA +GG + Q Sbjct: 805 A-TTAEGKVSLVAGVTKDLTDKVKAGELIGMVAQQV-GGKGGGRPDMAMAGGSDATALPQ 862 Query: 888 AIAGVASFL 896 A+AGV +++ Sbjct: 863 ALAGVEAWV 871 >gi|33602167|ref|NP_889727.1| alanyl-tRNA synthetase [Bordetella bronchiseptica RB50] gi|41018190|sp|Q7WHL6|SYA_BORBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33576605|emb|CAE33683.1| alanyl-tRNA synthetase [Bordetella bronchiseptica RB50] Length = 874 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/906 (44%), Positives = 554/906 (61%), Gaps = 53/906 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FFQ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y+ T+ Sbjct: 4 SEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRLPAEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSEIF+ Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS EE G+RYIEIWNLVFMQFE+ LPK +DTGMGLER+A V Sbjct: 184 DHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF+ LI A+ + TG+K +N + +VI DH+R+ +FLI DGI+P+NEG Sbjct: 244 LQHVHSNYEIDLFQKLIAAAARETGVKDLADNSL--KVIADHIRACAFLIVDGIIPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG T+P L+P L EMG AYPEL Q + + LR E+E Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RFG+TL+ G+ +LDG L+ + K + L+G F LYDT+G P+D+ DI RG+ +D+ Sbjct: 362 RFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRERGVE-VDMA 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A++ QR +ARA K+ L + T+F GY+ L Sbjct: 421 GFEAAMQRQREQARAAG-------KFKMAEGLSYEGAETRFEGYESLE------------ 461 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 +GV V A+ +G VE+ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 462 --------LSGVK--VTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGLLEA 511 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 G+R + D K G+F HH +E G L+ +L+ +D R + NHSATHL+H A Sbjct: 512 GGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLMHKA 571 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HV Q GS + PD RFD H P+T+ ++ +E VN + N ++M Sbjct: 572 LREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKVMAY 631 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L +VSE + Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVRRTGDIGLFKVVSEGGV 685 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RRIEAITG A + + Q+ L+ A L+ + R+ ++ E+ + L +L Sbjct: 686 AAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIVQVQEQLKALEKELEQ 745 Query: 775 AKRKLQLNV-EDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A+ KL + DL+ +V ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 746 ARTKLAASAGNDLAATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLAAG 805 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S + K S++ VT DL R A DL A + GG GGGRP MA GG + A+A Sbjct: 806 SADGKISLVGGVTADLTGRIKAGDLVGFVAGQV-GGKGGGRPDMAMGGGTDLAALPAAVA 864 Query: 891 GVASFL 896 V ++ Sbjct: 865 SVQKWV 870 >gi|330813881|ref|YP_004358120.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063] gi|327486976|gb|AEA81381.1| alanyl-tRNA synthetase [Candidatus Pelagibacter sp. IMCC9063] Length = 900 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/909 (44%), Positives = 570/909 (62%), Gaps = 52/909 (5%) Query: 1 MSN--VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 MSN + +R TF +FF+ N H+++ SS L+P NDPTLMF NSGMV FKN+FTG E+ Y Sbjct: 1 MSNKTLQDVRKTFKDFFKANDHQIVDSSPLVPQNDPTLMFANSGMVQFKNVFTGLEQRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW L+TKE+ Sbjct: 61 KRATTAQKCVRAGGKHNDLENVGFTPRHHTFFEMLGNFSFGDYFKEEAINYAWQLITKEY 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L + +LY+TV+ ED+EA+ LW KI+G + D+II+I T+DNFWSM +TGPCGPCSEIF+D Sbjct: 121 SLPKDKLYVTVFSEDQEAYDLWHKITGFNEDRIIKIPTSDNFWSMGDTGPCGPCSEIFYD 180 Query: 179 QGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ + GGLPG+ E+G+R+IEIWNLVFMQ+EQ +K +R LPK S+DTGMGLERM VL Sbjct: 181 HGDHLFGGLPGTKDEDGDRFIEIWNLVFMQYEQVSKDKRINLPKPSVDTGMGLERMTAVL 240 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 Q +NY IDLFK +I +E + K N ++RVI DHLR+S+FLI+DG+LP+NEGR Sbjct: 241 QGTHDNYQIDLFKKIILDTESLFEQKLSEKNTASYRVIADHLRASAFLISDGVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRIMRRAM ++ +LG T+P++ +LP + M YP+L AK LI+ET+ +E+ER Sbjct: 301 GYVLRRIMRRAMRHSNVLGKTDPILYKVLPTIIELMKEEYPQLENAKDLIKETVVTEEER 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F L GL +L+ + + KDE L G VAFKLYDT+G P+D+ QD+L + + ID Sbjct: 361 FSSLLKNGLKILNDEVKKI-KDETLPGSVAFKLYDTYGFPVDLTQDVLKEKNIK-IDHDE 418 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSL-----KEKYGATQFIGYDLLRGSKFMKED 472 F + E+ + ARA G GS +KIWF + KEK T+F GY GS Sbjct: 419 FKKLREQSKVEARASWKGTGSVGIDKIWFEIVSGQNKEKLADTEFFGY----GS------ 468 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + S + +IV++ + E G ++F+QT FYAE+GGQ+ DTG Sbjct: 469 -------------DQIESKLLSIVKEKKASLEIREGDSASLIFNQTVFYAESGGQISDTG 515 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + +++D QK +VH +V++G L+ + +L ID + R ++ NHSATHL Sbjct: 516 TIESNEVLFEVSDTQKIFGTFYVHSGVVKKGTLKLGDNFILKIDKKRRDKIKCNHSATHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HVSQ GS + PD LRFD +HSKPI+ E+ + NVN ++ V T Sbjct: 576 LHAALREKLGKHVSQKGSYVGPDRLRFDFSHSKPISKQEIVELNKNVNAVVINGGEVKTT 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + AI GA AL G KY D VRVV++ + S LCGGTHV+ I I++ Sbjct: 636 LMTPKKAIEQGAMALFGEKYGDEVRVVTMGNFNNKTFSIELCGGTHVTELSTIDNFEIIN 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQD----EKLKSLASFLKVSQGNVV---GRVEEIWE 765 ESSI +G+RRIEA+ G +H + EK SL S +K + N+ G +E+ + Sbjct: 696 ESSIASGVRRIEALRGDELSTHKQSLNKLAKEKETSLNSQIKGLESNIKKLNGNLEDFKD 755 Query: 766 EYRKLQLI---------HAKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDA 815 +++L+ + K LQ + ++ + + + D+ I + K+L++++D Sbjct: 756 FSPEVKLVKLKSLYESLYKKNILQDSKKNIIKDYPLKDLTVRIQYIYGLSGKDLRTIVDD 815 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +K+I S + + K ++ + +T++L + +A A+ +K L G GGGGR A Sbjct: 816 NKKEIGSSAVFTFS-ELDNKLNIAVGITDELTNNLDASFFAKEISKFLKGKGGGGRKDFA 874 Query: 876 QSGG-PNGN 883 Q+GG P N Sbjct: 875 QAGGEPPSN 883 >gi|117923331|ref|YP_863948.1| alanyl-tRNA synthetase [Magnetococcus sp. MC-1] gi|205830136|sp|A0L3J9|SYA_MAGSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|117607087|gb|ABK42542.1| alanyl-tRNA synthetase [Magnetococcus sp. MC-1] Length = 878 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/890 (44%), Positives = 562/890 (63%), Gaps = 48/890 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR F+ FFQ++GH + SSSL+P NDPTL+FTN+GMV FK++F G+E+ Y Sbjct: 2 NGNEIRKRFVAFFQQHGHTHVESSSLVPRNDPTLLFTNAGMVQFKSLFLGEERRDYSRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+L W +T++ +D Sbjct: 62 SAQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIRLGWRFVTEDLGIDA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +RL +TVY ED+EA+ +W + GL ADK+IRI T DNFWSM +TGPCGPCSEIF+D G+ Sbjct: 122 QRLLVTVYSEDDEAYAIWTQQIGLPADKVIRIPTTDNFWSMGDTGPCGPCSEIFYDYGDT 181 Query: 183 IPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + GG PGS E+G+R++EIWNLVFMQ+++ + LPK SIDTG GLER+A+VLQ KT Sbjct: 182 VAGGPPGSEDEDGDRFVEIWNLVFMQYDRSSDGTLTPLPKPSIDTGAGLERLASVLQGKT 241 Query: 242 NNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NNYD DLF+ LI+A+ + G+ +V+ RVI DH+RS SFLIADG+LP+NEGRG Sbjct: 242 NNYDTDLFQPLIKAAAALAGVDDTTCSAEQLVSLRVIADHIRSVSFLIADGVLPSNEGRG 301 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRIMRR M + RLLG +P M L+ L MG YPEL + + + +E++RF Sbjct: 302 YVLRRIMRRGMRHGRLLGLEQPFMHKLVETLGALMGDTYPELTAQRKTLAMVIETEEKRF 361 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL GL L+ ++ L ++L+G F LYDT G PLD+ DIL R + G+D F Sbjct: 362 AATLGTGLKHLEEAVAGLRMGDVLDGKTLFTLYDTFGFPLDLTADILRDREI-GVDQEGF 420 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + ++EQR RARA G G + ++ L E+ GA++F+GY Sbjct: 421 SACMKEQRERARAAWSGSGEASLGALYHPLLERVGASEFLGY------------------ 462 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGD 537 + S+ V A+++ G VE +G + VV +QTPFY E+GGQ+GD G + + Sbjct: 463 -----VHESASASVVALIKNGAEVESLTAGDEGSVVCNQTPFYGESGGQVGDRGVIQLAN 517 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G R +TD QK + VHH + G + L +D R+ + ++HSATHL+HHAL Sbjct: 518 GARFTVTDTQKPLPDLIVHHGKMVTGTVHLGDHAELQVDGATRQAIRLHHSATHLMHHAL 577 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS ++ + LR D +H + ++ EL+++ED VN I N+ T +M + Sbjct: 578 RAVLGEHVKQAGSHVSAERLRLDFSHFQGMSEEELRAVEDRVNGAILSNVSQETAVMTPQ 637 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A+A+GA AL G KY D VRVV + S LCGGTHVS +G++ + +I+SES++ Sbjct: 638 EAVAAGAMALFGEKYGDEVRVVRIG------DSMELCGGTHVSRSGDMGIFHILSESAVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFL-----KVSQG--NVVGRVEEIWEEYRKL 770 AG+RR+EA+ G RAR+ G E LK+ A+ L K+++G ++G+ +E+ + KL Sbjct: 692 AGVRRLEAVCGGRARAIFRGDQEALKAAAALLKTQPNKLAEGIERLLGKQKELEKSLEKL 751 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 Q A ++ +E ++ + ++ + VD K L+ ++D ++ K+ SG+I+L Sbjct: 752 QSAQAGGMVEALLE--QAVEVGGIKLLAVEVKGVDGKALREMVDQVKDKLGSGVILLA-- 807 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 K S++ VT+DL R A DL +A ++ GG GGGRP MAQ GG Sbjct: 808 LGGDKVSLVAGVTKDLAGKRVKAGDLMAFAAAMV-GGKGGGRPDMAQGGG 856 >gi|157148231|ref|YP_001455550.1| alanyl-tRNA synthetase [Citrobacter koseri ATCC BAA-895] gi|205830024|sp|A8ANQ1|SYA_CITK8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157085436|gb|ABV15114.1| hypothetical protein CKO_04048 [Citrobacter koseri ATCC BAA-895] Length = 875 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/894 (45%), Positives = 568/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI+A +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRTLIEAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVVP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I GA++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAISAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFAFAVSDTQKYGQAIG-HIGTLSTGSLKVGDAVQADVDDARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL ILG+HV+Q GS + LRFD +H++ + +E++++ED VN I +NLPV T Sbjct: 570 MHAALRQILGTHVAQKGSLVNDKVLRFDFSHNEAMKPSEIRAVEDLVNAQIRRNLPVETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY+DRVRV+S+ G S+ LCGGTH S TG+I L IVS Sbjct: 630 IMDLEAAKAKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATLHAESDRLSDIAQLLKGDSQNLGEKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|33597425|ref|NP_885068.1| alanyl-tRNA synthetase [Bordetella parapertussis 12822] gi|41018188|sp|Q7W6N4|SYA_BORPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33573852|emb|CAE38162.1| alanyl-tRNA synthetase [Bordetella parapertussis] Length = 874 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/906 (44%), Positives = 554/906 (61%), Gaps = 53/906 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FFQ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y+ T+ Sbjct: 4 SEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYRLPAEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSEIF+ Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS EE G+RYIEIWNLVFMQFE+ LPK +DTGMGLER+A V Sbjct: 184 DHGPEIWGGPPGSLEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF+ LI A+ + TG+K +N + +VI DH+R+ +FLI DGI+P+NEG Sbjct: 244 LQHVHSNYEIDLFQKLIAAAARETGVKDLADNSL--KVIADHIRACAFLIVDGIIPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG T+P L+P L EMG AYPEL Q + + LR E++ Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKPFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQEEK 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RFG+TL+ G+ +LDG L+ + K + L+G F LYDT+G P+D+ DI RG+ +D+ Sbjct: 362 RFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADICRERGVE-VDMA 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A++ QR +ARA K+ L + T+F GY+ L Sbjct: 421 GFEAAMQRQREQARAAG-------KFKMAEGLSYEGAETRFEGYESLE------------ 461 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 +GV V A+ +G VE+ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 462 --------LSGVK--VTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGLLEA 511 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 G+R + D K G+F HH +E G L+ +L+ +D R + NHSATHL+H A Sbjct: 512 GGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLMHKA 571 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HV Q GS + PD RFD H P+T+ ++ +E VN + N ++M Sbjct: 572 LREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKVMAY 631 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L +VSE + Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVRRTGDIGLFKVVSEGGV 685 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RRIEAITG A + + Q+ L+ A L+ + R+ ++ E+ + L +L Sbjct: 686 AAGVRRIEAITGDNALAWVQDQNVLLQRAAGVLRAPAHELPERIAQVQEQLKALEKELEQ 745 Query: 775 AKRKLQLNV-EDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A+ KL + DL+ +V ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 746 ARTKLAASAGNDLAATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLAAG 805 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S + K S++ VT DL R A DL A + GG GGGRP MA GG + A+A Sbjct: 806 SADGKISLVGGVTADLTGRIKAGDLVGFVAGQV-GGKGGGRPDMAMGGGTDLAALPAAVA 864 Query: 891 GVASFL 896 V ++ Sbjct: 865 SVQKWV 870 >gi|308187884|ref|YP_003932015.1| Alanyl-tRNA synthetase [Pantoea vagans C9-1] gi|308058394|gb|ADO10566.1| Alanyl-tRNA synthetase [Pantoea vagans C9-1] Length = 875 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/912 (46%), Positives = 567/912 (62%), Gaps = 62/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GHE++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHEVVTSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTSEQWFSL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKERLWVTVYETDDEAYNIWADEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NY+IDLF+ LIQA QVTG N + RVI DH+RS +FLIADG++P Sbjct: 244 ISAVLQHVNSNYEIDLFQKLIQAVAQVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG+A EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLVEVMGAAGEELQRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 SE+++F +TL+RGL LLD L L D L+G++ F+LYDT G P D+ D+ R L Sbjct: 362 SEEDQFARTLERGLALLDEELEKLQGD-TLDGEIVFRLYDTFGFPADLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+E+QR RAR S G G+ + I A+ F GYD L Sbjct: 420 IDEAGFEQAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYDQL--------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 DL ++ VKA+ GE V+E +GQ VV D+TPFY E+GGQ+GDTG Sbjct: 465 ----------DL----AATVKALYVAGEAVDEVTAGQDAVVVLDETPFYGESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G LR L +D R ++ +NHSATHL Sbjct: 511 LLKGKNAEFSVQDTQKYGQAIG-HVGKLTAGQLRIGDRLEAQVDAARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + E++ +ED VN I +NLPV T Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPHEIRQVEDIVNAQIRRNLPVETE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A + GA AL G KY+ RVRV+++ G S LCGGTH + TG+I L I + Sbjct: 630 VMDLEAAKSKGAMALFGEKYDQRVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQA 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN----VVGRVEEIWEEYR 768 ES AGIRRIEAITG+ A + + Q +L+ LA +K + N V G V+ + + Sbjct: 685 ESGTAAGIRRIEAITGEGALAQVNAQSSQLQDLAQLVKANSSNLNEKVRGLVDYVRALEK 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825 +LQ + ++ Q + LS + I DV + ++SE V+ K L++++D L+ ++ S II Sbjct: 745 ELQQLRDQQAAQESAS-LSSNAI-DVKGVKLLVSELNNVEPKMLRTMVDDLKNQLGSAII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ E K S++ VT+DL DR A +L A L+ +V GG GGGRP MAQ+GG + + Sbjct: 803 VLATVA-EGKVSLIAGVTKDLTDRVKAGELIAGLAQQV--GGKGGGRPDMAQAGGTDADA 859 Query: 885 ADQAIAGVASFL 896 A+AGV S++ Sbjct: 860 LKGALAGVESWV 871 >gi|191171366|ref|ZP_03032915.1| alanyl-tRNA synthetase [Escherichia coli F11] gi|190908300|gb|EDV67890.1| alanyl-tRNA synthetase [Escherichia coli F11] Length = 876 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/909 (44%), Positives = 569/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + E+L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSERLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDATALPA 862 Query: 888 AIAGVASFL 896 A+A V ++ Sbjct: 863 ALASVKGWV 871 >gi|283786756|ref|YP_003366621.1| alanyl-tRNA synthetase [Citrobacter rodentium ICC168] gi|282950210|emb|CBG89846.1| alanyl-tRNA synthetase [Citrobacter rodentium ICC168] Length = 875 Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 567/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ +IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRARIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ + GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHVWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI A +VTG N + RVI DH+RS +FL+ADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIDAVAKVTGATDLSNKSL--RVIADHIRSCAFLVADGVVP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + L+E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVGPLIEVMGSAGEELKRQQALVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GY+ L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYEHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GDTG Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQQAVVVLDQTPFYAESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVSDTQKYGQAIG-HIGTLSAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H++ + +E++++ED VN I +NLPV T Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKLLRFDFSHNEAMKPSEIRAVEDLVNAQIRRNLPVETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 VMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAMATVHAQSDRLNEIAHLLKGDSQNLGDKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|218701187|ref|YP_002408816.1| alanyl-tRNA synthetase [Escherichia coli IAI39] gi|218371173|emb|CAR19004.1| alanyl-tRNA synthetase [Escherichia coli IAI39] Length = 876 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/909 (44%), Positives = 570/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLATGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + S E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKSEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAVLPA 862 Query: 888 AIAGVASFL 896 A+A V ++ Sbjct: 863 ALASVKGWV 871 >gi|33592894|ref|NP_880538.1| alanyl-tRNA synthetase [Bordetella pertussis Tohama I] gi|41018186|sp|Q7VXE1|SYA_BORPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33572542|emb|CAE42122.1| alanyl-tRNA synthetase [Bordetella pertussis Tohama I] Length = 874 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/906 (44%), Positives = 552/906 (60%), Gaps = 53/906 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FFQ GH ++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y+ T+ Sbjct: 4 SEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYKLPAEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSEIF+ Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS EE G+RYIEIWNLVFMQFE+ LPK +DTGMGLER+A V Sbjct: 184 DHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF+ LI A+ + TG+K +N + +VI DH+R+ +FLI DGI+P+NEG Sbjct: 244 LQHVHSNYEIDLFQKLIAAAARETGVKDLADNSL--KVIADHIRACAFLIVDGIIPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG T+ L+P L EMG AYPEL Q + + LR E+E Sbjct: 302 RGYVLRRIVRRALRHGYKLGQTKSFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RFG+TL+ G+ +LDG L+ + K + L+G F LYDT+G P+D+ DI C +D+ Sbjct: 362 RFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYGFPVDLTADI-CREREVEVDMA 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A++ QR +ARA K+ L + T+F GY+ L S Sbjct: 421 GFEAAMQRQREQARAAG-------KFKMAEGLSYEGAETRFEGYENLELS---------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 GV V A+ +G VE+ +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 464 ----------GVK--VTALYVEGTQVEQVSAGQDAVVVLDATPFYAESGGQVGDTGLLEA 511 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 G+R + D K G+F HH +E G L+ +L+ +D R + NHSATHL+H A Sbjct: 512 GGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVRNHSATHLMHKA 571 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HV Q GS + PD RFD H P+T+ ++ +E VN + N ++M Sbjct: 572 LREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKVMAY 631 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L +VSE + Sbjct: 632 DDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVRRTGDIGLFKVVSEGGV 685 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RRIEAITG A + + Q+ L+ A L+ + R+ ++ E+ + L +L Sbjct: 686 AAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRAPAHELPERIAQVQEQLKALEKELEQ 745 Query: 775 AKRKLQLNV-EDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A+ KL + DL + ++ + ++ I +VD K L+ ++D L+ +++ +++L Sbjct: 746 ARTKLAASAGNDLVATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVVLLAAG 805 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S + K S++ VT DL R A DL A + GG GGGRP MA GG + A+A Sbjct: 806 SADGKISLVGGVTADLTGRIKAGDLVGFVAGQV-GGKGGGRPDMAMGGGTDLAALPAAVA 864 Query: 891 GVASFL 896 V ++ Sbjct: 865 SVQKWV 870 >gi|304399190|ref|ZP_07381057.1| alanyl-tRNA synthetase [Pantoea sp. aB] gi|304353244|gb|EFM17624.1| alanyl-tRNA synthetase [Pantoea sp. aB] Length = 875 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/912 (46%), Positives = 565/912 (61%), Gaps = 62/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GHE++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHEVVTSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTSEQWFSL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKERLWVTVYETDDEAFDIWANEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NY+IDLF+ LIQA QVTG N + RVI DH+RS +FLIADG++P Sbjct: 244 ISAVLQHVNSNYEIDLFQKLIQAVAQVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG+A EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIEVMGAAGEELQRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 SE+++F +TL+RGL LLD L L D L+G++ F+LYDT G P D+ D+ R L Sbjct: 362 SEEDQFARTLERGLALLDEELEKLQGD-TLDGEIVFRLYDTFGFPADLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F QA+E+QR RAR S G G+ + I A+ F GYD L Sbjct: 420 IDEAGFEQAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYDQL--------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 DL ++ VKA+ GE V+E +GQ VV D+TPFY E+GGQ+GDTG Sbjct: 465 ----------DL----AATVKALYVAGEAVDEVTAGQDAVVVLDETPFYGESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G LR L +D R ++ +NHSATHL Sbjct: 511 LLKGKNAEFSVQDTQKYGQAIG-HVGKLTAGQLRIGDRLEAQVDAARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + E++ +ED VN I +NLPV T Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVETE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ + A + GA AL G KY+ RVRV+++ G S LCGGTH + TG+I L I + Sbjct: 630 VMDLDAAKSKGAMALFGEKYDQRVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQA 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN----VVGRVEEIWEEYR 768 ES AGIRRIEAITG+ A + + Q +L+ LA +K + N V G V+ + + Sbjct: 685 ESGTAAGIRRIEAITGEGALAQVNAQSSQLQDLAQLVKANSSNLNEKVRGLVDHVRALEK 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825 +LQ + ++ Q + LS + I DV + ++SE V+ K L++++D L+ ++ S II Sbjct: 745 ELQQLRDQQAAQESAS-LSSNAI-DVKGVKLLVSELNNVEPKMLRTMVDDLKNQLGSAII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ E K S++ VT+DL R A +L A L+ +V GG GGGRP MAQ+GG + Sbjct: 803 VLATVA-EGKVSLIAGVTKDLTGRVKAGELIAGLAQQV--GGKGGGRPDMAQAGGTDAKG 859 Query: 885 ADQAIAGVASFL 896 A+AGV S++ Sbjct: 860 LKGALAGVESWV 871 >gi|168230882|ref|ZP_02655940.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471872|ref|ZP_03077856.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458236|gb|EDX47075.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334599|gb|EDZ21363.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 876 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|30064057|ref|NP_838228.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T] gi|56480163|ref|NP_708505.2| alanyl-tRNA synthetase [Shigella flexneri 2a str. 301] gi|110806677|ref|YP_690197.1| alanyl-tRNA synthetase [Shigella flexneri 5 str. 8401] gi|44888327|sp|Q7UBU3|SYA_SHIFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123146773|sp|Q0T1C3|SYA_SHIF8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|30042313|gb|AAP18038.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T] gi|56383714|gb|AAN44212.2| alanyl-tRNA synthetase [Shigella flexneri 2a str. 301] gi|110616225|gb|ABF04892.1| alanyl-tRNA synthetase [Shigella flexneri 5 str. 8401] gi|281602067|gb|ADA75051.1| Alanyl-tRNA synthetase [Shigella flexneri 2002017] Length = 876 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ ID R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADIDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMNLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|58698333|ref|ZP_00373249.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila ananassae] gi|225630565|ref|YP_002727356.1| alanyl-tRNA synthetase [Wolbachia sp. wRi] gi|58535157|gb|EAL59240.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila ananassae] gi|225592546|gb|ACN95565.1| alanyl-tRNA synthetase [Wolbachia sp. wRi] Length = 880 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/898 (44%), Positives = 560/898 (62%), Gaps = 54/898 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR F++FF N HE + SS LIP +DPTLMFTN+GMV FKNIFTG +K + + Sbjct: 3 LNEIRERFIKFFVNNDHEQVSSSPLIPEHDPTLMFTNAGMVQFKNIFTGAQKTEMKRAVS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ +TKE LD+ Sbjct: 63 SQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWEFITKELSLDKN 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL ITVY D+EA+++W+KISG S+DKIIRITT+DNFWSM TGPCGPCSEIF+D G Sbjct: 123 RLSITVYHTDDEAYEIWRKISGFSSDKIIRITTDDNFWSMGNTGPCGPCSEIFYDHG--- 179 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 + +EG+R +EIWNLVFM+F + + LPK IDTGMGLER+A V+Q +N Sbjct: 180 ----SPNLQEGDRIVEIWNLVFMEFNKDEEGNLHKLPKKCIDTGMGLERIAAVMQNVHDN 235 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YDIDLF LI S++ G N + H++I DHLR+++FLIA+G+LP NEGR YVLRR Sbjct: 236 YDIDLFSALISKSQEYCG---RTENKIAHKIIADHLRAAAFLIAEGVLPGNEGRNYVLRR 292 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDERF 358 ++RRA Y LLGY + L+ + P L MG YPELI+AK LIE TL+SE+E F Sbjct: 293 LIRRAARYIHLLGYNDSLLHRVFPVLIDSTSSAYMGDIYPELIRAKSLIETTLKSEEENF 352 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL +G+ LL+ + L + L G+ AFKLYDT+G PLDI DIL + + D F Sbjct: 353 KDTLMKGISLLEKFTADLKSGDTLPGESAFKLYDTYGFPLDITLDILKEKKI-NFDQKGF 411 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + A+ EQ+ RARA G G + E++WF L +K+G T+F+GY+ + D K+L Sbjct: 412 DDAMGEQKERARAKWAGSGEKSVEQVWFDLIDKFGKTKFVGYEFNEVN-----DAKILA- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + E+++ A G+K+ ++ D+TPFY E+GGQ+GDTG I Sbjct: 466 ---------------IVSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSLIKSD 510 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + I + K +++H IV+ G + ++ +ID + R+ L NHSATHLLH L Sbjct: 511 RSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASIDKERRQTLRRNHSATHLLHFVLR 570 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV+Q GS + PD LRFD +H+ +T +L +ED VN +I +NL T+I + Sbjct: 571 KILGDHVTQKGSLVAPDKLRFDFSHNTQVTQDQLFLVEDMVNSLIRENLSTSTKIQSMNQ 630 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI GA AL G KY ++VRVV + S LCGGTHV TGEI L IV+ESS+ Sbjct: 631 AIDEGAMALFGEKYGNQVRVVKIG------DSRELCGGTHVEHTGEIGLFKIVTESSVAF 684 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKR 777 G+RRIEA+TGQ A +++ + LK +A F+K ++ R+ + +E ++ + I Sbjct: 685 GVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEIINRLNILNQERKESEAKIKNLY 744 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 K ++ E + +I +NF+SH + + + ++ + LQ++ II K+K + Sbjct: 745 KKLISAESIKSTEINGINFVSHAFTNIPANIIREFV--LQQQKPKTIIAFTATEKDK--T 800 Query: 838 VLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 VLI+ V++DL ++ +A +L ++ + GG +AQ+ G + NK D AI + S Sbjct: 801 VLIIKVSKDLANKISAKELVSIAVE----KNCGGNAELAQT-GCDSNKIDDAITAICS 853 >gi|170765841|ref|ZP_02900652.1| alanyl-tRNA synthetase [Escherichia albertii TW07627] gi|170124987|gb|EDS93918.1| alanyl-tRNA synthetase [Escherichia albertii TW07627] Length = 876 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + L+E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQALVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LSGKVTALFVDGKAVDVINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLNVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLGEIAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|324111325|gb|EGC05307.1| alanyl-tRNA synthetase [Escherichia fergusonii B253] Length = 876 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LSGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|198245112|ref|YP_002216798.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353771|ref|YP_002227572.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858091|ref|YP_002244742.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197939628|gb|ACH76961.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273552|emb|CAR38539.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206709894|emb|CAR34247.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326624557|gb|EGE30902.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628879|gb|EGE35222.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 876 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 567/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q + LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQAEGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|168235854|ref|ZP_02660912.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194737652|ref|YP_002115779.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713154|gb|ACF92375.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290777|gb|EDY30131.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 876 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HIGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELASIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|161615724|ref|YP_001589688.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205830199|sp|A9N0C1|SYA_SALPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|161365088|gb|ABX68856.1| hypothetical protein SPAB_03515 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 876 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFSVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|168262064|ref|ZP_02684037.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|200387922|ref|ZP_03214534.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605020|gb|EDZ03565.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205349249|gb|EDZ35880.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|322614354|gb|EFY11285.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621581|gb|EFY18434.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624442|gb|EFY21275.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628773|gb|EFY25556.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633500|gb|EFY30242.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635924|gb|EFY32632.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639632|gb|EFY36317.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646815|gb|EFY43318.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650583|gb|EFY46988.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654805|gb|EFY51124.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659025|gb|EFY55278.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664408|gb|EFY60602.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668343|gb|EFY64500.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673677|gb|EFY69778.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322681432|gb|EFY77464.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683834|gb|EFY79844.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193777|gb|EFZ78980.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200247|gb|EFZ85329.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203250|gb|EFZ88279.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205503|gb|EFZ90468.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212791|gb|EFZ97602.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216317|gb|EGA01044.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221065|gb|EGA05496.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226886|gb|EGA11068.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230830|gb|EGA14948.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234819|gb|EGA18905.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238858|gb|EGA22908.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241558|gb|EGA25589.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248295|gb|EGA32231.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251121|gb|EGA34994.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255840|gb|EGA39588.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263139|gb|EGA46677.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264356|gb|EGA47862.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271183|gb|EGA54611.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 876 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|56414779|ref|YP_151854.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363707|ref|YP_002143344.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|59798481|sp|Q5PF17|SYA_SALPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56129036|gb|AAV78542.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095184|emb|CAR60735.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 876 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+E +++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDETYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D + F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEVGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HIGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLVSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|16766133|ref|NP_461748.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|168245264|ref|ZP_02670196.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168464053|ref|ZP_02697970.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194443356|ref|YP_002042068.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450006|ref|YP_002046787.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197264802|ref|ZP_03164876.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|20532254|sp|Q8ZMK6|SYA_SALTY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|16421372|gb|AAL21707.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194402019|gb|ACF62241.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408310|gb|ACF68529.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633250|gb|EDX51664.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197243057|gb|EDY25677.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205335995|gb|EDZ22759.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261247963|emb|CBG25796.1| AlaRS [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994942|gb|ACY89827.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159387|emb|CBW18905.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913845|dbj|BAJ37819.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223380|gb|EFX48446.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131178|gb|ADX18608.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 876 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|238909593|ref|ZP_04653430.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 876 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|62181330|ref|YP_217747.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75481392|sp|Q57KU6|SYA_SALCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|62128963|gb|AAX66666.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715813|gb|EFZ07384.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 876 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|16761603|ref|NP_457220.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143087|ref|NP_806429.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052376|ref|ZP_03345254.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426121|ref|ZP_03358871.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213579902|ref|ZP_03361728.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213622611|ref|ZP_03375394.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213852307|ref|ZP_03381839.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289824467|ref|ZP_06544043.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|20532252|sp|Q8Z4D5|SYA_SALTI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|25293091|pir||AF0843 alanine-tRNA ligase (EC 6.1.1.7) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503904|emb|CAD05933.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138720|gb|AAO70289.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 876 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|110642817|ref|YP_670547.1| alanyl-tRNA synthetase [Escherichia coli 536] gi|123147797|sp|Q0TEI3|SYA_ECOL5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110344409|gb|ABG70646.1| alanyl-tRNA synthetase [Escherichia coli 536] Length = 876 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + E+L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSERLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|168820492|ref|ZP_02832492.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205342835|gb|EDZ29599.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087230|emb|CBY96995.1| Alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 876 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HIGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|91212055|ref|YP_542041.1| alanyl-tRNA synthetase [Escherichia coli UTI89] gi|117624928|ref|YP_853916.1| alanyl-tRNA synthetase [Escherichia coli APEC O1] gi|218559685|ref|YP_002392598.1| alanyl-tRNA synthetase [Escherichia coli S88] gi|237706683|ref|ZP_04537164.1| alanyl-tRNA synthetase [Escherichia sp. 3_2_53FAA] gi|122422735|sp|Q1R804|SYA_ECOUT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830084|sp|A1AEN7|SYA_ECOK1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91073629|gb|ABE08510.1| alanyl-tRNA synthetase [Escherichia coli UTI89] gi|115514052|gb|ABJ02127.1| alanyl-tRNA synthetase [Escherichia coli APEC O1] gi|218366454|emb|CAR04206.1| alanyl-tRNA synthetase [Escherichia coli S88] gi|226899723|gb|EEH85982.1| alanyl-tRNA synthetase [Escherichia sp. 3_2_53FAA] gi|294489971|gb|ADE88727.1| penicillin-binding protein 7 [Escherichia coli IHE3034] gi|307625735|gb|ADN70039.1| alanyl-tRNA synthetase [Escherichia coli UM146] gi|323951085|gb|EGB46961.1| alanyl-tRNA synthetase [Escherichia coli H252] gi|323957093|gb|EGB52818.1| alanyl-tRNA synthetase [Escherichia coli H263] Length = 876 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 564/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNESRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F+ A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|167550339|ref|ZP_02344096.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324713|gb|EDZ12552.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 876 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKLSEIREVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|283835574|ref|ZP_06355315.1| alanine--tRNA ligase [Citrobacter youngae ATCC 29220] gi|291068784|gb|EFE06893.1| alanine--tRNA ligase [Citrobacter youngae ATCC 29220] Length = 875 Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI++ +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRSLIESVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVVP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVEVMGSAGDELKRQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I GA++F GY+ L Sbjct: 420 VDEEGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----GASEFKGYEHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFAFAVSDTQKYGQAIG-HIGKLSAGSLKIGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H++ + AE++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKVLRFDFSHTEAMKPAEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY+D VRV+S+ G S+ LCGGTH S TG+I L IVS Sbjct: 630 IMDLEAAKAKGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIHTVHAQSDRLNDIAQLLKGDSQNIGDKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDINGVKLLVSELADVEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|204928130|ref|ZP_03219330.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322452|gb|EDZ07649.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 876 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV D+TPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDRTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|170019057|ref|YP_001724011.1| alanyl-tRNA synthetase [Escherichia coli ATCC 8739] gi|205830085|sp|B1IUY2|SYA_ECOLC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169753985|gb|ACA76684.1| alanyl-tRNA synthetase [Escherichia coli ATCC 8739] Length = 876 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 ANE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 ANENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|218547790|ref|YP_002381581.1| alanyl-tRNA synthetase [Escherichia fergusonii ATCC 35469] gi|218355331|emb|CAQ87938.1| alanyl-tRNA synthetase [Escherichia fergusonii ATCC 35469] Length = 876 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRKVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|331678669|ref|ZP_08379343.1| alanine--tRNA ligase [Escherichia coli H591] gi|331073499|gb|EGI44820.1| alanine--tRNA ligase [Escherichia coli H591] Length = 876 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQERANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|237729651|ref|ZP_04560132.1| alanyl-tRNA synthetase [Citrobacter sp. 30_2] gi|226908257|gb|EEH94175.1| alanyl-tRNA synthetase [Citrobacter sp. 30_2] Length = 875 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/894 (44%), Positives = 567/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI++ +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRSLIESVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVVP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + ++++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVDVMGSAGEELKRQQVMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I GA++F GY+ L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----GASEFKGYEHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFAFAVSDTQKYGQAIG-HIGKLSAGSLKIGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H++ + AE++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKLLRFDFSHTEAMKPAEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY+D VRV+S+ G S+ LCGGTH S TG+I L IVS Sbjct: 630 IMDLEAAKAKGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIQTVHAESDRLSDVAQLLKGDSQNIGDKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDINGVKLLVSELADVEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|157162143|ref|YP_001459461.1| alanyl-tRNA synthetase [Escherichia coli HS] gi|218690819|ref|YP_002399031.1| alanyl-tRNA synthetase [Escherichia coli ED1a] gi|227888232|ref|ZP_04006037.1| alanyl-tRNA synthetase [Escherichia coli 83972] gi|331658802|ref|ZP_08359744.1| alanine--tRNA ligase [Escherichia coli TA206] gi|205830083|sp|A8A3H4|SYA_ECOHS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157067823|gb|ABV07078.1| alanyl-tRNA synthetase [Escherichia coli HS] gi|218428383|emb|CAR09311.2| alanyl-tRNA synthetase [Escherichia coli ED1a] gi|227834501|gb|EEJ44967.1| alanyl-tRNA synthetase [Escherichia coli 83972] gi|307554671|gb|ADN47446.1| alanyl-tRNA synthetase [Escherichia coli ABU 83972] gi|331053384|gb|EGI25413.1| alanine--tRNA ligase [Escherichia coli TA206] Length = 876 Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|215488016|ref|YP_002330447.1| alanyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69] gi|215266088|emb|CAS10508.1| alanyl-tRNA synthetase [Escherichia coli O127:H6 str. E2348/69] Length = 876 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLNEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|170682603|ref|YP_001744844.1| alanyl-tRNA synthetase [Escherichia coli SMS-3-5] gi|205830086|sp|B1LQ15|SYA_ECOSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|170520321|gb|ACB18499.1| alanyl-tRNA synthetase [Escherichia coli SMS-3-5] Length = 876 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLATGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|331648414|ref|ZP_08349502.1| alanine--tRNA ligase [Escherichia coli M605] gi|281179700|dbj|BAI56030.1| alanyl-tRNA synthetase [Escherichia coli SE15] gi|331042161|gb|EGI14303.1| alanine--tRNA ligase [Escherichia coli M605] Length = 876 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 564/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F+ A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAVGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|74313262|ref|YP_311681.1| alanyl-tRNA synthetase [Shigella sonnei Ss046] gi|157158305|ref|YP_001464004.1| alanyl-tRNA synthetase [Escherichia coli E24377A] gi|191167095|ref|ZP_03028916.1| alanyl-tRNA synthetase [Escherichia coli B7A] gi|193065058|ref|ZP_03046133.1| alanyl-tRNA synthetase [Escherichia coli E22] gi|193069650|ref|ZP_03050602.1| alanyl-tRNA synthetase [Escherichia coli E110019] gi|194427866|ref|ZP_03060412.1| alanyl-tRNA synthetase [Escherichia coli B171] gi|209920136|ref|YP_002294220.1| alanyl-tRNA synthetase [Escherichia coli SE11] gi|218555239|ref|YP_002388152.1| alanyl-tRNA synthetase [Escherichia coli IAI1] gi|218696288|ref|YP_002403955.1| alanyl-tRNA synthetase [Escherichia coli 55989] gi|256019527|ref|ZP_05433392.1| alanyl-tRNA synthetase [Shigella sp. D9] gi|260845339|ref|YP_003223117.1| alanyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009] gi|260856802|ref|YP_003230693.1| alanyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368] gi|260869370|ref|YP_003235772.1| alanyl-tRNA synthetase [Escherichia coli O111:H- str. 11128] gi|293449010|ref|ZP_06663431.1| alanyl-tRNA synthetase [Escherichia coli B088] gi|307314418|ref|ZP_07594023.1| alanyl-tRNA synthetase [Escherichia coli W] gi|331669429|ref|ZP_08370275.1| alanine--tRNA ligase [Escherichia coli TA271] gi|123616373|sp|Q3YYG6|SYA_SHISS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830081|sp|A7ZQC5|SYA_ECO24 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|73856739|gb|AAZ89446.1| alanyl-tRNA synthetase [Shigella sonnei Ss046] gi|157080335|gb|ABV20043.1| alanyl-tRNA synthetase [Escherichia coli E24377A] gi|190902877|gb|EDV62605.1| alanyl-tRNA synthetase [Escherichia coli B7A] gi|192927355|gb|EDV81974.1| alanyl-tRNA synthetase [Escherichia coli E22] gi|192957013|gb|EDV87464.1| alanyl-tRNA synthetase [Escherichia coli E110019] gi|194414099|gb|EDX30375.1| alanyl-tRNA synthetase [Escherichia coli B171] gi|209913395|dbj|BAG78469.1| alanyl-tRNA synthase [Escherichia coli SE11] gi|218353020|emb|CAU98845.1| alanyl-tRNA synthetase [Escherichia coli 55989] gi|218362007|emb|CAQ99613.1| alanyl-tRNA synthetase [Escherichia coli IAI1] gi|257755451|dbj|BAI26953.1| alanyl-tRNA synthetase [Escherichia coli O26:H11 str. 11368] gi|257760486|dbj|BAI31983.1| alanyl-tRNA synthetase [Escherichia coli O103:H2 str. 12009] gi|257765726|dbj|BAI37221.1| alanyl-tRNA synthetase [Escherichia coli O111:H- str. 11128] gi|291322100|gb|EFE61529.1| alanyl-tRNA synthetase [Escherichia coli B088] gi|306905986|gb|EFN36507.1| alanyl-tRNA synthetase [Escherichia coli W] gi|315061973|gb|ADT76300.1| alanyl-tRNA synthetase [Escherichia coli W] gi|323180115|gb|EFZ65667.1| alanyl-tRNA synthetase [Escherichia coli 1180] gi|323377445|gb|ADX49713.1| alanyl-tRNA synthetase [Escherichia coli KO11] gi|323946425|gb|EGB42453.1| alanyl-tRNA synthetase [Escherichia coli H120] gi|324119946|gb|EGC13824.1| alanyl-tRNA synthetase [Escherichia coli E1167] gi|331063097|gb|EGI35010.1| alanine--tRNA ligase [Escherichia coli TA271] gi|332103001|gb|EGJ06347.1| alanyl-tRNA synthetase [Shigella sp. D9] Length = 876 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|322677738|gb|EFY73801.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] Length = 876 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRF+ +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFNFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|306812426|ref|ZP_07446624.1| alanyl-tRNA synthetase [Escherichia coli NC101] gi|305854464|gb|EFM54902.1| alanyl-tRNA synthetase [Escherichia coli NC101] gi|320194836|gb|EFW69465.1| Alanyl-tRNA synthetase [Escherichia coli WV_060327] Length = 876 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|15832808|ref|NP_311581.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai] gi|168749982|ref|ZP_02775004.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113] gi|168755438|ref|ZP_02780445.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401] gi|168762908|ref|ZP_02787915.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501] gi|168768784|ref|ZP_02793791.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486] gi|168774775|ref|ZP_02799782.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196] gi|168778675|ref|ZP_02803682.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076] gi|168800226|ref|ZP_02825233.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508] gi|194433071|ref|ZP_03065354.1| alanyl-tRNA synthetase [Shigella dysenteriae 1012] gi|195938445|ref|ZP_03083827.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024] gi|208805868|ref|ZP_03248205.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206] gi|208813761|ref|ZP_03255090.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045] gi|208818286|ref|ZP_03258606.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042] gi|209398791|ref|YP_002272160.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115] gi|217327497|ref|ZP_03443580.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588] gi|254794638|ref|YP_003079475.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359] gi|291284024|ref|YP_003500842.1| Alanyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615] gi|20532246|sp|Q8X3W8|SYA_ECO57 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|13363025|dbj|BAB36977.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai] gi|187769613|gb|EDU33457.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196] gi|188015823|gb|EDU53945.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113] gi|189003197|gb|EDU72183.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076] gi|189357241|gb|EDU75660.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401] gi|189362083|gb|EDU80502.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486] gi|189366853|gb|EDU85269.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501] gi|189377449|gb|EDU95865.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC508] gi|194418798|gb|EDX34884.1| alanyl-tRNA synthetase [Shigella dysenteriae 1012] gi|208725669|gb|EDZ75270.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206] gi|208735038|gb|EDZ83725.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045] gi|208738409|gb|EDZ86091.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042] gi|209160191|gb|ACI37624.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC4115] gi|217319864|gb|EEC28289.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588] gi|254594038|gb|ACT73399.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. TW14359] gi|290763897|gb|ADD57858.1| Alanyl-tRNA synthetase [Escherichia coli O55:H7 str. CB9615] gi|320640339|gb|EFX09878.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. G5101] gi|320645886|gb|EFX14867.1| alanyl-tRNA synthetase [Escherichia coli O157:H- str. 493-89] gi|320651186|gb|EFX19621.1| alanyl-tRNA synthetase [Escherichia coli O157:H- str. H 2687] gi|320656736|gb|EFX24624.1| alanyl-tRNA synthetase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662279|gb|EFX29676.1| alanyl-tRNA synthetase [Escherichia coli O55:H7 str. USDA 5905] gi|320667330|gb|EFX34288.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. LSU-61] Length = 876 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|293415946|ref|ZP_06658586.1| alanyl-tRNA synthetase [Escherichia coli B185] gi|331684309|ref|ZP_08384901.1| alanine--tRNA ligase [Escherichia coli H299] gi|291432135|gb|EFF05117.1| alanyl-tRNA synthetase [Escherichia coli B185] gi|331077924|gb|EGI49130.1| alanine--tRNA ligase [Escherichia coli H299] Length = 876 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|323966841|gb|EGB62270.1| alanyl-tRNA synthetase [Escherichia coli M863] Length = 876 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGVNFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|293412052|ref|ZP_06654775.1| alanyl-tRNA synthetase [Escherichia coli B354] gi|291468823|gb|EFF11314.1| alanyl-tRNA synthetase [Escherichia coli B354] Length = 876 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLNEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|331654174|ref|ZP_08355174.1| alanine--tRNA ligase [Escherichia coli M718] gi|331047556|gb|EGI19633.1| alanine--tRNA ligase [Escherichia coli M718] Length = 876 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVTQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|323935749|gb|EGB32063.1| alanyl-tRNA synthetase [Escherichia coli E1520] Length = 876 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYSSDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|218706191|ref|YP_002413710.1| alanyl-tRNA synthetase [Escherichia coli UMN026] gi|293406188|ref|ZP_06650114.1| alaS [Escherichia coli FVEC1412] gi|298381926|ref|ZP_06991523.1| alanyl-tRNA synthetase [Escherichia coli FVEC1302] gi|331664248|ref|ZP_08365154.1| alanine--tRNA ligase [Escherichia coli TA143] gi|218433288|emb|CAR14188.1| alanyl-tRNA synthetase [Escherichia coli UMN026] gi|284922633|emb|CBG35721.1| alanyl-tRNA synthetase [Escherichia coli 042] gi|291426194|gb|EFE99226.1| alaS [Escherichia coli FVEC1412] gi|298277066|gb|EFI18582.1| alanyl-tRNA synthetase [Escherichia coli FVEC1302] gi|331058179|gb|EGI30160.1| alanine--tRNA ligase [Escherichia coli TA143] Length = 876 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGTNFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|16130604|ref|NP_417177.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655] gi|89109484|ref|AP_003264.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. W3110] gi|170082274|ref|YP_001731594.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B] gi|188492036|ref|ZP_02999306.1| alanyl-tRNA synthetase [Escherichia coli 53638] gi|194439000|ref|ZP_03071084.1| alanyl-tRNA synthetase [Escherichia coli 101-1] gi|238901834|ref|YP_002927630.1| alanyl-tRNA synthetase [Escherichia coli BW2952] gi|254037736|ref|ZP_04871794.1| alanyl t-RNA synthetase [Escherichia sp. 1_1_43] gi|256024797|ref|ZP_05438662.1| alanyl-tRNA synthetase [Escherichia sp. 4_1_40B] gi|307139383|ref|ZP_07498739.1| alanyl-tRNA synthetase [Escherichia coli H736] gi|331643380|ref|ZP_08344511.1| alanine--tRNA ligase [Escherichia coli H736] gi|2507425|sp|P00957|SYA_ECOLI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830082|sp|B1XCM5|SYA_ECODH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|1789048|gb|AAC75739.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. MG1655] gi|1800083|dbj|BAA16559.1| alanyl-tRNA synthetase [Escherichia coli str. K12 substr. W3110] gi|169890109|gb|ACB03816.1| alanyl-tRNA synthetase [Escherichia coli str. K-12 substr. DH10B] gi|188487235|gb|EDU62338.1| alanyl-tRNA synthetase [Escherichia coli 53638] gi|194422121|gb|EDX38124.1| alanyl-tRNA synthetase [Escherichia coli 101-1] gi|226839360|gb|EEH71381.1| alanyl t-RNA synthetase [Escherichia sp. 1_1_43] gi|238859951|gb|ACR61949.1| alanyl-tRNA synthetase [Escherichia coli BW2952] gi|260448253|gb|ACX38675.1| alanyl-tRNA synthetase [Escherichia coli DH1] gi|309703056|emb|CBJ02388.1| alanyl-tRNA synthetase [Escherichia coli ETEC H10407] gi|315137304|dbj|BAJ44463.1| alanyl-tRNA synthetase [Escherichia coli DH1] gi|323941473|gb|EGB37656.1| alanyl-tRNA synthetase [Escherichia coli E482] gi|323960644|gb|EGB56270.1| alanyl-tRNA synthetase [Escherichia coli H489] gi|323971514|gb|EGB66748.1| alanyl-tRNA synthetase [Escherichia coli TA007] gi|331036851|gb|EGI09075.1| alanine--tRNA ligase [Escherichia coli H736] Length = 876 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|187734262|ref|YP_001881554.1| alanyl-tRNA synthetase [Shigella boydii CDC 3083-94] gi|205830210|sp|B2U049|SYA_SHIB3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|187431254|gb|ACD10528.1| alanyl-tRNA synthetase [Shigella boydii CDC 3083-94] Length = 876 Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|331674208|ref|ZP_08374968.1| alanine--tRNA ligase [Escherichia coli TA280] gi|222034390|emb|CAP77132.1| alanyl-tRNA synthetase [Escherichia coli LF82] gi|312947225|gb|ADR28052.1| alanyl-tRNA synthetase [Escherichia coli O83:H1 str. NRG 857C] gi|331068302|gb|EGI39697.1| alanine--tRNA ligase [Escherichia coli TA280] Length = 876 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|82778066|ref|YP_404415.1| alanyl-tRNA synthetase [Shigella dysenteriae Sd197] gi|123561812|sp|Q32CN1|SYA_SHIDS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|81242214|gb|ABB62924.1| alanyl-tRNA synthetase [Shigella dysenteriae Sd197] Length = 876 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQDAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|327394965|dbj|BAK12387.1| alanyl-tRNA synthetase AlaS [Pantoea ananatis AJ13355] Length = 875 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/912 (45%), Positives = 565/912 (61%), Gaps = 62/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F GQEK Y T Sbjct: 4 STAEIRQAFLDFFNSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQEKRDYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWELLTGEQWFKL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKERLWVTVYETDDEAYDIWANDIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NY+IDLF+ LI+A +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 ITAVLQHVNSNYEIDLFQTLIEAVAKVTGATDLNNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MG+A EL + + +E L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIQVMGAAGEELQRQQAQVENVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 SE+E+F KTL+RGL LLD L+ L D L+G+ F+LYDT G P D+ D+ R L Sbjct: 362 SEEEQFAKTLERGLALLDEELAKLQSD-TLDGETVFRLYDTFGFPADLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E+QR RAR S G G+ + I A+ F GY+ L Sbjct: 420 IDEAGFEKAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYEQL--------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 DLT + VKA+ GE V+ +GQ +V D+TPFY E+GGQ+GDTG Sbjct: 465 ----------DLT----ATVKALFVNGEAVDALSAGQDAVIVLDETPFYGESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + D QK + I H + G LR L +D R ++ +NHSATHL Sbjct: 511 ELKGNNALFSVQDTQKYGQAIG-HIGKLSSGQLRVGDRLEAVVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + E++ +ED VN I +NLPV TR Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVETR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A A GA AL G KY+ +VRV+++ G S LCGGTH + TG+I L I + Sbjct: 630 VMDLEAAKAKGAMALFGEKYDQQVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQA 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN----VVGRVEEIWEEYR 768 ES AGIRRIEAITG+ A + + Q +L+ +A +K + N V G V+ + + Sbjct: 685 ESGTAAGIRRIEAITGEAALAQVYAQSSQLQDIAQLVKANSSNLNEKVRGLVDHLRSLEK 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825 +LQ + ++ Q + + L H + DV + +++E+ D K L++++D L+ ++ S II Sbjct: 745 ELQQLRDQQAAQESAQ-LGNHAV-DVKGVKLLVTELSNTDPKMLRTMVDDLKNQLGSAII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K S++ VT+DL DR A +L A L+ KV GG GGGRP MAQ+GG + Sbjct: 803 VLATVA-DGKVSLIAGVTKDLTDRVKAGELIAELAPKV--GGKGGGRPDMAQAGGSDATA 859 Query: 885 ADQAIAGVASFL 896 A+AGV ++ Sbjct: 860 LKGALAGVEGWV 871 >gi|330908728|gb|EGH37242.1| alanyl-tRNA synthetase [Escherichia coli AA86] Length = 876 Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F+ A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKSVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAVGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|224584605|ref|YP_002638403.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469132|gb|ACN46962.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 876 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 565/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGAMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEVINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDATQKYGQAIG-HLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|323978695|gb|EGB73777.1| alanyl-tRNA synthetase [Escherichia coli TW10509] Length = 876 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGVNFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++S+ V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|168787948|ref|ZP_02812955.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869] gi|261225988|ref|ZP_05940269.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK2000] gi|261256754|ref|ZP_05949287.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. FRIK966] gi|189372228|gb|EDU90644.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC869] Length = 876 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED +N I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLMNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|197249925|ref|YP_002147723.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197213628|gb|ACH51025.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 876 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 565/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERKIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE + Q+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVEVINAEQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFTFAVDDTQKYGQAIG-HIGKLSAGALKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIRQVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLDAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE ++ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|15803211|ref|NP_289243.1| alanyl-tRNA synthetase [Escherichia coli O157:H7 EDL933] gi|12517136|gb|AAG57801.1|AE005498_2 alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EDL933] Length = 878 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/892 (45%), Positives = 562/892 (63%), Gaps = 56/892 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGG 854 >gi|253772448|ref|YP_003035279.1| alanyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162628|ref|YP_003045736.1| alanyl-tRNA synthetase [Escherichia coli B str. REL606] gi|242378254|emb|CAQ33029.1| alanyl-tRNA synthetase [Escherichia coli BL21(DE3)] gi|253323492|gb|ACT28094.1| alanyl-tRNA synthetase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974529|gb|ACT40200.1| alanyl-tRNA synthetase [Escherichia coli B str. REL606] gi|253978696|gb|ACT44366.1| alanyl-tRNA synthetase [Escherichia coli BL21(DE3)] Length = 876 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++S+ V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSKLSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|320173452|gb|EFW48651.1| Alanyl-tRNA synthetase [Shigella dysenteriae CDC 74-1112] Length = 876 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 563/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K + ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVEIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F+ A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFDAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|332173020|gb|AEE22274.1| alanyl-tRNA synthetase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 865 Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/906 (43%), Positives = 574/906 (63%), Gaps = 56/906 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL FF GH+ + SSSL+P +DPTL+FTN+GM FK++F G E+ Y T Sbjct: 4 STAQIRQAFLNFFADKGHQKVSSSSLVPSDDPTLLFTNAGMNQFKDVFLGTEQRKYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI AW LT+E L + Sbjct: 64 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIAYAWTFLTQELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +T+Y ED+EAF +W G+ +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 124 EKLLVTIYSEDDEAFDIWHNEIGVPKEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 183 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PG+ EE G+R+IEIWNLVFMQF +Q + LPK SIDTGMGLER++ +LQ Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNRQANGDMLPLPKPSIDTGMGLERISAILQNVH 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+ID+F++LI+A+ ++ G + + RV+ DH+RS SFLI+DG++P+NEGRGYVL Sbjct: 244 SNYEIDIFQNLIKATAEIVGTSSLEDKSL--RVVADHIRSCSFLISDGVMPSNEGRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG L+ AL TEMG AYPEL + + +IE+ LR E+E+F +T Sbjct: 302 RRIIRRAVRHGNKLGAKGVFFYKLVAALATEMGDAYPELNEQRAVIEKVLRVEEEQFSRT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG+++L+ LS L + +++ G++ FKLYDT+G P D+ D+ +GL+ ID F QA Sbjct: 362 LERGMLILNDALSEL-EGKVVPGELVFKLYDTYGFPADLTNDVAREKGLS-IDEEGFEQA 419 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + EQR RA+ S E++ L+ + F+GY+L + + +KE Sbjct: 420 MAEQRKRAQKAS-NFDLDYNEQLRSDLE-----SVFVGYELEQNTAQIKE---------- 463 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 I QG+ V E +G + ++ D++PFYAEAGGQ GDTG + D Sbjct: 464 -------------IFVQGQSVAEIAAGMEGTIILDESPFYAEAGGQAGDTGTLVKDSGGF 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEM----SLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ D K + AI +G +E+ S+ ++ R + +NHSATHL+H AL Sbjct: 511 EVQDTVK------LGKAIAHKGAALSELKVGDSVQANVNGARRHAIKLNHSATHLMHAAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++LG HV+Q GS + P+ LRFD +H + +T ++ ++E VN+ I N + T++M E Sbjct: 565 KSVLGEHVNQKGSLVQPERLRFDFSHYEAMTKEQVLAVETMVNEQILANHALQTKLMGLE 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A +GA AL G KY+D VRVVS+ G S LCGGTHV+ TG+I L I+SES I Sbjct: 625 QAKEAGAMALFGEKYDDDVRVVSM-----GDFSMELCGGTHVARTGDIGLFKIISESGIA 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+TG A ++ Q +L S+++ LK V RV ++ E+ + L+ K Sbjct: 680 SGVRRIEAVTGITALQYVQQQAFELTSISAVLKTDVTTVGERVLQLIEQTKTLEKEVTKL 739 Query: 778 KLQLNV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K ++ DL ++I V +S+ + ++S L++++D L+ +I SG+I+L G++ Sbjct: 740 KQEIANSAGSDLLSQINEINGVKVLSYHVQGIESGALRTMIDDLKNQIGSGVILL-GVAT 798 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +K S++ VT+DL + A +L A+ + GG GGGRP MAQ+GG D AIA V Sbjct: 799 GEKVSLIAGVTKDLTQKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGSQPENLDSAIASV 857 Query: 893 ASFLKK 898 +L++ Sbjct: 858 NEWLQE 863 >gi|82545227|ref|YP_409174.1| alanyl-tRNA synthetase [Shigella boydii Sb227] gi|123558824|sp|Q31X62|SYA_SHIBS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|81246638|gb|ABB67346.1| alanyl-tRNA synthetase [Shigella boydii Sb227] gi|320186483|gb|EFW61211.1| Alanyl-tRNA synthetase [Shigella flexneri CDC 796-83] gi|332091817|gb|EGI96895.1| alanyl-tRNA synthetase [Shigella boydii 3594-74] Length = 876 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/894 (45%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKDANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVSQ GS + LRFD +H++ + E++++ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|291618585|ref|YP_003521327.1| AlaS [Pantoea ananatis LMG 20103] gi|291153615|gb|ADD78199.1| AlaS [Pantoea ananatis LMG 20103] Length = 875 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/912 (45%), Positives = 563/912 (61%), Gaps = 62/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F GQEK Y T Sbjct: 4 STAEIRQAFLDFFNSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQEKRDYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWELLTGEQWFKL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKERLWVTVYETDDEAYDIWANDIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NY+IDLF+ LI+A +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 ITAVLQHVNSNYEIDLFQTLIEAVAKVTGATDLNNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MG+A EL + + +E L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIQVMGAAGEELQRQQAQVENVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 SE+E+F KTL+RGL LLD L+ L D L+G+ F+LYDT G P D+ D+ R L Sbjct: 362 SEEEQFAKTLERGLALLDEELAKLQGD-TLDGETVFRLYDTFGFPADLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E+QR RAR S G G+ + I A+ F GY+ L Sbjct: 420 IDEAGFEKAMEQQRQRAREAS-GFGADYSNVIRID-----AASSFKGYEQL--------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 DLT + VK + GE V+ +GQ +V D+TPFY E+GGQ+GDTG Sbjct: 465 ----------DLT----ATVKGLFVNGEAVDALSAGQDAVIVLDETPFYGESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + D QK + I H + G LR L +D R ++ +NHSATHL Sbjct: 511 ELKGNNALFSVQDTQKYGQAIG-HIGKLSSGQLRVGDCLEAVVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + E++ +ED VN I +NLPV TR Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLPVETR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A A GA AL G KY+ +VRV+++ G S LCGGTH + TG+I L I + Sbjct: 630 VMDLEAAKAKGAMALFGEKYDQQVRVLTM-----GDFSVELCGGTHAARTGDIGLFRIQA 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN----VVGRVEEIWEEYR 768 ES AGIRRIEAITG+ A + + Q +L+ +A +K + N V G V+ + + Sbjct: 685 ESGTAAGIRRIEAITGEAALAQVYAQSSQLQDIAQLVKANSSNLNEKVRGLVDHLRSLEK 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825 +LQ + + Q + + L H + DV + +++E+ D K L++++D L+ ++ S II Sbjct: 745 ELQQLRDQHAAQESAQ-LGNHAV-DVKGVKLLVTELSNTDPKMLRTMVDDLKNQLGSAII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K S++ VT+DL DR A +L A L+ KV GG GGGRP MAQ+GG + Sbjct: 803 VLATVA-DGKVSLIAGVTKDLTDRVKAGELIAELAPKV--GGKGGGRPDMAQAGGSDATA 859 Query: 885 ADQAIAGVASFL 896 A+AGV ++ Sbjct: 860 LKGALAGVEGWV 871 >gi|163856313|ref|YP_001630611.1| alanyl-tRNA synthetase [Bordetella petrii DSM 12804] gi|205829993|sp|A9IK31|SYA_BORPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|163260041|emb|CAP42342.1| alaS2 [Bordetella petrii] Length = 873 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/908 (43%), Positives = 553/908 (60%), Gaps = 54/908 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FFQ GH ++PS+SL+P NDPTL+FTNSGMV FK++FTG+E Y T+ Sbjct: 4 SEIRQKFLQFFQSKGHTIVPSASLVPGNDPTLLFTNSGMVQFKDVFTGKETRSYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ + L + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLPAEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED++A+ +W G+ ++IIRI N DNFW MA+TGPCGPCSEIF+ Sbjct: 124 LWVTVYQEDDQAYDIWATEVGVPRERIIRIGDNKGSRYASDNFWQMADTGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G + GG PGS EE G+RYIEIWNLVFMQFE+ LPK +DTGMGLER+A V Sbjct: 184 DHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMTPLPKPCVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 LQ +NY+IDLF++LI+A+ + TG+ E N++ +VI DH+R+ +FLI DG++P+NE Sbjct: 244 LQGVHSNYEIDLFQNLIRAAARETGVTNLEDNSL---KVIADHIRACAFLIVDGVIPSNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG T+P L+P L EMG AYPEL QA + + L+ E+ Sbjct: 301 GRGYVLRRIVRRALRHGYKLGQTKPFFYKLVPDLVAEMGQAYPELTQAAERVAQVLKQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERFG+TL+ G+ +LDG L+ + L+G F LYDT+G P+D+ DI R + +D+ Sbjct: 361 ERFGETLEHGMKILDGALAGVPAGGQLDGTTLFTLYDTYGFPVDLTADICRERNVE-VDM 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ A+ QR +ARA K+ L + T+F GY+ L Sbjct: 420 AGFDAAMARQRDQARAAG-------KFKMAEGLSYEGADTRFEGYEKLE----------- 461 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +GV V A+ G VE +GQ VV D TPFYAE+GGQ+GDTG Sbjct: 462 ---------LDGVK--VAALYVDGTQVERVQAGQHAVVVLDATPFYAESGGQVGDTGLLE 510 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G R + D K G+F HH ++E G L +L+ +D R + NHSATHL+H Sbjct: 511 SGGARFAVADTLKIQAGVFGHHGVLESGSLAVGDTLLARVDAVRRARTVRNHSATHLMHK 570 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV Q GS + PD RFD H P+++ ++ +E VN + N P R+M Sbjct: 571 ALRQVLGAHVQQRGSLVDPDKTRFDFAHDAPLSAEQIAQVEAIVNAEVLANQPTQARVMA 630 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +DA+ GA AL G KY D VRV+ + + S LCGGTHVS TG+I L IV+E Sbjct: 631 YDDAVKGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVSRTGDIGLFKIVAEGG 684 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773 + AG+RR+EAITG A + + Q+ L A L+ + ++ R+ ++ E+ R L+ L Sbjct: 685 VAAGVRRVEAITGDNALAWVQNQNALLLRAAGMLRTTPADLPERLAQVQEQLRTLEKDLE 744 Query: 774 HAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A+ KL + DL+ ++ V ++ + ++D K L+ ++D L+ +++S +++L Sbjct: 745 QARGKLAASAGNDLAAKAAEVKGVKVLAASLGDIDPKALRGMVDNLKDRLKSAVVLLASA 804 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K S++ VT DL R A DL A + GG GGGRP MA GG + A+A Sbjct: 805 GGDGKISLVGGVTADLTGRVKAGDLVGFVAGQV-GGKGGGRPDMAMGGGNDAQALPAAVA 863 Query: 891 GVASFLKK 898 V ++ + Sbjct: 864 SVQGWVDE 871 >gi|317049269|ref|YP_004116917.1| alanyl-tRNA synthetase [Pantoea sp. At-9b] gi|316950886|gb|ADU70361.1| alanyl-tRNA synthetase [Pantoea sp. At-9b] Length = 875 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/910 (45%), Positives = 557/910 (61%), Gaps = 58/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRDYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT E F L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIAYAWELLTGEQWFKL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKDRLWVTVYETDDEAYDIWANDIGIPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMQPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF LI++ VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYEIDLFAKLIKSVADVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA +L + + +E L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDAFFYKLVAPLIEVMGSAGEDLQRQQAQVENVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F KTL+RGL LLD L+ L D L+G+ F+LYDT G P+D+ D+ R L Sbjct: 362 AEEEQFAKTLERGLALLDEELAKLQGD-TLDGETVFRLYDTFGFPVDLTADVCRERDLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+E+QR RAR S G G+ I A+ F GYD L Sbjct: 420 IDEAGFEVAMEQQRQRAREAS-GFGADYNNVIRID-----SASAFKGYDQL--------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++S V+A+ G+ V+ +GQ VV D+TPFY E+GGQ+GDTG Sbjct: 465 --------------ALASTVQALFVDGQQVDHVSAGQDAVVVLDETPFYGESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + D QK + I H + +G LR L +D + R ++ +NHSATHL Sbjct: 511 VLAGNNAEFSVQDTQKYGQAIG-HIGKLTQGQLRVGDRLNAQVDEERRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + E++ +ED VN I +NL V T Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDKYLRFDFSHFEAMKPQEIRQVEDIVNAQIRRNLAVETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY+ RVRV+S+ G S+ LCGGTH + TG+I L I S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDQRVRVLSM-----GDFSTELCGGTHAARTGDIGLFRIQS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + Q +L +A +K + N+ +V + + R L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGALAQVNAQSHQLHDIAQLVKANSSNLNEKVRGLVDHVRALEK 744 Query: 773 -IHAKRKLQLNVEDLS-CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + R Q E S K DV ++SE V+ K L+++MD L+ ++ S II+L Sbjct: 745 ELQQLRDQQAAQESASLSSKAIDVKGTKLLVSELSNVEPKMLRTMMDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++ E K S++ VT+DL DR A +L L+A+V GG GGGRP MAQ+GG N Sbjct: 805 ATVA-EGKVSLIAGVTKDLTDRVKAGELVGELAAQV--GGKGGGRPDMAQAGGTNPQALA 861 Query: 887 QAIAGVASFL 896 A+AGV ++ Sbjct: 862 GALAGVQDWV 871 >gi|254489976|ref|ZP_05103171.1| alanyl-tRNA synthetase [Methylophaga thiooxidans DMS010] gi|224465061|gb|EEF81315.1| alanyl-tRNA synthetase [Methylophaga thiooxydans DMS010] Length = 858 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/893 (45%), Positives = 547/893 (61%), Gaps = 49/893 (5%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 FL+FF GHE++ SS L+P NDPTL+FTN+GMV FK F GQE Y T Q+CVRA Sbjct: 2 FLDFFASKGHEVVASSPLVPANDPTLLFTNAGMVQFKETFLGQETRKYTRAVTTQRCVRA 61 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130 GGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ L +L+ITV+ Sbjct: 62 GGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTETLALPPEKLWITVF 121 Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190 +ED+EA +W K G+SAD+ RI DNFWSM +TGPCGPCSEIF+D GE I GG PG+ Sbjct: 122 EEDDEAADIWLKEIGVSADRFSRIGAKDNFWSMGDTGPCGPCSEIFYDHGEDIAGGPPGT 181 Query: 191 SEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLF 249 EE G+RYIEIWNLVFMQF++ LPK S+DTGMGLER+A VLQ NNY+IDLF Sbjct: 182 PEEDGDRYIEIWNLVFMQFDRSADGTLTPLPKPSVDTGMGLERLAAVLQHVHNNYEIDLF 241 Query: 250 KHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309 +HLI+A + ++G + N + RVI DH+RS SF+IADG+ P+NEGRGYVLRRI+RRA+ Sbjct: 242 QHLIEAIQALSGTEDSSN--FSLRVIADHIRSCSFMIADGVHPSNEGRGYVLRRIIRRAI 299 Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369 + LG E L+ L EMG A+PEL QA+ L+E+ L E+ RF TLD GL +L Sbjct: 300 RHGHKLGLKEAFFHKLVQPLVNEMGDAFPELKQAQALVEKALLQEENRFADTLDNGLRIL 359 Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429 D + +G EI G+ F LYDT+G P+D+ DI RGL IDI F +A+E QR+RA Sbjct: 360 DQAIEDMGDKEI-PGETVFLLYDTYGFPIDLTADIARERGLT-IDIAGFERAMEAQRTRA 417 Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489 R+ S G G +E+I G T F GY + + Sbjct: 418 RSASQFAG-GLSEQIAID-----GETAFCGYSQTQ-----------------------ET 448 Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549 + AI+ GE V++ +GQ+ +V D TPFYAE+GGQ+GD G D ++D +K+ Sbjct: 449 GTITAIIADGEHVDQLEAGQEGVLVLDHTPFYAESGGQVGDHGEITSDNASFTVSDTRKQ 508 Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609 + F H E G S+ ID NR+ ++NHSATHLLH AL +LG HV Q G Sbjct: 509 GKA-FTHIGRCEHGQFHVGQSVTAQIDESNRQATALNHSATHLLHAALRNVLGDHVMQKG 567 Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669 S + P LRFD +H +P+T +L IE VN I N PV T++M E+A SGA AL G Sbjct: 568 SLVDPQRLRFDFSHFEPVTPDQLHDIERMVNQQIRLNHPVDTKLMAIEEAKKSGAMALFG 627 Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729 KY+D VRV+S+ G S LCGGTHV TG+I LL I +E+ I +G+RRIEA+TG Sbjct: 628 EKYDDEVRVLSM-----GDFSIELCGGTHVQHTGDIGLLKITAEAGIASGVRRIEAVTGD 682 Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLS 787 +A ++ L ++ LK NV + + + R+L +L K KL + D Sbjct: 683 KALDYIDTTQSTLNQVSDLLKAKPDNVQDKAALLVQRSRELEKELESLKAKLASSAGDDL 742 Query: 788 CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844 + + ++N + + S + D K L+ +D L+ K+ + I+L + K++K +++ VT+ Sbjct: 743 ANSVQEINGIKVLASSLEGADGKALREAVDQLKNKLGTAAIVLTAV-KDEKITIIAGVTK 801 Query: 845 DLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 D+ D+ A DL ++++V GG GGGRP MAQ GG A+A V ++ Sbjct: 802 DITDKIRAGDLVGHVASQV--GGKGGGRPDMAQGGGNEPQNLAAALASVTDWV 852 >gi|329296669|ref|ZP_08254005.1| alanyl-tRNA synthetase [Plautia stali symbiont] Length = 875 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/908 (45%), Positives = 554/908 (61%), Gaps = 58/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GMV FK++F GQ+K Y TT Sbjct: 6 AEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMVQFKDVFLGQDKRDYSRATTS 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT E F L + Sbjct: 66 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAYAWELLTGEQWFKLPK 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL++TVY+ D+EAF++W G+ ++IIRI N DNFW M +TGPCGPC+EI Sbjct: 126 ERLWVTVYETDDEAFEIWANDIGVPRERIIRIGDNKGGAYASDNFWQMGDTGPCGPCTEI 185 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER+A Sbjct: 186 FYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMQPLPKPSVDTGMGLERIA 245 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY IDLF LI A QVTG N + RVI DH+RS +FLIADG++P+N Sbjct: 246 AVLQHVYSNYKIDLFAKLINAVAQVTGATDLNNKSL--RVIADHIRSCAFLIADGVIPSN 303 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 E RGYVLRRI+RRA+ + +LG E L+ L MG+A +L + + +E L++E Sbjct: 304 ENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIEVMGAAGEDLKRQQKHVENALKNE 363 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL+RGL LLD L+ L K + L+G+ F+LYDT G P D+ D+ R L ID Sbjct: 364 EEQFAKTLERGLALLDDELAKL-KGDTLDGETVFRLYDTFGFPADLTADVCRERNLK-ID 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+E+QR RAR S G G+ I F TQF GYD L Sbjct: 422 EAGFEAAMEQQRQRAREAS-GFGTDYNTVIRFDT-----PTQFKGYDHL----------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + V+A+ G+ VE+ +GQ V+ DQTPFY E+GGQ+GDTG Sbjct: 465 ------------SLEATVQALFVDGQQVEQVAAGQDAVVILDQTPFYGESGGQVGDTGVL 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + D QK + F H + +G LR L +D R ++ +NHSATHL+H Sbjct: 513 TGQNAEFSVQDTQKYGKA-FGHIGKLRQGQLRVGDRLQAQVDEVRRSRIILNHSATHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS LRFD +H + + +++++ED VN I +NLP+ T +M Sbjct: 572 EALRKVLGDHVGQKGSLNNDKYLRFDFSHGEAMKPQQIRAVEDIVNAQIRRNLPITTNVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A A GA AL G KY+ RVRVVS+ G +S LCGGTH + TG+I L I E+ Sbjct: 632 DLEEAKALGATALFGEKYDQRVRVVSM-----GEYSIELCGGTHAARTGDIGLFRIQGEA 686 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-I 773 AGIRRIEA+TG+ A + L Q ++L +A +K + + +V + E R L+ + Sbjct: 687 GTAAGIRRIEAVTGEAAIAQLHAQSDQLTDIAQVVKANHSYLNEKVRGLVENVRALEKEL 746 Query: 774 HAKRKLQLNVEDLS-CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVG 829 R Q E S K +V ++SE V+ K L++++D L+ ++ S +I+L Sbjct: 747 QQLRDQQAAQESASLSSKAVEVKGAKLLVSELSNVEPKMLRTMVDDLKNQLGSAVIVLAT 806 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ E K S++ VT+DL DR A +L L+A+V GG GGGRP +AQ+GG + A Sbjct: 807 VA-EGKVSLIAGVTKDLTDRVKAGELIGELAAQV--GGKGGGRPDLAQAGGTDAQALSGA 863 Query: 889 IAGVASFL 896 + V ++ Sbjct: 864 LVSVPEWV 871 >gi|205830246|sp|A8GA09|SYA_SERP5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 875 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/909 (44%), Positives = 568/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EAF +W++ G+ A++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAFDIWQQQIGVPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF LI A +VTG N + RVI DH+RS +FL++DG+ P Sbjct: 244 IAAVLQHVNSNYEIDLFSKLIAAVAKVTGATDLDNKSL--RVIADHIRSCAFLVSDGVTP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG + L+ L MG A EL + + L+E+ L+ Sbjct: 302 SNEGRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQSLVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+++F +TL+RGL LLD L++L D L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 362 TEEDQFARTLERGLTLLDEELANLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ + S+ GA+QF GYD E Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSMIRVDGASQFSGYD--------HEQ 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ S V A+ + G+ V E +G++ VV D+TPFY E+GGQ+GD G Sbjct: 466 QQ---------------STVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +++D QK + I H + G L+ + ID R ++ +NHSATHL Sbjct: 511 VLKAANADFEVSDTQKYGQAIG-HQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + LRFD +H + + +++++ED VN I +NLPV T Sbjct: 570 LHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRTVEDLVNQQIRRNLPVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA GA AL G KY+D VRV+++ G S+ LCGGTH S TG+I L I+S Sbjct: 630 VMALDDAKGKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG A + L Q++ L+ +A +K N+ +V + + R L+ Sbjct: 685 ESGTAAGIRRIEAVTGDGAIATLHQQNDLLQDVAHLVKGDSNNLTDKVRAVLDRTRALEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K VN + ++S++D +K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKDQQAAQESASLSSKAKMVNGVQLLVSQLDNVEAKMLRTMVDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 805 A-TTADDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGTDVSALPA 862 Query: 888 AIAGVASFL 896 A+ V +++ Sbjct: 863 ALDSVEAWV 871 >gi|119472239|ref|ZP_01614418.1| alanyl-tRNA synthetase [Alteromonadales bacterium TW-7] gi|119445057|gb|EAW26352.1| alanyl-tRNA synthetase [Alteromonadales bacterium TW-7] Length = 866 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/903 (44%), Positives = 559/903 (61%), Gaps = 56/903 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF H+++PSSSLIP ND TL+F N+GMV FK++F G E Y T+ Sbjct: 6 TAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRATS 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ L Q Sbjct: 66 SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQEAIKFAWEFLTEVVKLPQE 125 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L +T+Y +DEEAF+ W K GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE I Sbjct: 126 KLLVTIYHDDEEAFEYWSKDIGLSEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEHI 185 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GG PGS EE G+R+IEIWNLVFMQ+ +QN LPK S+DTGMGLER++ +LQ + Sbjct: 186 WGGPPGSPEEDGDRFIEIWNLVFMQYNRQNDGTMLPLPKQSVDTGMGLERISAILQGVHS 245 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NY+IDLF+ LI A+ VT + + + RV+ DH+RS +FLI+DG++P+NEGRGYVLR Sbjct: 246 NYEIDLFQGLIAAAASVTNAQDMDDKSL--RVVADHIRSCAFLISDGVMPSNEGRGYVLR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + LG L+ AL +MG AYPEL + + +IE+ LR E+E+FGKTL Sbjct: 304 RIIRRAVRHGNKLGAQGAFFFKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGKTL 363 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RGL +L+ LS L K +++ GD+ FKLYDT+G P D+ D+ R + ID F + + Sbjct: 364 ERGLAILEESLSDL-KGDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHKGFEECM 421 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 QR A+ + G+ E++ +K+ T F GYD Sbjct: 422 AVQRKTAQ-QAGKFGADYNEQL---KSDKH--TDFKGYD--------------------- 454 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 + S+ V + GE V+ GQ+ V+ D+TPFYAE+GGQ GDTG G Sbjct: 455 --STHYSATVVEVFAGGEAVQLLEDGQEGIVILDRTPFYAESGGQTGDTGTITVAGGEFN 512 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 +T+ K F HH V+ G + + TID R + NH+ATH+LH AL +LG Sbjct: 513 VTNTTKLGNA-FAHHGTVQ-GRIGVNDKVDATIDDARRENIKKNHTATHILHEALRQLLG 570 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HVSQ GS + D LRFD +H + +T EL+ IE VND I +N + T +M +DA A Sbjct: 571 EHVSQKGSLVQADRLRFDFSHFEAVTKDELRDIERVVNDEIRRNFALNTELMAIDDAKAK 630 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY+D VRVV++ G +S LCGGTHV G+I L IVSES I AG+RR Sbjct: 631 GAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGVRR 685 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+TG A +++ Q+++L +A+ +K +V+ +V + E+ + L+ K+ QLN Sbjct: 686 IEAVTGADAVAYVSEQEQQLSDVAALVKGDSASVLEKVTALLEKSKGLE----KQIAQLN 741 Query: 783 VEDLSC------HKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKE 833 + S I ++N + +++ V +SK L+ ++D L+ KI SG+I L G++ Sbjct: 742 DKLASAAGASLLDSIVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVASG 800 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K S++ VT+DL + A +L A + GG GGGRP MAQ+GG A+ V Sbjct: 801 DKVSLIAGVTKDLTGKVKAGELVNHMASQV-GGKGGGRPDMAQAGGSEPQNLAAALDSVT 859 Query: 894 SFL 896 ++L Sbjct: 860 AWL 862 >gi|183596274|ref|ZP_02958302.1| hypothetical protein PROSTU_00005 [Providencia stuartii ATCC 25827] gi|188023874|gb|EDU61914.1| hypothetical protein PROSTU_00005 [Providencia stuartii ATCC 25827] Length = 876 Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/915 (44%), Positives = 572/915 (62%), Gaps = 67/915 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHTKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KE-FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT KE F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGKEWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+ +W K G+ D+IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAYDIWHKEVGIPVDRIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGI 290 +A VLQ +NYDID+F+ LI A+ + TG N++ N RVI DH+RS +FL++DG+ Sbjct: 244 IAAVLQHVNSNYDIDIFQELIAAAAKATG----SNDLSNKSLRVIADHIRSCAFLVSDGV 299 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + +LG + L+ L MG+A EL + + +E+ Sbjct: 300 IPSNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLINVMGAAADELARQQSTVEKV 359 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LLD L+ L K + L+G+ F+LYDT+G P+D+ D+ R + Sbjct: 360 LKTEEEQFARTLERGLQLLDEELAAL-KGDTLDGETVFRLYDTYGFPMDLTADVCRERNI 418 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F +A+E+QR RAR S G GT + SL + ++F GY Sbjct: 419 K-VDEEGFERAMEDQRRRARESS---GFGTD---YNSLIKVEKHSEFSGY---------- 461 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 N + + AI + G+ V+ +G++ V+ D+T FYAE+GGQ+GD Sbjct: 462 -------------AYNEQLATITAIYKNGQPVDSLNAGEEGLVILDKTAFYAESGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG D +TD QK + I H VE G L + ID + R + +NHSAT Sbjct: 509 TGLLRNDSGSFIVTDTQKYGQAIG-HIGKVESGSLVINHRIDAKIDVERRDAIRLNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HVSQ GS + LRFD +H + +T+A+L+ +ED VN I +N P+ Sbjct: 568 HLLHAALRQVLGEHVSQKGSLVNDKYLRFDFSHFEAMTAAQLREVEDIVNAQIRKNTPIE 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M+ E A A GA AL G KY +RVRV+S+ GG S LCGGTH S TG+I L I Sbjct: 628 TELMDLESAKAKGAMALFGEKYEERVRVLSM----GGDFSIELCGGTHASRTGDIGLFRI 683 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SES AG+RRIEA TG+ A + Q E+L ++A LK ++V +V+ E+ R+L Sbjct: 684 LSESGTAAGVRRIEATTGESALESVHSQSEQLNAIAHLLKGDMSSLVEKVKSALEKSRQL 743 Query: 771 QLIHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQ 821 + K LQL + S K D+ + ++S++++ E L++++D L+ +++ Sbjct: 744 E----KEILQLKDQQASQESASLSSKAKDIKGVKLLVSQLNNTEPKLLRTMVDDLKNQLK 799 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S II+L S + K S+++ VT DL + A DL A+ + GG GGGRP MAQ+GG + Sbjct: 800 SAIIVLSTTSGD-KVSIIVGVTNDLTAKIKAGDLISYVAQQV-GGKGGGRPDMAQAGGTD 857 Query: 882 GNKADQAIAGVASFL 896 + A+A V ++ Sbjct: 858 VSALPTAMASVEDWV 872 >gi|157369088|ref|YP_001477077.1| alanyl-tRNA synthetase [Serratia proteamaculans 568] gi|157320852|gb|ABV39949.1| alanyl-tRNA synthetase [Serratia proteamaculans 568] Length = 892 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/909 (44%), Positives = 568/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 21 STAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 80 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 81 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFNL 140 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EAF +W++ G+ A++IIRI N DNFW M +TGPCGPC+ Sbjct: 141 PKERLWVTVYETDDEAFDIWQQQIGVPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 200 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLER Sbjct: 201 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLER 260 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF LI A +VTG N + RVI DH+RS +FL++DG+ P Sbjct: 261 IAAVLQHVNSNYEIDLFSKLIAAVAKVTGATDLDNKSL--RVIADHIRSCAFLVSDGVTP 318 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG + L+ L MG A EL + + L+E+ L+ Sbjct: 319 SNEGRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQSLVEQVLK 378 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+++F +TL+RGL LLD L++L D L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 379 TEEDQFARTLERGLTLLDEELANLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERGLK- 436 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ + S+ GA+QF GYD E Sbjct: 437 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSMIRVDGASQFSGYD--------HEQ 482 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ S V A+ + G+ V E +G++ VV D+TPFY E+GGQ+GD G Sbjct: 483 QQ---------------STVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDKG 527 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +++D QK + I H + G L+ + ID R ++ +NHSATHL Sbjct: 528 VLKAANADFEVSDTQKYGQAIG-HQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATHL 586 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + LRFD +H + + +++++ED VN I +NLPV T Sbjct: 587 LHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRTVEDLVNQQIRRNLPVQTE 646 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA GA AL G KY+D VRV+++ G S+ LCGGTH S TG+I L I+S Sbjct: 647 VMALDDAKGKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILS 701 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG A + L Q++ L+ +A +K N+ +V + + R L+ Sbjct: 702 ESGTAAGIRRIEAVTGDGAIATLHQQNDLLQDVAHLVKGDSNNLTDKVRAVLDRTRALEK 761 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K VN + ++S++D +K L++++D L+ ++ S II+L Sbjct: 762 ELQQLKDQQAAQESASLSSKAKMVNGVQLLVSQLDNVEAKMLRTMVDDLKNQLGSAIIVL 821 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 822 A-TTADDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGTDVSALPA 879 Query: 888 AIAGVASFL 896 A+ V +++ Sbjct: 880 ALDSVEAWV 888 >gi|94309776|ref|YP_582986.1| alanyl-tRNA synthetase [Cupriavidus metallidurans CH34] gi|93353628|gb|ABF07717.1| alanyl-tRNA synthetase [Cupriavidus metallidurans CH34] Length = 884 Score = 731 bits (1887), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/908 (43%), Positives = 550/908 (60%), Gaps = 55/908 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS IR+ FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y T+ Sbjct: 13 VSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYVRATS 72 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLTK + L Sbjct: 73 SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLPAD 132 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ AD+I+RI N DNFW MA+TGPCGPCSEIF Sbjct: 133 KLWVTVYAEDDEAYDIWAKEVGVPADRIVRIGDNKGARYASDNFWQMADTGPCGPCSEIF 192 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 193 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGTMTPLPKPCVDTGMGLERIAA 252 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF+ LI+ + + T + N + +VI DH+R+ SFLI DG++P NE Sbjct: 253 VLQHVHSNYEIDLFQALIKGAGRETHIADLNQNSL--KVIADHIRACSFLIVDGVIPGNE 310 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG P L+ L +MG AYPEL +A+ + E L++E+ Sbjct: 311 GRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVGDLVAQMGEAYPELAEAQSRVVEVLKAEE 370 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +LD ++ L ++L+G++AFKL+DT G PLD+ QD+ + + + Sbjct: 371 ERFFETIENGMSILDAAVADLKAKGGKVLDGELAFKLHDTFGFPLDLTQDVAREQEIT-V 429 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K+ L+ T F GYD L Sbjct: 430 DEAAFDAAMTRQREQARA-------AGKFKMAAGLEYSGEKTVFHGYDALS--------- 473 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +GV V A+ G V+ GQ VV D TPFYAE+GGQ+GD G Sbjct: 474 -----------MDGVR--VTALYVDGASVDTMQPGQSGVVVLDNTPFYAESGGQVGDQGT 520 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + D K +F H + G L+ ++ +D R + NHSATHL+ Sbjct: 521 LVSGPAVFAVADTTKIQSDVFGHQGTLANGALKVGDTVAAQVDAVRRARTVRNHSATHLM 580 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + PD RFD +H+ P+T A+++ IE+ VN I N P V ++ Sbjct: 581 HKALREVLGTHVQQKGSLVDPDKTRFDFSHNAPLTDAQIRQIEEIVNAEILSNAPTVAQV 640 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+ SGA AL G KY D VRV+S+ S LCGGTHV+ TG+I L IV E Sbjct: 641 MPFDDAVKSGAMALFGEKYADDVRVLSIGT------SKELCGGTHVTRTGDIGLFKIVVE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + + AGIRR+EAITG A +L D +L A+ L+ +V R+ ++ ++ R L + Sbjct: 695 AGVAAGIRRVEAITGDNALHYLQSLDARLNEAAAALRAQPSELVPRIGQVQDQVRALEKE 754 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLV 828 L K KL + D + DV + + +++D K L+ MD L+ K+QS I+L Sbjct: 755 LEKLKSKLASSQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIVLA 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + +A Sbjct: 815 AVA-DGKVSLIAGVTADATSKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLPKA 872 Query: 889 IAGVASFL 896 +AGV ++ Sbjct: 873 LAGVTEWV 880 >gi|205830252|sp|Q1LQ59|SYA_RALME RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/908 (43%), Positives = 550/908 (60%), Gaps = 55/908 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS IR+ FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y T+ Sbjct: 3 VSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYVRATS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLTK + L Sbjct: 63 SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLPAD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ AD+I+RI N DNFW MA+TGPCGPCSEIF Sbjct: 123 KLWVTVYAEDDEAYDIWAKEVGVPADRIVRIGDNKGARYASDNFWQMADTGPCGPCSEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGTMTPLPKPCVDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF+ LI+ + + T + N + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQALIKGAGRETHIADLNQNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG P L+ L +MG AYPEL +A+ + E L++E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVGDLVAQMGEAYPELAEAQSRVVEVLKAEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +LD ++ L ++L+G++AFKL+DT G PLD+ QD+ + + + Sbjct: 361 ERFFETIENGMSILDAAVADLKAKGGKVLDGELAFKLHDTFGFPLDLTQDVAREQEIT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K+ L+ T F GYD L Sbjct: 420 DEAAFDAAMTRQREQARA-------AGKFKMAAGLEYSGEKTVFHGYDALS--------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +GV V A+ G V+ GQ VV D TPFYAE+GGQ+GD G Sbjct: 464 -----------MDGVR--VTALYVDGASVDTMQPGQSGVVVLDNTPFYAESGGQVGDQGT 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + D K +F H + G L+ ++ +D R + NHSATHL+ Sbjct: 511 LVSGPAVFAVADTTKIQSDVFGHQGTLANGALKVGDTVAAQVDAVRRARTVRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + PD RFD +H+ P+T A+++ IE+ VN I N P V ++ Sbjct: 571 HKALREVLGTHVQQKGSLVDPDKTRFDFSHNAPLTDAQIRQIEEIVNAEILSNAPTVAQV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+ SGA AL G KY D VRV+S+ S LCGGTHV+ TG+I L IV E Sbjct: 631 MPFDDAVKSGAMALFGEKYADDVRVLSIGT------SKELCGGTHVTRTGDIGLFKIVVE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + + AGIRR+EAITG A +L D +L A+ L+ +V R+ ++ ++ R L + Sbjct: 685 AGVAAGIRRVEAITGDNALHYLQSLDARLNEAAAALRAQPSELVPRIGQVQDQVRALEKE 744 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLV 828 L K KL + D + DV + + +++D K L+ MD L+ K+QS I+L Sbjct: 745 LEKLKSKLASSQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + +A Sbjct: 805 AVA-DGKVSLIAGVTADATSKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLPKA 862 Query: 889 IAGVASFL 896 +AGV ++ Sbjct: 863 LAGVTEWV 870 >gi|156932779|ref|YP_001436696.1| alanyl-tRNA synthetase [Cronobacter sakazakii ATCC BAA-894] gi|205830089|sp|A7MJ41|SYA_ENTS8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|156531033|gb|ABU75859.1| hypothetical protein ESA_00569 [Cronobacter sakazakii ATCC BAA-894] Length = 875 Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/909 (44%), Positives = 571/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI+A VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYEIDLFQKLIKAVANVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MG A EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVDVMGVAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I GA++F GYD Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHTE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +++ V A+ G+ VE+ +GQ+ VV D+TPFYAE+GGQ+GD G Sbjct: 466 ---------------LTAKVTALFVDGKSVEQVTAGQQAVVVLDETPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+G + D QK + I H + G+L+ + +D+ R ++ +NHSATHL Sbjct: 511 ELKGNGFTFTVNDTQKYGQAIG-HIGELASGVLKVGEGVKAEVDHARRDRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + GLRFD +H + + E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKGLRFDFSHFEAMKPEEIRKVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A A GA AL G KY DRVRV+S+ G S+ LCGG H S TG+I L IVS Sbjct: 630 VMDLEAAKAKGAMALFGEKYEDRVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A S + Q+++L L+ LK + +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGALSLVHAQNDRLNELSHLLKSDSQTLNDKVRAMVERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQQAAQESANLSSKAVDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSSVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELVGMIAQQV-GGKGGGRPDMAQAGGSDAAALPA 862 Query: 888 AIAGVASFL 896 A+ V S++ Sbjct: 863 ALGSVESWV 871 >gi|292487293|ref|YP_003530165.1| alanyl-tRNA synthetase [Erwinia amylovora CFBP1430] gi|292900336|ref|YP_003539705.1| alanyl-tRNA synthetase [Erwinia amylovora ATCC 49946] gi|291200184|emb|CBJ47312.1| alanyl-tRNA synthetase [Erwinia amylovora ATCC 49946] gi|291552712|emb|CBA19757.1| Alanyl-tRNA synthetase [Erwinia amylovora CFBP1430] Length = 876 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/910 (45%), Positives = 560/910 (61%), Gaps = 58/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y Sbjct: 4 STAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYTRAA 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F L Sbjct: 64 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHEAIAFAWELLTSSQWFGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W+K G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYETDDEAFNIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NY+IDLF LIQ+ QVTG N + RVI DH+RS +FLIADG++P Sbjct: 244 ITAVLQHVNSNYEIDLFAQLIQSVAQVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG L+ L MG+A +L + +E+ LR Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQSQVEQVLR 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F KTL+RGL LLD L +L D +L+G+ F+LYDT G P+D+ D+ R L Sbjct: 362 TEEEQFAKTLERGLALLDEELENLQGD-MLDGETVFRLYDTFGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E+QR RAR S G GS I A++F GY L+ Sbjct: 420 IDEAGFERAMEQQRQRARDAS-GFGSDYNNVIRIDQ-----ASEFKGYQQLQ-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +++ + AI G+ +GQ+ +V D TPFYAE+GGQ+GDTG Sbjct: 466 ---------------LNAAISAIFVDGQAANTISAGQEGVIVLDATPFYAESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ +++ QK A+ I H + G LR + +D R ++ +NHSATHL Sbjct: 511 KLQGNSASFIVSNTQKYAQAI-GHSGKLAIGELRVGDCVAAQVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HVSQ GS + LRFD + + +T E++ +E+ VN I +NLP+ T Sbjct: 570 LHAALRQVLGQHVSQKGSLVNDTYLRFDFSQFEAMTPQEMRQVEEIVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM E A A GA AL G KY+D VRV+S+ G S+ LCGGTH S TG+I L I S Sbjct: 630 IMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q+E+L +A +K + N+ +V + + R L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAQLVKANHSNLNEKVRALIDHARALEK 744 Query: 773 IHAKRKLQLNVED---LSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ LS IA + +S+V+ K L++++D L+ ++ S II+L Sbjct: 745 QLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++ + K S++ VT+DL DR A +L L+ KV GG GGGRP MAQ+GG + Sbjct: 805 ATVA-DGKVSLITGVTKDLTDRIKAGELVGELAQKV--GGKGGGRPDMAQAGGTDAMALP 861 Query: 887 QAIAGVASFL 896 A+AGV S++ Sbjct: 862 AALAGVESWV 871 >gi|146312813|ref|YP_001177887.1| alanyl-tRNA synthetase [Enterobacter sp. 638] gi|205830088|sp|A4WDQ6|SYA_ENT38 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145319689|gb|ABP61836.1| alanyl-tRNA synthetase [Enterobacter sp. 638] Length = 875 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/909 (44%), Positives = 571/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PG++EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGTAEEDGDRYIEIWNIVFMQFNRQIDGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF LI++ +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFSTLIKSVAEVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MG A EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVGPLVGVMGDAGEELKRQQSQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELSQLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFQGYDRLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +++ V A+ G+ V+ +GQ VV D+TPFYAE+GGQ+GD G Sbjct: 466 ---------------LNAKVTALFVDGKAVDSISAGQDAVVVLDKTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+G ++D QK + I H + G L+ + +D R ++ +NHSATHL Sbjct: 511 ELKGNGFSFAVSDTQKYGQAIG-HIGKLASGSLKVGEGVQAEVDEARRERIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H + + +E++++ED VN I +NLP+ T Sbjct: 570 MHAALRDVLGTHVAQKGSLVNDKILRFDFSHFEAMKPSEIRAVEDMVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAARAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L + ++L +A LK N+ +V E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIASLHAESDQLHDIAQLLKGDSHNLGEKVRSALERSRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q V++ + K D+ + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAVQESANLSSKAVDIKGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 A-TAVDGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPA 862 Query: 888 AIAGVASFL 896 A+A V S++ Sbjct: 863 ALASVESWV 871 >gi|127512149|ref|YP_001093346.1| alanyl-tRNA synthetase [Shewanella loihica PV-4] gi|205830205|sp|A3QC89|SYA_SHELP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126637444|gb|ABO23087.1| alanyl-tRNA synthetase [Shewanella loihica PV-4] Length = 874 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/910 (43%), Positives = 570/910 (62%), Gaps = 56/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLEFF++NGH+++ SSSL+P NDPTL+FTN+GM FK++F G++K Y T Sbjct: 4 TTAALRSAFLEFFRRNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGEDKRDYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LT+E L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY+ D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTVYETDDEAFEIWNKEIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PG+ EE G+R+IEIWN+VFMQ+ +Q LPK S+DTGMG+ER+A Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGTMDPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ G+ N + RV+ DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQSLIKKTAEILGVTDLENKSL--RVVADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A EL+ + ++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKELVATQAIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD LS L E L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDNALSQLEGKE-LDGETAFKLYDTYGFPVDLTADVCRERDIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A +G + + + T+F GY L Sbjct: 420 EAGFEAAMAEQRSRAQA------AGQFDTDYNDSLKIDAETEFCGYSDL----------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 NG + ++ V G+ V+ G + VV D TPFY E+GGQ GD G Sbjct: 463 -----------NGEAKVIGLYV-DGQAVDALAEGDQGVVVLDSTPFYGESGGQCGDKGLL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +G+ ++ D QK + + H +V+ G + +L +D + R + +NHS THLLH Sbjct: 511 SAEGVEFEVKDTQKYGQAMG-HIGLVKAGSIAMGQTLNAAVDKKLRHRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + ELK +ED VN I +N + +M Sbjct: 570 AALRQVLGTHVSQKGSLVEPERLRFDFSHFEAVKREELKQVEDLVNTQIRRNHELKAEVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 DIDQAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 I AGIRRIEA+TG A +++ Q +L+ AS LK +VV +++ ++ ++L +L Sbjct: 685 GIAAGIRRIEAVTGAAAIAYVGEQQAQLEQAASLLKGDSASVVAKLKAQLDKTKQLEKEL 744 Query: 773 IHAKRKLQLNVE-DLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL+ ++A V + ++ V++ L+ + D L++K+QSGI++L G Sbjct: 745 SQLKDKLAAATSADLAGEAQELAGVKVLVKLLEGVEAGALRGLQDELKQKLQSGIVVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I+ + K +++ VT+DL + A +L A ++A+V GG GGGRP MAQ+GG K A Sbjct: 804 IAGDAKVNLIAGVTKDLTGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSEPEKLAGA 861 Query: 889 IAGVASFLKK 898 + V +L + Sbjct: 862 LDSVIPWLSE 871 >gi|205830248|sp|A9MFZ1|SYA_SALAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 876 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/894 (44%), Positives = 560/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+ +W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYGIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI+A +VTG N + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYEIDLFRTLIEAVAKVTGATDLSNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERDIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFETAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVNGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G + D QK + I H + G L+ + +D R ++ +NHSATHL Sbjct: 511 ELKGVGFTFAVNDTQKYGQAIG-HLGKLSAGALKVGDVVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS ++ LRFD +H++ + +E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGAHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETH 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM E A A GA AL G KY++RVRV+S+ G S+ LCGGTH TG+I L I+S Sbjct: 630 IMELEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHARRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + Q ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERSRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKDQAAAQESASLSSKAVDLNGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ R A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTGRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|109899322|ref|YP_662577.1| alanyl-tRNA synthetase [Pseudoalteromonas atlantica T6c] gi|123360521|sp|Q15RG5|SYA_PSEA6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|109701603|gb|ABG41523.1| alanyl-tRNA synthetase [Pseudoalteromonas atlantica T6c] Length = 865 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/902 (43%), Positives = 570/902 (63%), Gaps = 48/902 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL FF GH+ + SSSL+P +DPTL+FTN+GM FK++F G E+ Y T Sbjct: 4 STAQIRQAFLNFFADKGHQKVSSSSLVPSDDPTLLFTNAGMNQFKDVFLGTEQRKYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI AW LT+ L + Sbjct: 64 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHQAIGYAWSFLTEVLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TVY ED+EAF +W G+ +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 124 DKLLVTVYSEDDEAFDIWHNDIGIPKEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 183 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PGS EE G+R+IEIWNLVFMQF +Q + LPK SIDTGMGLER++ ++Q Sbjct: 184 IWGGPPGSPEEDGDRFIEIWNLVFMQFNRQANGDMLPLPKPSIDTGMGLERISAIIQNVH 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+ID+F++LI+A+ ++ G+ + + RV+ DH+RS SFLI+DG++P+NEGRGYVL Sbjct: 244 SNYEIDIFQNLIKATAKIVGVTSLEDKSL--RVVADHIRSCSFLISDGVMPSNEGRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG L+ AL TEMG AYPEL + + +IE+ LR E+E+F +T Sbjct: 302 RRIIRRAVRHGNKLGANGVFFYKLVAALATEMGDAYPELNEQRAVIEKVLRVEEEQFSRT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG+++L+ L+ L + +++ GDV FKLYDT+G P D+ D+ +GL+ ID F QA Sbjct: 362 LERGMLILNDALNEL-EGKVVPGDVVFKLYDTYGFPADLTNDVAREKGLS-IDEEGFEQA 419 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + EQR RA+ S E++ L+ + F+GY+ ED Sbjct: 420 MAEQRKRAQKAS-NFDVDYNEQLRSDLE-----SIFVGYE--------HEDN-------- 457 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 ++ + + +G+ V E +G + V+ D++PFYAEAGGQ GDTG + D Sbjct: 458 -------TATITELFFKGQSVNELAAGAEGTVILDESPFYAEAGGQAGDTGTLVTDAGGF 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + D K + I A + + L S++ ++ R + +NHSATHL+H AL +IL Sbjct: 511 SVKDTVKLGKAIAHKGAALSK--LSVGDSVLAKVNGVRRHAIKLNHSATHLMHAALKSIL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV+Q GS + D LRFD +H + ++ ++ ++E VN+ I N P+ T++M E A Sbjct: 569 GEHVNQKGSLVQADRLRFDFSHFEAMSKEQVLAVETMVNEQILANHPLQTQLMGLEQAKE 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 +GA AL G KY+D VRVVS+ G S LCGGTHV TG+I L I+SES I +G+R Sbjct: 629 AGAMALFGEKYDDDVRVVSM-----GSFSMELCGGTHVERTGDIGLFKIISESGIASGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+TG A H+ Q +L S+++ LK + RV ++ E+ + L+ AK K ++ Sbjct: 684 RIEAVTGLTALQHVQQQTFELSSISAVLKTDVNSAGERVVQLIEQTKTLEKEVAKLKQEI 743 Query: 782 NV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 DL ++I V +S+ + ++S L++++D L+ +I SG+I+L G++ K Sbjct: 744 ANSAGSDLLSQINEINGVKVLSYHVQGIESGALRTMIDDLKNQIGSGVILL-GLATGDKV 802 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 S++ VT+DL + A +L A+ + GG GGGRP MAQ+GG D AIA V+ +L Sbjct: 803 SLIAGVTKDLTHKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGSQPENLDTAIASVSEWL 861 Query: 897 KK 898 ++ Sbjct: 862 QE 863 >gi|163749985|ref|ZP_02157229.1| alanyl-tRNA synthetase [Shewanella benthica KT99] gi|161330259|gb|EDQ01240.1| alanyl-tRNA synthetase [Shewanella benthica KT99] Length = 874 Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/909 (43%), Positives = 569/909 (62%), Gaps = 56/909 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 +++RT FLE+F+KNGH+++ SSSL+P NDP+L+FTN+GM FK +F G++K Y T+ Sbjct: 5 TAALRTAFLEYFRKNGHQVVDSSSLVPVNDPSLLFTNAGMNQFKGVFLGEDKRNYTRATS 64 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+E + + Sbjct: 65 SQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAITFAWNFLTQELKIPKE 124 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 RL +T+Y+ D EA+ +W K G+SAD +IRI N DNFW M +TGPCGPCSEIF Sbjct: 125 RLCVTIYETDNEAYDIWTKEIGISADNLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEIF 184 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D GE I GG PG+ EE G+R+IEIWN+VFMQ+ +Q+ E LPK S+DTGMG+ER+A Sbjct: 185 YDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSNGEMLALPKPSVDTGMGIERIAA 244 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 ++Q +NY+ID+F+ LI+ + ++ + N + RVI DH+RS +FLIADG++P+NE Sbjct: 245 IMQGVHSNYEIDIFQALIKKTAEILAVTDLENKSL--RVISDHIRSCAFLIADGVMPSNE 302 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG T+ L+P L MG A L++ + ++ ++L++E+ Sbjct: 303 GRGYVLRRIIRRAVRHGNKLGATDSFFYKLVPTLIEVMGEAAKGLVETQAIVVKSLKAEE 362 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E+F +TL+RGL +LDG L+ L + +L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 363 EQFARTLERGLGILDGALNALSGN-VLDGETAFKLYDTYGFPVDLTADVCRERDIT-VDE 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A+ QR RA+A GT + E+ T+F GY Sbjct: 421 AGFELAMSAQRKRAQAAGQ---FGTDYNDSLKIDEE---TEFSGY--------------- 459 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 IDL + ++ + AI +QG+ V E +G++ VV D TPFY E+GGQ GD+G Sbjct: 460 ------IDLVS--NAKITAIYKQGKSVTEINAGEEALVVLDTTPFYGESGGQCGDSGTLS 511 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 +GI + D QK + + H ++ G L SL ++D R++ +NHS THLLH Sbjct: 512 TNGIEFIVKDTQKYGQAVG-HLGALKTGSLSLGQSLEASVDKSLRQRTELNHSVTHLLHA 570 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HVSQ GS + P+ LRFD +H + + EL+++ED VN I N + ++M Sbjct: 571 ALRQLLGTHVSQKGSLVDPERLRFDFSHFEGVKPEELQAVEDLVNSQIRHNHELTAQVMT 630 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A GA AL G KY D VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 631 IDAAKEQGAMALFGEKYADEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEGG 685 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 I AGIRRIEA+TG A +++ Q +L A LK G+VV +++ E ++L +L Sbjct: 686 IAAGIRRIEAVTGAAAMAYVTSQKVELDQAAKLLKADSGSVVIKLKAQLERTKQLEKELS 745 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGI 830 K K + ++N + +I ++D E L+ + D L++K+ SGI++L GI Sbjct: 746 QLKDKFAAATSADLAGEAQEINGVKVLIKKLDGVEPSALRGLQDELKQKLGSGIVVL-GI 804 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K ++++ VT+DL + A +L A ++A V GG GGGRP MAQ+GG D A+ Sbjct: 805 TGDAKVNLIVGVTKDLTSKVKAGELVANIAALV--GGKGGGRPDMAQAGGCQPENLDAAL 862 Query: 890 AGVASFLKK 898 V+S+LK+ Sbjct: 863 NKVSSWLKE 871 >gi|330720929|gb|EGG99105.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC2047] Length = 865 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/900 (45%), Positives = 559/900 (62%), Gaps = 46/900 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+F + GHE L SSSL+P NDPTL+FTN+GMV FK +F G E Y TT Sbjct: 4 SDIRNAFLDFLVQQGHERLASSSLVPGNDPTLLFTNAGMVQFKELFLGNETRSYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+ L + + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKVEAIKFAWTFLTEVMGLPEEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TVY+ED+EA +W K G+SA++ R+ DNFWSM +TGPCGPC+EIF+D GE + Sbjct: 124 LWVTVYEEDDEAADIWLKDMGVSAERFSRLGKKDNFWSMGDTGPCGPCTEIFYDHGEEVA 183 Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS E+G+RYIEIWNLVFMQFE+ LPK S+DTGMGLER+A V+Q NN Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFERAADGTMTPLPKPSVDTGMGLERIAAVMQGVHNN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y+IDLF+ L++ + +V G+ N + RVI DH+RS SFL++DG++P+N+GRGYVLRR Sbjct: 244 YEIDLFQTLLKRAAEVVGVSDTSNTSL--RVIADHIRSCSFLVSDGVIPSNDGRGYVLRR 301 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG + ++ AL EMG AYPEL+ + IE+ L E+E+F KTLD Sbjct: 302 IIRRAIRHGHKLGMKDAFFHKIVSALVDEMGEAYPELVTRQAQIEQVLAKEEEQFAKTLD 361 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +G+ + + LS L +EI G+ F+LYDT+G P+D+ DI R L +DI F QA++ Sbjct: 362 QGMQIFERDLSELKGNEI-PGETIFRLYDTYGFPVDLTADIARERNLI-MDIAGFEQAMQ 419 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQR RARA S + F G T F GYDLL CQ Sbjct: 420 EQRERARAAS-SFDVDMRADVVFE-----GETDFCGYDLLTEQ----------CQ----- 458 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + A+V++G+ E + G VV D TPFYAE+GGQ+GD G D ++ Sbjct: 459 --------ISALVKEGDTAESLIEGDTGVVVLDHTPFYAESGGQVGDVGTLQTDEAVFRV 510 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 T+ K+A G +H +VERG LV +D + R+ ++NHSA+HLLH AL +LG Sbjct: 511 TNTVKQA-GTHLHQGVVERGSFTVGTKLVAEVDTRKRQATALNHSASHLLHAALRDVLGE 569 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV+Q GS ++P+ LRFD +H + +T+ +L +IE VND I N V T +M EDA+ SG Sbjct: 570 HVAQKGSLVSPERLRFDFSHFEAVTAQQLSAIEAMVNDKIQANSEVGTELMALEDAMNSG 629 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 AL G KY+D VRV+S+ DG S LCGGTHV+ TG+I + I+SES + AG+RRI Sbjct: 630 VTALFGEKYSDEVRVLSM--ADG--FSVELCGGTHVNRTGDIAVFKIISESGVAAGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-- 781 EA+TG A ++ ++ L +A LK + V +V+ + + R+L+ A K +L Sbjct: 686 EAVTGNAALTYYQNLEQDLTEIAGVLKSAPEQTVEKVQLLASKNRQLEKELAALKAKLVT 745 Query: 782 -NVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + DL+ + V ++H VD K L S MD L+ K+ + +I+L +K K S+ Sbjct: 746 SSGRDLASEAVELNGVKVLAHAFEGVDGKTLLSTMDQLKSKLGTAVIVL-ATAKGDKVSL 804 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + VT+D DR A +L + A + GG GGGRP MAQ+GG A+A V +L++ Sbjct: 805 VAGVTKDATDRVKAGELVNMVAGQV-GGKGGGRPDMAQAGGNQPEAIPAALASVVPWLEQ 863 >gi|294141935|ref|YP_003557913.1| alanyl-tRNA synthetase [Shewanella violacea DSS12] gi|293328404|dbj|BAJ03135.1| alanyl-tRNA synthetase [Shewanella violacea DSS12] Length = 874 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/911 (43%), Positives = 570/911 (62%), Gaps = 58/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++RT FLE+F KNGH+++ SSSL+P NDPTL+FTN+GM FK++F G++K Y T Sbjct: 4 TTAALRTAFLEYFHKNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+E + + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAITYAWNFLTQELKIPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D EA+ +W K G+S D +IRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYETDNEAYDIWTKEIGVSEDNLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PG+ EE G+R+IEIWN+VFMQ+ +Q+ + LPK S+DTGMG+ER+A Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSNGDMLALPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ + N + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILAVTDLENKSL--RVISDHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T+ L+P L MG A L++ + ++ ++L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDSFFYKLVPTLILVMGDAAKGLVETQDIVVKSLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LDG L+ L ++L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDGALNAL-TGKVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDR 473 F A+ EQR RA+A T + E+ T+F GY DL+ +K Sbjct: 420 EAGFELAMSEQRKRAQAAGQ---FATDYNDSLKIDEE---TEFSGYLDLVSNAK------ 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + AI ++GE V E +G++ VV D TPFY E+GGQ GD+G Sbjct: 468 ------------------ITAIYKEGESVTEINAGEEAVVVLDTTPFYGESGGQSGDSGT 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G + D QK + I H ++ G L SL ++D R++ +NHS THLL Sbjct: 510 LSAAGFDFIVKDTQKYGQAIG-HIGTLKTGSLSLGQSLEASVDKALRQRTELNHSVTHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HVSQ GS + P+ LRFD +H + + EL+++ED VN I N + ++ Sbjct: 569 HAALRQLLGTHVSQKGSLVDPERLRFDFSHFEGVKPEELQAVEDLVNTQIRCNHELTAQV 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M + A GA AL G KY D VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 629 MTIDAAKDKGAMALFGEKYADEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + I AGIRRIEA+TG A +++ GQ +L A LK G+VV +++ + ++L + Sbjct: 684 AGIAAGIRRIEAVTGAAAMAYVAGQKSELDKAAKLLKADAGSVVTKLKAQLDRTKQLEKE 743 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828 L K KL + ++N + +I ++D E L+ ++D L++K+ SGI++L Sbjct: 744 LSQLKDKLAAATSADLAGEAQEINGVKVLIKKLDGVEPGALRGLLDELKQKLGSGIVVL- 802 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 GI+ + K ++++ VT+DL + A +L A ++A+V GG GGGRP MAQ+GG D Sbjct: 803 GIAGDAKVNLIVGVTKDLTSKVKAGELVANIAAQV--GGKGGGRPDMAQAGGSKPENLDA 860 Query: 888 AIAGVASFLKK 898 A+ VAS+L++ Sbjct: 861 ALNQVASWLQE 871 >gi|293392770|ref|ZP_06637088.1| alanine-tRNA ligase [Serratia odorifera DSM 4582] gi|291424629|gb|EFE97840.1| alanine-tRNA ligase [Serratia odorifera DSM 4582] Length = 875 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/909 (44%), Positives = 568/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKNDAIAYAWELLTGENWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W+ G+ A++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAFNIWQNEIGIPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI+A +VTG N + RVI DH+RS +FLI+DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRTLIEAVAKVTGATDLDNKSL--RVIADHIRSCAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MG A EL + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIGVMGPAADELKSQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+E QR RAR S G G+ + SL GA++F GYD D Sbjct: 420 VDEAGFEAAMEAQRRRARESS-GFGAD-----YNSLIRVDGASEFCGYD---------HD 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ + + A+ + G+ V+E +G++ VV D TPFY E+GGQ+GD G Sbjct: 465 QQ--------------QAKITALFRDGQPVDEIHAGEEAVVVLDATPFYGESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D QK + I H + +G+L+ S+ ID R ++ +NHSATHL Sbjct: 511 ILKSAAAEFVVGDTQKYGQAIG-HQGKLAQGVLKVGDSVDALIDQVRRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + +++++ED VN + +NLPV T Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRAVEDLVNQQVRRNLPVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA GA AL G KY+D VRV+++ G S+ LCGGTH S TG+I L I S Sbjct: 630 VMALDDAKEKGAMALFGEKYDDHVRVLTM-----GDFSTELCGGTHASRTGDIGLFRIQS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + R L+ Sbjct: 685 ESGTAAGIRRIEAVTGEGAIATLHQQSDLLQEVAHLVKGDGNNLSEKVRAVLDRTRTLEK 744 Query: 773 -IHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827 + + Q +E S K VN + ++S++D+ E L++++D L+ ++ S II+L Sbjct: 745 ELQQLKDQQAALESASLSSKAKQVNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + E K S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + N Sbjct: 805 A-TTAEGKVSLIAGVTKDLTDRVKAGELIGNVAQQV-GGKGGGRPDMAQAGGSDVNALPA 862 Query: 888 AIAGVASFL 896 A+ V +++ Sbjct: 863 ALDSVEAWV 871 >gi|167623167|ref|YP_001673461.1| alanyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4] gi|205830204|sp|B0TK15|SYA_SHEHH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167353189|gb|ABZ75802.1| alanyl-tRNA synthetase [Shewanella halifaxensis HAW-EB4] Length = 874 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/908 (43%), Positives = 562/908 (61%), Gaps = 56/908 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAALRSAFLEYFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLGADKRSYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW LT+E L + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIHFAWTFLTEELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYETDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMKPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + + G+ N + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAAILGVTDLENKSL--RVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L + + ++E++L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATESFFYKLVPTLIEVMGDAAKGLQETQAIVEKSLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L ++L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDAALNEL-TTKVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQR RA+A +G + + + + F GY Sbjct: 420 EAGFEAAMAEQRKRAQA------AGQFDTDYNEGLKIDEQSSFTGY-------------- 459 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +L N + V AI + GE E +G + +V D TPFY E+GGQ GD G Sbjct: 460 -------TELNN--QATVTAIFKSGEAAETITAGDEAVIVLDNTPFYGESGGQSGDKGVL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 I DGI + D QK + I H V G ++ SL +D + R + +NHS THLLH Sbjct: 511 IADGIEFTVIDTQKYGQAIG-HIGRVVTGEIKAGQSLTANVDKKLRHRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN I +N + +M Sbjct: 570 AALRQVLGAHVSQKGSLVDPERLRFDFSHFEGVKANELKEVEELVNTQIRRNHELTAEVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A GA AL G KY+ VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 DIETAKEKGAMALFGEKYDSEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 I AGIRRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L +L Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAKQQAQLEEAATLLKGDSASVVAKLKAQLDKTKQLEKEL 744 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + +VN + ++ + VD+ L+ + D L++K+QSGI++L Sbjct: 745 SQLKDKLAAATSADLAGEAVEVNGVKVLVKKLEGVDAGALRGLQDELKQKLQSGIVVLA- 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I+ E K ++++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG D A Sbjct: 804 IAGEDKVNLIVGVTKDLTGKVKAGELVASIAVQV--GGKGGGRPDMAQAGGSQPENLDGA 861 Query: 889 IAGVASFL 896 + V ++ Sbjct: 862 LEQVIPWI 869 >gi|260599084|ref|YP_003211655.1| alanyl-tRNA synthetase [Cronobacter turicensis z3032] gi|260218261|emb|CBA33198.1| Alanyl-tRNA synthetase [Cronobacter turicensis z3032] Length = 875 Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/909 (44%), Positives = 571/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT + F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGAQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKDRLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI+A VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYEIDLFQKLIKAVANVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVDVMGSAGDELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I GA++F GYD Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDQTE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +++ V A+ G+ VE+ +GQ+ VV D+TPFYAE+GGQ+GD G Sbjct: 466 ---------------LTARVTALFIDGKSVEQVAAGQQAVVVLDETPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+G + D QK + I H + G+L+ + +D R ++ +NHSATHL Sbjct: 511 ELKGNGFTFTVNDTQKYGQAIG-HIGELTSGVLKVGEGVKAEVDQARRERIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + GLRFD +H + + E++ +ED VN I +NLP+ T Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKGLRFDFSHFEAMKPEEIRKVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A A GA AL G KY DRVRV+S+ G S+ LCGG H S TG+I L IVS Sbjct: 630 VMDLEAAKAKGAMALFGEKYEDRVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A S + Q+++L L+ LK + +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGALSLVHAQNDRLNELSHLLKSDSQTLNDKVRAMVERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+N + ++SE V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQQAAQESANLSSKAIDINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSSVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K S++ V++D+ +R A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTERVKAGELVGMIAQQV-GGKGGGRPDMAQAGGTDAAALPA 862 Query: 888 AIAGVASFL 896 A+ V S++ Sbjct: 863 ALGSVESWV 871 >gi|330502669|ref|YP_004379538.1| alanyl-tRNA synthetase [Pseudomonas mendocina NK-01] gi|328916955|gb|AEB57786.1| alanyl-tRNA synthetase [Pseudomonas mendocina NK-01] Length = 874 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/911 (45%), Positives = 562/911 (61%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ +++IRI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGIPTERMIRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L+ AS + G EG + +V+ DH+RS SFLIADG+ P+N Sbjct: 244 AVLQHVNSNYEIDLFQNLLAASAKAIGCANEGQ--ASLKVVADHIRSCSFLIADGVTPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L++E Sbjct: 302 EGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVLKTE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L + ++ GDV FKLYDT+G P+D+ DI R L+ +D Sbjct: 362 EEQFAKTLEQGLKILEQDLASL-QGSVIPGDVVFKLYDTYGFPVDLTADIARERELS-VD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A + G+ K+ T+F+GY Sbjct: 420 EEGFEREMEAQRERARSASAFGMDYNALVKV-------DADTRFLGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + T+G I+ A+ + G V+ G++ VV DQTPFYAE+GGQ+GD G Sbjct: 460 ---------EGTSGSGKII-ALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDCGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G G+R + D KA G F+HH +V +G L S+ +D + R+ ++NHSATHLL Sbjct: 510 LEGAGVRFDVRDT-TKAGGAFLHHGVVAKGGLNVGASVKAEVDAEVRQATALNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I ++K +ED VN ++ +N V T + Sbjct: 569 HEALRIVLGDHVQQKGSLVNSQRLRFDFSHFEAIKPEQIKQLEDIVNRVVRENSAVETEV 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D+VRV+S+ GG S LCGGTHV+ TG+I L IVSE Sbjct: 629 TDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVARTGDIGLFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AG+RRIEA+TG A ++L G +E+LK AS +K S+ NV+ ++ + E R+L + Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLEKE 744 Query: 772 LIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K K DL S + ++ + +D K L +++D L+ K+ S +I+L Sbjct: 745 LEQLKAKAASAAGNDLAGSAVDVKGTKVLAARLDGLDGKALLALVDQLKNKLGSAVILLG 804 Query: 829 GISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G+ +EK VL+ VT+DL + A DL R A GG GGGRP MAQ GG + K D+ Sbjct: 805 GVFEEK--VVLVAGVTQDLTSKLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGVDAGKLDE 861 Query: 888 AIAGVASFLKK 898 A+A A+ +++ Sbjct: 862 ALALAATLVEQ 872 >gi|78357417|ref|YP_388866.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552081|sp|Q30YS5|SYA_DESDG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78219822|gb|ABB39171.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 880 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/905 (43%), Positives = 551/905 (60%), Gaps = 48/905 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLEFF+KNGHE++ SSSL+P +DPTL+FTN+GMV FK IF GQEK Y Sbjct: 1 MITANEIRHRFLEFFRKNGHEVVDSSSLVPNDDPTLLFTNAGMVQFKKIFLGQEKRAYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW +T+E L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWSFITEELKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LYIT+Y +D+EA KLW+ ++G+ +++I R+ DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PKEKLYITIYRDDDEAEKLWQSVAGVPSERIYRLGEKDNFWSMGDTGPCGPCSEIHIDQG 180 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 C P G + +R++EIWNLVFMQ++Q R LP IDTGMGLER+A V Sbjct: 181 ADMACGPDCGIGKC-DCDRFLEIWNLVFMQYDQAPDGTRTPLPNPCIDTGMGLERIAAVC 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPAN 294 Q +N+D DLF+ I + ++ G+ Y ++ RVI DH R+ +F+IADGILP+N Sbjct: 240 QNVRSNFDCDLFQAFINYTAELAGVSYRKDSEDTDTALRVIADHSRAIAFMIADGILPSN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + RL+G + + EMG A+PEL++ K + +R E Sbjct: 300 EGRGYVLRRLIRRAYRFGRLIGLEGSYLYKTALKVVEEMGGAFPELLENKDFMARVVREE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF KTLD+GL+LL+ LS L + GDVAFKLYDT G PLDI+ DI RG + Sbjct: 360 EERFNKTLDKGLLLLEDELSALTARNSTCVAGDVAFKLYDTFGFPLDIVNDIAEKRGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F + ++EQ+SRA+A G G T + +L E+ A++F+GYD L Sbjct: 419 VDEDGFKKLMQEQKSRAKAAWKGGGEQTLAARFQALLEEGIASEFVGYDHLSAE------ 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S I+ + + E VE +G +V +TPFY E+GGQLGDTG Sbjct: 473 ----------------SRIIALLGEDMESVEALPAGAAGYLVSTRTPFYGESGGQLGDTG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 A+ + ++TD K + + VH V +G L + ++ LT+ R + NH+ TH+ Sbjct: 517 DAVSETGSAEVTDTLKPSAKLLVHVVKVSQGELLRDQAVTLTVREGQRFASARNHTCTHI 576 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + P+ LRFD TH +T E+ ++E+ VN +I ++ + + Sbjct: 577 LHAALRKVLGDHVKQAGSLVGPERLRFDFTHISAMTPEEILAVENEVNRVILSDIALNSE 636 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M +DA+ GA AL G KY VRVVS+ E S LCGGTH+ +TG+ YI S Sbjct: 637 HMAYDDAVQKGAMALFGEKYESEVRVVSIPGE-----SVELCGGTHLRATGQAGSFYITS 691 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEA+TG A M Q +L +A +K G++ GRV+ + +E R L+ Sbjct: 692 ESGVAAGVRRIEAVTGWDAVRLFMQQRAELHEVAGLVKGKPGDIAGRVKTLQKEVRTLKK 751 Query: 773 IHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K Q N+ D S ++ V ++ + + K L+ VMD ++ K+ SG+ Sbjct: 752 DMEKLAAQAASGKGRNLMD-SVEEVNGVKLLAASLPGANVKALREVMDDVRSKLTSGVAC 810 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 LV + + K +LI V++DL DRF A L + ++A++ GG GGGRP MAQ+GG + Sbjct: 811 LVAVDGD-KVHMLIAVSKDLHDRFTAPALIKDVAARI--GGSGGGRPDMAQAGGTDPQGV 867 Query: 886 DQAIA 890 + A A Sbjct: 868 EDAFA 872 >gi|188534789|ref|YP_001908586.1| Alanyl-tRNA synthetase [Erwinia tasmaniensis Et1/99] gi|188029831|emb|CAO97712.1| Alanyl-tRNA synthetase [Erwinia tasmaniensis Et1/99] Length = 875 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/910 (44%), Positives = 565/910 (62%), Gaps = 58/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR +FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y T Sbjct: 4 STAEIRQSFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRSYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT + F L Sbjct: 64 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQEAIAFAWELLTSDQWFGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF++W+K G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYETDDEAFEIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NY+IDLF LI++ QVTG + N + RVI DH+RS +FLIADG++P Sbjct: 244 ITAVLQHVNSNYEIDLFAQLIKSVAQVTGAEDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG L+ L MG+A +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAEGTFFFKLVAPLIAVMGTAGEDLKRQQSQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F KTL+RGL LLD L +L D L+G+ F+LYDT G P+D+ D+ R L Sbjct: 362 TEEEQFAKTLERGLALLDEELENLQGD-TLDGETVFRLYDTFGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E+QR RAR S G G+ I A++F GY L+ Sbjct: 420 IDEAGFERAMEQQRQRARKAS-GFGADYNNVIHIDQ-----ASEFKGYQQLQ-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +++ + AI GE + +GQ+ +V D TPFYAE+GGQ+GDTG Sbjct: 466 ---------------LNAAITAIFVDGESADTISAGQEGVIVLDSTPFYAESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ ++D K A+ I H + G LR S+ +D R ++ +NHSATHL Sbjct: 511 ELRGNSASFMVSDTHKYAQAI-GHSGKLAAGKLRVGDSVSAQVDEARRERIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + +T+ E++ +E+ VN + +NL + T Sbjct: 570 LHAALRQVLGHHVAQKGSLVNDKYLRFDFSHFEAMTAQEIRQVEEIVNAQVRRNLSIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM E A A GA AL G KY+D VRV+S+ G S+ LCGGTH + TG+I L I S Sbjct: 630 IMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHANRTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 ES AG+RRIEA+TG+ A + L Q+E+L +A +K + N+ +V + + R L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAHLVKANNSNLNEKVRALLDHTRALEK 744 Query: 772 LIHAKRKLQLNVEDLSCHKIA----DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + R Q E S A + +S+V+ K L++++D L+ ++ S II+L Sbjct: 745 QLQQLRDQQAAQESASLSSKAVTLKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K S++ VT+DL DR A +L L+ +V GG GGGRP MAQ+GG + Sbjct: 805 ATVV-DGKVSLITGVTKDLTDRIKAGELVGELALQV--GGKGGGRPDMAQAGGADALALP 861 Query: 887 QAIAGVASFL 896 A+AGV S++ Sbjct: 862 AALAGVESWV 871 >gi|77359489|ref|YP_339064.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125] gi|123589570|sp|Q3ILF3|SYA_PSEHT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|76874400|emb|CAI85621.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis TAC125] Length = 868 Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/903 (44%), Positives = 552/903 (61%), Gaps = 56/903 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF H+++PSSSLIP ND TL+F N+GMV FK++F G E Y T+ Sbjct: 6 TAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRATS 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LT+E L + Sbjct: 66 SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWQFLTEEVKLPKE 125 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L +T+Y +DEEAF W GL AD+IIRI T DNFWSM +TGPCGPCSEIF+D GE I Sbjct: 126 KLLVTIYHDDEEAFNYWSNDIGLPADRIIRIATADNFWSMGDTGPCGPCSEIFYDHGEHI 185 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GG PGS EE G+R+IEIWNLVFMQ+ +QN LPK S+DTGMGLER+A +LQ + Sbjct: 186 WGGPPGSPEEDGDRFIEIWNLVFMQYNRQNDGTMLPLPKQSVDTGMGLERIAAILQGVHS 245 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NY+IDLFK LI A+ VT + + + RV+ DH+RS +FLI+DG++P+NEGRGYVLR Sbjct: 246 NYEIDLFKGLIAAAASVTNAQDMDDKSL--RVVADHIRSCAFLISDGVMPSNEGRGYVLR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + LG L+ AL +MG AYPEL + + +IE+ LR E+E+FGKTL Sbjct: 304 RIIRRAVRHGNKLGAQGAFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGKTL 363 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RGL +L+ LS L K +++ GD+ FKLYDT+G P D+ D+ R + ID F + + Sbjct: 364 ERGLAILEESLSDL-KGDVIPGDLVFKLYDTYGFPADLTADVARERQMT-IDNKGFEECM 421 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 QR A+ K+GA + +K D++ + Sbjct: 422 AVQRKTAQQAG-----------------KFGADY---------NDQLKSDKQTTYKGYT- 454 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 T S+ V + E V GQK V+ D+TPFYAE+GGQ+GDTG G Sbjct: 455 --TTSHSATVVEVFAGSESVSLLEDGQKGIVILDRTPFYAESGGQVGDTGVISVAGGEFT 512 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 +T+ K F HH IV+ G + + TID R ++ NH+ATH+LH L +LG Sbjct: 513 VTNTTKLGNA-FAHHGIVQ-GRIGLNDKVEATIDDARRERIKKNHTATHILHETLRQLLG 570 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS + + LRFD +H + +T EL+ IE VND I N + T +M +DA A Sbjct: 571 EHVGQKGSLVQAERLRFDFSHFEAVTKEELREIERVVNDEIRCNFALSTELMAIDDAKAK 630 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY+D VRVV++ G +S LCGGTHV G+I L IVSES I AG+RR Sbjct: 631 GAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGVRR 685 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+TG A +++ Q++KL +A+ +K +V+ +V + ++ ++L+ K+ QLN Sbjct: 686 IEAVTGADAIAYVSEQEQKLNDVAAVVKADSASVLEKVTALLDKSKQLE----KQIAQLN 741 Query: 783 VEDLSC------HKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKE 833 + S + ++N + +I+ V +SK L+ ++D L+ KI SG+I L G++ + Sbjct: 742 DKLASAAGASLLDSVVEINGIKLLIANVKGTESKALRGMVDDLKNKIGSGVIAL-GVASD 800 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K S++ VT+DL R A +L A + GG GGGRP MAQ+GG A+ V Sbjct: 801 DKVSLIAGVTKDLTGRVKAGELVNHMASQV-GGKGGGRPDMAQAGGSEPENLTAALDSVT 859 Query: 894 SFL 896 ++ Sbjct: 860 AWF 862 >gi|259909418|ref|YP_002649774.1| Alanyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96] gi|224965040|emb|CAX56571.1| Alanyl-tRNA synthetase [Erwinia pyrifoliae Ep1/96] gi|283479495|emb|CAY75411.1| alaS [Erwinia pyrifoliae DSM 12163] Length = 876 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/906 (44%), Positives = 558/906 (61%), Gaps = 58/906 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y T Sbjct: 4 STAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F L Sbjct: 64 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIAFAWELLTSSQWFGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W+K G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYETDDEAFDIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NY+IDLF LI++ Q+TG N + RVI DH+RS +FLIADG++P Sbjct: 244 ITAVLQHVNSNYEIDLFAQLIKSVAQLTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG L+ L MG+A +L + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F KTL+RGL LLD L +L D L+G+ F+LYDT G P D+ D+ R L Sbjct: 362 TEEEQFAKTLERGLALLDEELENLQSD-TLDGETVFRLYDTFGFPADLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E+QR RAR S G G I A++F GY L+ Sbjct: 420 IDEAGFERAMEQQRQRARDAS-GFGCDYNNVIHIDQ-----ASEFKGYQQLQ-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +++ + AI G+ + +G++ +V D TPFYAE+GGQ+GDTG Sbjct: 466 ---------------LNAAITAIFVDGQAADTISAGREGVIVLDATPFYAESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ L +++ QK A+ I H + G LR + +D R ++ +NHSATHL Sbjct: 511 ELQGNSASLIVSNTQKYAQAI-GHSGKLATGELRVGERVAAQVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HVSQ GS + LRFD +H + +T E++ +E+ VN I +NLP+ T Sbjct: 570 LHAALRQVLGQHVSQKGSLVNDKYLRFDFSHFEAMTQQEIRQVEEIVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM E A A GA AL G KY+D VRV+S+ G S+ LCGGTH + TG+I L I S Sbjct: 630 IMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHATRTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q+++L ++ +K + N+ +V + + R L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGALAQLYSQNQQLADISHLVKANHSNLSEKVRALIDHARALEK 744 Query: 773 IHAKRKLQLNVED---LSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ LS IA + +S+V+ K L++++D L+ ++ S II+L Sbjct: 745 QLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++ + K S++ VT+DL DR A +L L+ KV GG GGGRP MAQ+GG + Sbjct: 805 ATVA-DGKVSLIAGVTKDLTDRIKAGELVGELAQKV--GGKGGGRPDMAQAGGTDAMALP 861 Query: 887 QAIAGV 892 A+AGV Sbjct: 862 AALAGV 867 >gi|238921100|ref|YP_002934615.1| alanyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146] gi|238870669|gb|ACR70380.1| alanyl-tRNA synthetase, putative [Edwardsiella ictaluri 93-146] Length = 875 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/909 (43%), Positives = 570/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGAQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M ETGPCGPC+ Sbjct: 124 PKEKLWVTVYESDDEAFDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGETGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G I GG PGS E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI + +V G+ + + RVI DH+RS +FL++DG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIAETARVIGVSDLSSKSL--RVIADHIRSCAFLVSDGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG E L+ L MG++ L Q + ++E+ L+ Sbjct: 302 SNEGRGYVLRRIIRRAVRHGHMLGAKEAFFYKLVKPLIAVMGASADALAQQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G PLD+ D+ R L Sbjct: 362 TEEEQFARTLERGLTLLDDELSTLDGD-TLDGETAFRLYDTYGFPLDLTADVCRERSLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E QR RAR S G G+ + S+ G+T F GY L ++D Sbjct: 420 VDEEGFERAMEAQRCRARESS-GFGAD-----YNSMIRVDGSTDFTGYHL------QQQD 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++V A+ GE V+ +G++ VV QTPFYAE+GGQ+GD G Sbjct: 468 -----------------ALVTALFHNGEAVDVLQAGEEGVVVLAQTPFYAESGGQVGDRG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + G R + D QK + I H V +G LR + ID R ++ +HSATHL Sbjct: 511 ELMAQGCRFVVEDTQKYGQAIG-HLGKVAQGSLRVGERVQAGIDGARRERIRQSHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL ++LG HV+Q GS ++ LRFD +H++ + +++ +ED VN I +NLP+ T+ Sbjct: 570 MHAALRSVLGEHVAQKGSLVSDGALRFDFSHAEAMKPRQIRQVEDIVNAQIRRNLPIDTQ 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E+A A GA AL G KY+ +VRV+S+ G S+ LCGGTH TG+I L IVS Sbjct: 630 EMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GDFSTELCGGTHAERTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 ES AG+RRIEA+TG++A + + + L+ AS +K +V ++ + E+ R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEQALLAMHQESDMLREAASLVKGDAQSVAEKIRAVMEKSRQLEK 744 Query: 772 LIHAKRKLQLNVEDLSCH-KIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827 +H + Q E S K +VN + ++S++D E L++++D L+ ++ S I++L Sbjct: 745 ALHQLKDQQAAQESASLSGKAVEVNGVKLLVSQLDGVEPKMLRTMVDDLKNQMSSCIVVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ K S++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + Q Sbjct: 805 A-TAEAGKVSLIAGVTKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDTAALPQ 862 Query: 888 AIAGVASFL 896 A+A VA ++ Sbjct: 863 ALASVADWV 871 >gi|145220|gb|AAA03208.1| alanyl-tRNA synthetase [Escherichia coli] Length = 876 Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/894 (44%), Positives = 556/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSS P DPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSRYPITDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTND-------NFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N NFW M TGPC PC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRINDNKGAPYASGNFWRMGGTGPCDPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQADVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HVS GS + LRFD +H++ + E++++ED VN +I +NLP+ T Sbjct: 570 MHAALRQVLGTHVSHKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTLIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + + ++L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K DVN + ++SE V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLGSTIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|237809468|ref|YP_002893908.1| alanyl-tRNA synthetase [Tolumonas auensis DSM 9187] gi|237501729|gb|ACQ94322.1| alanyl-tRNA synthetase [Tolumonas auensis DSM 9187] Length = 874 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/913 (43%), Positives = 560/913 (61%), Gaps = 61/913 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IRT FLE+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G + Y T Sbjct: 4 TTSEIRTAFLEYFRSQGHQVVDSSSLVPHNDPTLLFTNAGMNQFKDVFLGGDIRPYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AWD LTK L Q Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWDFLTKVLQLPQ 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L +TVY D+EA+ +W G+SAD+I+RI N DNFW M +TGPCGPC+EI Sbjct: 124 EKLLVTVYATDDEAYGIWANEIGVSADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+R+IEIWN+VFMQF +Q LPK S+DTGMG+ER++ Sbjct: 184 FYDHGADIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTLEPLPKPSVDTGMGIERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+FK LIQ + ++ G+ N + RVI DH+RS SFLI+DG++P+N Sbjct: 244 AIMQGVHSNYEIDIFKTLIQNAAKIVGVTDLENKSL--RVIADHIRSCSFLISDGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + R LG T+ L+ AL MG AYPEL + ++E L+ E Sbjct: 302 EGRGYVLRRIIRRAVRHGRKLGATDTFFYQLVGALVALMGEAYPELKSQQPVVERVLKLE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TLDRGL LL+ L LG + G V FKLYDT+G P D+ D++ RG ID Sbjct: 362 EEQFVRTLDRGLSLLEEELVRLGDVREIPGSVVFKLYDTYGFPADLTADVVRDRGYT-ID 420 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 +F Q +E+QR RA+ A + KI + + F GY +R Sbjct: 421 EAAFQQEMEKQRERAKDASHFAVDYNKQLKIEQT-------SDFCGY-----------ER 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG- 532 + ++ + AI ++V G + +V + TPFYAE+GGQ+GD G Sbjct: 463 TI------------ANTTITAIYLADQLVSTLKDGDQALIVLENTPFYAESGGQMGDAGL 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +GD + +TD K + I VH VE+G +T ++ +D R +++HSATHL Sbjct: 511 LRVGDAL-FAVTDTHKIGQAI-VHKGFVEQGSFKTGDTVEAIVDNTRRNATALHHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + PD LRFD +H + I A L+ IE +VN I +N+ + T+ Sbjct: 569 LHAALRNALGEHVAQKGSQVGPDRLRFDFSHFEAINPAALRQIEQSVNAEIRKNVLIDTQ 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ +DA SGA AL G KY D VRVV + G S+ LCGGTH TG+I I+S Sbjct: 629 LMSLDDAKTSGAMALFGEKYGDEVRVVKM-----GDFSTELCGGTHAKHTGDIGFFKIIS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 E+ + AG+RRIEA+ G+ A +H+ E+L AS +K +VV ++ ++ E R Sbjct: 684 ENGVAAGVRRIEAVAGEAALAHIHQLGEQLDEAASIVKADALSVVSKIRQMQERSRLLER 743 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825 +++ + AK Q + LS +I +N ++++ VD+K L++ MD L+ ++QS ++ Sbjct: 744 EIETLKAKLASQAGNDLLS--QIMQINGQQVLVAQVEGVDAKSLRTTMDDLKNRLQS-VV 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 ML+ + K S++ VT DL + A +L L A+ + GG GGGRP MAQ+GG + Sbjct: 801 MLLAAVNDGKVSLIAGVTADLTSKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDATAL 859 Query: 886 DQAIAGVASFLKK 898 A+ V S+L++ Sbjct: 860 PGALKSVQSWLEE 872 >gi|300718056|ref|YP_003742859.1| Alanyl-tRNA synthetase [Erwinia billingiae Eb661] gi|299063892|emb|CAX61012.1| Alanyl-tRNA synthetase [Erwinia billingiae Eb661] Length = 875 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/910 (44%), Positives = 559/910 (61%), Gaps = 58/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y T Sbjct: 4 STAEIRQAFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWELLTGAQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W+K G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYETDDEAFDIWEKEVGVPRERIIRIGDNKGGAYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+R+IEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRFIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NY+IDLF LI + +VTG + + RVI DH+RS +FLIADG++P Sbjct: 244 ITAVLQHVNSNYEIDLFARLIASVAEVTGATDLTSKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG L+ L + MGSA EL + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAQGSFFWKLVGPLISVMGSAGEELASQQSQVEQILK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F KTL+RGL LLD L L D L+G+ F+LYDT G P D+ D+ R L Sbjct: 362 TEEEQFAKTLERGLALLDEELEKLQGD-TLDGETVFRLYDTFGFPADLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E+QR RAR S G G+ ++ I A+ F GY+ L Sbjct: 420 IDEAGFEKAMEQQRQRAREAS-GFGADYSKVIQID-----AASAFKGYEQLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++S V AI G+ E V+GQ+ +V D+TPFY E+GGQ+GDTG Sbjct: 466 ---------------LNSTVTAIFVDGKPATEIVAGQEGVIVLDETPFYGESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D QK + I H + G +R L +D R ++ +NHSATHL Sbjct: 511 ELKSDAATFTVNDTQKYGQAI-GHTGTLAAGQIRIGDRLSAQVDQARRDRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + E++ +E+ VN + +NL + T Sbjct: 570 LHAALRQVLGHHVAQKGSLVNDKYLRFDFSHFEAMKPEEIRQVEEIVNAQVRRNLAIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM E A + GA AL G KY+D VRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMELEAAKSHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHASRTGDIGLFRILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + Q E+L+ +A +K + N+ +V + + R L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGALGLMYAQSEQLQEIAHLIKANNSNLNEKVRAMIDHVRGLER 744 Query: 773 IHAKRKLQLNVED---LSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ LS +I + +S V+ K L++++D L+ +++S II+L Sbjct: 745 ELQQLKDQQAAQESASLSSKAIEIKGTRLLVSELSNVEPKMLRTMVDELKNQLKSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++ + K S++ VT+DL DR A +L L+ +V GG GGGRP MAQ+GG + Sbjct: 805 ATVA-DGKVSLIAGVTKDLTDRVKAGELVGELAQQV--GGKGGGRPDMAQAGGTDAQALP 861 Query: 887 QAIAGVASFL 896 A+AGV S++ Sbjct: 862 AALAGVESWV 871 >gi|294634755|ref|ZP_06713284.1| alanine--tRNA ligase [Edwardsiella tarda ATCC 23685] gi|291091814|gb|EFE24375.1| alanine--tRNA ligase [Edwardsiella tarda ATCC 23685] Length = 875 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/910 (43%), Positives = 575/910 (63%), Gaps = 58/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTGAQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 Q +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PQEKLWVTVYESDDEAYNIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G I GG PGS E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI + +V G+ + + RVI DH+RS +FL++DG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIAETARVIGVDDLSSKSL--RVIADHIRSCAFLVSDGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + ++E+ L+ Sbjct: 302 SNEGRGYVLRRIIRRAVRHGHMLGAKESFFYKLVAPLIQVMGSAADELARQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G PLD+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDDELAQLDGD-TLDGETAFRLYDTYGFPLDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D + F +A+E QR RAR S G G+ + SL G+T F GY R + Sbjct: 420 VDEVGFEKAMEAQRRRARESS-GFGAD-----YNSLIRVEGSTDFTGYQ--RQQQM---- 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + A+ + G+ V+ +G++ VV DQTPFYAE+GGQ+GD G Sbjct: 468 -----------------ATITALFRNGQAVDALQAGEEGVVVLDQTPFYAESGGQVGDRG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + D QK + I H V +G L+ SL +ID R ++ ++HSATHL Sbjct: 511 ELSASGVSFVVDDTQKYGQAIG-HLGKVVQGHLQVGASLQASIDVARRDRIRLSHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL ++LG+HV+Q GS + LRFD +H + + +++ +E+ VN I +NLP+ T+ Sbjct: 570 MHAALRSVLGTHVAQKGSLVNDGYLRFDFSHPEAMKPQQIRQVEEIVNAQIRRNLPIETQ 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E+A A GA AL G KY+ +VRV+S+ G S+ LCGGTH TG+I L IVS Sbjct: 630 EMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GEFSTELCGGTHAERTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG++A + + + L+ AS +K +V ++ + E+ R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEQALQAMHQESDMLREAASLVKGDTQSVAEKIRGLMEKSRQLEK 744 Query: 773 IHAKRKLQLNVED---LSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826 + K Q ++ LS + +VN + ++S+ V+ K L++++D L+ ++ S I++ Sbjct: 745 ALQQLKDQQAAQESASLSAQAV-EVNGVKLLVSQLHGVEPKMLRTMVDDLKNQMGSCIVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++E K S++ V++DL + A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 804 LA-TAEEGKVSLIAGVSKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGSDVAALP 861 Query: 887 QAIAGVASFL 896 QA+A V+ ++ Sbjct: 862 QALASVSDWV 871 >gi|269101880|ref|ZP_06154577.1| alanyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP 102761] gi|268161778|gb|EEZ40274.1| alanyl-tRNA synthetase [Photobacterium damselae subsp. damselae CIP 102761] Length = 873 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 558/910 (61%), Gaps = 56/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR +L FF+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G EK Y T Sbjct: 4 STDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDVFLGLEKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT +L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIKYAWEFLTTVLELPE 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D+EAF++W K G+ AD+I+RI N DNFW M +TGPCGPC+EI Sbjct: 124 DRLLVTIYESDDEAFEIWNKEVGIPADRIVRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PG+ EE G+R+IEIWN VFMQ+ +Q LPK S+DTGMG+ER+A Sbjct: 184 FFDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQYNRQADGTMEPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+FK LI+ + + G Y+ + + RV+ DH+RS ++LIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFKTLIKDAADIIG--YDDLSNQSLRVVADHIRSCAYLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ L+ E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGTAGSELKKQQEMVEKVLKIE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E FG+TLDRGL +L+ L +L IL+G+ FKLYDT+G P D+ D+ RG ID Sbjct: 362 EENFGRTLDRGLTILNEALDNL-DGSILDGETVFKLYDTYGFPADLTNDVARERGFT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F A+EEQR RAR A G+ K+ T+F GY+ G Sbjct: 420 EEGFEAAMEEQRQRARDAGQFGVDYNNVIKV-------DADTEFKGYEATDG-------- 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 ++ AI + GE V+ +G++ +V DQTPFYAE+GGQ GDTG Sbjct: 465 ---------------EGVIVAIYRDGEEVDALAAGEEAIIVLDQTPFYAESGGQCGDTGA 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+ + D QK I H + G L+ L T+D+ R +S+NHSATHL+ Sbjct: 510 LAAAGVAFTVADTQKFGHAIG-HKGTLTEGALKVGDKLAATVDHVRRGAISLNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + PD LRFD +H + + +L+ +E VND I N + T I Sbjct: 569 HAALRKLLGEHVAQKGSLVKPDSLRFDFSHLEAVKPEQLREVERMVNDQIRLNHAIDTEI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D+VRV+S+ G S+ LCGG H TG+I L IVSE Sbjct: 629 MDIEAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHAKRTGDIGLFKIVSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AGIRRIEA+TG A L QDE+L A +K +VV +VE + ++L+ Sbjct: 684 GGIAAGIRRIEAVTGAAAIEALHAQDEQLAKAARLVKSDTASVVNKVEALVSHSKQLEKE 743 Query: 774 HAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828 + K +L ++ + ++ ++N + +I+++ D+K L+ ++D L+ ++ SGI++L Sbjct: 744 IQQLKDKLAAQEGAGLINQAQEINGVKVLIAKLDGADNKALRGMVDELKNQLSSGIVVLG 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S + K ++ VT+DL+ + A +L + A+ + GG GGGRP MAQ+GG + + A Sbjct: 804 NVS-DDKVGLIAGVTKDLIGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDASALPAA 861 Query: 889 IAGVASFLKK 898 + +++++ Sbjct: 862 LESAKAWIEE 871 >gi|52424403|ref|YP_087540.1| alanyl-tRNA synthetase [Mannheimia succiniciproducens MBEL55E] gi|59798509|sp|Q65VQ5|SYA_MANSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52306455|gb|AAU36955.1| AlaS protein [Mannheimia succiniciproducens MBEL55E] Length = 875 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/914 (43%), Positives = 559/914 (61%), Gaps = 59/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAQIRQSYLDFFHSKGHQVVESSSLVPHNDPTLLFTNAGMNQFKDVFLGMDKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIAYGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ AD IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKEVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE I GGLPG+ EE G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGEHIWGGLPGTPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER+A VLQ +NYDID+F+ LI+ Q+TG K N + RVI DH+RS ++LIADG+ Sbjct: 241 ERIAAVLQHVNSNYDIDIFQTLIKKVAQLTGEKDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A + Q + LIE+T Sbjct: 299 MPSNEGRGYVLRRIIRRAVRHGHLLGAKETFFYKLVPTLADVMEHAGEIVNQKRALIEKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL+LLD LS + KD +L+GDVAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLLLLDDALSQV-KDNVLSGDVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F + ++ QR+RA+A S G+ K+ G T+F GY Sbjct: 418 T-IDEKGFEREMQAQRARAQASSNFGVDYNNVIKV-------DGQTEFKGY--------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + T+ S+ V A+ G+ VE SG+ V+ D+TPFY E+GGQ+G Sbjct: 461 -------------ETTSLSSAKVVALFTDGKSVERVQSGENAVVILDRTPFYGESGGQIG 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D +I D QK + + H +E G L ++ +D + R ++ NHSA Sbjct: 508 DTGYIATDLAAFRINDTQKYGQ-VTGHIGQLESGSLSVGDTVSAQVDTERRLAVAANHSA 566 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS ++ LRFD + I+ ++ IE VN I +N+ V Sbjct: 567 THLLHAALRKVLGDHVAQKGSLVSESALRFDFIQPEAISKEQIIEIEAIVNRQIRENISV 626 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T +M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L Sbjct: 627 TTEVMDIEAAKQKGAMALFGEKYGDLVRVVGMTG-----FSIELCGGTHVKRTGDIGLFK 681 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 +VSES+I AGIRRIEA+T + A + L Q L A LK ++V +++++ ++ +K Sbjct: 682 VVSESAIAAGIRRIEAVTAENAINWLNNQQNILNQSADLLKSDTASLVEKIQQLQDKAKK 741 Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + K +Q DL S KI D++ + + +++K L+ ++D L+ ++ SG Sbjct: 742 AEKELQQLKEKAAMQAG-SDLAKSAVKINDISVIVQQLDGIETKSLRVMVDDLKNQLGSG 800 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+ + E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 VIVFASVV-EDKVNLIVGVTADLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPE 858 Query: 884 KADQAIAGVASFLK 897 A++ + +L+ Sbjct: 859 NVGAALSACSDWLE 872 >gi|293390902|ref|ZP_06635236.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951436|gb|EFE01555.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 874 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/914 (43%), Positives = 562/914 (61%), Gaps = 60/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FKN+F G EK Y Sbjct: 1 MKTTAQIRQSYLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHFGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + RL++TVY+ DEEA+K+W G++A++IIRI N DNFW M +TGPCGP Sbjct: 121 GLPKERLWVTVYETDEEAYKIWHDEIGIAAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NYDID+F+ LI + ++TG K N + RVI DH+RS ++LI DG+ Sbjct: 241 ERISAVLQHVNSNYDIDIFQKLIAKTAELTGEKDLTNKSL--RVIADHIRSCAYLIVDGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG TE L+P L M A E+ + + +E+ Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIEVMAQAGEEVKKHQATVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + K ++L+G+VAFKLYDT+G PLD+ D+ RG+ Sbjct: 359 LRLEEEQFARTLERGLTLLDEALAEV-KGKVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F + +E QR RA++ S G+ + G T+F GY Sbjct: 418 T-IDEAGFEREMENQRLRAQSASQFGMDYNNVIHV-------DGITRFEGY--------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + L + V A+ G+ V+ +GQ V+ D TPFYAE+GGQ+G Sbjct: 461 -TESETLAK-------------VTALFHDGKPVDTISAGQSAVVILDNTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G G+G + D QK + +F H + +G L S+ +D R+ +S+NHSA Sbjct: 507 DIGRLEGNGFNFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDEVRRQHISLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS ++ LRFD +PI+ A+L +E VN + N P+ Sbjct: 566 THLLHAALRQVLGEHVAQKGSLVSDALLRFDFAQHEPISKAQLAEVERIVNQQVRANNPI 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM E A A GA AL G KY+D+VRV+++ G S LCGG H TG+I L Sbjct: 626 KTDIMELEAAKAKGAMALFGEKYSDQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IV+E+++ AGIRRIEAITG+ A L Q L A LK ++ ++ + ++++K Sbjct: 681 IVTETAVAAGIRRIEAITGETAIEWLQNQQSLLNQSAELLKSDVNSITDKISLLQDKFKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + K LQ DL S KI V+ ++ + +++K L+S++D+L+ ++ S Sbjct: 741 VEKELQTLKEKAALQAG-NDLAQSAVKINGVSVIAQQLDGIEAKSLRSMVDSLKNQLGSA 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+ + E K ++++ VT+DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 800 VIIFASVIDE-KVNLIVGVTQDLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPE 857 Query: 884 KADQAIAGVASFLK 897 ++A++ + +LK Sbjct: 858 NVNKALSVCSDWLK 871 >gi|56460839|ref|YP_156120.1| alanyl-tRNA synthetase [Idiomarina loihiensis L2TR] gi|81599943|sp|Q5QUV7|SYA_IDILO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56179849|gb|AAV82571.1| Alanyl-tRNA synthetase [Idiomarina loihiensis L2TR] Length = 865 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/904 (43%), Positives = 570/904 (63%), Gaps = 52/904 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR FL +F + GHE +PS+S+IP NDPTL+FTN+GMVPFK++F G +K Y T Sbjct: 4 NSAQIRDAFLNYFAERGHEKVPSASMIPGNDPTLLFTNAGMVPFKDVFLGTDKRRYDKAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+C+RAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK++AIQ AWD LTKE L Sbjct: 64 SAQRCLRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKQAIQYAWDFLTKELKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L++TV+ ED+EA+ +W K G+ D+I RI DNFWSM +TGPCGPCSE+F+D GE Sbjct: 124 EKLWVTVFTEDDEAYDIWVKDIGVPEDRISRIGEKDNFWSMGDTGPCGPCSEVFYDHGEE 183 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + GG PG+ EE G+RYIEIWNLVFMQ+ +Q LP SIDTGMGLER++ ++Q Sbjct: 184 VWGGPPGTPEEDGDRYIEIWNLVFMQYNRQADGTLEPLPDPSIDTGMGLERISAIMQNVH 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+A+ ++ G N++ N RVI DH+RS SFLI DG++P+NEGRGY Sbjct: 244 SNYEIDLFQALIKAAAEIIGT----NDLDNKSLRVIADHIRSCSFLITDGVMPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LLG + L+ L +MG AYPEL Q K +I++ L E+++F Sbjct: 300 VLRRIIRRAVRHGHLLGAKDTFFFRLVDELARQMGEAYPELEQKKQIIKDALEREEQQFA 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL +L + L K ++ GDV FKLYDT+G P+D+ DI + L ID F Sbjct: 360 RTLERGLAILSDEIGEL-KGNVIPGDVVFKLYDTYGFPVDLTADIAREQELT-IDEQGFE 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+ EQR RA+ S G +++ K T F GYD V+ Q Sbjct: 418 QAMSEQRQRAQQASQ-FGMDYNQQLKSDNK-----TAFTGYD------------DVVGQA 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++L + G+ VE+ +G+ VV +TPFYAE+GGQ+GD G + +G Sbjct: 460 KVVEL-----------FKDGKPVEQLQAGENGIVVLSETPFYAESGGQIGDKGVLVANGP 508 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD Q + I HH + + + ++ S+ ID + R + NHSATHLLH AL Sbjct: 509 AFEVTDTQYIGKAI-AHHGVAKAAVKLSD-SVKAEIDSERRENIKRNHSATHLLHAALRN 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + D +RFD +H +P+T+ +L +E VN + NLP+ T++M ++A Sbjct: 567 LLGEHVTQKGSLVEADKMRFDFSHFEPVTTEQLAQLEREVNAQVRANLPLQTQLMAIDEA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 +GA AL G KY+++VRVV + G S LCGGTHV +TG+I L I SE I +G Sbjct: 627 KEAGAMALFGEKYDEQVRVVRM-----GDFSMELCGGTHVKATGDIGLFRITSEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIE +TG+ A + Q L+ +A LK +V +V+++ ++R+L+ + + + Sbjct: 682 VRRIEVVTGEAAVRYTQQQQSVLQQIAGELKTEPSSVAEKVQQLQHKFRELERKNEQLQQ 741 Query: 780 QLNVEDLS--CHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + + D+N + II+E+D K L+ ++D L+ ++ SGI++L G + Sbjct: 742 KLAQQAGGGLIAQAVDINGVKAIIAELDQADPKSLRGLVDDLKNQMGSGIVLL-GTANGD 800 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K S++ VT DL + A D+ +A V+ GG GGGRP MAQ+GG + ++A+A + Sbjct: 801 KVSLIAGVTTDLTSKVKAGDIVNQAANVV-GGKGGGRPDMAQAGGSLPEQLNEALATATT 859 Query: 895 FLKK 898 +L++ Sbjct: 860 WLQQ 863 >gi|261867354|ref|YP_003255276.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412686|gb|ACX82057.1| alanyl-tRNA synthetase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 874 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/914 (43%), Positives = 562/914 (61%), Gaps = 60/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FKN+F G EK Y Sbjct: 1 MKTTAQIRQSYLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHFGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + RL++TVY+ DEEA+K+W G+ A++IIRI N DNFW M +TGPCGP Sbjct: 121 GLPKERLWVTVYETDEEAYKIWHDEIGIVAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NYDID+F+ LI + ++TG K N + RVI DH+RS ++LI DG+ Sbjct: 241 ERISAVLQHVNSNYDIDIFQKLIAKTAELTGEKDLTNKSL--RVIADHIRSCAYLIVDGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A E+ + + +E+ Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGAAEAFFYKLVPTLIEVMAQAGEEVKKHQATVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + K ++L+G+VAFKLYDT+G PLD+ D+ RG+ Sbjct: 359 LRLEEEQFARTLERGLTLLDEALAEV-KGKVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F + +E QR RA++ S G+ ++ G T+F GY Sbjct: 418 T-IDEAGFEREMENQRLRAQSASQFGMDYNNVIRV-------DGITRFEGY--------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + L + V A+ G+ V+ SGQ V+ D TPFYAE+GGQ+G Sbjct: 461 -TESETLAK-------------VTALFHDGKPVDTISSGQSAVVILDNTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G G+G + D QK + +F H + +G L S+ +D R+++S+NHSA Sbjct: 507 DIGRLEGNGFNFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDEVRRQRISLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS ++ LRFD +PI+ A+L +E VN + N P+ Sbjct: 566 THLLHAALRQVLGEHVAQKGSLVSDALLRFDFAQHEPISKAQLAEVERIVNQQVRANNPI 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM E A A GA AL G KY+D+VRV+++ G S LCGG H TG+I L Sbjct: 626 KTDIMELEAAKAKGAMALFGEKYSDQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IV+E+++ AGIRRIEAITG+ A L Q L A LK ++ ++ + ++++K Sbjct: 681 IVTETAVAAGIRRIEAITGETAIEWLQNQQSLLNQSAELLKSDVNSITDKISLLQDKFKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + K LQ DL S KI V+ ++ + +++K L+S++D+L+ ++ S Sbjct: 741 VEKELQTLKEKAALQAG-NDLAQSAVKINGVSVIAQQLDGIEAKSLRSMVDSLKNQLGSA 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+ + E K ++++ VT+DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 800 VIVFASVVDE-KVNLIVGVTQDLTGKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPE 857 Query: 884 KADQAIAGVASFLK 897 ++A++ + +LK Sbjct: 858 NVNKALSVCSDWLK 871 >gi|58584618|ref|YP_198191.1| alanyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497910|sp|Q5GSS5|SYA_WOLTR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|58418934|gb|AAW70949.1| Alanyl-tRNA synthetase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 875 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/905 (43%), Positives = 552/905 (60%), Gaps = 78/905 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR F++FF +N H+ + SS LIP +DPTLMFTN+GMV FKNIFTG +K + + Sbjct: 3 LNEIRERFIKFFVRNNHKQVFSSPLIPEHDPTLMFTNAGMVQFKNIFTGIQKTDIKRAVS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW +T+E LD+ Sbjct: 63 SQKCLRVGGKHNDLENVGYTTRHHTFFEMLGNFSFGDYFKETAIEFAWKFITEELSLDKN 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL IT+Y D++++++W+K+SG S DKIIRI T+DNFWSM GPCGPCSEIF+D + Sbjct: 123 RLSITIYHTDDKSYEIWRKVSGFSNDKIIRIATDDNFWSMGNIGPCGPCSEIFYDYAK-- 180 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 + + +R +EIWNLVFM+F + + LPK IDTGMGLER+A V+Q +N Sbjct: 181 -----PNLQNDDRIVEIWNLVFMEFNKDEEGNLQKLPKKCIDTGMGLERVAAVMQNVYDN 235 Query: 244 YDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 YDIDLF LI S++ Y GN N H++I DHLR+++FLIA+G+LP NEGR Y+L Sbjct: 236 YDIDLFSALISKSQE-----YCGNVENKAAHKIIADHLRAAAFLIAEGVLPGNEGRNYIL 290 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356 RR++RRA+ Y LGY +PL+ + P L MG YPELI+AK LIE TL+SE+E Sbjct: 291 RRLIRRAVRYIHQLGYNDPLLHRIFPVLIDSTSSAYMGGVYPELIRAKSLIETTLKSEEE 350 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 F TL +G+ LL + L + L+G+ AFKLYDT+G PLDI DIL R + D Sbjct: 351 NFKDTLIKGINLLKKFTTDLKPGDTLSGESAFKLYDTYGFPLDITLDILKERKI-NFDQK 409 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ A+EEQ+ RARA G G + E+IWF+L +K+G T+F+GY+ +D KVL Sbjct: 410 GFDNAMEEQKERARAKWTGSGEKSIEQIWFNLIDKFGKTEFVGYEFSE-----VKDAKVL 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + + E+++ A G+K+ ++ D+TPFY E+GGQ+GDTG I Sbjct: 465 V----------------ILSSKNEVIDSAKEGEKITIILDKTPFYGESGGQVGDTGSFII 508 Query: 537 DGIRLQI-TDVQKK--------AEGI------------FVHHAIVERGILRTEMSLVLTI 575 I + T +QKK EGI ++H IV+ G + + + + Sbjct: 509 PSITPVLDTKIQKKNDRSCDRITEGIAIVENTNKVNDLYLHRCIVKSGSICKDDIVTAST 568 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D + R+ L NHSATHLLH AL ILG HV+Q GS I PD LRFD +H+ +T +L I Sbjct: 569 DKERRQNLRRNHSATHLLHFALRKILGDHVTQKGSLIAPDRLRFDFSHNTQVTRDQLSLI 628 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 ED VN +I +NL T+I + AI GA AL G KY D+VRVV++ S LCG Sbjct: 629 EDMVNSLIRENLSAFTKIQSMNQAIGEGAMALFGKKYGDQVRVVNIG------DSKELCG 682 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV TGEI L I++E SI +G+RRIEA+TGQ A + + L+ +A +K Sbjct: 683 GTHVERTGEIGLFKIITECSIASGVRRIEALTGQEAIDYARDNEINLRKIAELVKAPVNE 742 Query: 756 VVGRVEEIWEEYRKLQL-IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814 + R+ + +E ++ + I + K ++ E++ +I +NF+SH +++ + ++ Sbjct: 743 ITSRLSILNQERKESETKIKSLYKKLVSAENIKSIEINGMNFVSHSFTDIPANIVREF-- 800 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 LQ++ +I + EK +VLIV V++DL+D+ + +L + GG G Sbjct: 801 TLQQQKPKTVIAFTAM--EKNKTVLIVKVSKDLVDKISTKEL----VSTVTGGVCGENAE 854 Query: 874 MAQSG 878 + Q+G Sbjct: 855 LTQTG 859 >gi|310766672|gb|ADP11622.1| Alanyl-tRNA synthetase [Erwinia sp. Ejp617] Length = 876 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/906 (44%), Positives = 556/906 (61%), Gaps = 58/906 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F GQ+K Y T Sbjct: 4 STAEIRQAFLDFFQSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGQDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F L Sbjct: 64 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIAFAWELLTSSQWFGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA +W+K G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYETDDEALDIWEKEIGVPRERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQPDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NY+IDLF LI++ Q+TG N + RVI DH+RS +FLIADG++P Sbjct: 244 ITAVLQHVNSNYEIDLFAQLIKSVAQLTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG L+ L MG+A +L + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLVAPLIAVMGAAGDDLKSQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F KTL+RGL LLD L +L D L+G+ F+LYDT G P D+ D+ R L Sbjct: 362 TEEEQFAKTLERGLALLDEELENLQSD-TLDGETVFRLYDTFGFPADLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E+QR RAR S G G I A++F GY L+ Sbjct: 420 IDEAGFERAMEQQRQRARDAS-GFGCDYNNVIHIDQ-----ASEFKGYQQLQ-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +++ + AI G+ + +G++ +V D TPFYAE+GGQ+GDTG Sbjct: 466 ---------------LNAAITAIFVDGQAADTISAGREGVIVLDATPFYAESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ +++ QK A+ I H + G LR + +D R ++ +NHSATHL Sbjct: 511 ELQGNSASFIVSNTQKYAQAI-GHSGKLATGELRVGDRVAAQVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HVSQ GS + LRFD +H + +T E++ +E+ VN I +NLP+ T Sbjct: 570 LHAALRQVLGQHVSQKGSLVNDKYLRFDFSHFEAMTQQEIRQVEEIVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM E A A GA AL G KY+D VRV+S+ G S+ LCGGTH + TG+I L I S Sbjct: 630 IMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTELCGGTHATRTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q+++L ++ +K + N+ +V + + R L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGALAQLYSQNQQLADISHLVKANHSNLSEKVRALIDHARALEK 744 Query: 773 IHAKRKLQLNVED---LSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ LS IA + +S+V+ K L++++D L+ ++ S II+L Sbjct: 745 QLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPKMLRTMVDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++ + K S++ VT+DL DR A +L L+ KV GG GGGRP MAQ+GG + Sbjct: 805 ATVA-DGKVSLIAGVTKDLTDRIKAGELVGELAQKV--GGKGGGRPDMAQAGGTDAMALP 861 Query: 887 QAIAGV 892 A+AGV Sbjct: 862 AALAGV 867 >gi|317484483|ref|ZP_07943393.1| tRNA synthetase class II [Bilophila wadsworthia 3_1_6] gi|316924259|gb|EFV45435.1| tRNA synthetase class II [Bilophila wadsworthia 3_1_6] Length = 884 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/902 (44%), Positives = 535/902 (59%), Gaps = 40/902 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLE+F+K+GH + SSSLIP +DP+L+FTN+GMV FK IF GQEK Y Sbjct: 1 MLTANEIRHRFLEYFKKHGHTEVASSSLIPRDDPSLLFTNAGMVQFKKIFCGQEKRDYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDLDNVGRT RHHTFFEMLGNFSFG YFKE AI+ AW +T++ L Sbjct: 61 ATTSQKCLRVGGKHNDLDNVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFITEDLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLYITVY +D+EAF+LW+K++G++ ++I R+ DNFWSM +TGPCGPCSEI FDQG Sbjct: 121 PKDRLYITVYKDDDEAFELWQKVAGVAPERIFRLGEKDNFWSMGDTGPCGPCSEIHFDQG 180 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 C P G + +R++EIWNLVFMQFEQ R LP+ SIDTGMGLER+A V Sbjct: 181 ADMACGPDCGIGKC-DCDRFLEIWNLVFMQFEQLADGSRVPLPRPSIDTGMGLERIAGVC 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295 Q +NYD DLF+ I ++ G++Y N N RVI DH R+ +F+IADGILP+NE Sbjct: 240 QGVRSNYDTDLFQVFINYMAELAGVRYRDNADNDTALRVIADHSRAIAFMIADGILPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + RL+G EP + + MG YPEL + R E+ Sbjct: 300 GRGYVLRRLIRRAFRFGRLMGMQEPFLYKTALKVVEVMGEDYPELRARADFMARVTREEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF TLD+GL +L+ + L ++I+ G+ AFKLYDT+G PLDI+ D+ RG Sbjct: 360 ERFSSTLDKGLSMLEEEMDALADKGEKIIPGETAFKLYDTYGFPLDIVNDVAEKRGFKA- 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN+ + +Q+ RARA G G + L E ++F GY L Sbjct: 419 DEAGFNEYMHQQKQRARAAWKGSGEKDIASRFQGLLEDGLKSEFFGYTAL---------- 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 GV +V + G VE SG VV DQTPFY +GGQ GDTG Sbjct: 469 ------------TGVGRVVALLDGDGLPVEALPSGSLGYVVTDQTPFYGASGGQCGDTGL 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++ D K + + VHH V+ G L ++ +VLT+ R + NH+ THLL Sbjct: 517 LTAPAGSAKVLDTLKPSADLTVHHIEVDGGTLLSDQEVVLTVTESIRLDAARNHTCTHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +TPD LRFD +H P+T EL ++E +VN I + P+ ++ Sbjct: 577 HAALRRVLGDHVRQAGSLVTPDRLRFDFSHIAPMTPEELAAVERDVNAAIMADYPLTAKL 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++ AI GA AL G KY D VRVV++ D S LCGGTH+ STG+ I+SE Sbjct: 637 MGQQAAIDMGAMALFGEKYGDTVRVVTIGNPD-HTESVELCGGTHLHSTGQAGSFVILSE 695 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG RRIEA TG A H E+L LA+ LK G + +++ + +E R L+ Sbjct: 696 SGIAAGTRRIEAATGWNALKHARAMSEELHQLAAMLKTQPGGLAAKLDGLQKENRGLRKD 755 Query: 774 HAK---RKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIML 827 K + DL K+ ++N + + +++D+ K ++ +MD ++ K+ SG+ + Sbjct: 756 LEKAAAQAASGQGGDL-MSKVVEINGVKVLAAKLDASNIKAMRELMDDIRSKMPSGVACI 814 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 E K S+++ V++DL RF A L + A + G GGGRP AQ+GG N D+ Sbjct: 815 AAPVDEGKVSMILYVSKDLHGRFTAPALIKEVAAPI-AGSGGGRPDQAQAGGTNPAGIDE 873 Query: 888 AI 889 A+ Sbjct: 874 AM 875 >gi|51244680|ref|YP_064564.1| alanyl-tRNA synthetase [Desulfotalea psychrophila LSv54] gi|59798523|sp|Q6AQ16|SYA_DESPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|50875717|emb|CAG35557.1| probable alanyl-tRNA synthetase [Desulfotalea psychrophila LSv54] Length = 882 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/910 (43%), Positives = 573/910 (62%), Gaps = 51/910 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR+ FLE+F+ NGH + SSSL+P +DPTL+FTN+GMV FK +F G +K Y T Sbjct: 4 NEIRSRFLEYFKGNGHTVAESSSLVPKDDPTLLFTNAGMVQFKRVFMGDDKRGYVRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+LAW+ LT E L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIRLAWNFLTVELGLPAEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECI 183 ++++V+++D+EAF LW+K+ L +I+R+ DNFW+M +TGPCGPCSEI DQG Sbjct: 124 MWVSVFEDDDEAFALWEKVEDLPKGRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGVGSS 183 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 P P + + +R++E+WNLVFMQF + LP+ SIDTGMGLER+A VLQ K Sbjct: 184 PCDNPNCAVGCDCDRFLELWNLVFMQFNRAEDGSLTALPRPSIDTGMGLERVAAVLQGKF 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD DLF +I E ++G+KY + RVI DH R++SFL+ADG+LP+NEGRGY Sbjct: 244 NNYDSDLFAPIIAVLEDISGVKYGAAADTDTAIRVIADHARATSFLVADGVLPSNEGRGY 303 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRA+ Y + LG +P M + A+C EM +AYP+L+ L+E+ + +E+ERF Sbjct: 304 VLRRIMRRAVRYGKKLGLEKPFMDRVTKAVCAEMQNAYPQLVATAALLEKVVNNEEERFR 363 Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL+ GLV LD +S L G D +++G FKLYDT G P DI++DI RG+ G D Sbjct: 364 ETLEHGLVQLDEKISQLLTSGGDAVIDGPFIFKLYDTFGFPFDIVRDIALERGV-GFDEA 422 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+ EQR+++RA G G ++ +L + +F+GY+ L Sbjct: 423 GFATAMAEQRAKSRASRKGEGVKLHDEGVKALADAGKKAEFLGYEGLE------------ 470 Query: 477 CQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S+V+ ++ +QG VE+ V+G+K V TPFYAEAGGQ+GD G Sbjct: 471 -----------ADSVVEGLLSEQGSGVEKLVAGEKGRVFVAATPFYAEAGGQMGDRGSVR 519 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G + + Q + G+ +H +VE G L + + L +D + R+ + NHSATHLL Sbjct: 520 WQGGQASVYATQAEGTGLILHDLLVEEGELSLGLEVTLQVDDEERKATASNHSATHLLQA 579 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++LG HV Q+GS + P+ LRFD T+ +T+AE+ +E VN+ I N + T +++ Sbjct: 580 ALISVLGDHVKQSGSLVGPERLRFDFTNFSQLTAAEIAQVETLVNEQIRNNAVIATDVLS 639 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +++AIA GA AL G KY+D VRVVS+ G +S LCGGTHV +TGEI L I+SES Sbjct: 640 KQEAIAGGATALFGEKYDDDVRVVSM-----GDYSRELCGGTHVGATGEIGLFVILSESG 694 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA+TG+ A +++ G+ LA L G++V +VE + ++ + A Sbjct: 695 IAAGVRRIEALTGRAALAYVQGRLSTGNELADLLSCKSGDLVPKVESLLTAVKEGEKRVA 754 Query: 776 KRKLQL---NVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829 + QL ++DL + + V + +++EV ++K L+ + D ++ ++SG I ++G Sbjct: 755 QLAGQLASSGLDDLLNNALT-VAGIKVVVAEVPLENAKALRELGDKVRDNLESG-IAVIG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQ 887 + K ++L +VT+DL+DR A R+ ++V + GG GGGRP MAQ+GG +K + Sbjct: 813 GAVGGKVALLAIVTKDLVDRIQA---GRIVSEVSGIVGGKGGGRPDMAQAGGTMPDKLSE 869 Query: 888 AIAGVASFLK 897 AIA V + ++ Sbjct: 870 AIASVPAIIE 879 >gi|330428621|gb|AEC19955.1| alanyl-tRNA synthetase [Pusillimonas sp. T7-7] Length = 873 Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/908 (43%), Positives = 547/908 (60%), Gaps = 55/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL FF+ GH+++PSSSL+P NDPTL+FTNSGMV FK++FTG+E Y T+ Sbjct: 4 SEIRQKFLSFFESKGHQVVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKETRPYSRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT + L + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQNAWELLTTVYQLPAEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ A++I+RI N DNFW MA+TGPCGPCSEIF+ Sbjct: 124 LWVTVYQEDDEAYDIWAKEIGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G + GG PGS EE G+RYIEIWNLVFMQFE+ +LPK +DTGMGLER+A V Sbjct: 184 DHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMPLLPKPCVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P+NEG Sbjct: 244 LQHVHSNYEIDLFQSLIKAAARETGISDLANNSL--KVIADHIRACSFLIVDGVIPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG + L+ L EMG AYPEL+ + IE+ L+ E+E Sbjct: 302 RGYVLRRIVRRALRHGHKLGQSGVFFHRLVKDLVAEMGQAYPELVAQQARIEQVLKQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF +TL+ G+ +LD L+ + + +L+G F LYDT+G P+D+ DI C +D+ Sbjct: 362 RFSETLENGMKILDAALAAVPEKGMLDGQTLFTLYDTYGFPVDLTADI-CREREVQVDMD 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+ QR +ARA E + +S E T+F GYD L+ Sbjct: 421 GFEVAMNHQREQARAAG---KFKAAEGLSYSGVE----TRFDGYDQLQS----------- 462 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V A+ G VE +GQ+ VV D TPFYAE+GGQ+GD G Sbjct: 463 ------------QGTVTALYIDGTQVESVSAGQQAIVVLDATPFYAESGGQVGDAGILQA 510 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G R + D QK +F HH + G+L ++ +D R + NHSATHL+H A Sbjct: 511 NGARFAVADTQKIQNSVFGHHGEMLEGVLAVGDTVDAQVDKARRARTVRNHSATHLMHKA 570 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LGSHV Q GS + PD RFD H P+T+ ++ +E VN + N ++M+ Sbjct: 571 LRQVLGSHVQQRGSLVDPDKTRFDFAHDAPMTADQIAQVERIVNAEVLNNHATQAQLMSY 630 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DA+ GA AL G KY D VRV+ + + S LCGGTHV+ TG+I L IVSE + Sbjct: 631 DDAVQGGAMALFGEKYGDTVRVLDIGF------SRELCGGTHVARTGDIGLFKIVSEGGV 684 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 AG+RR+EAITG A + + ++ L A LK ++V RV + + + L+ L Sbjct: 685 AAGVRRVEAITGDNAVAWVQQINDTLVQAAGLLKTQPADLVERVALMQTQAKALERDLDR 744 Query: 775 AKRKLQLNV-EDLSCHKI---ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL + DL+ I D + +S VD K L+ ++D L+ K++S +++L + Sbjct: 745 LKSKLAASAGNDLASQAIVLRGDAKLLVASLSGVDPKALRGMIDQLKDKLKSAVVLLAAV 804 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + K S+ VT DL + A DL + A + GG GGGRP MA GG + A A Sbjct: 805 A-DDKISLAAGVTGDLASQVKAGDLVGMVAAQV-GGKGGGRPDMAMGGGTDVGALPAATA 862 Query: 891 GVASFLKK 898 GV +++++ Sbjct: 863 GVEAWVRE 870 >gi|315635122|ref|ZP_07890400.1| alanine--tRNA ligase [Aggregatibacter segnis ATCC 33393] gi|315476084|gb|EFU66838.1| alanine--tRNA ligase [Aggregatibacter segnis ATCC 33393] Length = 874 Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/915 (43%), Positives = 569/915 (62%), Gaps = 62/915 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FKN+F G EK Y Sbjct: 1 MKTTAQIRQSYLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKNVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIHYGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + RL++TVY+ D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGP Sbjct: 121 GLPKERLWVTVYETDDEAYNIWHKEIGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NYDID+FK LI ++TG K N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYDIDIFKTLIAKVAELTGEKDLANKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG TE L+P L M A E+ + + +E+ Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIDVMAEAGEEVKKQQATVEKF 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+++ K+ +L+G+VAFKLYDT+G PLD+ D+ RG+ Sbjct: 359 LRLEEEQFARTLERGLTLLDEALANV-KENVLSGEVAFKLYDTYGFPLDLTADVCRERGI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A ID + F + +E QR RA++ S G+ + ++ G T+F GY Sbjct: 418 A-IDEVGFEREMELQRVRAQSASQFGMDYNSVIRV-------DGTTRFEGY--------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + L + V A+ +G VE +GQ V+ D TPFYAE+GGQ+G Sbjct: 461 -TESETLAK-------------VTALFHEGNPVESISAGQSAVVILDNTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G G+G + D QK + +F H + +G L S+ +D R+++S+NHSA Sbjct: 507 DIGRLEGNGFCFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDDVRRQRISLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS ++ LRFD + I+ A+L +E VN + N P+ Sbjct: 566 THLLHAALRQVLGEHVAQKGSLVSDTLLRFDFAQHEAISKAQLAEVERIVNQQVRANNPI 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM E A A GA AL G KY+++VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMELEAAKAKGAMALFGEKYSEQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IV+E+++ AGIRRIEAITG+ A L Q L A LK +V ++ + ++Y+K Sbjct: 681 IVTETAVAAGIRRIEAITGETAIEWLQHQQTLLNQSAELLKSDVNSVTDKISLLQDKYKK 740 Query: 770 ----LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQS 822 LQ + K LQ DL+ + ++N +S I+ ++D +K L++++D+L+ ++ S Sbjct: 741 VEKELQTLKEKAALQAG-NDLAKSAV-EINGVSVIVQQLDGIEAKSLRAMVDSLKNQLGS 798 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++ + ++K ++++ VT+DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 799 AVVVFAS-ALDEKVNLIVGVTQDLTAKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTEP 856 Query: 883 NKADQAIAGVASFLK 897 ++A++ + +LK Sbjct: 857 QNINKALSVCSDWLK 871 >gi|91792571|ref|YP_562222.1| alanyl-tRNA synthetase [Shewanella denitrificans OS217] gi|122968878|sp|Q12PX7|SYA_SHEDO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91714573|gb|ABE54499.1| alanyl-tRNA synthetase [Shewanella denitrificans OS217] Length = 874 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/908 (42%), Positives = 556/908 (61%), Gaps = 58/908 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R+ FL +F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y + Sbjct: 5 TAKLRSAFLAYFETQGHQVVDSSSLVPHNDPTLLFTNAGMNQFKDVFLGMDKRSYSRAVS 64 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW LT+ L Sbjct: 65 SQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFAWTFLTETLKLPTE 124 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 RL +T+Y+ D+EAF+LW K G++A+ IIRI N DNFW M +TGPCGPCSEIF Sbjct: 125 RLCVTIYETDDEAFELWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCSEIF 184 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q LPK S+DTGMG+ER+A Sbjct: 185 YDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGAMLPLPKPSVDTGMGIERIAA 244 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 ++Q +NY+ID+FK LI + ++ G+ N + RVI DH+RS +FLIADG++P+NE Sbjct: 245 IMQGVHSNYEIDIFKQLIAKTAEIIGVSDLENKSL--RVIADHIRSCAFLIADGVMPSNE 302 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG T+ L+P L + MG A L++ ++++E+ L++E+ Sbjct: 303 GRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLISVMGDAAKGLVETQVIVEKALKAEE 362 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E+F +TL+RGL LLD L+ L ++L+GD AFKLYDT+G P+D+ D+ R + +D Sbjct: 363 EQFARTLERGLGLLDNALNEL-SGKVLDGDTAFKLYDTYGFPVDLTADVCRERDIT-VDE 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A+ EQRSRA+A G+ +++ + TQF GY L G Sbjct: 421 AGFEAAMAEQRSRAQAAG-NFGADYNKQLIIDEE-----TQFCGYKGLSG---------- 464 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V A+ G+ V E GQ VV + TPFYAE+GGQ+GD G Sbjct: 465 -------------EANVVALYLDGQAVNEVTQGQDAVVVLNNTPFYAESGGQVGDKGVLS 511 Query: 536 GDGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 GI +TD QK +A G H V G ++ L ++ R++ +NHS THLL Sbjct: 512 AQGINFSVTDTQKFGQATG---HQGKVLEGSIKVGTKLAAEVNKDLRQRTELNHSVTHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+HV+Q GS + P+ LRFD H + + +AELK +E+ VN I N + T Sbjct: 569 HAALRQVIGTHVTQKGSLVNPERLRFDFAHFEGVKAAELKQVEELVNAQIRCNHELNTAE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A GA AL G KY+++VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 629 MAIDEAKEKGAMALFGEKYDEKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + I AG+RRIEA+TG A +++ Q L A LK +VV +++ ++ ++L + Sbjct: 684 AGIAAGVRRIEAVTGAAAMAYVAEQQAMLDEAAGLLKSDSASVVAKLKAQLDKTKQLEKE 743 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLV 828 L K KL D+N + ++ + VD L+ + D L++K++S II+L Sbjct: 744 LSQLKDKLAAAASADMAGDAQDINGVKVLVKKLEGVDPGSLRGLQDELKQKLKSAIILL- 802 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G +K+ K +++ V+ DL + A +L + A+ + GG GGGRP MAQ+GG D A Sbjct: 803 GTAKDGKVNLIAGVSNDLTAKVKAGELVAMVAQQV-GGKGGGRPDMAQAGGTQVENLDAA 861 Query: 889 IAGVASFL 896 +A ++++ Sbjct: 862 LASASTWI 869 >gi|288940831|ref|YP_003443071.1| alanyl-tRNA synthetase [Allochromatium vinosum DSM 180] gi|288896203|gb|ADC62039.1| alanyl-tRNA synthetase [Allochromatium vinosum DSM 180] Length = 867 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/893 (44%), Positives = 543/893 (60%), Gaps = 48/893 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+ + +R +FL++F++ HE + SS LIP NDPTL+FTN+GMV FK+ F G+E+ Sbjct: 1 MTTSAELRASFLDYFEQRQHERVASSPLIPANDPTLLFTNAGMVQFKDAFLGRERRASNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT+ L Sbjct: 61 AVSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIEYAWDYLTRVLAL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 RL++TV++ED+EA +W K G+ + R DNFWSM +TGPCGPCSEIF+D Sbjct: 121 PPERLWVTVFEEDDEAAGIWLKEIGVDPQRFSRCGAKDNFWSMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E+G+RY+EIWNLVFMQF + LP+ S+DTGMGLER+A V+Q Sbjct: 181 PAIPGGPPGSPDEDGDRYVEIWNLVFMQFNRDADGNMTPLPRPSVDTGMGLERLAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+HLI+A+ Q TG + + RVI DH+RS++FLI DG+ P NEGRGY Sbjct: 241 VHSNYEIDLFRHLIEAAAQATGCTDLADKSL--RVIADHIRSTAFLITDGVTPGNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRA+ + LG + P L+ L EMG AYPEL ++ +E ++ E+ERF Sbjct: 299 VLRRIMRRAIRHGYRLGCSTPFFHTLVEPLAREMGDAYPELRASQSHVERLVKLEEERFA 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+ G+ LLD ++ L D+I G+ FKLYDT+G P+D+ DI RGL +D+ F Sbjct: 359 ETLEHGMRLLDEAIADLSGDQI-PGETVFKLYDTYGFPVDLTADIARERGLT-LDVAGFE 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+E Q+ RARA S GS T I G T F GYD ++ Sbjct: 417 QAMERQKERARAASQ-FGSAQTLDIQIQ-----GETDFCGYDRVQ--------------- 455 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + A+ + GE + +G++ V+ D++PFY E+GGQ+GD G + Sbjct: 456 --------EEATIVALYRGGESCDALEAGEEGLVILDRSPFYGESGGQVGDRGWLNTETA 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R + D QKK +G+ VH VE G L + +D RR ++NHSATHLLH AL Sbjct: 508 RFGVQDTQKKGDGVLVHVGRVEEGALTVGDRVDARVDADRRRATALNHSATHLLHAALRE 567 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS + P+ LRFD +H +P++ +L +IE VN + N V TRIM+ EDA Sbjct: 568 VLGPHVQQKGSLVGPERLRFDFSHFEPVSREQLLTIERMVNREVRANHLVETRIMSLEDA 627 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 ASGA AL G KY D+VRV+ + G S+ LCGGTHV + G+I L+ IVSE+ I AG Sbjct: 628 KASGAMALFGEKYADQVRVLRM-----GEFSTELCGGTHVKAVGDIGLIKIVSETGIAAG 682 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777 +RRIEAITG A + +E+L LA LK + +V RV ++ + R+L ++ K Sbjct: 683 VRRIEAITGASALEWVEADEERLLRLAGLLKGGREDVDERVTQLIDRARRLEKEIEQLKA 742 Query: 778 KLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K + +DL+ I + ++ + D K L+ +D L+ K+ S +++L + Sbjct: 743 KAASSAGQDLAAQAIDIQGIKTLAARLDGADPKSLRVTLDQLKDKLGSAVVVLA-TESDG 801 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG--PNGNKA 885 K S++ VT+DL DR A DL R A+ + GG GGGRP MAQ+GG P G A Sbjct: 802 KVSLVAGVTKDLTDRLKAGDLIREVAEKV-GGKGGGRPDMAQAGGNDPAGLPA 853 >gi|116689431|ref|YP_835054.1| alanyl-tRNA synthetase [Burkholderia cenocepacia HI2424] gi|116647520|gb|ABK08161.1| alanyl-tRNA synthetase [Burkholderia cenocepacia HI2424] Length = 897 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 546/910 (60%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 26 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 85 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 86 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 145 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 146 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 205 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 206 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 265 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 266 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 323 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+ Sbjct: 324 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 383 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 384 ERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 442 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 443 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 490 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 491 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 533 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID Q R + NHSATHL+ Sbjct: 534 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 593 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VN+ I N P + R+ Sbjct: 594 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 653 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV E Sbjct: 654 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 707 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L + Sbjct: 708 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEKE 767 Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D + +A V ++ + D+K L+ +D L+ K++S I+L Sbjct: 768 LGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 827 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 828 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 885 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 886 LAGVKGWVEE 895 >gi|311278355|ref|YP_003940586.1| alanyl-tRNA synthetase [Enterobacter cloacae SCF1] gi|308747550|gb|ADO47302.1| alanyl-tRNA synthetase [Enterobacter cloacae SCF1] Length = 875 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/894 (44%), Positives = 559/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + F L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKYAWELLTGDNWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA +L + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLVEVMGSAGDDLKRQQAQVEQILK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I GA++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V +GQ V+ DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFVDGKAVNSINAGQDAVVILDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++D QK + I H + G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFGFAVSDTQKYGQAIG-HLGKLSNGSLKVGDAVQADVDEVRRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NLPV T Sbjct: 570 MHAALRDVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLPVETH 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M EDA A GA AL G KY+DRVRV+S+ G S+ LCGGTH S TG+I L I S Sbjct: 630 VMELEDAKAKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L + + L +A LK N+ +V + E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIASLHAESDLLSDVAQLLKGDSHNLADKVRTVLERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K ++N + ++SE V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQAAAQESASLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|254245667|ref|ZP_04938988.1| Alanyl-tRNA synthetase, class IIc [Burkholderia cenocepacia PC184] gi|124870443|gb|EAY62159.1| Alanyl-tRNA synthetase, class IIc [Burkholderia cenocepacia PC184] Length = 897 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/911 (42%), Positives = 544/911 (59%), Gaps = 55/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y T Sbjct: 25 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRAT 84 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 85 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPK 144 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EI Sbjct: 145 DKLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEI 204 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 205 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLA 264 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P N Sbjct: 265 AVLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGN 322 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E Sbjct: 323 EGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQE 382 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 383 EERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT- 441 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 442 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDD 489 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 490 AKVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQG 532 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G L+ L ID Q R + NHSATHL Sbjct: 533 VLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHL 592 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VND I N P + R Sbjct: 593 MHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIVR 652 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV Sbjct: 653 VMPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVV 706 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L Sbjct: 707 EGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEK 766 Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K KL + D + I V ++ + D+K L+ +D L+ K++S I+L Sbjct: 767 ELGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 826 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 827 AAVEG-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPG 884 Query: 888 AIAGVASFLKK 898 A+AGV ++++ Sbjct: 885 ALAGVKGWVEE 895 >gi|325529341|gb|EGD06275.1| alanyl-tRNA synthetase [Burkholderia sp. TJI49] Length = 874 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDQRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 123 KLWVTVYQEDDEAYDIWAKDVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 183 YDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTETSDLNNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHQLVADLVAEMGVAYPELKEAEQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYVDGSAVNEVKTGQDAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID R + NHSATHL+ Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + D RFD H+ P++ E++ +E VND I N P + R+ Sbjct: 571 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPLSDDEIRRVEQIVNDEILANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHVS TG+I L IV E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGLFKIVME 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744 Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LSALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|261342139|ref|ZP_05969997.1| alanine--tRNA ligase [Enterobacter cancerogenus ATCC 35316] gi|288315472|gb|EFC54410.1| alanine--tRNA ligase [Enterobacter cancerogenus ATCC 35316] Length = 875 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/894 (44%), Positives = 566/894 (63%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EAF +W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAFDIWEKEVGIPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF LI+A +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYEIDLFSTLIKAVAEVTGATDLNNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L K + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDDELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFKGYDAL--------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +LT V+ A+ G+ V+ +GQ+ V+ D+TPFYAE+GGQ+GD G Sbjct: 465 ----------ELTGNVT----ALFVDGKAVDSISAGQEAVVILDKTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+G ++D QK + I H + G L+ + +D R ++ +NHSATHL Sbjct: 511 ELKGNGFSFSVSDTQKYGQAIG-HQGKLVSGSLKVGEGVQANVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H + + +E++++ED VN I +NLP+ T Sbjct: 570 MHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY++RVRV+S+ G S+ LCGGTH S TG+I L I+S Sbjct: 630 IMDLEAAKNKGAMALFGEKYDERVRVLSM-----GDFSTELCGGTHASRTGDIGLFRILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V + R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEAAIASLHAQSDQLHDIAQLLKGDSQNLGEKVRVALDRTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+ + ++SE V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQAAAQESASLSSKAVDIKGVKLLVSELAGVEPKMLRTMVDDLKNQLGSAVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|170732737|ref|YP_001764684.1| alanyl-tRNA synthetase [Burkholderia cenocepacia MC0-3] gi|205830047|sp|B1K026|SYA_BURCC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169815979|gb|ACA90562.1| alanyl-tRNA synthetase [Burkholderia cenocepacia MC0-3] Length = 874 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID Q R + NHSATHL+ Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VND I N P + R+ Sbjct: 571 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEKE 744 Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D + I V ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AVEG-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|205830048|sp|A0K6N4|SYA_BURCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID Q R + NHSATHL+ Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VN+ I N P + R+ Sbjct: 571 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEKE 744 Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D + +A V ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AVEG-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|134295482|ref|YP_001119217.1| alanyl-tRNA synthetase [Burkholderia vietnamiensis G4] gi|205830008|sp|A4JDM9|SYA_BURVG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|134138639|gb|ABO54382.1| alanyl-tRNA synthetase [Burkholderia vietnamiensis G4] Length = 874 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDQRPYTRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGPC+EI Sbjct: 122 DKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++LI+A+ +VT NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQNLIKAAARVTETADLNNNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 360 EERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 419 VDEPAFDDAMARQREQARAAG-------KFKATQGLEYTGAKTTFHGYE-----EIAFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVV-----------------ALYVEGSSVGEVKAGQDAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G L+ L ID Q R + NHSATHL Sbjct: 510 VLANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VND I N P + R Sbjct: 570 MHKALREVLGAHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV Sbjct: 630 VMPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVQRTGDIGLFKIVV 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K KL + D + +V ++ + D+K L+ +D L+ K++S I+L Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVFVLAATLDGADAKTLRETVDKLKYKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG Sbjct: 804 AAVEG-GKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPG 861 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 862 ALAGVKGWIE 871 >gi|212634216|ref|YP_002310741.1| alanyl-tRNA synthetase [Shewanella piezotolerans WP3] gi|212555700|gb|ACJ28154.1| Alanyl-tRNA synthetase [Shewanella piezotolerans WP3] Length = 874 Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/893 (43%), Positives = 559/893 (62%), Gaps = 62/893 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G++K Y T+ Sbjct: 5 TAALRSAFLEYFRTNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGEDKRNYTRATS 64 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+ LTKE L + Sbjct: 65 SQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAINFAWNFLTKELKLPKE 124 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 RL +T+Y+ D EA+ +W K G++ + IIRI N DNFW M +TGPCGPC+EIF Sbjct: 125 RLCVTIYETDNEAYDIWSKKVGVAPENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEIF 184 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D GE I GG PG+ EE G+R+IEIWN+VFMQ+ +Q+ LPK S+DTGMG+ER+A Sbjct: 185 YDHGEHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSDGAMNPLPKPSVDTGMGIERIAA 244 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 ++Q +NY+ID+F+ LI+ + ++ G+ N + RVI DH+RS +FLIADG++P+NE Sbjct: 245 IMQGVHSNYEIDIFQALIKKTAEILGVTDLENKSL--RVISDHIRSCAFLIADGVMPSNE 302 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG T L+P L MG A L+ + ++E++L++E+ Sbjct: 303 GRGYVLRRIIRRAVRHGNKLGATSSFFYKLVPTLIEVMGDAAKGLVATQAIVEKSLKAEE 362 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E+F +TL+RGL +LD LS L K ++L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 363 EQFARTLERGLGILDNALSGL-KGDVLDGETAFKLYDTYGFPVDLTADVCRERDIT-VDE 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIW---FSLKEKYGATQFIGYDLLRGSKFMKED 472 F A+ EQRSRA+A +G E + + E+ G F+GY Sbjct: 421 AGFKTAMAEQRSRAQA------AGQFETDYNEGLKIDEQSG---FVGYQ----------- 460 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +L N + V AI + GE V+ G + +V + TPFY E+GGQ GD G Sbjct: 461 ----------ELNN--QATVTAIYKAGEPVDALNVGDEAVIVLNNTPFYGESGGQCGDKG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + DGI Q+ D QK + I H + G + S+ +D + R + +NHS THL Sbjct: 509 VLLADGIEYQVADTQKYGQAIG-HIGKLAEGSIVVGQSIATNVDKKLRHRTELNHSVTHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS + P+ LRFD +H + + ++ELK +E+ VN I +N + Sbjct: 568 LHAALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKASELKEVEELVNTQIRRNHELKAE 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+ VRVV++ G S LCGGTHV TG+I L I S Sbjct: 628 VMDIEQAKEKGAMALFGEKYDAEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITS 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E I AGIRRIEA+TG A +++ Q L+ A+ LK +V+ +++ ++ + L Sbjct: 683 EGGIAAGIRRIEAVTGAAAMAYVAKQQASLEEAAALLKGDSASVITKLKAQLDKSKALEK 742 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 +L K KL + +VN + ++ + VD+ L+ + D L++K++SGI++L Sbjct: 743 ELAQLKDKLAAATSADLAGEAVEVNGIKVLVKQLEGVDAGSLRGLQDELKQKLKSGIVVL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGG 879 GI+ + K +++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG Sbjct: 803 -GIAGDAKVNLIAGVTKDLTGKVKAGELVASIAVQV--GGKGGGRPDMAQAGG 852 >gi|73540553|ref|YP_295073.1| alanyl-tRNA synthetase [Ralstonia eutropha JMP134] gi|83305858|sp|Q474F4|SYA_RALEJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|72117966|gb|AAZ60229.1| alanyl-tRNA synthetase [Ralstonia eutropha JMP134] Length = 874 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/910 (44%), Positives = 540/910 (59%), Gaps = 59/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS IR+ FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y T+ Sbjct: 3 VSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRATS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLTK + L Sbjct: 63 SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKVYQLPAE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++I+RI N DNFW MA+TGPCGPCSEIF Sbjct: 123 KLWVTVYAEDDEAYDIWAKEVGVPTERIVRIGDNKGSRYASDNFWQMADTGPCGPCSEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 FD G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 183 FDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF+ LI+A+ + T + N + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQALIKAAARETHIDNLNQNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG P L+ L +MG AYPEL A+ + E L++E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGQKTPFFHKLVADLVAQMGEAYPELADAQGRVTEVLKAEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ERF +T++ G+ +LD L+ L GK L+G++AFKL+DT G PLD+ QD+ C Sbjct: 361 ERFFETIENGMSILDAALADLKLKGGK--TLDGELAFKLHDTFGFPLDLTQDV-CREQEI 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F+ A+ QR +ARA K+ L+ T F GY+ L Sbjct: 418 AVDEAAFDAAMNRQREQARA-------AGKFKMAAGLEYSGDKTVFHGYEKLE------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 L Q I A+ G V+ GQ +V D TPFYAE+GGQ GD Sbjct: 464 ----LPQAKII-----------ALYVDGAAVDAMQPGQTGVIVLDNTPFYAESGGQAGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D K +F H +E G L+ ++ +D R + NHSATH Sbjct: 509 GVLKAGNAVFAVADTTKIQADVFGHQGTLEGGALKVGDTVQPQVDALRRARTVRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + D RFD +H+ P+T +++ +ED VN I +N Sbjct: 569 LMHKALREVLGTHVQQKGSLVDADKTRFDFSHNAPMTDEQIRRVEDIVNAEILRNEDTHA 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM +DA+ SGA AL G KY D VRV+S+ S LCGGTHV TG+I L IV Sbjct: 629 EIMPFDDAVKSGAMALFGEKYADDVRVLSIGT------SKELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 E + AGIRR+EAITG A +L D KL A+ LK +V R+ ++ E+ R L Sbjct: 683 VEGGVAAGIRRVEAITGDNALHYLQKLDAKLNEAAAALKAQPSELVPRIGQVQEQVRALE 742 Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826 +L K KL + D + DV + + +++ D K L+ MD L+ K+QS I+ Sbjct: 743 KELERLKSKLASSQGDELAEQAVDVKGLKVLAAQLEGADVKTLRETMDKLKDKLQSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 LAAVA-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPGKLP 860 Query: 887 QAIAGVASFL 896 QA++GV ++ Sbjct: 861 QALSGVVEWV 870 >gi|312795632|ref|YP_004028554.1| Alanyl-tRNA synthetase [Burkholderia rhizoxinica HKI 454] gi|312167407|emb|CBW74410.1| Alanyl-tRNA synthetase (EC 6.1.1.7) [Burkholderia rhizoxinica HKI 454] Length = 893 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 549/910 (60%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G + Y T Sbjct: 21 KAAEIREKFLRFFESKGHTIVRSSSLVPANDPTLLFTNSGMVQFKDVFLGADTRPYSRAT 80 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ + L Sbjct: 81 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTRVYQLPP 140 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L +TVY ED+EA+ +W G+ ++IIRI N DNFW MA+TGPCGPCSEI Sbjct: 141 EKLTVTVYHEDDEAYDIWANEIGVPLERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 200 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS+ EEG+R+IEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 201 FYDHGPQVWGGPPGSADEEGDRFIEIWNLVFMQFNRDAQGNLTPLPKQCVDTGMGLERLA 260 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI A+ + TG+ +N + +VI DH+R+ FLI DG++P N Sbjct: 261 AVLQHVHSNYEIDLFQRLIAAAARETGVLDLAHNSL--KVIADHIRACGFLIVDGVIPGN 318 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL A+ + + LR E Sbjct: 319 EGRGYVLRRIVRRAIRHGYKLGRKSPFFHRLVEDLVGEMGAAYPELKVAQQRVTDVLRQE 378 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +LD LS L ++L+G++AFKL+DT+G PLD+ D+ RG+ G Sbjct: 379 EERFFETIEHGMSILDAALSELTARGAKVLDGELAFKLHDTYGFPLDLTADVCRERGI-G 437 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D ++F++A+ QR +ARA +G + +L T F GYD K + +D Sbjct: 438 VDEVAFDEAMARQREQARA------AGKFRMVQ-TLDYTGSKTTFHGYD-----KHVFDD 485 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ G V +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 486 AKVV-----------------AVYVDGTAVPSLRAGQQGVVVLDQTPFYAESGGQVGDQG 528 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +R + D K + HH +E+G L+ + +D + R + + NHSATHL Sbjct: 529 TIGNATVRFAVFDTLKVQADVVGHHGTLEQGELKVGDVVSARVDAERRARTARNHSATHL 588 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG HV Q GS + PD RFD +H P++ E++ +E VN + N P + R Sbjct: 589 MHKALREVLGPHVQQKGSLVDPDKTRFDFSHHAPLSDDEIRRVEAIVNAEVLANTPGLAR 648 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA+ SGA AL G KY D VRV+ + + S LCGGTHV TG+I L IV Sbjct: 649 VMPFDDAVKSGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVQRTGDIGLFKIVF 702 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ + L A+ LKV + R+ ++ +++R L Sbjct: 703 EGGVAAGIRRVEAITGDNAVRYVQDLESTLAGAAAALKVQPAELAPRIAQVQDQFRALEK 762 Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K K+ + D + +A V+ ++ + D K L+ +D L+ K++ I+L Sbjct: 763 ELAQLKSKIASSQGDELVSQAVDVAGVHVLAAQLEGADVKTLRETVDKLKDKLKHAAIVL 822 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + +K Sbjct: 823 ASVDG-GKVSLIAGVTTDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPSKLPA 880 Query: 888 AIAGVASFLK 897 A++GV +++ Sbjct: 881 ALSGVKEWIQ 890 >gi|157374457|ref|YP_001473057.1| alanine--tRNA ligase [Shewanella sediminis HAW-EB3] gi|205830208|sp|A8FSV6|SYA_SHESH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157316831|gb|ABV35929.1| Alanine--tRNA ligase [Shewanella sediminis HAW-EB3] Length = 874 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/908 (42%), Positives = 559/908 (61%), Gaps = 56/908 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G++K Y T Sbjct: 4 TTAALRSAFLEYFRTNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+E L + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWNFLTQELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D+EA+ +W K G+ A+ +IRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYETDDEAYDIWTKEIGVPAENLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q+ E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQSDGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ + N + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILSVTDLENKSL--RVISDHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG ++ L+P L MG A L+ + ++E++L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGASDSFFYKLVPTLIEVMGDAAKGLVATQAIVEKSLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LDG L+ L K ++L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDGALNAL-KGDVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A +G E + + T F GY L Sbjct: 420 EAGFEVAMAEQRSRAQA------AGQFETDYNDSLKIDELTHFSGYTEL----------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 P +T AI GE V +G + +V D TPFY E+GGQ GD G Sbjct: 463 ----TAPGKIT--------AIYMAGESVNSLSAGDEAVIVLDSTPFYGESGGQCGDRGVL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 GI + D QK + + H + G L SL +D + R + +NHS THLLH Sbjct: 511 SAKGIEFDVKDTQKYGQAVG-HQGALTSGTLSVGDSLEANVDKKLRHRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + + LRFD +H + + ELK++ED VN I +N + +M Sbjct: 570 AALRQLLGTHVTQKGSLVDSERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSAEVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + A GA AL G KY D VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 DMDQAKEKGAMALFGEKYTDEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 I AG+RRIEA+TG A +++ GQ +L A+ LK +VV +++ + + L +L Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAGQKAELDQAAALLKADSASVVSKLKAQLDRTKLLEKEL 744 Query: 773 IHAKRKLQLNVE-DLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL+ ++ VN + + V++ L+ + D L++K+ SGI++L G Sbjct: 745 SQLKDKLAAATSADLAGEAQQVNGVNVLVKKLDGVEAGALRGLQDELKQKLGSGIVVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I+ + K ++++ VT+DL + A +L A ++++V GG GGGRP MAQ+GG D A Sbjct: 804 IAGDAKVNLIVGVTKDLTSKVKAGELVASIASQV--GGKGGGRPDMAQAGGSQPENLDSA 861 Query: 889 IAGVASFL 896 + V +L Sbjct: 862 LEQVIPWL 869 >gi|153829905|ref|ZP_01982572.1| alanyl-tRNA synthetase [Vibrio cholerae 623-39] gi|148874593|gb|EDL72728.1| alanyl-tRNA synthetase [Vibrio cholerae 623-39] Length = 860 Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/907 (43%), Positives = 551/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN + +N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|332035475|gb|EGI71972.1| alanyl-tRNA synthetase [Pseudoalteromonas haloplanktis ANT/505] Length = 866 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/904 (45%), Positives = 560/904 (61%), Gaps = 56/904 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF H+++PSSSLIP ND TL+F N+GMV FK++F G E Y T Sbjct: 5 TTAQIRQQFLDFFASKQHQIVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ L Q Sbjct: 65 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTEVVKLPQ 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +T+Y +DEEAF+ W K GLS D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 EKLLVTIYHDDEEAFEYWSKDIGLSEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 184 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PG+ EE G+R+IEIWNLVFMQ+ +Q+ LPK S+DTGMGLER++ +LQ Sbjct: 185 IWGGPPGTPEEDGDRFIEIWNLVFMQYNRQSDGTMLPLPKQSVDTGMGLERISAILQGVH 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+IDLF+ LI A+ VT + + + RV+ DH+RS +FLI+DG++P+NEGRGYVL Sbjct: 245 SNYEIDLFQGLIAAAASVTNAQDMDDKSL--RVVADHIRSCAFLISDGVMPSNEGRGYVL 302 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG L+ AL +MG AYPEL + + +IE+ LR E+E+FGKT Sbjct: 303 RRIIRRAVRHGNKLGAQGSFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGKT 362 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL +L+ LS L K +I+ GD+ FKLYDT+G P D+ D+ R + ID F + Sbjct: 363 LERGLAILEESLSDL-KGDIIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHQGFEEC 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + QR A+ + G+ E++ EK T+F GYD Sbjct: 421 MAVQRKTAQ-QAGKFGADYNEQL---KSEKL--TEFKGYD-------------------- 454 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + S+ V I GE V+ GQ+ VV D+TPFYAE+GGQ GDTG G Sbjct: 455 ---STHHSATVVEIFAGGEAVQLLEDGQQGIVVLDRTPFYAESGGQTGDTGTITVAGGEF 511 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +T+ K F HH IV+ G + + TID R + NH+ATH+LH AL +L Sbjct: 512 NVTNTTKLGNA-FAHHGIVQ-GRIGVNDKVDATIDNARRDSIKKNHTATHILHEALRQLL 569 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV Q GS + PD LRFD +H + +T EL+ IE VND I +N + T +M +DA A Sbjct: 570 GDHVGQKGSLVQPDRLRFDFSHFEAVTKDELREIERVVNDEIRRNFALNTELMAIDDAKA 629 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL G KY+D VRVV++ G +S LCGGTHV G+I L IVSES I AG+R Sbjct: 630 KGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGVR 684 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+TG A +++ Q+++L +A+ +K +V+ +V + E+ + L+ K+ QL Sbjct: 685 RIEAVTGADAVAYVSEQEQQLHDVAALVKGDSASVLEKVTALLEKSKGLE----KQIAQL 740 Query: 782 NVEDLSC------HKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISK 832 N + S I ++N + +++ V +SK L+ ++D L+ KI SG+I L G++ Sbjct: 741 NDKLASAAGASLLDSIVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVAS 799 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ VT+DL + A +L A + GG GGGRP MAQ+GG A+ V Sbjct: 800 GDKVSLIAGVTKDLTGKVKAGELVNHMAGQV-GGKGGGRPDMAQAGGSEPQNLAAALDSV 858 Query: 893 ASFL 896 ++L Sbjct: 859 TAWL 862 >gi|206578751|ref|YP_002236967.1| alanyl-tRNA synthetase [Klebsiella pneumoniae 342] gi|206567809|gb|ACI09585.1| alanyl-tRNA synthetase [Klebsiella pneumoniae 342] Length = 875 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/894 (44%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E F L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI + +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIAVMGSAGEELKQQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L K + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I GA++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++D QK + I H V G L+ ++ +D R+++ +NHSATHL Sbjct: 511 ELKGAGFSFAVSDTQKYGQAIG-HIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I S Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLQM-----GDFSTELCGGTHAARTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIAMLHAQSDQLSDIAQLLKGDSHNLGEKVRAALERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K ++N + ++SE V+ K L++++D L+ ++ S +++L Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVVVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|107022482|ref|YP_620809.1| alanyl-tRNA synthetase [Burkholderia cenocepacia AU 1054] gi|105892671|gb|ABF75836.1| alanyl-tRNA synthetase [Burkholderia cenocepacia AU 1054] Length = 897 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 26 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 85 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHH FFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 86 AQRSVRAGGKHNDLENVGYTARHHAFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 145 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 146 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 205 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 206 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 265 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 266 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 323 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+ Sbjct: 324 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 383 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 384 ERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 442 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 443 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 490 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 491 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 533 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID Q R + NHSATHL+ Sbjct: 534 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 593 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VN+ I N P + R+ Sbjct: 594 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 653 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV E Sbjct: 654 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 707 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L + Sbjct: 708 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEKE 767 Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D + +A V ++ + D+K L+ +D L+ K++S I+L Sbjct: 768 LGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 827 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 828 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 885 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 886 LAGVKGWVEE 895 >gi|262043942|ref|ZP_06017027.1| alanine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038706|gb|EEW39892.1| alanine-tRNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 875 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/894 (44%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E F L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGNMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI + +VTG N + RVI DH+RS +FL+ADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLVADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L K + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I GA++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++D QK + I H V G L+ ++ +D R+++ +NHSATHL Sbjct: 511 ELKGAGFSFAVSDTQKYGQAIG-HIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I S Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K ++N + ++SE V+ K L++++D L+ ++ S I++L Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|295097277|emb|CBK86367.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 875 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/909 (44%), Positives = 572/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EAF +W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAFDIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF LI+A +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYEIDLFSTLIKAVAEVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L K + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDDELAKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GY+ L Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFKGYEEL--------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++S V A+ G+ V+ +GQ+ V+ D+TPFYAE+GGQ+GD G Sbjct: 465 --------------ALTSNVTALFVDGKAVDSISAGQEAVVILDKTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+G ++D QK + I H + G L+ + +D R ++ +NHSATHL Sbjct: 511 ELKGNGFSFSVSDTQKYGQAIG-HQGKLVSGSLKVGEGVQANVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H + + +E++++ED VN I +NLP+ T Sbjct: 570 MHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIETH 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+DRVRV+S+ G S+ LCGGTH S TG+I L IVS Sbjct: 630 IMDLEAAKKKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V + R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIASLHAQSDQLHEIAQLLKGDSQNLGEKVRVALDRTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+ + ++S+ V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDIKGVKLLVSDLAGVEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPA 862 Query: 888 AIAGVASFL 896 A+A V S++ Sbjct: 863 ALASVESWV 871 >gi|15640567|ref|NP_230196.1| alanyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590679|ref|ZP_01678012.1| alanyl-tRNA synthetase [Vibrio cholerae 2740-80] gi|121728567|ref|ZP_01681589.1| alanyl-tRNA synthetase [Vibrio cholerae V52] gi|153819108|ref|ZP_01971775.1| alanyl-tRNA synthetase [Vibrio cholerae NCTC 8457] gi|153823946|ref|ZP_01976613.1| alanyl-tRNA synthetase [Vibrio cholerae B33] gi|227080728|ref|YP_002809279.1| alanyl-tRNA synthetase [Vibrio cholerae M66-2] gi|229507157|ref|ZP_04396663.1| alanyl-tRNA synthetase [Vibrio cholerae BX 330286] gi|229508981|ref|ZP_04398469.1| alanyl-tRNA synthetase [Vibrio cholerae B33] gi|229519648|ref|ZP_04409091.1| alanyl-tRNA synthetase [Vibrio cholerae RC9] gi|229606165|ref|YP_002876813.1| alanyl-tRNA synthetase [Vibrio cholerae MJ-1236] gi|254850784|ref|ZP_05240134.1| alanyl-tRNA synthetase [Vibrio cholerae MO10] gi|255744228|ref|ZP_05418181.1| alanyl-tRNA synthetase [Vibrio cholera CIRS 101] gi|12644031|sp|Q56648|SYA_VIBCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|9654973|gb|AAF93713.1| alanyl-tRNA synthetase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547465|gb|EAX57573.1| alanyl-tRNA synthetase [Vibrio cholerae 2740-80] gi|121629179|gb|EAX61620.1| alanyl-tRNA synthetase [Vibrio cholerae V52] gi|126510340|gb|EAZ72934.1| alanyl-tRNA synthetase [Vibrio cholerae NCTC 8457] gi|126518530|gb|EAZ75753.1| alanyl-tRNA synthetase [Vibrio cholerae B33] gi|227008616|gb|ACP04828.1| alanyl-tRNA synthetase [Vibrio cholerae M66-2] gi|229344337|gb|EEO09312.1| alanyl-tRNA synthetase [Vibrio cholerae RC9] gi|229353906|gb|EEO18840.1| alanyl-tRNA synthetase [Vibrio cholerae B33] gi|229355902|gb|EEO20822.1| alanyl-tRNA synthetase [Vibrio cholerae BX 330286] gi|229368820|gb|ACQ59243.1| alanyl-tRNA synthetase [Vibrio cholerae MJ-1236] gi|254846489|gb|EET24903.1| alanyl-tRNA synthetase [Vibrio cholerae MO10] gi|255738168|gb|EET93560.1| alanyl-tRNA synthetase [Vibrio cholera CIRS 101] Length = 860 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/907 (43%), Positives = 551/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN + +N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|329999040|ref|ZP_08303295.1| alanine--tRNA ligase [Klebsiella sp. MS 92-3] gi|328538480|gb|EGF64595.1| alanine--tRNA ligase [Klebsiella sp. MS 92-3] Length = 875 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/894 (44%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E F L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI + +VTG N + RVI DH+RS +FL+ADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLVADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L K + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I GA++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++D QK + I H V G L+ ++ +D R+++ +NHSATHL Sbjct: 511 ELKGVGFSFAVSDTQKYGQAIG-HIGKVASGTLKVGDAVQADVDEARRQRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I S Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K ++N + ++SE V+ K L++++D L+ ++ S I++L Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|238896148|ref|YP_002920884.1| alanyl-tRNA synthetase [Klebsiella pneumoniae NTUH-K2044] gi|238548466|dbj|BAH64817.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 875 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/894 (44%), Positives = 562/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E F L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI + +VTG N + RVI DH+RS +FL+ADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLVADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L K + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I GA++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++D QK + I H V G L+ ++ +D R+++ +NHSATHL Sbjct: 511 ELKGAGFSFAVSDTQKYGQAIG-HIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I S Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K ++N + ++SE V+ K L++++D L+ ++ S I++L Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|229512814|ref|ZP_04402281.1| alanyl-tRNA synthetase [Vibrio cholerae TMA 21] gi|229350063|gb|EEO15016.1| alanyl-tRNA synthetase [Vibrio cholerae TMA 21] Length = 860 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/907 (43%), Positives = 550/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGSEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T+ + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATDDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|301155669|emb|CBW15137.1| alanyl-tRNA synthetase [Haemophilus parainfluenzae T3T1] Length = 874 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/913 (43%), Positives = 559/913 (61%), Gaps = 60/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDNEAYDIWHKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRQADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+F+ LI + +V G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKTAEVVGTTDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A E+ + + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKEVKEKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + KD +L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDDALAQV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERDI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A ID F + +E QR RA++ S G+ ++ G T+F GY Sbjct: 418 A-IDEAGFEREMEAQRLRAQSASQFGMDYNNVIRV-------EGETKFEGY--------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + L + V A+ G+ V+ +GQ V+ + TPFYAE+GGQ+G Sbjct: 461 -TESESLAK-------------VTALFHDGKSVDSITAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G GI+ + D QK + +F H +E+G L+ ++ +D R Q S+NHSA Sbjct: 507 DSGYLTSQGIQFNVKDTQKYGQ-VFGHIGELEQGTLKVGQTVNAVVDAARRHQTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV Q GS ++ LRFD H + IT A+L IE VN + +N V Sbjct: 566 THLLHAALRQVLGHHVVQKGSLVSDTALRFDFAHPEAITKAQLNEIETLVNQKVRENFVV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T +M+ E A A GA AL G KY+D VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDVMDIEAAKAKGAMALFGEKYSDVVRVLTM-----GDFSVELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IV+E+++ AG+RRIEA+TG+ A + L Q L A K +V +++++ ++ +K Sbjct: 681 IVAETAVAAGVRRIEAVTGENAINWLHNQQRILTQSADLFKSDVNTLVEKIQQLQDKAKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + K +Q DL S KI DV+ + H + +++K L+ ++D L+ ++ SG Sbjct: 741 AEKELQGLKEKAAMQAG-SDLVKSAVKINDVSVIVHQLDGIETKSLRVMVDDLKNQLGSG 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+ I + K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 800 VIVFASIL-DDKVNLVVGVTSDLTTKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPE 857 Query: 884 KADQAIAGVASFL 896 + A+ ++L Sbjct: 858 NVNLALTVAQNWL 870 >gi|300722254|ref|YP_003711538.1| alanyl-tRNA synthetase [Xenorhabdus nematophila ATCC 19061] gi|297628755|emb|CBJ89333.1| alanyl-tRNA synthetase [Xenorhabdus nematophila ATCC 19061] Length = 875 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/909 (43%), Positives = 561/909 (61%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHTKGHQVVPSSSLVPTNDPTLLFTNAGMNQFKDVFLGLDKRPYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTSEKWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+ +W K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAYDIWHKEVGVPTERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF + LPK S+DTGMGLER Sbjct: 184 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHVDGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NY+IDLF+ LI + VTG N + RV+ DH+R+ +FLI DG++P Sbjct: 244 ITAVLQHVNSNYEIDLFQSLIASVADVTGATDLTNKSL--RVVADHIRACAFLICDGVVP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG+A EL Q + L+E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKEAFFYKLVAPLIKIMGAAGEELKQQQALVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLQLLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+E QR RAR S G G+ E I G++ F GY+ Sbjct: 420 VDEAGFEMAMENQRRRARESS-GFGTDYNELIKVD-----GSSDFCGYE----------- 462 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N +IV AI + GE VE+ +G++ V+ D+T FYAE+GGQ GD G Sbjct: 463 ------------HNSQQAIVTAIFRNGESVEQIHAGEEAVVILDKTAFYAESGGQAGDMG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK A+ + H + GIL ++ ID R + +NHSATHL Sbjct: 511 HLLNSDGVFEVLDTQKYAQ-VIGHIGKLTSGILAVNHTVNAEIDVVRRDAIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL ILG HV+Q GS + LRFD +H + + S +++ +E+ VN+ I +N PVVT Sbjct: 570 LHAALRQILGEHVAQKGSLVNDKYLRFDFSHFEAMKSEQIRQVENLVNEEIRKNSPVVTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M EDA + GA AL G KY+++VRV+S+ G S+ LCGGTH S TG+I + I S Sbjct: 630 LMALEDAKSKGAMALFGEKYDEKVRVLSM-----GGFSTELCGGTHASRTGDIGVFRISS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEAITGQ A + Q + L+ +A +K ++ +V+ + ++L+ Sbjct: 685 ESGTAAGIRRIEAITGQTALDAIYQQTDLLQDIAHLVKGDISSLNEKVKTTLDRMKQLEK 744 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ S +I V + + +V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKSQQAAQESSSLANQTKEIQGVRLLVTQLGDVEPKMLRTMVDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K S+++ +T+DL + A DL A+ + GG GGGRP +AQ+GG + Sbjct: 805 STVAGD-KVSLIVGITKDLTAKIKAGDLISFVAQQV-GGKGGGRPDLAQAGGTDVTALPT 862 Query: 888 AIAGVASFL 896 A+A V ++ Sbjct: 863 ALASVEEWV 871 >gi|157961024|ref|YP_001501058.1| alanyl-tRNA synthetase [Shewanella pealeana ATCC 700345] gi|205830206|sp|A8H1T6|SYA_SHEPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157846024|gb|ABV86523.1| alanyl-tRNA synthetase [Shewanella pealeana ATCC 700345] Length = 875 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/912 (43%), Positives = 566/912 (62%), Gaps = 63/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAALRSAFLEYFRTNGHQVVDSSSLVPANDPTLLFTNAGMNQFKDVFLGADKRSYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW LT+E L + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIHFAWTFLTEELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+YD D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYDTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMKPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + + G+ N + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKAAAILGVTDLENKSL--RVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS-AYPELIQAKLLIEETLRS 353 EGRGYVLRRI+RRA+ + LG TE L+P L MG+ A L + + ++E++L++ Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATESFFYKLVPTLIEVMGADAAKGLQETQAIVEKSLKA 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F +TL+RGL +LD L+ L + +L+G+ AFKLYDT+G P+D+ D+ R + + Sbjct: 362 EEEQFARTLERGLGILDAALNELATN-VLDGETAFKLYDTYGFPVDLTADVCRERDIT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIW---FSLKEKYGATQFIGYDLLRGSKFMK 470 D F A+ QRSRA+A +G E + + E+ G F GY Sbjct: 420 DEAGFEVAMAAQRSRAQA------AGQFETDYNEGLIIDEQSG---FTGY---------- 460 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 DL N + V AI + GE V+ V+G V +V D TPFY E+GGQ GD Sbjct: 461 -----------TDLNN--QATVTAIFKAGESVDSIVAGDDVVIVLDNTPFYGESGGQCGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G I DGI +TD QK + I H V G ++ + +D + R + +NHS T Sbjct: 508 EGVLIADGIEFTVTDTQKYGQAIG-HIGRVATGTVKVGQVVTANVDKKLRHRTELNHSVT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN I +N + Sbjct: 567 HLLHAALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAHELKEVEELVNTQIRRNHELT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 +M+ E A GA AL G KY+ VRVV++ G S LCGGTHV TG+I L I Sbjct: 627 AEVMDIETAKEKGAMALFGEKYDSEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE I AGIRRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ + L Sbjct: 682 TSEGGIAAGIRRIEAVTGAAAMAYVAKQQAQLEEAAALLKGDSASVVAKLKAQLDKTKLL 741 Query: 771 --QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825 +L K KL + DVN + ++ + VD+ L+ + D L++K+QSGI+ Sbjct: 742 EKELSQLKDKLAAATSADLAGEAVDVNGVKVLVKKLEGVDAGALRGLQDELKQKLQSGIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L I+ E K ++++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG Sbjct: 802 VLA-IAGEDKVNMIVGVTKDLTGKVKAGELVASIAVQV--GGKGGGRPDMAQAGGSQPEN 858 Query: 885 ADQAIAGVASFL 896 D A+ V ++ Sbjct: 859 LDAALEQVIPWI 870 >gi|147675089|ref|YP_001216045.1| alanyl-tRNA synthetase [Vibrio cholerae O395] gi|229520840|ref|ZP_04410262.1| alanyl-tRNA synthetase [Vibrio cholerae TM 11079-80] gi|262169855|ref|ZP_06037545.1| alanyl-tRNA synthetase [Vibrio cholerae RC27] gi|205830284|sp|A5F9B7|SYA_VIBC3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146316972|gb|ABQ21511.1| alanyl-tRNA synthetase [Vibrio cholerae O395] gi|227012371|gb|ACP08581.1| alanyl-tRNA synthetase [Vibrio cholerae O395] gi|229342073|gb|EEO07069.1| alanyl-tRNA synthetase [Vibrio cholerae TM 11079-80] gi|262021589|gb|EEY40300.1| alanyl-tRNA synthetase [Vibrio cholerae RC27] Length = 860 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/907 (43%), Positives = 551/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN + +N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|205830050|sp|Q1BX19|SYA_BURCA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHH FFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHAFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID Q R + NHSATHL+ Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + D RFD H+ P+T E++ +E VN+ I N P + R+ Sbjct: 571 HKALREVLGAHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ E+ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQEQVKSLEKE 744 Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D + +A V ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LGALKSKLASSQGDELAQQAVEVAGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AVEG-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|152971551|ref|YP_001336660.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|205830073|sp|A6TCV9|SYA_KLEP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|150956400|gb|ABR78430.1| alanyl-tRNA synthetase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 875 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/894 (44%), Positives = 561/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E F L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI + +VTG N + RVI DH+RS +FL+ADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLVADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIDVMGSAGDELKQQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L K + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I GA++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GASEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++D QK + I H V G L+ ++ +D R ++ +NHSATHL Sbjct: 511 ELKGAGFSFAVSDTQKYGQAIG-HIGKVASGSLKVGDAVQADVDEARRHRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I S Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLRM-----GDFSTELCGGTHAARTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAMAILHAQSDQLNDIAQLLKGDSHNLGEKVRAALERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K ++N + ++SE V+ K L++++D L+ ++ S I++L Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELTGVEPKMLRTMVDDLKNQLGSTIVVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|269140202|ref|YP_003296903.1| alanyl-tRNA synthetase [Edwardsiella tarda EIB202] gi|267985863|gb|ACY85692.1| alanyl-tRNA synthetase [Edwardsiella tarda EIB202] gi|304560033|gb|ADM42697.1| Alanyl-tRNA synthetase [Edwardsiella tarda FL6-60] Length = 875 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/909 (43%), Positives = 570/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFYHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGIDKRSYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGAQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYESDDEAYDIWANEVGVPRERIIRIGDNKGAAYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G I GG PGS E+G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGAHIAGGPPGSPDEDGDRYIEIWNIVFMQFNRQSDGTLLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI + +V G+ + + RVI DH+RS +FL++DG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIAETARVIGVSDLSSKSL--RVIADHIRSCAFLVSDGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG E L+ L MGSA L Q + ++E+ L+ Sbjct: 302 SNEGRGYVLRRIIRRAVRHGHMLGAKEAFFYKLVKPLIAVMGSAADALAQQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G PLD+ D+ RGL Sbjct: 362 TEEEQFARTLERGLTLLDDELSTLDGD-TLDGETAFRLYDTYGFPLDLTADVCRERGLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E QR RAR S G G+ + S+ G+T F GY L ++D Sbjct: 420 VDEEGFERAMEAQRRRARESS-GFGAD-----YNSMIRVDGSTDFTGYHL------QQQD 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++V A+ G+ V+ +G++ VV QTPFYAE+GGQ+GD G Sbjct: 468 -----------------ALVTALFHNGQAVDALQAGEEGVVVLAQTPFYAESGGQVGDRG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G R + D QK + I H V +G LR + +ID R ++ +HSATHL Sbjct: 511 ELTAQGCRFVVEDTQKYGQAIG-HLGKVAQGSLRVGERVQASIDGARRERIRQSHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL ++LG HV+Q GS ++ LRFD +H++ + +++ +ED VN I +NLP+ T+ Sbjct: 570 MHAALRSVLGEHVAQKGSLVSDGALRFDFSHAEAMKPQQIRQVEDIVNAQIRRNLPIDTQ 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E+A A GA AL G KY+ +VRV+S+ G S+ LCGGTH TG+I L IVS Sbjct: 630 EMGLEEAKAKGAMALFGEKYDAQVRVLSM-----GDFSTELCGGTHAERTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG++A + + + L+ AS +K +V ++ + E+ R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEQALLAMHQESDMLREAASLVKGDAQSVAEKIRAVMEKSRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827 + K Q ++ + K +VN + ++S++D E L++++D L+ ++ S I++L Sbjct: 745 ALQQLKDQQAAQESASLSGKAVEVNGVKLLVSQLDGVEPKMLRTMVDDLKNQMGSCIVVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ K S++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + Q Sbjct: 805 A-TAEAGKVSLIAGVTKDLTAKVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPQ 862 Query: 888 AIAGVASFL 896 A+A V ++ Sbjct: 863 ALASVTDWV 871 >gi|118581577|ref|YP_902827.1| alanyl-tRNA synthetase [Pelobacter propionicus DSM 2379] gi|205830173|sp|A1ATU9|SYA_PELPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118504287|gb|ABL00770.1| alanyl-tRNA synthetase [Pelobacter propionicus DSM 2379] Length = 878 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/886 (43%), Positives = 541/886 (61%), Gaps = 42/886 (4%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL FF + GH ++PSS +IP NDPTLMF N+GM FK+ F G EK Y + Sbjct: 4 SEIRRRFLTFFAERGHTIVPSSGIIPKNDPTLMFANAGMNQFKDCFLGMEKRDYTRACSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT++ LD+ R Sbjct: 64 QKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTRDLKLDKNR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY++VY +D+EA +W + G+ ++I R DNFWSM +TGPCGPCSEIF+DQGE Sbjct: 124 LYVSVYTDDQEAADIWHQQEGVPLERIFRFGEKDNFWSMGDTGPCGPCSEIFYDQGEAAG 183 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + + +RY+EIWN VFMQF++ LPK S+DTGMGLER++ V+Q T+ Sbjct: 184 CGSPDCTVGCDCDRYMEIWNNVFMQFDRSTDGVLTPLPKPSVDTGMGLERISAVMQGVTS 243 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NYD DL + +I+ E+++G Y + + V+ RVI DH R+ +FLI DG LP+NEGRGYV Sbjct: 244 NYDTDLIQGIIRHVERLSGKTYGKDERDDVSMRVIADHARAVTFLICDGALPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRA +A++LG +P++ H++ A+ MG+AYPEL++ + I++ + +E++RF + Sbjct: 304 LRRIMRRAARHAKMLGLADPMLCHMVDAVRDMMGAAYPELVEREEYIKKVILAEEQRFAE 363 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLDRGL +L+ ++ + ++ GDV F+LYDT+G P+D+ DI+ + G ID F Sbjct: 364 TLDRGLAMLNDEVARMRAAGSTVIPGDVLFRLYDTYGFPIDLTADIVESEGFT-IDEAGF 422 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 Q +E QR +AR H G G+ +++ L + +F+GYD L Sbjct: 423 EQCMERQREQAREHWKGSGAEGIGRVYKELYSRGIRGEFVGYDGL--------------- 467 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S V AI++ G VE A +G+ +E+V + TPFY E+GGQ GD G Sbjct: 468 --------SALSPVLAIIRDGVEVESATAGETIELVTESTPFYGESGGQKGDCGSISTGN 519 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 L+++ + + VHHA V GI+R L + R + NH+ATHLL AL Sbjct: 520 SHLEVSGASRPYSDLIVHHATVREGIIRKGDGADLRVSRPERSATARNHTATHLLQAALR 579 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS ++PD LRFD H +T+ E++ +E VN + N PVV M+ Sbjct: 580 RVLGEHVKQAGSLVSPDRLRFDFIHFTAMTTEEIRRVETLVNGFVMDNQPVVITQMDMAS 639 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 AI +GA AL KY D VRVV G S LCGGTHV +TGEI L I++E+ I A Sbjct: 640 AIEAGATALFDEKYGDNVRVVRA-----GEVSMELCGGTHVRATGEIGLFKIITETGIAA 694 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA TG A S + +++ ++LA LK GN+ R+E++ R++Q + Sbjct: 695 GVRRIEAQTGGGALSFVRQMEDEQRALAGLLKAEGGNLPERLEKLLARQREMQREIESLQ 754 Query: 779 LQLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +LN DL ++ + ++ + D K L+ + D L+++I G+I+L G + Sbjct: 755 GKLNAAASGDLLSGVEEVGGIKLLAAEVRVEDVKALRDLSDTLKERIGQGVIVL-GAAIG 813 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 KA++L+ VT +L A DL + A ++ GG GGG+P +AQ+GG Sbjct: 814 GKANLLVAVTRELSGTVKAGDLVKKLAPLV-GGSGGGKPELAQAGG 858 >gi|189426203|ref|YP_001953380.1| alanyl-tRNA synthetase [Geobacter lovleyi SZ] gi|189422462|gb|ACD96860.1| alanyl-tRNA synthetase [Geobacter lovleyi SZ] Length = 876 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/903 (43%), Positives = 547/903 (60%), Gaps = 42/903 (4%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL++F+ GH ++ SS LIP NDPTLMFTN+GM FK+ F G E Y + Sbjct: 4 NEIRARFLKYFEDRGHVVVSSSGLIPQNDPTLMFTNAGMNQFKDCFLGMEDRGYYRAASS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTK+ LD R Sbjct: 64 QKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLDTSR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY+TVY +D+EA +W + G+ ++I R DNFWSM +TGPCGPC+EIF+D G + Sbjct: 124 LYVTVYTDDDEAADIWHQQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGPEVG 183 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + + +RY+EIWN VFMQF + LPK ++DTGMGLER+ TV+Q + Sbjct: 184 CGSPDCAVGCDCDRYMEIWNNVFMQFNRTADGVLHPLPKPAVDTGMGLERITTVMQGVRS 243 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NYD DL + +I+ E+ +G KY N + V+ RVI DH R+ +FLI DG LP+NEGRGYV Sbjct: 244 NYDTDLLQGIIRHIERHSGKKYGDNEKDSVSMRVIADHCRAVTFLICDGALPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRA +A++LG EPL+ ++ A+ MG AYPEL + + I + + +E+ERF + Sbjct: 304 LRRIMRRAARHAKMLGVAEPLLCRMVDAVREMMGDAYPELAERETYIRKVVLAEEERFNE 363 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLDRGL +L+ ++ L G ++ G+ FKLYDT G P+D+ +DI+ A G + +D F Sbjct: 364 TLDRGLAILNEEVASLRAGGCSVIPGETLFKLYDTFGFPVDLTEDIVRAEGFS-VDEPGF 422 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +E QR R H G G+ ++ L T F+GY L + F Sbjct: 423 EACMEHQRELGREHWKGSGAAGIADVYKELHNHGLRTNFVGYGSL--TAF---------- 470 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S V A+++ G+ V+ A +G K++++ D +PFY E+GGQ GDTGC Sbjct: 471 -----------SPVTALLRDGKKVQSATAGDKIDLICDTSPFYGESGGQAGDTGCISSGS 519 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 RL++ + + VHHA+V+ G ++T ++ LT+ RR + NHSATHLL AL Sbjct: 520 ARLEVLATSRPFTDLVVHHALVKEGAIKTGDAVNLTVAIDKRRATARNHSATHLLQAALR 579 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG H+ Q GS + P+ LRFD TH +T EL+ +ED VN I N + R M ++ Sbjct: 580 QVLGEHIKQAGSLVEPNRLRFDFTHFTGVTPEELQQVEDLVNGWIMDNAELNIREMGMQE 639 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ SGA AL KY VRVV + G S+ LCGGTHV + G+I L I+SE I A Sbjct: 640 AVESGATALFDEKYGSTVRVVRI-----GEVSAELCGGTHVRAAGDIGLFKILSEGGIAA 694 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIE TG A S + + + +++A LK +V RVE++ E R+LQ + Sbjct: 695 GVRRIEGATGFNALSFVRRLEGERQTVAELLKADSSKLVDRVEKLVERQRELQREVESLQ 754 Query: 779 LQLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +LN DL + V ++ + VD K L+ + D L+ K+ SG+++L G + Sbjct: 755 GKLNTAQSGDLLSQVQEAGGVKLLAVQVQVVDIKALRDMADQLRDKLGSGVVVL-GAELD 813 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 KA++L+ VT+DL RF A +L A ++ GG GGG+P +AQ+GG K +A+A V+ Sbjct: 814 GKANLLVTVTKDLTGRFKAGELVGTLAPII-GGRGGGKPELAQAGGSQPEKLPEALAAVS 872 Query: 894 SFL 896 + + Sbjct: 873 ALM 875 >gi|327483364|gb|AEA77771.1| Alanyl-tRNA synthetase [Vibrio cholerae LMA3894-4] Length = 860 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/907 (43%), Positives = 550/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ +L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGSLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|288933924|ref|YP_003437983.1| alanyl-tRNA synthetase [Klebsiella variicola At-22] gi|290510997|ref|ZP_06550366.1| alanyl-tRNA synthetase [Klebsiella sp. 1_1_55] gi|288888653|gb|ADC56971.1| alanyl-tRNA synthetase [Klebsiella variicola At-22] gi|289775990|gb|EFD83989.1| alanyl-tRNA synthetase [Klebsiella sp. 1_1_55] Length = 875 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/894 (44%), Positives = 561/894 (62%), Gaps = 56/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E F L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF +W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAFDIWANEVGVPRERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI + +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRDLIASVAKVTGATDLTNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFWKLVAPLIAVMGSAGEELKQQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L K + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELSKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I G ++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----GVSEFKGYDHLE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ+ V+ DQTPFYAE+GGQ+GD G Sbjct: 466 ---------------LNGKVTALFIDGKAVDSVSAGQEAVVILDQTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++D QK + I H V G L+ ++ +D R+++ +NHSATHL Sbjct: 511 ELKGAGFSFAVSDTQKYGQAIG-HIGKVASGSLKVGDAVQADVDEARRQRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H + + E++++ED VN I +NL + T Sbjct: 570 MHAALRQVLGTHVAQKGSLVNDKALRFDFSHFEAMKPEEIRAVEDLVNAQIRRNLAIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A ASGA AL G KY+DRVRV+ + G S+ LCGGTH + TG+I L I S Sbjct: 630 IMDIDAARASGAMALFGEKYDDRVRVLQM-----GDFSTELCGGTHAARTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V E R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIAMLHAQSDQLSDIAQLLKGDSHNLGEKVRAALERTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K ++N + ++SE V+ K L++++D L+ ++ S +++L Sbjct: 745 ELQQLKEQAAAQESANLSSKAEEINGVKLLVSELAGVEPKMLRTMVDDLKNQLGSTVVVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-DGKVSLIAGVSKDVTDRVKAGELVGMVAQQV-GGKGGGRPDMAQAGGTD 856 >gi|323526792|ref|YP_004228945.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1001] gi|323383794|gb|ADX55885.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1001] Length = 890 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 18 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 77 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L + Sbjct: 78 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 137 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSEI Sbjct: 138 EKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 197 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 198 FYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 257 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 258 AVLQHVHSNYEIDLFQALIKAAARETGVSDLTNNSL--KVIADHIRACSFLIVDGVIPGN 315 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG ++ L +MGSAYPEL A+ + + LR E Sbjct: 316 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVEQMGSAYPELKDAQQRVTDVLRQE 375 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L K + L+G++AFKL+DT+G PLD+ D+ C Sbjct: 376 EERFFETIEHGMSILENALAELEKKGRKTLDGELAFKLHDTYGFPLDLTADV-CREREVT 434 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F++A+ QR +ARA K+ L+ T F GY+ + + +D Sbjct: 435 VDEAAFDEAMARQREQARA-------AGKFKMAQGLEYSGAKTTFHGYE-----EIVFDD 482 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ G V+E GQ+ VV D TPFYAE+GGQ+GD G Sbjct: 483 AKVV-----------------ALYVDGASVQEVAQGQQAVVVLDHTPFYAESGGQVGDQG 525 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +R + D K + HH +E+GIL+ + ID R + + NHSATHL Sbjct: 526 LLANASVRFAVADTLKVQADVVGHHGTLEQGILKVGDVVKAEIDAVRRARTARNHSATHL 585 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + PD RFD H+ P+T +++ +E+ VN + N P + R Sbjct: 586 MHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVR 645 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV Sbjct: 646 VMPFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVM 699 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A + D ++ + AS LK + R+ ++ ++ ++L Sbjct: 700 EGGVAAGIRRVEAITGDNAVRFVQDLDARINAAASVLKAQPSELTQRITQVQDQVKQLEK 759 Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K K+ + D ++A V ++ + D K L+ +D L+ K++S I+L Sbjct: 760 ELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRKTVDKLKDKLKSAAIVL 819 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 820 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 877 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 878 ALAGVKGWVE 887 >gi|297580680|ref|ZP_06942606.1| alanyl-tRNA synthetase [Vibrio cholerae RC385] gi|297535096|gb|EFH73931.1| alanyl-tRNA synthetase [Vibrio cholerae RC385] Length = 860 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/907 (43%), Positives = 549/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGASFHKLVGPLAEVMGTAGAELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|254226851|ref|ZP_04920422.1| alanyl-tRNA synthetase [Vibrio cholerae V51] gi|125620648|gb|EAZ49011.1| alanyl-tRNA synthetase [Vibrio cholerae V51] Length = 860 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/907 (43%), Positives = 551/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G + +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEISTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFYVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN + +N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|325579107|ref|ZP_08149063.1| alanine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392] gi|325159342|gb|EGC71476.1| alanine--tRNA ligase [Haemophilus parainfluenzae ATCC 33392] Length = 874 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/913 (43%), Positives = 557/913 (61%), Gaps = 60/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVASSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDNEAYDIWHKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+F+ LI + +V G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKTAEVVGTTDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A E+ + + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKEVKEKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + KD +L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDDALAQV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERDI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A ID F + +E QR RA++ S G+ ++ G T+F GY Sbjct: 418 A-IDEAGFEREMEAQRLRAQSASQFGMDYNNVIRV-------EGETKFEGY--------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + L + V A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 461 -TESESLAK-------------VTALFHDGKSVESITAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G GI+ + D QK + +F H +E+G L+ ++ +D R Q S+NHSA Sbjct: 507 DSGYLTSQGIQFNVKDTQKYGQ-VFGHIGELEQGTLKVGQTVNAVVDAARRHQTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV Q GS ++ LRFD H + IT A+L IE VN + +N V Sbjct: 566 THLLHAALRQVLGHHVVQKGSLVSDTALRFDFAHPEAITKAQLNEIETLVNQKVRENFVV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T +M+ E A A GA AL G KY D VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDVMDIEAAKAKGAMALFGEKYADVVRVLTM-----GDFSVELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IV+E+++ AG+RRIEA+TG+ A + L Q L A K +V +++++ ++ +K Sbjct: 681 IVAETAVAAGVRRIEAVTGENAMNWLHNQQRILTQSADLFKSDVNTLVEKIQQLQDKAKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + K +Q DL S KI DV+ + H + +++K L+ ++D L+ ++ SG Sbjct: 741 AEKELQGLKEKAAMQAG-SDLVKSAVKINDVSVIVHQLDGIETKSLRVMVDDLKNQLGSG 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+ I + K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 800 VIVFASIL-DDKVNLVVGVTSDLTTKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPE 857 Query: 884 KADQAIAGVASFL 896 + A+ ++L Sbjct: 858 NVNLALTVAQNWL 870 >gi|307730458|ref|YP_003907682.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1003] gi|307584993|gb|ADN58391.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1003] Length = 890 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 18 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 77 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L + Sbjct: 78 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 137 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSEI Sbjct: 138 EKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 197 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 198 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 257 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 258 AVLQHVHSNYEIDLFQALIKAAARETGVSDLANNSL--KVIADHIRACSFLIVDGVIPGN 315 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG ++ L +MGSAYPEL A+ + + LR E Sbjct: 316 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVEQMGSAYPELKDAQARVTDVLRQE 375 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L K L+G++AFKL+DT+G PLD+ D+ C Sbjct: 376 EERFFETIEHGMSILENALAELEKKGARTLDGELAFKLHDTYGFPLDLTADV-CREREVT 434 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F++A+ QR +ARA K+ L+ T F GY+ + + +D Sbjct: 435 VDEAAFDEAMARQREQARA-------AGKFKMSQGLEYSGAKTTFHGYE-----EIVFDD 482 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ G V+E GQ+ VV D TPFYAE+GGQ+GD G Sbjct: 483 AKVV-----------------ALYVDGASVQEVAHGQQTVVVLDHTPFYAESGGQVGDQG 525 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +R +TD K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 526 LLANASVRFAVTDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHL 585 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + PD RFD H+ P+T +++ +E+ VN + N P + R Sbjct: 586 MHKALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVR 645 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV Sbjct: 646 VMPFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVM 699 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A + D ++ + A+ LK + R+ ++ ++ ++L Sbjct: 700 EGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKQLEK 759 Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K K+ + D ++A V ++ + D K L+ +D L+ K++S I+L Sbjct: 760 ELSALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 819 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 820 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLGA 877 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 878 ALAGVKGWVE 887 >gi|85712448|ref|ZP_01043497.1| Alanyl-tRNA synthetase [Idiomarina baltica OS145] gi|85693726|gb|EAQ31675.1| Alanyl-tRNA synthetase [Idiomarina baltica OS145] Length = 867 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/905 (42%), Positives = 560/905 (61%), Gaps = 58/905 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F++FF++ GH+ +PS+S+IP NDPTL+FTN+GMVPFK++F G +K Y T+ Sbjct: 6 AEIREKFIQFFEQRGHQRVPSASMIPANDPTLLFTNAGMVPFKDVFLGTDKRNYTRATSA 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+E L + Sbjct: 66 QRCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKTEAIEFAWHFLTQELQLPAEK 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV++ED+EA+ +W K G+ D+I RI DNFWSM +TGPCGPCSE+F+D G + Sbjct: 126 LWVTVFEEDDEAYDIWAKHIGVPEDRISRIGVKDNFWSMGDTGPCGPCSEVFYDHGPEVW 185 Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PG+ EE G+RYIEIWNLVFMQ+ +Q LP SIDTGMGLER+A +LQ +N Sbjct: 186 GGPPGTPEEDGDRYIEIWNLVFMQYNRQADGTMEPLPNPSIDTGMGLERIAAILQGVHSN 245 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y+ID F+ LI+ S + G+ + + RVI DH+RS SFLIADG++P+NEGRGYVLRR Sbjct: 246 YEIDTFQALIKRSADIIGVSDLSSKSL--RVIADHIRSCSFLIADGVMPSNEGRGYVLRR 303 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG + L+ L MG AYPEL++ + +IE+ L+ E+++F KTL+ Sbjct: 304 IIRRAVRHGNLLGAKQTFFYQLVDELVKLMGEAYPELVEKRHIIEDALKREEQQFEKTLE 363 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 RGL +L+ + L + LNG+V FKLYDT+G P+D+ DI L ID FN A++ Sbjct: 364 RGLAILNDEIKQLSGN-TLNGEVVFKLYDTYGFPMDLTADIARENELV-IDEEGFNAAMQ 421 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR RA+ S G ++ + K + F GY ED+ Sbjct: 422 AQRERAQKASQ-FGVDYNAQVKATTK-----SVFDGY---------TEDK---------- 456 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + V + +G VE +GQ+ VV TPFYAE+GGQ+GDTG + + R ++ Sbjct: 457 ----AQTTVVELFHEGTAVESLEAGQQGVVVLANTPFYAESGGQVGDTGVLLANQGRFEV 512 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 TD Q + I HH + I + ++ ID + R + NHSATHLLH AL ILG Sbjct: 513 TDTQYIGKAI-AHHGQADCTI-KLGDAVTAEIDSERRANIRRNHSATHLLHAALRDILGD 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS + + +RFD H +P+T A++ +E VN+ I +N+ + T++MN ++A +G Sbjct: 571 HVQQKGSLVEAERMRFDFAHFEPLTKAQITELERVVNEQIRKNVRLTTQVMNIDEAKKAG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY+D VRVV + G S LCGGTHV++TG+I L I E+ I +G+RR+ Sbjct: 631 AMALFGEKYDDDVRVVRM-----GEFSMELCGGTHVAATGDIGLFRITHETGIASGVRRL 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 E +TG A + Q L L + K + ++G+V+++ +YR+L+ RK + Sbjct: 686 EVVTGAAAFEFMANQQAILNQLTADFKTDETGLLGKVDQLQSKYRELE-----RKAEQLQ 740 Query: 784 EDLS-------CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKE 833 + L+ + ++N I++++ ++K L+ ++D L+ ++ SG+++L ++ Sbjct: 741 QKLAQQAGGGLVQQAVEMNGHKVIVAQLEDTEAKALRGIVDDLKNQLGSGVVLLA-TAQG 799 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K S++ VT+DL A DL +A V+ GG GGGRP MAQ+GG N +A+A Sbjct: 800 SKVSLIAGVTKDLTSIVKAGDLVNQAANVV-GGKGGGRPDMAQAGGSNPEHLSEALATAT 858 Query: 894 SFLKK 898 S+L++ Sbjct: 859 SWLEQ 863 >gi|261346225|ref|ZP_05973869.1| alanine--tRNA ligase [Providencia rustigianii DSM 4541] gi|282565533|gb|EFB71068.1| alanine--tRNA ligase [Providencia rustigianii DSM 4541] Length = 875 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/913 (44%), Positives = 563/913 (61%), Gaps = 64/913 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHTKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT E F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYATDDEAYDIWNKEIGVPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PG+ EE G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGTPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NYDID+F+ LI A+ + TG N + RVI DH+RS +FLI+DG++P Sbjct: 244 ISAVLQHVNSNYDIDIFRELIAAAAEATGATDLSNKSL--RVIADHIRSCAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG + L+P L MG+A EL + + ++E+ L+ Sbjct: 302 SNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVPTLIKVMGTAADELQRQQAMVEKVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L K + L G+ AF+LYDT+G PLD+ D+ R + Sbjct: 362 TEEEQFARTLERGLQLLDDELASL-KGDTLEGETAFRLYDTYGFPLDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E+QR RAR S G G+ I + ++F GY + D Sbjct: 420 VDEEGFERAMEDQRRRARESS-GFGADYNALIKVDKR-----SEFSGY---------QHD 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + + A+ + G+ V+ +G++ V+ D+T FYAE+GGQ+GDTG Sbjct: 465 EQ--------------QATITALYKDGQPVDALNAGEEGLVILDKTAFYAESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I H VE G L + ++ + R + +NHSATHL Sbjct: 511 VLTNESGNFVVLDTQKYGQAIG-HVGKVESGSLVVNHRISARVNSERRNAIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL ILG HVSQ GS + LRFD +H + +T +L+ +ED VN I QN + T Sbjct: 570 LHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEALTQQQLRQVEDIVNAQIRQNSEIETE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A A GA AL G KY +RVRV+S+ G S LCGGTH S TG+I L I+S Sbjct: 630 LMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHASRTGDIGLFSILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA TG A HL Q E+L ++A LK ++V +V+ ++ R L+ Sbjct: 685 ESGTAAGVRRIEATTGATAIEHLHAQSEQLSAIAHLLKGDANSLVEKVKAALDKSRNLE- 743 Query: 773 IHAKRKLQLNVEDLSCH------KIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823 K LQL + S K DV + ++S++ D K L++++D L+ +++S Sbjct: 744 ---KEILQLKDQQASQESASLGSKAKDVKGIKLLVSQLNDTDPKLLRTMVDDLKNQLKSA 800 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L S + K S+++ VT DL + A DL A+ + GG GGGRP MA +GG + Sbjct: 801 IIVLSTTSGD-KVSIIVGVTNDLTAKIKAGDLVSYVAQQV-GGKGGGRPDMAMAGGSDVK 858 Query: 884 KADQAIAGVASFL 896 A+A V ++ Sbjct: 859 ALPTAMASVEQWV 871 >gi|145634774|ref|ZP_01790482.1| alanyl-tRNA synthetase [Haemophilus influenzae PittAA] gi|145267940|gb|EDK07936.1| alanyl-tRNA synthetase [Haemophilus influenzae PittAA] Length = 874 Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/914 (43%), Positives = 555/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G G+ + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSGQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKHTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VDKELQALKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|92112758|ref|YP_572686.1| alanyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043] gi|122420679|sp|Q1QZX1|SYA_CHRSD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91795848|gb|ABE57987.1| alanyl-tRNA synthetase [Chromohalobacter salexigens DSM 3043] Length = 868 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/899 (44%), Positives = 554/899 (61%), Gaps = 45/899 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF+++GH ++PSSSL+P NDPTL+FTN+GMVPFK++F G++ Y T+ Sbjct: 4 ADIRQAFLTFFEEHGHTIVPSSSLVPANDPTLLFTNAGMVPFKDVFLGRDPRPYVRATSA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+ L + Sbjct: 64 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRGAIRFAWTFLTERLGLPADK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA ++WK G+ + ++ DNFW M +TGPCGP SEIFFD G + Sbjct: 124 LWVTVHVSDDEAERIWKDEIGIDPARFSKL-DEDNFWQMGDTGPCGPSSEIFFDHGPEVA 182 Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS EE G+RYIEIWNLVFMQF++ + LPK SIDTGMGLER+A VLQ +N Sbjct: 183 GGPPGSPEEDGDRYIEIWNLVFMQFDRDSAGTLNPLPKPSIDTGMGLERVAAVLQGVHSN 242 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y+IDLF++L+ A+ + TG Y+ + + RVI DH+RS +FLI D +LP+NEGRGYVLRR Sbjct: 243 YEIDLFQNLLNAASEATG--YDDTSAPSLRVIADHIRSCAFLITDDVLPSNEGRGYVLRR 300 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG EP L+ AL EMG+AYPEL +A+ IE+ L E+E+F +TLD Sbjct: 301 IIRRAIRHGHKLGAREPFFHTLVAALDAEMGAAYPELRKARPRIEKVLLKEEEQFARTLD 360 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ LL L L E+L G+ FKLYDT+G P D+ D+ RG+ +D + F + LE Sbjct: 361 HGMGLLTEALETL-DGEVLPGETVFKLYDTYGFPFDLTADVCRERGVT-LDEVGFQRELE 418 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR RARA S G+ T + + G T F GY+ L ED Sbjct: 419 AQRERARAASQ-FGADYTAAL-----DLEGETAFTGYERL-------EDE---------- 455 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + + ++G + +GQ VV D+TPFY E+GGQ GDTG DG+R Q+ Sbjct: 456 -----ARVTALVDREGNALAALEAGQHGVVVLDRTPFYGESGGQAGDTGYLEADGMRFQV 510 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 TD QK+ G +HH ++ G L S+ +D R NHSATHLLH AL +LG Sbjct: 511 TDTQKQG-GHHLHHGVLVEGRLDVGASVTPRVDASLRAATMRNHSATHLLHEALRQVLGE 569 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS +T + LRFDV+H + +T A+L +E VN I N M ++A A G Sbjct: 570 HVQQKGSLVTAERLRFDVSHFEAMTRAQLDEVERIVNAQILANAATRIEHMTLDEAKAKG 629 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 AAAL KY D VRV+++ +D S LCGGTHV+ +G+I +I+SE+ + AG+RRI Sbjct: 630 AAALFEAKYADSVRVLTIGADD---FSIELCGGTHVARSGDIGCFHILSEAGVAAGVRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQL 781 EA+TG+ A ++ Q+ K+ +A LK V R+E E R L +L K KL Sbjct: 687 EAVTGEGALAYFRDQEAKVARVAEQLKAKPEQVEARLEATLERNRTLEKELERLKAKLAS 746 Query: 782 NVE-DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 D+ ++A V ++ + V KEL+ ++D L+ K+ SG+I+L G++ ++K S+ Sbjct: 747 ATSGDMLADVREVAGVKLLAKQVEGVGGKELRGLLDQLKNKLGSGVIVL-GVAGDEKVSL 805 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + VT+DL R A DL + A+ + GG GGGR MAQ+GG A+A V S+++ Sbjct: 806 IAGVTDDLTARLKAGDLVKHVAEQV-GGKGGGRADMAQAGGSRPQALPDALASVPSWVE 863 >gi|212709394|ref|ZP_03317522.1| hypothetical protein PROVALCAL_00430 [Providencia alcalifaciens DSM 30120] gi|212688306|gb|EEB47834.1| hypothetical protein PROVALCAL_00430 [Providencia alcalifaciens DSM 30120] Length = 875 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/913 (44%), Positives = 561/913 (61%), Gaps = 64/913 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHTKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT E F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY D+EAF +W K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYATDDEAFDIWNKEIGVPVERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NY+ID+F+ LI A+ + TG N + RVI DH+RS +FL++DG++P Sbjct: 244 ISAVLQHVNSNYEIDIFRELIAAAAEATGATDLSNKSL--RVIADHIRSCAFLVSDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG E L+ L MG A EL + + L+E+ L+ Sbjct: 302 SNEGRGYVLRRIIRRAVRHGYMLGAKETFFYKLVSTLIKVMGPAAEELQRQQALVEKVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L K + L G+ AF+LYDT+G PLD+ D+ R + Sbjct: 362 TEEEQFARTLERGLQLLDEELASL-KGDTLEGETAFRLYDTYGFPLDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E+QR RAR S G G+ I + ++F GY + D Sbjct: 420 VDEAGFERAMEDQRRRARESS-GFGADYNALIKVDKR-----SEFSGY---------QHD 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + + A+ + G+ V+ +G + V+ D+T FYAE+GGQ+GDTG Sbjct: 465 EQ--------------QATIIALYKDGQPVDSLHTGDEGLVILDKTAFYAESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + +TD QK + I H VE G L + ++ + R + +NHSATHL Sbjct: 511 VLTNDSAQFTVTDTQKYGQAIG-HVGKVESGSLVVNHRIAAIVNSERRNAIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HVSQ GS + LRFD +H + +T +L+ +ED VN I QN + T Sbjct: 570 LHAALRQVLGEHVSQKGSLVNDKYLRFDFSHFEAMTQQQLRQVEDIVNAQIRQNSEIETE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A A GA AL G KY +RVRV+S+ G S LCGGTH S TG+I L I+S Sbjct: 630 LMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHASRTGDIGLFSILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA TG A HL Q E+L ++A LK ++V +V+ ++ R L+ Sbjct: 685 ESGTAAGVRRIEATTGAAAMEHLHAQSEQLSAIAHLLKGDVNSLVEKVKAALDKSRNLE- 743 Query: 773 IHAKRKLQLNVEDLS------CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823 K LQL + S K DV + ++S++ D K L++++D L+ +++S Sbjct: 744 ---KEILQLKDQQASQESASLSSKAKDVKGIKLLVSQLSDTDPKLLRTMVDDLKNQLKSA 800 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L S + K S+++ VT DL + A DL A+ + GG GGGRP MA +GG + + Sbjct: 801 IIVLSTTSGD-KVSIIVGVTNDLTAKIKAGDLVSYVAQQV-GGKGGGRPDMAMAGGTDVS 858 Query: 884 KADQAIAGVASFL 896 A+ V ++ Sbjct: 859 ALPTAMESVEQWV 871 >gi|238756253|ref|ZP_04617569.1| Alanyl-tRNA synthetase [Yersinia ruckeri ATCC 29473] gi|238705508|gb|EEP97909.1| Alanyl-tRNA synthetase [Yersinia ruckeri ATCC 29473] Length = 874 Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/912 (43%), Positives = 570/912 (62%), Gaps = 63/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEKWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT------TNDNFWSMAETGPCGPCSE 174 + +L++TVY+ D+EA+ +W G+ ++IIRI +DNFW M +TGPCGPCSE Sbjct: 124 PKEKLWVTVYETDDEAYDIWANDVGVPRERIIRIGDKGAAFASDNFWQMGDTGPCGPCSE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER+ Sbjct: 184 IFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++P+ Sbjct: 244 AAVLQHVNTNYEIDLFRDLITAVADVTGASDLSSKSL--RVIADHIRSCAFLISDGVIPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + +LG E L+ L T MG A EL Q + ++E+ L++ Sbjct: 302 NEGRGYVLRRIIRRAIRHGNILGAKETFFYKLVAPLITVMGPAADELKQQQAMVEQVLKT 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R L + Sbjct: 362 EEEQFARTLERGLALLDEELSQLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+E QR RAR S G G+ + SL A++F+GYD + Sbjct: 420 DEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDTASEFLGYDHIEQ-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V A+ + GE V+E +G+ VV +QTPFY E+GGQ+GD G Sbjct: 466 ---------------QATVIALFRNGEAVDEVHTGEDAVVVLNQTPFYGESGGQVGDEGV 510 Query: 534 ---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 A+ D I ++D QK + I H + RGILR S+ +D R ++ +NHSAT Sbjct: 511 LKSAMADFI---VSDTQKYGQAIG-HLGQLSRGILRVNDSVDAVVDSMRRNRIRLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL LG HV+Q GS + LRFD +H + + +++ +ED VN I +NLP+ Sbjct: 567 HLLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNAQIRRNLPIQ 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M ++A GA AL G KY+D+VRV+++ G S+ LCGG H + TG+I L I Sbjct: 627 TELMELDEAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHANRTGDIGLFRI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--- 767 ++ES AGIRRIEA+TG+ A + L Q + L+++A +K N+ ++ + + Sbjct: 682 LTESGTAAGIRRIEAVTGEGAMALLHQQSDLLQNIAHLVKGDSNNLTDKIRTVLDRSKAL 741 Query: 768 -RKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 R+LQ + ++ Q + S ++ V + + V++K L++++D L+ ++ S II Sbjct: 742 ERELQQLKDQQAAQESASLSASAKQVNGVKLLVSRLDNVEAKMLRTMVDDLKNQLGSAII 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L + + K S+++ VT+DL +R A +L A ++ KV GG GGGRP MAQ+GG + Sbjct: 802 VL-ATTADDKVSLIVGVTKDLTNRVKAGELIADIAQKV--GGKGGGRPDMAQAGGTDVQA 858 Query: 885 ADQAIAGVASFL 896 A+A V +++ Sbjct: 859 LPSALASVEAWV 870 >gi|206559783|ref|YP_002230547.1| alanyl-tRNA synthetase [Burkholderia cenocepacia J2315] gi|198035824|emb|CAR51715.1| alanyl-tRNA synthetase [Burkholderia cenocepacia J2315] Length = 874 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTAVYQLPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGTAYPELKEAEQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALADVDAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID Q R + NHSATHL+ Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + R+ Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVVE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744 Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D + I V ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LGALKSKLASSQGDELAQQAVEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AVEG-GKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|153826924|ref|ZP_01979591.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-2] gi|254291229|ref|ZP_04962025.1| alanyl-tRNA synthetase [Vibrio cholerae AM-19226] gi|149739227|gb|EDM53495.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-2] gi|150422923|gb|EDN14874.1| alanyl-tRNA synthetase [Vibrio cholerae AM-19226] Length = 860 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/907 (43%), Positives = 549/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|145628290|ref|ZP_01784091.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.1-21] gi|145638384|ref|ZP_01793994.1| alanyl-tRNA synthetase [Haemophilus influenzae PittII] gi|144980065|gb|EDJ89724.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.1-21] gi|145272713|gb|EDK12620.1| alanyl-tRNA synthetase [Haemophilus influenzae PittII] gi|309751524|gb|ADO81508.1| Alanyl-tRNA synthetase [Haemophilus influenzae R2866] Length = 874 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/914 (42%), Positives = 555/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLSNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + KD++L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALAQV-KDDVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFHDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNTIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|262149022|ref|ZP_06028166.1| alanyl-tRNA synthetase [Vibrio cholerae INDRE 91/1] gi|262031167|gb|EEY49787.1| alanyl-tRNA synthetase [Vibrio cholerae INDRE 91/1] Length = 873 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/894 (44%), Positives = 545/894 (60%), Gaps = 67/894 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVIAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN + +N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEVRRNHSIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAH 843 >gi|294788161|ref|ZP_06753404.1| alanine--tRNA ligase [Simonsiella muelleri ATCC 29453] gi|294483592|gb|EFG31276.1| alanine--tRNA ligase [Simonsiella muelleri ATCC 29453] Length = 873 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/908 (43%), Positives = 559/908 (61%), Gaps = 56/908 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R +L+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKYLQFFESKGHQIVRSSSLVPHNDPTLLFTNAGMNQFKDVFLGFDKRSYTRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI AW+ LT +L Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIHYAWEFLTSPEWLNLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L +TVY ED+EA+ +W K GL +KI+RI N DNFW M +TGPCGPC+E Sbjct: 123 KEKLLVTVYAEDDEAYNIWHKEIGLPENKIVRIGDNKGAKYASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEHIWGGIPGSPEEDGDRWIEIWNNVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF++L++A + TG+++ ++ + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQGVHSNYEIDLFQNLLKAVARETGVEF-SMDVPSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+P L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKEMGDAYPELREKQTQIEEALKA 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+VLL+ LS G + LNG++ FKLYDT+G P D+ DI C + Sbjct: 362 EETRFAQTLETGMVLLENALS--GSLKRLNGEIIFKLYDTYGFPYDLTADI-CREREVEM 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN+A++EQR+RARA K L TQF GY +R Sbjct: 419 DEDGFNKAMDEQRARARA-------AQNFKANTQLDYNGQDTQFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K V++ V A+ + E V E G+ +V DQTPFYAE+GGQ+GD G Sbjct: 462 K-------------VNATVIALYKDSEAVTELHEGETGAIVLDQTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + R ++ D QK +F + G L+ S++ ID R NHSATHL+ Sbjct: 509 ILAGENRFEVRDTQKIKAAVFGQFGVQVSGSLKVGDSVLAEIDNDIRDANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS +T + RFD++H++ IT E+ +E VN I N+ V I Sbjct: 569 HKALREVLGNHVEQKGSLVTAESTRFDISHNQAITPEEIAEVERRVNTAILANVAVDANI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHV+ TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GEFSTELCGGTHVARTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQL 772 S I AG+RR+E ITG A Q+ LK++ S +K ++ +V+ +++ + + L+ Sbjct: 684 SGIAAGVRRLEVITGLNALRWAQNQETLLKNIISEVKAQTEKDVLSKIQANANQTKALEK 743 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK--ELKSVMDALQKKIQSGIIMLV 828 AK K +L V + D+ +S +++++D++ L+ ++ L K +++L Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGTVSLVVAQIDAEASALRDIVTDLTGKSDKAVVLLA 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + K + Sbjct: 804 AVN-DGKVSLCAGVSKPLTAKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAAKLPET 861 Query: 889 IAGVASFL 896 +A V +++ Sbjct: 862 LASVENWV 869 >gi|254448289|ref|ZP_05061751.1| alanyl-tRNA synthetase [gamma proteobacterium HTCC5015] gi|198262156|gb|EDY86439.1| alanyl-tRNA synthetase [gamma proteobacterium HTCC5015] Length = 868 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/904 (42%), Positives = 563/904 (62%), Gaps = 45/904 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M++ ++IR FL++F GH ++PSSSL+P D TL+FTN+GMVPFK++F GQE+ Y Sbjct: 1 MTSSANIRKQFLDYFASKGHAVVPSSSLVPAGDDTLLFTNAGMVPFKHVFLGQEQRDYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI W+ LT+ L Sbjct: 61 ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYGWEFLTQVVGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TV++ED+EA +W K G+ D++ RI DNFW M +TGPCGPC+EIF+D G Sbjct: 121 PKEKLWVTVFEEDDEAADIWLKEIGVDPDRLSRIGAKDNFWQMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PG+ EE G+RYIE+WNLVFMQ+ + LPK S+DTGMGLER+A +LQ Sbjct: 181 EHIWGGPPGTPEEDGDRYIEVWNLVFMQYNRSQDGTLTPLPKPSVDTGMGLERLAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI A+ + G++ + I + VI DH+RS +FL+ DG+LP+NEGRGY Sbjct: 241 VHSNYEIDLFQALIHAAGKAVGVEKPSHEISSLNVIADHIRSCAFLVVDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA + LG +P L+ L +MG AYPEL +++ +E+ L+ E+ERF Sbjct: 301 VLRRIIRRACRHGYKLGQNQPFFYTLVEELVAQMGEAYPELSESQARVEQVLKKEEERFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL +G+ +L+ + L + I G+ F+LYDT+G P+D+ DI L ID+ + Sbjct: 361 ETLSQGMGILNQAIDSLDGERI-PGETVFQLYDTYGFPVDLTADIAREHEL-DIDLEGYE 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +EEQR RARA S G+ +E+I FS + ++F GY+ L Sbjct: 419 ACMEEQRQRARAASQ-FGADLSERIEFSEE-----SEFTGYEHLNH-------------- 458 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 +++ ++ G VE GQ+ VV + TPFYAE+GGQ+GD G + +G+ Sbjct: 459 ---------EAVISHLIVDGSEVERIAEGQQGMVVLNSTPFYAESGGQVGDRGVLVSEGV 509 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++ D QK+ G VH +E G L +++ +D RR +NHSATHL+H AL Sbjct: 510 RFRVDDTQKQG-GAIVHIGHLECGELSLNDNILAEVDMAKRRATELNHSATHLMHWALRE 568 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS + + LRFD +H +P+T +EL +ED VN I +N TR+M EDA Sbjct: 569 VLGDHVQQKGSLVNEEYLRFDFSHFQPMTDSELAQVEDLVNAEILKNRATQTRLMTMEDA 628 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA AL G KY D VRV+++ G HS LCGGTHV TG+I L ++ E + +G Sbjct: 629 KAAGAMALFGEKYGDEVRVLNI-----GDHSIELCGGTHVDRTGDIGLFKLIGEGGVASG 683 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RR+EAITG A+ + D+ ++ LA+ L+ +G+V +VE++ ++ R+L+ + K Sbjct: 684 VRRVEAITGIAAQQWVRQTDDTVRQLAARLRTDRGSVADKVEQLADKNRQLEKELERLKS 743 Query: 780 QLNVE---DLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + D++ +I + ++ + D+K L+S +D L+ K+ + I+L G + Sbjct: 744 KLASQAGGDIASQAVEIDGIKVLATALEGADTKVLRSTLDQLKDKLGAAAIVL-GAADGD 802 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K ++ VT+ R A +L A V GG GGGRP MAQ+GG + + A+A V + Sbjct: 803 KVRLVAGVTKSETSRIKAGELVNHVA-VQVGGRGGGRPDMAQAGGSDPAALEGALASVET 861 Query: 895 FLKK 898 ++++ Sbjct: 862 WVRE 865 >gi|167587422|ref|ZP_02379810.1| alanyl-tRNA synthetase [Burkholderia ubonensis Bu] Length = 874 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G E Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTESRPYTRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 63 SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERLAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLNNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALAEVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKAAQGLEYSGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID R + NHSATHL+ Sbjct: 511 LANASTRFAVGDTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VND I N P + R+ Sbjct: 571 HKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDDEIRRVEQIVNDEILANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHVS TG+I IV E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGFFKIVVE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744 Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D L ++ V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LGALKSKLASSQGDELALQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AV-EGGKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|145636626|ref|ZP_01792293.1| alanyl-tRNA synthetase [Haemophilus influenzae PittHH] gi|145270152|gb|EDK10088.1| alanyl-tRNA synthetase [Haemophilus influenzae PittHH] Length = 874 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/914 (42%), Positives = 555/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + KD +L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALAQV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI DV+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQTGSDFVKSAVKINDVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|229525206|ref|ZP_04414611.1| alanyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426] gi|229338787|gb|EEO03804.1| alanyl-tRNA synthetase [Vibrio cholerae bv. albensis VL426] Length = 860 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/907 (43%), Positives = 549/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERV 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|229530358|ref|ZP_04419746.1| alanyl-tRNA synthetase [Vibrio cholerae 12129(1)] gi|229332131|gb|EEN97619.1| alanyl-tRNA synthetase [Vibrio cholerae 12129(1)] Length = 860 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/907 (43%), Positives = 548/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSTLSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGNIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|114562241|ref|YP_749754.1| alanyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400] gi|122300463|sp|Q085Z9|SYA_SHEFN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114333534|gb|ABI70916.1| alanyl-tRNA synthetase [Shewanella frigidimarina NCIMB 400] Length = 874 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/913 (42%), Positives = 555/913 (60%), Gaps = 58/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + +R+ FL++F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 2 FQTTAELRSAFLKYFEDNGHQVVDSSSLVPTNDPTLLFTNAGMNQFKDVFLGMDKRNYTR 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW LT+ L Sbjct: 62 ATTSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTETLKL 121 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL +T+Y+ D+EA+ LW + G+ A+ +IRI N DNFW M +TGPCGPCS Sbjct: 122 PKERLCVTIYETDDEAYDLWTQKIGVPAENMIRIGDNKGGAFASDNFWQMGDTGPCGPCS 181 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER Sbjct: 182 EIFYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQADGEMLPLPKPSVDTGMGIER 241 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A ++Q +NY+ID+FK LI + ++ G+ N + RVI DH+RS +FLIADG++P Sbjct: 242 IAAIMQGVHSNYEIDIFKQLIAKTAEIIGVTDLENKSL--RVIADHIRSCAFLIADGVMP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG + L+P L + MG A L Q + ++E+ L+ Sbjct: 300 SNEGRGYVLRRIIRRAVRHGNKLGANDAFFYKLVPTLISVMGDAAIGLKQTQAIVEKALK 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGLV+LDG L+ L D L+GD FKLYDT+G P+D+ D+ R + Sbjct: 360 AEEEQFARTLERGLVILDGALNSLQGD-TLDGDTLFKLYDTYGFPVDLTADVCRERDI-N 417 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+ EQRSRA+A G+ ++ + T F GY L G Sbjct: 418 VDEAGFESAMAEQRSRAQAAG-NFGADYNSQLIIDAE-----TAFSGYTELTG------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +P V A+ G+ V+ +GQ VV D TPFYAE+GGQ+GD G Sbjct: 465 ------QPN----------VIALYVDGKAVDTVKAGQDAVVVLDNTPFYAESGGQVGDKG 508 Query: 533 CAIGDGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 DG+ + D QK A G H + +G L L +D + R + +NHS T Sbjct: 509 LLTADGVVFTVADTQKFGPATG---HQGQLAQGQLVIGQQLTAQVDKKLRHRTQLNHSVT 565 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LGSHVSQ GS + P+ LRFD H + + +ELK++ED VN I +N + Sbjct: 566 HLLHAALRQVLGSHVSQKGSLVNPERLRFDFAHFEAVKPSELKAVEDLVNTQIRRNHELC 625 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T M ++A GA AL G KY+D+VRVV++ G S LCGGTHV TG+I L I Sbjct: 626 TAEMAIDEAKEKGAMALFGEKYDDQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKI 680 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE+ I AG+RRIEA+TG A +++ Q L A LK +VV +++ ++ ++L Sbjct: 681 TSENGIAAGVRRIEAVTGIAAMAYIAEQQAMLDEAAQLLKSDSASVVVKLKAQLDKVKQL 740 Query: 771 Q--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825 + L K KL ++N + ++ + +D L+ + D L++K++S II Sbjct: 741 EKDLSQLKDKLAAAASADMAGDAVEINGVKLLVKQLDGIDPGSLRGLQDELKQKLKSAII 800 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G +K+ K +++ V+ DL + A +L + A+ + GG GGGRP MAQ+GG Sbjct: 801 VL-GTAKDGKVNLIAGVSNDLTKKVKAGELVAMVAQHV-GGKGGGRPDMAQAGGTQPENL 858 Query: 886 DQAIAGVASFLKK 898 A+A V ++ + Sbjct: 859 AAALALVEPWVNE 871 >gi|194290351|ref|YP_002006258.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424] gi|193224186|emb|CAQ70195.1| alanyl-tRNA synthetase [Cupriavidus taiwanensis LMG 19424] Length = 874 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/910 (44%), Positives = 546/910 (60%), Gaps = 59/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS IR+ FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y T+ Sbjct: 3 VSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYSRATS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLTK + L Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTKTYQLPAE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ A++I+RI N DNFW MA+TGPCGPCSEIF Sbjct: 123 KLWVTVYAEDDEAYDIWAKEVGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIE+WNLVFMQF + + LPK +DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEVWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF+ LI+A+ + T + N + +VI DH+R+ +FLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQALIKAAARETHIDNLNQNSL--KVIADHIRACAFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG P L+P L +MG AYPEL +A+ + E L++E+ Sbjct: 301 GRGYVLRRIIRRAIRHGYKLGQKTPFFHKLVPDLVEQMGQAYPELAEAQSRVTEVLKAEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ERF +T++ G+ +LD L+ L GK L+G++AFKL+DT G PLD+ QD+ C Sbjct: 361 ERFFETIENGMAILDAALAELKLKGGK--TLDGELAFKLHDTFGFPLDLTQDV-CREQEI 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 G+D +F+ A+ QR +ARA K+ L+ T F GY+ L Sbjct: 418 GVDEAAFDAAMSRQREQARA-------AGKFKMAAGLEYIGDKTVFHGYEKLE------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 L Q + V A+ G V+ GQ VV D TPFYAE+GGQ GD Sbjct: 464 ----LPQ-----------AKVTALYVDGAAVDTMQPGQTGVVVLDNTPFYAESGGQAGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D K +F H ++ G L+ ++ +D R + NHSATH Sbjct: 509 GVLKAGNAVFAVADTTKIQADVFGHQGTLQGGALKVGDAVSAQVDALRRARTVRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD +H+ +T A+++ +E+ VN I +N Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFSHNAALTDAQIRQVEEIVNAEILRNEDTHA 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M +DA+ SGA AL G KY D VRV+S+ S LCGGTHV TG+I L IV Sbjct: 629 EVMPFDDAVKSGAMALFGEKYADDVRVLSIGT------SKELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 E + AGIRR+EAITG A +L G D KL A+ LK +V R+ ++ E+ R L Sbjct: 683 MEGGVAAGIRRVEAITGDNALHYLQGLDAKLNEAAAVLKAQPSELVPRIGQVQEQVRALE 742 Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIM 826 +L K KL + D + DV + + +++D K L+ MD L+ K+QS I+ Sbjct: 743 KELERLKSKLAASQGDELAAQAVDVKGLKVLAAQLDGADVKTLRETMDKLKDKLQSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 L-GAVADGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860 Query: 887 QAIAGVASFL 896 QA+AGV+ ++ Sbjct: 861 QALAGVSEWV 870 >gi|229844682|ref|ZP_04464821.1| alanyl-tRNA synthetase [Haemophilus influenzae 6P18H1] gi|229812396|gb|EEP48086.1| alanyl-tRNA synthetase [Haemophilus influenzae 6P18H1] Length = 874 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/914 (43%), Positives = 555/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI+ + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIEKTAEIVGATDLSNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|117621345|ref|YP_858162.1| alanyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|205829972|sp|A0KPG1|SYA_AERHH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|117562752|gb|ABK39700.1| alanyl-tRNA synthetase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 874 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/911 (42%), Positives = 564/911 (61%), Gaps = 57/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IRT FLE+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STSEIRTAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LT+ L + Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWGFLTEVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EAF +W+K G+ AD+I+RI N DNFW+M +TGPCGPC+EI Sbjct: 124 ERLLVTVYATDDEAFDIWEKEVGVPADRIVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS EE G+R+IEIWN+VFMQF +Q LP+ S+DTGMGLER++ Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ G N + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKAAEIVGTSDLSNQSL--RVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + R LG TE L L +M ELI L+E LR E Sbjct: 302 EGRGYVLRRIIRRAVRHGRKLGATEVFFYKLAAELAAQMKDVAAELIAQLPLVERVLRIE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TLDRGL+LL+ VL++LG +++ G+V FKLYDT+G P D+ D++ R + GID Sbjct: 362 EEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREI-GID 420 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +E+QR+RA+ A S G+ K+ F T F GY K + E Sbjct: 421 EEGFKAEMEKQRARAKEASSFGVNYNEMLKLDFE-------TPFTGY------KTLTERT 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +V+ +D +G+ ++G + +V +QTPFYAE+GGQ+GD+G Sbjct: 468 RVVGIYKGVDEVSGL-----------------IAGDEAVIVLEQTPFYAESGGQIGDSGT 510 Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + DGI +TD K + I +H +E G L + +D + R+ +++NHS THL Sbjct: 511 LKVDDGI-FAVTDTVKAGKAI-IHKGYMELGTLEKGAEVEAVVDGERRQAIALNHSVTHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + + +RFD +H + +T A ++ +E+ VN+ I N + T+ Sbjct: 569 LHAALRQALGEHVTQKGSLVGAERMRFDFSHFEGMTMATIRRVEELVNNQIRANHEITTQ 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A ++GA AL G KY D VRVV + G +S+ LCGGTH TG+I I++ Sbjct: 629 LMDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES I AG+RRIEA+TG+ A + E+++ A+ +K Q + +V ++ ++ R Sbjct: 684 ESGIAAGVRRIEAVTGKAAIDFMHQVGEQIEEAAALVKGDQFCIADKVRQVLDKAKMMER 743 Query: 769 KLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L+ + AK Q + L +I + + D K L+ ++D L+ +++SG+++L Sbjct: 744 ELEQLKAKLAAQAGNDLLGQVIEIKGQKVLVAALEGADPKSLRGMLDELKNQMKSGVVLL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S E K +++ VT DL + A +L L A+ + GG GGGRP MAQ+GG Sbjct: 804 A-TSGEGKVNLIAGVTNDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPA 861 Query: 888 AIAGVASFLKK 898 A+ V S+L++ Sbjct: 862 ALQSVHSWLEE 872 >gi|238027796|ref|YP_002912027.1| alanyl-tRNA synthetase [Burkholderia glumae BGR1] gi|237876990|gb|ACR29323.1| Alanyl-tRNA synthetase [Burkholderia glumae BGR1] Length = 874 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/909 (42%), Positives = 542/909 (59%), Gaps = 55/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTESRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI +W+LLT + L + Sbjct: 62 TSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHYSWELLTSVYGLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSEI Sbjct: 122 EKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK SIDTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPSIDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQNLIKAAARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEGRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L ++L+G++AFKL+DT+G PLD+ D+ C Sbjct: 360 EERFLETIEHGMTILEAALAELDAKGGKLLDGELAFKLHDTYGFPLDLTADV-CREREVT 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L T F GY+ K +D Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLDYSGAKTTFHGYE-----KLALDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 K++ A+ G V EA +G++ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKIV-----------------ALYVGGTAVNEAKAGEQAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH VE+G L+ L +D + R + NHSATHL Sbjct: 510 TLANAAARFAVEDTLKVQADVIGHHGTVEQGALKVGDVLRAEVDAERRARTQRNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG HV Q GS + + RFD H+ P++ E++ +E VN I N P + R Sbjct: 570 MHKALREVLGGHVQQKGSLVDAEKTRFDFAHNAPLSDEEIRRVEAIVNAEILANAPGIIR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ ++A+ GA AL G KY D VRV+ + + S LCGGTHVS TG+I IV+ Sbjct: 630 NMSYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGFFKIVA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ D +L + A+ LK + R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQELDARLSTAAAMLKAQPAELTQRIAQVQDQLKSLEK 743 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K +L + D + DV ++ + DSK L+ D L+ K++ ++L Sbjct: 744 ELAALKSRLASSQGDELAQQAVDVKGLRVLAATLEGADSKTLRETADKLKDKLKHAAVVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG K + Sbjct: 804 AAV-EGGKVSLIAGVTAEASKQVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPGKLPE 861 Query: 888 AIAGVASFL 896 A+AGVA+++ Sbjct: 862 ALAGVAAWV 870 >gi|218516688|ref|ZP_03513528.1| alanyl-tRNA synthetase [Rhizobium etli 8C-3] Length = 588 Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/614 (57%), Positives = 438/614 (71%), Gaps = 27/614 (4%) Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDLDN G T H TFFEMLGNFSFG YFKE AI+LAW L+T+ F L + RL Sbjct: 1 CVRAGGKHNDLDNFGYTACHLTFFEMLGNFSFGDYFKENAIELAWKLVTEGFGLPKHRLL 60 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TVY EDEEA LWKKI+G S DKIIRI T+DNFW M +TGPCGPCSEIF DQGE + GG Sbjct: 61 VTVYSEDEEAATLWKKIAGFSDDKIIRIPTSDNFWQMGDTGPCGPCSEIFIDQGENVWGG 120 Query: 187 LPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 PGS+EE G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ + +D Sbjct: 121 PPGSAEEDGDRFLEFWNLVFMQFEQIEPGVRNPLPRPSIDTGMGLERMACILQGVQSVFD 180 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 DLF+ L A E G+K EG+ +HRVI DHLRSS+FLIADG+LP+NEGRGYVLRRIM Sbjct: 181 TDLFRTLTGAIEDAVGVKAEGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGYVLRRIM 238 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRAM +A+LLG EPL+ LLP L +MG AYPEL++A+ LI ETL+ E+ RF KTL+RG Sbjct: 239 RRAMRHAQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFRKTLERG 298 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 L LL + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F A++ Q Sbjct: 299 LSLLSDATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFTDAMQRQ 357 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 ++ AR+H G G TE +WF L+EK+GAT+F+GYD T Sbjct: 358 KAEARSHWAGSGEKATETVWFELREKHGATEFLGYD-----------------------T 394 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 +V+AIV+ G + E A +G KV+VV +QTPFY E+GGQ+GDTG D +++I+D Sbjct: 395 EAAEGVVQAIVKDGAVAEGAKAGDKVQVVVNQTPFYGESGGQMGDTGVISSDHGKIEISD 454 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 QKK EG+FVH V G +T ++VLT+D+ R +L NHSATHLLH AL +LG+HV Sbjct: 455 TQKKGEGLFVHSGTVVEGAFKTGDAVVLTVDHARRSRLRANHSATHLLHEALREVLGTHV 514 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + P+ LRFDV+H KP+T+ ELK +E+ N+I+ QN PV TR+M+ +DAIA GA Sbjct: 515 AQKGSLVAPERLRFDVSHPKPMTAEELKIVEEMANEIVLQNAPVTTRLMSVDDAIAEGAM 574 Query: 666 ALLGTKYNDRVRVV 679 AL G KY D VRVV Sbjct: 575 ALFGEKYGDEVRVV 588 >gi|153802555|ref|ZP_01957141.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-3] gi|124121918|gb|EAY40661.1| alanyl-tRNA synthetase [Vibrio cholerae MZO-3] Length = 860 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/909 (43%), Positives = 549/909 (60%), Gaps = 67/909 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRTYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L +L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGLVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ +G+L T + +D + R +S+NHSATHLL Sbjct: 511 LKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLATGDQVDAIVDEKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T AE+K +E VN I N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEIKEVERLVNQEIRHNHNIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A +L Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYLDAQQAQHDAKVSEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKALRGMVDDLKNQLSSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFLKK 898 V +++ + Sbjct: 850 ESVDAWIAE 858 >gi|145632173|ref|ZP_01787908.1| alanyl-tRNA synthetase [Haemophilus influenzae 3655] gi|144987080|gb|EDJ93610.1| alanyl-tRNA synthetase [Haemophilus influenzae 3655] Length = 874 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/914 (43%), Positives = 554/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLSNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMESQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKILANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|256822655|ref|YP_003146618.1| alanyl-tRNA synthetase [Kangiella koreensis DSM 16069] gi|256796194|gb|ACV26850.1| alanyl-tRNA synthetase [Kangiella koreensis DSM 16069] Length = 875 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/908 (43%), Positives = 555/908 (61%), Gaps = 55/908 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL FF+ GH ++ SS LIP NDPTL+FTN+GMV FK+ F G +K Y T+ Sbjct: 3 TNQIRNAFLTFFENKGHHIVDSSPLIPANDPTLLFTNAGMVQFKDCFLGIDKRSYTRATS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+LLT+EF L + Sbjct: 63 SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIAYCWELLTEEFKLPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY+ED+EAF +W G AD+I RI N DNFW+M +TGPCGPCSE+F Sbjct: 123 KLWVTVYEEDDEAFDIWVNDIGFPADRISRIGDNKGERYASDNFWAMGDTGPCGPCSEVF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D GE I GG PG+ EE G+R+IEIWNLVFMQF +Q LPK S+DTGMGLER+A Sbjct: 183 YDHGEEIWGGPPGTPEEDGDRFIEIWNLVFMQFNRQKDGTMERLPKPSVDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 +LQ +NY+IDLF+HLI+++ + +K N + RVI DH+RS +FLI DGI+P+NE Sbjct: 243 ILQGVHSNYEIDLFQHLIKSTADLLKVKDLDNKSL--RVIADHIRSCAFLILDGIVPSNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L MG AYP L++ K LIE+ L E+ Sbjct: 301 GRGYVLRRIVRRAVRHGHQLGAKGIFFAKLVQPLIEVMGEAYPALVEQKELIEKVLAKEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E F +TLD+G+++LD ++ L + ++GD FKLYDT+G P D+ DI +GL + Sbjct: 361 EAFARTLDKGMLILDQDIADLVETNGKTISGDTVFKLYDTYGFPQDLTADIAREKGLE-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+ +QR RARA S GT FS+ E+ ++F GY + Sbjct: 420 DWDGFEKAMNQQRERARAAS---NFGTDYNDNFSIDER---SEFTGYHYTQ--------- 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + +V +++ + V+E G+K V+ +TPFYAEAGGQ+GDTG Sbjct: 465 --------------QNVVVTRLLKGEDEVKELDQGEKGVVILAKTPFYAEAGGQVGDTGR 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G G + D QK + I H V+RG + L +D + R+ NHSATHLL Sbjct: 511 LFGCGATFIVEDTQKLGDAI-AHIGYVQRGSFSNDAELTAEVDAERRQHTMRNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ILG+HV+Q GS + P+ LRFD ++ +P+T +L+ IE VN I +N V Sbjct: 570 HAALRDILGTHVTQKGSLVGPERLRFDFSNPEPVTQEQLRQIEALVNQKIYENHAVEAAT 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ ++A GA AL G KY D VRV+++ S LCGGTHV TG+I I+SE Sbjct: 630 MSMDEAKEHGAMALFGEKYGDEVRVLTMS-----PFSVELCGGTHVQRTGDIGAFKILSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-L 772 S I AGIRRIEA TG A + + + L+S+ LK V +V ++ ++ R+L+ Sbjct: 685 SGIAAGIRRIEATTGAGAVNWMQSTEASLQSIGKLLKSEPSQVAEKVNQLMDKSRQLEKT 744 Query: 773 IHA-KRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLV 828 I A + KL + + D+N + ++++ V++K L+ + D L+ K+ S I++L Sbjct: 745 IEALQSKLASSQGSDLASQAEDLNGIKLLVAKLEGVEAKALRDIQDQLKNKLGSSIVVL- 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 GI++E K S+++ V++DL + A +L + A + GG GGGRP MAQ+GG + A Sbjct: 804 GIAEEDKVSIIVGVSKDLTGKVKAGELVNMVASQV-GGKGGGRPDMAQAGGKDPAALPAA 862 Query: 889 IAGVASFL 896 + V ++ Sbjct: 863 LDSVKPWV 870 >gi|148262305|ref|YP_001229011.1| alanyl-tRNA synthetase [Geobacter uraniireducens Rf4] gi|205830100|sp|A5GD98|SYA_GEOUR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146395805|gb|ABQ24438.1| alanyl-tRNA synthetase [Geobacter uraniireducens Rf4] Length = 876 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/895 (43%), Positives = 550/895 (61%), Gaps = 44/895 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F +FF++ GH ++ SS+LIP NDPTL+FTN+GM FK++F G EK Y + QK Sbjct: 6 IRAQFFKFFEERGHTVVESSNLIPRNDPTLLFTNAGMNQFKDVFLGLEKRDYVRACSSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE LD+ RLY Sbjct: 66 CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKELKLDKDRLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TVY +D+EA +W + G+ ++I R DNFWSM +TGPCGPC+EIF+D G G Sbjct: 126 VTVYTDDDEAADIWNRQEGVPLERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGPGTGCG 185 Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P + E G +RY+EIWN VFMQF + + LPK S+DTGMGLER++TV+Q T+N Sbjct: 186 SP-TCEVGCDCDRYMEIWNNVFMQFNRDAQGNLTPLPKPSVDTGMGLERISTVMQGVTSN 244 Query: 244 YDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 YD DL + +I+ E+++G +Y + + V+ RVI DH R+ +FLI DGILP+NEGRGYVL Sbjct: 245 YDTDLLQGIIKHVEKLSGKRYRQDERDDVSMRVIADHSRAITFLICDGILPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRRA +A++LG+ EP + ++ A+ T MG AYPEL++ + I++ + +E+ERF +T Sbjct: 305 RRIMRRAARHAKMLGFAEPALYRIVDAVNTMMGDAYPELLEREEYIKKVIHAEEERFIET 364 Query: 362 LDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL +L+ ++ L K+ ++ G+V FKLYDT+G P+D+ DI+ G ID F Sbjct: 365 LDRGLAILNEEVAALKKEGKSVVPGEVIFKLYDTYGFPVDLTADIVENEGFT-IDEDGFA 423 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +E QR +AR + G G +I+ +L + + F+GY Sbjct: 424 LCMERQRLQARENWKGSGEEGLAEIYKTLHGRGIRSAFVGYS------------------ 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S + AI+++G V EAV+G+ VEVV D TPFY +GGQ GDTG Sbjct: 466 -----EQTAYSAITAILREGAEVAEAVAGEMVEVVVDTTPFYGASGGQAGDTGVISTGSA 520 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 L++ K + VH A+V G ++ + L + + R + NH+ATHLL AL Sbjct: 521 HLRVVATSKPFPDLTVHRALVTEGTVKAGDAADLRVATEVRGATARNHTATHLLQSALRQ 580 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS +T + LRFD TH +T EL+ +E+ VN + N V + M +A Sbjct: 581 VLGEHVKQAGSLVTAERLRFDFTHFSAMTVEELRRVENIVNTYVMDNADVKSLEMAATEA 640 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + SGA AL G KY DRVRVV V G SS LCGGTHV + G+I IV E+ I AG Sbjct: 641 MQSGATALFGEKYGDRVRVVKV-----GEVSSELCGGTHVRAAGDIGFFKIVGEAGIAAG 695 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+TG A ++ +++ +S+A +K G + +V+ + ++LQ + Sbjct: 696 VRRIEALTGSGALEYVQQLEDEQRSIAVLVKAEGGTALDKVDRLLARQKELQREVEALQA 755 Query: 780 QLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +LN DL + + ++ + D K L+ + D+L+ ++QSG+I ++G Sbjct: 756 RLNASRSADLLAGARETNGIKVLAAKVEMDDPKGLRELADSLKDRLQSGVI-VIGCVSAG 814 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 KA++L+ VT+DL DR A D+ + A ++ GG GGG+P +AQ+GG D+A+ Sbjct: 815 KANLLVAVTKDLSDRLRAGDIIKSLAPII-GGSGGGKPELAQAGGTKPENLDEAL 868 >gi|145300678|ref|YP_001143519.1| alanyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida A449] gi|205829973|sp|A4SS99|SYA_AERS4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|142853450|gb|ABO91771.1| alanyl-tRNA synthetase [Aeromonas salmonicida subsp. salmonicida A449] Length = 874 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/913 (42%), Positives = 569/913 (62%), Gaps = 61/913 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FLE+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L + Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWEFLTGTLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY+ D+EAF +W G+ ++I+RI N DNFW M++TGPCGPC+EI Sbjct: 124 ERLLVTVYETDDEAFNIWANEVGVPVERIVRIGDNKGAAFASDNFWQMSDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS EE G+R+IEIWN+VFMQF +Q LP+ S+DTGMGLER++ Sbjct: 184 FYDHGDHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ G N + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQSL--RVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + R LG T+ L L +M ELI L++ LR E Sbjct: 302 EGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVGAELIAQLPLVKRVLRIE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TLDRGL+LL+ VL++LG +++ G+V FKLYDT+G P D+ D++ R + GID Sbjct: 362 EEQFVRTLDRGLLLLEDVLANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREI-GID 420 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 FN +E+QR+RA+ A S G+ K+ F T F GY Sbjct: 421 EEGFNAEMEKQRARAKEASSFGVNYNEVLKLDFE-------TPFTGY------------- 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K L QK +S+V I + G V ++G++ VV +TPFYAE+GGQ+GD G Sbjct: 461 KQLSQK---------TSVV-GIYKDGVEVNGLIAGEEAVVVLAETPFYAESGGQVGDCGV 510 Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + DGI +TD QK + I +H +E G L + +D + R+ +++NHS THL Sbjct: 511 LKVDDGI-FAVTDTQKAGKAI-IHKGYLELGTLEKGALVEAVVDGERRQAVALNHSVTHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + + +RFD +H + +T A ++ +E+ VN I N + T+ Sbjct: 569 LHAALRQALGDHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNAQIRANHDIATQ 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A ++GA AL G KY D VRVV + G +S+ LCGGTH TG+I I++ Sbjct: 629 VMDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES I AG+RRIEA+TG+ A + E+++ A+ +K Q ++ +V +I ++ R Sbjct: 684 ESGIAAGVRRIEAVTGKGAIDFMHQMGEQIEEAAALVKGDQFSIADKVRQILDKSKMMER 743 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825 +L+ + AK Q + LS ++ ++N +I+ + D K L+ ++D L+ +++SG++ Sbjct: 744 ELEQLKAKLAAQAGSDLLS--QVIEINGQKVLIAALEGADPKSLRGMLDELKNRMKSGVV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L S + K +++ VT DL + A +L L A+ + GG GGGRP MAQ+GG Sbjct: 802 LLA-TSSDDKVNLIAGVTSDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAV 859 Query: 886 DQAIAGVASFLKK 898 A+ V S+L++ Sbjct: 860 PAALQSVHSWLEE 872 >gi|148826541|ref|YP_001291294.1| alanyl-tRNA synthetase [Haemophilus influenzae PittEE] gi|229845865|ref|ZP_04465977.1| alanyl-tRNA synthetase [Haemophilus influenzae 7P49H1] gi|205830060|sp|A5UDR0|SYA_HAEIE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148716701|gb|ABQ98911.1| alanyl-tRNA synthetase [Haemophilus influenzae PittEE] gi|229810869|gb|EEP46586.1| alanyl-tRNA synthetase [Haemophilus influenzae 7P49H1] Length = 874 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/914 (43%), Positives = 554/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKSAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSIIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLTQIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEAITGQ A L Q L A LK +V +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAITGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVITQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|297569857|ref|YP_003691201.1| alanyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2] gi|296925772|gb|ADH86582.1| alanyl-tRNA synthetase [Desulfurivibrio alkaliphilus AHT2] Length = 879 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/908 (43%), Positives = 555/908 (61%), Gaps = 43/908 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR F+E+F + GH L+ SS L+P DPTL+FTN+GMV FK +FTG+EK Y Sbjct: 2 NGNEIRQRFIEYFTQRGHTLVESSPLVPHEDPTLLFTNAGMVQFKKVFTGEEKRDYSRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI++AWD LTKE L Sbjct: 62 TCQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRMAWDFLTKEIGLSP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L+++VY++D+EA+ +W+KI L +I+R+ DNFW+M +TGPCGPCSEI DQGE Sbjct: 122 AKLWVSVYEDDDEAYAIWEKIEDLPPGRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGEA 181 Query: 183 I--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + P G + +R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+A V Q K Sbjct: 182 VACPEENCGVDCDCDRFLEIWNLVFMQYERDEQGNLTPLPKPSIDTGMGLERIAAVAQGK 241 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 NNYD DLF+ +IQ + Q+ G+ Y N + RVI DH R+++FL+ADG+LP+NEGRG Sbjct: 242 INNYDSDLFQPIIQRTCQLAGISYGANLRADTALRVIADHARATTFLVADGVLPSNEGRG 301 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRIMRRA+ + R LG TEP + + A+ MGSA+ L +++ L+ + +R E+ERF Sbjct: 302 YVLRRIMRRAVRFGRSLGLTEPFLGEVCSAVADGMGSAWGHLGESRELLGKVVRHEEERF 361 Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TLD GL +L + L + I + GD FKLYDT+G P+DI +D+ GL D Sbjct: 362 LETLDHGLGMLASEIERLQGEGIKTIAGDFIFKLYDTYGFPVDIAKDVAQEEGLQA-DEE 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+ QR ++R G G G + L E+ ++F+GY+ R Sbjct: 421 GFGAAMARQREQSRRSWKGGGLGELGPGFKELLERGVKSRFVGYETRRHH---------- 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 ++V + Q+GE+ +EA +G V +V D+TPFYAEAGGQ+GD G G Sbjct: 471 ------------GTLVAVLDQRGELHDEAAAGTLVSLVCDETPFYAEAGGQVGDWGEIAG 518 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 R ++ + K E + VH A V G L ++L + RRQ + +H+ATHLLH A Sbjct: 519 GQGRAKVLNTLKIGEHLVVHQAEVAEGKLAVGAEVLLAVAEGRRRQTAAHHTATHLLHAA 578 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS + + LRFD TH P++ E++ +E+ VN+ I N + + R Sbjct: 579 LRRVLGEHVKQAGSLVDAERLRFDFTHFSPLSREEIRRVEELVNEEIRANTRLEVATLPR 638 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A+ SGAAAL G KY D VRVV+V G S LCGGTHV +TGEI L I SE I Sbjct: 639 EEALQSGAAALFGEKYGDTVRVVAV-----GDFSKELCGGTHVGATGEIGLFKITSEGGI 693 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 A RRIE G A S + +++++ A LK + + R++++ ++L QL Sbjct: 694 AASTRRIEGCCGGLALSRVHALEDEVQQWAGRLKTNPAELGVRLDKLLARQKELERQLAE 753 Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIIS--EVDS-KELKSVMDALQKKIQSGIIMLVGI 830 A + + + E + + +VN + EVDS K L+ D L+ K+ SGI +L Sbjct: 754 LAAKASRFDAESV-LRQATEVNGIKVATCRLEVDSVKTLREAGDKLRDKMGSGIAVLAA- 811 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K S+L +V++DL DR+ A D+ + +A+++ GG GGGRP MAQ+GG + K D A+A Sbjct: 812 EPAGKVSLLALVSKDLTDRYRAGDIVKQAAQLV-GGSGGGRPDMAQAGGGDPEKIDHALA 870 Query: 891 GVASFLKK 898 V + + Sbjct: 871 AVPGIVAE 878 >gi|197284276|ref|YP_002150148.1| alanyl-tRNA synthetase [Proteus mirabilis HI4320] gi|227357820|ref|ZP_03842168.1| alanyl-tRNA synthetase [Proteus mirabilis ATCC 29906] gi|194681763|emb|CAR40964.1| alanyl-tRNA synthetase [Proteus mirabilis HI4320] gi|227161930|gb|EEI46948.1| alanyl-tRNA synthetase [Proteus mirabilis ATCC 29906] Length = 875 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/910 (43%), Positives = 551/910 (60%), Gaps = 56/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F G + Y T Sbjct: 4 STAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDNRPYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGKEWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYATDDEAYDIWNKEVGVPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PG+ EE G+RYIEIWN+VFMQF +++ LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGTPEEDGDRYIEIWNIVFMQFNRKSDGTMDPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NYDIDLF+ LI++ +VT N + RVI DH+RS SFL+ DG++P Sbjct: 244 ITAVLQHVNSNYDIDLFRALIKSVAEVTNATDLANKSL--RVIADHIRSCSFLVCDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG + L+ L M A EL + ++E+ L+ Sbjct: 302 SNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIDVMAEAGKELKNQQEIVEKVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L L D L G+ AF+LYDT+G PLD+ D+ R + Sbjct: 362 TEEEQFARTLERGLQLLDEELEKLTGD-TLAGETAFRLYDTYGFPLDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ E I + + F GYD Sbjct: 420 VDEEGFELAMEEQRKRARESS-GFGTDYNELIKVDSR-----SDFSGYD----------- 462 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N + AI G+ V E +G++ + D+T FYAE+GGQ+GD G Sbjct: 463 ------------HNEQQGTINAIFHNGQTVTELKAGEEGIIFLDKTAFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 IG + ++TD QK + I H V G + ID R + +NHSATHL Sbjct: 511 LLIGKDSQFEVTDTQKYGKAI-GHIGKVISGSFIVNHKINAVIDVARRDAIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS + LRFD +H + + +L+ IED VN I N PVVT Sbjct: 570 LHAALRQVLGTHVTQKGSLVNDKYLRFDFSHFEAVKPEQLREIEDIVNAQIRLNSPVVTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ EDA GA AL G KY +RVRV+++ G S+ LCGGTH + TG+I L I+S Sbjct: 630 LMDLEDAKQKGAMALFGEKYEERVRVLTM-----GDFSTELCGGTHAARTGDIGLFRIMS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEAITG A + Q + + +A LK N+V +++ + E+YR L+ Sbjct: 685 ESGTAAGIRRIEAITGATAIESVHEQSDLISLVAHALKSDGSNLVEKIKTVQEKYRSLEK 744 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ S + + + ++ V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKDQQAAQESSSLGSQAKNVKGIKLLVRELNNVEPKMLRTMVDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 IS + K S+++ VT+DL + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 805 STIS-DGKVSLIVGVTKDLTAKIKAGELISFVAQQI-GGKGGGRPDMAQAGGTDVEALPA 862 Query: 888 AIAGVASFLK 897 A+A V +++ Sbjct: 863 ALASVDEWVE 872 >gi|15603152|ref|NP_246224.1| alanyl-tRNA synthetase [Pasteurella multocida subsp. multocida str. Pm70] gi|13431888|sp|P57933|SYA_PASMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|12721647|gb|AAK03371.1| AlaS [Pasteurella multocida subsp. multocida str. Pm70] Length = 874 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/915 (43%), Positives = 557/915 (60%), Gaps = 60/915 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SS+L+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHTKGHQIVASSALVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHFGWEYLTSPRWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPAEKLWVTVYETDDEAYDIWNKEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+F+ LI ++TG K N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKVAELTGEKDLSNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A + + + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLIDVMAEAGIGVKEKQATVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+++ K E L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLALLDEALANVKKGE-LSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID + F++ +E QR RA++ S G+ ++ G T F GY S+ + Sbjct: 418 T-IDEVGFDREMEAQRLRAQSASQFGMDYNNVIRV-------EGCTTFEGY---TASESL 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + V A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 467 AK--------------------VTALFADGKPVERIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G G ++ D QK + +F H + G L S+ +D + R S+NHSA Sbjct: 507 DSGYLNGQGFSFEVKDTQKYGQ-VFGHIGELVSGSLTVGKSVNAVVDVKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV Q GS ++ LRFD H + IT A+L IE VN I N + Sbjct: 566 THLLHAALRQVLGEHVVQKGSLVSDVALRFDFAHHEAITKAQLVEIECLVNQQIRANHLI 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T +M E A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTELMELEAAKAKGAMALFGEKYADQVRVLTM-----GDFSIELCGGIHAKRTGDIGLCK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I +E++I AGIRRIEAITG+ A S L Q L A LK ++V +++++ ++ +K Sbjct: 681 ITTETAIAAGIRRIEAITGENAMSWLHQQQALLAQSADLLKSDVNSIVEKIQQLQDKAKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ++ K +Q DL S KI DV+ + + VD+K L+ V+D L+ ++ S Sbjct: 741 AEKELQVLKEKSAMQAG-SDLARSAVKINDVSVIVQKLDGVDTKSLRVVVDDLKNQLSSA 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+ + E+K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 800 VIVFASVV-EEKVNLIVGVTSDLTSKVKAGELVNLLAQQV-GGKGGGRPDMAMAGGTQIE 857 Query: 884 KADQAIAGVASFLKK 898 D A++ ++LK+ Sbjct: 858 NVDHALSFATTWLKE 872 >gi|301169533|emb|CBW29134.1| alanyl-tRNA synthetase [Haemophilus influenzae 10810] Length = 874 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/914 (43%), Positives = 554/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VTQAIKVAQDWLNK 872 >gi|217972432|ref|YP_002357183.1| alanyl-tRNA synthetase [Shewanella baltica OS223] gi|217497567|gb|ACK45760.1| alanyl-tRNA synthetase [Shewanella baltica OS223] Length = 874 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/907 (43%), Positives = 561/907 (61%), Gaps = 56/907 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y TT Sbjct: 5 TAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRATT 64 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 65 AQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPKE 124 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEIF Sbjct: 125 RLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEIF 184 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 185 YDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAA 244 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 ++Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FLIADG++P+NE Sbjct: 245 IMQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEKSL--RVIADHIRSCAFLIADGVMPSNE 302 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG TE L+P+L MG A L + + ++E+ L++E+ Sbjct: 303 GRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAEE 362 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E+F +TL+RGL +LD L+ L K + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 363 EQFARTLERGLGILDAALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VDE 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 421 AGFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFSGYTELAG---------- 464 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + AI Q GE V +G + VV D TPFYAE+GGQ+GD G + Sbjct: 465 -------------QAKITAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQLV 511 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 +G+ + D QK + H ++ G L + +D + R + +NHS THLLH Sbjct: 512 ANGVEFTVNDTQKYGQATG-HQGVLATGSLSVGQVVEAKVDKKLRHRTQLNHSVTHLLHA 570 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN I +N + T M Sbjct: 571 ALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEMG 630 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE+ Sbjct: 631 IDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEAG 685 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ A Sbjct: 686 IAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEMA 745 Query: 776 KRKLQLNV---EDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + K +L DL I VN + + V++ L+ + D L++K++S II+L G Sbjct: 746 QLKDKLAAAASADLVGDAIVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-GT 804 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++E K +++ V+ DL+ + A +L A ++A+V GG GGGRP MAQ+GG D A+ Sbjct: 805 AQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFL 896 A V ++ Sbjct: 863 AQVLPWI 869 >gi|78221425|ref|YP_383172.1| alanyl-tRNA synthetase [Geobacter metallireducens GS-15] gi|123572914|sp|Q39Z77|SYA_GEOMG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78192680|gb|ABB30447.1| alanyl-tRNA synthetase [Geobacter metallireducens GS-15] Length = 876 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/903 (41%), Positives = 547/903 (60%), Gaps = 42/903 (4%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF+ GH ++PSS LIP NDPTL+F N+GM FK+ F G E Y T+ Sbjct: 4 NELRARFLKFFEDRGHTVVPSSLLIPHNDPTLLFANAGMNQFKDCFLGMEDRGYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTK+ LD+ R Sbjct: 64 QKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLDKDR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY+TVY +D+EA +W G+ ++I R DNFWSM +TGPCGPCSEIF+D G + Sbjct: 124 LYVTVYTDDDEAADIWHHQEGVPRERIFRFGEKDNFWSMGDTGPCGPCSEIFWDNGPEVG 183 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + + +RY+EIWN VFMQF + LPK S+DTGMGLER+ TV+Q + Sbjct: 184 CGSPDCTVGCDCDRYMEIWNNVFMQFNRSADGTMTPLPKPSVDTGMGLERICTVMQGVKS 243 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NYD DL + +I+ E+++G +Y N + V+ RVI DH R+++FLI DG+LP+NEGRGYV Sbjct: 244 NYDTDLLQGVIRHVERLSGKRYRENEKDDVSMRVIADHARATTFLICDGVLPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRA +A++LG+ EP++ + A+ MG +YPEL++ + I++ +R+E+ERF + Sbjct: 304 LRRIMRRAARHAKMLGFAEPVLYRTVDAVNEMMGGSYPELLEREEYIKKVIRAEEERFAE 363 Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLDRGL +L+ ++ L + ++ G+ F+LYDT G P D+ DI+ A G ID F Sbjct: 364 TLDRGLAILNDAVAQLKGEGKTVIPGETLFRLYDTFGFPTDLTADIVRAEGFT-IDEPGF 422 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + QR +AR H G G + L + + F+GYD Sbjct: 423 EACMGRQREQAREHWKGSGEEGIAAVHKELHNRGVRSVFVGYD----------------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + +I++ G V EA +G+ VE++ D+TPFY E+GGQ GDTG Sbjct: 466 ------EKCSYAAIGSILRGGSEVAEAKAGEDVEIITDRTPFYGESGGQAGDTGTISTGS 519 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++T + + VH V G ++T + L + +R + NH+ATHLL AL Sbjct: 520 AHVRVTGTIRPYPDLIVHRGTVVEGTIKTGEACDLKVASVDRDATARNHTATHLLQTALR 579 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS + PD LRFD TH +T E++ +E+ VN I +N V R M E+ Sbjct: 580 RVLGEHVKQAGSLVAPDRLRFDFTHFAAMTPEEIRRVEEIVNTFIMENDTVHAREMAVEE 639 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ SGA AL G KY DRVRVV V G S+ LCGGTHV + G+I I+SE+ I A Sbjct: 640 AMESGATALFGEKYGDRVRVVKV-----GEVSAELCGGTHVRAAGDIGSFKILSEAGIAA 694 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG A H+ +++ + +A+ +K G+ + R++++ R++Q + Sbjct: 695 GVRRIEALTGMGALRHIQELEDEKRQIAALMKAEGGDNIDRLQKLLARQREMQREIETLQ 754 Query: 779 LQLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 QLN DL ++ V ++ + D K+L+ + D L+ ++ SG++ L G K+ Sbjct: 755 GQLNAAKSGDLLADVREVNGVKVLATKVEVDDPKKLRELADTLKDRLGSGVVAL-GCEKD 813 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 +A++L+ VT+DL R A D+ R A V+ GG GGG+P +AQ+GG + +A+ V Sbjct: 814 GRANLLVAVTKDLAGRIRAGDIIRQLAPVI-GGSGGGKPELAQAGGSQPDMLAEALGKVY 872 Query: 894 SFL 896 + Sbjct: 873 GLI 875 >gi|170727677|ref|YP_001761703.1| alanyl-tRNA synthetase [Shewanella woodyi ATCC 51908] gi|205830209|sp|B1KPS5|SYA_SHEWM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169813024|gb|ACA87608.1| alanyl-tRNA synthetase [Shewanella woodyi ATCC 51908] Length = 874 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/910 (42%), Positives = 558/910 (61%), Gaps = 56/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G++K Y T Sbjct: 4 TTAALRSAFLEYFRTNGHQVVDSSSLVPVNDPTLLFTNAGMNQFKDVFLGEDKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+E L + Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAISFAWNFLTQELKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D+EAF +W K G+ A+ +IRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYETDDEAFDIWTKEIGVPAESLIRIGDNKGAPYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PG+ EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ G+ N + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKTAEILGVTDLENKSL--RVISDHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T L+P L MG A L++ + ++E++L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATSSFFYKLVPTLIEVMGDAAKGLVETQAIVEKSLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LDG L+ L K ++L+G+ AFKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDGALNEL-KGDVLDGETAFKLYDTYGFPVDLTADVCREREIT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A +G + + + T F GY Sbjct: 420 EAGFEVAMAEQRSRAQA------AGQFDTDYNDSLKIDEETHFSGY-------------- 459 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +LT V AI + GE + +G+ +V D TPFY E+GGQ GD G Sbjct: 460 -------TELT--AQGKVTAIYKAGESTDSLNAGEDAVIVLDSTPFYGESGGQCGDKGLL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+ + D QK + + H V G + +L +D + R + +NHS THLLH Sbjct: 511 TAKGVEFDVKDTQKYGQAVG-HQGTVNSGSISVGDTLEAIVDKKLRHRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + + LRFD +H + + ELK++ED VN I +N + +M Sbjct: 570 AALRQLLGTHVTQKGSLVDAERLRFDFSHFEGVKPEELKAVEDLVNTQIRRNHKLSADVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + A GA AL G KY D VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 DMDQAKERGAMALFGEKYTDEVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 I AG+RRIEA+TG A +++ Q +L A+ LK +VV +++ + + L +L Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAAQKAELDQAAALLKADSNSVVTKLKAQLDRTKLLEKEL 744 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + VN +I + VD+ L+ + D L++K+ SG+++L Sbjct: 745 SQLKDKLAAATSADLAGEAKQVNGAKVLIKKLEGVDAGALRGLQDELKQKLGSGVVVLA- 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I+ E K ++++ VT+DL + A +L A ++A+V GG GGGRP MAQ+GG K D A Sbjct: 804 IAGEAKVNLIVGVTKDLTAKVKAGELVASIAAQV--GGKGGGRPDMAQAGGTEPEKLDGA 861 Query: 889 IAGVASFLKK 898 + V +L++ Sbjct: 862 LEQVLPWLEE 871 >gi|91784488|ref|YP_559694.1| alanyl-tRNA synthetase [Burkholderia xenovorans LB400] gi|122970272|sp|Q13W97|SYA_BURXL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91688442|gb|ABE31642.1| alanyl-tRNA synthetase [Burkholderia xenovorans LB400] Length = 874 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/910 (42%), Positives = 548/910 (60%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L + Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSEI Sbjct: 122 DKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQALIKAAARETGVSDLTNNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG ++ L +MG+AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGAAYPELKEAEQRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+G L+ L G + L+G++AFKL+DT+G PLD+ D+ C Sbjct: 360 EERFFETIEHGMSILEGALAELEAGSSKTLDGELAFKLHDTYGFPLDLTADV-CREREVT 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F++A+ QR +ARA K+ L+ T F GYD + + +D Sbjct: 419 VDEAAFDEAMTRQREQARA-------AGKFKMAQGLEYSGEKTTFHGYD-----EVVFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V++A GQ+ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVI-----------------ALYVEGASVQQASQGQQAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +R ++D K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 510 VLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV Q GS + D RFD H+ P+T +++ +E+ VN + N P + R Sbjct: 570 MHKALREVLGTHVQQKGSLVDADKTRFDFAHNAPLTDEQIRRVEEIVNAEVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV Sbjct: 630 VMSFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVM 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A + D ++ + A+ LK + R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRIVQVQDQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K K+ + D ++ V+ ++ + D K L+ +D L+ K++S I+L Sbjct: 744 ELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 804 ASV-EGGKVSLIAGVTADASRKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 862 ALAGVKGWVE 871 >gi|304410155|ref|ZP_07391774.1| alanyl-tRNA synthetase [Shewanella baltica OS183] gi|307302134|ref|ZP_07581892.1| alanyl-tRNA synthetase [Shewanella baltica BA175] gi|304351564|gb|EFM15963.1| alanyl-tRNA synthetase [Shewanella baltica OS183] gi|306914172|gb|EFN44593.1| alanyl-tRNA synthetase [Shewanella baltica BA175] Length = 874 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/906 (43%), Positives = 560/906 (61%), Gaps = 56/906 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y TT Sbjct: 6 AELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRATTA 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + R Sbjct: 66 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPKER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEIF+ Sbjct: 126 LCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEIFY 185 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A + Sbjct: 186 DHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAAI 245 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FLIADG++P+NEG Sbjct: 246 MQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEKSL--RVIADHIRSCAFLIADGVMPSNEG 303 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG TE L+P+L MG A L + + ++E+ L++E+E Sbjct: 304 RGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAEEE 363 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +F +TL+RGL +LD L+ L K + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 364 QFARTLERGLGILDAALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VDEA 421 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 422 GFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFSGYTELAG----------- 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V AI Q GE V +G + VV D TPFYAE+GGQ+GD G + Sbjct: 465 ------------QAKVTAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQLVA 512 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 G+ + D QK + H ++ G L + +D + R + +NHS THLLH A Sbjct: 513 SGVEFTVNDTQKYGQATG-HQGVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLHAA 571 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN I +N + T M Sbjct: 572 LRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEMGI 631 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE+ I Sbjct: 632 DEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEAGI 686 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ A+ Sbjct: 687 AAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEMAQ 746 Query: 777 RKLQLNV---EDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L DL I VN + + V++ L+ + D L++K++S II+L G + Sbjct: 747 LKDKLAAAASADLVGDAIVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-GTA 805 Query: 832 KEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 +E K +++ V+ DL+ + A +L A ++A+V GG GGGRP MAQ+GG D A+A Sbjct: 806 QEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDAALA 863 Query: 891 GVASFL 896 V ++ Sbjct: 864 QVLPWI 869 >gi|258623515|ref|ZP_05718516.1| alanyl-tRNA synthetase [Vibrio mimicus VM573] gi|258584177|gb|EEW08925.1| alanyl-tRNA synthetase [Vibrio mimicus VM573] Length = 860 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/907 (43%), Positives = 548/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNEALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DETGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ I +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + D K I HH ++ +G+L + +D Q R +S+NHSATHLL Sbjct: 511 LKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN I +N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHSIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A ++ Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I+ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 IA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|296158159|ref|ZP_06840991.1| alanyl-tRNA synthetase [Burkholderia sp. Ch1-1] gi|295891495|gb|EFG71281.1| alanyl-tRNA synthetase [Burkholderia sp. Ch1-1] Length = 874 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/910 (42%), Positives = 547/910 (60%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L + Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSEI Sbjct: 122 DKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQALIKAAARETGVSDLTNNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG ++ L +MG+AYPEL A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGAAYPELKDAEQRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+G L+ L G + L+G++AFKL+DT+G PLD+ D+ C Sbjct: 360 EERFFETIEHGMSILEGALAELEAGSSKTLDGELAFKLHDTYGFPLDLTADV-CREREVT 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F++A+ QR +ARA K+ L+ T F GYD + + +D Sbjct: 419 VDEAAFDEAMTRQREQARA-------AGKFKMAQGLEYSGEKTTFHGYD-----EIVFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V++A GQ+ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVI-----------------ALYVEGASVQQASQGQQAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +R ++D K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 510 VLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV Q GS + D RFD H+ P+T +++ +E+ VN + N P + R Sbjct: 570 MHKALREVLGTHVQQKGSLVDADKTRFDFAHNAPLTDEQIRRVEEIVNAEVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV Sbjct: 630 VMSFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVM 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A + D ++ + A+ LK + R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRIVQVQDQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K K+ + D ++ V+ ++ + D K L+ +D L+ K++S I+L Sbjct: 744 ELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 804 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 862 ALAGVKGWVE 871 >gi|262372182|ref|ZP_06065461.1| alanyl-tRNA synthetase [Acinetobacter junii SH205] gi|262312207|gb|EEY93292.1| alanyl-tRNA synthetase [Acinetobacter junii SH205] Length = 884 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/918 (44%), Positives = 541/918 (58%), Gaps = 68/918 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 11 AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRAVSS 70 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AWD LT E L + Sbjct: 71 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWDFLTNEQWLALPK 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K GL A +IIRI N DNFW+M +TGPCGPCSEI Sbjct: 131 DRLYVTVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPCSEI 190 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GGLPGS EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 191 FYDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERIS 250 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 251 AVLQHVNSNYEIDLFQHLLKAAANIIGIQDEGQPSL--RVLADHARSCCFLIADGVNPSN 308 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL E Sbjct: 309 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLVEVMGEAYPELASRKDVIEATLLRE 368 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+ L+ L KD ++ G FKLYDT+G P D+ DI RG ID Sbjct: 369 EEQFAKTLEQGLKLLEAELAQL-KDTVIPGATVFKLYDTYGFPTDLTADIARERGFT-ID 426 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + S+ + G TQF GY Sbjct: 427 ETGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGY-------------- 466 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 D T G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 467 --------DATQGQGQIV-AIYKDGTQVDEINEGDEALIVLNQTPFYAESGGQIGDTGIF 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D ++ D KK+ G FVH IV G L+ ++ T+ R + NHSATHLLH Sbjct: 518 KNDTGIFEVQDT-KKSGGAFVHQGIVTMGSLKATQNVEATVKADIRAATARNHSATHLLH 576 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILG HV Q GS + D LRFD + +P+T +L+ IE VN + N PV T ++ Sbjct: 577 AALRQILGDHVQQKGSLVASDILRFDFANDQPVTFEQLQQIERLVNAEVIANTPVTTELL 636 Query: 655 NREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + E A A GA L G KY + VRV+S +E ++ S LCGG HV TG+I L I Sbjct: 637 DIESAKAKGAMMLFGEKYGEEVRVLSMGSIIEEKN---FSIELCGGIHVKRTGDIGLFKI 693 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE + AG+RRIEA+TG +A + D ++++ LK + V +VE I E L Sbjct: 694 TSEGGVAAGVRRIEAVTGTKALEAVQKADSDIQTINGLLKAQKDQTVEKVEAIVETASSL 753 Query: 771 QLIHAKRKLQLNVEDLSCHKIADV----------NFMSHIISEVDSKELKSVMDALQKKI 820 Q K+ QLN + L+ + AD+ + + +D+K L+++ D+++ K+ Sbjct: 754 Q----KQIEQLN-QKLASFQAADLLDQVKEIAGRQTLITTVKGLDAKSLRNLHDSVKSKL 808 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + +I+L G+ + K S++ V + A D+ + A+ L GG GGG+P +AQ G P Sbjct: 809 EDAVIILAGVEGD-KVSLIASVAKQYAANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAP 866 Query: 881 NGNKADQAIAGVASFLKK 898 K DQ A + ++L++ Sbjct: 867 LNEKFDQVFAALPAWLEQ 884 >gi|205830049|sp|Q39HB7|SYA_BURS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+G L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEGALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKAAQGLEYTGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K++ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KIV-----------------ALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID R + NHSATHL+ Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + R+ Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHVS +G+I IV E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRSGDIGFFKIVVE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744 Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D + I V ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LGALKSKLASSQGDELAQQAVEIGGVFVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AV-ESGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|28869047|ref|NP_791666.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000] gi|37999391|sp|Q885J0|SYA_PSESM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28852287|gb|AAO55361.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000] Length = 874 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/911 (43%), Positives = 547/911 (60%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH +PSSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS G +N + +V+ DH+RS FLIADG+LP++ Sbjct: 244 AVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE LR E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLRGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +++ L+ L K ++ G++ FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ + G+ V +G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNAGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + R ++D K G F+HH +V G L + + + + R +NHSATHLL Sbjct: 510 LLAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|148828002|ref|YP_001292755.1| alanyl-tRNA synthetase [Haemophilus influenzae PittGG] gi|205830061|sp|A5UHW6|SYA_HAEIG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148719244|gb|ABR00372.1| alanyl-tRNA synthetase [Haemophilus influenzae PittGG] Length = 874 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/914 (42%), Positives = 554/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK + +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I +KK ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASIL-DKKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|113969471|ref|YP_733264.1| alanyl-tRNA synthetase [Shewanella sp. MR-4] gi|123130634|sp|Q0HL60|SYA_SHESM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|113884155|gb|ABI38207.1| alanyl-tRNA synthetase [Shewanella sp. MR-4] Length = 874 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/908 (42%), Positives = 558/908 (61%), Gaps = 60/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y TT Sbjct: 6 AALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRATTA 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + R Sbjct: 66 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPKER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +TVY D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EIF+ Sbjct: 126 LCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFY 185 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A + Sbjct: 186 DHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAAI 245 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q +NY+ID+F+ LI + ++ G+ N + RVI DH+RS +FL+ADG++P+NEG Sbjct: 246 MQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSNEG 303 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG TE L+P L MG A L ++++E+ L++E+E Sbjct: 304 RGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAEEE 363 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +F +TL+RGL +LD L+ L D L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 364 QFARTLERGLGILDSALNELQGD-TLDGETVFKLYDTYGFPVDLTADVCRERNII-VDEA 421 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 422 GFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYSELTG----------- 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 ++ V A+ GE V +G VV D TPFYAE+GGQ+GD G + Sbjct: 465 ------------NAKVTALYLNGESVPAINAGDDAVVVLDVTPFYAESGGQVGDKGVLVA 512 Query: 537 DGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 GI ++D QK +A G H + G L L +D + R + +NHS THLLH Sbjct: 513 QGIEFAVSDTQKFGQASG---HKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ + Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKAQLDKMKQLEKDM 744 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVG 829 K KL VN ++ +I ++D E L+ + D L++K++S +I+L G Sbjct: 745 QQLKDKLAAAASADLACDAVVVNGVNVLIKKLDGVEAGALRGLQDELKQKLKSAVILL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +++E K +++ V+ DL+ + A +L A ++A+V GG GGGRP MAQ+GG D A Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDAA 861 Query: 889 IAGVASFL 896 ++ V ++ Sbjct: 862 LSQVLPWI 869 >gi|78066024|ref|YP_368793.1| alanyl-tRNA synthetase [Burkholderia sp. 383] gi|77966769|gb|ABB08149.1| alanyl-tRNA synthetase [Burkholderia sp. 383] Length = 897 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 26 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 85 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 86 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIKFAWELLTTVYQLPKD 145 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 146 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 205 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 206 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 265 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 266 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 323 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR E+ Sbjct: 324 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGVAYPELKEAEQRVTDVLRQEE 383 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+G L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 384 ERFFETIEHGMSILEGALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 442 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 443 DEPAFDDAMARQREQARA-------AGKFKAAQGLEYTGAKTTFHGYE-----EIAFDDA 490 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K++ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 491 KIV-----------------ALYVDGSSVNEVKTGQDAVVVLDHTPFYAESGGQVGDQGV 533 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID R + NHSATHL+ Sbjct: 534 LANAATRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAHRRARTQRNHSATHLM 593 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + R+ Sbjct: 594 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 653 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHVS +G+I IV E Sbjct: 654 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRSGDIGFFKIVVE 707 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L + Sbjct: 708 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 767 Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D + I V ++ + D+K L+ +D L+ K++S I+L Sbjct: 768 LGALKSKLASSQGDELAQQAVEIGGVFVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 827 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 828 AV-ESGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 885 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 886 LAGVKGWVEE 895 >gi|115351339|ref|YP_773178.1| alanyl-tRNA synthetase [Burkholderia ambifaria AMMD] gi|122323447|sp|Q0BG79|SYA_BURCM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|115281327|gb|ABI86844.1| alanyl-tRNA synthetase [Burkholderia ambifaria AMMD] Length = 874 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/910 (42%), Positives = 543/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYSGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID R + NHSATHL+ Sbjct: 511 LANAATRFAVADTLKVQADVVGHHGTLEQGTLKIGDVLRAEIDAHRRARTQRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + R+ Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I IV E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVVE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744 Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D +I V ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LGALKSKLASSQGDELAQQATEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|205830256|sp|A4XWE2|SYA_PSEMY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/911 (45%), Positives = 557/911 (61%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+++W K G+ A+++IRI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYEIWNKEIGVPAERMIRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L+ AS + G EG + +V+ DH+RS SFLIADG+ P+N Sbjct: 244 AVLQHVNSNYEIDLFQNLLAASAKAIGCANEGQ--ASLKVVADHIRSCSFLIADGVTPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L++E Sbjct: 302 EGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVLKTE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L + ++ GD+ FKLYDT+G P+D+ DI R L+ +D Sbjct: 362 EEQFAKTLEQGLKILEQDLAGL-QGSVIPGDIVFKLYDTYGFPVDLTADIARERELS-VD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A + G+ K+ T+F+GY Sbjct: 420 EEGFEREMEAQRERARSASAFGMDYNALVKV-------DADTRFLGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + T+G I+ A+ + G V+ G++ VV DQTPFYAE+GGQ+GD G Sbjct: 460 ---------EGTSGSGKII-ALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDCGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D KA G F+HH +V +G L S+ + R+ ++NHSATHLL Sbjct: 510 LESAGMRFDVRDT-TKAGGAFLHHGVVAKGGLSVGTSVKAEAEASVRQATALNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +LK +ED VN I +N V T Sbjct: 569 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKQLEDIVNAEIRKNSEVETEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I SE Sbjct: 629 TDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AG+RRIEA+TG A + L +E+LK AS +K S+ NV+ ++ + E R+L + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLEKE 744 Query: 772 LIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K K DL S + ++ + +D K L +++D L+ K+ SG+I+L Sbjct: 745 LEQLKAKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVILLG 804 Query: 829 GISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G+ EK VL+ VT+DL + A DL R A GG GGGRP MAQ GG + K D+ Sbjct: 805 GVFDEK--VVLVAGVTQDLTAKLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGVDAGKLDE 861 Query: 888 AIAGVASFLKK 898 A+A A+F+++ Sbjct: 862 ALALAATFVEQ 872 >gi|238791374|ref|ZP_04635013.1| Alanyl-tRNA synthetase [Yersinia intermedia ATCC 29909] gi|238729507|gb|EEQ21022.1| Alanyl-tRNA synthetase [Yersinia intermedia ATCC 29909] Length = 875 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/912 (44%), Positives = 565/912 (61%), Gaps = 62/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAYEIWANEVGVPRERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS+EE G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI+A Q TG + + RVI DH+RS +FLI+DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIKAVAQATGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL Q + ++E L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNILGAKETFFYKLVAPLIAVMGSAADELKQQQAMVEHVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ I A+QF GYD + Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGADYNNMIRVD-----SASQFSGYDHVH-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + GE V+E +G++ VV +QTPFY E+GGQ+GD G Sbjct: 466 ---------------QQATVTALFRNGEAVDEINAGEEAVVVLNQTPFYGESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D QK + I H + +G LR S+ +D R ++ +NHSATHL Sbjct: 511 ELKNATATFAVADTQKYGQAI-GHLGQLTQGTLRVNHSIDAQVDVARRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +NLPV T Sbjct: 570 LHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNEQIRRNLPVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A GA AL G KY+D+VRV+++ G S+ LCGG H S TG+I L I+S Sbjct: 630 VMELDTAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES AGIRRIEA+TG+ A + L Q + L +A +K N+ +V + + R Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQTDLLADVAHLVKGDSHNLADKVRAVLDRSKMLER 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825 +LQ + ++ Q + S K+ +N + ++S++D+ E L++++D L+ ++ S II Sbjct: 745 ELQQLKDQQAAQESASLSSNAKL--INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L + + K S+++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG + Sbjct: 803 VLA-TTADDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQA 859 Query: 885 ADQAIAGVASFL 896 A+AGV +++ Sbjct: 860 LPSALAGVEAWV 871 >gi|251793474|ref|YP_003008203.1| alanyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700] gi|247534870|gb|ACS98116.1| alanyl-tRNA synthetase [Aggregatibacter aphrophilus NJ8700] Length = 874 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/914 (43%), Positives = 558/914 (61%), Gaps = 60/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FKN+F G EK Y Sbjct: 1 MKTTAQIRQSYLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKNVFLGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHYGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ DEEA+K+W G+ A++IIRI N DNFW M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDEEAYKIWHDEIGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NYDID+FK LI ++TG K N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYDIDIFKTLIAKVAELTGEKDLNNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG TE L+P L M A ++ + + +E+ Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGHLLGATEAFFYKLVPTLIEVMAQAGEDVKKHQATVEKF 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+++ KD +L+G VAFKLYDT+G PLD+ D+ RG+ Sbjct: 359 LRLEEEQFARTLERGLTLLDEALANV-KDNVLSGKVAFKLYDTYGFPLDLTADVCRERGI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A ID F + + QR RA++ S G+ ++ G T+F GY Sbjct: 418 A-IDEAGFEREMASQRVRAQSASQFGMDYNNVIRV-------DGTTRFEGY--------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + L + V A+ G+ VE +GQ+ V+ + TPFYAE+GGQ+G Sbjct: 461 -TESESLAK-------------VTALFHDGKAVESITAGQRAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G G+G + D QK + +F H + +G L S+ +D R+Q+S+NHSA Sbjct: 507 DIGRLEGNGFIFDVKDTQKYGQ-VFGHIGELTQGSLSVGQSVNAVVDDVRRQQISLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS ++ LRFD H + I+ +L +E VN + N PV Sbjct: 566 THLLHAALRQVLGEHVAQKGSLVSDALLRFDFAHHEAISKEQLAEVERIVNQQVRANNPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T M + A A GA AL G KY+++VRV+++ G S LCGG H TG+I L Sbjct: 626 QTEAMALDAAKAKGAMALFGEKYSEQVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IV+E+++ AGIRRIEAITG+ A L Q L A LK ++ ++ + ++++K Sbjct: 681 IVTETAVAAGIRRIEAITGETAIEWLQHQQTLLNQSADLLKSDVNSITDKISLLQDKFKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + K LQ DL S KI V+ + + +++K L+S++D+L+ ++ S Sbjct: 741 VEKELQTLKEKAALQAG-NDLAQSAVKIHGVSVIVQQLDGIEAKSLRSMVDSLKNQLGSV 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I++ + E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 800 IVVFASVLDE-KVNLIVGVTGDLTAKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGTQPQ 857 Query: 884 KADQAIAGVASFLK 897 +A++ + +LK Sbjct: 858 NIGKALSVCSDWLK 871 >gi|296104368|ref|YP_003614514.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058827|gb|ADF63565.1| alanyl-tRNA synthetase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 875 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/909 (44%), Positives = 569/909 (62%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQYAWELLTGENWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF LI+A +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYEIDLFSTLIKAVAEVTGATDLNNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVGPLIGVMGSAGDELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L K + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+EEQR RAR S G G+ I A++F GY+ L Sbjct: 420 VDEAGFEAAMEEQRRRARESS-GFGADYNAMIRVD-----SASEFKGYEALE-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ V A+ G+ V+ +GQ V+ D+TPFYAE+GGQ+GD G Sbjct: 466 ---------------LTGKVTALFVDGKAVDSISAGQDAVVILDKTPFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+G + D QK + I H + G L+ + +D R ++ +NHSATHL Sbjct: 511 ELQGNGFSFSVNDTQKYGQAIG-HLGKLVSGSLKVGEGVQANVDEARRARIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV+Q GS + LRFD +H + + +E++++ED VN I +NLP+ T Sbjct: 570 MHAALREVLGTHVAQKGSLVNDKVLRFDFSHFEAMKPSEIRAVEDLVNAQIRRNLPIETH 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ + A GA AL G KY+DRVRV+S+ G S+ LCGGTH S TG+I L IVS Sbjct: 630 IMDLDAAKKKGAMALFGEKYDDRVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A + L Q ++L +A LK N+ +V + R+L+ Sbjct: 685 ESGTAAGVRRIEAVTGEGAIASLHAQSDQLHDIAQLLKGDTQNLGEKVRVALDRTRQLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ + K D+ + ++S+ V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQAAAQESANLSSKAVDIKGVKLLVSDLAGVEPKMLRTMVDDLKNQLGSTVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K S++ V++D+ DR A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGKGGGRPDMAQAGGTDAAALPA 862 Query: 888 AIAGVASFL 896 A+A V S++ Sbjct: 863 ALASVESWV 871 >gi|172060378|ref|YP_001808030.1| alanyl-tRNA synthetase [Burkholderia ambifaria MC40-6] gi|205829999|sp|B1YNJ6|SYA_BURA4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|171992895|gb|ACB63814.1| alanyl-tRNA synthetase [Burkholderia ambifaria MC40-6] Length = 874 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 183 YDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID R + NHSATHL+ Sbjct: 511 LANAATRFAVADTLKVQADVVGHHGTLEQGTLKLGDVLRAEIDAHRRARTQRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + R+ Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I IV E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVVE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744 Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D ++ V ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LGALKSKLASSQGDELAQQATEVGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + A Sbjct: 805 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLPGA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|302132483|ref|ZP_07258473.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 874 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/911 (43%), Positives = 546/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH +PSSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS G +N + +V+ DH+RS FLIADG+LP++ Sbjct: 244 AVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE LR E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLRGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +++ L+ L K ++ G++ FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ + G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + R ++D K G F+HH +V G L + + + + R +NHSATHLL Sbjct: 510 LLAGDTRFDVSDTTKTG-GAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|331017460|gb|EGH97516.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 874 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/911 (43%), Positives = 546/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH +PSSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS G +N + +V+ DH+RS FLIADG+LP++ Sbjct: 244 AVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE LR E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLRGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +++ L+ L K ++ G++ FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ + G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + R ++D K G F+HH +V G L + + + + R +NHSATHLL Sbjct: 510 LLAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|237748703|ref|ZP_04579183.1| alanyl-tRNA synthetase [Oxalobacter formigenes OXCC13] gi|229380065|gb|EEO30156.1| alanyl-tRNA synthetase [Oxalobacter formigenes OXCC13] Length = 877 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/907 (43%), Positives = 551/907 (60%), Gaps = 56/907 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF+ GH ++ SSSL+P NDPTLM TN+GMV FK++F G +K Y T+V Sbjct: 11 AEIRQKFLSFFEAKGHTIVRSSSLVPANDPTLMLTNAGMVQFKDVFLGLDKRPYTRATSV 70 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L + Sbjct: 71 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPADK 130 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L+ TVY ED+EA+ +W GL ++I+RI N DNFW MA+TGPCGPCSEIF+ Sbjct: 131 LWATVYYEDDEAYDIWANEIGLPKERIVRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 190 Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G + GG PGS E+G+RYIEIWNLVFMQF + + LP +DTGMGLER+A V Sbjct: 191 DHGPDVAGGPPGSPDEDGDRYIEIWNLVFMQFNRDEQGNMTPLPSPCVDTGMGLERLAAV 250 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF++LI+A+ + TG NN + +VI DH+R++SF+I DG++P ++G Sbjct: 251 LQHVHSNYEIDLFQNLIKAAARETGTTDLTNNSL--KVIADHIRATSFMIVDGLIPGSDG 308 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 GYVLRRI+RRA+ + LG T+P L+ L EMG+AYPEL++A ++ LR E+E Sbjct: 309 HGYVLRRIIRRALRHGYKLGQTKPFFYKLVEDLVKEMGAAYPELVEAAGYVQRVLRHEEE 368 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RFG+TLD G+ +L+ L+ +LNG+ AF LYDT+G PLD+ DI R + +D Sbjct: 369 RFGETLDNGMKILESALTD--SSTVLNGETAFTLYDTYGFPLDLTADICRERNMT-VDEA 425 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ A+E+QR+ ARA SG K+ +L+ TQF+GY+ L Sbjct: 426 GFDVAMEKQRATARA------SGKF-KMAAALEYHGEKTQFVGYERLE------------ 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V ++V AI + G V++ +GQ +V D TPFYAE+GGQ+GD G +G Sbjct: 467 ----------EVGTVV-AIYRDGTPVDKIETGQNGVIVLDTTPFYAESGGQVGDVGTLVG 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G+R + D QK + HH + G + L ++ + R Q NHS THL+H A Sbjct: 516 NGVRFDVEDTQKIQADVAGHHGKLVNGTITIGDKLDGRVNMEMRAQTMRNHSVTHLMHKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LGSHV+Q GS + P+ RFD +H+ PIT E++ +E+ VN I N P T M+ Sbjct: 576 LRQVLGSHVAQRGSLVDPEKTRFDFSHNAPITDDEIRQVEEIVNREIVANNPTETHQMSF 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++AIA GA AL G KY D VRV+ + + S LCGGTHVS TG+I +VSE + Sbjct: 636 DEAIAHGATALFGEKYGDVVRVLDIGF------SCELCGGTHVSRTGDIGFFKVVSEGGV 689 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AGIRRIEA+TG A + K+ AS LK +V R+ ++ + + L +L Sbjct: 690 AAGIRRIEAVTGLVAMQWVQDMARKVGEAASALKTQPDELVNRIVQVQDHIKGLDRELST 749 Query: 775 AKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K K + D K D V ++ +I D L+S MD L+ K+++ I+L ++ Sbjct: 750 LKAKFASSQGDDLADKATDIKGVKVLAAMIEGADVSGLRSTMDKLKDKLKTAAIVLAAVN 809 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K S++ VT D+ + A +L AK + GG GGGRP MA +GG + + D A+ Sbjct: 810 -DGKVSLIAGVTSDMTSKLKASELVNHVAKQV-GGKGGGRPDMAAAGGTDPSGLDGALNS 867 Query: 892 VASFLKK 898 V ++++ Sbjct: 868 VGGWVQE 874 >gi|160876373|ref|YP_001555689.1| alanyl-tRNA synthetase [Shewanella baltica OS195] gi|205830203|sp|A9KYF8|SYA_SHEB9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160861895|gb|ABX50429.1| alanyl-tRNA synthetase [Shewanella baltica OS195] gi|315268563|gb|ADT95416.1| alanyl-tRNA synthetase [Shewanella baltica OS678] Length = 874 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/907 (43%), Positives = 560/907 (61%), Gaps = 58/907 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y TT Sbjct: 6 AELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRATTA 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + R Sbjct: 66 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPKER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEIF+ Sbjct: 126 LCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEIFY 185 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A + Sbjct: 186 DHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAAI 245 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FLIADG++P+NEG Sbjct: 246 MQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEKSL--RVIADHIRSCAFLIADGVMPSNEG 303 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG TE L+P+L MG A L + + ++E+ L++E+E Sbjct: 304 RGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAEEE 363 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +F +TL+RGL +LD L+ L K + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 364 QFARTLERGLGILDAALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VDEA 421 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 422 GFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFSGYTELAG----------- 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V AI Q GE V +G + VV D TPFYAE+GGQ+GD G + Sbjct: 465 ------------QAKVTAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQLVA 512 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G+ + D QK + H ++ G L + +D + R + +NHS THLLH A Sbjct: 513 NGVEFTVNDTQKYGQATG-HQGVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLHAA 571 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HVSQ GS + P+ LRFD +H + + + ELK +E+ VN I +N + T M Sbjct: 572 LRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKATELKEVEELVNTQIRRNHELKTAEMGI 631 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE+ I Sbjct: 632 DEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEAGI 686 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ A+ Sbjct: 687 AAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEMAQ 746 Query: 777 RKLQLNVEDLSCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L S + D VN + + V++ L+ + D L++K++S II+L G Sbjct: 747 LKDKLAAA-ASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL-GT 804 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++E K +++ V+ DL+ + A +L A ++A+V GG GGGRP MAQ+GG D A+ Sbjct: 805 AQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFL 896 A V ++ Sbjct: 863 AQVLPWI 869 >gi|327480000|gb|AEA83310.1| alanyl-tRNA synthetase [Pseudomonas stutzeri DSM 4166] Length = 874 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/910 (45%), Positives = 555/910 (60%), Gaps = 57/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ A+ G EG + +V+ DH+RS FLIADG+ P+N Sbjct: 244 AVLQHVNSNYEIDLFQSLLNAAADAIGCANEGQ--ASLKVVADHIRSCGFLIADGVTPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVLKNE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLAGLAG-SVIPGEVVFKLYDTYGFPVDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + G T+FIGY GS Sbjct: 420 EEGFEREMQAQRERARSASAFGMD-------YNSLVKVEGETRFIGYQGTSGSG------ 466 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KVL A+ +QG +V+ +G++ VV DQTPFYAE+GGQ+GD G Sbjct: 467 KVL-----------------ALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDCGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D KA G F+HH IV+ G L T + T+D R+ ++NHSATHLL Sbjct: 510 LEAQGLRFDVRDT-SKAGGAFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ILG HVSQ GS + LRFD +H + I +L+++ED VN I +N V Sbjct: 569 HAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEIEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A A GA AL G KY D VRV+++ GG S LCGGTHV+ TG+I L I SE Sbjct: 629 TDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AG+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R+L + Sbjct: 685 GGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLEKE 744 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLV 828 L K K + +VN + + + +D K L +++D L+ K+ S +I+L Sbjct: 745 LEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVILLG 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G+ ++ K ++ VT+DL R A DL R A GG GGGRP MAQ GG + K D+A Sbjct: 805 GV-QDDKVVLVAGVTQDLTSRLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGTDAAKLDEA 862 Query: 889 IAGVASFLKK 898 +A F ++ Sbjct: 863 LALALPFAQQ 872 >gi|68249409|ref|YP_248521.1| alanyl-tRNA synthetase [Haemophilus influenzae 86-028NP] gi|81336165|sp|Q4QM86|SYA_HAEI8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|68057608|gb|AAX87861.1| alanyl-tRNA synthetase [Haemophilus influenzae 86-028NP] Length = 874 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/914 (43%), Positives = 553/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEVGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|260581631|ref|ZP_05849428.1| alanyl-tRNA synthetase [Haemophilus influenzae NT127] gi|260095224|gb|EEW79115.1| alanyl-tRNA synthetase [Haemophilus influenzae NT127] Length = 874 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/914 (42%), Positives = 555/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P + M A ++ ++ +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTIIDVMAEAGKDVKAKQVNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + KD++L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLNLLDEALAQV-KDDVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+T Q A L Q L A LK +V +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTAQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|116878605|ref|YP_357817.2| alanyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380] gi|123756582|sp|Q3A1W0|SYA_PELCD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114843241|gb|ABA89647.2| alanyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380] Length = 882 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/904 (43%), Positives = 552/904 (61%), Gaps = 52/904 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR+ FL+FFQ +GH ++PSS+LIP NDPTL+F N+GM FK++F G+EK Y T+ Sbjct: 4 NEIRSRFLKFFQDHGHTVVPSSALIPHNDPTLLFINAGMNQFKDVFLGREKRDYVRATSA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI AW LT+E L + + Sbjct: 64 QKCVRAGGKHNDLENVGQTARHHTFFEMLGNFSFGDYFKKEAIDHAWKFLTEEMGLPKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ ED+EA+ +W+ G+ +++IR+ DNFWSM +TGPCGPCSEI DQGE + Sbjct: 124 LWVTVFREDDEAYDIWRDQQGIPEERLIRMGEKDNFWSMGDTGPCGPCSEILIDQGESMS 183 Query: 185 GGLPGSSEEG------ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G E G +RY+E+WNLVFMQF + LPK SIDTGMGLER+ V+Q Sbjct: 184 CG----DECGIGKCDCDRYLELWNLVFMQFNRDADGTMTPLPKPSIDTGMGLERITAVMQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANE 295 +NYD DL + +I E+++G +Y G+N ++ RVI DH R+++FLIADG+LP+NE Sbjct: 240 GVQSNYDCDLLRGIIAHVEELSGKRY-GDNAEHDMSMRVIADHSRATAFLIADGVLPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRIMRRA +A++LG+ +P++ + M AYPE Q + + ++ E+ Sbjct: 299 GRGYVLRRIMRRAARHAKMLGFADPVLYRTATFVLQSMAEAYPEPAQRADYVAKIVKIEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TLD GL +L + L +L GDVAFKLYDT G PLD+ DIL + I Sbjct: 359 ERFIQTLDNGLRILTEEVERLKAANATVLPGDVAFKLYDTFGFPLDLTADILRGENVT-I 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +EEQR +AR H G G I+ L E+ T F GY L G Sbjct: 418 DEDGFEACMEEQRQKAREHWKGSGEEAISGIYRQLAEEGARTDFTGYGELTG-------- 469 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S + AI+ G+ V A +G KVE+V TPFY E+GGQ GD G Sbjct: 470 ---------------QSEILAILLDGQPVSSAPAGAKVEIVTAATPFYGESGGQTGDCGT 514 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ITD +K +FVH + G L+T + LT+D + R+ ++NH+ATHLL Sbjct: 515 LAAGDAEVTITDTKKPLPELFVHVGEIAAGTLQTGETATLTVDRERRQATALNHTATHLL 574 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG HV Q GS +TP+ LRFD H +++ EL+ +E VN I +N V TR Sbjct: 575 QAALVEVLGEHVKQAGSLVTPERLRFDFIHFSAMSAEELERVETLVNCRIRENAGVDTRE 634 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A+A GA AL G KY D+VRVV V G S LCGGTH +++G+I L I+ E Sbjct: 635 MDHEQAVAEGATALFGEKYGDKVRVVRV-----GDISMELCGGTHANASGDIGLFKILQE 689 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + I AG+RRIEA+TG +A + Q+ L LAS +K + + R+ ++ E ++L+ Sbjct: 690 TGIAAGVRRIEAVTGAKALQVVRDQERTLDDLASLIKTDRPQLEARLRKLLERQKELERE 749 Query: 774 HAKRKLQLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + +LN + DL +I ++ + + +D K L+ + D ++ ++ SG+++L Sbjct: 750 IESLQGKLNADQAGDLLQQATEIDGISVVCGRVDNLDGKALRELADQVRDRLSSGVLIL- 808 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G + E KA +L+ VT+DL R A L + A ++ GGGGGGRP +AQ+GG + D+A Sbjct: 809 GSAHEGKAGLLVAVTKDLTKRLQAGALVKQLAAMV-GGGGGGRPDLAQAGGSKPEQLDEA 867 Query: 889 IAGV 892 +A V Sbjct: 868 LASV 871 >gi|171321470|ref|ZP_02910415.1| alanyl-tRNA synthetase [Burkholderia ambifaria MEX-5] gi|171093253|gb|EDT38456.1| alanyl-tRNA synthetase [Burkholderia ambifaria MEX-5] Length = 874 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/909 (42%), Positives = 542/909 (59%), Gaps = 55/909 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ L ID R + NHSATHL+ Sbjct: 511 LANAATRFAVADTLKVQADVVGHHGTLEQGTLKIGDVLRAEIDAHRRARTQRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + R+ Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I IV E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVVE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A + D ++ A+ LK + R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRFVQDLDARMNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744 Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D ++ V ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LGALKSKLASSQGDELAQQATEVGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + A Sbjct: 805 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTDPANLPGA 862 Query: 889 IAGVASFLK 897 +AGV +++ Sbjct: 863 LAGVKGWVE 871 >gi|153001637|ref|YP_001367318.1| alanyl-tRNA synthetase [Shewanella baltica OS185] gi|205830202|sp|A6WR16|SYA_SHEB8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151366255|gb|ABS09255.1| alanyl-tRNA synthetase [Shewanella baltica OS185] Length = 874 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/909 (43%), Positives = 561/909 (61%), Gaps = 58/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEKSL--RVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P+L MG A L + ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L K + L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDTALNEL-KGDTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 420 EAGFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFTGYTELAG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI GE V +G + VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------QAKVTAIYLNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +GI + D QK + H ++ G L + +D + R + +NHS THLLH Sbjct: 511 VANGIEFTVNDTQKYGQATG-HQGVLATGSLSVGQVIEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN I +N + T M Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE+ Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744 Query: 775 AKRKLQLNVEDLSCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A+ K +L S + D VN + + V++ L+ + D L++K++S II+L Sbjct: 745 AQLKDKLAAA-ASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL- 802 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G ++E K +++ V+ DL+ + A +L A ++A+V GG GGGRP MAQ+GG D Sbjct: 803 GTTQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDA 860 Query: 888 AIAGVASFL 896 A+A V ++ Sbjct: 861 ALAQVLPWI 869 >gi|330863734|emb|CBX73834.1| alanyl-tRNA synthetase [Yersinia enterocolitica W22703] Length = 875 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/912 (44%), Positives = 566/912 (62%), Gaps = 62/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAYEIWANDIGIPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI+A +VTG + + RVI DH+RS +FLI+DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ I A+QF GYD + Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGADYNNLIRVD-----SASQFSGYDHVH-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + GE V+E G++ VV +QTPFY E+GGQ+GDTG Sbjct: 466 ---------------QQATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D QK + I H + G LR S+ ID R ++ +NHSATHL Sbjct: 511 ELKNATATFAVADTQKYGQAI-GHLGQLAHGTLRVNHSIDAQIDAARRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 570 LHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A GA AL G KY+D+VRV+++ G S+ LCGG H S TG+I L I+S Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + R Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVAHLVKGDTHNLADKVRAVLDRSKMLER 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825 +LQ + ++ Q + S K+ VN + ++S++D+ E L++++D L+ ++ S II Sbjct: 745 ELQQLKDQQAAQESASLSSNAKL--VNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L I+ + K S+++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG N Sbjct: 803 VLATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTNVQA 859 Query: 885 ADQAIAGVASFL 896 A+A V +++ Sbjct: 860 LPSALASVEAWV 871 >gi|311694210|gb|ADP97083.1| alanyl-tRNA synthetase, class IIc [marine bacterium HP15] Length = 876 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/912 (43%), Positives = 565/912 (61%), Gaps = 58/912 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL++F++ GH ++PSSSL+P +DPTL+FTN+GM FK++F G+E+ Y T+ Sbjct: 3 TAELRQAFLDYFKQQGHTIVPSSSLVPADDPTLLFTNAGMNQFKDLFLGREERDYTRATS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L Sbjct: 63 SQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINYAWTFLTGENWLNLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 Q +L++TVY ED+EAF +W K G+ AD+I+RI N DNFW M +TGPCGPC+E Sbjct: 123 QEKLWVTVYAEDDEAFDIWNKEIGVPADRIVRIGDNKGGRYASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS EE G+RYIEIWN+VFMQ+ + E LPK S+DTGMGLER+ Sbjct: 183 IFYDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRTADGEMLKLPKPSVDTGMGLERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 VLQ +NY+IDLF+ L+ A+ Q+ G + RV+ DH+RS +FLIADG++P+ Sbjct: 243 TAVLQGVHSNYEIDLFQDLLAAASQILGGA--ATTEASLRVVADHIRSCAFLIADGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRG+VLRRI+RRA + LG T P L ALC MG A+P+L+ ++ IE+ L Sbjct: 301 NEGRGFVLRRIIRRAARHGNKLGATGPFFYKLTGALCELMGEAFPQLVSSRKQIEKVLLQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTLD+GL LL+ ++ L EI G+ F LYDT+G P+D+ DI RGL + Sbjct: 361 EEEQFAKTLDKGLRLLEQDIAELKGTEI-PGETIFTLYDTYGFPVDLTNDIARERGLT-L 418 Query: 414 DIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D + +A+E QR RARA S G+ L+ G T+F GY+ + G + Sbjct: 419 DYEGYEKAMEGQRERARAASKFGIDYNAA---GLQLE---GKTEFTGYEHIDGHE----- 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++A++ GE + A +G + VV ++TPFYAE+GGQ+GDTG Sbjct: 468 ------------------KIRAVIVNGE-EKTAEAGDEAVVVLERTPFYAESGGQVGDTG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G R ++TD +K+ + +H + G L + + ID+ R + NHSATHL Sbjct: 509 LLTWSGGRFKVTDTRKEGDN-HLHLGTLIEGELFPGLEVDARIDHARRERTKRNHSATHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HVSQ GS + PD LRFD +H + +T +L+ IE VN+ I +N PV T Sbjct: 568 LHAALRKVLGEHVSQKGSLVDPDKLRFDFSHFEAVTPEQLREIERQVNEQILENSPVQTE 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 I + E A GA AL G KY D VRV+S+ ++ +S LCGGTHVS TG+I L I S Sbjct: 628 ITDMEKAQEKGAMALFGEKYGDVVRVLSMGTDN---YSVELCGGTHVSRTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES I +G+RRIEA+TG A + G + L+ A +K S+ +V+ +V++ + R+L Sbjct: 685 ESGISSGVRRIEAVTGMGALDWIDGTERTLREAARLVKGSRESVIEKVQQTIDRNRQLEK 744 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM---DALQKKIQSGIIML 827 ++ K KL + DV + + SE++ + K++M D L+ K+ G+++L Sbjct: 745 EVDALKAKLASSAGTDLASTAVDVGGLKVVASELEGADRKALMETADQLKNKLGEGVVVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + ++ K +++ VT+ R A DL + L+A+V G GGGRP MAQ GG + +K + Sbjct: 805 ASV-EDGKVTLVAGVTKSATGRIKAGDLMKHLAAQV--DGKGGGRPDMAQGGGNDPSKLE 861 Query: 887 QAIAGVASFLKK 898 A+AGVA +++K Sbjct: 862 DALAGVAGWVEK 873 >gi|284007755|emb|CBA73582.1| alanyl-tRNA synthetase [Arsenophonus nasoniae] Length = 899 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/909 (43%), Positives = 547/909 (60%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GHE++PSSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 27 STAEIRQAFLDFFHTKGHEIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 86 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT E F+L Sbjct: 87 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTSEQWFNL 146 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY DE A+K+W++ G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 147 PKERLWVTVYHTDEAAYKIWQQEIGIPIERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 206 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +Q+ LP S+DTGMGLER Sbjct: 207 EIFYDHGEHILGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGSLKALPTPSVDTGMGLER 266 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI + + + N + RVI DH+RSS+FLI DG+ P Sbjct: 267 IAAVLQHVNSNYEIDLFRQLIASIAKAVALSDLNNKSL--RVIADHIRSSAFLIGDGVFP 324 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 ANEGRGYVLRRI+RRA+ + +LG E L+ L MG EL + IE+TL+ Sbjct: 325 ANEGRGYVLRRIIRRAVRHGYMLGAKETFFYKLVAPLIQVMGDTADELKSHQATIEKTLK 384 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL RGL LLD L+ L D L G++AF+LYDT+G P D+ D+ R + Sbjct: 385 NEEEQFARTLARGLQLLDDELAQLQGD-TLAGEIAFRLYDTYGFPFDLTADVCRERNIK- 442 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D FN A+E+QR RAR S G + + I + F GY+ Sbjct: 443 VDEAGFNAAMEQQRYRARESS-GFATDYNDVIKVD-----SHSDFSGYE----------- 485 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N + V AI G+ V G++ ++ D+T FYAE+GGQ+GD+G Sbjct: 486 ------------NNNQQATVIAIFHHGKSVNVLNQGEEGIIILDKTSFYAESGGQVGDSG 533 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++D QK A+ I H V G + S+ ID + R + +NHSATHL Sbjct: 534 ILSNSHGQFAVSDTQKYAQAI-GHLGKVITGSITVNNSVEAKIDIERRNAIRLNHSATHL 592 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HVSQ GS + LRFD +H +T +++ IED VN I +N P++T Sbjct: 593 LHAALRDVLGEHVSQKGSLVNEKYLRFDFSHFAAMTPKQIRQIEDIVNCQIRKNDPIITT 652 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ + A GA AL G KY+ +VRV+S+ G S LCGGTH + TG+I L I S Sbjct: 653 LMDLDAAKEKGAMALFGEKYDAKVRVLSI-----GDFSIELCGGTHANRTGDIGLFRIKS 707 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES AGIRRIEAITGQ A L Q + L + +K +++ +++ ++ R Sbjct: 708 ESGTAAGIRRIEAITGQAAIDDLHLQSQLLAEIGQLMKGDADSLMEKIKATLDKVKLLER 767 Query: 769 KLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L + ++ Q +V KI VN + ++ + K+L+ ++D L+ +++S II+L Sbjct: 768 SLNQLKGQQAAQESVSLSQKVKKINGVNLLVTQLNNTEPKQLRIIVDDLKNQLKSAIIVL 827 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 IS + K S+++ VT DL + A DL A+ + GG GGGRP MAQ+GG N Sbjct: 828 STISND-KVSLIVGVTNDLTAKIKAGDLISFVAQQV-GGKGGGRPDMAQAGGSNITALPA 885 Query: 888 AIAGVASFL 896 A+A V ++ Sbjct: 886 ALASVEEWV 894 >gi|262172368|ref|ZP_06040046.1| alanyl-tRNA synthetase [Vibrio mimicus MB-451] gi|261893444|gb|EEY39430.1| alanyl-tRNA synthetase [Vibrio mimicus MB-451] Length = 860 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/907 (43%), Positives = 546/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNEALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DETGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ I +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + D K I HH ++ +G+L + +D Q R +S+NHSATHLL Sbjct: 511 LKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN I +N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHSIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A ++ Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L + + +IA VN + ++ D+K L+ ++D ++ ++ SGIIML Sbjct: 738 LAAKESSGLIN------QVKQIAGVNVLVAELNGADNKALRGMVDDIKNQLGSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|205830255|sp|A4VJB3|SYA_PSEU5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/910 (45%), Positives = 554/910 (60%), Gaps = 57/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ A+ G EG + +V+ DH+RS FLIADG+ P+N Sbjct: 244 AVLQHVNSNYEIDLFQSLLNAAADAIGCANEGQ--ASLKVVADHIRSCGFLIADGVTPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVLKNE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLAGLAG-SVIPGEVVFKLYDTYGFPVDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + G T+FIGY GS Sbjct: 420 EEGFEREMQAQRERARSASAFGMD-------YNSLVKVEGETRFIGYQGTSGSG------ 466 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KVL A+ +QG +V+ +G++ VV DQTPFYAE+GGQ+GD G Sbjct: 467 KVL-----------------ALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDCGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D KA G F+HH IV+ G L T + T+D R+ ++NHSATHLL Sbjct: 510 LEAQGLRFDVRDT-SKAGGAFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ILG HVSQ GS + LRFD +H + I +L+++ED VN I +N V Sbjct: 569 HAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEIEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A A GA AL G KY D VRV+++ GG S LCGGTHV+ TG+I L I SE Sbjct: 629 TDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AG+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R+L + Sbjct: 685 GGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLEKE 744 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLV 828 L K K + +VN + + + +D K L +++D L+ K+ S +I+L Sbjct: 745 LEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVILLG 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G+ ++ K ++ VT+DL R A DL R A GG GGGRP MAQ GG + K D+A Sbjct: 805 GV-QDDKVVLVAGVTQDLTSRLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGTDAAKLDEA 862 Query: 889 IAGVASFLKK 898 +A F ++ Sbjct: 863 LALALPFAQQ 872 >gi|302037043|ref|YP_003797365.1| alanyl-tRNA synthetase [Candidatus Nitrospira defluvii] gi|300605107|emb|CBK41440.1| Alanyl-tRNA synthetase [Candidatus Nitrospira defluvii] Length = 876 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/903 (43%), Positives = 546/903 (60%), Gaps = 41/903 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ +R F+++F++ GH +PS+ LIP DPTL+FTN+GM FK +F G+E Y Sbjct: 4 SVNDLRRAFIQYFEQQGHRAVPSAPLIPQADPTLLFTNAGMNQFKRVFLGEETRAYNRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 TVQKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ W+ LT L + Sbjct: 64 TVQKCLRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKEEAIRFGWEFLTSVVGLSK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R++IT++ ED+EA +LW+KI G+S +I+R DNFW MA+TGPCGPCSE+ FDQG Sbjct: 124 DRMWITIFREDDEADRLWQKI-GVSPSRIVRCGEKDNFWQMADTGPCGPCSELHFDQGPS 182 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 +PG + E G+R IEIWNLVFMQF + + LPK SIDTGMGLER+ V Q + + Sbjct: 183 VPGDATPNGE-GDRVIEIWNLVFMQFNRDSAGTLNPLPKPSIDTGMGLERLTAVAQGRLS 241 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300 NYD DLF L+ A G +Y + RVI DHLR+ +FL+ADG+LP+NEGRGYV Sbjct: 242 NYDSDLFAPLLAAIGTRAGAQYGAVEQADRSMRVIADHLRAITFLMADGVLPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA + RLLG TEP + L + +MG AY EL A + E R E+ERF Sbjct: 302 LRRILRRAARHGRLLGITEPFLHELTATVVEQMGEAYHELRPAAGTVAEATRGEEERFIA 361 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLD+GL +L+ +L+ + +L+G FKLYDT+G P+D++ + C +D F Sbjct: 362 TLDQGLPILNDMLTKVRASGQNMLSGTEIFKLYDTYGFPMDLIAEA-CREQDIRLDETGF 420 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 A+EEQR+RAR + G S T + + G T F+GYD L Sbjct: 421 EAAIEEQRTRAR-KTGGFESETARPALSEVAARVGTTAFVGYDHLNSE------------ 467 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 +V+A+++ +V+EA G ++EVV D TPFYAE GGQ GD G G Sbjct: 468 -----------GVVQALLKGDRLVKEAREGDEIEVVLDVTPFYAEGGGQAGDQGLLTGPD 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 R++I + + + VH +V G +R L L+++ + R+ + NH+ATHL+H AL Sbjct: 517 GRVEIRETTRPVPTLIVHKGVVTSGSIREGERLQLSVNRRTRQDAARNHTATHLVHAALR 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS + P+ LRFD H + + S ++ IE VN+ + Q+ PV T +M ++ Sbjct: 577 DLLGPHVKQYGSLVAPNRLRFDFAHFRSLASRDIDEIESIVNEQVRQDQPVQTDVMGVQE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+A GA A G KY D+VRVV ++ S LCGGTH TGEI L IVSES + A Sbjct: 637 AVAGGALAFFGDKYGDQVRVVHID-----TFSKELCGGTHCRRTGEIGLFRIVSESGVAA 691 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIE +TG A L + ++ L+ LKV+ G VV R ++ E+ ++ + A+ K Sbjct: 692 GVRRIECLTGSGALDSLKRLEADVRELSDLLKVAPGEVVSRTRKLSEQLKEKERELAEVK 751 Query: 779 LQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L++ + D +I V + +D ++++ D L+ K++SG++ L G + + K Sbjct: 752 LKMASTSSGDSQAREIKGVQVHAQRTDGLDVNGMRALADQLRDKLRSGVVAL-GAANDGK 810 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 S+L+VVT+DL+ R A DL + A + GG GGGRP MAQ+GG N A+ V Sbjct: 811 VSLLVVVTKDLVGRLKAGDLIKEMATEV-GGTGGGRPEMAQAGGKNPEGLGTALEKVFGL 869 Query: 896 LKK 898 ++K Sbjct: 870 VQK 872 >gi|117919577|ref|YP_868769.1| alanyl-tRNA synthetase [Shewanella sp. ANA-3] gi|205830207|sp|A0KU94|SYA_SHESA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|117611909|gb|ABK47363.1| alanyl-tRNA synthetase [Shewanella sp. ANA-3] Length = 874 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/910 (42%), Positives = 558/910 (61%), Gaps = 60/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ N + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L D L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDSALNELQGD-TLDGETVFKLYDTYGFPVDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 420 EAGFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYSELTG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ V A+ GE V +G VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------NAKVTALYLNGESVSAISAGDDAVVVLDVTPFYAESGGQVGDKGVL 510 Query: 535 IGDGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + GI ++D QK +A G H + G L L +D + R + +NHS THL Sbjct: 511 VAQGIEFAVSDTQKFGQASG---HKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + Sbjct: 568 LHAALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVA 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I S Sbjct: 628 EMAIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITS 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 E I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 683 EGGIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKAQLDKMKQLEK 742 Query: 772 -LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827 + K KL VN ++ +I +++ E L+ + D L++K++S +I+L Sbjct: 743 DMQQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAVILL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G+++E K +++ V+ DL+ + A +L A ++A+V GG GGGRP MAQ+GG D Sbjct: 803 -GVAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLD 859 Query: 887 QAIAGVASFL 896 A++ V ++ Sbjct: 860 AALSQVLPWI 869 >gi|146281753|ref|YP_001171906.1| alanyl-tRNA synthetase [Pseudomonas stutzeri A1501] gi|145569958|gb|ABP79064.1| alanyl-tRNA synthetase [Pseudomonas stutzeri A1501] Length = 900 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/910 (45%), Positives = 552/910 (60%), Gaps = 57/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 30 AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 89 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K L + Sbjct: 90 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLKLPK 149 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 150 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 209 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 210 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 269 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ A+ G EG + +V+ DH+RS FLIADG+ P+N Sbjct: 270 AVLQHVNSNYEIDLFQSLLNAAADAIGCANEGQ--ASLKVVADHIRSCGFLIADGVTPSN 327 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L++E Sbjct: 328 EGRGYVLRRIIRRACRHGNKLGAKGSFFHRIVAALVAEMGDAFPELKQQQAHIERVLKNE 387 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 388 EEQFAKTLEQGLKILEQDLAGLA-GSVIPGEVVFKLYDTYGFPVDLTGDIARERNLT-LD 445 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + G T+FIGY GS Sbjct: 446 EEGFEREMQAQRERARSASAFGMD-------YNSLVKVEGETRFIGYQGTSGSG------ 492 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KVL A+ +QG +V+ +G++ VV DQTPFYAE+GGQ+GD G Sbjct: 493 KVL-----------------ALFKQGMLVDSLSAGEEGVVVLDQTPFYAESGGQIGDCGY 535 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D KA G F+HH IV+ G L T + T+D R+ ++NHSATHLL Sbjct: 536 LEAQGLRFDVRDT-SKAGGAFLHHGIVDSGTLTTGAQVEATVDASVRQATALNHSATHLL 594 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ILG HVSQ GS + LRFD +H + I +L+++ED VN I +N V Sbjct: 595 HAALREILGEHVSQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDRVNAEIRRNSAVEIEE 654 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A A GA AL G KY D VRV+++ GG S LCGGTHV+ TG+I L I SE Sbjct: 655 TDIDTAKAKGAMALFGEKYGDTVRVLTM----GGGFSVELCGGTHVNRTGDIGLFKITSE 710 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--- 770 + AG+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R+L Sbjct: 711 GGVAAGVRRIEAVTGAPALAYLNDAEEQLKQAASLVKGSRENLLDKLGGLLERNRQLEKE 770 Query: 771 --QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 QL N S ++ + ++ +D K L +++D L+ K+ S +I+L Sbjct: 771 LEQLKAKAASAAGNDLAASAVEVNGIRVLAARQDGLDGKALLALVDQLKNKLGSAVILLG 830 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G+ ++ K ++ VT+DL R A DL R A GG GGGRP MAQ GG + K D+A Sbjct: 831 GV-QDDKVVLVAGVTQDLTSRLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGTDAAKLDEA 888 Query: 889 IAGVASFLKK 898 +A F ++ Sbjct: 889 LALALPFAQQ 898 >gi|161525078|ref|YP_001580090.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] gi|189350179|ref|YP_001945807.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] gi|205830000|sp|A9AC16|SYA_BURM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160342507|gb|ABX15593.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] gi|189334201|dbj|BAG43271.1| alanyl-tRNA synthetase [Burkholderia multivorans ATCC 17616] Length = 874 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/908 (42%), Positives = 546/908 (60%), Gaps = 55/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y TT Sbjct: 4 AEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRATTA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLPKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF+ Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A V Sbjct: 184 DHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERLAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ +FLI DG++P NEG Sbjct: 244 LQHVHSNYEIDLFQNLIKAAARVTEVSDLNNNSL--KVIADHIRACAFLIVDGVIPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+E Sbjct: 302 RGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +T++ G+ +L+ L+ L ++L+G++AFKL+DT+G PLD+ D+ RG+ +D Sbjct: 362 RFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT-VD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F+ A+ QR +ARA K L+ T F GY+ + +D K Sbjct: 421 EPAFDDAMARQREQARA-------AGKFKAAQGLEYTGAKTTFHGYE-----EIAFDDAK 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 469 VV-----------------ALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQGVL 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 R + D K + HH +E+G L+ L ID Q R + NHSATHL+H Sbjct: 512 ANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + D RFD H+ P+T E++ +E VND I N P + R+M Sbjct: 572 KALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVRVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY D VRV+ + + S LCGGTHVS TG+I L IV E Sbjct: 632 PYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGLFKIVMEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L +L Sbjct: 686 GVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLEKEL 745 Query: 773 IHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 746 AALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG A+ Sbjct: 806 V-EGGKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAAL 863 Query: 890 AGVASFLK 897 AGV +++ Sbjct: 864 AGVKGWVE 871 >gi|262164028|ref|ZP_06031767.1| alanyl-tRNA synthetase [Vibrio mimicus VM223] gi|262027556|gb|EEY46222.1| alanyl-tRNA synthetase [Vibrio mimicus VM223] Length = 860 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/907 (43%), Positives = 547/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNEALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DETGFEQAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ I +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + D K I HH ++ +G+L + +D Q R +S+NHSATHLL Sbjct: 511 LKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+ E+K +E VN I +N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTATEIKEVERLVNQEIRRNHSIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A ++ Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|146307925|ref|YP_001188390.1| alanyl-tRNA synthetase [Pseudomonas mendocina ymp] gi|145576126|gb|ABP85658.1| alanyl-tRNA synthetase [Pseudomonas mendocina ymp] Length = 892 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/911 (45%), Positives = 557/911 (61%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 22 AEIREAFLSFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 81 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K +L + Sbjct: 82 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTSDKWLNLPK 141 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+++W K G+ A+++IRI N DNFW+M +TGPCGPC+EI Sbjct: 142 EKLWVTVYATDDEAYEIWNKEIGVPAERMIRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 201 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 202 FFDHGEHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 261 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L+ AS + G EG + +V+ DH+RS SFLIADG+ P+N Sbjct: 262 AVLQHVNSNYEIDLFQNLLAASAKAIGCANEGQ--ASLKVVADHIRSCSFLIADGVTPSN 319 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L++E Sbjct: 320 EGRGYVLRRIVRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKQQQAHIERVLKTE 379 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L + ++ GD+ FKLYDT+G P+D+ DI R L+ +D Sbjct: 380 EEQFAKTLEQGLKILEQDLAGL-QGSVIPGDIVFKLYDTYGFPVDLTADIARERELS-VD 437 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A + G+ K+ T+F+GY Sbjct: 438 EEGFEREMEAQRERARSASAFGMDYNALVKV-------DADTRFLGY------------- 477 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + T+G I+ A+ + G V+ G++ VV DQTPFYAE+GGQ+GD G Sbjct: 478 ---------EGTSGSGKII-ALFKAGAAVDSLAEGEEGVVVLDQTPFYAESGGQIGDCGY 527 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D KA G F+HH +V +G L S+ + R+ ++NHSATHLL Sbjct: 528 LESAGMRFDVRDT-TKAGGAFLHHGVVAKGGLSVGTSVKAEAEASVRQATALNHSATHLL 586 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +LK +ED VN I +N V T Sbjct: 587 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKQLEDIVNAEIRKNSEVETEE 646 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I SE Sbjct: 647 TDIETAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 702 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AG+RRIEA+TG A + L +E+LK AS +K S+ NV+ ++ + E R+L + Sbjct: 703 GGVAAGVRRIEAVTGAAALAWLNAAEEQLKEAASLVKGSRDNVLDKLSALIERNRQLEKE 762 Query: 772 LIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K K DL S + ++ + +D K L +++D L+ K+ SG+I+L Sbjct: 763 LEQLKAKAASAAGNDLAGSAVDLKGTKVLAARLDGLDGKALLALVDQLKNKLGSGVILLG 822 Query: 829 GISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G+ EK VL+ VT+DL + A DL R A GG GGGRP MAQ GG + K D+ Sbjct: 823 GVFDEK--VVLVAGVTQDLTAKLKAGDLMR-QAAAAVGGKGGGRPDMAQGGGVDAGKLDE 879 Query: 888 AIAGVASFLKK 898 A+A A+F+++ Sbjct: 880 ALALAATFVEQ 890 >gi|221214968|ref|ZP_03587936.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD1] gi|221165195|gb|EED97673.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD1] Length = 874 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/908 (42%), Positives = 545/908 (60%), Gaps = 55/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y TT Sbjct: 4 AEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRATTA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLPKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF+ Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A V Sbjct: 184 DHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERLAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ +FLI DG++P NEG Sbjct: 244 LQHVHSNYEIDLFQNLIKAAARVTEVGDLNNNSL--KVIADHIRACAFLIVDGVIPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+E Sbjct: 302 RGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +T++ G+ +L+ L+ L ++L+G++AFKL+DT+G PLD+ D+ RG+ +D Sbjct: 362 RFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT-VD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F+ A+ QR +ARA K L+ T F GY+ + +D K Sbjct: 421 EPAFDDAMARQREQARA-------AGKFKAAQGLEYTGAKTTFHGYE-----EIAFDDAK 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 469 VV-----------------ALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQGVL 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 R + D K + HH +E+G L+ L ID Q R + NHSATHL+H Sbjct: 512 ANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + D RFD H+ P+T E++ +E VND I N P + R+M Sbjct: 572 KALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVRVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY D VRV+ + + S LCGGTHVS TG+I L IV E Sbjct: 632 PYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGLFKIVMEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L +L Sbjct: 686 GVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLEKEL 745 Query: 773 IHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 746 AALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG A+ Sbjct: 806 VEG-GKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAAL 863 Query: 890 AGVASFLK 897 AGV +++ Sbjct: 864 AGVKGWVE 871 >gi|221202097|ref|ZP_03575133.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2M] gi|221204772|ref|ZP_03577789.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2] gi|221175629|gb|EEE08059.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2] gi|221178180|gb|EEE10591.1| alanyl-tRNA synthetase [Burkholderia multivorans CGD2M] Length = 874 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/908 (42%), Positives = 545/908 (60%), Gaps = 55/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y TT Sbjct: 4 AEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYTRATTA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYMLPKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF+ Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A V Sbjct: 184 DHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERLAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ +FLI DG++P NEG Sbjct: 244 LQHVHSNYEIDLFQNLIEAAARVTEVGDLNNNSL--KVIADHIRACAFLIVDGVIPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG L+ L EMG+AYPEL +A+ + + LR E+E Sbjct: 302 RGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +T++ G+ +L+ L+ L ++L+G++AFKL+DT+G PLD+ D+ RG+ +D Sbjct: 362 RFFETIEHGMSILESALADLEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGVT-VD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F+ A+ QR +ARA K L+ T F GY+ + +D K Sbjct: 421 EPAFDDAMARQREQARA-------AGKFKAAQGLEYTGAKTTFHGYE-----EIAFDDAK 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 469 VV-----------------ALYVDGSAVTEVKAGQDAVVVLDHTPFYAESGGQVGDQGVL 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 R + D K + HH +E+G L+ L ID Q R + NHSATHL+H Sbjct: 512 ANASTRFAVADTLKVQADVIGHHGTLEQGTLKVGDVLRAEIDAQRRARTQRNHSATHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + D RFD H+ P+T E++ +E VND I N P + R+M Sbjct: 572 KALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVRVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY D VRV+ + + S LCGGTHVS TG+I L IV E Sbjct: 632 PYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVSRTGDIGLFKIVMEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L +L Sbjct: 686 GVAAGIRRVEAITGDNAVRYVQELDARVNEAAAALKAQPAELTQRIAQVQDQVKSLEKEL 745 Query: 773 IHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 746 AALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG A+ Sbjct: 806 VEG-GKVSLIAGVTAEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAAL 863 Query: 890 AGVASFLK 897 AGV +++ Sbjct: 864 AGVKGWVE 871 >gi|126175316|ref|YP_001051465.1| alanyl-tRNA synthetase [Shewanella baltica OS155] gi|205830201|sp|A3D783|SYA_SHEB5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|125998521|gb|ABN62596.1| alanyl-tRNA synthetase [Shewanella baltica OS155] Length = 874 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/909 (43%), Positives = 559/909 (61%), Gaps = 58/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWTFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPCSEI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAAYASDNFWQMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ + RVI DH+RS +FLIADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRTLIAKAAEIIGVSDLTEKSL--RVIADHIRSCAFLIADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P+L MG A L + + ++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPSLIAVMGDAAKGLAETQAIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L K L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDTALNEL-KGTTLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 420 EAGFEVAMAEQRSRAQA------AGNFGADYNAALKIDAETAFSGYTELAG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + AI Q GE V +G + VV D TPFYAE+GGQ+GD G Sbjct: 465 --------------QAKITAIYQNGESVTAIKAGDEAVVVLDVTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + G+ + D QK + H ++ G L + +D + R + +NHS THLLH Sbjct: 511 VASGVEFTVNDTQKYGQATG-HQGVLATGNLSVGQVVEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HVSQ GS + P+ LRFD +H + + +AELK +E+ VN I +N + T M Sbjct: 570 AALRQVLGTHVSQKGSLVDPERLRFDFSHFEGVKAAELKEVEELVNTQIRRNHELKTAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE+ Sbjct: 630 GIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEA 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDANSVVAKLKAQLDKMKQLEKEM 744 Query: 775 AKRKLQLNVEDLSCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A+ K +L S + D VN + + V++ L+ + D L++K++S II+L Sbjct: 745 AQLKDKLAAA-ASADLVGDAVVVNGVNVLIKKLDGVEASSLRGLQDELKQKLKSAIIVL- 802 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G ++E K +++ V+ DL+ + A +L A ++A+V GG GGGRP MAQ+GG D Sbjct: 803 GTAQEGKVNLIAGVSNDLIGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDA 860 Query: 888 AIAGVASFL 896 A+A V ++ Sbjct: 861 ALAQVLPWI 869 >gi|318604467|emb|CBY25965.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica Y11] Length = 875 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/912 (44%), Positives = 566/912 (62%), Gaps = 62/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAYEIWANDIGIPCERIIRIGDNKGSAFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI+A +VTG + + RVI DH+RS +FLI+DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ I A+QF GYD + Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGADYNNLIRVD-----SASQFSGYDHVHQ------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + GE V+E G++ VV +QTPFY E+GGQ+GDTG Sbjct: 467 ----------------QATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D QK + I H + G LR S+ ID R ++ +NHSATHL Sbjct: 511 ELKNATATFAVADTQKYGQAI-GHLGQLAHGTLRVNHSIDAQIDVARRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 570 LHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A GA AL G KY+D+VRV+++ G S+ LCGG H S TG+I L I+S Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + R Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVAHLVKGDTHNLADKVRAMLDRSKMLER 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825 +LQ + ++ Q + S K+ VN + ++S++D+ E L++++D L+ ++ S II Sbjct: 745 ELQQLKDQQAAQESASLSSNAKL--VNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L I+ + K S+++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG N Sbjct: 803 VLATIA-DDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTNVQA 859 Query: 885 ADQAIAGVASFL 896 A+A V +++ Sbjct: 860 LPSALASVEAWV 871 >gi|262401750|ref|ZP_06078316.1| alanyl-tRNA synthetase [Vibrio sp. RC586] gi|262352167|gb|EEZ01297.1| alanyl-tRNA synthetase [Vibrio sp. RC586] Length = 860 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/907 (43%), Positives = 548/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ + G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAAEAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGAELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEKAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + D K I HH ++ +G+L + +D Q R +S+NHSATHLL Sbjct: 511 LKTEAGIFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN I +N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHHIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSI-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A ++ Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAGLNGADNKALRGMVDDLKNQLGSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K ++ VT DL + A +L + A + GG GGGRP MAQ+GG + A+ Sbjct: 792 VA-DGKVGLIAGVTNDLTSKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAQALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|78485931|ref|YP_391856.1| alanyl-tRNA synthetase [Thiomicrospira crunogena XCL-2] gi|123555227|sp|Q31F91|SYA_THICR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78364217|gb|ABB42182.1| alanyl-tRNA synthetase [Thiomicrospira crunogena XCL-2] Length = 864 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/898 (43%), Positives = 558/898 (62%), Gaps = 47/898 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF K GH + SS ++P NDPTL+FTN+GMV FK F GQE Y+ T+V Sbjct: 4 AELRKAFLDFFVKQGHTAVHSSPVVPGNDPTLLFTNAGMVQFKETFLGQETREYKRATSV 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW LT+E L + + Sbjct: 64 QRCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWTFLTEELGLPEEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+ITV++ED EA +W K G+SA++ R DNFWSM +TGPCGPCSEIF+D G + Sbjct: 124 LWITVFEEDREAEDIWLKEMGVSAERFSRCGAKDNFWSMGDTGPCGPCSEIFYDHGADVA 183 Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS E+G+RYIEIWNLVFMQF++ LPK S+DTGMGLER+A V+Q + NN Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFDRSEDGTLTPLPKPSVDTGMGLERLAAVMQNQHNN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YDIDLF+ +++ + ++TG K N+ + RVI DH+RS +F++ DG+LP+NEGRGYVLRR Sbjct: 244 YDIDLFQAIVKKASELTGEKDLANSSL--RVIADHIRSCAFMVVDGVLPSNEGRGYVLRR 301 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG T+ L+P L +MG AYPEL++ + +E L+ E+ERF +TL+ Sbjct: 302 IIRRAIRHGYKLGQTDIFFYQLVPTLVEQMGEAYPELVKEQANVERALKLEEERFAETLE 361 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ +L+ ++ L +++G AFKLYDT+G PLD+ D+ R L+ +D F Q +E Sbjct: 362 NGMKILEEDIAQL-SGSVISGSTAFKLYDTYGFPLDLTADVARERNLS-VDEAGFEQEME 419 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR+RAR+ S G+ + K+ ++ G+T FIGY+ Sbjct: 420 AQRARARSAS-NFGAQSKNKVDYT-----GSTHFIGYE---------------------- 451 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + + AI VE+A GQ+ V+ +QTPFYAE+GGQ+GD G ++ +G+ Sbjct: 452 -QDEAEAEIAAIFVDNVSVEKASEGQEAIVILNQTPFYAESGGQVGDQG-SLTEGMNSFH 509 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D +K F+H V G + +++ ID + RR NHSATHLLH AL T+LG+ Sbjct: 510 VDNCQKQGAAFLHIGKVTAGSISVGQTILAHIDVKARRASERNHSATHLLHAALRTVLGT 569 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS + P+ LRFD +H +PI++ +L IE VN I N V+ M+ E A A G Sbjct: 570 HVGQKGSLVQPERLRFDFSHFEPISAEQLLEIEQLVNHNIMLNAQVMMEEMDIEAAKAKG 629 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRVV D G S LCGGTHV+ TGEI I SES I +G+RRI Sbjct: 630 AMALFGEKYGDVVRVV-----DMGDFSIELCGGTHVNWTGEIGPFRITSESGIASGVRRI 684 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQL 781 EA+TG+ A + ++ L ++A+ LK + V +V ++ E ++L QL + KL Sbjct: 685 EAVTGEAAWQTIYDMEKSLLNIAANLKTDKPQVESKVAQLVTEQKELEKQLKQLQSKLAS 744 Query: 782 NVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + D + +VN ++ + +E+ D L+ +D L+ K++ I+L + + K S+ Sbjct: 745 SQGDDLASSVTEVNGVNVLAAELEGADVNTLRETLDKLRDKLEPAAIVLAAVDGD-KVSL 803 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + V++ + A +L A+ + GG GGGRP MAQ+GG + +K +A+A V ++ Sbjct: 804 VAGVSKSITGNVKAGELVNHVAQQV-GGKGGGRPDMAQAGGKDPSKLKEALASVKEWV 860 >gi|290476264|ref|YP_003469168.1| alanyl-tRNA synthetase [Xenorhabdus bovienii SS-2004] gi|289175601|emb|CBJ82404.1| alanyl-tRNA synthetase [Xenorhabdus bovienii SS-2004] Length = 887 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/910 (43%), Positives = 564/910 (61%), Gaps = 58/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 16 STAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRPYSRAT 75 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT + F+L Sbjct: 76 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWELLTGKEWFNL 135 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPC+ Sbjct: 136 PKEKLWVTVYETDDEAYDIWHKEVGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 195 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF + LPK S+DTGMGLER Sbjct: 196 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHVDGTMEPLPKPSVDTGMGLER 255 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NYDIDLF LI + +VTG N + RVI DH+RS +FL+ DG++P Sbjct: 256 LTAVLQHVNSNYDIDLFCDLIASVAEVTGATDLTNKSL--RVIADHIRSCAFLVCDGVVP 313 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + L+E+ L+ Sbjct: 314 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVAPLIKIMGSAGDELKRQQSLVEQVLK 373 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 374 TEEEQFARTLERGLQLLDEELEKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 431 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D + F+ A+E QR RAR S G G+ E+I G + F GY+ Sbjct: 432 VDEVGFDVAMENQRRRARESS-GFGTDYNEQIKVD-----GRSDFSGYE----------- 474 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N + V AI + GE +++ +G++ V+ D+T FYAE+GGQ+GDTG Sbjct: 475 ------------HNSQQATVMAIFRHGEAIDQIHAGEEAIVILDKTAFYAESGGQVGDTG 522 Query: 533 -CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 + G+GI ++TD QK + I H + G L ++ I+ R + +NHSATH Sbjct: 523 NLSNGNGI-FEVTDTQKYGQAI-GHIGKLINGTLNVNNTINAEINRVRRDSIRLNHSATH 580 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG HVSQ GS + LRFD +H + + +++ +E+ VN+ I +NL +VT Sbjct: 581 LLHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKLEQIRQVENLVNEEIRKNLSIVT 640 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M E+A GA AL G KY+++VRV+S+ G S+ LCGGTH S TG+I L I Sbjct: 641 ELMELEEAKTKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIS 695 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES AGIRRIEAITGQ A + + Q + L+ +A +K ++ +V+ + ++L+ Sbjct: 696 SESGTAAGIRRIEAITGQTALNSVYQQTDLLQDIAHLVKSDISSLNEKVKTTLDRTKQLE 755 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K Q ++ S +I V + + + + K L++++D L+ ++ S II+ Sbjct: 756 KELQHLKSQQAAQESSSLANQTKEIQGVRLLVTQLGDTEPKMLRTMVDELKNQLGSAIIV 815 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K ++++ +T+DL R A DL A+ + GG GGGRP +AQ+GG + Sbjct: 816 LSTVTGD-KVTLIVGITKDLTARIKAGDLISFVAQQV-GGKGGGRPDLAQAGGTDVAALP 873 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 874 SALASVEEWV 883 >gi|170701933|ref|ZP_02892858.1| alanyl-tRNA synthetase [Burkholderia ambifaria IOP40-10] gi|170133166|gb|EDT01569.1| alanyl-tRNA synthetase [Burkholderia ambifaria IOP40-10] Length = 874 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/910 (42%), Positives = 542/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G + Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDPRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L + Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTTVYQLPKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ ++IIRI N DNFW+M +TGPCGPC+EIF Sbjct: 123 KLWVTVYQEDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWTMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKQSVDTGMGLERLAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARVTEISDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGGAYPELKEAEQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ + ++L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALADVEAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYVDGSAVNEVKAGQDAVVVLDHTPFYAESGGQVGDQGL 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ + ID R + NHSATHL+ Sbjct: 511 LANASTRFAVADTLKVQADVVGHHGTLEQGTLKIGDVMRAEIDAHRRARTQRNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + RFD H+ P+T E++ +E VN+ I N P + R+ Sbjct: 571 HKALREVLGAHVQQKGSLVDAEKTRFDFAHNAPMTDDEIRRVEQIVNNEILANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I IV E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVVE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ A+ LK + R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQDLDARMNEAAAALKAQPSELTQRIAQVQDQVKSLEKE 744 Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D +I V ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LGALKSKLASSQGDELAQQATEIGGVYVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AV-EGGKVSLIAGVTPDASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPGA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|170695494|ref|ZP_02886639.1| alanyl-tRNA synthetase [Burkholderia graminis C4D1M] gi|170139685|gb|EDT07868.1| alanyl-tRNA synthetase [Burkholderia graminis C4D1M] Length = 890 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/908 (42%), Positives = 541/908 (59%), Gaps = 55/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y TT Sbjct: 20 AEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRATTA 79 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L + + Sbjct: 80 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPKDK 139 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSEIF+ Sbjct: 140 LWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 199 Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G + GG PGS E+G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A V Sbjct: 200 DHGPDVWGGPPGSPDEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIAAV 259 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF+ LI A+ + TG+ NN + +VI DH+R+ SFLI DG++P NEG Sbjct: 260 LQHVHSNYEIDLFQALINAAARETGVSDLTNNSL--KVIADHIRACSFLIVDGVIPGNEG 317 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG ++ L +MG AYPEL A+ + + LR E+E Sbjct: 318 RGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGGAYPELKDAEQRVTDVLRQEEE 377 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +T++ G+ +LD L+ L K + L+G++AFKL+DT+G PLD+ D+ C +D Sbjct: 378 RFFETIEHGMSILDNALAELDKKGGKTLDGELAFKLHDTYGFPLDLTADV-CREREVTVD 436 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F++A+ QR +ARA K+ L+ T F GY+ + + +D K Sbjct: 437 EAAFDEAMARQREQARA-------AGKFKMAQGLEYSGAKTTFHGYE-----EIVFDDAK 484 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V+ A+ G V++ GQ+ VV D TPFYAE+GGQ+GD G Sbjct: 485 VV-----------------ALYVDGASVQQVTHGQQAVVVLDHTPFYAESGGQVGDQGLL 527 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +R + D K + HH +E+G L+ + ID R + + NHSATHL+H Sbjct: 528 ANASVRFAVADTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHLMH 587 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + PD RFD H+ P+T +++ +E VN + N P + R+M Sbjct: 588 KALREVLGSHVQQKGSLVDPDKTRFDFAHNAPMTDEQIRRVEQIVNAEVLANAPGIVRVM 647 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV E Sbjct: 648 PFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVMEG 701 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AGIRR+EAITG A + D ++ + A+ LK + R+ ++ ++ ++L +L Sbjct: 702 GVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKQLEKEL 761 Query: 773 IHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K+ + D ++A V ++ + D K L+ +D L+ K++S I+L Sbjct: 762 SALKSKMASSQGDELAGQAIEVAGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIVLAS 821 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A+ Sbjct: 822 V-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAAL 879 Query: 890 AGVASFLK 897 AGV +++ Sbjct: 880 AGVKGWVE 887 >gi|294649969|ref|ZP_06727359.1| alanine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194] gi|292824138|gb|EFF82951.1| alanine--tRNA ligase [Acinetobacter haemolyticus ATCC 19194] Length = 884 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/918 (44%), Positives = 545/918 (59%), Gaps = 68/918 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 11 AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRAVSS 70 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A++ AW+ LT E L + Sbjct: 71 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQNALKFAWEFLTSEQWLGLPK 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K G+ A++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 131 DRLYVTVYHTDDEAFDIWNKEIGVDAERIIRIGDNKGGQYASDNFWAMGDTGPCGPCSEI 190 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GGLPG+ EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 191 FYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERIS 250 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 251 AVLQHVNSNYEIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 308 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL E Sbjct: 309 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATLIRE 368 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L K ++ G+ FKLYDT+G P D+ DI R L ID Sbjct: 369 EEQFAKTLEQGLKLLEGELAQL-KGNVIAGETVFKLYDTYGFPTDLTADIARERDLT-ID 426 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + S+ + G TQF GY Sbjct: 427 EAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGY-------------- 466 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 D T+G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 467 --------DATHGQGQIV-AIYKDGIQVDEINEGDEALIVLNQTPFYAESGGQIGDTGIF 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D ++ D KK+ G FVH IV G L+ S+ T+ R + NHSATHLLH Sbjct: 518 KNDTGIFEVQDT-KKSGGAFVHQGIVTVGSLKATQSVEATVKADIRAATARNHSATHLLH 576 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILG HV Q GS + D LRFD + +P+T +L+ IE VN + N PV T ++ Sbjct: 577 AALRQILGDHVQQKGSLVASDILRFDFANDQPVTFDQLQQIERLVNAEVLANTPVTTELL 636 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLY 709 + E A A GA L G KY D VRV+S+ G V S LCGG HV TG+I L Sbjct: 637 DIETAKAKGAMMLFGEKYGDEVRVLSM----GSVIEEKNFSIELCGGIHVKRTGDIGLFK 692 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I SE + AG+RRIEA+TG +A + D ++++ S LK + V +VE + E Sbjct: 693 ITSEGGVAAGVRRIEAVTGTQALEVVQKVDHDIQTINSLLKAQKDQTVEKVEAVVETASS 752 Query: 770 LQLIHAKRKLQLNVEDLSCH------KIADVNFMSHIISEV---DSKELKSVMDALQKKI 820 LQ K+ QLN + S ++ D+ +I+ V D+K L+++ D+++ K+ Sbjct: 753 LQ----KQIEQLNQKLASFQAAELLDQVKDIAGRQTLITTVKGLDAKSLRNLHDSVKSKL 808 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + +I+L G+ + K S++ V + A D+ + A+ L GG GGG+P +AQ G P Sbjct: 809 EDAVIILAGVEGD-KVSLIASVAKQYTANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAP 866 Query: 881 NGNKADQAIAGVASFLKK 898 K DQ A + ++L++ Sbjct: 867 LNEKFDQVFAALPAWLEQ 884 >gi|145630561|ref|ZP_01786341.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021] gi|144983951|gb|EDJ91393.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021] Length = 874 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/914 (42%), Positives = 553/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGTTDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYA++GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAKSGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + S+NHSA Sbjct: 507 DSGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRLHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK +V +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLVEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQALKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|261210116|ref|ZP_05924414.1| alanyl-tRNA synthetase [Vibrio sp. RC341] gi|260840881|gb|EEX67423.1| alanyl-tRNA synthetase [Vibrio sp. RC341] Length = 860 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/907 (43%), Positives = 549/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTGVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ + G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAAEAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVMGTAGAELKKQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR +G + SL + T+F GY RG Sbjct: 420 DEAGFEKAMEEQRQRARE------AGQFGTDYNSLIKSATNTEFCGYTASRG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ + +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 466 ---------------QSVVREMFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + D K I HH I+ +G+L + +D Q R +S+NHSATHLL Sbjct: 511 LKTEAGIFHVEDTHKLGNAI-AHHGILAQGVLAKGDQVEAIVDEQRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN I +N + T I Sbjct: 570 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTAAEIKEVERLVNQEIRRNHHIETHI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I+SE Sbjct: 630 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A ++ Q D K+ +A+ K+ + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 738 LA---AKESAGLINQ---VKQIAGVNVLVAGLNGADNKALRGMVDDLKNQLGSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K ++ VT DL + A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-DGKVGLIAGVTNDLTSKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 849 Query: 890 AGVASFL 896 V +++ Sbjct: 850 ESVDAWI 856 >gi|322421559|ref|YP_004200782.1| alanyl-tRNA synthetase [Geobacter sp. M18] gi|320127946|gb|ADW15506.1| alanyl-tRNA synthetase [Geobacter sp. M18] Length = 875 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/896 (43%), Positives = 544/896 (60%), Gaps = 41/896 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F FFQK GH L+ SS+LIP NDPTL+FTN+GM FK+ F G EK Y + QK Sbjct: 6 IRAQFFNFFQKKGHTLVESSNLIPKNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L RLY Sbjct: 66 CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTVELGLSSDRLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TVY +D+EA +W + G+ ++I R DNFWSM +TGPCGPC+EIF+D G G Sbjct: 126 VTVYTDDDEAADIWHQQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGPGTGCG 185 Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P + + +RY+EIWN VFMQF + LPK S+DTGMGLER++ V+Q T+NY Sbjct: 186 SPACAVGCDCDRYMEIWNNVFMQFNRSKDGTLTPLPKPSVDTGMGLERISAVMQGVTSNY 245 Query: 245 DIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 D DL + +I+ EQV+G KY + + V+ RVI DH R+ +FLI DG+LP+NEGRGYVLR Sbjct: 246 DTDLLQGIIRHIEQVSGKKYRDDEKDDVSMRVIADHARAVTFLICDGVLPSNEGRGYVLR 305 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RIMRRA +A++LG EP++ ++ A+ MG AYPEL++ + +++ + +E+ERF +TL Sbjct: 306 RIMRRAARHAKMLGIAEPVLYRVVDAVNVMMGEAYPELLEREHYVKKVILAEEERFIETL 365 Query: 363 DRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 DRGL +L+ + + +++G+V FKLYDT G P+D+ DI+ A G +D F Sbjct: 366 DRGLAILNEETAAMKAKGASVISGEVIFKLYDTFGFPVDLTADIVEAEGFT-LDEDGFAL 424 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E+QR +AR + G G I+ L+ A++F+GY Sbjct: 425 CMEKQRVKARENWKGSGEQGLADIYKELRGTGIASEFVGY-------------------- 464 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S + AI++ G +VEE +G ++E+V +TPFY E+GGQ GDTG Sbjct: 465 ---AEQTAYSTISAIIKGGVLVEEGNAGDEIEIVTAKTPFYGESGGQAGDTGTISTGSAH 521 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++T + + VH V G +R ++ L + +R + NH+ATHLL AL + Sbjct: 522 VEVTASTRPFPDLIVHRGKVVSGNIRNGEAVDLKVATAHRAATARNHTATHLLQAALREV 581 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS +TPD LRFD TH P+T+ E++ +E VN I N PV R M +A+ Sbjct: 582 LGEHVKQAGSLVTPDRLRFDFTHFSPMTAEEMRRVEVLVNGHIMGNSPVDAREMPATEAL 641 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A GA AL G KY D VRVV V G SS LCGGTHV GEI I+SE+ I AG+ Sbjct: 642 AGGATALFGEKYGDIVRVVRV-----GDVSSELCGGTHVHGAGEIGFFKILSEAGIAAGV 696 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRK 778 RRIEA TG A + + +++ + +A+ LK G+ + RVE++ R+LQ L + K Sbjct: 697 RRIEAQTGNGALAVVHQMEDEQRGIATLLKAEGGSTLDRVEKLLASQRELQKELEALQAK 756 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 L N ++ + N + + +V D+K L+ + D L+ +I SGII+L G + KA Sbjct: 757 LNANKSADLIQQVREQNGIKILAVKVEGDAKGLRELSDTLKARIGSGIIVL-GAADAAKA 815 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 ++L+ VT DL R+ A D+ + A ++ GG GGG+P +AQ+GG +A+ V Sbjct: 816 NLLVAVTSDLASRWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPENLAEALEAV 870 >gi|58696697|ref|ZP_00372246.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila simulans] gi|58537122|gb|EAL60234.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Drosophila simulans] Length = 845 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/865 (44%), Positives = 537/865 (62%), Gaps = 54/865 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GMV FKNIFTG +K + + QKC+RAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMVQFKNIFTGAQKTEMKRAVSSQKCLRAGGKHNDLENVGYTTRHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156 SFG YFKE AI+ AW+ +TKE LD+ RL ITVY D+EA+++W+KISG S+DKIIRITT Sbjct: 61 SFGDYFKETAIEFAWEFITKELSLDKNRLSITVYHTDDEAYEIWRKISGFSSDKIIRITT 120 Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER 216 +DNFWSM TGPCGPCSEIF+D G + +EG+R +EIWNLVFM+F + + Sbjct: 121 DDNFWSMGNTGPCGPCSEIFYDHG-------SPNLQEGDRIVEIWNLVFMEFNKDEEGNL 173 Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIV 276 LPK IDTGMGLER+A V+Q +NYDIDLF LI S++ G N + H++I Sbjct: 174 HKLPKKCIDTGMGLERIAAVMQNVHDNYDIDLFSALISKSQEYCG---RTENKIAHKIIA 230 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE---- 332 DHLR+++FLIA+G+LP NEGR YVLRR++RRA Y LLGY + L+ + P L Sbjct: 231 DHLRAAAFLIAEGVLPGNEGRNYVLRRLIRRAARYIHLLGYNDSLLHRVFPVLIDSTSSA 290 Query: 333 -MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY 391 MG YPELI+AK LIE TL+SE+E F TL +G+ LL+ + L + L G+ AFKLY Sbjct: 291 YMGDIYPELIRAKSLIETTLKSEEENFKDTLMKGISLLEKFTADLKSGDTLPGESAFKLY 350 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 DT+G PLDI DIL + + D F+ A+ EQ+ RARA G G + E++WF L +K Sbjct: 351 DTYGFPLDITLDILKEKKI-NFDQKGFDDAMGEQKERARAKWAGSGEKSVEQVWFDLIDK 409 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 +G T+F+GY+ + D K+L + + E+++ A G+K+ Sbjct: 410 FGKTKFVGYEFNEVN-----DAKILA----------------IVSSKNEVIDSAKEGEKI 448 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 ++ D+TPFY E+GGQ+GDTG I + I + K +++H IV+ G + ++ Sbjct: 449 TIILDKTPFYGESGGQVGDTGSLIKSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNTV 508 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 +ID + R+ L NHSATHLLH L ILG HV+Q GS + PD LRFD +H+ +T + Sbjct: 509 AASIDKERRQTLRRNHSATHLLHFVLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQDQ 568 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691 L +ED VN +I +NL T+I + AI GA AL G KY ++VRVV + S Sbjct: 569 LFLVEDMVNSLIRENLSTSTKIQSMNQAIDEGAMALFGEKYGNQVRVVKIG------DSR 622 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751 LCGGTHV TGEI L IV+ESS+ G+RRIEA+TGQ A +++ + LK +A F+K Sbjct: 623 ELCGGTHVEHTGEIGLFKIVTESSVAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVKA 682 Query: 752 SQGNVVGRVEEIWEEYRKLQL-IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 ++ R+ + +E ++ + I K ++ E + +I +NF+SH + + + ++ Sbjct: 683 PVSEIINRLNILNQERKESEAKIKNLYKKLISAESIKSTEINGINFVSHAFTNIPANIIR 742 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIV-VTEDLLDRFNAVDLARLSAKVLGGGGGG 869 + LQ++ II K+K +VLI+ V++DL ++ +A +L ++ + G Sbjct: 743 EFV--LQQQKPKTIIAFTATEKDK--TVLIIKVSKDLANKISAKELVSIAVE----KNCG 794 Query: 870 GRPHMAQSGGPNGNKADQAIAGVAS 894 G +AQ+G + NK D AI + S Sbjct: 795 GNAELAQTGS-DSNKIDDAITAICS 818 >gi|114046704|ref|YP_737254.1| alanyl-tRNA synthetase [Shewanella sp. MR-7] gi|123030800|sp|Q0HXF8|SYA_SHESR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|113888146|gb|ABI42197.1| alanyl-tRNA synthetase [Shewanella sp. MR-7] Length = 874 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/908 (42%), Positives = 558/908 (61%), Gaps = 60/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y TT Sbjct: 6 AALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRATTA 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + R Sbjct: 66 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLKLPKER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +TVY D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EIF+ Sbjct: 126 LCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFY 185 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A + Sbjct: 186 DHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAAI 245 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q +NY+ID+F+ LI + ++ G+ N + RVI DH+RS +FL+ADG++P+NEG Sbjct: 246 MQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSNEG 303 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG TE L+P L MG A L ++++E+ L++E+E Sbjct: 304 RGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLADTQVIVEKALKAEEE 363 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +F +TL+RGL +LD L+ L D L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 364 QFARTLERGLGILDSALNELQGD-TLDGETVFKLYDTYGFPVDLTADVCRERNII-VDEA 421 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 422 GFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYSELTG----------- 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 ++ V A+ GE V +G VV D TPFYAE+GGQ+GD G + Sbjct: 465 ------------NAKVTALYLNGESVPAINAGDDAVVVLDVTPFYAESGGQVGDKGVLVA 512 Query: 537 DGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 GI ++D QK +A G H + G L L +D + R + +NHS THLLH Sbjct: 513 QGIEFAVSDTQKFGQASG---HKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ + Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKVQLDKMKQLEKDM 744 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVG 829 K KL VN ++ +I +++ E L+ + D L++K++S +I+L G Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAVILL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +++E K +++ V+ DL+ + A +L A ++A+V GG GGGRP MAQ+GG D A Sbjct: 804 VAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDAA 861 Query: 889 IAGVASFL 896 ++ V ++ Sbjct: 862 LSQVLPWI 869 >gi|261219548|ref|ZP_05933829.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1] gi|260924637|gb|EEX91205.1| alanyl-tRNA synthetase [Brucella ceti M13/05/1] Length = 723 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/732 (50%), Positives = 496/732 (67%), Gaps = 36/732 (4%) Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPK 221 M +TGPCGPCSEIF+D G+ I GG PGS EE G+R+IEIWNLVFMQFEQQ + R LP+ Sbjct: 1 MGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNLVFMQFEQQTPELRIDLPR 60 Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281 SIDTGMGLER+A VLQ +NYDIDLFK LI+ASE+ TG+K EG+ +HRVI DHLR+ Sbjct: 61 PSIDTGMGLERIAAVLQGVHDNYDIDLFKALIRASEEATGVKAEGDFRASHRVIADHLRA 120 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 SSFLIADG+LP+NEGRGYVLRRIMRRAM +A+LLG EPLM LLPAL EMG AYPELI Sbjct: 121 SSFLIADGVLPSNEGRGYVLRRIMRRAMRHAQLLGAKEPLMWRLLPALIREMGQAYPELI 180 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 +A+ LI ETL+ E+ RF KTL+RGL LL +L + + L+G+ AFKLYDT+G PLD+ Sbjct: 181 RAESLISETLKLEETRFRKTLERGLGLLSDASENLAEGDRLDGETAFKLYDTYGFPLDLT 240 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 QD L RG+A +D FN A+E Q++ ARA+ G G TE IWF +K+K GAT+F+GY+ Sbjct: 241 QDALRQRGIA-VDTEGFNVAMERQKAEARANWTGSGEAATETIWFGIKDKVGATEFLGYE 299 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T ++ ++V+ V G+ + VV +QTPFY Sbjct: 300 -----------------------TESAEGVIASLVRDSVEVPSVREGETISVVVNQTPFY 336 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E+GGQ GDTG G+G + + D QKK EG+FVH V G + + L +D R Sbjct: 337 GESGGQQGDTGTISGEGFVIAVKDTQKKGEGVFVHIGEVTEGTAKAGDVVELKVDSARRT 396 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NHSATHLLH AL LG+HV+Q GS + PD LRFD +H KPI++ EL+++E+ N+ Sbjct: 397 RIRSNHSATHLLHEALRETLGTHVAQKGSLVAPDRLRFDFSHPKPISAEELEAVENLANE 456 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY-----EDGGVHSSALCGG 696 II QN PV TR+M +DAIA GA AL G KY D VRVVS+ + G +S LCGG Sbjct: 457 IILQNAPVTTRLMAVDDAIAEGAMALFGEKYGDEVRVVSMGTAKHGSKAGKAYSVELCGG 516 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV TG+I L+ I+SE + AG+RR+EA+TG+ AR +L QDE++K++AS LK + +V Sbjct: 517 THVRQTGDIGLVRIISEGGVAAGVRRLEALTGEAARLYLEEQDERVKAIASALKTTSADV 576 Query: 757 VGRVEEIWEEYRKL--QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELK 810 + RV + +E +KL +L A++KL L + + + VNF+ I++ V ++LK Sbjct: 577 LDRVNALIDERKKLERELADARKKLALGGGSSDGGSAVEAVNGVNFLGKIVTGVSPRDLK 636 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D +K++ SG+++ +G+ ++ KAS + VTED++ RF+AVDL R ++ LGG GGGG Sbjct: 637 PLADEGKKQVGSGVVLFIGVGEDGKASAVAAVTEDMVGRFSAVDLVRAASAALGGAGGGG 696 Query: 871 RPHMAQSGGPNG 882 RP MAQ+GGP+G Sbjct: 697 RPDMAQAGGPDG 708 >gi|205830247|sp|A1S4E9|SYA_SHEAM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 873 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F++ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 4 TTAALRSAFLEYFRQQGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDCFLGMEKRSYVRAA 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWEFLTGTLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L +TVY D+EAF +W K G+ A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 EKLCVTVYHTDDEAFDIWNKQIGVPAENIIRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PGS EE G+R+IEIWN+VFMQ+ +Q+ LPK ++DTGMG+ER++ Sbjct: 184 FYDHGEHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQSDGTLDPLPKPAVDTGMGIERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ N + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQKLIAKAAEIIGVSDLENKSL--RVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T+ L+P L MG A EL + ++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLIEAMGDAAKELKATQTIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L K + L+G+ FKLYDT+G P+D+ D+ R L +D Sbjct: 362 EEQFARTLERGLGMLDAALADL-KGDTLDGETVFKLYDTYGFPVDLTADVCRERNLK-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A+ EQRSRA+A +G + + + AT F GY L Sbjct: 420 EEGFNAAMAEQRSRAQA------AGQFSADYNAALKIDTATDFCGYTEL----------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S V A+ + GE V+ A +G + VV D TPFYAE+GGQ+GD G Sbjct: 463 ------------AAESKVVALYRDGESVDAAEAGAVLVVVLDNTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +G+ + D QK +GI H + G ++ SL +D + R + +NHS THLLH Sbjct: 511 LAEGVEFNVADTQKFGQGIG-HKGQLALGSIKVGDSLKAMVDKKLRHRTELNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + ELK++ED VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKREELKAVEDLVNTQIRRNHELNFAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 DIEEAKAKGAMALFGEKYDSKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AGIRRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ R+L+ + Sbjct: 685 GIAAGIRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDVASVVAKLKAQLDKARQLEKEN 744 Query: 775 AKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +I V + + V++ L+ + D L++K++SG+++L Sbjct: 745 AQLKDKLAAAASADLAGDAQEINGVKVLVKRLEGVEAGALRGLQDELKQKLKSGVVLLA- 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I K +++ VT+DL + A +L A ++A+V GG GGGRP MAQ+GG K D A Sbjct: 804 IGSGDKVNLIAGVTQDLTGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSEPAKLDGA 861 Query: 889 IAGVASFLKK 898 +A V +L + Sbjct: 862 LASVVPWLNE 871 >gi|330879688|gb|EGH13837.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 874 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/911 (43%), Positives = 547/911 (60%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP++ Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASARAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL TEMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVTEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +++ L+ L K ++ G++ FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ + G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + R ++D K G F+HH +V G L + + + + R +NHSATHLL Sbjct: 510 LLAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|123441185|ref|YP_001005172.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|205830291|sp|A1JK09|SYA_YERE8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|122088146|emb|CAL10934.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 875 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/912 (43%), Positives = 567/912 (62%), Gaps = 62/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAYEIWANDIGIPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI+A +VTG + + RVI DH+RS +FLI+DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAADELKQQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ + +L A+QF GY+ + Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNNLIRVDSASQFSGYNHVHQ------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + GE V+E G++ VV +QTPFY E+GGQ+GDTG Sbjct: 467 ----------------QATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D QK + I H + G LR S+ +D R ++ +NHSATHL Sbjct: 511 ELKNATATFAVADTQKYGQAIG-HLGQLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 570 LHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A GA AL G KY+D+VRV+++ G S+ LCGG H S TG+I L I+S Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHASRTGDIGLFRILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + R Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDTNNLADKVRAVLDRSKMLER 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825 +LQ + ++ Q + S K+ VN + ++S++D+ E L++++D L+ ++ S II Sbjct: 745 ELQQLKDQQAAQESASLSSNAKL--VNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L + + K S+++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG N Sbjct: 803 VLA-TTADDKVSLIVGVTKDLTSKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTNVQA 859 Query: 885 ADQAIAGVASFL 896 A+A V +++ Sbjct: 860 LPSALASVEAWV 871 >gi|119774185|ref|YP_926925.1| alanyl-tRNA synthetase [Shewanella amazonensis SB2B] gi|119766685|gb|ABL99255.1| alanyl-tRNA synthetase [Shewanella amazonensis SB2B] Length = 900 Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/910 (43%), Positives = 561/910 (61%), Gaps = 56/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++R+ FLE+F++ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y Sbjct: 31 TTAALRSAFLEYFRQQGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDCFLGMEKRSYVRAA 90 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT L + Sbjct: 91 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWEFLTGTLKLPK 150 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L +TVY D+EAF +W K G+ A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 151 EKLCVTVYHTDDEAFDIWNKQIGVPAENIIRIGDNKGAPFASDNFWQMGDTGPCGPCTEI 210 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PGS EE G+R+IEIWN+VFMQ+ +Q+ LPK ++DTGMG+ER++ Sbjct: 211 FYDHGEHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQSDGTLDPLPKPAVDTGMGIERIS 270 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ N + RVI DH+RS +FL+ADG++P+N Sbjct: 271 AIMQGVHSNYEIDIFQKLIAKAAEIIGVSDLENKSL--RVIADHIRSCAFLVADGVMPSN 328 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T+ L+P L MG A EL + ++E+ L++E Sbjct: 329 EGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLIEAMGDAAKELKATQTIVEKALKAE 388 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD L+ L K + L+G+ FKLYDT+G P+D+ D+ R L +D Sbjct: 389 EEQFARTLERGLGMLDAALADL-KGDTLDGETVFKLYDTYGFPVDLTADVCRERNLK-VD 446 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A+ EQRSRA+A +G + + + AT F GY L Sbjct: 447 EEGFNAAMAEQRSRAQA------AGQFSADYNAALKIDTATDFCGYTEL----------- 489 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S V A+ + GE V+ A +G + VV D TPFYAE+GGQ+GD G Sbjct: 490 ------------AAESKVVALYRDGESVDAAEAGAVLVVVLDNTPFYAESGGQVGDKGQL 537 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +G+ + D QK +GI H + G ++ SL +D + R + +NHS THLLH Sbjct: 538 LAEGVEFNVADTQKFGQGIG-HKGQLALGSIKVGDSLKAMVDKKLRHRTELNHSVTHLLH 596 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + ELK++ED VN I +N + M Sbjct: 597 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEGVKREELKAVEDLVNTQIRRNHELNFAEM 656 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 657 DIEEAKAKGAMALFGEKYDSKVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 711 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AGIRRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ R+L+ + Sbjct: 712 GIAAGIRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDVASVVAKLKAQLDKARQLEKEN 771 Query: 775 AKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +I V + + V++ L+ + D L++K++SG+++L Sbjct: 772 AQLKDKLAAAASADLAGDAQEINGVKVLVKRLEGVEAGALRGLQDELKQKLKSGVVLLA- 830 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I K +++ VT+DL + A +L A ++A+V GG GGGRP MAQ+GG K D A Sbjct: 831 IGSGDKVNLIAGVTQDLTGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSEPAKLDGA 888 Query: 889 IAGVASFLKK 898 +A V +L + Sbjct: 889 LASVVPWLNE 898 >gi|116048827|ref|YP_792373.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14] gi|122257933|sp|Q02I63|SYA_PSEAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|115584048|gb|ABJ10063.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa UCBPP-PA14] Length = 874 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/912 (45%), Positives = 560/912 (61%), Gaps = 61/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L++AS + G ++ + +V+ DH+RS SFLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKTE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L + ++ G+V FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIARERELT-ID 419 Query: 415 IISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RARA S G+ + SL + G T+F+GY + Sbjct: 420 EDGFEREMEAQRERARASSAFGMD-------YNSLVKVDGETRFLGYQGV---------- 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +G IV A+ + G+ VE G++ VV DQTPFYAE+GGQ+GD+G Sbjct: 463 ------------SGAGQIV-ALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDSGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D KA G +HH +V RG L ++ +D R+ ++NHSATHLL Sbjct: 510 LEAAGVRFDVRDT-TKAGGAHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I + +LK++ED VN I +N V T Sbjct: 569 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVETEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I SE Sbjct: 629 TDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AG+RRIEA+TG A ++L G +E+LK AS +K S+ N++ ++ + E R L + Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLEKE 744 Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K K +DLS +I ++ + +D K L +++D L+ K+ +I+L Sbjct: 745 LEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVILLG 804 Query: 829 GISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G E V++V VT+DL + A +L + A GG GGGRP MAQ GG N K D Sbjct: 805 G---ELDGKVVLVAGVTQDLTGQLKAGELMK-QAAAAVGGKGGGRPDMAQGGGTNAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F+++ Sbjct: 861 EALALAQRFVEQ 872 >gi|240949596|ref|ZP_04753931.1| alanyl-tRNA synthetase [Actinobacillus minor NM305] gi|240295854|gb|EER46530.1| alanyl-tRNA synthetase [Actinobacillus minor NM305] Length = 874 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/896 (43%), Positives = 547/896 (61%), Gaps = 60/896 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FFQ GH ++ SSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFQSKGHTVVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ AD IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKIVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ GGLPG+ EE G+R+IE+WN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDKYWGGLPGTPEEDGDRFIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ID+F+ LI+ ++ +K N + RVI DH+RS S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYEIDIFQTLIKTVAELLNVKDLDNKSL--RVIADHIRSCSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + +LG E L+P L MG A + Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLAQVMGHAGEIVAQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + +++ L+GDVAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENKTLSGDVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A ID F ++ QR RA+A S G+ K+ G T FIGYD L Sbjct: 418 A-IDEAGFEAEMQAQRERAKASSNFGVDYNNVIKV-------DGKTNFIGYDNLTA---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + V + G V+ SG+ ++ DQTPFYAE GGQ+G Sbjct: 466 -------------------EATVVGLFSNGNAVDVIKSGENAIIILDQTPFYAEMGGQVG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G + + + D QK + +F H +E G L+ + + + R + +NHSA Sbjct: 507 DSGRISTEFCQFNVADTQKYGQ-VFGHIGQLEAGELKVGDKVTAEVAAERRHSIQLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LGSHV Q GS + GLRFD + + IT +L+ IE VN I +N+ V Sbjct: 566 THLLHSALRKVLGSHVMQKGSLVNEKGLRFDFSQPEAITKEQLEEIERIVNAKIRENIQV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 V M E+A A GA AL G KY D VRVV D V S LCGGTHV TG+I L Sbjct: 626 VIEEMGIEEAKAKGAMALFGEKYGDIVRVV-----DMSVFSIELCGGTHVKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 + SE ++ AG+RR+EAITG+ A + L + + A LK N+V +++++ ++ ++ Sbjct: 681 LTSEGAVAAGVRRVEAITGEAALAWLHNLQQMTQHSAELLKADSTNLVEKIQQLQDKAKR 740 Query: 770 ----LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + K+ Q DL+ +I VN + + + K L++++D L+ ++ S Sbjct: 741 LEKELQQLKEKQASQAGA-DLAKQAKQINGVNVVVTQLENAEPKVLRTMVDDLKNQLGSA 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 I++L G ++K ++++ V+ DL + A +L AK + GG GGGRP MA +GG Sbjct: 800 IVVL-GTVVDEKVNLIVGVSSDLTTQIKAGELVGEMAKCV-GGKGGGRPDMAMAGG 853 >gi|313105787|ref|ZP_07792050.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa 39016] gi|310878552|gb|EFQ37146.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa 39016] Length = 874 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/912 (45%), Positives = 560/912 (61%), Gaps = 61/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L++AS + G ++ + +V+ DH+RS SFLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKTE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L + ++ G+V FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIARERELT-ID 419 Query: 415 IISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RARA S G+ + SL + G T+F+GY + Sbjct: 420 EDGFEREMEAQRERARASSAFGMD-------YNSLVKVDGETRFLGYQGV---------- 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +G IV A+ + G+ VE G++ VV DQTPFYAE+GGQ+GD+G Sbjct: 463 ------------SGAGQIV-ALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDSGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D KA G +HH +V RG L ++ +D R+ ++NHSATHLL Sbjct: 510 LEAAGVRFDVRDT-TKAGGAHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I + +LK++ED VN I +N V T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVETEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I SE Sbjct: 629 TDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AG+RRIEA+TG A ++L G +E+LK AS +K S+ N++ ++ + E R L + Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLEKE 744 Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K K +DLS +I ++ + +D K L +++D L+ K+ +I+L Sbjct: 745 LEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVILLG 804 Query: 829 GISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G E V++V VT+DL + A +L + A GG GGGRP MAQ GG N K D Sbjct: 805 G---ELDGKVVLVAGVTQDLTGQLKAGELMK-QAAAAVGGKGGGRPDMAQGGGTNAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F+++ Sbjct: 861 EALALAQRFVEQ 872 >gi|329894416|ref|ZP_08270263.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC3088] gi|328923063|gb|EGG30387.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC3088] Length = 866 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/898 (44%), Positives = 543/898 (60%), Gaps = 50/898 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G E Y T+ Q+ Sbjct: 6 IREAFLSYFESQGHTRVASSSLVPENDPTLLFTNAGMNQFKDTFLGSEPRDYVRATSSQR 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+ L + RL+ Sbjct: 66 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWTFLTEVLGLPEDRLW 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TV+ D+EA +W K G+SA++ R+ DNFW M +TGPCGP SEIF+D G +PGG Sbjct: 126 VTVHVSDDEAADIWIKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGADVPGG 184 Query: 187 LPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 PGS +++ +RYIEIWNLVFMQF + E LPK S+DTGMGLER+A V+Q +NY+ Sbjct: 185 PPGSENDDLDRYIEIWNLVFMQFNRDASGELHPLPKPSVDTGMGLERIAAVMQNVHSNYE 244 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 IDLF+ LI+A+ Q NN++++ RVI DH+RS SFLI DG++P NEGRGYVLRR Sbjct: 245 IDLFQALIKAAAQAVNC----NNLLDNSLRVIADHIRSCSFLIVDGVVPGNEGRGYVLRR 300 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG TEP L+ AL +MG AYPEL Q + + L E+++F KTLD Sbjct: 301 IIRRAVRHGNKLGATEPFFYKLVDALSAQMGEAYPELAQQAGRVAQVLLQEEQQFAKTLD 360 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ +L+ L L EI GD+ FKLYDT+G P+D+ DI RGL +D+ +++A+ Sbjct: 361 NGMQILEESLEGLQGGEI-PGDIVFKLYDTYGFPVDLTNDIARERGLT-LDMAGYDEAMA 418 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 +QR+R++ G + GAT+F+GY D K Sbjct: 419 KQRARSQE------GGKFVVDYSKTIALEGATEFLGY----------SDAK--------- 453 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S V+ I+ GE V +GQ+ VVFD+TPFYAE+GGQ GDTG G+ ++ Sbjct: 454 ----ASGTVEVIIVDGEKVSTLAAGQQGVVVFDRTPFYAESGGQTGDTGGLTAPGLSARV 509 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D K+ + + +HH VE G L S+ + ID R Q+ NHSATHLLH AL +LG Sbjct: 510 LDTTKQGD-LHLHHVHVESGELAVAASVSMQIDEHLRDQIRANHSATHLLHAALRQVLGG 568 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS +T + LRFD +HS P+T+ EL + VN + N V TR+MN ++A+ +G Sbjct: 569 HVQQKGSLVTAERLRFDFSHSAPVTADELAQLNAIVNAQVMANTEVSTRLMNMDEAVQAG 628 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRV+++ + S LCGGTHV TG+I + IVSES I AG+RRI Sbjct: 629 AMALFGEKYGDEVRVLAMGTDS---FSVELCGGTHVGRTGDIGVFRIVSESGIAAGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKL-Q 780 EA+TG A + + D L+ + LK NVV RV + + R+L Q+ K K+ Q Sbjct: 686 EAVTGVGALAEINSLDTALQGVCLELKAQPENVVSRVAAMRGQIRELEKQIDQLKMKMAQ 745 Query: 781 LNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 +L+ I V ++ + D+K L+ +D ++ K+ +++L + +K + Sbjct: 746 AAGGELASQAIEVRGVPVLAARLDGADAKALRDAVDQMKSKLGDSVVLLASVVDDKIV-L 804 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 V++ + DR A DL R A L GG GGGRP MAQ GG + + + V +++ Sbjct: 805 AAGVSKAVTDRVKAGDLMREFATRL-GGKGGGRPDMAQGGGTDVAALNDVLGAVPAWV 861 >gi|260767196|ref|ZP_05876138.1| alanyl-tRNA synthetase [Vibrio furnissii CIP 102972] gi|260617804|gb|EEX42981.1| alanyl-tRNA synthetase [Vibrio furnissii CIP 102972] Length = 860 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/908 (42%), Positives = 548/908 (60%), Gaps = 69/908 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTEVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY D+EAF +W K G+ AD+I+RI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYQTDDEAFDIWNKQVGIPADRIVRIGDKPGGKAYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGSPEEDGDRFIEIWNNVFMQFNRHADGKMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ V G Y+ + + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGSAGEELKKQHAIVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L E L+G+ FKLYDT+G P D+ D+ RG I Sbjct: 362 EEENFGRTLDRGMAILNEALDALSGTE-LDGETVFKLYDTYGFPADLTNDVARERGFT-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F A+EEQR RAR +G + L + GAT+F GY Sbjct: 420 DEAGFEAAMEEQRQRARE------AGHFGTDYNQLIKVEGATEFCGY------------- 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G S+I + V +G+ +G K +V ++TPFYAE+GGQ GD G Sbjct: 461 ---------SATQGESTITEMFV-EGQAAASLSAGDKAIIVLNETPFYAESGGQCGDAGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ G+ ++ +D + R +S+NHSATHLL Sbjct: 511 LKTDAGVFHVVDTQKLGNAI-AHHGVMAEGVFAQGDTVHAIVDAKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + +GLRFD +H + +++AELK +E VN+ + N + T I Sbjct: 570 HAALRRVLGEHVTQKGSLVRAEGLRFDFSHLEAVSAAELKEVERLVNEQVRTNHRIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A A GA AL G KY+++VRV+S+ G S+ LCGG H SSTG+I L I SE Sbjct: 630 MDIDAAKAKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S I AGIRRIEA+TG+ A +L Q + +S +V ++ + + L + Sbjct: 685 SGIAAGIRRIEAVTGEAALDYLDAQHAQFES--------------KVADMASKAKGLEKE 730 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828 + H K KL K+ D+ + +++++ D+K L+ ++D L+ ++ SGIIML Sbjct: 731 IQHLKDKLAAKESASLTSKVKDIAGVKVLVAQLDGADNKALRGMVDELKNQLGSGIIMLG 790 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + A Sbjct: 791 NVA-DDKVGLIAGVTKDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDAAALPSA 848 Query: 889 IAGVASFL 896 + V +++ Sbjct: 849 LESVDAWI 856 >gi|87122506|ref|ZP_01078386.1| alanyl-tRNA synthetase [Marinomonas sp. MED121] gi|86162299|gb|EAQ63584.1| alanyl-tRNA synthetase [Marinomonas sp. MED121] Length = 871 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/908 (43%), Positives = 566/908 (62%), Gaps = 60/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +FL++F+ H+++ SSSLIP NDPTL+FTN+GMV FK++F G + Y T+ Sbjct: 4 SELRQSFLKYFESKQHQVVDSSSLIPGNDPTLLFTNAGMVQFKDVFLGMDDRPYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT+ L + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTQVLKLPTEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +TVY +D+EA+ +W K G+ D+I+RI N DNFW M +TGPCGPC+EIF+ Sbjct: 124 LLVTVYADDDEAWDIWAKKIGVPEDRIVRIGDNKGARYASDNFWQMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D GE I GG PGS EE G+R+IEIWN+VFMQF + LPK S+DTGMGLER+A + Sbjct: 184 DHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRDANGVMNPLPKPSVDTGMGLERIAAI 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 LQ +NY+ID+F++LI+A+ +V G E ++ RVI DH+RS SF+I DGI+P+NE Sbjct: 244 LQGVHSNYEIDIFQNLIKAAAKVVGTDDLEAQSL---RVIADHIRSCSFMIVDGIVPSNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG + L+ L TEMG AYP+L + I+ L E+ Sbjct: 301 GRGYVLRRIVRRAIRHGHKLGQKQAFFNTLVADLVTEMGDAYPDLAKLADRIQAILLKEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E+F KTL++G+ +LD + LG +I++G+ FKLYDT+G P D+ D+ R L ID Sbjct: 361 EQFAKTLEQGMRILDDAIGELGDSKIISGETVFKLYDTYGFPADLTNDVARERHLE-IDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A+EEQR+RAR S + + S + G T+F GY S + E Sbjct: 420 KGFERAMEEQRNRAR-------SASQFTMDMSGSIEAGDTEFTGY-----SHLVDE---- 463 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 C+ ++A++ GE VE +GQ V+ QTPFY E+GGQ+GD G Sbjct: 464 -CE-------------IEALILDGEKVESLTAGQSGIVILKQTPFYGESGGQVGDQGWLR 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+G +T+ K+ + +HH + G + L T+D R +NHSATHL+H Sbjct: 510 GNGA-FSVTNTTKQGK-THLHHGELREGSITLGDKLTATVDASLRAATGLNHSATHLMHE 567 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q GS + LRFD +H + +T+AE++ +ED VN+ I N V+T M+ Sbjct: 568 ALRRVVGDHVHQKGSLCDAERLRFDFSHFEGVTAAEIEQVEDMVNEQIRLNHEVLTEEMD 627 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A GA AL G KY+ +VRV+++ G +S LCGGTHV TG+I + IV+ES Sbjct: 628 IESAKERGAMALFGEKYDSQVRVLTM----GSEYSIELCGGTHVKRTGDIGVFKIVAESG 683 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---- 771 I AG+RRIEAITG+ A + ++ ++ +A+ +K ++ N++ +V + ++ R LQ Sbjct: 684 IAAGVRRIEAITGKVAIDYNRATEKSVQQVAALVKGNKENMIEKVTALSDQNRALQKELD 743 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828 +I AK Q DL+ + D++ ++++V D K L+ ++D L+ K++S +I+L Sbjct: 744 VIKAKLAAQAG-SDLASQAV-DIDGGKLLVAQVDVEDPKALRDMLDELKSKLESAVILLA 801 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K S++ VT++L + A DL ++ A ++ G GGGRP MAQ+GG N +A Sbjct: 802 SVN-DSKVSLIAGVTKELTKKVKAGDLIKMVAPLV-DGRGGGRPDMAQAGGNNPAGLPEA 859 Query: 889 IAGVASFL 896 +A V ++ Sbjct: 860 LASVQPWV 867 >gi|226952658|ref|ZP_03823122.1| alanyl-tRNA synthetase [Acinetobacter sp. ATCC 27244] gi|226836595|gb|EEH68978.1| alanyl-tRNA synthetase [Acinetobacter sp. ATCC 27244] Length = 884 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/915 (44%), Positives = 542/915 (59%), Gaps = 62/915 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 11 AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRAVSS 70 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ A++ AW+ LT E L + Sbjct: 71 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQNALKFAWEFLTSEQWLGLPK 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K G+ A++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 131 DRLYVTVYHTDDEAFDIWNKEIGVDAERIIRIGDNKGGQYASDNFWAMGDTGPCGPCSEI 190 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GGLPG+ EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 191 FYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERIS 250 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 251 AVLQHVNSNYEIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 308 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL E Sbjct: 309 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATLIRE 368 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L K ++ G+ FKLYDT+G P D+ DI R L ID Sbjct: 369 EEQFAKTLEQGLKLLEGELAQL-KGNVIAGETVFKLYDTYGFPTDLTADIARERDLT-ID 426 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + S+ + G TQF GY Sbjct: 427 EAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGY-------------- 466 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 D T+G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 467 --------DATHGQGQIV-AIYKDGIQVDEINEGDEALIVLNQTPFYAESGGQIGDTGIF 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D ++ D KK+ G FVH IV G L+ S+ T+ R + NHSATHLLH Sbjct: 518 KNDTGIFEVQDT-KKSGGAFVHQGIVTVGSLKATQSVEATVKADIRAATARNHSATHLLH 576 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILG HV Q GS + D LRFD + +P+T +L+ IE VN + N PV T ++ Sbjct: 577 AALRQILGDHVQQKGSLVASDILRFDFANDQPVTFDQLQQIERLVNAEVLANTPVTTELL 636 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVE--YEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + E A A GA L G KY D VRV+S+ ED S LCGG HV TG+I L I S Sbjct: 637 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIEDKNF-SIELCGGIHVKRTGDIGLFKITS 695 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E + AG+RRIEA+TG +A + D ++++ LK + V +VE + E LQ Sbjct: 696 EGGVAAGVRRIEAVTGTQALEVVQKADTDIQTINGLLKAQKDQTVEKVEAVVETASSLQ- 754 Query: 773 IHAKRKLQLNVEDLS---------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 K+ QLN + S +IA + + +D+K L+++ D+++ K++ Sbjct: 755 ---KQIEQLNQKLASFQAAELLDQVKEIAGRQTLITTVKGLDAKSLRNLHDSVKSKLEDA 811 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I+L G+ + K S++ V + A D+ + A+ L GG GGG+P +AQ G P Sbjct: 812 VIILAGVEGD-KVSLIASVAKQYTANLKAGDIIKHLAQEL-GGKGGGKPDLAQGGAPLNE 869 Query: 884 KADQAIAGVASFLKK 898 K DQ A + ++L++ Sbjct: 870 KFDQVFAALPAWLEQ 884 >gi|319897692|ref|YP_004135889.1| alanyl-tRNA synthetase [Haemophilus influenzae F3031] gi|317433198|emb|CBY81572.1| alanyl-tRNA synthetase [Haemophilus influenzae F3031] Length = 874 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/914 (42%), Positives = 552/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+F N+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFANAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK I + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTFIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA++ S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQSASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + R +S+NHSA Sbjct: 507 DSGYLSAQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNISLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIEILVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L LK +V +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSTDLLKSDVNTLVEKIQQLQDKTKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|319775253|ref|YP_004137741.1| alanyl-tRNA synthetase [Haemophilus influenzae F3047] gi|317449844|emb|CBY86053.1| alanyl-tRNA synthetase [Haemophilus influenzae F3047] Length = 874 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/914 (42%), Positives = 551/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGNHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA++ S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDRKMEAQRTRAQSASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G + + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK + +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|309973694|gb|ADO96895.1| Alanyl-tRNA synthetase [Haemophilus influenzae R2846] Length = 874 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/914 (42%), Positives = 554/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYDIWNKEVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSLEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + +V G K N ++ VI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEVVGTKDLSNKSLH--VIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKEAFFYKLVPTLIEVMAEAGKDVKAKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + K+ +L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALTQV-KNSVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDREMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G G+ + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSTQGVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKVLRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AG+RRIEA+TG+ A L Q L A LK + +++++ E+ +K Sbjct: 681 IITENAVAAGVRRIEAVTGENAIEWLHNQQRILTQSADLLKSDVNTLAEKIQQLQEKAKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDSIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I +KK ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASIL-DKKVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QA+ +L K Sbjct: 859 VAQAVKVAQDWLNK 872 >gi|330816605|ref|YP_004360310.1| Alanyl-tRNA synthetase [Burkholderia gladioli BSR3] gi|327368998|gb|AEA60354.1| Alanyl-tRNA synthetase [Burkholderia gladioli BSR3] Length = 874 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/908 (42%), Positives = 539/908 (59%), Gaps = 55/908 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTESRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI +W+LLT + L + Sbjct: 63 SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHYSWELLTSVYGLPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY +D+EA+ +W K G+ ++IIRI N DNFW M +TGPCGPCSEIF Sbjct: 123 KLWVTVYHDDDEAYDIWAKEVGVPTERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK SIDTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPSIDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARETGVADLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGAFFHKLVADLVAEMGGAYPELKEAEGRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +LD L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFLETIEHGMTILDAALAELDAKGAKQLDGELAFKLHDTYGFPLDLTADVCRERGMT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K+ ATQ + Y + + ED Sbjct: 420 DEPAFDDAMARQREQARAAG-----------------KFKATQGLEYSGAKTTFHGYEDI 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K + A+ G V++A +G++ VV D TPFYAE+GGQ+GD G Sbjct: 463 AFDDAK------------IVALYVGGTAVQQAQAGEQAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH VE+G L+ +L ID R + NHS THL+ Sbjct: 511 LANAATRFAVEDTLKVQADVIGHHGTVEQGTLKVGDTLRAEIDAARRARTERNHSVTHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV Q GS + D RFD H+ P++ E++ +E VN I N P + Sbjct: 571 HKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMSDDEIRRVEAIVNAEILANSPGIVSN 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I IV E Sbjct: 631 MSYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVRRTGDIGFFKIVME 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D +L + AS LK + R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNALRYVQELDARLNTAASMLKAQPAELTQRIGQVQDQVKSLEKE 744 Query: 772 LIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D + D V ++ + DSK L+ +D L+ K++ ++L Sbjct: 745 LAALKSKLASSQGDELAQQAVDVKGVQVLAATLDGADSKTLRETVDKLKDKLKHAAVVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AV-EGGKVSLIAGVTAEASKQVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAA 862 Query: 889 IAGVASFL 896 +AGV +++ Sbjct: 863 LAGVQAWV 870 >gi|213968623|ref|ZP_03396765.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1] gi|301385518|ref|ZP_07233936.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato Max13] gi|213926556|gb|EEB60109.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato T1] Length = 874 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/911 (43%), Positives = 545/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH +PSSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVPSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS G +N + +V+ DH+RS FLIADG+LP++ Sbjct: 244 AVLQHVHSNYEIDLFQSLLTASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE LR E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLRGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +++ L+ L K ++ G++ FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ + G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + R ++D K G +HH +V G L + + + + R +NHSATHLL Sbjct: 510 LLAGDTRFDVSDTTKTG-GASLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGGVDATALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|260579906|ref|ZP_05847736.1| alanyl-tRNA synthetase [Haemophilus influenzae RdAW] gi|260093190|gb|EEW77123.1| alanyl-tRNA synthetase [Haemophilus influenzae RdAW] Length = 874 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/914 (42%), Positives = 551/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDRKMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G + + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK + +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQLEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VTQAIKVAQDWLNK 872 >gi|50084439|ref|YP_045949.1| alanyl-tRNA synthetase [Acinetobacter sp. ADP1] gi|59798530|sp|Q6FCT2|SYA_ACIAD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49530415|emb|CAG68127.1| alanyl-tRNA synthetase [Acinetobacter sp. ADP1] Length = 878 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/910 (44%), Positives = 543/910 (59%), Gaps = 52/910 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A+ AWD LT E L + Sbjct: 64 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALTFAWDFLTSEQWLGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY+TVY D+EA+ +W K GL+AD+IIRI N DNFW+M +TGPCGPCSEI Sbjct: 124 DKLYVTVYHTDDEAYDIWNKEIGLAADRIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GGLPG+ EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HLI+++ ++ +K EG + RV+ DH RS FLIADG+ P+N Sbjct: 244 AVLQHVNSNYDIDLFQHLIKSACEIINVKDEGQPSL--RVVADHARSCCFLIADGVNPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + IE TL E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIDVMGDAYPELKNDQARIEATLIRE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L +++ G+ FKLYDT+G P D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLKLLEGELTQL-SGKVIPGETVFKLYDTYGFPTDLTADIARERDLE-ID 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F + +E QR RAR +G + S+ + G TQF GY Sbjct: 420 EVGFEREMEAQRRRAR------DAGKFAVDYNSIVKVEGETQFDGY-------------- 459 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 T G IV AI + GE V+E V G + +V +QTPFYAE+GGQ+GDTG Sbjct: 460 --------HATAGQGEIV-AIYKDGEQVDEVVEGDEALIVLNQTPFYAESGGQIGDTGLF 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D ++ D KK+ G FVH IV G L+ + + R + NHSATHLLH Sbjct: 511 KNDTGIFEVQDT-KKSGGAFVHQGIVTMGSLKAAQHVDAIVKADIRAATARNHSATHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILG+HV Q GS + D LRFD + +P++ +L+ IE VN + N V T ++ Sbjct: 570 AALRQILGTHVQQKGSLVASDILRFDFANDQPVSFEQLQEIERLVNAEVIANSAVTTELL 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I+SE Sbjct: 630 DIESAKAKGAMMLFGEKYGDEVRVLSMGSVIDEHNFSIELCGGIHVQRTGDIGLFKIISE 689 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE----YRK 769 + AGIRRIEA+TG +A + D ++ + S LK + V RV+ E+ +++ Sbjct: 690 GGVAAGIRRIEAVTGTKALEVVQKADADIQHINSLLKAQKDQTVERVQAAVEQTSALHKQ 749 Query: 770 LQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ ++ K E LS IA + + + +D+K L+++ D+++ K++ +I+L Sbjct: 750 IEQLNQKLANFQAAELLSQVQNIAGRSTLITTVQNIDAKSLRNLHDSVKSKLEDAVIVLA 809 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G+ + K S++ V + A D+ + A L GG GGG+P +AQ G P K + Sbjct: 810 GLEGD-KISLIASVAKQYTAHLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEKFEHV 867 Query: 889 IAGVASFLKK 898 IA + ++L++ Sbjct: 868 IAALPAWLEQ 877 >gi|304310760|ref|YP_003810358.1| Alanyl-tRNA synthetase [gamma proteobacterium HdN1] gi|301796493|emb|CBL44701.1| Alanyl-tRNA synthetase [gamma proteobacterium HdN1] Length = 876 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/908 (43%), Positives = 553/908 (60%), Gaps = 54/908 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FL++F NGH+++PSSSLIP NDPTL+FTN+GMV FK++F G++ Y+ TT Sbjct: 3 TSEIRKAFLDYFAVNGHQIVPSSSLIPGNDPTLLFTNAGMVQFKDVFLGRDARDYRRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT E L Sbjct: 63 SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPDAIRFAWEFLTGERWLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY D+EA+ +W + G+ D+++RI N DNFW M +TGPCGPC+E Sbjct: 123 KEKLWVTVYATDDEAYDIWTQQVGVPVDRVVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PGS E+G+RYIEIWN+VFMQF++ LPK S+DTGMGLER+ Sbjct: 183 IFYDHGEEIFGGPPGSKDEDGDRYIEIWNIVFMQFDRHPDGTLNPLPKPSVDTGMGLERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF HL+ A +VTG K + + RV+ DH+R+ +FLIADG++P+ Sbjct: 243 AAVLQHVHSNYEIDLFAHLLDAVAKVTGAKDLQDKSL--RVVADHIRACAFLIADGVVPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRIMRRA+ + LG EP L+ AL EMG AYPEL + + IE+T+ Sbjct: 301 NEGRGYVLRRIMRRAIRHGNKLGAQEPFFYKLVAALAAEMGDAYPELRKLQAQIEKTILQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F +TLD+GL +L+ L+ EI GD+ FKLYDT+G P D+ DI R L+ + Sbjct: 361 EEEQFARTLDQGLRILEQELTAHQLTEI-PGDLVFKLYDTYGFPADLTADIARERDLS-L 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F Q + Q+ R++ S G+ + + T F GY G Sbjct: 419 DMGGFEQRMAAQKERSQKSSQFAGN------YHDALDISTQTVFSGYSDTSG-------- 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V+A+ QG+ V +GQ VV DQTPFYAE+GGQ+GD G Sbjct: 465 ---------------QAKVEALFFQGKPVSSVSAGQDAIVVLDQTPFYAESGGQVGDVGL 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G ++ D K+ G +HH ++ G + + ++ + R+ + +NHSATHLL Sbjct: 510 IRKAGACFEVADTHKQG-GAHLHHGVLVSGQISVGDVVEAEVNAELRQAIRLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T LRFD ++ ++ AEL+ IE VND + N ++T I Sbjct: 569 HAALRQVLGEHVHQKGSMVTAGRLRFDFSNPSALSPAELEQIERIVNDQVRGNSEIITEI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M + A A GA AL G KY D VRV+++ + S LCGGTH TG+I L ++SE Sbjct: 629 MPIDQARAKGAMALFGEKYEDEVRVLTMGTD---CFSVELCGGTHARRTGDIGLFQLISE 685 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK---- 769 + AG+RRIEA+TG A + + + ++L +++S +K + NVVG+V + E R+ Sbjct: 686 GGVAAGVRRIEAVTGAAALALITNRHQQLVAISSAVKGNDENVVGKVTALVERVRQLEKE 745 Query: 770 LQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L+ A+R + E +S ++A V ++ ++ D+K L+ + D L+ K+ I++L Sbjct: 746 LEKQSAQRASRAGEEIISQSFELAGVKVLAAVLENQDTKALREMCDKLRDKLGDAIVVL- 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G S+E K +++ V++ L + A DL A + GG GGGRP MA +GG A Sbjct: 805 GASQEGKVNLVAGVSKTLSSKVKAGDLVNHVASQV-GGKGGGRPDMATAGGSQPENLGLA 863 Query: 889 IAGVASFL 896 IA V +L Sbjct: 864 IASVRDWL 871 >gi|198283180|ref|YP_002219501.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667664|ref|YP_002425409.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247701|gb|ACH83294.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519877|gb|ACK80463.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 877 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/887 (44%), Positives = 534/887 (60%), Gaps = 39/887 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +IR FLE+F + GH+++PSS LIP NDPTL+FTN+GMVPFK++F G E Y+ Sbjct: 2 QAQAIRQAFLEYFVEQGHQIVPSSPLIPRNDPTLLFTNAGMVPFKDVFLGLETRPYRRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK I AW LT+ L Sbjct: 62 SSQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGFAWRFLTERLGLPP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L+ITVY+ED+EA +W G+ ++ R DNFWSM +TGPCGPCSEIF+D G Sbjct: 122 EKLWITVYEEDDEAADIWMNEIGIDPARLSRCGEKDNFWSMGDTGPCGPCSEIFYDHGPH 181 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 IPGG PGS EE G+RYIEIWNLVFMQF++ + LPK S+DTGMGLER+A VLQ Sbjct: 182 IPGGPPGSPEEDGDRYIEIWNLVFMQFDRDSSGTLTPLPKPSVDTGMGLERLAAVLQGVH 241 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD DLFK LI A+ ++G Y + ++ RV+ DH+R+ SFLI DG+LPANEGRGY Sbjct: 242 NNYDTDLFKPLIAAAATISGKTYGSDAATDISLRVLADHIRACSFLITDGVLPANEGRGY 301 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + R LG L+ L EMGSA+PEL +A+ +E L E+ RF Sbjct: 302 VLRRIIRRAVRHGRKLGMETVFFHQLVAPLVAEMGSAFPELTRAQREVERALEREETRFR 361 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ ++ L + G++ F+L DT G P+D+ DI R L +D+ + Sbjct: 362 ETLERGLSLLEEAIADLAAGAAIPGEIIFRLADTFGFPVDLTADIARERDLI-MDMEGYE 420 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ EQRSR+RA G G TE+++ L + T+F GY Sbjct: 421 AAMAEQRSRSRAAWAGSGEVKTERVYHDLAMRLPVTEFTGYS------------------ 462 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+++ GE V +G V+ D+TPFY E+GGQ GD G D Sbjct: 463 -----TCADEGKVVALIRDGEEVAFLEAGDMGVVILDRTPFYGESGGQAGDRGELQSDDA 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +TD QK + VH +E G LR +V +ID RR + +HSATHLLH AL Sbjct: 518 LFAVTDTQKPMGHLHVHLGRMESGRLRVGDMVVASIDEVARRATAAHHSATHLLHAALRN 577 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSHV Q GS + P+ LRFD + +P+T+A+L+ IE VN I N+ TRI+ +A Sbjct: 578 ILGSHVQQKGSLVNPERLRFDFSQPEPVTAAQLREIERVVNAAIRNNVGAETRILPVAEA 637 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA AL G KY D VRVV + G S LCGGTHV + G+I + I+SES + AG Sbjct: 638 QALGAMALFGEKYGDEVRVVRM-----GDFSMELCGGTHVEALGDIGVFKILSESGVAAG 692 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777 IRRIEA+TG A + +E+L++ A LKV+ + R+ + E R+L +L KR Sbjct: 693 IRRIEAVTGAVALEAIQRDEERLQAAAGLLKVAPAELDQRLAQTLERLRQLEKELEKVKR 752 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + DV + +I + D K L+ +D L+ ++ G+I+L G+ +EK Sbjct: 753 DEAARAGADLAAEAEDVGGVPVLIRRLEGMDGKALRDALDRLRSQLPDGVIVLAGVEREK 812 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 A ++ V + L R +A +L A+ L GG GGGRP +AQ+G N Sbjct: 813 VA-LIAGVGKGLTGRVHAGELVNTVAQPL-GGKGGGRPELAQAGAGN 857 >gi|296390743|ref|ZP_06880218.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PAb1] Length = 874 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/912 (45%), Positives = 560/912 (61%), Gaps = 61/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L++AS + G ++ + +V+ DH+RS SFLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKTE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L + ++ G+V FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIARERELT-ID 419 Query: 415 IISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RARA S G+ + SL + G T+F+GY + Sbjct: 420 EDGFEREMEAQRERARASSAFGMD-------YNSLVKVDGETRFLGYQGV---------- 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +G IV A+ + G+ VE G++ VV DQTPFYAE+GGQ+GD+G Sbjct: 463 ------------SGAGQIV-ALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDSGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D KA G +HH +V RG L ++ +D R+ ++NHSATHLL Sbjct: 510 LEAAGVRFDVRDT-TKAGGAHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I + +LK++ED VN I +N V T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVETEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I SE Sbjct: 629 TDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AG+RRIEA+TG A ++L G +E+LK AS +K S+ N++ ++ + E R L + Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLEKE 744 Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K K +DLS +I ++ + +D K L +++D L+ K+ +I+L Sbjct: 745 LEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVILLG 804 Query: 829 GISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G E V++V VT+DL + A +L + A GG GGGRP MAQ GG + K D Sbjct: 805 G---ELDGKVVLVAGVTQDLTGQLKAGELMK-QAAAAVGGKGGGRPDMAQGGGTDAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F+++ Sbjct: 861 EALALAQRFVEQ 872 >gi|46579502|ref|YP_010310.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough] gi|48428505|sp|P61700|SYA_DESVH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|46448916|gb|AAS95569.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. Hildenborough] gi|311233316|gb|ADP86170.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris RCH1] Length = 879 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 542/910 (59%), Gaps = 47/910 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLEF++ +GHE + SSSL+P +DP+L+FTN+GMV FK IF GQEK Y Sbjct: 1 MITANEIRRRFLEFYKAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW LT+E L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEELKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TV+ +D+EA +LW K S + A++I R+ DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PKERLYATVFRDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E C P G + +R++EIWNLVFMQ++Q +R LPK SIDTGMGLER+ V Sbjct: 181 EHMTCGPDCGIGKC-DCDRFLEIWNLVFMQYDQDATGKREPLPKPSIDTGMGLERITAVC 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295 Q +N+D D+F+ +IQ + + + Y ++ + RVI DH R+ +F+I DGILP+NE Sbjct: 240 QGVFSNFDTDIFQAIIQYTCGLANVSYRSDDETDTALRVIADHSRAIAFMITDGILPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + RL+G T+ + + MG YPEL + + +R E+ Sbjct: 300 GRGYVLRRLIRRAYRFGRLIGLTDTFLHKTALKVVDIMGDDYPELRENSDFMARVVREEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 +RF +TLD+GL +L+ L+ L + GD+AF+LYDT G PLDI+ DI RG + + Sbjct: 360 DRFNRTLDKGLSMLEDELATLSASGAAHVPGDIAFRLYDTFGFPLDIVNDIAEKRGFS-V 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F ++EQ+ RA+A G G + L E+ ++FIGYD Sbjct: 419 DEDGFKALMKEQKERAKAAWKGSGEKDIASRFQPLLEEGMRSEFIGYDH----------- 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 LC G IV + + VE +GQK +V ++TPFY +GGQ GD G Sbjct: 468 --LC---------GEGRIVALMDEHALAVERLAAGQKGYLVTNRTPFYGASGGQSGDIGT 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++++ D K + + VHH G + + + LT+ +R + NH+ THLL Sbjct: 517 IASPSGKVRVVDTIKPSPELVVHHVEAVEGDILLDQEVDLTVTEDDRVASARNHTCTHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + PD LRFD TH P+T EL ++E VN +I ++P+ T Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAPMTPEELAAVEREVNRVIMADIPLETDH 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ +DA+ GA AL G KY D VRVV++ E S LCGGTH+ +TG+ L IVSE Sbjct: 637 MHYDDAVKRGAMALFGEKYGDEVRVVAIADE-----SVELCGGTHLRATGQAGLFLIVSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG+RRIEA+TG A ++ Q + L++ LK G +V RVE + +E R L+ Sbjct: 692 SGVAAGVRRIEALTGWNAMHAVLAQRSEQAQLSAMLKARPGEIVSRVESLQKENRTLRKD 751 Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + Q N+ D +A V ++ + + K L+ +MD ++ K+ SGI L Sbjct: 752 MERAAAQATSGQGRNIMD-EATDVAGVKLLAAKVEVPNVKALRDLMDDVRSKLVSGIACL 810 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K ++I V++DL RF A L + ++A+V GG GGGRP MAQ+GG N D Sbjct: 811 AAVDGD-KVQLIIAVSKDLQTRFTAPQLIKDVAAEV--GGSGGGRPDMAQAGGTNPAGID 867 Query: 887 QAIAGVASFL 896 A A + S + Sbjct: 868 AAFAKLRSLI 877 >gi|329122821|ref|ZP_08251393.1| alanine--tRNA ligase [Haemophilus aegyptius ATCC 11116] gi|327472085|gb|EGF17523.1| alanine--tRNA ligase [Haemophilus aegyptius ATCC 11116] Length = 874 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/914 (42%), Positives = 551/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKNDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 I+ +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-INEQAFDRKMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G + + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK + +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSDFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VAQAIKVAQDWLNK 872 >gi|163802982|ref|ZP_02196869.1| alanyl-tRNA synthetase [Vibrio sp. AND4] gi|159173272|gb|EDP58100.1| alanyl-tRNA synthetase [Vibrio sp. AND4] Length = 865 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/917 (43%), Positives = 555/917 (60%), Gaps = 78/917 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LTK L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTKTLKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +T+Y+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 DRLLVTIYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E FG+TL+RG+ +L+ L ++ G D ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 362 EEENFGRTLERGMAILNEALDNISSQGTDGKVLDGETVFKLYDTYGFPADLTNDVARERE 421 Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F +A+EEQR RAR A + G K+ T+F GY +G Sbjct: 422 FV-IDEEGFEKAMEEQRQRAREAGNFGTDYNAAIKV-------DAQTEFCGYTGTKG--- 470 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 SS V A+ +G V +G K +V +TPFYAE+GGQ Sbjct: 471 --------------------SSSVAAMFVEGNEVASLSAGDKAIIVLGETPFYAESGGQC 510 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + ++ D QK I HH I+ G+L + + +D + R +S+NHS Sbjct: 511 GDAGEIRTESGVFRVEDTQKLGNAI-AHHGIMAEGVLAKDDEVATIVDAERRAAISLNHS 569 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + DGLRFD +H + +T+AELK +E VN + +N Sbjct: 570 ATHLLHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQVRRNHT 629 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + T +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L Sbjct: 630 IETNVMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLF 684 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIW 764 I SE I AGIRRIEA+TG+ A + Q +EKL A + + + Sbjct: 685 KITSEGGIAAGIRRIEAVTGEGALDAIEAQTTKYEEKLAESAQ-----------KAKSLE 733 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821 +E +KLQ A + N+ K+ D+N +I+ + DSK L++++D ++ ++ Sbjct: 734 KEIQKLQDKMAAAE-SANI----MGKVQDINGTKALIAALEGADSKNLRTMVDDIKNQVG 788 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 SG+I+L ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 789 SGVILLANVNGD-KIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTD 846 Query: 882 GNKADQAIAGVASFLKK 898 +A+ V +L++ Sbjct: 847 VAALPEAMKSVQPWLEE 863 >gi|120602949|ref|YP_967349.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris DP4] gi|205830078|sp|A1VEQ6|SYA_DESVV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120563178|gb|ABM28922.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris DP4] Length = 879 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 542/910 (59%), Gaps = 47/910 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLEF++ +GHE + SSSL+P +DP+L+FTN+GMV FK IF GQEK Y Sbjct: 1 MITANEIRRRFLEFYKAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW LT+E L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEELKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TV+ +D+EA +LW K S + A++I R+ DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PKERLYATVFRDDDEAEQLWLKHSDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E C P G + +R++EIWNLVFMQ++Q +R LPK SIDTGMGLER+ V Sbjct: 181 EHMTCGPDCGIGKC-DCDRFLEIWNLVFMQYDQDATGKREPLPKPSIDTGMGLERITAVC 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295 Q +N+D D+F+ +IQ + + + Y ++ + RVI DH R+ +F+I DGILP+NE Sbjct: 240 QGVFSNFDTDIFQAIIQYTCGLANVSYRSDDETDTALRVIADHSRAIAFMITDGILPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + RL+G T+ + + MG YPEL + + +R E+ Sbjct: 300 GRGYVLRRLIRRAYRFGRLIGLTDTFLHKTALKVVDIMGDDYPELRENSDFMARVVREEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 +RF +TLD+GL +L+ L+ L + GD+AF+LYDT G PLDI+ DI RG + + Sbjct: 360 DRFNRTLDKGLSMLEDELATLSASGAARVPGDIAFRLYDTFGFPLDIVNDIAEKRGFS-V 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F ++EQ+ RA+A G G + L E+ ++FIGYD Sbjct: 419 DEDGFKALMKEQKERAKAAWKGSGEKDIASRFQPLLEEGMRSEFIGYDH----------- 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 LC G IV + + VE +GQK +V ++TPFY +GGQ GD G Sbjct: 468 --LC---------GEGRIVALMDEHALAVERLAAGQKGYLVTNRTPFYGASGGQSGDIGT 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++++ D K + + VHH G + + + LT+ +R + NH+ THLL Sbjct: 517 IASPSGKVRVVDTIKPSPELVVHHVEAVEGDILLDQEVDLTVTEDDRVASARNHTCTHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + PD LRFD TH P+T EL ++E VN +I ++P+ T Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAPMTPEELAAVEREVNRVIMADIPLETDH 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ +DA+ GA AL G KY D VRVV++ E S LCGGTH+ +TG+ L IVSE Sbjct: 637 MHYDDAVKRGAMALFGEKYGDEVRVVAIADE-----SVELCGGTHLRATGQAGLFLIVSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG+RRIEA+TG A ++ Q + L++ LK G +V RVE + +E R L+ Sbjct: 692 SGVAAGVRRIEALTGWNAMHAVLAQRSEQAQLSAMLKARPGEIVSRVESLQKENRTLRKD 751 Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + Q N+ D +A V ++ + + K L+ +MD ++ K+ SGI L Sbjct: 752 MERAAAQATSGQGRNIMD-EATDVAGVKLLAAKVEVPNVKALRDLMDDVRSKLVSGIACL 810 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K ++I V++DL RF A L + ++A+V GG GGGRP MAQ+GG N D Sbjct: 811 AAVDGD-KVQLIIAVSKDLQTRFTAPQLIKDVAAEV--GGSGGGRPDMAQAGGTNPAGID 867 Query: 887 QAIAGVASFL 896 A A + S + Sbjct: 868 AAFAKLRSLI 877 >gi|51595175|ref|YP_069366.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953] gi|170025588|ref|YP_001722093.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII] gi|186894190|ref|YP_001871302.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+] gi|59798514|sp|Q66E68|SYA_YERPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830293|sp|B2K5X9|SYA_YERPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830296|sp|B1JJA0|SYA_YERPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|51588457|emb|CAH20065.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953] gi|169752122|gb|ACA69640.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII] gi|186697216|gb|ACC87845.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+] Length = 875 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/912 (43%), Positives = 569/912 (62%), Gaps = 62/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ + SL A+QF GYD ++ Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQQ------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + GE V+E +G++ VV ++TPFY E+GGQ+GD G Sbjct: 467 ----------------HATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +TD QK + I H I+ G LR S+ +D R ++ +NHSATHL Sbjct: 511 ELKNATATFSVTDTQKYGQAIG-HVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 570 LHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A GA AL G KY+D+VRV+++ G S+ LCGGTH S TG+I L I++ Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILT 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + R Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLER 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825 +LQ + ++ Q + S K+ +N + ++S++D+ E L++++D L+ ++ S II Sbjct: 745 ELQQLKDQQAAQESASLSSSAKL--INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L + + K S+++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG + Sbjct: 803 VL-ATTADDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQA 859 Query: 885 ADQAIAGVASFL 896 A+A V +++ Sbjct: 860 LPAALASVEAWV 871 >gi|153950576|ref|YP_001402195.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758] gi|205830292|sp|A7FLR7|SYA_YERP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|152962071|gb|ABS49532.1| alanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 31758] Length = 875 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/912 (43%), Positives = 569/912 (62%), Gaps = 62/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ + SL A+QF GYD ++ Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQQ------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + GE V+E +G++ VV ++TPFY E+GGQ+GD G Sbjct: 467 ----------------HATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +TD QK + I H I+ G LR S+ +D R ++ +NHSATHL Sbjct: 511 ELKNATATFSVTDTQKYGQAIG-HVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 570 LHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A GA AL G KY+D+VRV+++ G S+ LCGGTH S TG+I L I++ Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILT 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + R Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLER 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825 +LQ + ++ Q + S K+ +N + ++S++D+ E L++++D L+ ++ S II Sbjct: 745 ELQQLKDQQAAQESASLSSSAKL--INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L + + K S+++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG + Sbjct: 803 VL-ATTTDDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQA 859 Query: 885 ADQAIAGVASFL 896 A+A V +++ Sbjct: 860 LPAALASVEAWV 871 >gi|221133281|ref|ZP_03559586.1| alanyl-tRNA synthetase [Glaciecola sp. HTCC2999] Length = 860 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/897 (44%), Positives = 557/897 (62%), Gaps = 49/897 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL++F ++GH+ + SSSL+P +DPTL+FTN+GM FK++F G E+ Y Sbjct: 4 STAQIRQAFLDYFGQHGHQSVSSSSLVPHDDPTLLFTNAGMNQFKDVFLGAEQRNYSRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LTKE L Sbjct: 64 SSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWTFLTKELGLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TVY ED+EAF +W+ GL +KIIRI T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 124 EKLLVTVYAEDDEAFAIWENEIGLPPEKIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 183 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG+PGS EE G+R+IEIWNLVFMQ+ + LPK SIDTGMGLER++ +LQ Sbjct: 184 IWGGVPGSPEEDGDRFIEIWNLVFMQYNKSADGTMEPLPKPSIDTGMGLERISAILQNVH 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+ID+F+ LI+A+ ++ G + + RVI DH+RS SFLI DG++P+NEGRGYVL Sbjct: 244 SNYEIDIFQALIKAAAEIVGTVDLDDKSL--RVIADHIRSCSFLICDGVMPSNEGRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG + L+ AL +MG AYPEL++ +IE+ LR E+E+F +T Sbjct: 302 RRIIRRAVRHGYKLGAQDIFFYKLVSALTQQMGDAYPELVEQLPVIEKVLRVEEEQFSRT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG+ +L L+ L D ++ G+V FKLYDT+G P D+ D+ + ID F A Sbjct: 362 LERGMNILTQQLTELEGD-VVPGEVVFKLYDTYGFPADLTADVAREHNVR-IDETGFETA 419 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++ QR+RA+ S G+ E + + AT F GY Sbjct: 420 MQAQRARAQQAS-NFGTDYNEALKIT-----HATDFTGY--------------------- 452 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIR 540 D T V ++++ IV+ V +GQK V+ D T FYAE+GGQ GD+G + D Sbjct: 453 -DKTTDVGTVLEIIVENTS-VTSIDAGQKGIVILDNTAFYAESGGQTGDSGVLKLNDAAV 510 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +TD QK A F H I + L ++V +D R + +NHSATHLLH AL + Sbjct: 511 FTVTDTQKLANA-FGHQGIA-KAKLSVGANVVTQVDDSRREAIKLNHSATHLLHAALREL 568 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + + LRFD H + +T+ +L SIE VN I QN + T++M ++A Sbjct: 569 LGEHVAQKGSLVDDEKLRFDFAHYEAVTTEQLISIERLVNAQIRQNHELTTKLMELDEAK 628 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 ASGA AL G KY+++VRVVS+ G S+ LCGGTHVS TG+I L I SES I +G+ Sbjct: 629 ASGAMALFGEKYDEKVRVVSM-----GNFSTELCGGTHVSRTGDIGLCKITSESGIASGV 683 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEAITG+ A +++ Q L++ A+ LKV N++ R+ + + + + K Q Sbjct: 684 RRIEAITGEAAINYVQEQAYLLQNAANILKVEPINLIERINNNQDLLKATEKSLNQAKQQ 743 Query: 781 LNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + S I + N + + +V+ K LK ++D L++KI SGII+L G+ + K Sbjct: 744 LASQQGSDLMNQVQVIKEHNVLVANLPDVEVKALKGMLDELKQKISSGIIVL-GVPGDGK 802 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +++ VT DL+++ A +L A + GG GGGRP MAQ+GG + A+ V Sbjct: 803 VNLIAGVTGDLINKIKAGELVNFVASQV-GGKGGGRPDMAQAGGTKPENLEHALTSV 858 >gi|148284335|ref|YP_001248425.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong] gi|205830167|sp|A5CD03|SYA_ORITB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146739774|emb|CAM79640.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Boryong] Length = 891 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/889 (43%), Positives = 536/889 (60%), Gaps = 38/889 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N++ IRTTF+EFF+K GH SSSL+P NDP+L F N+G+V FK+ E Y V Sbjct: 8 NINQIRTTFIEFFKKYGHHYASSSSLVPGNDPSLFFVNAGIVQFKDYVRAPETSKYSRVV 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-GYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDL++VG T RHHTFFEMLGNFSFG K +QL W LTKE +D Sbjct: 68 TCQKCVRAGGKHNDLESVGYTARHHTFFEMLGNFSFGEDNAKADFMQLIWSFLTKELFID 127 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL +TVY D E KLW+ I+GL +IIRI T+DNFWSM GPCGPC+EIF+D G+ Sbjct: 128 EDRLIVTVYHTDHETAKLWRSIAGLDDSRIIRIKTDDNFWSMGPVGPCGPCTEIFYDHGD 187 Query: 182 CIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 IPGGLPG+ +E G RY+EIWN+VFMQ+EQ N+ R L K IDTG GLER+ATVLQ Sbjct: 188 KIPGGLPGTKDENGGRYVEIWNIVFMQYEQLNESTRVELAKRCIDTGAGLERIATVLQGV 247 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYDIDLFK+LI E +T +K G +HR+I DHLR+S+FLIADG++P+N+GRGYV Sbjct: 248 YDNYDIDLFKNLIANIEHLTKIKSVGEANFSHRIIADHLRASAFLIADGVMPSNDGRGYV 307 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAM LG EP+M L+P L EMG Y EL + LI LR+E+E+F Sbjct: 308 LRRIMRRAMNQIHQLGCKEPVMHQLVPGLINEMGDFYKELRIRQELITYLLRNEEEKFKT 367 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL +GL LL+ +L L+G +AFKLYDT+G P D+ QDIL R ++ I+ F+Q Sbjct: 368 TLSKGLKLLEEESKNLTSGSQLSGHIAFKLYDTYGFPFDLTQDILKKRSIS-INKTEFDQ 426 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQ++RAR G GS + + LKE++ AT+F+GY L + Sbjct: 427 NMLEQQNRARQLWKGQGSNKEQLLLEKLKEEFRATEFVGYSLYQA--------------- 471 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQTPFYAEAGGQLGDTGCA 534 IV +++Q + VE Q + ++ +QTPFY ++GGQ+GD G Sbjct: 472 --------EGIVISLIQDNQYVEYIDINQVDDNNKEFWLITNQTPFYGQSGGQMGDIGII 523 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + +TD K VH + G + + + ID Q R QL I+HSATH+LH Sbjct: 524 KNNECTIHVTDTIKLFGCTHVHICKIVSGKININAVVHMAIDKQYRTQLQIHHSATHILH 583 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILG+H+ Q GS + D LRFDV+H I+ L IE+ VN+II N V IM Sbjct: 584 AALREILGNHIIQKGSLVAYDYLRFDVSHPTSISREILTKIENRVNEIILNNTAVKLMIM 643 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + AIA GA AL KY D VR +S+ E D +S LCGGTHV TG+I I+SE Sbjct: 644 PFDQAIAHGAVALFEEKYGDEVRAISIGETSDARYYSFELCGGTHVKYTGDIGAFRILSE 703 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QL 772 S+I AG+RR+EAI G+ E L +A V++ ++ +++ I EE L + Sbjct: 704 SAIAAGVRRVEAIAGKHVIKQARRNSELLDLIAEKFSVTKQTIMSKIDGIIEENNLLKKQ 763 Query: 773 IHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQKKIQS--GIIMLVG 829 +H + QL + + IA D+ + + ++ +L+ V A+ ++ ++M+V Sbjct: 764 LHQLKYNQLILCEKDIQNIADDIGTIKLVYKNIEDYDLQIVRKAVSNTTKNIKNLVMVVI 823 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + +KK +++I V++++ ++ A +L + LGG GGG +AQ G Sbjct: 824 SNNDKKNTIIIGVSDNITNKIQANNLVKEIINYLGGSGGGSAT-LAQIG 871 >gi|320155348|ref|YP_004187727.1| alanyl-tRNA synthetase [Vibrio vulnificus MO6-24/O] gi|319930660|gb|ADV85524.1| alanyl-tRNA synthetase [Vibrio vulnificus MO6-24/O] Length = 860 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/907 (43%), Positives = 549/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W + G+ AD+IIRI +DNFW+M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ ++ G + N + RVI DH+RS SFLIADG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEIVGCEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR + G+ KI + T+F GY +G Sbjct: 420 DEAGFEKAMEEQRQRAR-EAGQFGTDYNAKI-----KTESETEFCGYTGTQG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +S+V I +GE + +G K ++ +TPFYAE+GGQ GD+G Sbjct: 466 ---------------NSVVAEIFVEGEAADSLSAGDKAIIILGETPFYAESGGQCGDSGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + Q+ D QK I HH ++ G+L + +D + R +S+NHSATHLL Sbjct: 511 LKTESGLFQVEDTQKLGNAI-AHHGVLVEGVLAKGDQVSAIVDAERRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AELK +E VN I +N + T I Sbjct: 570 HAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHAIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 630 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A + Q +EKL+ A+ K + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEAALEAIDAQARKFEEKLQDAANKAKSLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L + N+ D +IA V + + D+K L+ ++D L+ ++ SGIIML Sbjct: 738 L-----ASQASANLID-QVKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSAL 849 Query: 890 AGVASFL 896 A V +++ Sbjct: 850 ASVDAWI 856 >gi|15596100|ref|NP_249594.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1] gi|107100361|ref|ZP_01364279.1| hypothetical protein PaerPA_01001386 [Pseudomonas aeruginosa PACS2] gi|218893128|ref|YP_002441997.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa LESB58] gi|20532264|sp|Q9I553|SYA_PSEAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|9946804|gb|AAG04292.1|AE004524_9 alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1] gi|218773356|emb|CAW29168.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa LESB58] Length = 874 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/912 (45%), Positives = 560/912 (61%), Gaps = 61/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L++AS + G ++ + +V+ DH+RS SFLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKTE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L + ++ G+V FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIARERELT-ID 419 Query: 415 IISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RARA S G+ + SL + G T+F+GY + Sbjct: 420 EDGFEREMEAQRERARASSAFGMD-------YNSLVKVDGETRFLGYQGV---------- 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +G IV A+ + G+ VE G++ VV DQTPFYAE+GGQ+GD+G Sbjct: 463 ------------SGAGQIV-ALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDSGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D KA G +HH +V RG L ++ +D R+ ++NHSATHLL Sbjct: 510 LEAAGVRFDVRDT-TKAGGAHLHHGVVARGNLSVGGAVKAEVDASVRQATALNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I + +LK++ED VN I +N V T Sbjct: 569 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVETEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I SE Sbjct: 629 TDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AG+RRIEA+TG A ++L G +E+LK AS +K S+ N++ ++ + E R L + Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLVKGSRDNLLDKLGALLERNRSLEKE 744 Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K K +DLS +I ++ + +D K L +++D L+ K+ +I+L Sbjct: 745 LEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVILLG 804 Query: 829 GISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G E V++V VT+DL + A +L + A GG GGGRP MAQ GG + K D Sbjct: 805 G---ELDGKVVLVAGVTQDLTGQLKAGELMK-QAAAAVGGKGGGRPDMAQGGGTDAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F+++ Sbjct: 861 EALALAQRFVEQ 872 >gi|167582193|ref|ZP_02375067.1| alanyl-tRNA synthetase [Burkholderia thailandensis TXDOH] Length = 874 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/911 (42%), Positives = 544/911 (59%), Gaps = 55/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSEI Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 360 EERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V E +G+ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G+L+ + ID R + + NHSATHL Sbjct: 510 VLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDVVRAEIDAARRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + R Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV+ Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K KL + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 744 ELGALKSKLASSQGDELVQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 804 AAV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861 Query: 888 AIAGVASFLKK 898 A+AGV ++++ Sbjct: 862 ALAGVKGWVEE 872 >gi|22124793|ref|NP_668216.1| alanyl-tRNA synthetase [Yersinia pestis KIM 10] gi|45440238|ref|NP_991777.1| alanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001] gi|108810954|ref|YP_646721.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516] gi|145600311|ref|YP_001164387.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides F] gi|153997648|ref|ZP_02022748.1| alanyl-tRNA synthetase [Yersinia pestis CA88-4125] gi|162420472|ref|YP_001605466.1| alanyl-tRNA synthetase [Yersinia pestis Angola] gi|165925794|ref|ZP_02221626.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936759|ref|ZP_02225326.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. IP275] gi|166010167|ref|ZP_02231065.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213026|ref|ZP_02239061.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42003004] gi|167398342|ref|ZP_02303866.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421632|ref|ZP_02313385.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423275|ref|ZP_02315028.1| alanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467648|ref|ZP_02332352.1| alanyl-tRNA synthetase [Yersinia pestis FV-1] gi|218930326|ref|YP_002348201.1| alanyl-tRNA synthetase [Yersinia pestis CO92] gi|229838925|ref|ZP_04459084.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896406|ref|ZP_04511574.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides A] gi|229899492|ref|ZP_04514633.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229901170|ref|ZP_04516293.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516] gi|270489353|ref|ZP_06206427.1| alanine--tRNA ligase [Yersinia pestis KIM D27] gi|20532253|sp|Q8ZBT8|SYA_YERPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|122385127|sp|Q1CLK9|SYA_YERPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830294|sp|A9R0V7|SYA_YERPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830295|sp|A4TQ52|SYA_YERPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21957617|gb|AAM84467.1|AE013691_6 alanyl-tRNA synthetase [Yersinia pestis KIM 10] gi|45435094|gb|AAS60654.1| alanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001] gi|108774602|gb|ABG17121.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516] gi|115348937|emb|CAL21896.1| alanyl-tRNA synthetase [Yersinia pestis CO92] gi|145212007|gb|ABP41414.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides F] gi|149289285|gb|EDM39365.1| alanyl-tRNA synthetase [Yersinia pestis CA88-4125] gi|162353287|gb|ABX87235.1| alanyl-tRNA synthetase [Yersinia pestis Angola] gi|165915408|gb|EDR34018.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. IP275] gi|165922406|gb|EDR39583.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. F1991016] gi|165991074|gb|EDR43375.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1979001] gi|166205813|gb|EDR50293.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960551|gb|EDR56572.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050846|gb|EDR62254.1| alanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057445|gb|EDR67191.1| alanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681895|gb|EEO77988.1| alanyl-tRNA synthetase [Yersinia pestis Nepal516] gi|229686984|gb|EEO79059.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India 195] gi|229695291|gb|EEO85338.1| alanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700480|gb|EEO88511.1| alanyl-tRNA synthetase [Yersinia pestis Pestoides A] gi|270337857|gb|EFA48634.1| alanine--tRNA ligase [Yersinia pestis KIM D27] gi|320016499|gb|ADW00071.1| alanyl-tRNA synthetase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 875 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/912 (43%), Positives = 569/912 (62%), Gaps = 62/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SS+L+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ + SL A+QF GYD ++ Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQQ------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + GE V+E +G++ VV ++TPFY E+GGQ+GD G Sbjct: 467 ----------------HATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +TD QK + I H I+ G LR S+ +D R ++ +NHSATHL Sbjct: 511 ELKNATATFSVTDTQKYGQAIG-HVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 570 LHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A GA AL G KY+D+VRV+++ G S+ LCGGTH S TG+I L I++ Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILT 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + R Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLER 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825 +LQ + ++ Q + S K+ +N + ++S++D+ E L++++D L+ ++ S II Sbjct: 745 ELQQLKDQQAAQESASLSSSAKL--INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAII 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L + + K S+++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG + Sbjct: 803 VL-ATTADDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQA 859 Query: 885 ADQAIAGVASFL 896 A+A V +++ Sbjct: 860 LPAALASVEAWV 871 >gi|219870706|ref|YP_002475081.1| alanyl-tRNA synthetase [Haemophilus parasuis SH0165] gi|219690910|gb|ACL32133.1| alanyl-tRNA synthetase [Haemophilus parasuis SH0165] Length = 875 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/904 (42%), Positives = 552/904 (61%), Gaps = 55/904 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR FLEFFQ GH ++PSSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTSEIRQAFLEFFQSKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLDKRSYNR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPDAIAFAWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W + G+ A+ I+RI N DNFW M +TGPCGP Sbjct: 121 ALPKEKLWVTVYETDDEAYDIWNREIGVPAEHIVRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS+EE G+R+IE+WN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSAEEDGDRFIEVWNVVFMQFNRQADGTLKKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+F+ LI+ + + N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFQALIKEIASLLNVTDLDNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + +LG L+P L MG A L Q + I++ Sbjct: 299 MPSNEGRGYVLRRIIRRAVRHGNILGAKSAFFYQLVPTLAKAMGQAGEILTQKQAHIQKA 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+++F +TL+RGL LL+ L+ + ++++L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEDQFARTLERGLALLEDALTKV-ENKVLSGEVAFKLYDTYGFPLDLTADVCRERSI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + ++ QR+RA+A S GT + G+T+F GY++ Sbjct: 418 T-IDEAGFEREMQAQRARAQASS---NFGTDYNYVIKVD---GSTEFKGYEVTE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 C+ + V A+ G+ VE SG+ VV D+T FY E+GGQ+GD Sbjct: 465 ------CE-----------ATVVALFSNGKAVEAIQSGENAVVVLDRTAFYGESGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + ++ D QK + +F H + G L + ++ R +++NHSAT Sbjct: 508 SGVIASEICNFEVNDTQKYGQ-VFGHIGQLASGTLSVGDKVKAEVNATRRHAITLNHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ A+L+ IE +N I +N+ V Sbjct: 567 HLLHSALRQVLGDHVAQKGSLVSENSLRFDFSQGEAISKADLEEIERIINTKIRENIVVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M+ E A GA AL G KY DRVRVV + S LCGGTHV TGEI L + Sbjct: 627 TEVMDLESAKQKGAMALFGEKYGDRVRVVDMT----AAFSVELCGGTHVKQTGEIGLFKV 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769 VSE ++ AG+RRIEA+TG+ A L Q + L A LK ++V +++++ E+ +K Sbjct: 683 VSEGAVAAGVRRIEAVTGENAIGLLHQQQQILNQSAELLKADTASLVEKIQQLQEKSKKV 742 Query: 770 ---LQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 LQ + K Q E +I VN + + VD+K L++++D L+ ++ S +I Sbjct: 743 EKELQQLKDKLAAQAGGELAKQAQQINGVNVVVQRLENVDAKALRTMVDDLKNQLGSAVI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + + E K ++++ VT+DL D+ NA +L L A+ + GG GGGR MA +GG Sbjct: 803 VFATQTDE-KVNLIVGVTKDLTDKVNAGELVGLMAQEV-GGKGGGRADMAMAGGSQPENI 860 Query: 886 DQAI 889 QA+ Sbjct: 861 TQAL 864 >gi|307825703|ref|ZP_07655920.1| alanyl-tRNA synthetase [Methylobacter tundripaludum SV96] gi|307733280|gb|EFO04140.1| alanyl-tRNA synthetase [Methylobacter tundripaludum SV96] Length = 870 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/900 (42%), Positives = 552/900 (61%), Gaps = 46/900 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +RT FLEFF++ GH + PSSSLIP NDPTL+FTN+GMV FK++F G++ Y T Sbjct: 7 AQLRTAFLEFFRERGHAIQPSSSLIPGNDPTLLFTNAGMVQFKDVFLGRDHRDYNKAATS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AWD LTKE ++ + Sbjct: 67 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFAWDFLTKELEIPAEK 126 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+ITV+DED EA K+W G+S + RI DNFWSM + GPCGPC+EIF+D G I Sbjct: 127 LWITVFDEDSEAEKIWLDDVGVSPVRFSRIGAKDNFWSMGDVGPCGPCTEIFYDHGADIA 186 Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS E+G+RYIEIWNLVFMQ+++ LPK S+DTGMGLER+A VLQ +N Sbjct: 187 GGPPGSPDEDGDRYIEIWNLVFMQYDRSADGSLTPLPKPSVDTGMGLERIAAVLQGVHSN 246 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y+IDLF+ L++A+ ++ G + + RVI DH+RS +FLIADG++P+NEGRGYV+RR Sbjct: 247 YEIDLFQKLLKAAAELAGTSDLTQSSL--RVIADHIRSCAFLIADGVMPSNEGRGYVVRR 304 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG + L+ L EMG A+PEL A+ +E L+ E+ERF +TL+ Sbjct: 305 IIRRAIRHGYRLGIRDVFFYKLVAPLAEEMGEAFPELKAAQEQVERVLKKEEERFAETLE 364 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +G+ +L+ ++ + + ++ GD F+LYDT+G P+D+ D L +D F A+ Sbjct: 365 QGMKILEACVAKM-EGSVIPGDTVFQLYDTYGFPVDLTADFARENNLT-VDHAGFETAMS 422 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR RAR+ S G+ + I + T+F GYD L D +V Sbjct: 423 AQRERARSAS-SFGADYDQDIKLDAQ-----TEFTGYDHL--------DDQVH------- 461 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + + ++G+ V+ G++ V+ D+TPFYAE+GGQ+GD G DG ++ Sbjct: 462 --------IIGLYKKGQPVDSLEDGEEGVVILDKTPFYAESGGQIGDCGKIEADGAVFEV 513 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 TD QK+ +F+H + G L + +R +NHSATHLLH AL +LG Sbjct: 514 TDTQKQGGNLFLHKGKLLTGTLTNGQLCDARVSAADRTATELNHSATHLLHAALRQVLGD 573 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV+Q GS + P+ LRFD +H +P+T++E+ ++E VN+ I N PV ++M ++DA+ +G Sbjct: 574 HVAQKGSLVNPERLRFDFSHFEPVTASEISTVERIVNEQIRANNPVSAQVMAKDDAVKAG 633 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRV+ + G S+ LCGGTHV G+I I++E+ + AG+RRI Sbjct: 634 AMALFGEKYGDEVRVLKI-----GEFSTELCGGTHVERAGDIGCFKIINETGVAAGVRRI 688 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQL 781 EA+TG + G+D L S+A +K + +VE++ E+ R L QL KL Sbjct: 689 EAVTGGGCIEWIAGRDHALASIAGLVKSAPEKTPEKVEQLIEKNRLLEKQLERLNAKLAS 748 Query: 782 NVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + + + DV ++ + VD K LK ++D L+ K+ S I+L + + K S+ Sbjct: 749 SAGNELGAQAVDVGGIKVLAVKLDGVDPKSLKDMVDQLKNKLGSAAIVLAVVDGD-KVSL 807 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + VT+D + R A DL A + GG GGGRP MAQ+GG + + A+A V +++K+ Sbjct: 808 IAGVTKDQMGRIKAGDLVNFVATKV-GGKGGGRPDMAQAGGNDPSGLADALAQVPAWVKE 866 >gi|24374938|ref|NP_718981.1| alanyl-tRNA synthetase [Shewanella oneidensis MR-1] gi|38372525|sp|Q8EBS1|SYA_SHEON RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|24349653|gb|AAN56425.1|AE015779_2 alanyl-tRNA synthetase [Shewanella oneidensis MR-1] Length = 874 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/907 (42%), Positives = 554/907 (61%), Gaps = 58/907 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FLEFF+ NGH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y TT Sbjct: 6 AALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRATTA 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + R Sbjct: 66 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLMLPKER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EIF+ Sbjct: 126 LCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFY 185 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A + Sbjct: 186 DHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIAAI 245 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q +NY+ID+F+ LI + ++ G+ N + RVI DH+RS +FL+ADG++P+NEG Sbjct: 246 MQGVHSNYEIDIFRALIAKAAEIIGVADLSNKSL--RVIADHIRSCAFLVADGVMPSNEG 303 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG TE L+P L MG A L + ++++E+ L++E+E Sbjct: 304 RGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAEEE 363 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +F +TL+RGL +LD L+ L D L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 364 QFARTLERGLGILDSALNELQGD-TLDGETVFKLYDTYGFPVDLTADVCRERNII-VDEA 421 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 422 GFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYSELTG----------- 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 ++ V A+ GE V +G VV D TPFYAE+GGQ+GD G + Sbjct: 465 ------------NAKVTALYLNGESVPAINTGDDAVVVLDVTPFYAESGGQVGDKGVLMA 512 Query: 537 DGIRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 GI + D QK +A G H + G L L +D + R + +NHS THLLH Sbjct: 513 QGIEFTVNDTQKFGQASG---HKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + ELK +E+ VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPFELKQVEELVNTQIRRNHELKVAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 AIDEAKEKGAMALFGEKYDSQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 I AG+RRIEA+TG A +++ Q +L+ AS LK +VV +++ ++ ++L ++ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAASLLKADAHSVVTKLKVQLDKMKQLEKEM 744 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVG 829 K KL VN ++ +I +++ E L+ + D L++K++S II+L G Sbjct: 745 QQLKDKLAAAASADLAGDAVVVNGVNVLIKKLEGVEAGALRGLQDELKQKLKSAIIVL-G 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +++E K +++ V+ DL+ + A +L + A + GG GGGRP MAQ+GG D A+ Sbjct: 804 VAQEGKVNLIAGVSNDLIAKIKAGELVAMVATQV-GGKGGGRPDMAQAGGSQPENLDAAL 862 Query: 890 AGVASFL 896 + V ++ Sbjct: 863 SQVLPWI 869 >gi|322514279|ref|ZP_08067338.1| alanine--tRNA ligase [Actinobacillus ureae ATCC 25976] gi|322119833|gb|EFX91853.1| alanine--tRNA ligase [Actinobacillus ureae ATCC 25976] Length = 874 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/904 (42%), Positives = 543/904 (60%), Gaps = 56/904 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSLQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ GGLPG+ EE G+RYIE+WN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDTFWGGLPGTPEEDGDRYIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEILTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S G+ + I G T FIGYD L Sbjct: 418 T-IDEAGFEAEMSAQRERAKASS-NFGTDYSNVIKVD-----GQTDFIGYDNLE------ 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 465 -----------------AQATIVGLFSNGKAVDTIHSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + ++D QK + +F H + G L + ++ R+ ++ NHSAT Sbjct: 508 NGLISTEICEFTVSDTQKYGQ-VFGHVGQLTSGSLAIGDKVTAHVEINRRQAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ D LRFD + + IT A+L+ IE VN I +N+ VV Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSEDALRFDFSQPEAITKAQLEEIERIVNRNIRENIQVV 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TGEI L + Sbjct: 627 IETMDIESAKQKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQHTGEIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769 VSE ++ AG+RR+EA+TG++A L Q ++ A LK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGVRRVEAVTGEKAMDWLHNQQRVIQQSAELLKADSNSLVEKIQQLQDKAKRT 741 Query: 770 ---LQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 LQ + K Q E +I VN + + V++K L++++D L+ + ++ I+ Sbjct: 742 EKELQQLKDKFAAQAGSELAKQASQINGVNVIVQKLEGVETKSLRTMVDDLKNQFENAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G + K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 VF-GSVADDKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQHL 859 Query: 886 DQAI 889 D A+ Sbjct: 860 DSAL 863 >gi|113868727|ref|YP_727216.1| alanyl-tRNA synthetase [Ralstonia eutropha H16] gi|123133735|sp|Q0K823|SYA_RALEH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|113527503|emb|CAJ93848.1| Alanyl-tRNA synthetase [Ralstonia eutropha H16] Length = 874 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/910 (43%), Positives = 544/910 (59%), Gaps = 59/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS IR+ FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y T+ Sbjct: 3 VSDIRSKFLQFFESKGHTVVRSSSLVPANDPTLLFTNSGMVQFKDVFLGTDKRPYTRATS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLTK + L Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAILYAWELLTKTYQLPAE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY ED+EA+ +W K G+ A++I+RI N DNFW MA+TGPCGPCSEIF Sbjct: 123 KLWVTVYAEDDEAYDIWAKEVGVPAERIVRIGDNKGARYASDNFWQMADTGPCGPCSEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIE+WNLVFMQF + + LPK +DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEVWNLVFMQFNRDEQGNMTPLPKPCVDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF+ LI+A+ + T + N + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQALIKAAARETHIDNLNQNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG P ++ L +MG AYPEL +A+ + E L++E+ Sbjct: 301 GRGYVLRRIIRRAIRHGYKLGQKTPFFHKMVADLVEQMGQAYPELAEAQSRVTEVLKAEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ERF +T++ G+ +LD L+ L GK L+G++AFKL+DT G PLD+ QD+ C Sbjct: 361 ERFFETIENGMSILDAALADLKLKGGK--TLDGELAFKLHDTFGFPLDLTQDV-CREQEI 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 G+D +F+ A+ QR +ARA K+ L+ T F GY+ L Sbjct: 418 GVDEAAFDAAMNRQREQARA-------AGKFKMAAGLEYTGDKTVFHGYEKLE------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 L Q + V A+ G V GQ VV D TPFYAE+GGQ GD Sbjct: 464 ----LPQ-----------ARVTALYVDGAAVNAMQPGQTGVVVLDNTPFYAESGGQAGDQ 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +TD K +F H +E G L+ ++ +D Q R + NHSATH Sbjct: 509 GVLKAGNAVFAVTDTTKIQADVFGHQGTLEGGALKVGDAVSAQVDAQRRARTVRNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LGSHV Q GS + D RFD +H+ +T +++ +E+ VN I +N Sbjct: 569 LMHKALREVLGSHVQQKGSLVDADKTRFDFSHNAALTDEQIRRVEEIVNAEILRNDDTHA 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM +DA+ SGA AL G KY D VRV+S+ S LCGGTHV TG+I L IV Sbjct: 629 EIMPFDDAVKSGAMALFGEKYADDVRVLSIGT------SKELCGGTHVHRTGDIGLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 E + AGIRR+EAITG A +L G D +L A+ LK +V R+ ++ ++ R L Sbjct: 683 VEGGVAAGIRRVEAITGDNALHYLQGLDARLNEAAAVLKAQPSELVPRIGQVQDQVRALE 742 Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIM 826 +L K KL + D + D+ + + +++D K L+ MD L+ K++S I+ Sbjct: 743 KELERLKSKLAASQGDELAAQAVDIKGLKVLAAQLDGADVKTLRETMDKLKDKLKSAAIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L +S + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 803 LGAVS-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLP 860 Query: 887 QAIAGVASFL 896 QA+AGV ++ Sbjct: 861 QALAGVGEWV 870 >gi|319427213|gb|ADV55287.1| alanyl-tRNA synthetase [Shewanella putrefaciens 200] Length = 874 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/909 (43%), Positives = 561/909 (61%), Gaps = 58/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRFGWSFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ +Q E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRQASGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ N + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L + ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD LS L D L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDAALSELTGD-TLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 420 EAGFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYTELVG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI Q GE V +G + +V D TPFYAE+GGQ+GD G Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +GI + D QK + H ++ G L + +D + R + +NHS THLLH Sbjct: 511 VANGIEFTVNDTQKYGQATG-HQGVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 744 Query: 775 AKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828 A+ K +L S + D VN ++ +I ++D E L+ + D L++K++S II+L Sbjct: 745 AQLKDKLAAA-ASADLVGDAVVVNGINVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL- 802 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G ++E K +++ V+ DL+ + A +L A ++A+V GG GGGRP MAQ+GG D Sbjct: 803 GTAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDA 860 Query: 888 AIAGVASFL 896 A+A V ++ Sbjct: 861 ALAQVLPWI 869 >gi|16272755|ref|NP_438974.1| alanyl-tRNA synthetase [Haemophilus influenzae Rd KW20] gi|1174496|sp|P43815|SYA_HAEIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|1573826|gb|AAC22473.1| alanyl-tRNA synthetase (alaS) [Haemophilus influenzae Rd KW20] Length = 874 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/914 (42%), Positives = 550/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVR GGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + Sbjct: 61 ATTAQRCVRPGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKDVGVPAERIIRIGDNKGSPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LP+ S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+FK LI + ++ G N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFKTLIAKTAEIVGATDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKESFFYKLVPTLIDVMAEAGKDVKAKQTNVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD LS + KD IL+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLSLLDEALSQV-KDGILSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID +F++ +E QR+RA+A S G+ + ++ G T+F GY + Sbjct: 418 T-IDEQAFDRKMEAQRTRAQAASQFGVDYNSVIRV-------DGETKFEGYTEVES---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + A+ G+ VE +GQ V+ + TPFYAE+GGQ+G Sbjct: 466 -------------------QAKITALFYDGKSVESIEAGQSAVVILENTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G + + D QK + +F H + +G L+ S+ +D + R S+NHSA Sbjct: 507 DSGYLSTQSVTFNVKDTQKYGQ-VFGHIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV Q GS ++ LRFD + IT +L IE VN I N PV Sbjct: 566 THLLHAALRQILGLHVVQKGSLVSDKALRFDFAQPEAITKEQLSEIETLVNQKIRANFPV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ + A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTDIMDIDSAKAKGAMALFGEKYGDKVRVLTM-----GDFSIELCGGIHAKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++E+++ AGIRRIEA+TGQ A L Q L A LK + +++++ ++ +K Sbjct: 681 IITENAVAAGIRRIEAVTGQNAIDWLHNQQRILTQSADLLKSDVNTLAEKIQQLQDKAKK 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K +Q + S KI V+ ++ + +++K L+ ++D L+ ++ SG+ Sbjct: 741 VEKELQGLKEKAAMQAGSYFVKSAVKINGVSVIAQQLDGIETKSLRVMVDDLKNQLGSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I I E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFASILDE-KVNLVVGVTNDLTAKIKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQLEN 858 Query: 885 ADQAIAGVASFLKK 898 QAI +L K Sbjct: 859 VTQAIKVAQDWLNK 872 >gi|292491239|ref|YP_003526678.1| alanyl-tRNA synthetase [Nitrosococcus halophilus Nc4] gi|291579834|gb|ADE14291.1| alanyl-tRNA synthetase [Nitrosococcus halophilus Nc4] Length = 873 Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/911 (43%), Positives = 558/911 (61%), Gaps = 60/911 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + +R FL++F+ GHE++PSS L+P NDPTL+FTN+GMV FK++F G+E Y+ Sbjct: 1 MKSSAELRKIFLDYFRHQGHEIVPSSPLVPANDPTLLFTNAGMVQFKDVFLGRETRAYRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI W LLT+ L Sbjct: 61 AASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYGWALLTEVLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL+ITV+++D+EA +W K G+S ++ R DNFWSM +TGPCGP SEIF+D G Sbjct: 121 PPERLWITVFEDDDEAANIWLKEIGVSPERFARCGAEDNFWSMGDTGPCGPSSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E EG+RY EIWNLVFMQ+++ + LPK S+DTGMGLER+A V+Q Sbjct: 181 SGIAGGPPGSPEQEGDRYTEIWNLVFMQYDRNKEGHLSPLPKPSVDTGMGLERLAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF++LI A ++G++ + + RVI DH+RS +FLI DG+ P+NEGRGY Sbjct: 241 VHDNYDIDLFRNLITAITALSGIQNQ--EPTSLRVIADHIRSCAFLIVDGVQPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG +P L+ L EMG AYPEL QA+ +E L+ E+ERF Sbjct: 299 VLRRIIRRAIRHGHKLGLRDPFFYQLVQPLAVEMGEAYPELPQAQSRVERMLKLEEERFN 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLD+GL +L+ + +L +++ G+ F+LYDT G P+D+ DI RGL +D+ F Sbjct: 359 ETLDQGLKILEQDIENL-SGQVIPGETVFRLYDTFGFPVDLTADIARERGLT-LDMRGFE 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-------TQFIGYDLLRGSKFMKED 472 A+ +QR RARA S K +YG T+FIGY+ LRG Sbjct: 417 HAMAKQRERARAAS-------------RFKIEYGPDLQLDLETEFIGYEHLRG------- 456 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 G + + + + E VE+ +G+K VV D+TPFYAEAGGQ+GD G Sbjct: 457 -------------EGQVTALFRVAETTEAVEQLSAGEKGIVVLDRTPFYAEAGGQVGDQG 503 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G +TD QK+ + H V G LR + ++ +R +NHSATHL Sbjct: 504 TLRAPGGLFNVTDTQKQG-AAYAHLGEVRLGELRVGDLIQAEVERAHRAPTRLNHSATHL 562 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH +L +LG HV+Q GS +T D LRFD +H + + +L+ IE VN I +LPV T+ Sbjct: 563 LHASLRQVLGEHVAQKGSLVTADRLRFDFSHFEALEPEQLRQIERLVNAQIRADLPVETQ 622 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM ++A+ +G AL G KY ++VRV+ + G S LCGGTHV TG I L I++ Sbjct: 623 IMPLQEALDAGVVALFGEKYGEQVRVLRM-----GNFSVELCGGTHVDRTGNIGLFKIIN 677 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--- 769 E+ I AGIRRIEA+TG+ A + + +L+++A LK S+ +V+ ++E + ++ R+ Sbjct: 678 ETGIAAGIRRIEAVTGEAALRWVEENEARLEAVAGLLKASRESVIDKLELLQQQARQQEK 737 Query: 770 -LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +Q + A R DLS +I V ++ I VD K L++ D L+ K+ + I+ Sbjct: 738 EIQSLKA-RLASAGGSDLSAQAQEIQGVKVLAARIDGVDIKTLRNTADQLKSKLATAAIV 796 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G E K ++ VT++ +++ A DL A+ + GG GGGRP MAQ+GG + +K D Sbjct: 797 L-GTVVEGKVVLIAGVTKNAINQIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGKDPDKLD 854 Query: 887 QAIAGVASFLK 897 A+ V +++ Sbjct: 855 AALKSVPEWVE 865 >gi|295677107|ref|YP_003605631.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1002] gi|295436950|gb|ADG16120.1| alanyl-tRNA synthetase [Burkholderia sp. CCGE1002] Length = 874 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/910 (42%), Positives = 542/910 (59%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAADIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ + L + Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTEVYKLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSEI Sbjct: 122 DKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LIQA+ + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQALIQAAGRETGVTDLTNNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL QA+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRLVADLVAQMGDAYPELAQAEKRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ C Sbjct: 360 EERFFETIEHGMSILEAALADLDAKGGKTLDGELAFKLHDTYGFPLDLTADV-CREREVT 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K+ L+ T F GY+ + + +D Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKMAQGLEYSGAKTTFHGYE-----EIVFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ G V++ +GQ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVV-----------------ALYVDGASVQQVQAGQPAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 510 VLANASTRFAVADTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T +++ +E+ VN + N P + R Sbjct: 570 MHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ +DA+ GA AL G KY D VRV+ + + S LCGGTHV+ +G+I IV Sbjct: 630 LMSYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVNRSGDIGFFKIVM 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ + ++ + A+ LK + R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQELEARVNAAAAVLKAQPAELTQRIGQVQDQVKALEK 743 Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K K+ + D ++ V+ ++ + D K L+ +D L+ K++S I+L Sbjct: 744 ELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 804 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 862 ALAGVKGWVE 871 >gi|315181173|gb|ADT88087.1| alanyl-tRNA synthetase [Vibrio furnissii NCTC 11218] Length = 860 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/908 (42%), Positives = 547/908 (60%), Gaps = 69/908 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTEVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY D+EAF +W K G+ AD+I+RI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYQTDDEAFDIWNKQVGIPADRIVRIGDKPGGKAYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGSPEEDGDRFIEIWNNVFMQFNRHADGKMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ V G Y+ + + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAADVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAKGAFFYKLVGPLADVMGSAGEELKKQHAIVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L E L+G+ FKLYDT+G P D+ D+ RG I Sbjct: 362 EEENFGRTLDRGMAILNEALDALSGTE-LDGETVFKLYDTYGFPADLTNDVARERGFT-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F A+EEQR RAR +G + L + GAT+F GY Sbjct: 420 DEAGFEAAMEEQRQRARE------AGHFGTDYNQLIKVEGATEFCGY------------- 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G S+I + V +G+ +G K +V ++TPFYAE+GGQ GD G Sbjct: 461 ---------SATQGESTITEMFV-EGQAAASLSAGDKAIIVLNETPFYAESGGQCGDAGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I HH ++ G+ ++ +D + R +S+NHSATHLL Sbjct: 511 LKTDAGVFHVVDTQKLGNAI-AHHGVMAEGVFAQGDTVHAIVDAKRRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + +GLRFD +H + +++AELK +E VN+ + N + T I Sbjct: 570 HAALRRVLGEHVMQKGSLVRAEGLRFDFSHLEAVSAAELKEVERLVNEQVRTNHRIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A A GA AL G KY+++VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 630 MDIDAAKAKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S I AGIRRIEA+TG+ A +L Q + +S +V ++ + + L + Sbjct: 685 SGIAAGIRRIEAVTGEAALDYLDAQHAQFES--------------KVADMASKAKGLEKE 730 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828 + H K KL K+ D+ + +++++ D+K L+ ++D L+ ++ SGIIML Sbjct: 731 IQHLKDKLAAKESASLTSKVKDIAGVKVLVAQLDGADNKALRGMVDELKNQLGSGIIMLG 790 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + A Sbjct: 791 NVA-DDKVGLIAGVTKDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDAVALPSA 848 Query: 889 IAGVASFL 896 + V +++ Sbjct: 849 LESVDAWI 856 >gi|153835573|ref|ZP_01988240.1| alanyl-tRNA synthetase [Vibrio harveyi HY01] gi|148867838|gb|EDL67069.1| alanyl-tRNA synthetase [Vibrio harveyi HY01] Length = 860 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/912 (43%), Positives = 551/912 (60%), Gaps = 73/912 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R A I Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR + G+ I + T+F GY +G Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGNFGTDYNAAIKVDTQ-----TEFCGYTGTKG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 SS V A+ +G VE +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ---------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCGDAGE 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ++ D QK I HH ++ G+L + +D + R +S+NHSATHLL Sbjct: 511 IRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + DGLRFD +H + +T+AELK +E VN I +N + T + Sbjct: 570 HAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETNV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I SE Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A + Q +EKL A + + + +E +K Sbjct: 685 GGIAAGIRRIEAVTGEGALDAIEAQTAKYEEKLAESAQ-----------KAKSLEKEIQK 733 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826 L K K+ K+ D+N +I+ + D+K L++++D ++ ++ SG+I+ Sbjct: 734 L-----KDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVIL 788 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 789 LANVN-DDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALP 846 Query: 887 QAIAGVASFLKK 898 AI V +L++ Sbjct: 847 AAIQTVQPWLEE 858 >gi|186476371|ref|YP_001857841.1| alanyl-tRNA synthetase [Burkholderia phymatum STM815] gi|205830006|sp|B2JK72|SYA_BURP8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|184192830|gb|ACC70795.1| alanyl-tRNA synthetase [Burkholderia phymatum STM815] Length = 874 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/908 (42%), Positives = 539/908 (59%), Gaps = 55/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y TT Sbjct: 4 AEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRATTA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L + + Sbjct: 64 QRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPKEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPCSEIF+ Sbjct: 124 LWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A V Sbjct: 184 DHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF+ LI+A+ + T + NN + +V+ DH+R+ SFLI DG++P NEG Sbjct: 244 LQHVHSNYEIDLFQALIKAAARETNIDDLSNNSL--KVVADHIRACSFLIVDGVIPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG L+ L +MG AYPEL A+ + LR E+E Sbjct: 302 RGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAQMGGAYPELKDAEQRVTHVLRQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +T++ G+ +L+G L+ L + L+G+VAFKL+DT+G PLD+ D+ RG+ +D Sbjct: 362 RFFETIEHGMSILEGALADLDSKGGKTLDGEVAFKLHDTYGFPLDLTADVCRERGVT-VD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F++A+ QR +ARA K+ L T F GY+ + + +D + Sbjct: 421 EPAFDEAMARQREQARA-------AGKFKMAQGLDYTGAKTTFHGYE-----EIVFDDAR 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+ G V E GQ+ VV D TPFYAE+GGQ+GD G Sbjct: 469 -----------------VTALYVDGASVNEVTKGQQAVVVLDHTPFYAESGGQVGDQGVL 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 IR + D K + HH +E+G L+ + ID R + + NHSATHL+H Sbjct: 512 ANASIRFGVVDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + D RFD H+ P+T +++ +E+ VN + N P + R+M Sbjct: 572 KALREVLGGHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVRVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY D VRV+ + + S LCGGTHV+ TG+I L IV E Sbjct: 632 AYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVNRTGDIGLFKIVMEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AGIRR+EAITG A + D ++ + A+ LK + R+ + ++ + L +L Sbjct: 686 GVAAGIRRVEAITGDNAVRFVQELDARIHAAAAALKAQPSELTQRISMVQDQVKALEKEL 745 Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + DV+ ++ + D K L+ +D L+ K++S I+L Sbjct: 746 GALKSKLASSQGDELASQAIDVSGVQVLAATLEGADVKTLRETVDKLKDKLKSAAIVLAS 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A+ Sbjct: 806 V-EGGKVSLIAGVTADTSKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAAL 863 Query: 890 AGVASFLK 897 AGV +++ Sbjct: 864 AGVKGWVE 871 >gi|303253696|ref|ZP_07339833.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247624|ref|ZP_07529667.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302647421|gb|EFL77640.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855894|gb|EFM88054.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 874 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/904 (42%), Positives = 542/904 (59%), Gaps = 56/904 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S G+ I G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK + +F H + G L + T+D R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 LQ + K Q E + +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAI 889 D A+ Sbjct: 860 DNAL 863 >gi|323492975|ref|ZP_08098113.1| alanyl-tRNA synthetase [Vibrio brasiliensis LMG 20546] gi|323312806|gb|EGA65932.1| alanyl-tRNA synthetase [Vibrio brasiliensis LMG 20546] Length = 860 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/913 (42%), Positives = 552/913 (60%), Gaps = 75/913 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF++W K G+ AD+I+RI +DNFW+M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFEIWNKTVGVPADRIVRIGDKEGGKQYESDNFWTMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK ++DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ + G YE + + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKAAAETIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAKGVFFHKLVGVLAEVMGTAGEELKKQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R A I Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVARERDFA-I 419 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F +A+EEQR RAR A G T K T+F GY +G Sbjct: 420 DEEGFEKAMEEQRQRAREAGQFGTDYNATIKT-------EAETEFCGYTGTQG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S V I +GE E +G K ++ +TPFYAE+GGQ GD G Sbjct: 466 ----------------NSNVAEIFVEGEAAESLSAGDKAIIILGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK I HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 VLKTESGLFKVEDTQKLGNAI-AHHGVLAEGVLAKGDEVEAVVDAERRASISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL T+LG HV+Q GS + P+ LRFD +H + +T AELK +E VN + +N + T Sbjct: 569 LHAALRTVLGEHVTQKGSLVKPENLRFDFSHLEAVTPAELKEVERLVNAQVRRNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 E I AGIRRIEA+TG+ A + Q +EKL A+ + + + +E + Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAIEAQQAKYEEKLAESAT-----------KAKSLEKEIQ 732 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825 KL K K+ K ++N + +I+ + DSK L++++D ++ ++ SG++ Sbjct: 733 KL-----KDKMAAAESANIMGKAQEINGVKVLIAGMEGADSKNLRTMVDDIKNQMGSGVV 787 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 ML ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 788 MLANVN-DGKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVDAL 845 Query: 886 DQAIAGVASFLKK 898 AI V +L++ Sbjct: 846 PAAIQSVQPWLEE 858 >gi|156975767|ref|YP_001446674.1| alanyl-tRNA synthetase [Vibrio harveyi ATCC BAA-1116] gi|205830285|sp|A7MYT5|SYA_VIBHB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|156527361|gb|ABU72447.1| hypothetical protein VIBHAR_03511 [Vibrio harveyi ATCC BAA-1116] Length = 865 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/916 (43%), Positives = 553/916 (60%), Gaps = 76/916 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPFESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E FG+TL+RG+ +L+ L ++ G D ++L+G+ FKLYDT+G P D+ D+ R Sbjct: 362 EEENFGRTLERGMAILNEALDNISSQGTDGKVLDGETVFKLYDTYGFPADLTNDVARERE 421 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A ID F +A+EEQR RAR + G+ I + T+F GY +G Sbjct: 422 FA-IDEEGFEKAMEEQRQRAR-EAGNFGTDYNAAIKVDTQ-----TEFCGYTGTKG---- 470 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 SS V A+ +G VE +G K +V +TPFYAE+GGQ G Sbjct: 471 -------------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCG 511 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + ++ D QK I HH ++ G+L + +D + R +S+NHSA Sbjct: 512 DAGEIRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSA 570 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + DGLRFD +H + +T+AELK +E VN I +N + Sbjct: 571 THLLHAALRQLLGEHVTQKGSLVKADGLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVI 630 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L Sbjct: 631 ETNVMDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFK 685 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWE 765 I SE I AGIRRIEA+TG+ A + Q +EKL A + + + + Sbjct: 686 ITSEGGIAAGIRRIEAVTGEGALDAIEAQAAKYEEKLAESAQ-----------KAKSLEK 734 Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822 E +KL K K+ K+ D+N +I+ + D+K L++++D ++ ++ S Sbjct: 735 EIQKL-----KDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGS 789 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+I+L ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 790 GVILLANVN-DDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDV 847 Query: 883 NKADQAIAGVASFLKK 898 AI V +L++ Sbjct: 848 AALPAAIQTVQPWLEE 863 >gi|90580351|ref|ZP_01236158.1| alanyl-tRNA synthetase [Vibrio angustum S14] gi|90438653|gb|EAS63837.1| alanyl-tRNA synthetase [Vibrio angustum S14] Length = 874 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/905 (42%), Positives = 547/905 (60%), Gaps = 57/905 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +L FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Q+ Sbjct: 8 IRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGLEKRSYTRATTAQR 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT L RL Sbjct: 68 CVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIAYAWEFLTSVLKLPADRLV 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITT--------NDNFWSMAETGPCGPCSEIFFD 178 +TVY+ D+EAF++W K G+ AD+I+RI +DNFW M +TGPCGPC+EIF+D Sbjct: 128 VTVYETDDEAFEIWNKEVGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCTEIFYD 187 Query: 179 QGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ I GG PG+ EE G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+A ++ Sbjct: 188 HGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERIAAIM 247 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 Q +NY+ID+F+ LI+ + +V G + N + RV+ DH+RS ++LI+DG++P+NEGR Sbjct: 248 QGVHSNYEIDIFQTLIKEAAKVIGFEDLSNQSL--RVVADHIRSCAYLISDGVMPSNEGR 305 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + LG L+ L MG+A EL + L+E+ L+ E++ Sbjct: 306 GYVLRRIIRRAVRHGNKLGAQGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLKIEEDN 365 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 FG+TLDRGL +L+ L +L ++L+G+ FKLYDT+G P D+ D+ RG ID Sbjct: 366 FGRTLDRGLTILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFT-IDEDG 423 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+EEQR RAR A + G+ K+ T+F GY Sbjct: 424 FEAAMEEQRQRARDAGNFGVDYNDAIKV-------DAETEFCGY---------------- 460 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 T+G IV A+ + G V+ +G++ VV TPFYAE+GGQ GD+G Sbjct: 461 ------SATDGEGEIV-ALYRDGVAVDSVNAGEEALVVLTNTPFYAESGGQCGDSGILTA 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G+ + D QK I H V G L L ++D R +S+NHSATHL+H A Sbjct: 514 EGVLFNVADTQKFGAAIG-HKGQVAEGTLTVGQKLTASVDSARRAAISLNHSATHLMHAA 572 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG HV+Q GS + DGLRFD ++ + + +L+++E VND I N + T IM+ Sbjct: 573 LRNILGEHVAQKGSLVKADGLRFDFSNLEAVKPEQLRAVETMVNDQIRANHAIETNIMDI 632 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E A A GA AL G KY+D VRV+S+ G S+ LCGG H + TG+I L I+SES I Sbjct: 633 EAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILSESGI 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AGIRRIEA+TG A + +D L A +K +VV +VE + ++L ++ Sbjct: 688 AAGIRRIEAVTGASAIEAMHTEDAMLAKTARLVKSDSASVVSKVEALVSHSKQLEKEIQQ 747 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831 K KL ++ ++N + +I+++ D+K L+ ++D L+ ++ SG+++L +S Sbjct: 748 LKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLLGNVS 807 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K ++ VT+DL+ + A +L L A+ + GG GGGRP MAQ+GG + A+ Sbjct: 808 -DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPAALET 865 Query: 892 VASFL 896 VA +L Sbjct: 866 VAPWL 870 >gi|315125679|ref|YP_004067682.1| alanyl-tRNA synthetase [Pseudoalteromonas sp. SM9913] gi|315014193|gb|ADT67531.1| alanyl-tRNA synthetase [Pseudoalteromonas sp. SM9913] Length = 866 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/904 (44%), Positives = 554/904 (61%), Gaps = 56/904 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF H+++PSSSLIP ND TL+F N+GMV FK++F G E Y T Sbjct: 5 TTAQIRQQFLDFFASKQHQVVPSSSLIPGNDATLLFNNAGMVQFKDVFLGAESRPYTRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ L + Sbjct: 65 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTEVVKLPK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +T+Y +DEEAF W GL D+IIRI T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 EKLLVTIYHDDEEAFGYWANDIGLPEDRIIRIATSDNFWSMGDTGPCGPCSEIFYDHGEH 184 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PG+ EE G+R+IEIWNLVFMQ+ +Q+ LPK S+DTGMGLER++ +LQ Sbjct: 185 IWGGPPGTPEEDGDRFIEIWNLVFMQYNRQSDGTMEPLPKQSVDTGMGLERISAILQGVH 244 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+IDLF+ LI A+ VT + + + RV+ DH+RS +FLI+DG++P+NEGRGYVL Sbjct: 245 SNYEIDLFQGLIAAAASVTNAQDMDDKSL--RVVADHIRSCAFLISDGVMPSNEGRGYVL 302 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG L+ AL +MG AYPEL + + +IE+ LR E+E+FGKT Sbjct: 303 RRIIRRAVRHGNKLGAKGAFFYKLVAALIEQMGQAYPELAKQQEIIEKVLRIEEEQFGKT 362 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RGL +L+ LS L D ++ GD+ FKLYDT+G P D+ D+ R + ID F Sbjct: 363 LERGLAILEESLSDLTGD-VIPGDLVFKLYDTYGFPADLTADVARERQMT-IDHQGFEAC 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + QR A+ + G+ +++ +K+ T F GYD Sbjct: 421 MAVQRKTAQ-QAGKFGADYNDQL---KSDKH--TDFKGYD-------------------- 454 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + S V I GE V GQ+ +V D+TPFYAE+GGQ+GD+G G Sbjct: 455 ---STHYSGTVVEIFAGGEAVSLLEDGQQGIIVLDRTPFYAESGGQIGDSGTITVAGGEF 511 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +T+ K F HH V+ G + + TID R + NH+ATH+LH AL +L Sbjct: 512 VVTNTTKLGNA-FAHHGTVQ-GRIGVNDKVDATIDDARRDSIKKNHTATHILHEALRQLL 569 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HVSQ GS + PD LRFD +H + +T EL+ IE VND I +N + T +M +DA A Sbjct: 570 GEHVSQKGSLVQPDRLRFDFSHFEAVTKQELREIERVVNDEIRRNFALNTELMAIDDAKA 629 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL G KY+D VRVV++ G +S LCGGTHV G+I L IVSES I AG+R Sbjct: 630 KGAMALFGEKYDDEVRVVTI-----GDYSIELCGGTHVERAGDIGLFKIVSESGIAAGVR 684 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+TG A +++ Q+++L +A+ +K +V+ +V + E+ + L+ K+ QL Sbjct: 685 RIEAVTGAEAIAYVSEQEQQLADVAALVKGDNASVLEKVTALLEKSKGLE----KQVAQL 740 Query: 782 NVEDLSC------HKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISK 832 N + S + ++N + +++ V +SK L+ ++D L+ KI SG+I L G++ Sbjct: 741 NDKLASAAGASLLDSVVEINGVKLLVANVEGTESKALRGMVDDLKNKIGSGVIAL-GVAS 799 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ VT+DL + A +L A + GG GGGRP MAQ+GG A+ V Sbjct: 800 GDKVSLIAGVTKDLTGKVKAGELVNHMAGQV-GGKGGGRPDMAQAGGSEPQNLTAALDSV 858 Query: 893 ASFL 896 ++L Sbjct: 859 TAWL 862 >gi|307245509|ref|ZP_07527596.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853568|gb|EFM85786.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 874 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/905 (42%), Positives = 544/905 (60%), Gaps = 58/905 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S G+ I G T FIGYD L Sbjct: 418 T-IDKAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 +G I GI + D QK + +F H + G L + T+D R ++ NHSA Sbjct: 508 SGL-ISTGICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 566 THLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L Sbjct: 626 TIETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 +VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 681 LVSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKR 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K Q E + +KI VN + + V+ K L++++D L+ +++S I Sbjct: 741 TEKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAI 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++ G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 801 VVF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQN 858 Query: 885 ADQAI 889 D A+ Sbjct: 859 LDNAL 863 >gi|303249632|ref|ZP_07335837.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252204|ref|ZP_07534102.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651444|gb|EFL81595.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860348|gb|EFM92363.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 874 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/904 (42%), Positives = 543/904 (60%), Gaps = 56/904 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S G+ I + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGADYNNVI-----KVEGQTDFIGYDNL------- 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 464 ----------------AAQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK + +F H + G L + T+D R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 770 ---LQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 LQ + K Q E + +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAI 889 D A+ Sbjct: 860 DNAL 863 >gi|95928611|ref|ZP_01311358.1| alanyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684] gi|95135401|gb|EAT17053.1| alanyl-tRNA synthetase [Desulfuromonas acetoxidans DSM 684] Length = 880 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/908 (41%), Positives = 551/908 (60%), Gaps = 44/908 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F+++F+K+GH +PSSSLIP NDPTL+FTN+GM FK++F G E Y+ Sbjct: 1 MLTANEIRARFIQYFEKHGHRAVPSSSLIPHNDPTLLFTNAGMNQFKDLFLGAETRDYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ W+ LTKE L Sbjct: 61 ATSAQKCVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKQDAIRFGWEFLTKEMKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 L+++V+++D+EAF +W+ G+ ++I+R+ DNFW+M +TGPCGPCSEI DQG Sbjct: 121 PVEDLWVSVFEDDDEAFNIWRDEIGVREERILRLGEKDNFWAMGDTGPCGPCSEIHIDQG 180 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E C P G + +R++E+WNLVFMQ+E+ LPK SIDTGMGLER+ V+ Sbjct: 181 EEMTCGPDCALGVC-DCDRFLELWNLVFMQYERSADGTLSPLPKPSIDTGMGLERITAVV 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 Q +NYD D + +I EQ+ G Y N V+ RVI DH R+++FLIADG+LP+NE Sbjct: 240 QGVKSNYDTDSLRAIIAHIEQLAGKTYGDNEDADVSMRVIADHSRATAFLIADGVLPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRIMRRA +A++LG+ EP++ + M AYPEL + + + +++E+ Sbjct: 300 GRGYVLRRIMRRAARHAKMLGFDEPVLFKTATFVMESMKDAYPELEERLDYVAKVVKNEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TL GL +L+ + L ++ GD F+LYDT G P+D+ DI+ + + Sbjct: 360 ERFIQTLGNGLRILNEEIDTLKSKGQTVIPGDTVFRLYDTFGFPVDLTADIVEGQNFT-L 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +E+QR +AR + G G ++ L E+ + +F GYD + F Sbjct: 419 DEAGFETCMEQQRQKARENWKGSGEEGIGAVYKQLAEQGMSCEFTGYD--KCDDF----- 471 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+++ G+ VE +G+ VE++ TPFY E+GGQ GD G Sbjct: 472 ----------------GTVLALLKDGQQVESVSAGETVEIITSITPFYGESGGQSGDGGT 515 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +G++ I++ K + VH A ++ G L + L +D + R ++NHSATH+L Sbjct: 516 LTAEGVKATISETLKPLPNLHVHVATIDEGTLSVGQAAELHVDVEQRTACALNHSATHIL 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 L +LG HV Q GS +TPD LRFD H +T E++ +E+ VN I +N V+T + Sbjct: 576 QAVLCEVLGDHVKQAGSQVTPDRLRFDFIHFSALTPEEIQQVEEKVNQRIRENAGVMTDV 635 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN +DA+ +GA AL G KY D VRVV + G S LCGGTHVS+TG I L IV E Sbjct: 636 MNTDDAVKAGATALFGEKYGDSVRVVRM-----GDFSMELCGGTHVSATGNIGLFKIVQE 690 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + I AG+RRIEA+TG A S + Q++ + LA+ +K + R++++ E ++L+ Sbjct: 691 AGIAAGVRRIEAVTGSGALSTVREQEQMIGDLAALVKSDPSQLATRLKKLMEHQKELERQ 750 Query: 774 HAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + +L+ + I +V ++ I +D K+L+ D L+ ++QSG+I+L Sbjct: 751 VSTLEDRLSADRAGNLMDQVQTIDNVKLLAVRIDNLDGKQLREQADKLRDQLQSGVIVLG 810 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G++ + K ++L+ VT+DL + A +L + A+++ GG GGGRP +AQ+GG + + A Sbjct: 811 GVN-DGKVALLVSVTKDLTNTLKAGNLIKPLAEMV-GGRGGGRPDLAQAGGSQPEQLNNA 868 Query: 889 IAGVASFL 896 + A + Sbjct: 869 LEAAAGIV 876 >gi|238799432|ref|ZP_04642859.1| Alanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969] gi|238716719|gb|EEQ08608.1| Alanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969] Length = 875 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/911 (43%), Positives = 562/911 (61%), Gaps = 58/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAYEIWANDVGIPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRDLITAVADVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGSAADELKHQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDEELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ + SL A+QF GYD + Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVHQ------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + GE V+E G++ VV +QTPFY E+GGQ+GDTG Sbjct: 467 ----------------QATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D QK + I H + G LR S+ +D R ++ +NHSATHL Sbjct: 511 ELKNATATFAVADTQKYGQAIG-HLGKLTHGTLRVNHSIDAQVDVTRRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +NLP+ T Sbjct: 570 LHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNLPIQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A GA AL G KY+D+VRV+S+ G S+ LCGG H S TG+I L I+S Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASRTGDIGLFRILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES AGIRRIEA+TG+ A + + Q + L+ +A +K N+ +V + + R Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALVHQQSDLLQDVAHLVKGDTNNLTEKVRAVLDRSKMLER 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +LQ + ++ Q + S K ++ V + + V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKDQQAAQESASLSSSAKLVSGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K S+++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG + Sbjct: 805 A-TTADDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQALP 861 Query: 887 QAIAGVASFLK 897 A+A V ++++ Sbjct: 862 SALASVEAWVE 872 >gi|257465412|ref|ZP_05629783.1| alanyl-tRNA synthetase [Actinobacillus minor 202] gi|257451072|gb|EEV25115.1| alanyl-tRNA synthetase [Actinobacillus minor 202] Length = 874 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/896 (43%), Positives = 544/896 (60%), Gaps = 60/896 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FFQ GH ++ SSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFQSKGHTVVESSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ AD IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKIVGVPADHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ GGLPG+ EE G+R+IE+WN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDKYWGGLPGTPEEDGDRFIEVWNIVFMQFNRQADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ID+F+ LI+ ++ +K N + RVI DH+RS S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYEIDIFQTLIKTIAELLNVKDLDNKSL--RVIADHIRSCSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+NEGRGYVLRRI+RRA+ + +LG E L+P L MG A + Q + I++T Sbjct: 299 APSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLAQVMGHAGEIVAQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+GDVAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGDVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F ++ QR RA+A S G+ K+ G T FIGYD L Sbjct: 418 V-IDEAGFEAEMQAQRERAKASSNFGVDYNNVIKV-------DGKTDFIGYDNLTA---- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + V + G V+ SG+ ++ D+TPFYAE GGQ+G Sbjct: 466 -------------------EATVVGLFSNGNAVDVVKSGENAIIILDKTPFYAEMGGQVG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G + + + D QK + +F H +E G L+ + + + R + +NHSA Sbjct: 507 DSGRISTEFCQFHVVDTQKYGQ-VFGHIGQIEAGELKVGDKVTAEVAAERRHSIQLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG+HV Q GS + +GLRFD + + IT +L++IE VN I +N+ V Sbjct: 566 THLLHSALREVLGTHVMQKGSLVNENGLRFDFSQPEAITKEQLEAIERIVNAKIRENIEV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 V M E+A A GA AL G KY D VRVV D V S LCGGTHV TG+I L Sbjct: 626 VIEEMGIEEAKAKGAMALFGEKYGDVVRVV-----DMSVFSIELCGGTHVKRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I SE ++ AG+RR+EAITG+ A + L + + A LK N+V +++++ ++ ++ Sbjct: 681 ITSEGAVAAGVRRVEAITGEAALAWLHNLQQMTQHSAELLKADSTNLVEKIQQLQDKAKR 740 Query: 770 ----LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + K+ Q DL+ +I VN + + + K L++++D L+ ++ S Sbjct: 741 LEKELQQLKEKQASQAGA-DLAKQAKQINGVNVVVTQLENTEPKVLRTMVDDLKNQLGSA 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 I++L G + K ++++ V+ DL + A +L A + GG GGGRP MA +GG Sbjct: 800 IVVL-GTVADDKVNLIVGVSSDLTTQIKAGELVGEMATYV-GGKGGGRPDMAMAGG 853 >gi|238784094|ref|ZP_04628108.1| Alanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970] gi|238714940|gb|EEQ06938.1| Alanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970] Length = 875 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/913 (43%), Positives = 568/913 (62%), Gaps = 64/913 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAYEIWANDVGIPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 +A VLQ +NY+IDLF+ LI A VTG + ++ RVI DH+RS +FLI+DG++ Sbjct: 244 IAAVLQHVNSNYEIDLFRDLITAVADVTGATDFSSKSL---RVIADHIRSCAFLISDGVI 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + ++E+ L Sbjct: 301 PSNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLIAVMGSAADELKQQQAMVEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 361 KTEEEQFARTLERGLALLDEELNKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F QA+E QR RAR S G G+ + SL A+QF GYD + Sbjct: 420 -VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVHQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V A+ + G+ V+E +G++ VV +QTPFY E+GGQ+GDT Sbjct: 467 -----------------QATVTALFRNGQAVDEIHAGEEAVVVLNQTPFYGESGGQVGDT 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D QK + I H + G LR S+ +D R ++ +NHSATH Sbjct: 510 GELKNATATFVVADTQKYGQAI-GHLGKLTHGTLRVNHSIDAQVDATRRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +NLP+ T Sbjct: 569 LLHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNLPIQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M + A GA AL G KY+D+VRV+S+ G S+ LCGG H S TG+I L I+ Sbjct: 629 EVMELDAAKEKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASRTGDIGLFRIL 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY---- 767 SES AGIRRIEA+TG+ A + L Q + L+ +A +K N+ +V + + Sbjct: 684 SESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKADTHNLADKVRAVLDRSKMLE 743 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGI 824 R+LQ + ++ Q + S K+ VN + ++S++D+ E L++++D L+ ++ S I Sbjct: 744 RELQQLKDQQAAQESASLSSSAKL--VNGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAI 801 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I+L + + K S+++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG + Sbjct: 802 IVLA-TTADDKVSLIVGVTKDLTGKVKAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQ 858 Query: 884 KADQAIAGVASFL 896 A+A V +++ Sbjct: 859 ALPSALASVEAWV 871 >gi|227329399|ref|ZP_03833423.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 875 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/909 (44%), Positives = 554/909 (60%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYARAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPC+ Sbjct: 124 PKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NYDIDLFK LI A + G N + RVI DH+RS +FLIADG++P Sbjct: 244 VSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTDLTNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA + +LG T+ L+ L MG A EL + + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIQVMGPAAEELKKQQSVVEQALK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD + +L K + L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 362 TEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+ QR RAR S G G + E T F GY+ ++ Sbjct: 420 VDEEGFEAAMTAQRQRAREAS---GFGVDYNSLIRVDEN---TPFCGYEK------TQQQ 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ AI G V++ +G + V+ ++TPFY E+GGQ+GD G Sbjct: 468 AKVI-----------------AIYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + D QK + I H + RG LR S+ +D Q R ++ +NHSATHL Sbjct: 511 ELKNAGVSFAVQDTQKYGQAIG-HVGKLTRGTLRVNDSVEANVDSQRRDRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H++ + +++ +ED VN I +NL V T Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQTD 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA A GA AL G KY+D VRV+++ G S LCGGTH S TG+I L I+S Sbjct: 630 VMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES AG+RRIEA TG+ A S L Q + L+ +A LK N+ +V + + R L Sbjct: 685 ESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALEK 744 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 +L K + K +VN + ++++ VD K L++++D L+ ++ S +I+L Sbjct: 745 ELQQFKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G + E + S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 805 -GTAAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALPA 862 Query: 888 AIAGVASFL 896 A+A V S++ Sbjct: 863 ALASVESWV 871 >gi|307254463|ref|ZP_07536300.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258922|ref|ZP_07540653.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862604|gb|EFM94561.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866946|gb|EFM98803.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 874 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/905 (42%), Positives = 545/905 (60%), Gaps = 58/905 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S G+ I + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVI-----KVEGQTDFIGYDNLEA----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 +G I GI + D QK + +F H + G L + T+D R ++ NHSA Sbjct: 508 SGL-ISTGICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 566 THLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L Sbjct: 626 TIETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 +VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 681 LVSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKR 740 Query: 770 ----LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K Q E + +KI VN + + V+ K L++++D L+ +++S I Sbjct: 741 TEKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAI 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++ G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 801 VVF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQN 858 Query: 885 ADQAI 889 D A+ Sbjct: 859 LDNAL 863 >gi|33152493|ref|NP_873846.1| alanyl-tRNA synthetase [Haemophilus ducreyi 35000HP] gi|38372509|sp|Q7VLK0|SYA_HAEDU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33148716|gb|AAP96235.1| alanyl-tRNA synthetase [Haemophilus ducreyi 35000HP] Length = 874 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/905 (42%), Positives = 553/905 (61%), Gaps = 56/905 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSS+L+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFNSKGHTVVPSSALVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--F 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ AW+ LT E Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFAWEFLTSEKWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ ++ IIRI N DNFW+M +TGPCGP Sbjct: 121 HLPKEKLYVTVYETDDEAYDIWHKTVGVPSEHIIRIGDNKGVPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPG++EE G+RYIE+WN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGESFWGGLPGTAEEDGDRYIEVWNIVFMQFNRQADGTLAKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ E T + + + RVI DH+R+ S+LI DG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIK--EVATLLHVADLDNKSLRVIADHIRACSYLIVDGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L MG A L + I++T Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLAKVMGQAGEILTDKQSYIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + +++ L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKTEEEQFARTLERGLALLEEALTKV-ENQTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID SF + QR RA++ S G+ + S+ + T FIGYD Sbjct: 418 V-IDEASFEIEMTAQRERAKSSS-NFGAD-----YNSVIKVEAETAFIGYDCFNA----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + KV+ A+ G+ V++ SG+ VV D+TPFYAE GGQ+GD Sbjct: 466 -EAKVI-----------------ALFSNGQAVDKVQSGESAVVVLDKTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK + +F H V G L + +D R+ ++ NHSAT Sbjct: 508 SGLITTAFCQFAVADTQKYGQ-VFGHIGQVVSGSLAIGDIISAQVDIARRQAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV Q GS ++ + LRFD + S+ ++ A+L+ IE VN I QNL V Sbjct: 567 HLLHSALRQVLGEHVVQKGSLVSENVLRFDFSQSQAVSKAQLEEIERIVNRQIRQNLAVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A G AL G KY D VRVV + S LCGGTHV TGEI L + Sbjct: 627 IETMDIETAKEKGTVALFGEKYGDVVRVVGMTD-----FSIELCGGTHVKHTGEIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769 +SES++ AGIRR+EA+T + A + L Q + + A LK ++V ++ ++ ++ ++ Sbjct: 682 ISESAVAAGIRRVEALTAENAINWLHNQQKIIHQSAELLKTDSLSLVDKIYQLQDKIKRN 741 Query: 770 -LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGII 825 +L H K KL ++ +N ++ +I + ++SK L++++D L+ ++ S I+ Sbjct: 742 EKELQHFKDKLAAQAGAELAKQVVQINGINVVIQKLEGIESKSLRTMVDDLKNQLSSVIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + +S + K ++++ VT+DL ++ NA +L L A+ + GG GGGRP MA +GG Sbjct: 802 VFGSVSAD-KVNLIVGVTKDLSNKVNAGELVGLIAQQV-GGKGGGRPDMAMAGGTEPQHL 859 Query: 886 DQAIA 890 D A+A Sbjct: 860 DTALA 864 >gi|134282822|ref|ZP_01769525.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 305] gi|134245908|gb|EBA45999.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 305] Length = 874 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSEI Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V E +G+ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDRG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + R Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV+ Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K KL + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLPA 861 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 862 ALAGVKGWVE 871 >gi|260549963|ref|ZP_05824178.1| alanyl-tRNA synthetase [Acinetobacter sp. RUH2624] gi|260406955|gb|EEX00433.1| alanyl-tRNA synthetase [Acinetobacter sp. RUH2624] Length = 883 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/914 (44%), Positives = 538/914 (58%), Gaps = 60/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 9 AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT E L + Sbjct: 69 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 129 DRLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GGLPGS EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 189 FFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL E Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARRDVIEATLIRE 366 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L KD+ + G FKLYDT+G P D+ DI RG ID Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 424 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + S+ + G TQF GY Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAVDYNSIVKVEGETQFDGY-------------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 I+ T G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 465 -------IN-TTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D KK+ G FVH IV G L+ ++ + R + NHSATHLLH Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKANQNVEAIVKADIREATARNHSATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I N PV T ++ Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTPVTTELL 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I SE Sbjct: 635 DIEAAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E LQ Sbjct: 695 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSALQ-- 752 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K+ QLN DL IA + + VD+K L+++ D+++ K+++ + Sbjct: 753 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868 Query: 885 ADQAIAGVASFLKK 898 Q IA + ++L++ Sbjct: 869 FGQVIAALPAWLEQ 882 >gi|190149963|ref|YP_001968488.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263291|ref|ZP_07544909.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|205829969|sp|B3H177|SYA_ACTP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|189915094|gb|ACE61346.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871353|gb|EFN03079.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 874 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/904 (42%), Positives = 543/904 (60%), Gaps = 56/904 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S G+ I + G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGADYNNVI-----KVEGQTDFIGYDNL------- 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 464 ----------------AAQATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK + +F H + G L + T+D R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 LQ + K Q E + +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAI 889 D A+ Sbjct: 860 DNAL 863 >gi|53719621|ref|YP_108607.1| alanyl-tRNA synthetase [Burkholderia pseudomallei K96243] gi|76812235|ref|YP_333216.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b] gi|121601160|ref|YP_992755.1| alanyl-tRNA synthetase [Burkholderia mallei SAVP1] gi|124386422|ref|YP_001026453.1| alanyl-tRNA synthetase [Burkholderia mallei NCTC 10229] gi|126449388|ref|YP_001080272.1| alanyl-tRNA synthetase [Burkholderia mallei NCTC 10247] gi|126451905|ref|YP_001065931.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1106a] gi|167001586|ref|ZP_02267381.1| alanine--tRNA ligase [Burkholderia mallei PRL-20] gi|167738941|ref|ZP_02411715.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 14] gi|167816161|ref|ZP_02447841.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 91] gi|167824533|ref|ZP_02456004.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 9] gi|167846068|ref|ZP_02471576.1| alanyl-tRNA synthetase [Burkholderia pseudomallei B7210] gi|167894639|ref|ZP_02482041.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 7894] gi|167903047|ref|ZP_02490252.1| alanyl-tRNA synthetase [Burkholderia pseudomallei NCTC 13177] gi|167911280|ref|ZP_02498371.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 112] gi|167919300|ref|ZP_02506391.1| alanyl-tRNA synthetase [Burkholderia pseudomallei BCC215] gi|217423601|ref|ZP_03455102.1| alanine--tRNA ligase [Burkholderia pseudomallei 576] gi|226192959|ref|ZP_03788571.1| alanine--tRNA ligase [Burkholderia pseudomallei Pakistan 9] gi|242315165|ref|ZP_04814181.1| alanine--tRNA ligase [Burkholderia pseudomallei 1106b] gi|254180068|ref|ZP_04886667.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1655] gi|254188523|ref|ZP_04895034.1| alanyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237] gi|254198350|ref|ZP_04904772.1| alanyl-tRNA synthetase [Burkholderia pseudomallei S13] gi|254261778|ref|ZP_04952832.1| alanine--tRNA ligase [Burkholderia pseudomallei 1710a] gi|254297905|ref|ZP_04965358.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 406e] gi|254358720|ref|ZP_04974993.1| alanyl-tRNA synthetase [Burkholderia mallei 2002721280] gi|59798504|sp|Q63TF9|SYA_BURPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123599400|sp|Q3JT87|SYA_BURP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830001|sp|A3MJ36|SYA_BURM7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830002|sp|A2S3D4|SYA_BURM9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830003|sp|A1V3F2|SYA_BURMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830004|sp|A3NUB0|SYA_BURP0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52210035|emb|CAH36008.1| alanyl-tRNA synthetase [Burkholderia pseudomallei K96243] gi|76581688|gb|ABA51163.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1710b] gi|121229970|gb|ABM52488.1| alanyl-tRNA synthetase [Burkholderia mallei SAVP1] gi|124294442|gb|ABN03711.1| alanine--tRNA ligase [Burkholderia mallei NCTC 10229] gi|126225547|gb|ABN89087.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1106a] gi|126242258|gb|ABO05351.1| alanine--tRNA ligase [Burkholderia mallei NCTC 10247] gi|148027847|gb|EDK85868.1| alanyl-tRNA synthetase [Burkholderia mallei 2002721280] gi|157807006|gb|EDO84176.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 406e] gi|157936202|gb|EDO91872.1| alanyl-tRNA synthetase [Burkholderia pseudomallei Pasteur 52237] gi|169655091|gb|EDS87784.1| alanyl-tRNA synthetase [Burkholderia pseudomallei S13] gi|184210608|gb|EDU07651.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 1655] gi|217393459|gb|EEC33480.1| alanine--tRNA ligase [Burkholderia pseudomallei 576] gi|225935049|gb|EEH31024.1| alanine--tRNA ligase [Burkholderia pseudomallei Pakistan 9] gi|242138404|gb|EES24806.1| alanine--tRNA ligase [Burkholderia pseudomallei 1106b] gi|243062691|gb|EES44877.1| alanine--tRNA ligase [Burkholderia mallei PRL-20] gi|254220467|gb|EET09851.1| alanine--tRNA ligase [Burkholderia pseudomallei 1710a] Length = 874 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSEI Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V E +G+ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + R Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV+ Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K KL + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLPA 861 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 862 ALAGVKGWVE 871 >gi|330446966|ref|ZP_08310617.1| alanyl-tRNA synthetase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491157|dbj|GAA05114.1| alanyl-tRNA synthetase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 874 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/909 (42%), Positives = 547/909 (60%), Gaps = 57/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR +L FF+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G EK Y T Sbjct: 4 STDEIRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDVFLGLEKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIAYAWEFLTSVLKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITT--------NDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+I+RI +DNFW M +TGPCGPC+E Sbjct: 124 DRLVVTVYETDDEAFDIWNKEVGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PG+ EE G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A ++Q +NY+ID+F+ LI+ + +V G N + RV+ DH+RS ++LI+DG++P+ Sbjct: 244 AAIMQGVHSNYEIDIFQTLIKEAAKVIGFDDLSNQSL--RVVADHIRSCAYLISDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + L+E+ L+ Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLKI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E++ FG+TLDRGL +L+ L +L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEDNFGRTLDRGLTILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F A+EEQR RAR A + G+ K+ T+F GY Sbjct: 420 DEEGFEAAMEEQRQRARDAGNFGVDYNDAIKV-------DAETEFCGY------------ 460 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 T+G IV A+ + G V+ +G+ VV TPFYAE+GGQ GD+G Sbjct: 461 ----------SATDGEGEIV-ALYRDGVAVDSVNAGEDALVVLTNTPFYAESGGQCGDSG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G+ + D QK I H V G L L ++D R +S+NHSATHL Sbjct: 510 ILTAEGVLFNVADTQKFGAAIG-HKGQVAEGTLTVGQKLTASVDSARRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL ILG HV+Q GS + DGLRFD ++ + + +L+++E VND I N + T Sbjct: 569 MHAALRNILGEHVAQKGSLVKADGLRFDFSNLEAVKPEQLRAVEIMVNDQIRDNHAIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A A GA AL G KY+D VRV+S+ G S+ LCGG H + TG+I L I+S Sbjct: 629 IMDIEAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES I AGIRRIEA+TG A + +D L A +K +VV +VE + ++L Sbjct: 684 ESGIAAGIRRIEAVTGAAAIEAMHTEDAMLAKTARLVKSDSASVVSKVEALVSHSKQLEK 743 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827 ++ K KL ++ ++N + +I+++ D+K L+ ++D L+ ++ SG+++L Sbjct: 744 EIQQLKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 +S + K ++ VT+DL+ + A +L L A+ + GG GGGRP MAQ+GG + Sbjct: 804 GNVS-DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPA 861 Query: 888 AIAGVASFL 896 A+ VA +L Sbjct: 862 ALETVAPWL 870 >gi|330831302|ref|YP_004394254.1| alanyl-tRNA synthetase [Aeromonas veronii B565] gi|328806438|gb|AEB51637.1| Alanyl-tRNA synthetase [Aeromonas veronii B565] Length = 874 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/911 (41%), Positives = 563/911 (61%), Gaps = 57/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR FLE+F+ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STSEIRAAFLEYFRSQGHQVVSSSSLVPHNDPTLLFTNAGMNQFKDVFLGADKRAYNRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LT+ L + Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWGFLTEVLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EAF +W+K G+ AD+I+RI N DNFW+M +TGPCGPC+EI Sbjct: 124 DRLLVTVYATDDEAFDIWEKEVGVPADRIVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS EE G+R+IEIWN+VFMQF +Q LP+ S+DTGMGLER++ Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNVVFMQFNRQADGTMEPLPRPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + ++ G N + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQALIKKAAEIVGTTDLSNQSL--RVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + R LG T+ L L +M ELI L+E LR E Sbjct: 302 EGRGYVLRRIIRRAVRHGRKLGATDVFFYKLAAELAVQMKDVAAELIAQLPLVERVLRIE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TLDRGL+LL+ L++LG +++ G+V FKLYDT+G P D+ D++ R + GID Sbjct: 362 EEQFVRTLDRGLLLLEDALANLGDAKVIPGEVVFKLYDTYGFPADLTADVVREREI-GID 420 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +E+QR+RA+ A S G+ K+ F T F GY Sbjct: 421 EEGFKAEMEKQRARAKEASSFGVNYNEMLKLDFE-------TPFTGY------------- 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K L ++ V I K + E V ++G + +V ++TPFYAE+GGQ+GD+G Sbjct: 461 KTLTERTR------VVGIYKGV----EEVSGLIAGDEAVIVLEETPFYAESGGQIGDSGT 510 Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + DGI +TD K + I +H +E G L + +D R+ +++NHS THL Sbjct: 511 LKVDDGI-FAVTDTLKAGKAI-IHKGYMELGTLEKGAEVEAVVDGDRRQAIALNHSVTHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + + +RFD +H + +T A ++ +E+ VN+ I N + T+ Sbjct: 569 LHAALRQALGEHVTQKGSLVGAERMRFDFSHFEGLTMATIRRVEELVNNQIRANHEITTQ 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A ++GA AL G KY D VRVV + G +S+ LCGGTH TG+I I++ Sbjct: 629 LMDLEAAKSAGAMALFGEKYEDDVRVVRM-----GDYSTELCGGTHAKRTGDIGFFKIIA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES I AG+RRIEA+TG+ A + E+++ A+ +K Q + +V ++ ++ + + Sbjct: 684 ESGIAAGVRRIEAVTGKAAIDFMHQVGEQIEEAAALVKGDQFCIADKVRQMLDKAKMMER 743 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827 +L K KL + ++ ++N +++ + D K L+ ++D L+ +++SG+++L Sbjct: 744 ELEQLKAKLAAQAGNDLLGQVIEINGQKVLVAALEGADPKSLRGMLDELKNQMKSGVVLL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K +++ VT DL + A +L L A+ + GG GGGRP MAQ+GG Sbjct: 804 ATCA-DGKVNLIAGVTNDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTQPEAVPA 861 Query: 888 AIAGVASFLKK 898 A+ V S+L++ Sbjct: 862 ALQSVHSWLEE 872 >gi|149911059|ref|ZP_01899687.1| alanyl-tRNA synthetase [Moritella sp. PE36] gi|149805885|gb|EDM65873.1| alanyl-tRNA synthetase [Moritella sp. PE36] Length = 873 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/917 (43%), Positives = 546/917 (59%), Gaps = 74/917 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL++F GH SSSL+P NDPTL+FTN+GM FK++F G E+ Y T Sbjct: 4 STAEIRNAFLDYFASKGHNKGTSSSLVPANDPTLLFTNAGMNQFKDVFLGAEQRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT + + Sbjct: 64 TSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAILFAWEFLTVVLKIPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITT--------NDNFWSMAETGPCGPCSE 174 +L +TVY+ D EAF W G+ DKIIRI +DNFWSM +TGPCGPCSE Sbjct: 124 EKLLVTVYESDNEAFSFWANKVGVPEDKIIRIGDKSPEKKFESDNFWSMGDTGPCGPCSE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWNLVFMQF +Q LPK S+DTGMGLER+ Sbjct: 184 IFYDHGEDIWGGVPGSPEEDGDRFIEIWNLVFMQFNRQADGTMEELPKPSVDTGMGLERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 A ++Q +NY+ID+F+ LI+ ++ G E ++ RVI DH+R+ SFLI+DG++P Sbjct: 244 AAIMQNVHSNYEIDIFQSLIKHVAELIGTTDLEHKSL---RVIADHIRACSFLISDGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG P L+ + MG +L++ + ++E+ L Sbjct: 301 SNEGRGYVLRRIIRRAVRHGNKLGAKGPFFNKLVAKMVELMGDISDDLVKQQAIVEKILL 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+FGKTL+RGL +LD LS L +++ GDV FKLYDT+G P D+ DI R L Sbjct: 361 IEEEQFGKTLERGLNILDNELSQL-DGKVVPGDVVFKLYDTYGFPSDLTADIARERELT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F A+E QR+RAR S G+ E + K T+F+GY L D Sbjct: 419 IDEDGFKTAMEAQRNRARQGS-NFGTDYNEMLKIDAK-----TEFLGYQTL------TSD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +++ A+++ VE GQ+ +V ++TPFYAEAGGQ GD G Sbjct: 467 AQIV-----------------ALIKDNAEVELLNDGQEGAIVLNKTPFYAEAGGQSGDQG 509 Query: 533 C-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 IGD + +TD KKA +H V G++ ++ +D R+ + +NHS TH Sbjct: 510 VIKIGDAV-FTVTDT-KKAGNATIHFGSVS-GVIEVNSQVIADVDVSRRKAIGLNHSVTH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L H AL ++G +V Q GS + P+ LRFD +H + +T A+L +E VN I N VVT Sbjct: 567 LAHAALRKVVGDNVQQKGSLVLPERLRFDFSHFEGVTPAQLIEVERLVNAQIRANHEVVT 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ + A +GA AL G KY+D VRVV + G S LCGGTHV TG+I I+ Sbjct: 627 EVMDIDAAREAGAMALFGEKYDDEVRVVRM-----GDFSIELCGGTHVKRTGDIGFFKIL 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I AG+RR+EA+TG A +++ K++ AS +K Q VV +V ++ + R L+ Sbjct: 682 SESGIAAGVRRVEAVTGDSALAYVHDLVAKMQETASLVKADQNTVVAKVSQVLDRNRSLE 741 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHI------------ISEVDSKELKSVMDALQKK 819 K +LNV+ S A+ N + + + D K L+S MD L+ K Sbjct: 742 ----KEVEKLNVQVASA---ANANLIDQVQVINGVKVLVANLKGADPKSLRSSMDELKNK 794 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +QSGII+L GI E K +++ VT+DL+ + A +L A V GG GGGRP MAQ+GG Sbjct: 795 LQSGIIVL-GIPGEGKVNLITGVTKDLIGKVKAGELVSFLA-VQVGGKGGGRPDMAQAGG 852 Query: 880 PNGNKADQAIAGVASFL 896 N A+ V +L Sbjct: 853 SNPEALAAALESVTPWL 869 >gi|167719939|ref|ZP_02403175.1| alanyl-tRNA synthetase [Burkholderia pseudomallei DM98] Length = 874 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSEI Sbjct: 122 DKLWVTVYHDDDEAYGIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V E +G+ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + R Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV+ Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K KL + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLPA 861 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 862 ALAGVKGWVE 871 >gi|261854984|ref|YP_003262267.1| alanyl-tRNA synthetase [Halothiobacillus neapolitanus c2] gi|261835453|gb|ACX95220.1| alanyl-tRNA synthetase [Halothiobacillus neapolitanus c2] Length = 872 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/909 (43%), Positives = 550/909 (60%), Gaps = 52/909 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +RT FLEFF + GHE++PSSSLIP +DPTL+FTN+GMV FK+ F G E Sbjct: 2 MKTTAELRTAFLEFFNQRGHEIVPSSSLIPAHDPTLLFTNAGMVQFKDAFLGLEHRANPR 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ WD LT+ L Sbjct: 62 AVSCQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKPEAIRYGWDFLTQVLKL 121 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT-----NDNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ +W+ GL +K++RI +DNFW M +TGPCGPC+EI Sbjct: 122 PADRLLVTVYQTDDEAYAIWRDEIGLPEEKVLRIGDKPSGGSDNFWQMGDTGPCGPCTEI 181 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G IPGG PGS+ E+G+R+IEIWN+VFMQ+++ + LPK S+DTGMG+ER+A Sbjct: 182 FYDHGAHIPGGPPGSADEDGDRFIEIWNIVFMQYDRTVDGQLHPLPKPSVDTGMGIERLA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NYDID+F+HLI A++ VTG + ++ + +V+ DH+RS +FLI DG+ P N Sbjct: 242 AILQGGHSNYDIDIFRHLITAAQAVTGAADQKSSSL--KVLADHIRSCAFLIVDGVRPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGR YVLRRI+RRA + LG EP L+ L MG AY EL A+ + LR E Sbjct: 300 EGRDYVLRRIIRRAARHGHKLGVDEPFFYRLVAPLVEVMGPAYSELANAQAEVARVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +L+ L+ + + G+V FKLYDTHG P D+ DI RGL +D Sbjct: 360 EERFLQTLASGMQVLETELADMTPGGTIPGEVVFKLYDTHGFPFDLTADIARERGLV-LD 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ E+R+++RA A+QF + + ++ + Sbjct: 419 ESGFEHAMAERRAQSRA----------------------ASQFA-----QQTHVLEIETP 451 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + D G + AIV GE ++ +GQ +V D TPFYAE+GGQ+GDTG Sbjct: 452 TCFEGYAQDKAQGA---LIAIVHDGEQIDVLEAGQSGALVLDHTPFYAESGGQVGDTGVI 508 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G R +TD QK+ F+H V G + ID + R + +NHSATHLLH Sbjct: 509 TTAGGRFVVTDTQKQGAN-FLHLGEVIEGRVALGDVADAQIDVERRHSIRLNHSATHLLH 567 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + + LRFD + S+PIT A+L+ IE VN I +N V TR M Sbjct: 568 AALRQVLGTHVHQKGSRVGAESLRFDFSQSEPITDAQLREIERIVNAQIRENHSVETREM 627 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A A+GA AL G KY D VRVV++ G S LCGGTH G+I L+ IVSES Sbjct: 628 PVDEARAAGAMALFGEKYGDVVRVVTM-----GPFSMELCGGTHARRGGDIGLIKIVSES 682 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TG A + L D+ L +AS ++ S+ + V RV ++ E R+L+ Sbjct: 683 GVASGVRRIEAVTGASALAVLEQTDDALAEIASMVRGSRQDAVSRVSQVIERARQLEREL 742 Query: 775 AKRKLQLNVE---DLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K + E DL +A DVN++ + + D L+ +D L+ K+ + +ML Sbjct: 743 AEIKAKQAAEAGGDLLTTAVAMGDVNYLVAELPDADVNTLRDTVDQLKNKLGTSAVMLAS 802 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + ++ K ++ V++DL R A D ++A+++ GG GGGRP MAQ+GGP+ + A+ Sbjct: 803 V-EDGKVRLIAGVSKDLTGRIKAGDWVNVAAQIV-GGKGGGRPDMAQAGGPDSAQLPAAM 860 Query: 890 AGVASFLKK 898 +++KK Sbjct: 861 EAARAWMKK 869 >gi|126441822|ref|YP_001058678.1| alanyl-tRNA synthetase [Burkholderia pseudomallei 668] gi|205830005|sp|A3N8K7|SYA_BURP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126221315|gb|ABN84821.1| alanine--tRNA ligase [Burkholderia pseudomallei 668] Length = 874 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSEI Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V E +G+ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + R Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV+ Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K +L + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 744 ELGALKSRLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLPA 861 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 862 ALAGVKGWVE 871 >gi|258623803|ref|ZP_05718760.1| alanyl-tRNA synthetase [Vibrio mimicus VM603] gi|258583926|gb|EEW08718.1| alanyl-tRNA synthetase [Vibrio mimicus VM603] Length = 858 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/907 (43%), Positives = 545/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 2 STDEVRRAFLSFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT L + Sbjct: 62 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTDVLQLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 122 ERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKKFDSDNFWQMGDTGPCGPCTE 181 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 182 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 241 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 242 SAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--RVVADHIRSCAFLIVDGVMPS 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + L L+ L MG+A EL + + L+E+ LR Sbjct: 300 NEGRGYVLRRIIRRAVRHGNKLSAQGAFFHKLVGPLAEVMGTAGVELKKQQALVEKVLRI 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G D+ D+ RG + I Sbjct: 360 EEENFGRTLDRGMSILNEALDQL-SGQVLDGETVFKLYDTYGFLADLTNDVARERGFS-I 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+EEQR RAR +G + +L + T+F GY RG Sbjct: 418 DETGFEQAMEEQRQRARE------AGQFGTDYNALIKSATNTEFCGYTASRG-------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+V+ I +G V +G K +V D TPFYAE+GGQ GDTG Sbjct: 464 ---------------QSVVREIFVEGAEVSALSAGDKAIIVLDNTPFYAESGGQCGDTGV 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + D K I HH ++ +G+L + +D Q R +S+NHSATHLL Sbjct: 509 LKTEAGVFHVEDTHKLGNAI-AHHGVLAQGVLAKGDQVDAIVDEQRRAAISLNHSATHLL 567 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+ E+K +E VN I +N + T I Sbjct: 568 HAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTATEIKEVERLVNQEIRRNHSIETNI 627 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN ++A A GA AL G KY+D+VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 628 MNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A ++ Q D K+ +A+ K+ + +EI + K Sbjct: 683 GGIAAGIRRIEAVTGEGALDYIEAQQAQHDAKVVEMAAKAKLLE-------KEIQQLKDK 735 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L AK L + +IA VN + ++ D+K L+ ++D L+ ++ SGIIML Sbjct: 736 LA---AKESAGLINQ---VKQIAGVNVLVAELNGADNKALRGMVDDLKNQLGSGIIMLGN 789 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I+ E K ++ VT DL ++ A +L + A + GG GGGRP MAQ+GG + + A+ Sbjct: 790 IA-EGKVGLIAGVTSDLTNKVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAHALPSAL 847 Query: 890 AGVASFL 896 V +++ Sbjct: 848 ESVDAWI 854 >gi|238786914|ref|ZP_04630715.1| Alanyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641] gi|238725282|gb|EEQ16921.1| Alanyl-tRNA synthetase [Yersinia frederiksenii ATCC 33641] Length = 875 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/911 (43%), Positives = 558/911 (61%), Gaps = 58/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTGEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+++W G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAYEIWANEVGVPRERIIRIGDNKGAAFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF++LI A VTG + + RVI DH+R+ +FLI+DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRNLISAVADVTGATDLSSKSL--RVIADHIRACAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL Q + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGSAADELKQQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L L D L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDEELDKLTGD-TLDGETAFRLYDTYGFPIDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ I A+QF GYD + Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGADYNNLIRVD-----SASQFSGYDHVHQ------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + GE V+E G++ VV +QTPFY E+GGQ+GD G Sbjct: 467 ----------------QATVTALFRNGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D QK + I H + G LR S+ +D R ++ +NHSATHL Sbjct: 511 ELKNATATFAVADTQKYGQAIG-HLGQLTHGTLRVNHSVDAQVDVVRRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 570 LHAALRKTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDIVNEQIRRNMPVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M E A GA AL G KY+D+VRV+++ G S+ LCGG H + TG+I L I+S Sbjct: 630 VMELEAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGIHANRTGDIGLFRILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----R 768 ES AGIRRIEA+TG+ A + L Q + L +A +K N+ +V + + R Sbjct: 685 ESGTAAGIRRIEAVTGEGAIALLHQQSDLLADVAHLVKGDTNNLADKVRAVLDRSKMLER 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +LQ + ++ Q + S K+ V + + V+ K L++++D L+ ++ S II+L Sbjct: 745 ELQQLKDQQAAQESASLSSNAKLVKGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K S+++ VT+DL + A +L A ++ +V GG GGGRP MAQ+GG + Sbjct: 805 -ATTADDKVSLIVGVTKDLTSKVKAGELIADIAQQV--GGKGGGRPDMAQAGGSDVQALP 861 Query: 887 QAIAGVASFLK 897 A+A V ++++ Sbjct: 862 SALASVEAWVE 872 >gi|330966776|gb|EGH67036.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 874 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/892 (44%), Positives = 537/892 (60%), Gaps = 59/892 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS G +N + +V+ DH+RS FLIADG+LP++ Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASANAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSS 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL TEMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVTEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +++ L+ L K ++ G++ FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKIIEQDLAEL-KGTVVPGEIVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ + G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKDGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + R ++D K G F+HH +V G L + + + + R +NHSATHLL Sbjct: 510 LLAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGVQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PVVT Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFESIKPEQLRALEDIVNAEIRKNTPVVTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDISLFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E K ++ VT+DL + A DL + +A + GG GGGRP MAQ GG Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAATAV-GGKGGGRPDMAQGGG 853 >gi|268593120|ref|ZP_06127341.1| alanine--tRNA ligase [Providencia rettgeri DSM 1131] gi|291311391|gb|EFE51844.1| alanine--tRNA ligase [Providencia rettgeri DSM 1131] Length = 875 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/914 (42%), Positives = 560/914 (61%), Gaps = 64/914 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHTKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT E F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTSEEWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY D+EA+ +W K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYATDDEAYDIWNKEIGIPVERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NY+ID+F+ LI A+ + TG N + RVI DH+RS +FL++DG++P Sbjct: 244 ISAVLQHVNSNYEIDIFRDLIAAAAKATGATDLENKSL--RVIADHIRSCAFLVSDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG + L+ L MG A EL + + ++E+ L+ Sbjct: 302 SNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIKVMGPAADELARQQAMVEKVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L K + L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLQLLDEELASL-KGDTLDGEAAFRLYDTYGFPIDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E+QR RAR S G G+ I + ++ Q+ Sbjct: 420 VDEEGFERAMEDQRRRARESS-GFGADYNSLIKVDKRSEFSGYQY--------------- 463 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + + A+ + G+ V+ +G++ V+ D+T FYAE+GGQ+GDTG Sbjct: 464 -------------DEQQATITALYKDGQPVDSLNAGEEGLVILDKTAFYAESGGQVGDTG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D ++TD QK + I H VE G L + +D R + +NHSATHL Sbjct: 511 YLNNDNASFKVTDTQKYGQAIG-HIGKVEAGSLVVNHRITAVVDSARRDAIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HVSQ GS + LRFD +H + +T +L+ +ED VN I +N + T Sbjct: 570 LHAALRQVLGDHVSQKGSLVNDKYLRFDFSHFEAMTQEQLRQVEDIVNAQIRKNSEIETE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A A GA AL G KY +RVRV+S+ G S LCGGTH TG+I L I+S Sbjct: 630 LMDLEGAKAKGAMALFGEKYEERVRVLSM-----GDFSIELCGGTHARRTGDIGLFRILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA TG A + Q E+L ++A +K ++V +V+ ++ R+L+ Sbjct: 685 ESGTAAGVRRIEATTGSMAIESIHNQSEQLSAIAHLVKGDINSLVEKVKAALDKSRQLE- 743 Query: 773 IHAKRKLQLNVEDLS------CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823 K +QL + S K DV + +++++ D K L++++D L+ +++S Sbjct: 744 ---KEIVQLKDQQASQESASLSSKAKDVKGIKLLVTQLADTDPKLLRTMVDDLKNQLKSA 800 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L S + K S+++ VT DL + A DL A + GG GGGRP MAQ+GG + + Sbjct: 801 IIVLSTTSGD-KVSMIVGVTNDLTAKVKAGDLISYIASQV-GGKGGGRPDMAQAGGTDVS 858 Query: 884 KADQAIAGVASFLK 897 A+A V +++ Sbjct: 859 ALPAAMASVEEWVE 872 >gi|237811944|ref|YP_002896395.1| alanine--tRNA ligase [Burkholderia pseudomallei MSHR346] gi|237502943|gb|ACQ95261.1| alanine--tRNA ligase [Burkholderia pseudomallei MSHR346] Length = 874 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/910 (42%), Positives = 545/910 (59%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSEI Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V E +G+ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDRG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + R Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV+ Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K +L + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 744 ELGALKSRLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAKLPA 861 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 862 ALAGVKGWVE 871 >gi|254230499|ref|ZP_04923872.1| alanyl-tRNA synthetase [Vibrio sp. Ex25] gi|262393294|ref|YP_003285148.1| alanyl-tRNA synthetase [Vibrio sp. Ex25] gi|151936971|gb|EDN55856.1| alanyl-tRNA synthetase [Vibrio sp. Ex25] gi|262336888|gb|ACY50683.1| alanyl-tRNA synthetase [Vibrio sp. Ex25] Length = 860 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/908 (42%), Positives = 553/908 (60%), Gaps = 65/908 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+I+RI +DNFW M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFYKLVGVLAEVMGTAGEELKRQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L +L ++L+G+ FKLYDT+G P D+ D+ R A I Sbjct: 362 EEENFGRTLERGMVILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR + G+ I + T+F GY +G Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGQFGTDYNAAIKVDTQ-----TEFCGYTGTKG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 SS V A+ +G V+ +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ---------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAGE 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ++ D QK I HH ++ G+L + +D + R +S+NHSATHLL Sbjct: 511 IRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + D LRFD +H + +T+AELK +E VN I +N + T + Sbjct: 570 HAALRQVLGEHVTQKGSLVKADSLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETNV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I SE Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AGIRRIEA+TG+ A + Q+ K + K+++ + + + +E +KL Sbjct: 685 SGIAAGIRRIEAVTGEAALDAIEAQNAKYEE-----KLAES--AQKAKALEKEVQKL--- 734 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGI 830 K K+ K +VN +++ + DSK L++++D ++ ++ SG+++L + Sbjct: 735 --KDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLLANV 792 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + K ++ VT+DL + A DL ++ A+ + GG GGGRP MAQ+GG + + +AI Sbjct: 793 TGD-KVGLIAGVTKDLTGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVSALPEAIK 850 Query: 891 GVASFLKK 898 V +L++ Sbjct: 851 TVQPWLEE 858 >gi|149190613|ref|ZP_01868882.1| alanyl-tRNA synthetase [Vibrio shilonii AK1] gi|148835611|gb|EDL52579.1| alanyl-tRNA synthetase [Vibrio shilonii AK1] Length = 861 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/910 (43%), Positives = 542/910 (59%), Gaps = 68/910 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P +DPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVDSSSLVPHDDPTLLFTNAGMNQFKDCFLGLEKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF++W K G+ AD+I+RI +DNFW M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFEIWNKQIGVPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHVDGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G + N + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAAEVIGYQDLSNQSL--RVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L + MGSA EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGTLASVMGSAGEELKKQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ +L L +LG +++L+G+ FKLYDT+G P D+ D+ R I Sbjct: 362 EEENFGRTLERGMTILTEALDNLGDEKVLDGETVFKLYDTYGFPADLTNDVAREREFT-I 420 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F +A+E QR RAR A G K+ T+F GY GS Sbjct: 421 DEEGFEKAMEAQRQRAREAGQFGTDYNAAIKVDTD-------TEFCGYTGTEGS------ 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V A+ +G V+ +G K VV +QTPFYAE+GGQ GD G Sbjct: 468 -----------------SSVAAMFVEGAEVDALSAGDKAIVVLEQTPFYAESGGQCGDAG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK I HH + G+L + +D Q R +S+NHSATHL Sbjct: 511 VLKTAAGLFKVEDTQKLGNAI-AHHGELVEGVLAKGDEVDAIVDAQRRAAISLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD +H + +T AE+K +E VN I N + T Sbjct: 570 LHAALRQVLGEHVTQKGSLVKPDNLRFDFSHLEAMTKAEIKEVERLVNAQIRTNHVIETN 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 630 VMDIESAKAKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 E I AGIRRIEA+TG+ A + Q +EKL AS K + +EI + Sbjct: 685 EGGIAAGIRRIEAVTGEAALDAIEAQASQYEEKLTDAASKAKSLE-------KEIQQLKD 737 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 KL + + + +IA + + DSK L+++MD + ++ SGI + Sbjct: 738 KLAAVESANIMG------KVEEIAGTQVLVAALEGADSKNLRTMMDNAKNQMGSGIAFIA 791 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K ++ VT+DL + A DL ++ A+ +GG GGG RP MAQ+GG + +A Sbjct: 792 NVA-DGKIGLIAGVTKDLTGKVKAGDLVKMVAEQVGGKGGG-RPDMAQAGGSDVEALPEA 849 Query: 889 IAGVASFLKK 898 + + S+L++ Sbjct: 850 LKSIRSWLEE 859 >gi|325983477|ref|YP_004295879.1| alanyl-tRNA synthetase [Nitrosomonas sp. AL212] gi|325532996|gb|ADZ27717.1| alanyl-tRNA synthetase [Nitrosomonas sp. AL212] Length = 865 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/909 (42%), Positives = 555/909 (61%), Gaps = 66/909 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FLEFF+ GH ++ SS L+P NDPTL+FTN+GMV FK+IF GQ+K Y + Sbjct: 4 SEIRQKFLEFFESQGHTVVSSSPLVPGNDPTLLFTNAGMVQFKDIFLGQDKRPYVRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AWD LT ++ + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAILFAWDFLTHTLNIPHEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TVY ED+EA +W G+ +I+RI T DNFW M +TGPCGPCSEIF+D G + Sbjct: 124 LWVTVYAEDDEAAGIWLNEVGVEPSRIVRIATMDNFWQMGDTGPCGPCSEIFYDHGADVQ 183 Query: 185 GGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS++ +G+RYIEIWNLVFMQ+ + + LPK S+DTGMGLER++ V+Q +N Sbjct: 184 GGPPGSADADGDRYIEIWNLVFMQYNRDSAGVLHPLPKPSVDTGMGLERISAVMQHVHSN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YDIDLF+ LI+A+ +VT +N + +VI DH+R+ SFLIADG++P +EGRGYVLRR Sbjct: 244 YDIDLFQSLIKAAARVTNTSNLNDNSL--KVIADHIRACSFLIADGVIPGSEGRGYVLRR 301 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG +P L+ L MG AYPEL AK + L E+ERF +TL+ Sbjct: 302 IIRRAIRHGYKLGQKQPFFHQLVEDLDQVMGQAYPELTAAKARVAAVLLQEEERFAETLE 361 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ +L+ LS +IL+G+ AF+LYDT G P+D+ DI RG+ +D F QA+ Sbjct: 362 NGMQILETALSQ--NIQILDGETAFRLYDTFGFPIDLTADIARERGIT-VDYAGFEQAMA 418 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKE--KYGATQ--FIGYDLLRGSKFMKEDRKVLCQK 479 QR +ARA S F+L+E +Y +Q F GY+ L + + ++L Sbjct: 419 RQREQARAASK-----------FTLQEGIEYSGSQTTFYGYETL------QHEGQIL--- 458 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 A+ +QG V+ +G + VV DQTPFYAE+GGQ+GD G + Sbjct: 459 --------------ALYKQGSAVDSIEAGDEAVVVLDQTPFYAESGGQVGDCGELLAANG 504 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++TD QK G+F H + G L + ++ ++ QNR ++ NHSATHLLH AL Sbjct: 505 IFEVTDTQKIQAGVFGHKGKLHSGRLMIKDTVHAQVNAQNRISIANNHSATHLLHAALRE 564 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + + RFD +H+ P+T+ ++++IE VND I N V M +DA Sbjct: 565 VLGTHVTQKGSLVDANRTRFDFSHNVPLTADDIRAIERLVNDQIRNNCIVEAATMKYDDA 624 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 I GA AL G KY+D VRV+ + G S+ LCGGTHV G+I L IV+ES + AG Sbjct: 625 IKRGAMALFGEKYSDVVRVIGM-----GEFSTELCGGTHVPQVGQIGLFKIVAESGVAAG 679 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRR+EA+TG+ A ++ ++ +L +A LK + V ++ +I + R + A+ K Sbjct: 680 IRRVEAVTGKAAIDYVQQREAQLLEIAQTLKANPQEVTQKIAQIIDNVRHTERELARLKT 739 Query: 780 QL----------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 +L +D++ K+ VN + D+K L+ +D L+ K+++ I+L Sbjct: 740 KLASSQGADLASQAQDVNGVKVLAVN-----LENADAKTLRETLDQLKDKLKTCTIVLST 794 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K +++ V+ DL DR A +L A+ + GG GGGR MAQ+GG + A+ Sbjct: 795 VA-DGKVTLIAGVSADLTDRIKAGELVNFVAQQV-GGKGGGRADMAQAGGTQPEQLPGAL 852 Query: 890 AGVASFLKK 898 GV ++++ Sbjct: 853 GGVKDWVER 861 >gi|303257717|ref|ZP_07343729.1| alanine--tRNA ligase [Burkholderiales bacterium 1_1_47] gi|331000999|ref|ZP_08324635.1| alanine--tRNA ligase [Parasutterella excrementihominis YIT 11859] gi|302859687|gb|EFL82766.1| alanine--tRNA ligase [Burkholderiales bacterium 1_1_47] gi|329569774|gb|EGG51538.1| alanine--tRNA ligase [Parasutterella excrementihominis YIT 11859] Length = 875 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/895 (42%), Positives = 545/895 (60%), Gaps = 58/895 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR+TFL+F + GH ++ SS ++P +DPTL+FTN+GM FK+++ G +K Y Sbjct: 1 MFTASEIRSTFLKFMESKGHTIVASSPVVPGDDPTLLFTNAGMNQFKDVYLGFDKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT+ F L Sbjct: 61 ATTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKNAWELLTEHFKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 +L++TVY ED+EA+ +W K G+ AD+I+RI N DNFW M +TGPCGPCS Sbjct: 121 PPEKLWVTVYAEDDEAYNIWNKEVGIPADRIVRIGDNKGARFASDNFWMMGDTGPCGPCS 180 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G + GG PGS E+G+RY+EIWNLVFMQF + K LP+ S+DTGMGLER Sbjct: 181 EIFYDHGPSVAGGPPGSPDEDGDRYMEIWNLVFMQFNRDEKGVMHKLPRPSVDTGMGLER 240 Query: 233 MATVLQEKTNNYDIDLFKHLIQA---SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289 ++ VLQ +NY+IDLF++L++A + G + N + +VI DH+R+ +F+IADG Sbjct: 241 ISAVLQGVHSNYEIDLFQNLMKAVIDEVKAAGAEDVDPNSPSVKVIADHIRACTFIIADG 300 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 ++P NEGR YVLRRI RR M + LG + +L+ A+ EMG YPE+ I+E Sbjct: 301 VVPGNEGRSYVLRRIARRGMRHGFKLGARKLFFSNLVKAVAKEMGDQYPEIRNPH--IQE 358 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 LR E+ RF +TL +GL +L+ L+ K IL GDVAFKL+DT+G P+D+ D+ C Sbjct: 359 VLRQEEVRFSQTLSKGLDILNEALASGTK--ILGGDVAFKLHDTYGFPVDLTADV-CREK 415 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F+ +E+QR +ARA K+ L+ + T+F+GYD L Sbjct: 416 NVSVDFEGFDALMEKQREQARAKG-------KFKMAQGLEYEGKPTEFLGYDTLTVQA-- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 C+ V+AI + GE V++A +G +V VVFD+TPFYAE+GGQ+G Sbjct: 467 -------CR-------------VEAIYKDGEPVKDAEAGDEVVVVFDRTPFYAESGGQMG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G L++ D K +F H V G ++ +D +NR + NHS Sbjct: 507 DKGTFKNKTTILKVDDTFKIKANVFGHMCYVAEGEVKVGDLFSAQVDEENREATARNHSV 566 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H AL +LG+HV Q GS + D RFD H+ P+T ++ +ED VN I +N P Sbjct: 567 THLMHKALREVLGAHVQQRGSMVNGDRTRFDFVHTSPMTREQINEVEDIVNKEILRNAPT 626 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 TR+M ++A + A L G KY + VRV+++ S LCGGTHV TG+I + Sbjct: 627 QTRVMPIDEAKKTNAVMLFGEKYGENVRVLNIG------SSCELCGGTHVQRTGDIGMFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I+SES I AG+RR+EA+TG A + Q+E ++ +A LK VV +V + E ++ Sbjct: 681 IISESGISAGVRRVEAVTGMAALHYAQNQEEIIREVAEELKAPALEVVSKVVDTVEHLKR 740 Query: 770 LQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGI 824 + L K K + DVN ++ +++E +++KEL++ +D L+ +++SG+ Sbjct: 741 TEKDLNALKVKFAQAGAAHMASQAQDVNGVAVLVTEMKGIETKELRNSVDGLKDQLKSGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 I+L+ S++ KAS + VT+DL+ + A D+ + A+ L GG GGGRP AQ GG Sbjct: 801 IVLIK-SEDGKASAAVGVTKDLVGKIKAGDVMKFVAEQL-GGKGGGRPDFAQGGG 853 >gi|254507377|ref|ZP_05119512.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 16] gi|219549633|gb|EED26623.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 16] Length = 860 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/909 (42%), Positives = 550/909 (60%), Gaps = 67/909 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+I+RI +DNFW+M +TGPCGPC+E Sbjct: 124 ERLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK ++DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G + N + RVI DH+RS SFLIADG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKAAAEVVGCEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAKGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F +A+EEQR RAR A G T K T+F GY +G Sbjct: 420 DEAGFEKAMEEQRQRAREAGQFGTDYNATIKT-------EAETEFCGYTGTQG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V I +GE+ E +G K ++ +TPFYAE+GGQ GD G Sbjct: 466 ----------------KSNVAEIFVEGEVAESLSAGDKAIIILGETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK I HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 VLKTESGLFKVEDTQKLGNAI-AHHGVLAEGVLAKGDEVEAIVDAERRASISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + P+ LRFD +H + +T ELK +E VN + +N + T Sbjct: 569 LHAALRQVLGEHVTQKGSLVKPENLRFDFSHLEAVTPTELKEVERLVNAQVRRNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 VMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + ++++ K ++ +Q + + + +E +KL Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAI--EEQQAKYEEKLVESAQ-----KAKSLEKEIQKL-- 734 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829 K K+ K+ ++N +I+ + D+K L++++D ++ ++ SG+I+L Sbjct: 735 ---KDKMAAAESANIMGKVQEINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVILLAN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I+ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + +AI Sbjct: 792 INGD-KIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPEAI 849 Query: 890 AGVASFLKK 898 V +L++ Sbjct: 850 KTVQPWLEE 858 >gi|167836924|ref|ZP_02463807.1| alanyl-tRNA synthetase [Burkholderia thailandensis MSMB43] Length = 854 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/891 (43%), Positives = 540/891 (60%), Gaps = 55/891 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y TT Sbjct: 3 AAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 63 AQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTAVYKLPAD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSEIF Sbjct: 123 KLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS +E G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPQEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGPFFHRLVADLVAEMGAAYPELKEAEPRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALADLEAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA G T L+ T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA--AGKFRATQ-----GLEYTGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ +G V E +G+ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G+L+ + ID R + + NHSATHL+ Sbjct: 511 LANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDVVRGEIDAGRRARTARNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV Q GS + D RFD H+ P+T E++ +ED VN+ + N P + R+ Sbjct: 571 HKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEDIVNEQVLANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV+E Sbjct: 631 MPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVAE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEKE 744 Query: 772 LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 745 LAALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 805 AVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGG 853 >gi|152988514|ref|YP_001349956.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PA7] gi|205830183|sp|A6VA71|SYA_PSEA7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|150963672|gb|ABR85697.1| alanyl-tRNA synthetase [Pseudomonas aeruginosa PA7] Length = 874 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/912 (44%), Positives = 556/912 (60%), Gaps = 61/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVMHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L++AS + G ++ + +V+ DH+RS SFLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQNLLKASAEAIGCA--NDDAPSLKVVADHIRSCSFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL Q + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKTE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L + ++ G+V FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-QGSVIPGNVVFKLYDTYGFPVDLTNDIARERELT-ID 419 Query: 415 IISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RARA S G+ + SL + G T+F+GY + Sbjct: 420 EDGFEREMEAQRERARASSAFGMD-------YNSLVKVDGETRFLGYQGV---------- 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +G IV A+ + G+ VE G++ VV DQTPFYAE+GGQ+GD+G Sbjct: 463 ------------SGAGQIV-ALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQVGDSGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+R + D KA G +HH +V G L ++ +D R+ ++NHSATHLL Sbjct: 510 LEAAGVRFDVRDT-TKAGGAHLHHGVVAEGGLSVGAAVKAEVDASVRQATALNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +LK++ED VN I +N V T Sbjct: 569 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKALEDIVNAEIRRNTEVETEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A A GA AL G KY D+VRV+S+ GG S LCGGTHVS TG+I L I SE Sbjct: 629 TDIDTAKAKGAMALFGEKYGDQVRVLSM----GGDFSVELCGGTHVSRTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AG+RRIEA+TG A ++L G +E+LK A +K S+ N++ ++ + E R L + Sbjct: 685 GGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAAGLVKGSRDNLLDKLGALLERNRSLEKE 744 Query: 772 LIHAKRKLQLNV-EDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K K +DLS I ++ + +D K L +++D L+ K+ +I+L Sbjct: 745 LEQLKAKAASAAGDDLSAAAVDIKGAKVLAARLDGLDGKALLALVDQLKNKLGRAVILLG 804 Query: 829 GISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G E V++V VT+DL + A +L + A GG GGGRP MAQ GG + K D Sbjct: 805 G---ELDGKVVLVAGVTQDLTGQLKAGELMK-QAAAAVGGKGGGRPDMAQGGGTDAAKLD 860 Query: 887 QAIAGVASFLKK 898 +A+A F+++ Sbjct: 861 EALALAQRFVEQ 872 >gi|307261112|ref|ZP_07542790.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869194|gb|EFN00993.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 874 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/904 (42%), Positives = 541/904 (59%), Gaps = 56/904 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NE RGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNESRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S G+ I G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK + +F H + G L + T+D R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVDATRRVAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 LQ + K Q E + +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAI 889 D A+ Sbjct: 860 DNAL 863 >gi|294860514|ref|ZP_06798283.1| alanyl-tRNA synthetase [Acinetobacter sp. 6013150] Length = 883 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/914 (44%), Positives = 537/914 (58%), Gaps = 60/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 9 AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT E L + Sbjct: 69 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 129 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GGLPGS EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 189 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL E Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 366 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L KD+ + G FKLYDT+G P D+ DI RG ID Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 424 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + ++ + G TQF GY Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 T G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 465 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D KK+ G FVH IV G L+T ++ + R + NHSATHLLH Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I +N V T ++ Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAKIIENTAVTTELL 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I SE Sbjct: 635 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E LQ Sbjct: 695 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSALQ-- 752 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K+ QLN DL IA + + VD+K L+++ D+++ K+++ + Sbjct: 753 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868 Query: 885 ADQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 869 FGQVMAALPAWLEQ 882 >gi|307249853|ref|ZP_07531828.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858107|gb|EFM90188.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 874 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/904 (42%), Positives = 541/904 (59%), Gaps = 56/904 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVTDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S G+ I G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK + +F H + G L + T+ R ++ NHSAT Sbjct: 508 SGLISTEICNFTVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKVKRT 741 Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 LQ + K Q E + +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAI 889 D A+ Sbjct: 860 DNAL 863 >gi|227114946|ref|ZP_03828602.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 875 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/909 (44%), Positives = 558/909 (61%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPC+ Sbjct: 124 PKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NYDIDLFK LI+A + G N + RVI DH+RS +FLIADG++P Sbjct: 244 VSAVLQHVNSNYDIDLFKTLIEAVAKAVGTTDLTNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA + +LG T+ L+ L MG A EL + + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIQVMGPAAEELKKQQSVVEQALK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD + +L K + L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 362 TEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+ QR RAR S G G + E T F GY+ ++ Sbjct: 420 VDEEGFEAAMTAQRQRAREAS---GFGVDYNSLIRVDEN---TPFCGYEK------TQQQ 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ AI G V++ +G + V+ ++TPFY E+GGQ+GD G Sbjct: 468 AKVI-----------------AIYHNGTAVDQIAAGDEAVVILNETPFYGESGGQVGDQG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + D QK + I H + +G LR S+ +D Q R ++ +NHSATHL Sbjct: 511 ELKNAGVSFAVQDTQKYGQAIG-HVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H++ + +++ +ED VN I +NL V T Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQTD 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA A GA AL G KY+D VRV+++ G S LCGGTH S TG+I L I+S Sbjct: 630 VMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA TG+ A S L Q + L+ +A LK N+ +V + + R L+ Sbjct: 685 ESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ S K +VN + ++++ VD K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G + E + S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 805 -GTAAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALPA 862 Query: 888 AIAGVASFL 896 A+A V S++ Sbjct: 863 ALASVESWV 871 >gi|285017964|ref|YP_003375675.1| alanyl-tRNA synthetase (alanine--tRNA ligase) protein [Xanthomonas albilineans GPE PC73] gi|283473182|emb|CBA15688.1| probable alanyl-trna synthetase (alanine--trna ligase) protein [Xanthomonas albilineans] Length = 883 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 554/910 (60%), Gaps = 51/910 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FLEFF+ GH ++PS+ LIP NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLEFFKGKGHAIVPSAPLIPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ LW+ + G+ ++I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYHTDDEAYGLWRDMVGVPEERIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FYDHGAHIAGGPPGSPEEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI+ + ++T N + RVI DH+R+ +FLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTATTDLENKSL--RVIADHIRACAFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG + L+P L MG AYPEL+ A+ ++ L++E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQGFFSKLVPTLVALMGEAYPELVAAQDIVLRALQAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + + ++ G+ AF+LYDT+G PLD+ QDI R L +D Sbjct: 366 EERFAETLDAGMKIFEDVAAK-AQGGVIAGEDAFRLYDTYGFPLDLTQDIARERALC-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+EEQR RAR + G G ++ L T F+GYD L+ Sbjct: 424 EQGFETAMEEQRRRAR-EAGKFGGGV--QLPADLVATLAPTLFLGYDSLQADGLR----- 475 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++ G V+ A +G V ++ D+TPFYAE+GGQ+GD G Sbjct: 476 -----------------VVALLKDGRPVQSAQAGDAVIILTDKTPFYAESGGQVGDIGIL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + G R +TD QK A H + G L+ L +D + RR +NHSATHLLH Sbjct: 519 LQGGTRCAVTDTQKFAGQFHGHVGTLIEGTLKIGDVLAGQVDAERRRATILNHSATHLLH 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PI + EL IE VN + N V M Sbjct: 579 AALREVLGTHVHQKGSLVAPDRLRFDFSHFQPIAAKELALIERKVNQQVRANHAVEVHQM 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY +RVRV+ + G +S+ LCGGTHV+ TG+I L + SE Sbjct: 639 GMQEALDFGAMALFGEKYGERVRVLKM-----GDYSTELCGGTHVTRTGDIGLFKVTSEG 693 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TGQ A ++ ++ L A + S ++V ++ ++ ++Y++L+ Sbjct: 694 GVSAGVRRIEAVTGQGALDYVSAEEAMLHEAAELVGGSANDMVDKIRQLGDKYKRLEREM 753 Query: 775 AKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L DL S + V ++ + D+K L+ MD L++++ +I+L G Sbjct: 754 EALKAKLASSATADLAGSAVDVGGVKVLAVRLEGFDAKALREAMDRLKQQLGESVIVLAG 813 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 S E K +++ V + R A + L+ +++++ G GGGRP +AQ GG +G A Sbjct: 814 AS-EGKVALVSGVNGSPMGRVKAGELLSHIASQI--SGKGGGRPDLAQGGGEDGPALVHA 870 Query: 889 IAGVASFLKK 898 +AGV ++K+ Sbjct: 871 LAGVTEWVKQ 880 >gi|205830244|sp|A1RHG5|SYA_SHESW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830245|sp|A4Y931|SYA_SHEPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/909 (42%), Positives = 559/909 (61%), Gaps = 58/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI W LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFGWSFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ + E LPK S+DTGMG+ER+A Sbjct: 184 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ N + RVI DH+RS +FL+ADG++P+N Sbjct: 244 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L + ++++E+ L++E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD LS L D L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 362 EEQFARTLERGLGILDAALSELTGD-TLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 420 EAGFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYTELVG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI Q GE V +G + +V D TPFYAE+GGQ+GD G Sbjct: 465 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +GI + D QK + H ++ G L + +D + R + +NHS THLLH Sbjct: 511 VANGIEFTVNDTQKYGQATG-HQGVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + M Sbjct: 570 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKKVEELVNTQIRRNHELKVAEM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 630 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 685 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 744 Query: 775 AKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828 A+ K +L S + D VN ++ +I ++D E L+ + D L++K++S II+L Sbjct: 745 AQLKDKLAAA-ASADLVGDAVVVNGVNVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL- 802 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G ++E K +++ V+ DL+ + A +L A ++A+V GG GGGRP MAQ+GG D Sbjct: 803 GTAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDA 860 Query: 888 AIAGVASFL 896 A+A V ++ Sbjct: 861 ALAQVLPWI 869 >gi|165976064|ref|YP_001651657.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|205829970|sp|B0BNS8|SYA_ACTPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|165876165|gb|ABY69213.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 874 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/904 (42%), Positives = 541/904 (59%), Gaps = 56/904 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S G+ I G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK + +F H + G L + T+ R ++ NHSAT Sbjct: 508 SGLISTEICNFTVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 LQ + K Q E + +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAI 889 D A+ Sbjct: 860 DNAL 863 >gi|54310165|ref|YP_131185.1| alanyl-tRNA synthetase [Photobacterium profundum SS9] gi|46914606|emb|CAG21383.1| putative alanyl-tRNA synthetase [Photobacterium profundum SS9] Length = 906 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/904 (43%), Positives = 543/904 (60%), Gaps = 56/904 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Q+ Sbjct: 41 IRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRATTAQR 100 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L Q RL Sbjct: 101 CVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLPQDRLL 160 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179 +T+Y+ D+EAF +W K G+ AD+I+RI N DNFW M +TGPCGPCSEIF+D Sbjct: 161 VTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCSEIFYDH 220 Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GE I GG PG+ EE G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+A ++Q Sbjct: 221 GEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERIAAIMQ 280 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NY+ID+F+ LI+ S +V G YE + + RV+ DH+RS +FLI DG++P+NEGRG Sbjct: 281 GVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPSNEGRG 338 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LG + L+ L MG+A EL + + L+E+ L+ E++ F Sbjct: 339 YVLRRIIRRAVRHGNKLGASGAFFYKLVGPLAEIMGTAGDELKKRQALVEKILKIEEDNF 398 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 G+TLDRGL +L+ L +L E L+G+ FKLYDT+G P D+ D+ R ID F Sbjct: 399 GRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-IDEEGF 456 Query: 419 NQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 N A+E QR RAR A G+ + K+ + T+F GY Sbjct: 457 NNAMEAQRQRAREAGKFGVDYNESIKVDVN-------TEFCGY----------------- 492 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 T SSIV A+ + GE V+ ++G+ ++ D TPFYAE+GGQ GD G + Sbjct: 493 -----TGTAAQSSIV-ALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGVLTAE 546 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++D QK I H + +G L L +D R +++NHSATHLLH AL Sbjct: 547 NTVFNVSDTQKFGAAI-GHQGSLVQGALNVGDKLEAQVDVVRRTAITLNHSATHLLHSAL 605 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV+Q GS + PD LRFD ++ + + +L+ IE VN+ I N + T IM+ E Sbjct: 606 RNLLGEHVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNIMDIE 665 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL G KY+D VRV+S+ G S+ LCGG H +TG+I L I SE I Sbjct: 666 SAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSEGGIA 720 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHA 775 AGIRRIEA+TG A L Q+ L AS +K +V +V + ++L+ + Sbjct: 721 AGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKDIQQL 780 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISK 832 + KL + ++N + +I+++ D+K L+ ++D ++ K+ SGI++L +S Sbjct: 781 QDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLGNVSG 840 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + K +++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + A+ V Sbjct: 841 D-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALESV 898 Query: 893 ASFL 896 +L Sbjct: 899 TPWL 902 >gi|169796616|ref|YP_001714409.1| alanyl-tRNA synthetase [Acinetobacter baumannii AYE] gi|205829964|sp|B0VAI3|SYA_ACIBY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830054|sp|A3M3W2|SYA_ACIBT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830056|sp|B2HWK7|SYA_ACIBC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169149543|emb|CAM87432.1| alanyl-tRNA synthetase [Acinetobacter baumannii AYE] gi|193076886|gb|ABO11606.2| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978] Length = 878 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT E L + Sbjct: 64 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 124 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GGLPGS EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 244 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L KD+ + G FKLYDT+G P D+ DI RG ID Sbjct: 362 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + ++ + G TQF GY Sbjct: 420 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 459 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 T G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 460 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D KK+ G FVH IV G L+T ++ + R + NHSATHLLH Sbjct: 511 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I N V T ++ Sbjct: 570 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTTELL 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I SE Sbjct: 630 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 689 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E LQ Sbjct: 690 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSALQ-- 747 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K+ QLN DL IA + + VD+K L+++ D+++ K+++ + Sbjct: 748 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 805 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 806 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 863 Query: 885 ADQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 864 FGQVMAALPAWLEQ 877 >gi|59798539|sp|Q6LMU3|SYA_PHOPR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 873 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/904 (43%), Positives = 543/904 (60%), Gaps = 56/904 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Q+ Sbjct: 8 IRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRATTAQR 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L Q RL Sbjct: 68 CVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLPQDRLL 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179 +T+Y+ D+EAF +W K G+ AD+I+RI N DNFW M +TGPCGPCSEIF+D Sbjct: 128 VTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCSEIFYDH 187 Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GE I GG PG+ EE G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+A ++Q Sbjct: 188 GEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERIAAIMQ 247 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NY+ID+F+ LI+ S +V G YE + + RV+ DH+RS +FLI DG++P+NEGRG Sbjct: 248 GVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPSNEGRG 305 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LG + L+ L MG+A EL + + L+E+ L+ E++ F Sbjct: 306 YVLRRIIRRAVRHGNKLGASGAFFYKLVGPLAEIMGTAGDELKKRQALVEKILKIEEDNF 365 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 G+TLDRGL +L+ L +L E L+G+ FKLYDT+G P D+ D+ R ID F Sbjct: 366 GRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-IDEEGF 423 Query: 419 NQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 N A+E QR RAR A G+ + K+ + T+F GY Sbjct: 424 NNAMEAQRQRAREAGKFGVDYNESIKVDVN-------TEFCGY----------------- 459 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 T SSIV A+ + GE V+ ++G+ ++ D TPFYAE+GGQ GD G + Sbjct: 460 -----TGTAAQSSIV-ALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGVLTAE 513 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++D QK I H + +G L L +D R +++NHSATHLLH AL Sbjct: 514 NTVFNVSDTQKFGAAIG-HQGSLVQGALNVGDKLEAQVDVVRRTAITLNHSATHLLHSAL 572 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV+Q GS + PD LRFD ++ + + +L+ IE VN+ I N + T IM+ E Sbjct: 573 RNLLGEHVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNIMDIE 632 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL G KY+D VRV+S+ G S+ LCGG H +TG+I L I SE I Sbjct: 633 SAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSEGGIA 687 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHA 775 AGIRRIEA+TG A L Q+ L AS +K +V +V + ++L+ + Sbjct: 688 AGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKDIQQL 747 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISK 832 + KL + ++N + +I+++ D+K L+ ++D ++ K+ SGI++L +S Sbjct: 748 QDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLGNVSG 807 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + K +++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + A+ V Sbjct: 808 D-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAALESV 865 Query: 893 ASFL 896 +L Sbjct: 866 TPWL 869 >gi|307256675|ref|ZP_07538454.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864723|gb|EFM96627.1| Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 874 Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/904 (42%), Positives = 541/904 (59%), Gaps = 56/904 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S G+ I G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQTPFYAE GGQ+GD Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTPFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK + +F H + G L + T+ R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRKNIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 LQ + K Q E + +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAI 889 D A+ Sbjct: 860 DNAL 863 >gi|184157474|ref|YP_001845813.1| alanyl-tRNA synthetase [Acinetobacter baumannii ACICU] gi|213156272|ref|YP_002318692.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB0057] gi|215484078|ref|YP_002326303.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB307-0294] gi|294840176|ref|ZP_06784859.1| alanyl-tRNA synthetase [Acinetobacter sp. 6013113] gi|294842075|ref|ZP_06786758.1| alanyl-tRNA synthetase [Acinetobacter sp. 6014059] gi|301346311|ref|ZP_07227052.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB056] gi|301510214|ref|ZP_07235451.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB058] gi|301596473|ref|ZP_07241481.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB059] gi|183209068|gb|ACC56466.1| Alanyl-tRNA synthetase [Acinetobacter baumannii ACICU] gi|213055432|gb|ACJ40334.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB0057] gi|213985935|gb|ACJ56234.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB307-0294] gi|322507789|gb|ADX03243.1| alaS [Acinetobacter baumannii 1656-2] gi|323517389|gb|ADX91770.1| alanyl-tRNA synthetase [Acinetobacter baumannii TCDC-AB0715] Length = 883 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 9 AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT E L + Sbjct: 69 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 129 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GGLPGS EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 189 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL E Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 366 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L KD+ + G FKLYDT+G P D+ DI RG ID Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 424 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + ++ + G TQF GY Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 T G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 465 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D KK+ G FVH IV G L+T ++ + R + NHSATHLLH Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I N V T ++ Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTTELL 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I SE Sbjct: 635 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E LQ Sbjct: 695 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSALQ-- 752 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K+ QLN DL IA + + VD+K L+++ D+++ K+++ + Sbjct: 753 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868 Query: 885 ADQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 869 FGQVMAALPAWLEQ 882 >gi|27364961|ref|NP_760489.1| alanyl-tRNA synthetase [Vibrio vulnificus CMCP6] gi|29611879|sp|Q8DC49|SYA_VIBVU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|27361107|gb|AAO10016.1| alanyl-tRNA synthetase [Vibrio vulnificus CMCP6] Length = 860 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/907 (43%), Positives = 546/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W + G+ AD+IIRI +DNFW+M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ ++ G + N + RVI DH+RS SFLIADG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEIVGCEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEAMGSAADELKKQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVAREREFT-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR + G+ KI + ++F GY Sbjct: 420 DEAGFEKAMEEQRQRAR-EAGQFGTDYNAKIKVDAQ-----SEFCGY------------- 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ +GE +G K V+ +TPFYAE+GGQ GD+G Sbjct: 461 ----------TSTQERSDVVALFVEGEETATLSAGDKAIVILQETPFYAESGGQCGDSGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + Q+ D QK I HH ++ G+L + +D + R +S+NHSATHLL Sbjct: 511 LKTESGLFQVEDTQKLGNAI-AHHGVLVEGVLAKGDQVTAIVDAERRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AELK +E VN I +N + T I Sbjct: 570 HAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHAIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 630 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A + Q +EKL+ A+ K + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEAALEAIDAQARKFEEKLQDAANKAKSLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L + N+ D +IA V + + D+K L+ ++D L+ ++ SGIIML Sbjct: 738 L-----ASQASANLID-QVKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSAL 849 Query: 890 AGVASFL 896 A V +++ Sbjct: 850 ASVDAWI 856 >gi|89075063|ref|ZP_01161504.1| alanyl-tRNA synthetase [Photobacterium sp. SKA34] gi|89049150|gb|EAR54715.1| alanyl-tRNA synthetase [Photobacterium sp. SKA34] Length = 874 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/905 (43%), Positives = 545/905 (60%), Gaps = 57/905 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +L FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Q+ Sbjct: 8 IRRAYLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGLEKRSYTRATTAQR 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT L RL Sbjct: 68 CVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIGYAWEFLTSVLKLPADRLV 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITT--------NDNFWSMAETGPCGPCSEIFFD 178 +TVY+ D+EAF +W K G+ AD+I+RI +DNFW M +TGPCGPC+EIF+D Sbjct: 128 VTVYETDDEAFDIWNKEIGIPADRIVRIGDKKGGKPFESDNFWQMGDTGPCGPCTEIFYD 187 Query: 179 QGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ I GG PG+ EE G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+A ++ Sbjct: 188 HGDHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQVDGTMEPLPKPSVDTGMGIERIAAIM 247 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 Q +NY+ID+F+ LI+ + +V G + N + RV+ DH+RS ++LI+DG++P+NEGR Sbjct: 248 QGVHSNYEIDIFQTLIKEAAKVIGFEDLSNQSL--RVVADHIRSCAYLISDGVMPSNEGR 305 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + LG L+ L MG+A EL + L+E+ L+ E++ Sbjct: 306 GYVLRRIIRRAVRHGNKLGAEGAFFYKLVGPLAEIMGTAGEELKAQQELVEKVLKIEEDN 365 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 FG+TLDRGL +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG ID Sbjct: 366 FGRTLDRGLTILNEALDKL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFT-IDEDG 423 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+EEQR RAR A + G+ K+ T F GY Sbjct: 424 FEAAMEEQRQRARDAGNFGVDYNNAIKV-------DAETVFCGY---------------- 460 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 T+G S IV A+ + G V+ +G++ VV TPFYAE+GGQ GD+G Sbjct: 461 ------SATDGESEIV-ALYRDGVAVDSVNAGEEALVVLTNTPFYAESGGQCGDSGILTA 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + + D QK I H V G L L ++D R +S+NHSATHL+H A Sbjct: 514 EAVLFNVDDTQKFGAAIG-HKGQVAEGSLTVGQKLTASVDSARRAAISLNHSATHLMHAA 572 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L TILG HVSQ GS + DGLRFD ++ + + +L+++E VND I N + T IM+ Sbjct: 573 LRTILGEHVSQKGSLVKADGLRFDFSNLEAVKPEQLRAVETMVNDQIRANHVIETNIMDI 632 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E A A GA AL G KY+D VRV+S+ G S+ LCGG H + TG+I L I+SES I Sbjct: 633 EAAKAKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHATRTGDIGLFKILSESGI 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AGIRRIEA+TG + + +D L A +K +VV +VE + ++L ++ Sbjct: 688 AAGIRRIEAVTGAASIEEMHNEDVMLAKTARLVKSDSASVVSKVEALVSHSKQLEKEIQQ 747 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831 K KL ++ ++N + +I+++ D+K L+ ++D L+ ++ SG+++L +S Sbjct: 748 LKDKLAAQEGANLINQAQEINGVKVLIAKLNGADNKALRGMVDELKNQLGSGVVLLGNVS 807 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K ++ VT+DL+ + A +L L A+ + GG GGGRP MAQ+GG + A+ Sbjct: 808 -DDKVGLIAGVTKDLVGKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGTDAAALPAALET 865 Query: 892 VASFL 896 VA +L Sbjct: 866 VAPWL 870 >gi|269965244|ref|ZP_06179378.1| alanyl-tRNA synthetase [Vibrio alginolyticus 40B] gi|269830230|gb|EEZ84457.1| alanyl-tRNA synthetase [Vibrio alginolyticus 40B] Length = 860 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/908 (42%), Positives = 550/908 (60%), Gaps = 65/908 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+I+RI +DNFW M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R A I Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR + G+ I + T+F GY +G Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGNFGTDYNAAIKVDTQ-----TEFCGYTATKG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 SS V A+ +G V+ +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ---------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAGE 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + D QK I HH ++ G+L + +D + R +S+NHSATHLL Sbjct: 511 IRTESGVFHVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + D LRFD +H + +T+AELK +E VN I +N + T + Sbjct: 570 HAALRQVLGEHVTQKGSLVKADNLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETNV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I SE Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AGIRRIEA+TG+ A + Q+ K + K+++ + + + +E +KL Sbjct: 685 SGIAAGIRRIEAVTGEAALDAIEAQNAKYEE-----KLAES--AQKAKALEKEVQKL--- 734 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGI 830 K K+ K +VN +++ + DSK L++++D ++ ++ SG+++L + Sbjct: 735 --KDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLLANV 792 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + K ++ VT+DL + A DL ++ A+ + GG GGGRP MAQ+GG + +AI Sbjct: 793 TGD-KVGLIAGVTKDLTGKVKAGDLVKMIAEQV-GGKGGGRPDMAQAGGTDVAALPEAIK 850 Query: 891 GVASFLKK 898 V +L++ Sbjct: 851 TVQPWLEE 858 >gi|261253947|ref|ZP_05946520.1| alanyl-tRNA synthetase [Vibrio orientalis CIP 102891] gi|260937338|gb|EEX93327.1| alanyl-tRNA synthetase [Vibrio orientalis CIP 102891] Length = 860 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/909 (42%), Positives = 550/909 (60%), Gaps = 67/909 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W + G+ AD+I+RI +DNFW+M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNQKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK ++DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G + N + RVI DH+RS SFLIADG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEVVGHEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F +A+EEQR RAR A G T K T+F GY +G Sbjct: 420 DEAGFEKAMEEQRQRAREAGQFGTDYNATIKT-------EAETEFCGYAGTQG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S V I +GE E +G K ++ +TPFYAE+GGQ GD G Sbjct: 466 ----------------NSNVAEIFVEGEAAESLSAGDKAIIILSETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + ++ D QK I HH ++ G+L + +D + R +S+NHSATHL Sbjct: 510 VLKTESGLFKVEDTQKLGNAI-AHHGVLAEGVLAKGDEVEAVVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + P+ LRFD ++ + +T AELK +E VN + +N + T Sbjct: 569 LHAALRQVLGEHVAQKGSLVKPENLRFDFSNLEAVTPAELKEVERLVNAQVRRNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AGIRRIEA+TG+ A + ++++ K ++ +Q + + + +E +KL Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAI--EEQQAKYEEKLVESAQ-----KAKSLEKEIQKL-- 734 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829 K K+ K+ D+N +++ + D+K L++++D ++ ++ SG+I+L Sbjct: 735 ---KDKMAAAESANIMGKVQDINGTKVLVAALEGADNKNLRTMVDDIKNQVGSGVILLAN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I+ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + AI Sbjct: 792 IN-DDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALPDAI 849 Query: 890 AGVASFLKK 898 V +L++ Sbjct: 850 QSVQPWLEE 858 >gi|239503494|ref|ZP_04662804.1| alanyl-tRNA synthetase [Acinetobacter baumannii AB900] Length = 878 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/914 (44%), Positives = 535/914 (58%), Gaps = 60/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT E L + Sbjct: 64 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 124 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GGLPGS EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 244 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L KD+ + G FKLYDT+G P D+ DI RG ID Sbjct: 362 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + ++ + G TQF GY Sbjct: 420 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 459 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 T G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 460 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D KK+ G FVH IV G L+T ++ + R + NHSATHLLH Sbjct: 511 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I N V T ++ Sbjct: 570 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTTELL 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I SE Sbjct: 630 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 689 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEA+TG +A + D ++ + S LK + V RV E LQ Sbjct: 690 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVHANVELVSALQ-- 747 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K+ QLN DL IA + + VD+K L+++ D+++ K+++ + Sbjct: 748 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 805 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 806 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 863 Query: 885 ADQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 864 FGQVMAALPAWLEQ 877 >gi|237745661|ref|ZP_04576141.1| alanyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] gi|229377012|gb|EEO27103.1| alanyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] Length = 870 Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/908 (43%), Positives = 546/908 (60%), Gaps = 58/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF+ GH ++ SS L+P NDPTLM TN+GMV FK++F G +K Y T+V Sbjct: 4 AEIREKFLSFFKAKGHTVVRSSPLVPANDPTLMLTNAGMVQFKDVFLGLDKRPYTRATSV 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AWDLLT + L + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHFAWDLLTTVYKLPPEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L+ TVY ED+EA+ +W GL ++I+RI N DNFW MA+TGPCGPCSEIF+ Sbjct: 124 LWATVYQEDDEAYDIWANEIGLPKERIVRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS E+G+RYIEIWNLVFMQF + + LP +DTGMGLER+A V Sbjct: 184 DHGPEIAGGPPGSPDEDGDRYIEIWNLVFMQFNRDEQGNMTPLPSPCVDTGMGLERLAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF++LI+A+ + TG NN + +VI DH+R+S+F+I DG++P ++G Sbjct: 244 LQHVHSNYEIDLFQNLIRAAARETGTADLTNNSL--KVIADHIRASTFMIVDGLIPGSDG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 GYVLRRI+RRA+ + LG T P L+ L EMG+AYPEL ++ ++ LR E+E Sbjct: 302 HGYVLRRIIRRALRHGYKLGQTRPFFYKLVEDLVKEMGAAYPELAESAGYVQRILRHEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RFG+TLD G+ +L+ L+ K +LNG+ AF LYDT+G PLD+ DI RG+ +D Sbjct: 362 RFGETLDNGMKILESALADGTK--VLNGETAFTLYDTYGFPLDLTADICRERGIT-VDEQ 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ A+E+Q++ ARA SG K+ L+ T+F+GY+ L Sbjct: 419 GFDVAMEKQKATARA------SGKF-KMAAMLEYNGEKTRFVGYERLE------------ 459 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V A+ Q G VE+ V GQ VV D TPFYAE+GGQ+GD G +G Sbjct: 460 -----------ETGTVVALYQDGAPVEKIVEGQSGVVVLDVTPFYAESGGQVGDVGALLG 508 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +R + D QK + HH V G + + ++ + R Q NHS THL+H A Sbjct: 509 QHMRFDVEDTQKIQADVAGHHGKVVAGTIAVGDKVDARVNMELRAQTMRNHSVTHLMHKA 568 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS + PD RFD +H+ P+T E++ +E+ VN I N P + M+ Sbjct: 569 LRQVLGQHVAQRGSLVDPDKTRFDFSHNAPVTDDEIRQVEEIVNREIVANNPTQAQQMSF 628 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DAIA GA AL G KY D VRV+ + + S LCGGTHVS TG+I IVSE + Sbjct: 629 DDAIAHGATALFGEKYGDVVRVLDIGF------SCELCGGTHVSRTGDIGFFKIVSEGGV 682 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQL 772 AGIRRIEA+TG A + K+ A LK +V R+ ++ ++ R+L Sbjct: 683 AAGIRRIEAVTGLAAMYWVQEMARKVGEAAVALKTQPDELVNRIVQLQDQMKGLDRELST 742 Query: 773 IHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + A R DL+ + V ++ +I D L++ MD L+ ++++ I+L + Sbjct: 743 LKA-RFASSQGNDLAAKAVDVKGVKVLASLIEGADVPGLRNAMDKLKDRLKTAAIVLASV 801 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K+ K S++ +T D+ + A +L A+ + GG GGGRP MAQ+GG + + +A+ Sbjct: 802 -KDGKVSLIAGITSDMTAKIRAGELVNHVARQV-GGKGGGRPDMAQAGGSDPSALPEALK 859 Query: 891 GVASFLKK 898 V +++++ Sbjct: 860 SVKNWVEE 867 >gi|120598090|ref|YP_962664.1| alanyl-tRNA synthetase [Shewanella sp. W3-18-1] gi|146293839|ref|YP_001184263.1| alanyl-tRNA synthetase [Shewanella putrefaciens CN-32] gi|120558183|gb|ABM24110.1| alanyl-tRNA synthetase [Shewanella sp. W3-18-1] gi|145565529|gb|ABP76464.1| alanyl-tRNA synthetase [Shewanella putrefaciens CN-32] Length = 892 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/909 (42%), Positives = 559/909 (61%), Gaps = 58/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R+ FLEFF+ +GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 22 TTAELRSAFLEFFRSHGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRNYTRAT 81 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI W LT+ L + Sbjct: 82 TAQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAICFGWSFLTETLKLPK 141 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y D+EAF++W K G++A+ IIRI N DNFW M +TGPCGPC+EI Sbjct: 142 ERLCVTIYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 201 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS EE G+R+IEIWN+VFMQ+ + E LPK S+DTGMG+ER+A Sbjct: 202 FYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQYNRHISGEMLPLPKPSVDTGMGIERIA 261 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI + ++ G+ N + RVI DH+RS +FL+ADG++P+N Sbjct: 262 AIMQGVHSNYEIDIFRALIAKAAEIIGVTDLSNKSL--RVIADHIRSCAFLVADGVMPSN 319 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG TE L+P L MG A L + ++++E+ L++E Sbjct: 320 EGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIDVMGDAAKGLAETQVIVEKALKAE 379 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +TL+RGL +LD LS L D L+G+ FKLYDT+G P+D+ D+ R + +D Sbjct: 380 EEQFARTLERGLGILDAALSELTGD-TLDGETVFKLYDTYGFPMDLTADVCRERNII-VD 437 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+ EQRSRA+A +G + + + T F GY L G Sbjct: 438 EAGFEAAMAEQRSRAQA------AGNFGADYNAALKIDAETAFCGYTELVG--------- 482 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI Q GE V +G + +V D TPFYAE+GGQ+GD G Sbjct: 483 --------------QAKVTAIYQNGESVTAIKAGDEAVLVLDVTPFYAESGGQVGDKGQL 528 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +GI + D QK + H ++ G L + +D + R + +NHS THLLH Sbjct: 529 VANGIEFTVNDTQKYGQATG-HQGVLVAGSLSIGQMVEAKVDKKLRHRTQLNHSVTHLLH 587 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV+Q GS + P+ LRFD +H + + AELK +E+ VN I +N + M Sbjct: 588 AALRQVLGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKKVEELVNTQIRRNHELKVAEM 647 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A GA AL G KY+ +VRVV++ G S LCGGTHV TG+I L I SE Sbjct: 648 AIDEAKEKGAMALFGEKYDAQVRVVTM-----GDFSIELCGGTHVGRTGDIGLFKITSEG 702 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG A +++ Q +L+ A+ LK +VV +++ ++ ++L+ Sbjct: 703 GIAAGVRRIEAVTGAAAMAYVAQQQAELEEAAALLKGDTHSVVAKLKAQLDKMKQLEKDM 762 Query: 775 AKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828 A+ K +L S + D VN ++ +I ++D E L+ + D L++K++S II+L Sbjct: 763 AQLKDKLAAA-ASADLVGDAVVVNGVNVLIKKLDGVEAGSLRGLQDELKQKLKSAIIVL- 820 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G ++E K +++ V+ DL+ + A +L A ++A+V GG GGGRP MAQ+GG D Sbjct: 821 GTAQEGKVNLIAGVSNDLVGKVKAGELVAMVAAQV--GGKGGGRPDMAQAGGSQPENLDA 878 Query: 888 AIAGVASFL 896 A+A V ++ Sbjct: 879 ALAQVLPWI 887 >gi|169633133|ref|YP_001706869.1| alanyl-tRNA synthetase [Acinetobacter baumannii SDF] gi|169151925|emb|CAP00779.1| alanyl-tRNA synthetase [Acinetobacter baumannii] Length = 878 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT E L + Sbjct: 64 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 124 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GGLPGS EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 244 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L KD+ + G FKLYDT+G P D+ DI RG ID Sbjct: 362 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RA +G + ++ + G TQF GY Sbjct: 420 EAGFEVEMAAQRQRAH------DAGKFAVDYNNIVKVEGETQFDGY-------------- 459 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 T G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 460 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D KK+ G FVH IV G L+T ++ + R + NHSATHLLH Sbjct: 511 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATAHNHSATHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILGSHV Q GS +T D LRFD + +P++ +L+ +E VN I N V T ++ Sbjct: 570 AALRQILGSHVQQKGSLVTSDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTTELL 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I SE Sbjct: 630 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 689 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E LQ Sbjct: 690 GGVAAGVRRIEAVTGTKALEVVQKADHDIQYINSLLKAQKDQTVERVQANVELVSALQ-- 747 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K+ QLN DL IA + + VD+K L+++ D+++ K+++ + Sbjct: 748 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 805 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 806 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 863 Query: 885 ADQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 864 FGQVMAALPAWLEQ 877 >gi|53725058|ref|YP_102626.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 23344] gi|67639261|ref|ZP_00438139.1| alanine--tRNA ligase [Burkholderia mallei GB8 horse 4] gi|254177470|ref|ZP_04884125.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 10399] gi|254199562|ref|ZP_04905928.1| alanyl-tRNA synthetase [Burkholderia mallei FMH] gi|254205880|ref|ZP_04912232.1| alanyl-tRNA synthetase [Burkholderia mallei JHU] gi|59798500|sp|Q62KZ3|SYA_BURMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52428481|gb|AAU49074.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 23344] gi|147749158|gb|EDK56232.1| alanyl-tRNA synthetase [Burkholderia mallei FMH] gi|147753323|gb|EDK60388.1| alanyl-tRNA synthetase [Burkholderia mallei JHU] gi|160698509|gb|EDP88479.1| alanyl-tRNA synthetase [Burkholderia mallei ATCC 10399] gi|238519796|gb|EEP83263.1| alanine--tRNA ligase [Burkholderia mallei GB8 horse 4] Length = 874 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/910 (42%), Positives = 544/910 (59%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTSVYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSEI Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKAPFFHKLVADLVAEMGAAYPELKEAEPRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 360 EERFFETIEHGMSILEAALAELDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V E +G+ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 510 VLANAATRFAVGDTLKVQADVIGHHGELEQGTLKVGDVVRAEIDAARRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + R Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV+ Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELLQRIGQVQDQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K KL + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S++ VT D + A +L A+ + GG GGGR MAQ+GG K Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRSDMAQAGGTEPAKLPA 861 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 862 ALAGVKGWVE 871 >gi|187924800|ref|YP_001896442.1| alanyl-tRNA synthetase [Burkholderia phytofirmans PsJN] gi|205830007|sp|B2SZN0|SYA_BURPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|187715994|gb|ACD17218.1| alanyl-tRNA synthetase [Burkholderia phytofirmans PsJN] Length = 874 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/910 (41%), Positives = 541/910 (59%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L + Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+ GPCGPCSEI Sbjct: 122 DKLWVTVYHEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADVGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFSRDAQGNMTPLPKQCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQALIKAAGRETGVSDLTNNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG ++ L +MG AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRMVADLVAQMGDAYPELKEAEQRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ C Sbjct: 360 EERFFETIEHGMSILESALADLEAKGGKTLDGELAFKLHDTYGFPLDLTADV-CREREVT 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F++A+ QR +ARA K+ L+ T F GY+ + + +D Sbjct: 419 VDEAAFDEAMARQREQARA-------AGKFKMAQGLEYSGAKTTFHGYE-----EIVFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ G V+E G++ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVI-----------------ALYVDGASVKEVRDGRQAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +R ++D K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 510 VLANASVRFAVSDTLKVQADVVGHHGTLEQGTLKVGDVVKAEIDAVRRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T +++ +E+ VN + N P + R Sbjct: 570 MHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV Sbjct: 630 VMPFDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVM 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A + D ++ + A+ LK + R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRFVQDLDARINAAAAVLKAQPSELTQRITQVQDQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K K+ + D ++ V+ ++ + D K L+ +D L+ K++S I+L Sbjct: 744 ELSALKSKMASSQGDELAGQAIEVGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 804 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861 Query: 888 AIAGVASFLK 897 A+AGV +++ Sbjct: 862 ALAGVKGWVE 871 >gi|262273675|ref|ZP_06051488.1| alanyl-tRNA synthetase [Grimontia hollisae CIP 101886] gi|262222090|gb|EEY73402.1| alanyl-tRNA synthetase [Grimontia hollisae CIP 101886] Length = 860 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/909 (42%), Positives = 546/909 (60%), Gaps = 67/909 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FLEFF+ GH ++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEIRRAFLEFFESKGHAIVSSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF LW + G+ AD+I+RI +DNFW M +TGPCGPC+E Sbjct: 124 ERLMVTVYETDDEAFALWNEKIGIPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+R+IEIWN VFMQ+ + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQYNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A ++Q +NY+ID+F+ LI+++ +V G Y+ + + RV+ DH+RS +FLI DG++P+ Sbjct: 244 AAIMQGVHSNYEIDVFQTLIKSAAEVIG--YDDLSNQSLRVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG T L+ L MGSA EL + + ++E+ L+ Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGATGAFFYKLVGPLAEVMGSAGEELKKQQAVVEKVLKI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT+G P D+ D+ RG + I Sbjct: 362 EEENFGRTLDRGMAILNDALEAL-DGKVLDGETVFKLYDTYGFPADLTNDVARERGFS-I 419 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F A+E QR RAR A G K+ G + F GY G Sbjct: 420 DEEGFEAAMEAQRQRAREAGQFGTDYNAVIKV-------DGESAFTGYGATEG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ I G E + + ++ DQTPFYAE+GGQ GDTG Sbjct: 466 ----------------EGLITNIFVDGMASEALATADEAVIILDQTPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + + ++ D QK I H + G L ++ +D + R+ +++NHSATHL Sbjct: 510 FLVTEAGKFEVIDTQKYGAAI-GHRGKLVDGTLSVGDTVDAKVDAERRQAIALNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + +GLRFD +H + + EL+++E VN+ I +N V T Sbjct: 569 LHEALRVVLGEHVQQKGSLVRAEGLRFDFSHLEAVKPEELRAVEKLVNEHIRRNHEVSTE 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN E A A GA AL G KY+D VRV+++ G S LCGGTH + TG+I +L IVS Sbjct: 629 IMNIEAAKAKGAMALFGEKYDDNVRVLTM-----GDFSIELCGGTHANRTGDIGMLKIVS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E I AG+RRIEA+TGQ A Q ++ KVS+ R+ E +++QL Sbjct: 684 EGGIAAGVRRIEAVTGQGAEEAFYSQQQEFAK-----KVSESQNRARLLE-----KEIQL 733 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829 + K KL + + ++N + +IS++ DSK L++++D L+ ++ SG++ L Sbjct: 734 L--KEKLAAQESANLINNVEEINGIKVLISKLDGADSKALRTMVDDLKNQMGSGVVFLAN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + A+ Sbjct: 792 VA-DDKVGLIAGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGSDVAALPAAL 849 Query: 890 AGVASFLKK 898 A V+ +L + Sbjct: 850 ASVSPWLAE 858 >gi|50122289|ref|YP_051456.1| alanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043] gi|59798525|sp|Q6D1T0|SYA_ERWCT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49612815|emb|CAG76265.1| alanyl-tRNA synthetase [Pectobacterium atrosepticum SCRI1043] Length = 875 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/909 (43%), Positives = 557/909 (61%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPC+ Sbjct: 124 PKEKLWVTVYATDDEAYGIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD GE I GG PGS E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NYDIDLFK LI A + G N + RVI DH+RS +FLI+DG++P Sbjct: 244 VSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTDLTNKSL--RVIADHIRSCAFLISDGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA + +LG T+ L+ L MG A EL + + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIEVMGPAAEELKKQQSVVEQALK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F +TL+RGL LLD + +L K + L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 362 MEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+ QR RAR S G G + E T F GY+ ++ Sbjct: 420 VDEEGFEAAMTAQRQRARDAS---GFGVDYNSLIRVDEN---TPFCGYEK------TQQQ 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ G V++ +G + V+ ++TPFY E+GGQ+GD G Sbjct: 468 AKVI-----------------ALYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + D QK + I H + +G+LR S+ +D Q R ++ +NHSATHL Sbjct: 511 ELKNAGVSFAVQDTQKYGQAIG-HVGKLTQGMLRVNDSVDANVDSQRRDRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H++ + +++ +ED VN I +NL V T Sbjct: 570 LHAALRQVLGVHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQTD 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA A GA AL G KY+D VRV+S+ G S LCGGTH S TG+I L I+S Sbjct: 630 VMALDDARAKGAMALFGEKYDDHVRVLSM-----GDFSIELCGGTHASRTGDIGLFQIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA TG+ A S L Q + L+ +A LK N+ +V + + R L+ Sbjct: 685 ESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRSRALEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ S K ++N + ++++ VD K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKAQQAAQESSSLSGKATEINGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G + E + S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 805 -GTAAEGRVSLISGVTKDLTDRVKAGELVGFVAQQV-GGKGGGRPDMAQAGGSDVSALPA 862 Query: 888 AIAGVASFL 896 A+A V S++ Sbjct: 863 ALASVESWV 871 >gi|330889188|gb|EGH21849.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. mori str. 301020] Length = 874 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/911 (43%), Positives = 544/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + +A + G GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMKQAAAAV-SGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|91227829|ref|ZP_01262002.1| alanyl-tRNA synthetase [Vibrio alginolyticus 12G01] gi|91188339|gb|EAS74635.1| alanyl-tRNA synthetase [Vibrio alginolyticus 12G01] Length = 860 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/908 (42%), Positives = 551/908 (60%), Gaps = 65/908 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTEVLKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+I+RI +DNFW M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKPYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R A I Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR + G+ I + T+F GY +G Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGNFGTDYNAAIKVDTQ-----TEFCGYTGTKG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 SS V A+ +G V+ +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ---------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAGE 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ++ D QK I HH ++ G+L + +D + R +S+NHSATHLL Sbjct: 511 IRTESGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + D LRFD +H + +T+AELK +E VN I +N + T + Sbjct: 570 HAALRQVLGEHVTQKGSLVKADNLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETNV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I SE Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASSTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AGIRRIEA+TG+ A + Q+ K + K+++ + + + +E +KL Sbjct: 685 SGIAAGIRRIEAVTGEAALDAIEAQNAKYEE-----KLAES--AQKAKALEKEVQKL--- 734 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGI 830 K K+ K +VN +++ + DSK L++++D ++ ++ SG+++L + Sbjct: 735 --KDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVLLANV 792 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + K ++ VT+DL + A DL ++ A+ + GG GGGRP MAQ+GG + +AI Sbjct: 793 TGD-KVGLIAGVTKDLTGKVKAGDLVKMIAEQV-GGKGGGRPDMAQAGGTDVAALPEAIK 850 Query: 891 GVASFLKK 898 V +L++ Sbjct: 851 TVQPWLEE 858 >gi|37680987|ref|NP_935596.1| alanyl-tRNA synthetase [Vibrio vulnificus YJ016] gi|41018162|sp|Q7MHR6|SYA_VIBVY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|37199737|dbj|BAC95567.1| alanyl-tRNA synthetase [Vibrio vulnificus YJ016] Length = 860 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/907 (43%), Positives = 546/907 (60%), Gaps = 67/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W + G+ AD+IIRI +DNFW+M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKQYESDNFWTMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ ++ G + N + RVI DH+RS SFLIADG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEIVGCEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAADELKKQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR + G+ KI + ++F GY Sbjct: 420 DEAGFEKAMEEQRQRAR-EAGQFGTDYNAKIKVDAQ-----SEFCGY------------- 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ +GE +G K V+ +TPFYAE+GGQ GD+G Sbjct: 461 ----------TSTQERSDVVALFVEGEETATLSAGDKAIVILQETPFYAESGGQCGDSGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + Q+ D QK I HH ++ G+L + +D + R +S+NHSATHLL Sbjct: 511 LKTESGLFQVEDTQKLGNAI-AHHGVLVEGVLAKGDQVTAIVDAERRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AELK +E VN I +N + T I Sbjct: 570 HAALRQVLGEHVAQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETNI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 630 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A + Q +EKL+ A+ K + +EI + K Sbjct: 685 GGIAAGIRRIEAVTGEAALEAIDAQARKFEEKLQDAANKAKSLE-------KEIQQLKDK 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L + N+ D +IA V + + D+K L+ ++D L+ ++ SGIIML Sbjct: 738 L-----ASQASANLID-QVKEIAGVKVLVAKLDGADNKALRGMVDELKNQMGSGIIMLGN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K ++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + + A+ Sbjct: 792 VA-DDKVGLIAGVTQDLTSKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDSSALPSAL 849 Query: 890 AGVASFL 896 A V +++ Sbjct: 850 ASVDAWI 856 >gi|260557541|ref|ZP_05829756.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606] gi|260409167|gb|EEX02470.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 19606] Length = 883 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 9 AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT E L + Sbjct: 69 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY+TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 129 DKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GGLPGS EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 189 FFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL + +IE TL E Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIRE 366 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L KD+ + G FKLYDT+G P D+ DI RG ID Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERGFI-ID 424 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + ++ + G TQF GY Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 T G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 465 --------TNTTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D KK+ G FVH IV G L+T ++ + R + NHSATHLLH Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATARNHSATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILGSHV Q GS + D LRFD + +P++ +L+ +E VN I N V T ++ Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTTELL 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I SE Sbjct: 635 DIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E LQ Sbjct: 695 GGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKAQKDQTVERVQANVELVSALQ-- 752 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K+ QLN DL IA + + VD+K L+++ D+++ K+++ + Sbjct: 753 --KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAV 810 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G+ + K S++ V A D+ + A L GG GGG+P +AQ G P K Sbjct: 811 IVLAGVEGD-KVSLIASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868 Query: 885 ADQAIAGVASFLKK 898 Q +A + ++L++ Sbjct: 869 FGQVMAALPAWLEQ 882 >gi|152977739|ref|YP_001343368.1| alanyl-tRNA synthetase [Actinobacillus succinogenes 130Z] gi|205829971|sp|A6VKD6|SYA_ACTSZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|150839462|gb|ABR73433.1| alanyl-tRNA synthetase [Actinobacillus succinogenes 130Z] Length = 874 Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/916 (42%), Positives = 555/916 (60%), Gaps = 64/916 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHSKGHQVVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT K Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKYDAINFAWEFLTSPKWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ + IIRI N DNFW+M +TGPCGP Sbjct: 121 ALPKEKLYVTVYETDDEAYDIWNKEVGVPQEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GGLPG+ EE G+RYIEIWN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGLPGTPEEDGDRYIEIWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM VLQ +NY+ID+F+ LI+ ++ G GN + RVI DH+RS ++LIADG+ Sbjct: 241 ERMTAVLQHVNSNYEIDIFQTLIKKVAEIVGTTDLGNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M A ++ + + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKETFFYKLVPTLIEVMAEAGKQVKEKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL+LLD L+++ K+ +L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLILLDAELANV-KNGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A +D F++ +E QR RA+ A + G+ + S+ G T+F GY Sbjct: 418 A-VDENGFDKEMEAQRLRAQSASNFGMD-------YTSIIRVDGETKFEGY--------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVK--AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 TN V S+ K A+ + G+ VE +GQ V+ + TPFYAE GGQ Sbjct: 461 ---------------TN-VESLAKVTALFRDGKAVESVSAGQSAVVILENTPFYAEMGGQ 504 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD+G +G+ + D QK + +F H + +G L + +D Q R+ +NH Sbjct: 505 IGDSGMLTANGLHFDVKDTQKYGQ-VFGHIGELTQGTLSVGQIVNAQVDAQRRQYTKLNH 563 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLLH AL +LG HV+Q GS ++ GLRFD + +T ++ IE VN I N Sbjct: 564 SATHLLHAALRQVLGEHVAQKGSLVSDVGLRFDFVQPEAVTKEQIMEIERLVNFHIRANH 623 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV+T M +A + GA AL G KY + VRVV++ S LCGG HV TGEI L Sbjct: 624 PVLTEEMGVAEAKSKGAIALFGEKYGETVRVVTMS-----PFSIELCGGLHVERTGEIGL 678 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 L I+SE ++ AGIRR+EA+TG+ A + L Q L A LK ++ ++ ++ ++ Sbjct: 679 LKIISEGAVAAGIRRVEAVTGEEAINWLFNQQTILAQSADLLKSDIPSLPEKIIQLQDKV 738 Query: 768 RK----LQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 +K LQ + K +Q DL S KI V+ ++H + D+K L+ ++D L+ ++ Sbjct: 739 KKTEKELQQLKEKAAMQAG-SDLAKSAVKINGVSVVTHQLDGADAKVLRVMVDDLKNQLG 797 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +I L G + K +++ VT DL + A +L + A+ + GG GGGRP MA +GG Sbjct: 798 SAVIAL-GSASGGKVNLIAGVTADLTAKVKAGELVNVMAQQV-GGKGGGRPDMAMAGGSQ 855 Query: 882 GNKADQAIAGVASFLK 897 A+ + +LK Sbjct: 856 PENLSAALIVASDWLK 871 >gi|269960382|ref|ZP_06174755.1| alanyl-tRNA synthetase [Vibrio harveyi 1DA3] gi|269834809|gb|EEZ88895.1| alanyl-tRNA synthetase [Vibrio harveyi 1DA3] Length = 860 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/912 (42%), Positives = 548/912 (60%), Gaps = 73/912 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTVTLKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W + G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNQKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLAEIMGTAGEELKRQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R A I Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR + G+ I + T+F GY +G Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGNFGTDYNAAIKVDTQ-----TEFCGYTGTKG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 SS V A+ +G VE +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ---------------SSSVAAMFVEGNEVESLSAGDKAIIVLGETPFYAESGGQCGDAGE 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ++ D QK I HH ++ G+L + +D + R +S+NHSATHLL Sbjct: 511 IRTEAGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + D LRFD +H + +T+AELK +E VN I +N + T + Sbjct: 570 HAALRQVLGEHVTQKGSLVKADSLRFDFSHLEAVTAAELKEVERLVNAQIRRNHTIETNV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A + Q +EKL A + + + +E +K Sbjct: 685 GGIAAGIRRIEAVTGEGALDAIEAQAAKYEEKLAESAQ-----------KAKSLEKEIQK 733 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826 L K K+ K+ D+N +I+ + D+K L++++D ++ ++ SG+I+ Sbjct: 734 L-----KDKMAAAESANIMGKVQDINGTKVLIAALEGADNKNLRTMVDDIKNQVGSGVIL 788 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 789 LANVN-DDKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVAALP 846 Query: 887 QAIAGVASFLKK 898 AI V +L++ Sbjct: 847 AAIQSVQPWLEE 858 >gi|325496257|gb|EGC94116.1| alanyl-tRNA synthetase [Escherichia fergusonii ECD227] Length = 839 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/860 (45%), Positives = 538/860 (62%), Gaps = 56/860 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154 SFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ ++IIRI Sbjct: 61 SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120 Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFM 206 N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VFM Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180 Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266 QF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS 240 Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L+ Sbjct: 241 NKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386 L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D L+G+ Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGET 357 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ I Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRV 415 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 A++F GYD L ++ V A+ G+ V+ Sbjct: 416 D-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + G L+ Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLK 506 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 567 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L +A Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVA 681 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE- 803 LK N+ +V + E R+L+ + K Q ++ + K DVN + ++SE Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741 Query: 804 --VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L + A+ Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800 Query: 862 VLGGGGGGGRPHMAQSGGPN 881 + GG GGGRP MAQ+GG + Sbjct: 801 QV-GGKGGGRPDMAQAGGTD 819 >gi|253689580|ref|YP_003018770.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756158|gb|ACT14234.1| alanyl-tRNA synthetase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 875 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/909 (43%), Positives = 551/909 (60%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPC+ Sbjct: 124 PKEKLWVTVYATDDEAYDIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD GE I GG PGS E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NYDIDLFK LI+A G N + RVI DH+RS +FLIADG+ P Sbjct: 244 ISAVLQHVNSNYDIDLFKTLIEAVANAVGTTDLTNKSL--RVIADHIRSCAFLIADGVTP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA + +LG T+ L+ L MG A EL + + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIEVMGPAAAELKKQQSVVEQALK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F +TL+RGL LLD + +L K + L+G+ AF+LYDT+G P+D+ D+ RGL Sbjct: 362 MEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETAFRLYDTYGFPVDLTADVCRERGLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+ QR RAR S G G + E T F GY+ ++ Sbjct: 420 VDEEGFEAAMTAQRQRAREAS---GFGVDYNSLIRVDEN---TPFCGYEK------TQQQ 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ G V++ +G + V+ ++TPFY E+GGQ+GD G Sbjct: 468 AKVI-----------------ALYHNGNAVDQIAAGDEAVVILNETPFYGESGGQVGDQG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + D QK + I H + +G LR S+ +D Q R ++ +NHSATHL Sbjct: 511 ELKNAGVSFAVQDTQKYGQAIG-HVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H++ + +++ +ED VN I +NL V T Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRQVEDIVNAQIRRNLTVQTD 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA A GA AL G KY+D VRV+++ G S LCGGTH S TG+I L I+S Sbjct: 630 VMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHASRTGDIGLFQIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA TG+ A S L Q + L+ +A LK N+ +V + + R L+ Sbjct: 685 ESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALEK 744 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ S +++ V + + VD K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKAQQAAQESSSLSGKAKEVSGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E + S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + + Sbjct: 805 -GTVAEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDVSALPA 862 Query: 888 AIAGVASFL 896 A+A V S++ Sbjct: 863 ALASVESWV 871 >gi|328954420|ref|YP_004371754.1| alanyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109] gi|328454744|gb|AEB10573.1| alanyl-tRNA synthetase [Desulfobacca acetoxidans DSM 11109] Length = 878 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/897 (42%), Positives = 547/897 (60%), Gaps = 47/897 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL +F+ H + SSSL+P +DPTL+FTN+GMV FK +F G+E+ Y + QK Sbjct: 6 IREKFLAYFESKRHVRVASSSLVPAHDPTLLFTNAGMVQFKRLFLGEEQRGYSRAASAQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK AI++AW+LLT+ + L RL+ Sbjct: 66 CVRAGGKHNDLENVGKTARHHTFFEMLGNFSFGDYFKAGAIEMAWELLTEHYKLPTERLW 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CI 183 TVY +D+EA LW + L ++I+R+ DNFW+M +TGPCGPCSEI DQGE C Sbjct: 126 ATVYHDDDEAADLWHDVIHLPRERIVRLGEKDNFWAMGDTGPCGPCSEIIIDQGEERACG 185 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P G + +RY+EIWNLVFMQF + + LPK SIDTGMGLER+ V+Q N Sbjct: 186 PDCGIGRC-DCDRYLEIWNLVFMQFNRDEQGNLTPLPKPSIDTGMGLERLTAVIQGVPTN 244 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +D DL + +I +E++ G+ Y + V +VI DH R+ +FLI DG+LP+NEGRGYVL Sbjct: 245 FDTDLIRPVIARTEELAGIAYGQDPALDVAFKVIADHCRAITFLITDGVLPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + RLLG+ +P + + + MG YPEL+ A+ I++ + +E+ERF +T Sbjct: 305 RRILRRAVRFGRLLGFKQPFLAPVGQKVIELMGGDYPELLDARSFIDQVVHNEEERFAET 364 Query: 362 LDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LD GL +L L L + L GD+AFKLYDT+G PLD++ D+L + L +D+ FN Sbjct: 365 LDHGLKILTDNLEDLKARGERRLPGDIAFKLYDTYGFPLDLITDVLQEQQLE-LDLSGFN 423 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + + QR +R G G ++ L++ AT F+GYD +F E Sbjct: 424 EHMSRQRESSRQSWKGGLPGELPPVYQVLQD-LEATVFVGYD-----QFEAE-------- 469 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S + AI+Q+G V A +G+ VE+V + TPFYAE+GGQ+ DTG G Sbjct: 470 ----------SQILAIIQEGATVSGAKAGRSVEIVVETTPFYAESGGQVADTGTIRGPDF 519 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ITDVQ+ + +H +++G +R +VL ID RRQ++ +H+ATHLLH AL Sbjct: 520 LITITDVQRLPNDVVIHKGEIKQGEIRVGKKVVLAIDAGRRRQIACHHTATHLLHAALRH 579 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG HV Q GS + PD RFD +H ++ A L +E ++ I QNLPV M +A Sbjct: 580 RLGDHVKQAGSLVAPDRFRFDYSHFTGLSDAVLAQLEVDLLHDIQQNLPVNVSYMPMSEA 639 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + +GA AL KY + VR+V+V GV S LCGG HV TG+I I+SESS+ AG Sbjct: 640 LETGAMALFDEKYGNIVRLVAVP----GV-SLELCGGAHVDQTGDIGFCKIISESSVAAG 694 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G A +L + ++L ++ LK +G ++ R++++ + R+L+ + Sbjct: 695 IRRIEAVCGAAALRYLQEESQELSAVGQRLKAGKGEILARLDKLLQRQRELEKEVEALQG 754 Query: 780 QLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 QL DL + V ++ + D K L+ D L+ ++QSG+I+L G + Sbjct: 755 QLAAARSGDLLERVRHVDGVKVLALEVDVADPKGLRDFADKLKDRLQSGVIIL-GSGRGD 813 Query: 835 KASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 KA ++ VVT+DL DR +A + L+A++ GG GGGRP MAQ+GGP K + ++ Sbjct: 814 KAMLITVVTKDLTDRLHAGKIVGELAARL--GGKGGGRPDMAQAGGPAKEKLPEVLS 868 >gi|113461263|ref|YP_719332.1| alanyl-tRNA synthetase [Haemophilus somnus 129PT] gi|123132149|sp|Q0I426|SYA_HAES1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|112823306|gb|ABI25395.1| alanyl-tRNA synthetase [Haemophilus somnus 129PT] Length = 874 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/914 (42%), Positives = 549/914 (60%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G + Y Sbjct: 1 MKTTAEIRQAFLDFFHSKGHQIVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLDTRSYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--F 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTSPEWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ + IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPEEKLYVTVYETDDEAYGIWHKGVGVPENHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE + GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGEHVWGGLPGSEEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ V+Q +NYDID+F+ LI ++TG K N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVIQHVNSNYDIDIFQKLIAKVAELTGEKDLTNKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG + L+P L M +A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPVLIDVMATAGKDVKAKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L ++ KD +L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLALLDEALINV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F + +E QR RA+A S G+ ++ G T F GY Sbjct: 418 R-IDEEGFEREMEVQRLRAQAASRFGVDYNNVIRV-------EGTTTFEGYTEAE----- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + V A+ +G+ VE +GQ V+ D TPFYAE+GGQ+G Sbjct: 465 ------------------TQAKVTALFYEGKSVESISAGQSAVVILDDTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D GC I +R + D QK + +F H + +G L ++ +D ++R + S+NHSA Sbjct: 507 DRGCLIATNMRFDVKDTQKYGQ-VFGHIGTLIQGTLNVGQTINAVVDTEHRTKTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG+HV+Q GS ++ LRFD + I +L IE VN I N V Sbjct: 566 THLLHAALRQVLGTHVAQKGSLVSDTILRFDFAQPEAIRQEQLFEIECLVNQHIRANHLV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 VT +M ++A A GA AL G KY D VRVV + G S LCGG HV TGEI L Sbjct: 626 VTEVMPIDEAKAKGAMALFGEKYGDVVRVVKM-----GEFSIELCGGIHVKRTGEIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IVSES+I AG+RR+EA+TG+ A + L Q + L A LK ++V +++++ ++ +K Sbjct: 681 IVSESAIAAGVRRVEAVTGEAAINWLQQQQQILMQSADLLKSDANSLVEKIQQLQDKAKK 740 Query: 770 ----LQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K ++ + S +I V+ + + +D K L+ ++D L+ ++ S + Sbjct: 741 TEKELQALKEKSAMKAGSDIAKSAVEINGVSVIVQQLENMDVKSLRVIVDDLKNQLGSAV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I V E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFV-TKTEDKVNLVVGVTTDLTSKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 +A+ +L K Sbjct: 859 ISKALTVCNEWLHK 872 >gi|167563044|ref|ZP_02355960.1| alanyl-tRNA synthetase [Burkholderia oklahomensis EO147] Length = 874 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/910 (42%), Positives = 538/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y TT Sbjct: 3 AAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 63 SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPAD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY +D+EA+ +W K G+ A +IIRI N DNFW M +TGPCGPCSEIF Sbjct: 123 KLWVTVYHDDDEAYDIWAKEVGVPAGRIIRIGDNKGARYASDNFWQMGDTGPCGPCSEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARETGIGDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGEAYPELKEAGQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L L + L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALGDLESKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLDYSGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYIDGSSVNEVKAGQSAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ + ID R + + NHSATHL+ Sbjct: 511 LANAVTRFAVADTLKVQADVIGHHGELEQGALKVGDVVRAEIDAARRARTARNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + R+ Sbjct: 571 HKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL G KY D VRV+ + + S LCGGTHV TG+I IV+E Sbjct: 631 MPYDEAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVAE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A H+ D ++ + A+ LK ++ R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRHVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKLLEKE 744 Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D L ++ V+ ++ + D+K L+ +D L+ K+++ I+L Sbjct: 745 LAALKSKLASSQGDELALQAIEVGGVHVLAATLDGADAKTLRETVDKLKDKLKNAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AVDG-GKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|90412109|ref|ZP_01220116.1| alanyl-tRNA synthetase [Photobacterium profundum 3TCK] gi|90327087|gb|EAS43466.1| alanyl-tRNA synthetase [Photobacterium profundum 3TCK] Length = 873 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/908 (42%), Positives = 539/908 (59%), Gaps = 56/908 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L Q Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTDVLGLPQ 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D+EAF +W K G+ AD+I+RI N DNFW M +TGPCGPC+EI Sbjct: 124 DRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PG+ EE G+R+IEIWN VFMQF +Q LPK S+DTGMG+ER+A Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRQADGTMEPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ S +V G YE + + RV+ DH+RS +FLI DG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQTLIKKSAEVIG--YEDLSNQSLRVVADHIRSCAFLIVDGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T L L MG+A EL + + L+E+ L+ E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGAFFYKLAGPLAEIMGTAGEELKKQQALVEKVLKIE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 ++ FG+TLDRGL +L+ L +L E L+G+ FKLYDT+G P D+ D+ R ID Sbjct: 362 EDNFGRTLDRGLTILNDALDNLSGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 FN A+E QR RAR A G+ + K+ + T+F GY Sbjct: 420 EEGFNNAMEAQRQRAREAGKFGVDYNESIKVDVN-------TEFCGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S + A+ + GE V+ ++G+ ++ D TPFYAE+GGQ GD G Sbjct: 460 ----------TGTAAQSRIIALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGV 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + +TD QK I H + +G L L +D R +++NHSATHLL Sbjct: 510 LTAESTMFNVTDTQKFGAAIG-HQGSLVQGALNIGDKLEAQVDVARRAAITLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + D LRFD ++ + + +L+ IE VN+ I N + T I Sbjct: 569 HSALRNLLGEHVAQKGSLVKADALRFDFSNLEAVKPEQLREIERVVNEQIRLNHSIDTNI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H +TG+I L I SE Sbjct: 629 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHAKNTGDIGLFKITSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 I AGIRRIEA+TG A L Q+ L AS +K +V +V + ++L+ Sbjct: 684 GGIAAGIRRIEAVTGAAAIDALHAQEALLSETASIVKSDAASVATKVSALLAHSKQLEKD 743 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828 + + KL + ++N + +I+++ D+K L+ ++D ++ K+ SGI++L Sbjct: 744 IQQLQDKLAAQESAGLLDQAKEINGVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLG 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S + K +++ VT+DL + A +L + A+ + GG GGGRP MAQ+GG + A Sbjct: 804 NVSGD-KVGLIVGVTKDLTGKVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAAALPAA 861 Query: 889 IAGVASFL 896 + V +L Sbjct: 862 LESVTPWL 869 >gi|330432525|gb|AEC17584.1| alanyl-tRNA synthetase [Gallibacterium anatis UMN179] Length = 874 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/898 (43%), Positives = 551/898 (61%), Gaps = 64/898 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSYLDFFHSKGHQIVASSSLVPENDPTLLFTNAGMNQFKDVFLGIDKRSYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIHFAWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ DEEA+ +W + G+ AD+I+RI N DNFW M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDEEAYNIWHQQIGVPADRIVRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQ+ + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQYNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NYDID+FK LI ++TG K N + RVI DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYDIDIFKVLIAKVAEITGEKDLANKSL--RVIADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+NEGRGYVLRRI+RRA+ + LLG + L+P L M A L + ++ IE+ Sbjct: 299 YPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPTLIEVMAQAGEILKEKQVHIEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ L K +L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLALLDAELASL-KGNVLSGEVAFKLYDTYGFPLDLTADVCRERDI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A ID FN+ +E QR RA+A S G+ + +L G T F GY Sbjct: 418 A-IDEDGFNREMEAQRERAQAASQFGMD-------YNNLIRVDGTTAFEGY--------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVK--AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + S+ K AI G+ V + +GQ ++ + TPFYAE+GGQ Sbjct: 461 ----------------HAAESLAKVSAIFVDGKEVNQVQAGQSAVIILENTPFYAESGGQ 504 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD+G + D QK + +F H +++G ++ +L +D + R+ S+NH Sbjct: 505 VGDSGILESADALFTVNDTQKYGQ-VFGHIGELKKGEIKVGQTLHAVVDAERRQATSLNH 563 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLLH AL +LG+HV+Q GS ++ LRFD + + I+ A++ IE VN I N Sbjct: 564 SATHLLHAALRQVLGTHVAQKGSLVSDKLLRFDFSQPEAISKAQIAEIERIVNSQIRANH 623 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V M+ E A A GA AL G KY DRVRV+++ G S LCGG HV TG+I L Sbjct: 624 VVSVEEMDIEAAKAKGAMALFGEKYGDRVRVITM-----GDFSIELCGGIHVKRTGDIGL 678 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSES+I AG RRIEA+TG+ A + ++ Q L A LK ++V +++++ + Sbjct: 679 FKIVSESAIAAGTRRIEAVTGEEAFNVVLAQQSLLTQSAELLKSDLPSIVEKIQQLQDRA 738 Query: 768 RK----LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 +K LQ + K +Q V DL+ I V + ++ VD K L+ ++D L+ ++ Sbjct: 739 KKLEKELQQLKEKSAVQA-VSDLAQKAQTINGVKVVIESVTGVDPKSLRIMVDDLKNQLG 797 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + +I+ G ++++K ++++ VT+DL + A +L A+++ GG GGGRP MA +GG Sbjct: 798 TAVIVF-GATQDEKVNLIVGVTQDLTGKVKAGELVNQLAQLV-GGKGGGRPDMAMAGG 853 >gi|320180884|gb|EFW55807.1| Alanyl-tRNA synthetase [Shigella boydii ATCC 9905] gi|320189025|gb|EFW63684.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. EC1212] Length = 839 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/860 (45%), Positives = 538/860 (62%), Gaps = 56/860 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154 SFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ ++IIRI Sbjct: 61 SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120 Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFM 206 N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VFM Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180 Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266 QF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS 240 Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L+ Sbjct: 241 NKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386 L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D L+G+ Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGET 357 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ I Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRV 415 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 A++F GYD L ++ V A+ G+ V+ Sbjct: 416 D-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + G L+ Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLK 506 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 567 MKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L +A Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVA 681 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE- 803 LK N+ +V + E R+L+ + K Q ++ + K DVN + ++SE Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741 Query: 804 --VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L + A+ Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800 Query: 862 VLGGGGGGGRPHMAQSGGPN 881 + GG GGGRP MAQ+GG + Sbjct: 801 QV-GGKGGGRPDMAQAGGTD 819 >gi|301026644|ref|ZP_07190061.1| alanyl-tRNA synthetase [Escherichia coli MS 196-1] gi|299879631|gb|EFI87842.1| alanyl-tRNA synthetase [Escherichia coli MS 196-1] Length = 839 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/860 (45%), Positives = 537/860 (62%), Gaps = 56/860 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154 SFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ ++IIRI Sbjct: 61 SFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRI 120 Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFM 206 N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VFM Sbjct: 121 GDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFM 180 Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266 QF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 181 QFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLS 240 Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L+ Sbjct: 241 NKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLV 298 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386 L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D L+G+ Sbjct: 299 GPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGET 357 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ I Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRV 415 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 A++F GYD L ++ V A+ G+ V+ Sbjct: 416 D-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAIN 447 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + G L+ Sbjct: 448 AGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLK 506 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ Sbjct: 507 VGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEA 566 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 567 MKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM----- 621 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L +A Sbjct: 622 GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVA 681 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE- 803 LK N+ +V + E R+L+ + K Q ++ + K DVN + ++SE Sbjct: 682 HLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSEL 741 Query: 804 --VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 V+ K L++++D L+ ++ S II+L + E K S++ V++D+ DR A +L + A+ Sbjct: 742 SGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELIGMVAQ 800 Query: 862 VLGGGGGGGRPHMAQSGGPN 881 + GG GGGRP MAQ+GG + Sbjct: 801 QV-GGKGGGRPDMAQAGGTD 819 >gi|90020946|ref|YP_526773.1| alanyl-tRNA synthetase [Saccharophagus degradans 2-40] gi|123396361|sp|Q21L68|SYA_SACD2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|89950546|gb|ABD80561.1| alanyl-tRNA synthetase [Saccharophagus degradans 2-40] Length = 875 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/908 (44%), Positives = 562/908 (61%), Gaps = 55/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL++F+ GH + SSSL+P NDPTL+FTN+GMV FK++F GQ+ Y T+ Sbjct: 4 AEIREAFLQYFESKGHSRVASSSLVPGNDPTLLFTNAGMVQFKDVFLGQDNRSYSRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEF-DLDQ 122 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT KE+ + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAINYAWEFLTSKEWLAIPT 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L +TVY +D+EA+ +W G+ D+IIRI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLCVTVYADDDEAYGIWANDVGVPEDRIIRIGDNKGGRYNSDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PG+ EE G+R+IEIWN+VFMQF + E LPK S+DTGMGLER+A Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNVVFMQFNRSVDGEMAPLPKPSVDTGMGLERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 V+Q +NY+IDLF+ L++A+ Q T + E + + RVI DH+RS +FL++DG+LP+N Sbjct: 244 AVMQHVHSNYEIDLFQALLEAAAQAT--QAEDKDAKSLRVIADHIRSCAFLVSDGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T+P L+ AL +MG AYPEL++ + IE+ L +E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGQTKPFFHTLVAALVEQMGEAYPELVRDQASIEKVLAAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +++F KTL++G+V+L+ LS L K I+ G+V F LYDT+G P+D+ DI R L +D Sbjct: 362 EDQFAKTLEKGMVVLESALSEL-KGTIIPGEVIFTLYDTYGFPVDLTNDIARERELT-LD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + ++ +E+Q+ RAR SG+ + + + G T F+GY L G Sbjct: 420 MDGYDALMEQQKKRARE------SGSFKVDYSATATIEGHTNFVGYSELTG--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V AI+ GE V+ GQ +V D TPFY E+GGQ GDTG Sbjct: 465 --------------DASVTAILVDGENVDTLTEGQSGVIVLDTTPFYGESGGQAGDTGYI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + DG + ++ D QK +H + G ++ +D R+ ++NHSATHLLH Sbjct: 511 VFDGAKFEVQDCQKSGAN-HLHVGQLLAGAVKVGDKAQPVVDSAVRQATALNHSATHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q GS + + LRFD +H + + ELK IE VN+ I N PV T + Sbjct: 570 AALRKVLGEHVTQKGSLVDSERLRFDFSHFEAVKPEELKQIESMVNEQIRLNSPVETELC 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A GA AL G KY D VRV+S+ GG S LCGGTHVS TG+I L+ I SES Sbjct: 630 DMEAAQQKGAMALFGEKYGDEVRVLSM----GGAFSVELCGGTHVSRTGDIGLIRITSES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772 I +G+RRIEA+TG++A S + + L + A LK S N++ +VE++ + R+L+ L Sbjct: 686 GIASGVRRIEAVTGEKALSVIDASADTLNAAAKLLKASPENLLDKVEQLIAQNRQLEKSL 745 Query: 773 IHAKRKLQLNVED--LS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 AK KL + D LS IA V ++ + VD+K L+ +MD L+ K+ + ++L Sbjct: 746 AAAKSKLASSSADEWLSEATDIAGVKVLAKAVEGVDAKSLRDMMDKLKNKLGTSAVILAS 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K S++ V++D + A D+ + A ++ GG GGGRP MAQ GG + AI Sbjct: 806 VN-DDKISLVAGVSQDATSKIKAGDMVKHVAGLI-GGKGGGRPDMAQGGGTDVEALPAAI 863 Query: 890 AGVASFLK 897 V + K Sbjct: 864 GSVLDWAK 871 >gi|323496144|ref|ZP_08101204.1| alanyl-tRNA synthetase [Vibrio sinaloensis DSM 21326] gi|323318888|gb|EGA71839.1| alanyl-tRNA synthetase [Vibrio sinaloensis DSM 21326] Length = 860 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/909 (42%), Positives = 545/909 (59%), Gaps = 67/909 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+I+RI +DNFW+M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK ++DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ ++ G + N + RVI DH+RS SFLIADG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEIVGHEDLSNQSL--RVIADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAGEELKKQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVAREREFT-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR GT +E+ T+F GY +G Sbjct: 420 DEEGFEKAMEEQRQRAREAGQ---FGTDYNATIKTEEQ---TEFCGYTGTQG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S V I +GE +G K ++ +TPFYAE+GGQ GD G Sbjct: 466 ---------------KSNVAEIFVEGEAAGSLSAGDKAIIILGETPFYAESGGQCGDAGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ++ D QK I HH ++ G+L + +D + R +S+NHSATHLL Sbjct: 511 LKTESGVFKVEDTQKLGNAI-AHHGVLAEGVLAKGDDVEAVVDAERRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + P+ LRFD +H + +T AELK +E VN + N + T + Sbjct: 570 HAALRKVLGEHVTQKGSLVKPENLRFDFSHLEAVTPAELKEVERLVNAQVRHNHVIETNV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 630 MDIESAKQKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A + Q +EKL AS + + + +E +K Sbjct: 685 GGIAAGIRRIEAVTGEAALDAIEAQQAKYEEKLAESAS-----------KAKSLEKEIQK 733 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L+ A + N+ +I V + + DSK L++++D ++ ++ SG++ML Sbjct: 734 LKDKMAAAE-SANIMG-KAQEINGVKVLVAGMEGADSKNLRTMVDDIKNQMGSGVVMLAN 791 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + AI Sbjct: 792 VN-DGKIGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGSDVDALPAAI 849 Query: 890 AGVASFLKK 898 V +L++ Sbjct: 850 QSVQPWLEE 858 >gi|326342881|gb|EGD66649.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. 1125] Length = 840 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/861 (44%), Positives = 539/861 (62%), Gaps = 56/861 (6%) Query: 36 LMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN 95 ++FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGN Sbjct: 1 MLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGN 60 Query: 96 FSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIR 153 FSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ ++IIR Sbjct: 61 FSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIR 120 Query: 154 ITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVF 205 I N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VF Sbjct: 121 IGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVF 180 Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265 MQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 181 MQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL 240 Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L Sbjct: 241 SNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL 298 Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385 + L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D L+G+ Sbjct: 299 VGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGE 357 Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445 AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ I Sbjct: 358 TAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIR 415 Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505 A++F GYD L ++ V A+ G+ V+ Sbjct: 416 VD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAI 447 Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565 +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + G L Sbjct: 448 NAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSL 506 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 + ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ Sbjct: 507 KVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNE 566 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685 + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 567 AMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM---- 622 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L + Sbjct: 623 -GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEV 681 Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE 803 A LK N+ +V + E R+L+ + K Q ++ + K DVN + ++SE Sbjct: 682 AHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSE 741 Query: 804 ---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860 V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L + A Sbjct: 742 LSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVA 800 Query: 861 KVLGGGGGGGRPHMAQSGGPN 881 + + GG GGGRP MAQ+GG + Sbjct: 801 QQV-GGKGGGRPDMAQAGGTD 820 >gi|320354759|ref|YP_004196098.1| alanyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032] gi|320123261|gb|ADW18807.1| alanyl-tRNA synthetase [Desulfobulbus propionicus DSM 2032] Length = 882 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/910 (42%), Positives = 546/910 (60%), Gaps = 53/910 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FLEFF+ GH + +SSL+P +DPTL+FTNSGMV FK +F G+E Y TT Sbjct: 4 NEIRACFLEFFESKGHTRVAASSLVPHDDPTLLFTNSGMVQFKKVFMGEETRPYVRATTA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTK+ LD + Sbjct: 64 QSSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIAYAWEFLTKKLGLDPNK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+++VY++D+EA++LW++I L +I+R+ DNFW+M +TGPCGPCSEI DQG + Sbjct: 124 LWVSVYNDDDEAYRLWERIEDLPKGRIVRMGEKDNFWAMGDTGPCGPCSEIHIDQGAEVG 183 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + + +R++E+WNLVFMQF + LPK SIDTGMGLER+A VLQ K N Sbjct: 184 CGRPDCALGCDCDRFLELWNLVFMQFYRDEHGTMTPLPKPSIDTGMGLERVAAVLQGKFN 243 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N+D DLF +I + G KY N V+ RVI DH R+++FL+ADG+LP+NEGRGYV Sbjct: 244 NFDCDLFTPIIDHVAALAGKKYHENRADDVSMRVIADHARATTFLVADGVLPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALC---TE-MGSAYPELIQAKLLIEETLRSEDE 356 LRRIMRRA+ Y R LG + P +C TE M AYP L + L+ + + +E++ Sbjct: 304 LRRIMRRAIRYGRALGLSS-----FFPGVCALVTELMVHAYPHLGDTRELLAKVVTNEEQ 358 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 RFG+TLD GL L+ + L K E +++GD FKLYDT+G P+DI++DI +G+A Sbjct: 359 RFGETLDHGLNKLEQEIRRLKKAEGERAVIHGDFIFKLYDTYGFPVDIVRDIAIEKGIA- 417 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F QA+E+QR ++R G E L + +FIGY Sbjct: 418 FDEPGFAQAMEQQREQSRKSWKGSDVDHLEAGIIELGSRGLKAEFIGY------------ 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 T+GVS++ + G++V EA +G+ + + QTPFYAE+GGQ+GD G Sbjct: 466 ----------ATTHGVSTVEGIVNASGQLVHEAKAGETLRLFCAQTPFYAESGGQIGDQG 515 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + R ++ EG+ +H + +G L T + L + R ++NH+ATHL Sbjct: 516 EITWEDGRFVVSKTLAPVEGLILHEGQIAQGTLTTGTRVELQV-ADRRTDTALNHTATHL 574 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L A+ +LG HV Q GS + + LRFD TH P+T E+ +IE VN I +N PV T Sbjct: 575 LQAAMKKVLGDHVKQAGSAVDHNRLRFDFTHFSPLTHGEICTIEQLVNAQIRRNTPVDTT 634 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 ++ RE AIA GA AL G KY + VRVV + G S LCGGTH TG+I L IV Sbjct: 635 LLGREQAIAEGATALFGEKYGEEVRVVRI-----GDFSKELCGGTHARMTGDIGLFKIVM 689 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ I AG+RRIEA+TG A + + ++++ L V +++ + + +++L+ Sbjct: 690 ETGIAAGVRRIEAVTGAGAIHWVQELARQANAISAVLSGPLDGAVDKIQGLLKRHKELEK 749 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827 A + + DL +++ M + S V K L+ + D ++ ++QSGII+L Sbjct: 750 QIAALNASMALSDLDQLLASSIELDGMRVVASRVPLDSPKTLREIGDKIRDRMQSGIIVL 809 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E KA++L +V++DL R A DL +A V+ GG GGGRP MAQ+GGP +K D+ Sbjct: 810 GG-EFEGKAALLAMVSKDLTGRIKAGDLVNRAA-VIVGGKGGGRPDMAQAGGPMPDKLDE 867 Query: 888 AIAGVASFLK 897 AI VAS +K Sbjct: 868 AINSVASIIK 877 >gi|30249882|ref|NP_841952.1| alanyl-tRNA synthetase domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|41018196|sp|Q82TF8|SYA_NITEU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|30180919|emb|CAD85841.1| Alanyl-tRNA synthetase:DHHA1 domain [Nitrosomonas europaea ATCC 19718] Length = 863 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/900 (42%), Positives = 556/900 (61%), Gaps = 48/900 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FLEFF+ GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K Y + Sbjct: 4 SEIRQKFLEFFEARGHVIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI AW+ LT + + + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRKAILFAWEFLTGSLGIPREK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+ TVY ED+EA +W G+ +++RI T+DNFW M +TGPCGPCSEIF+D G + Sbjct: 124 LWATVYAEDDEAADIWLNEVGIDPSRLVRIATSDNFWQMGDTGPCGPCSEIFYDHGPAVA 183 Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS + EG+RYIEIWNLVFMQ+ + E LPK S+DTGMGLER+A V+Q+ +N Sbjct: 184 GGPPGSENAEGDRYIEIWNLVFMQYNRDASGELHPLPKPSVDTGMGLERIAAVMQQVHSN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y+IDLF+ LI+A+ +VTG K NN + +VI DH+R+ +FLI DG++P NEGRGYVLRR Sbjct: 244 YEIDLFRSLIEAAARVTGSKDLSNNSL--KVIADHIRACAFLITDGVIPGNEGRGYVLRR 301 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG +P L+ L MG AYPEL +A+ + +R E+ERF +TL+ Sbjct: 302 ILRRAIRHGYRLGQKQPFFYLLVDDLVDVMGPAYPELTRARKHVAGVIRQEEERFAETLE 361 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ +L+ LSH +E L+G++ F+LYDT G P+D+ DI RG+ ID+ F + Sbjct: 362 NGMEVLEAALSH--GNETLSGEIVFRLYDTFGFPVDLTADIARERGIV-IDMAGFETCMA 418 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 +QR RARA G T + L+ T+F GY L + + ++L Sbjct: 419 QQRDRARAS----GKFTMQT---GLEYTGQPTEFHGYATL------QHEAQIL------- 458 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 A+ +QG V+ + + VV DQTPFYAE+GGQ GD+G + + Sbjct: 459 ----------ALYKQGSRVDFIEADDEAVVVLDQTPFYAESGGQAGDSGELLSGSGTFTV 508 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D QK G+F H+ ++ G + ++ +D R + NHSATHLLH AL +LG+ Sbjct: 509 NDTQKIQAGVFGHNGMLSSGRMAIGDRVIARVDQIARTNTAYNHSATHLLHAALRQVLGN 568 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV+Q GS + LRFD +H+ + E++ +E+ VN I +N V T++M +DA+ G Sbjct: 569 HVTQKGSLVDASRLRFDFSHNSAMQENEIRQVENLVNAQIRKNHEVATQLMTYDDAVKQG 628 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRVV++ G S+ LCGGTHVS +G+I IV+ES + AGIRRI Sbjct: 629 AMALFGEKYGDTVRVVAM-----GDFSTELCGGTHVSYSGDIGFFRIVAESGVAAGIRRI 683 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL-N 782 EA+TG A ++ Q+++L+ +A LK + ++ +I + R+++ A + +L Sbjct: 684 EALTGDAALAYTQQQEQQLQQVADALKAAPQEAAQKLSQILDNIRQMEKEIATLRSKLAG 743 Query: 783 VEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 V+ S +I + ++ + V+ K L+ +D + +++S +++L I K+ K ++ Sbjct: 744 VQSTSLIEQAQEIKGIRVLATTLENVNVKTLRETLDNFKNRLKSCVVVLGTIEKD-KVTL 802 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + VT+DL + A DL A+ + GG GGGR MAQ+GG K QA+A V S++++ Sbjct: 803 IAGVTDDLTVKLKAGDLINFVAQQV-GGKGGGRADMAQAGGTLPEKLPQALASVPSWVEQ 861 >gi|53729167|ref|ZP_00134001.2| COG0013: Alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208134|ref|YP_001053359.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae L20] gi|205829968|sp|A3N018|SYA_ACTP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126096926|gb|ABN73754.1| alanyl-tRNA synthetase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 874 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/904 (42%), Positives = 540/904 (59%), Gaps = 56/904 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSEIRQSFLDFFHSKGHTVVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AIQ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKHDAIQFGWEYLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W KI G+ D IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWNKIVGVPTDHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGETFWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + + N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVAGLLNVSDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L T MG A L Q + I++T Sbjct: 299 VPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLATVMGHAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R L Sbjct: 359 LKAEEEQFARTLERGLALLEDALTKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCREREL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F + QR RA+A S G+ I G T FIGYD L Sbjct: 418 T-IDEAGFEAEMTAQRERAKASS-NFGTDYNNVIKVE-----GQTDFIGYDNLEA----- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + G+ V+ SG+ ++ DQT FYAE GGQ+GD Sbjct: 466 ------------------QATIVGLFSNGKAVDTIQSGESAVIILDQTSFYAEMGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + + D QK + +F H + G L + T+ R ++ NHSAT Sbjct: 508 SGLISTEICNFAVNDTQKYGQ-VFGHIGQLTSGSLSIGDKVTATVHATRRIAITANHSAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD + + I+ ++L+ IE VN I +N+ V Sbjct: 567 HLLHSALREVLGDHVAQKGSLVSENILRFDFSQPEAISKSQLEEIERIVNRKIRENIQVT 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A GA AL G KY D VRVV + S LCGGTHV TG+I L + Sbjct: 627 IETMDIESAKKKGAMALFGEKYGDVVRVVGMTE-----FSIELCGGTHVQRTGDIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK- 769 VSE ++ AGIRR+EA+T + A L Q + L+ A FLK ++V +++++ ++ ++ Sbjct: 682 VSEGAVAAGIRRVEAVTAETAIEWLHNQQKVLQQSAEFLKADSNSLVEKIQQLQDKAKRT 741 Query: 770 ---LQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 LQ + K Q E + +KI VN + + V+ K L++++D L+ +++S I+ Sbjct: 742 EKELQQLKDKLAAQAGSELVKQANKINGVNVVVQKLENVEVKSLRTMVDDLKNQLESAIV 801 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + G ++K ++++ VT+DL + NA +L A+ + GG GGGR MA +GG Sbjct: 802 VF-GTVADEKVNLIVGVTKDLSSKVNAGELVGAMAQQV-GGKGGGRADMAMAGGSEPQNL 859 Query: 886 DQAI 889 D A+ Sbjct: 860 DNAL 863 >gi|209519489|ref|ZP_03268284.1| alanyl-tRNA synthetase [Burkholderia sp. H160] gi|209500090|gb|EEA00151.1| alanyl-tRNA synthetase [Burkholderia sp. H160] Length = 874 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/910 (42%), Positives = 547/910 (60%), Gaps = 55/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAESRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L + Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTGVYQLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSEI Sbjct: 122 DKLWVTVYQEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTPLPKQCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LIQA+ + TG+ GNN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQALIQAAGRETGVTDLGNNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL QA+ + + L E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGKKGSFFHRLVADLVAQMGEAYPELAQAEQRVTDVLYQE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 360 EERFFETIENGMSILEAALADLDAKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F++A+ QR +ARA K+ L+ T F GY+ + + +D Sbjct: 419 VDEPAFDEAMARQREQARA-------AGKFKMAQGLEYSGAKTTFHGYE-----EIVFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ G V++ +GQ+ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVV-----------------ALYVDGASVQQVQAGQQAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G L+ + ID R + + NHSATHL Sbjct: 510 VLANASTRFAVVDTLKVQADVVGHHGTLEQGTLKVGDIVKAEIDAMRRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T +++ +E+ VN + N P + R Sbjct: 570 MHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPMTDEQIRRVEEIVNAEVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ +DA+ GA AL G KY D VRV+ + + S LCGGTHV+ +G+I IV Sbjct: 630 VMSYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVNRSGDIGFFKIVM 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ + ++ + A+ LK + R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQELEGRVNAAAAVLKAQPAELTQRIGQVQDQVKALEK 743 Query: 771 QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K K+ + D +I V+ ++ + D K L+ +D L+ K++S I+L Sbjct: 744 ELSALKSKMASSQGDELAGQAVEIGGVHVLAATLEGADVKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 804 ASV-EGGKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPAQLPA 861 Query: 888 AIAGVASFLK 897 A+AGV ++++ Sbjct: 862 ALAGVKAWVE 871 >gi|331006892|ref|ZP_08330140.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC1989] gi|330419292|gb|EGG93710.1| Alanyl-tRNA synthetase [gamma proteobacterium IMCC1989] Length = 877 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/908 (43%), Positives = 545/908 (60%), Gaps = 68/908 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR FL FF+ +GH +L SSSL+P NDPTL+FTN+GMV FK++F G +K YQ T Sbjct: 2 NSADIRDAFLRFFETHGHTVLNSSSLVPNNDPTLLFTNAGMVQFKDVFLGSDKRDYQRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW LT + Sbjct: 62 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHYAWTFLTSPDWMGI 121 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 +L +TVY +D+EA+ LW K GL A+KII I N DNFW+M +TGPCGPC+ Sbjct: 122 PAEKLTVTVYADDQEAYDLWHKDIGLPAEKIIHIGDNKGGKYQSDNFWAMGDTGPCGPCT 181 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GGLPG+ EE G+R+IEIWN+VFMQF + LPK S+DTGMGLER Sbjct: 182 EIFYDHGEDIWGGLPGTPEEDGDRFIEIWNIVFMQFNRSADGSMAPLPKPSVDTGMGLER 241 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ V+Q NNYDIDLF+HL+ AS +TG + + + RVI DH+RS +FLI DG++P Sbjct: 242 ISAVMQGVHNNYDIDLFQHLLNASATITGAQNTEHKSL--RVIADHIRSCAFLIIDGVMP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG + L+ AL MG+AYPELI+ + IE+ L Sbjct: 300 SNEGRGYVLRRIIRRAVRHGHKLGQQQAFFYQLVSALVEIMGTAYPELIKQQKHIEKVLL 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSH----LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E+++F KTL++GL +L+ VL + G+ F LYDT+G P D+ DI R Sbjct: 360 LEEQQFEKTLEKGLSVLESVLDSAEFTASASTQIPGETIFTLYDTYGFPTDLTNDIARER 419 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L +D+ + + +E QR+RARA +G + S E G+TQF GYD + Sbjct: 420 ELT-LDMPGYEKCMEAQRTRARA------AGKFSVDYSSSVELEGSTQFSGYDSV----- 467 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 NG +I+ + Q V+ G + +V T FYAE+GGQ+ Sbjct: 468 -----------------NGEGNII-GLYQNAIPVDTLKEGDEGVIVLSNTSFYAESGGQI 509 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS----LVLTIDYQNRRQLS 584 GD+G + DG ++ D QK HH + + +L E S + +D R+ Sbjct: 510 GDSGYIVFDGGHFEVQDCQKNGS----HHLHIGK-VLSGEFSVGNGVSTRVDSDVRQATV 564 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 +NHSATHL+H AL ILG HV Q GS + + LRFD +H + ++ EL IE VND I Sbjct: 565 LNHSATHLMHAALRKILGEHVVQKGSLVDSEKLRFDFSHLQALSGDELARIETMVNDEIR 624 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N V + E A A GA L KY D VRV+S+ G S LCGG HV TG+ Sbjct: 625 HNTTVAVDHCDMEQAKAKGAMMLFDEKYGDEVRVLSM----GDGFSIELCGGVHVQQTGD 680 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + +IV+ES I +G+RRIEA+TG++A S L+ + +A +K + N V ++E++ Sbjct: 681 IGVFHIVAESGIASGVRRIEAVTGKKALSRLLSYKQSTDQIAQLVKANSSNAVEKIEQLV 740 Query: 765 EEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + ++ + A + +L D + +IA VN ++H + + D K L+ + DAL+ + Sbjct: 741 VQLKEQEKAIASMQAKLASADSGDLLKNIKQIAGVNVLAHHVVDGDGKILRDMADALKSQ 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +++ + +LV ++ K S+L VT+DL +F A DL R A ++ GG GGGRP MAQ GG Sbjct: 801 LENSVYLLV-TNQGDKVSLLAGVTKDLTAQFKAGDLMREVAPLV-GGKGGGRPDMAQGGG 858 Query: 880 --PNGNKA 885 P G +A Sbjct: 859 TDPTGIQA 866 >gi|239996387|ref|ZP_04716911.1| alanyl-tRNA synthetase [Alteromonas macleodii ATCC 27126] Length = 865 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/901 (44%), Positives = 553/901 (61%), Gaps = 48/901 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + +R F+++F+ +GH+ + SSSL+P +DPTL+FTN+GM FK+ F G EK Y Sbjct: 4 STADLRNKFIDYFKSHGHQAVASSSLVPADDPTLLFTNAGMNQFKDCFLGAEKRSYTRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE L + Sbjct: 64 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIEFAWNFLTKEIGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TVY ED+EAF +W+ G+ +KIIRI+T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 124 EKLLVTVYSEDDEAFDIWENHIGVPKEKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGAH 183 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PG+ EE G+R+IEIWNLVFMQF +Q LPK SIDTGMGLER++ +LQ Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNKQADGTMEPLPKPSIDTGMGLERISAILQNVH 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+IDLF++LI+++ + G + N + RVI DH+RS SFLI DG++P+NEGRGYVL Sbjct: 244 SNYEIDLFQNLIKSAASIVGSEDLENKSL--RVIADHIRSCSFLICDGVMPSNEGRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG + L+ +L EMG AYPEL+ +IE+ LR E+E+F KT Sbjct: 302 RRIIRRAVRHGYQLGANDIFFYKLVASLAKEMGEAYPELVDQLPVIEKVLRVEEEQFSKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG+ +L+ L L D + GDV FKLYDT+G P D+ D+ L ID F A Sbjct: 362 LARGMAILNDTLETLEGDTV-PGDVVFKLYDTYGFPTDLTNDVAREHDLK-IDEEGFEAA 419 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++ QR+RA+ S G+ K+ T F GY + G Sbjct: 420 MQAQRARAQQAS-NFGADYNSKLAID-----HTTSFTGYTDVEGQ--------------- 458 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 +++V+ I VE+ GQ+ VV D TPFYAE+GGQ GD G Sbjct: 459 -------ANVVELIADNA-FVEKLEDGQEGVVVLDSTPFYAESGGQAGDKGVLRVANGEF 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +TD QK F H I +G + + ID NR + NHSATHLLH AL IL Sbjct: 511 IVTDTQKMGNA-FAHKGIA-KGSVSKGDTATAAIDAANREAIKKNHSATHLLHAALREIL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV+Q GS + +RFD +H + +T+ +L IE VN I N + T +M+ ++A A Sbjct: 569 GEHVTQKGSLVEAPRMRFDFSHFEAVTAEQLAEIERRVNQEIRANHTLATELMDLDEAKA 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL G KY+++VRVV++ G S LCGGTHV+ TG+I L I SE+ I +G+R Sbjct: 629 SGAMALFGEKYDEKVRVVTM-----GPFSVELCGGTHVTRTGDIGLFKITSEAGIASGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKL 779 RIEA+TG+ A + Q L SL++ LK NV+ RV + + ++L+ L AK+KL Sbjct: 684 RIEAVTGEHALEVVQTQQATLSSLSALLKTDSQNVLDRVVSLQNQTKELEKALNSAKQKL 743 Query: 780 --QLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 Q + LS +I V + + V++K L+S+MD ++ +I GI++L G++ + K Sbjct: 744 ASQQGADMLSNAVEINGVKVLIANLEGVEAKSLRSMMDDIKNRIGEGIVVL-GVANDAKV 802 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +++ VT++L + A +L A + GG GGGRP MAQ+GG QA+ V ++L Sbjct: 803 NLIAGVTKNLTSKVKAGELVNFVASQV-GGKGGGRPDMAQAGGDQPENLGQALDSVNAWL 861 Query: 897 K 897 + Sbjct: 862 Q 862 >gi|238897262|ref|YP_002922939.1| alanyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465017|gb|ACQ66791.1| alanyl-tRNA synthetase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 875 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/904 (44%), Positives = 555/904 (61%), Gaps = 56/904 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ + IR FL+FF+ GH+++ SSSLIP +DPTL+FTN+GM PFKNIF G + P + Sbjct: 3 NSTADIRQKFLDFFKSKGHQVVSSSSLIPHHDPTLLFTNAGMNPFKNIFLGIQDPDFSRA 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFD 119 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI AW+LLT + F Sbjct: 63 TSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQQAIYFAWELLTGSEWFH 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPC 172 L + RLY+TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPC Sbjct: 123 LPKDRLYVTVYSTDDEAYNIWADEIGIPRERIIRIGDNKGAAFCSDNFWQMGETGPCGPC 182 Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D G+ + GGLPGS EEG+RYIEIWN+VFMQF + LPK S+DTGMGLE Sbjct: 183 SEIFYDHGDHLWGGLPGSPEEEGDRYIEIWNIVFMQFNRLADGTMLPLPKPSVDTGMGLE 242 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 RMA VLQ ++NY+IDLF+ LI ++VTG + N + RVI DH+R+ +FLI DG+ Sbjct: 243 RMAAVLQNVSSNYEIDLFRDLISGVKKVTGATDDSNPSL--RVIADHIRACAFLIFDGVR 300 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ + LG +P LL +L M +L +++IE+ L Sbjct: 301 PSNEGRGYVLRRIIRRAIRHGNKLGVKKPFFYQLLTSLIGVMKPITDQLKHHQVMIEQVL 360 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++E+E F TL+RGL LLD L HL K + L G+ AF LYDT+G PLD+ D+ R L Sbjct: 361 KTEEELFSHTLERGLSLLDKKLDHL-KGDTLEGETAFLLYDTYGFPLDLTADVCRERNLK 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID ++F+Q + EQR+RAR S + +T+ F + T+F GY+ L+ Sbjct: 420 -IDEVTFHQKMSEQRARARQAS----AFSTDYNKFIRVAHH--TEFCGYEQLQQ------ 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++++KA+ +GE + E +GQ+ V+ D+TPFYAE+GGQ+GD Sbjct: 467 -----------------TTVIKALFFRGEEINEIHAGQEALVILDKTPFYAESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++D QK + I VH +G LR + ++ + R + NHSATH Sbjct: 510 GYLKSTTAHFMVSDTQKYGQAI-VHLGQPSKGSLRISDHIQACVNNKVRDHIRSNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + RFD +H K +T E++++E VN I QN + T Sbjct: 569 LLHAALRQVLGKHVVQKGSLVNEKCCRFDFSHFKMMTPDEIENVESLVNQQIRQNHLIET 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +IM+ EDA GA AL G KY D+VRV+S+ G S LCGGTH TG+I L +I Sbjct: 629 QIMSLEDAKKKGATALFGEKYEDQVRVLSM-----GDFSIELCGGTHARRTGDIGLFHIT 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SESS AGIRRIEAITG+ A + L Q L+ LA LK + ++ R+ I + + L+ Sbjct: 684 SESSTAAGIRRIEAITGEEANALLCQQRNVLQDLARLLKSDEKGLIERIGIIIDRNKVLE 743 Query: 772 --LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIM 826 L H K + L L + + + +I+++D+ E L+ ++D L+ ++ S +I+ Sbjct: 744 KKLQHFKDQEILQKTSLLLKNVKQIKEIKILIAQLDAVEPILLRRMIDDLKNQLGSAVIL 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++K K S + VT++L + A DL A + GG GGGR MAQ+GG N N Sbjct: 804 LANVTK-NKISFIAGVTKNLTQQIKADDLIHYIAPKI-GGKGGGRADMAQAGGTNINSLA 861 Query: 887 QAIA 890 +A Sbjct: 862 TVLA 865 >gi|332184146|gb|AEE26400.1| Alanyl-tRNA synthetase [Francisella cf. novicida 3523] Length = 865 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/901 (42%), Positives = 536/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKRDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI + DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PIEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSTDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QV + N + RVI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVINAR--DINSPSLRVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG + L+ L +MG AYP+LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAVRHGNKLGANQIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L K + ++G+VAFKLYDT+G P D+ D+ +GL +D F Sbjct: 359 KTIENGIKIFDAEIENL-KGDTVSGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQVFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + +L ++F GY L ED KVL Sbjct: 417 AQMQVQKQRSKE------AGKFNVDYNTLINSQVKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I ++V+ VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYHDSQLVDSITEEASAVVVLDKTPFYAESGGQVGDKGVLEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFIVEDVQKSGEAI-LHIGKLVKGRLNVNDELTAQVSDQPRLATAANHSATHLLHKALKV 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSH Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 ILGSHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVATIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SES I +G Sbjct: 627 KSLGAQALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISESGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + AK K Sbjct: 682 IRRIEAVTADKAIRHTFTNENKIVAIKDSLKANDANLIDKLKSMLEQIKNQDKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L+ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRDKIDDYKSK-NTKVIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ + A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNAMTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|319786629|ref|YP_004146104.1| alanyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1] gi|317465141|gb|ADV26873.1| alanyl-tRNA synthetase [Pseudoxanthomonas suwonensis 11-1] Length = 882 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/909 (44%), Positives = 553/909 (60%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR+ FLEFF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 TTARIRSDFLEFFKDKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIAWAWELLTGVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ +W+ G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYHTDDEAYGIWRDQIGVPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FYDHGEHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF+ LI+ + +TG N + RVI DH+R+SSFLI DG+LP+N Sbjct: 248 AILQHVHSNYEIDLFQALIRKAAALTGTPDLENKSL--RVIADHIRASSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P L+ L +MG AYPEL A+ ++ L++E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFHQLVDELVAQMGEAYPELPAARDTVQRALKAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V +H ++ G AF+LYDT+G PLD+ QDI RGL +D Sbjct: 366 EERFAETLDAGMKIFEDVAAH-AAGAVIPGVDAFRLYDTYGFPLDLTQDIARERGLT-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E+QR ARA G G ++ L T F+GYD L ++ MK Sbjct: 424 VAGFEAAMEQQRETARAAG-KFGGGV--QLPAELVATLEPTVFLGYDALE-AEGMK---- 475 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A++ G V+ SG++ V+ D+TPFYAE+GGQ+GDTG Sbjct: 476 -----------------VVALLHDGRPVDSVASGEEAIVLLDRTPFYAESGGQVGDTGVL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+G +LQ+ D QK A H V G L+T L +D + RR + +NHSATHLLH Sbjct: 519 EGEGAKLQVGDTQKFAGQFHGHFVRVAEGGLKTGQLLRGAVDGERRRAIVLNHSATHLLH 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +P+ + E+ IE VND + N VV + M Sbjct: 579 GALRGLLGTHVQQKGSLVAPDRLRFDFSHFQPVNAEEVARIERMVNDEVRANHAVVIQQM 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY +RVRVV + S LCGGTHV+ TG+I L IVSE Sbjct: 639 GIQEALDLGAMALFGEKYGERVRVVKMG------ESVELCGGTHVARTGDIGLFKIVSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+TGQ A H+ + L AS L S+G VV R + E RKL +L Sbjct: 693 GVSAGVRRIEALTGQAALEHIAAEGRALDEAASLLGGSRGEVVERARAVAERIRKLEREL 752 Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K + DV+ ++ + +D+K L+ +D L++++ +++L G Sbjct: 753 ESIKAKAASSAAADLAGSAVDVSGIKVLAARLEGIDAKGLREAVDRLKQQLGDTVVLLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 -AQGGKVALVAGVNGAATGKVKAGELLAHVAGRI-GGKGGGRPDLAQGGGEDGPALAPAL 870 Query: 890 AGVASFLKK 898 A V +++ + Sbjct: 871 ADVPAWVAE 879 >gi|260913378|ref|ZP_05919859.1| alanine-tRNA ligase [Pasteurella dagmatis ATCC 43325] gi|260632609|gb|EEX50779.1| alanine-tRNA ligase [Pasteurella dagmatis ATCC 43325] Length = 874 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/914 (43%), Positives = 553/914 (60%), Gaps = 60/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MKTTAEIRQSFLDFFHTKGHQIVESSSLVPENDPTLLFTNAGMNQFKDVFLGMDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHFGWEYLTSPRWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +L++TVY+ D+EA+ +W K G+ A++I+RI N DNFW M +TGPCGP Sbjct: 121 GLPKEKLWVTVYETDDEAYNIWNKEVGVPAERIVRIGDNKGAPYASDNFWQMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGL Sbjct: 181 CTEIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ VLQ +NY+ID+F+ LI ++TG K N + RV+ DH+RS ++LIADG+ Sbjct: 241 ERISAVLQHVNSNYEIDIFQKLIAKVAELTGEKDLTNKSL--RVVADHIRSCAYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG E L+P L M SA ++ + + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGNLLGAKEAFFYKLVPTLIEAMASAGIQVKEKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L+ + KD L+G VAFKLYDT+G P D+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLTLLDEALNQV-KDNELSGKVAFKLYDTYGFPFDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F + +E QR RA++ S G+ ++ G T F GY Sbjct: 418 T-IDEAGFEREMEAQRLRAQSASQFGMDYNNVIRM-------DGVTVFEGY--------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + L + V A+ +G+ VE +GQ ++ D TPFYAE+GGQ+G Sbjct: 461 -TESETLAK-------------VTALFCEGKPVERVEAGQSAVIILDNTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G G ++ D QK +F H V G L + +D + R + S+NHSA Sbjct: 507 DAGRLDGQDFAFEVEDTQKYGR-VFGHIGKVTIGSLAIGQLVNAVVDVERRHRTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG+HV Q GS ++ LRFD H + IT +L IE VN I N + Sbjct: 566 THLLHAALRQVLGTHVVQKGSLVSDVALRFDFAHPEAITKEQLIEIERVVNQQIRANHVI 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ E A A GA AL G KY D+VRV+++ G S LCGG H TG+I L Sbjct: 626 QTEIMDLEAAKAKGAMALFGEKYADQVRVLTM-----GDFSIELCGGIHAKRTGDIGLCK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 +++E++I AG+RRIEAITG+ A + L Q L A LK ++V ++ + E+ +K Sbjct: 681 VIAETAIAAGVRRIEAITGENAITWLQEQQALLAQSAELLKSDVNSIVDKINQQQEKLKK 740 Query: 770 L--QLIHAKRKLQLNV-EDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSG 823 +L+ K K+ + DL+ + I ++N +S II + VDSK L+ ++D L+ ++ S Sbjct: 741 TEKELLSLKEKVAVQAGSDLAKNAI-NINGVSVIIQQLNGVDSKSLRVMVDDLKNQLGSA 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +I + E K ++++ V+ DL + A +L + A+ + GG GGGRP MA +GG Sbjct: 800 VIAFASVI-EGKVNLIVGVSNDLTAKVKAGELVNVLAQEV-GGKGGGRPDMAMAGGTQVE 857 Query: 884 KADQAIAGVASFLK 897 K QA+ + +LK Sbjct: 858 KVSQALLVGSEWLK 871 >gi|28899322|ref|NP_798927.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633] gi|153839216|ref|ZP_01991883.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810] gi|260878987|ref|ZP_05891342.1| alanine--tRNA ligase [Vibrio parahaemolyticus AN-5034] gi|260895460|ref|ZP_05903956.1| alanine--tRNA ligase [Vibrio parahaemolyticus Peru-466] gi|260903524|ref|ZP_05911919.1| alanine--tRNA ligase [Vibrio parahaemolyticus AQ4037] gi|31076994|sp|Q87LR3|SYA_VIBPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28807546|dbj|BAC60811.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus RIMD 2210633] gi|149747281|gb|EDM58267.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus AQ3810] gi|308088224|gb|EFO37919.1| alanine--tRNA ligase [Vibrio parahaemolyticus Peru-466] gi|308090433|gb|EFO40128.1| alanine--tRNA ligase [Vibrio parahaemolyticus AN-5034] gi|308108704|gb|EFO46244.1| alanine--tRNA ligase [Vibrio parahaemolyticus AQ4037] gi|328474145|gb|EGF44950.1| alanyl-tRNA synthetase [Vibrio parahaemolyticus 10329] Length = 860 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/912 (42%), Positives = 550/912 (60%), Gaps = 73/912 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTDVLKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R A I Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR + G+ I + T+F GY +G Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGQFGTDYNAAIKVDTQ-----TEFCGYVGTKG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 SS V A+ +G V+ +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ---------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAGE 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ++ D QK I HH ++ G+L + +D + R +S+NHSATHLL Sbjct: 511 IRTEAGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AELK +E VN I +N + T + Sbjct: 570 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETNV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 S I AGIRRIEA+TG+ A + Q +EKL A + + + +E +K Sbjct: 685 SGIAAGIRRIEAVTGEAALDAIEAQAAKYEEKLAESAQ-----------KAKTLEKELQK 733 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826 L K K+ K +VN +++ + DSK L++++D ++ ++ SG+++ Sbjct: 734 L-----KDKMAAAESANIMGKAVEVNGTKVLVAALEGADSKNLRTMVDDIKNQMGSGVVL 788 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 789 LANVT-DDKVGLIAGVTKDLVGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVSALP 846 Query: 887 QAIAGVASFLKK 898 +AI V +L++ Sbjct: 847 EAIKTVQPWLEE 858 >gi|148978178|ref|ZP_01814708.1| alanyl-tRNA synthetase [Vibrionales bacterium SWAT-3] gi|145962600|gb|EDK27876.1| alanyl-tRNA synthetase [Vibrionales bacterium SWAT-3] Length = 860 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/916 (42%), Positives = 547/916 (59%), Gaps = 81/916 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIAFAWEFLTETLQLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+I+RI +DNFW+M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIVRIGDKEGGKQFESDNFWTMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK ++DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ + G YE + + RVI DH+RS SFLIADG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAETIG--YEDLSNQSLRVIADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 362 EEENFGRTLERGMVILNEALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F +A+E QR RAR A G T K+ + T+F GY G Sbjct: 420 DEAGFEKAMEVQRQRAREAGQFGTDYNATIKVETN-------TEFCGYTGTEG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + A+ +GE V +G K ++ ++TPFYAE+GGQ GDTG Sbjct: 466 ----------------AGEISALFVEGEEVASLSAGDKAIIILEETPFYAESGGQCGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK F HH + G+ + T+D + R +S+NHSATHL Sbjct: 510 TLKTASGLFKVEDTQKLGNA-FAHHGELVEGVFAKGDKVEATVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD ++ + +T A++K +E VN + +N + T Sbjct: 569 LHAALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 E I AGIRRIEA+TG+ A + Q +EKL A K + + Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEEKLAESAKKAKALE--------------K 729 Query: 769 KLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++QL+ K + VE++S K+ + I D+K L++++D + ++ S Sbjct: 730 EIQLLKEKMAAAESANIMGKVEEISGTKV-----LVAAIEGADNKNLRTMVDNAKNQVGS 784 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 GII++ ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 785 GIILIANVA-DGKVGLIAGVTKDLIGKVKAGDLVKMVAEQI-GGKGGGRPDMAQAGGTDV 842 Query: 883 NKADQAIAGVASFLKK 898 +A+ V ++L++ Sbjct: 843 EALPEALKSVRTWLEE 858 >gi|296133407|ref|YP_003640654.1| alanyl-tRNA synthetase [Thermincola sp. JR] gi|296031985|gb|ADG82753.1| alanyl-tRNA synthetase [Thermincola potens JR] Length = 884 Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/899 (42%), Positives = 566/899 (62%), Gaps = 46/899 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK +F G ++ Y+ TT Sbjct: 4 NEIREKFLKFFENKGHTIIASSSLVPHDDPTLLFTNAGMNQFKEVFLGLDRRPYKRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK AI AW LT+E L + R Sbjct: 64 QKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKREAITYAWQFLTEELGLPKDR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY TVY +DEEA +LW++I+GL +++IR+ DNFWSM +TGPCGPCSE+ D+GE Sbjct: 124 LYATVYRDDEEAAQLWQEIAGLPPERVIRLGEKDNFWSMGDTGPCGPCSEVLIDRGEEFK 183 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 C + + +R++EIWNLVFMQ+ + E LPK SIDTGMGLER+A+V+Q+ Sbjct: 184 CAADNCAIGACDCDRWLEIWNLVFMQYNRDESGEMTPLPKPSIDTGMGLERIASVMQKVN 243 Query: 242 NNYDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +N+D DLFK ++ E+++G + Y+ RVI DH R+ +FLI+DG+LP+NEGRGYV Sbjct: 244 SNFDTDLFKPIMAKVEELSGSVYYQDERGFPFRVIADHARACTFLISDGVLPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + ++LG +P + ++ + MG AYPE+ + + +E+ ++ E+ERF + Sbjct: 304 LRRILRRAVRFGKVLGIEKPFLYQMVGVVADLMGDAYPEIREKQTYVEQVIKIEEERFHE 363 Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL G+ L+ ++ + + + ++G AF LYDT+G PLD+ +DI GL +D F Sbjct: 364 TLHEGMRLVSDIVEKVKAEGRQSISGQEAFLLYDTYGFPLDLTEDIAEEHGLT-VDKDGF 422 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 A+EEQR+RARA ++++ + +K GAT+F GY L E R Sbjct: 423 AAAMEEQRTRARAARQDEAMLAGQELYAEVGQKLGATEFTGYSEL-------ETR----- 470 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD- 537 +++V IV + E E +G++VEV+ D+T FY E+GGQ+GD G + Sbjct: 471 ----------ANVVALIVDK-EFRHEVRAGEQVEVIMDRTCFYGESGGQVGDRGILESNR 519 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G +++TD +K G+ VH VE+ I+ + +D + R+Q++ NHS THLLH AL Sbjct: 520 GAVIKVTDTKKTFNGLMVHLGTVEKDIVSFGDVMDARVDARRRKQIARNHSVTHLLHKAL 579 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV+Q GS + P+ LRFD TH + +T EL+ +ED VN++I NL V + + Sbjct: 580 KEVLGDHVNQAGSLVEPERLRFDFTHFRAVTPEELQKVEDRVNEMILANLDVHAFETSLD 639 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA AL G KY ++VRVV + G +S LCGGTH+ STGE L I+SES I Sbjct: 640 EAKALGATALFGEKYGEKVRVVKM-----GDYSMELCGGTHLRSTGEAGLFKILSESGIG 694 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI----WEEYRKLQLI 773 AG+RRIEA+TG+ ++ Q+ +LK +A +K S VV RVE I E+ ++L+ + Sbjct: 695 AGLRRIEAVTGEGTLRYIAEQEARLKDIARLVKSSPAEVVKRVENIVDNLREKEKELEQL 754 Query: 774 HAK--RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 A+ R+ N+ D ++A ++ D L+ + D L+ K+ SGI++L G + Sbjct: 755 QARLAREESQNLMD-KVKEVAGAKVLAVPTGAPDMDALRHMGDMLRDKLGSGIVVL-GAT 812 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K + + +VT+DL+ + +A ++ + A+V GGGGGGRP MAQ+GG + K + A+ Sbjct: 813 LGDKVNFVAMVTKDLVAKGAHAGNIIKEVARV-AGGGGGGRPDMAQAGGKDPAKLEAAL 870 >gi|319779380|ref|YP_004130293.1| Alanyl-tRNA synthetase [Taylorella equigenitalis MCE9] gi|317109404|gb|ADU92150.1| Alanyl-tRNA synthetase [Taylorella equigenitalis MCE9] Length = 874 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/909 (43%), Positives = 561/909 (61%), Gaps = 55/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FF+ H ++ SS LIP NDPTL+FTN+GMV FK++F G+EK Y TT Sbjct: 4 SEIRHNFLKFFESKNHTIVSSSPLIPANDPTLLFTNAGMVQFKDVFLGKEKRTYSRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+LLT F L + + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAITYAWELLTTVFQLPKEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +TVY ED+EAF +W+ G+ +KIIRI N DNFW M +TGPCGPC+EIF+ Sbjct: 124 LLVTVYAEDDEAFGIWRDKVGVPEEKIIRIGDNKGSRYASDNFWQMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS EE G+R+IEIWNLVFMQFE+ ++ LPK +DTGMGLER+A V Sbjct: 184 DHGPEIWGGPPGSPEEDGDRFIEIWNLVFMQFERDSEGVLHPLPKPCVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLFK+LI+A+ T NN + +VI DH+R+ SFLI DG++P NEG Sbjct: 244 LQHVHSNYEIDLFKNLIKAAAVATNTSDLENNSL--KVIADHIRACSFLICDGVIPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG + L+PAL EMG A+PELI+ + I L+ E++ Sbjct: 302 RGYVLRRIIRRALRHGHKLGQNKTFFHTLVPALTKEMGEAFPELIEWQDRISSILKQEED 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF +TLD G+ +L+ LS+L K + ++G F LYDT+G P+D+ DI RG+ G+D+ Sbjct: 362 RFQETLDHGMKILESCLSNLEKGQNIDGQTLFILYDTYGFPVDLTADIARERGV-GVDLD 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F +A+++Q+ ARA SG K +L T F GY+ L S+ Sbjct: 421 GFEKAMDKQKETARA------SGKF-KAQENLSYSGTDTSFSGYEHLVESR--------- 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++AI G VE A GQ+V VV D+TPFYAE+GGQ+GD+G IG Sbjct: 465 -------------ANIQAIYVDGASVESADEGQEVVVVLDRTPFYAESGGQVGDSGFLIG 511 Query: 537 DGI--RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 ++ I+D +K +F H+ VE+G ++ S+ ++ +NR ++ +HS THL+H Sbjct: 512 SDTDKQVSISDTRKITPTVFGHYGRVEKGSIKLNDSVDAIVNAENRVLVTAHHSVTHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD +H+ P+T E++ +E VN+ I +M Sbjct: 572 LALREVLGDHVKQKGSLVDSEKTRFDFSHNSPMTEEEIRKVELLVNNQILMGRDTYVEVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 +DA+ SGA L G KY D VRV+ + S LCGGTHVS+TG+I L I+SES Sbjct: 632 PYDDALKSGAIGLFGEKYGDFVRVMQIG------DSRELCGGTHVSNTGQIGLFKIISES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + +G+RRIEA+ G +A + + A+ LK S ++V +++ ++ L ++ Sbjct: 686 GVASGVRRIEAVAGFKALEWIQNTYRVINQSANLLKSSPKDLVSKIKIQIDQISALEKEI 745 Query: 773 IHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 H K+KL + DL S +++ + ++ + +V++K L+ ++D ++ K+ SG++ + Sbjct: 746 THLKQKLISASSGDLLSSLKEVSGIKTLACEVKDVETKALRDLVDQMKSKLGSGVVAIFL 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K ++ VT+DL + A DL +++L GG GGGRP MA GG +AI Sbjct: 806 VEGD-KVTIATGVTKDLTHKLKAGDLVSRLSQIL-GGKGGGRPDMAMGGGTKVEDLQKAI 863 Query: 890 AGVASFLKK 898 V +++K+ Sbjct: 864 LDVEAWVKE 872 >gi|300692180|ref|YP_003753175.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07] gi|299079240|emb|CBJ51912.1| alanyl-tRNA synthetase [Ralstonia solanacearum PSI07] Length = 880 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/916 (42%), Positives = 545/916 (59%), Gaps = 59/916 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 2 KASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 62 SVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY D+EA+ +W K+ GLS ++++RI N DNFW MA+TGPCGPCSEI Sbjct: 122 EKLWATVYHNDDEAYDIWTKVIGLSPERVVRIGDNKGAPYASDNFWQMADTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMG 229 F+D G + GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGMG Sbjct: 182 FYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPQTGEYTLTPLPAPCVDTGMG 241 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289 LER+A +LQ +NY+IDLF+ L+ A+ + T K NN + RVI DH+R+ SFLI DG Sbjct: 242 LERLAAILQHVHSNYEIDLFQALVGAAARETNTKDLANNSL--RVIADHIRACSFLIVDG 299 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 ++P NEGRGYVLRRI+RRA+ + LG L+ L T+MG AYPEL +A+ + + Sbjct: 300 VIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVEDLVTQMGEAYPELREARDRVVD 359 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407 LR+E+ RF +T++ G+ +LDG L L ++L+G++AFKL+DT+G PLD+ QD+ C Sbjct: 360 VLRTEEARFFETIEHGMSILDGALGELKATGGKMLDGELAFKLHDTYGFPLDLTQDV-CR 418 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +D +F+ A+ QR +ARA +G + SL T F GYD L Sbjct: 419 ENDVIVDEAAFDAAMNRQREQARA------AGKFKMAAGSLDYTGDKTTFHGYDQLLSE- 471 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 +S V A+ G V+E GQ VV D TPFYAE+GGQ Sbjct: 472 ---------------------TSRVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGGQ 510 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G + + D QK +F HH + G+L+ ++ +D R + NH Sbjct: 511 VGDEGTLKAATVWFDVADTQKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRNH 570 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+H AL +LG+HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 571 SATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEILANA 630 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 ++M +DA+ SGA AL G KY D VRV+++ S LCGGTHV+ TG+I L Sbjct: 631 STGAQMMGFDDAVKSGAMALFGEKYGDEVRVLTIG------SSKELCGGTHVARTGDIGL 684 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 685 FKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRISEAAAALRAQPSELTQRIVQVQDQV 744 Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +L K KL D + DV ++ + D+K L+ MD L+ K+++ Sbjct: 745 KSLEKELERLKSKLASAQGDELAEQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLKT 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I+L +S E K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 805 AAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEP 862 Query: 883 NKADQAIAGVASFLKK 898 +K QA+AGV +++++ Sbjct: 863 DKLPQALAGVTAWVQQ 878 >gi|149378261|ref|ZP_01895973.1| alanyl-tRNA synthetase [Marinobacter algicola DG893] gi|149357458|gb|EDM45968.1| alanyl-tRNA synthetase [Marinobacter algicola DG893] Length = 876 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/913 (43%), Positives = 566/913 (61%), Gaps = 60/913 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL++F++ GH ++PSSSL+P +DPTL+FTN+GM FK++F G+EK Y TT Sbjct: 3 TAELRQAFLDYFKQQGHTIVPSSSLVPADDPTLLFTNAGMNQFKDVFLGREKRDYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT + L Sbjct: 63 TQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTGDDWLKLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L++TVY D+EAF +W + G+ AD+I+RI N DNFW M +TGPCGPC+E Sbjct: 123 KEKLWVTVYASDDEAFDIWNQEVGVPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS EE G+RYIEIWN+VFMQ+ +Q E LPK S+DTGMGLER+ Sbjct: 183 IFYDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRQADGEMLPLPKPSVDTGMGLERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 VLQ +NY+IDL + L+ A+ + G + RV+ DH+RS +FLI+DG++P+ Sbjct: 243 TAVLQGVHSNYEIDLMQDLLNAASDILGGVE--TTEASLRVVADHIRSCAFLISDGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRG+VLRRI+RRA + LG T+P L AL MG A+P+L+ ++ IE+ L Sbjct: 301 NEGRGFVLRRIIRRAARHGNKLGATQPFFHKLTGALVELMGDAFPQLVSSRKQIEKVLLQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTLD+GL LL+ ++ L EI GD F LYDT+G P+D+ DI RGL + Sbjct: 361 EEEQFAKTLDKGLRLLEQDIAALESSEI-PGDTIFTLYDTYGFPVDLTNDIARERGLT-L 418 Query: 414 DIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D + +A+E QR RARA S G+ +++ G+T+F GY+ + G + Sbjct: 419 DYDGYEKAMERQRERARAASKFGMDYNAA---GLNIE---GSTEFTGYEHIDGHE----- 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ ++ GE + A +G + +V ++TPFYAE+GGQ+GDTG Sbjct: 468 ------------------TIRTVIVGGE-EKAAQAGDEAILVLERTPFYAESGGQVGDTG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G R ++TD QK+ +H V G L + + ID+ R + NHSATHL Sbjct: 509 LLTWSGGRFKVTDTQKEGSN-HLHIGTVIEGELFPGLEVDARIDHARRERTKKNHSATHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG HV+Q GS + PD LRFD +H + +T +L+ IE VN+ I N PV T Sbjct: 568 MHAALRNVLGEHVTQKGSLVDPDKLRFDFSHFEAVTPEQLREIERQVNEQILDNTPVETE 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 I + E A A GA AL G KY D VRV+S+ + +S LCGGTHV+ TG+I L I S Sbjct: 628 ITDMEQAQAKGAMALFGEKYGDTVRVLSMGSD---AYSVELCGGTHVARTGDIGLFRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I +G+RRIEA+TG A + ++ L+ A +K S+ ++V +V++ + R+L+ Sbjct: 685 ESGISSGVRRIEAVTGFGALEWVEETEQTLREAAKLVKGSRESLVEKVQQALDRNRQLEK 744 Query: 773 -IHA-KRKLQLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVM---DALQKKIQSGIIM 826 I+A + KL + DL+ + DV + + SE++ + K++M D L+ K+ G+++ Sbjct: 745 DINALQAKLASSAGTDLASSAV-DVAGLKVVASEMEGADRKALMETADQLKNKLGEGVVV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L + ++ K +++ VT+ R A DL + L+A+V G GGGRP MAQ GG + +K Sbjct: 804 LASV-EDGKVTLVAGVTKSATGRVKAGDLMKHLAAQV--DGKGGGRPDMAQGGGNDPSKL 860 Query: 886 DQAIAGVASFLKK 898 A+AGV ++++K Sbjct: 861 ADALAGVPAWVEK 873 >gi|53802423|ref|YP_112920.1| alanyl-tRNA synthetase [Methylococcus capsulatus str. Bath] gi|59798499|sp|Q60BS6|SYA_METCA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|53756184|gb|AAU90475.1| alanyl-tRNA synthetase [Methylococcus capsulatus str. Bath] Length = 867 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/905 (41%), Positives = 548/905 (60%), Gaps = 56/905 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF GH ++ SSSL+P NDPTL+FTN+GMV FK++F G+E Y + Sbjct: 4 AELRARFLKFFADRGHTVVASSSLVPVNDPTLLFTNAGMVQFKDVFLGREHRPYVRAASA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+ L R Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIVYAWEFLTEVLMLPPER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+ITVY ED+EA ++W + G+ + RI T+DNFWSM +TGPCGPCSEIF+D G + Sbjct: 124 LWITVYAEDKEAERIWLEEVGVDPGRFTRIATSDNFWSMGDTGPCGPCSEIFYDHGPSVA 183 Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PG+ EE G+RY+EIWNLVFMQ+E+ LPK S+DTGMGLER+A V+Q NN Sbjct: 184 GGPPGTPEEDGDRYVEIWNLVFMQYERAGDGTLTPLPKPSVDTGMGLERLAAVMQRVRNN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YDIDLF++L++A+ ++ G + + RVI DH+RS +FL+ DG+LP+NEGRGYVLRR Sbjct: 244 YDIDLFRNLVKAAAELAGTTDLAQSSL--RVIADHIRSCAFLVTDGVLPSNEGRGYVLRR 301 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG EP L+ LC EMG AYPEL++A+ +E+ L E+ERF +TL+ Sbjct: 302 IIRRAIRHGYKLGIREPFFYKLVGPLCAEMGQAYPELVEARPRVEQVLDKEEERFAETLE 361 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +G+ +LD + LG +++GD AF+LYDT+G P+D+ D+ GL +D+ F +A+E Sbjct: 362 QGMKILDVAIRDLGS-PVISGDTAFQLYDTYGFPVDLTADVAREHGLQ-VDMAGFERAME 419 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR RARA S +++I + A +F GY + ED +++ Sbjct: 420 AQRERARAAS-HFSVDYSQEIHLDV-----ACEFTGY------RNAVEDTRIV------- 460 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 A+++ G+ V+ +G+ VV ++TPFYAE+GGQ+GD G D ++ Sbjct: 461 ----------ALLRDGQAVDRLEAGEDGVVVLEKTPFYAESGGQVGDRGVIRSDSAVFEV 510 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D +K+ + +H + G L ++ R ++NHSATHLLH AL +LG Sbjct: 511 ADTRKQGSDLILHRGKLREGALLRGAVCRAEVEQSLRLATALNHSATHLLHAALRRVLGE 570 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV+Q GS + P+ LRFD +H +P++ +L IE VN I +N V +M ++ A+ G Sbjct: 571 HVTQKGSLVDPERLRFDFSHFEPVSPEQLDEIERLVNREIRRNAEVTAEVMAKDAAMRLG 630 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRV+ + G S+ LCGG H G+I L IVSES + AG+RRI Sbjct: 631 AMALFGEKYGDDVRVLRI-----GDFSTELCGGIHARRAGDIGLFKIVSESGVAAGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--- 780 EA+TG A + + L+ LA +K + + R+++++E+ R L+ R+L+ Sbjct: 686 EAVTGAAAVEAVEATERLLRRLAERMKAGRDTLEERLDQMFEKNRALE-----RELERLK 740 Query: 781 -----LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 DL+ IA V ++ + E D++ L+ ++D L+ ++ S I+L + Sbjct: 741 AKTAGAAGADLASRAVDIAGVKVLAARVDEADARMLRELVDQLKDRLGSAAIVLAAVEG- 799 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K S++ VT D A DL A + GG GGGRP +AQ+GG + A+ GV Sbjct: 800 GKVSLVAGVTRDQTGHIRAGDLVNSVATRI-GGKGGGRPDLAQAGGNRPEELQGALDGVP 858 Query: 894 SFLKK 898 ++++ Sbjct: 859 EWVRR 863 >gi|258404449|ref|YP_003197191.1| alanyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692] gi|257796676|gb|ACV67613.1| alanyl-tRNA synthetase [Desulfohalobium retbaense DSM 5692] Length = 880 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/894 (42%), Positives = 542/894 (60%), Gaps = 45/894 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLE+F + GHE++ SS L+P +DP+L+FTN+GMV FK +F GQ+K Y Sbjct: 1 MVTAAEIRQRFLEYFARQGHEIVKSSPLVPKDDPSLLFTNAGMVQFKKVFLGQDKRNYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK A+ AW LT+E L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAVDFAWRFLTEELGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY +VY ED+EA++LWK+I+GL ++I R+ DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PKDRLYASVYREDDEAYELWKEIAGLPDERIYRLGEKDNFWSMGDTGPCGPCSEILIDQG 180 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 C P G E +R++EIWNLVFMQF++ LP+ SIDTGMGLER+A V Sbjct: 181 SHMSCGPECEIGVC-ECDRFLEIWNLVFMQFDRDASGTMTPLPQPSIDTGMGLERIAAVC 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295 Q +N+D DLF LI+ + + G+ Y + +N RVI DH R+ +F++ADGILP+NE Sbjct: 240 QGVYSNFDTDLFSGLIRTTAERAGVVYGKDEEINTALRVIGDHSRAVAFMLADGILPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + RL+G +P + + + +EMG YPEL + + + +R E+ Sbjct: 300 GRGYVLRRLIRRAFRFGRLIGLRDPFLFDVCSQVVSEMGDDYPELHETAAFMVKVVRQEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ERFG TLD+GL LL+ L L G+ ++ G VAFKLYDT G P+DI+ D+ ARG Sbjct: 360 ERFGTTLDKGLALLEEELESLQGAGQTQVPGG-VAFKLYDTFGFPIDIVNDVAEARGFT- 417 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F + ++ Q+ R++A G G+ + +L E + F+GY+ L+ + Sbjct: 418 VDEAGFQEHMQAQKERSKAAWSGSGATDMAARFVALLEAGVQSDFVGYETLQST------ 471 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S I + G+ V+E +G+ +V +TPFY E+GGQ+GD+G Sbjct: 472 ----------------SRIAALLKDDGQEVQELAAGENGYLVTARTPFYGESGGQVGDSG 515 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 IG + D K A + VH V++G L + L +D R + NH+ THL Sbjct: 516 RVIGPRGDGAVLDTIKPAAQLTVHSITVKQGSLAVDDEAELIVDEGERVATARNHTVTHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + D LRFD+TH + +T+ E++++ED VN I + PV + Sbjct: 576 LHAALREVLGEHVKQAGSLVASDRLRFDLTHIQALTAEEIQAVEDKVNQSILADTPVESA 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ A+ GA AL G KY D VRV+ + GV S LCGGTH+ +TG+ I+S Sbjct: 636 HMDYSQAVQGGAVALFGEKYEDEVRVIDIP----GV-SRELCGGTHLRATGQAGFFCILS 690 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+++ AG+RRIEA TG +A Q +L+ A LK Q + GR++++ E+ + L+ Sbjct: 691 EAAVSAGVRRIEAATGWQAVRTFTEQRTRLREAAQLLKAPQTEITGRIQDLQEQLKSLRK 750 Query: 773 IHAKRKLQLNVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + QL DL ++ + ++ + D K L+ +MD ++ K+ SG+++L Sbjct: 751 EKEALEGQLQSAKGGDLMSQVEELGGIPVLTAEVEAPDVKTLRGMMDDVRSKLSSGVVLL 810 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +E KA +++ V++DL DRF A L + A+ + GG GGGRP +AQ+GG N Sbjct: 811 AA-KQEAKAMLILFVSQDLHDRFTAPGLIKQVAQEI-GGSGGGRPDVAQAGGGN 862 >gi|251788614|ref|YP_003003335.1| alanyl-tRNA synthetase [Dickeya zeae Ech1591] gi|247537235|gb|ACT05856.1| alanyl-tRNA synthetase [Dickeya zeae Ech1591] Length = 875 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/909 (43%), Positives = 556/909 (61%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIIYAWELLTSSEWFGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYATDDEAYDIWANEVGVPHERIIRIGDNKGAPYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NYDIDLF LI + +V G N + RVI DH+RS +FLIADG++P Sbjct: 244 ISAVLQHVNSNYDIDLFSTLIAEAARVVGTDDLNNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + L+E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGPLVDVMGSAAEELKRQQSLVEQALK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL+LLD + L K + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 NEEEQFARTLERGLLLLDEEIKQL-KGDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E QR RAR S G G+ + SL +T F GY Sbjct: 420 VDEAGFERAMEAQRQRARDAS-GFGAD-----YNSLIRVDESTTFCGY------------ 461 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + T S++V AI +QGE V+E +G V+ +TPFY E+GGQ+GD G Sbjct: 462 ----------ERTEQQSTVV-AIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + R + D QK + I H + +G+LR + +D+ R ++ +NHSATHL Sbjct: 511 TLVSAAARFSVVDAQKYGQAIG-HVGSLVQGVLRVNDKVDAAVDHVRRDRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + + +++ +ED VN I +NLPV T Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDNYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLPVDTD 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A A GA AL G KY+++VRV+S+ G S LCGGTH TG+I L IVS Sbjct: 630 VMALDAARAKGAMALFGEKYDEQVRVLSM-----GDFSIELCGGTHARRTGDIGLFQIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA+TG+ A L Q + L + +K N+ +V + E R L+ Sbjct: 685 ESGTAAGVRRIEAVTGENAIVALHQQSDVLHEVTQLVKGDSNNLADKVRSLLERTRGLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ S K D+N + ++++ V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQQAAQESSSLSGKAKDINGVKLLVTQLNNVEPKLLRTMVDDLKNQLGSAVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K S++ VT++L DR A +L A + GG GGGRP MAQ+GG + Sbjct: 805 STVA-DGKVSLIAGVTKELTDRVKAGELVGFVANQV-GGKGGGRPDMAQAGGSDVGALPS 862 Query: 888 AIAGVASFL 896 A+ + +++ Sbjct: 863 ALTSIEAWV 871 >gi|88860236|ref|ZP_01134874.1| alanyl-tRNA synthetase [Pseudoalteromonas tunicata D2] gi|88817434|gb|EAR27251.1| alanyl-tRNA synthetase [Pseudoalteromonas tunicata D2] Length = 866 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/907 (43%), Positives = 543/907 (59%), Gaps = 58/907 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL++F H+ + SSSL+P NDPTL+FTN+GMV FK++F G +K Y T Sbjct: 5 TTAQIRQAFLDYFSSKQHQAIASSSLVPGNDPTLLFTNAGMVQFKDVFLGADKRPYTRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT L Sbjct: 65 SSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIKFAWEFLTTVLKLPT 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TVY D+EAF +W K GL AD+IIRITT DNFWSM +TGPCGPCSEIF+D G+ Sbjct: 125 EKLLVTVYHTDDEAFDIWHKQVGLPADRIIRITTTDNFWSMGDTGPCGPCSEIFYDHGDD 184 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PGS+EE G+R+IEIWNLVFMQF + LPK S+DTGMGLER++ ++Q Sbjct: 185 IWGGPPGSAEEDGDRFIEIWNLVFMQFNRHADGSMEPLPKQSVDTGMGLERISAIMQGVH 244 Query: 242 NNYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ID+F+ LI+A+ VT + E ++ RVI DH+RS +FLIADG++P+NEGRGYV Sbjct: 245 SNYEIDIFQGLIRAAADVTNAQDLEDKSL---RVIADHIRSCAFLIADGVMPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG + L+ AL +MG AY EL + + +IE+ LR E+E+F K Sbjct: 302 LRRIIRRAVRHGNKLGAKDNFFHKLVGALAEQMGDAYQELYKQREIIEKVLRIEEEQFSK 361 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RGL +L+ L + D ++ GDV FKLYDT+G P D+ D+ R + ID F Sbjct: 362 TLERGLAILEDGLKDITGD-VIPGDVVFKLYDTYGFPADLTADVARERFMT-IDEPGFQA 419 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + QR A+ + G+ E++ +K+ T F GY+ Sbjct: 420 CMAAQRKMAQ-QAGKFGTDYNEQL---KSDKH--TDFKGYE------------------- 454 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S V + +G+ V GQK VV D+TPFYAE+GGQ GD G G Sbjct: 455 ----HEHFSGTVIELFFEGQSVNSLADGQKGIVVLDRTPFYAESGGQAGDKGILKIAGGE 510 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + + K F H +++ G + + ID R + NH+ATHLLH AL + Sbjct: 511 FSVYNTTKLGNA-FAHTGVIQ-GQIALNDRVDAQIDTTRRDNIRKNHTATHLLHEALRQV 568 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + + LRFD +H + +T A+L IE VN I +N+ + T +M +DA Sbjct: 569 LGEHVGQKGSLVESERLRFDFSHFEGVTKAQLIEIELMVNAEIRRNVDLQTELMQIDDAK 628 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A GA AL G KY+D VRVVS+ G S LCGGTHV G+I L IVSES I AGI Sbjct: 629 AKGAMALFGEKYDDEVRVVSI-----GEFSIELCGGTHVKRLGDIGLFKIVSESGIAAGI 683 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A + Q E L +A+ +K + V +V + E + L+ K Q Sbjct: 684 RRIEAVTGAAAIEVMHHQAEVLNHIAALVKSDANSAVEKVTALVERTKGLE----KEINQ 739 Query: 781 LNVEDLSCH---------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 LN + S +IA V + ++ +SK L+ ++D L+ K+ SG+I L G++ Sbjct: 740 LNDKLASAAGAGLLDSVIEIAGVKVLIANVAGTESKALRGMVDDLKNKLGSGVIAL-GVA 798 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K S++ VT+DL +F A +L A+ + GG GGGRP MAQ+GG A+ Sbjct: 799 EGDKVSLITGVTKDLTGKFKAGELVNFMAQQV-GGKGGGRPDMAQAGGSEPEHLASALDS 857 Query: 892 VASFLKK 898 VA+++ + Sbjct: 858 VAAWISE 864 >gi|255319660|ref|ZP_05360869.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SK82] gi|262378543|ref|ZP_06071700.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SH164] gi|255303277|gb|EET82485.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SK82] gi|262299828|gb|EEY87740.1| alanyl-tRNA synthetase [Acinetobacter radioresistens SH164] Length = 897 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/928 (43%), Positives = 540/928 (58%), Gaps = 76/928 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 9 AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGAEKRDYVRAVSS 68 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT E L + Sbjct: 69 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWEFLTSEQWLALPK 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY TVY D+EAF +W K GL A++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 129 DRLYATVYHTDDEAFDIWNKEIGLDAERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GGLPG+ EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 189 FYDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHALPAPSVDTGMGLERIS 248 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNIVNH----RVIVDHLRSS 282 VLQ +NY+IDLF+HL++A+ ++ G+ E N V++ +V+ DH RS Sbjct: 249 AVLQHVNSNYEIDLFQHLLKAAAEIIGVDTASLEAEAKEKNTPVHYPASLKVVADHARSC 308 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 FLIADG+ P+NEGRGYVLRRI+RRA+ + LG T +L L MG+AYPEL Sbjct: 309 CFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGTAYPELEA 368 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 K IE L E+E+F KTL++GL LL+G L+ L K I+ G++ FKLYDT+G P+D+ Sbjct: 369 NKARIEAALIKEEEQFAKTLEQGLKLLEGELTQL-KGSIIPGEIVFKLYDTYGFPVDLTA 427 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 DI R L+ ID F + + QR RAR +G + S+ + T+F GYD Sbjct: 428 DIARERDLS-IDEAGFEKEMAAQRQRARE------AGKFAVDYNSIVKVEDETEFSGYDA 480 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + G + AI + G +V+E G + +V +QTPFYA Sbjct: 481 IEG-----------------------QGQIIAIYKDGTLVDEVTEGDEALIVLNQTPFYA 517 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+GDTG + ++ D KK+ FVH IV G L+ ++ T+ + R Sbjct: 518 ESGGQIGDTGIFKNETGIFEVQDT-KKSGNAFVHQGIVTMGNLKVTQNVEATVKAELRAA 576 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NHSATHLLH AL ILGSHV Q GS + D LRFD + +P+T +L+ IE VN Sbjct: 577 TARNHSATHLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQIERLVNAE 636 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTH 698 + N V T +++ E A GA L G KY VRV+S +E ++ V LCGG H Sbjct: 637 VIANTAVTTELLDIETAKTKGAMMLFGEKYGSEVRVLSMGSIIEEKNFSVE---LCGGIH 693 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V TG+I L I SES + AGIRRIEA+TG +A + D + + S LK + V Sbjct: 694 VKRTGDIGLFKITSESGVAAGIRRIEAVTGTKALELVQKADSDINQINSLLKAQKDQTVE 753 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLN--------VEDLS-CHKIADVNFMSHIISEVDSKEL 809 RV+ E LQ K+ QLN E LS +A + + + +D+K L Sbjct: 754 RVQTAVENVSALQ----KQIEQLNQKLANFQAAELLSQVQTVAGRSTLITTVQGMDAKSL 809 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 +++ D+ + K+ +I+L G+ + K S++ V +D A D+ + A L GG GG Sbjct: 810 RNLHDSTKSKLDHAVIVLAGVDGD-KVSLIASVAKDFTSSIKAGDIIKHLATEL-GGKGG 867 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897 G+P +AQ G P K +Q +A + ++L+ Sbjct: 868 GKPDLAQGGAPLNEKFEQVMADLTAWLE 895 >gi|325916030|ref|ZP_08178320.1| alanyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937] gi|325537706|gb|EGD09412.1| alanyl-tRNA synthetase [Xanthomonas vesicatoria ATCC 35937] Length = 882 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/909 (43%), Positives = 542/909 (59%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FFQ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFQGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTEVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASGLTGVTDLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVLARDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V + E++ G AF+L+DT+G P+D+ DI RGL +D Sbjct: 366 EERFAETLDAGMKIFDDVAAR--SQEVIPGADAFRLFDTYGFPVDLTSDIARERGLR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAG-KFGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 475 -----------------VVALLKQGRPVERAQAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + ++I D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGSDVSIEIVDTQKFAGQFHGHVGRITEGALALGDVLAGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PI++ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNAEVRTNHSVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHVS TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGEHVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + +G+RRIEA+TGQ A ++ ++ +L AS L + VV +V + E ++L +L Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLFEAASLLGGNTTEVVDKVRALTERQKRLEREL 752 Query: 773 IHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL S +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K A V V L +++++ GG GGGRP +AQ GG +G A+ Sbjct: 813 ASAGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGAALATAL 870 Query: 890 AGVASFLKK 898 GV S++K+ Sbjct: 871 DGVPSWVKQ 879 >gi|120553897|ref|YP_958248.1| alanyl-tRNA synthetase [Marinobacter aquaeolei VT8] gi|205830137|sp|A1TZ92|SYA_MARAV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120323746|gb|ABM18061.1| alanyl-tRNA synthetase [Marinobacter aquaeolei VT8] Length = 876 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/914 (43%), Positives = 562/914 (61%), Gaps = 62/914 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FLE+FQ+ GH ++PSSSL+P +DPTL+FTN+GM FK++F G+E+ Y T+ Sbjct: 3 TAELRQAFLEYFQQQGHAIVPSSSLVPHDDPTLLFTNAGMNQFKDLFLGREERDYTRATS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L Sbjct: 63 SQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTGEQHLNLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 Q +L++TVY ED+EAF +W + G+ A++I+RI N DNFW M +TGPCGPC+E Sbjct: 123 QEKLWVTVYAEDDEAFDIWNQEIGVPAERIVRIGDNKGARYASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IFFD G + GG PGS EE G+RYIEIWN+VFMQ+ + E LPK S+DTGMGLER+ Sbjct: 183 IFFDHGPDVAGGPPGSPEEDGDRYIEIWNVVFMQYNRTADGEMLNLPKPSVDTGMGLERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+IDLF+ L++A+ + G + RV+ DH+RS +FLIADG++P+ Sbjct: 243 AAVLQGVHSNYEIDLFQDLLKAASDILGGA--ATTEASLRVVADHIRSCAFLIADGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRG+VLRRI+RRA + LG T+P L AL MG AYP+L+ ++ IE+ L Sbjct: 301 NEGRGFVLRRIIRRAARHGNKLGATQPFFYKLTGALVELMGEAYPQLVSSRKQIEKVLLQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTLD+GL LL+ ++ L EI G+ F LYDT+G P+D+ DI RGL + Sbjct: 361 EEEQFAKTLDKGLRLLEQDIAELKGTEI-PGETVFTLYDTYGFPVDLTNDIARERGLT-L 418 Query: 414 DIISFNQALEEQRSRARAHS-LGL---GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 D + +A+E QR RARA S G+ +G T + G T+F GYD + G + Sbjct: 419 DYEGYEKAMEAQRDRARAASKFGIDYNAAGITIE---------GKTEFTGYDHVDGHER- 468 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ ++ GE A +G + VV ++TPFYAE+GGQ+G Sbjct: 469 ----------------------IRTVLVNGE-ERNAEAGDECVVVLERTPFYAESGGQVG 505 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG G R Q+TD +K+ + +H + G L + + ID+ R + NHSA Sbjct: 506 DTGLLTWSGGRFQVTDTRKEGDN-HLHVGTLIEGELFPGLEVDARIDHARRERTKRNHSA 564 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG HV+Q GS + PD LRFD +H + +T +L+ IE VN+ I +N PV Sbjct: 565 THLLHAALRNILGEHVTQKGSLVDPDKLRFDFSHFEAVTPEQLREIERTVNEQILENTPV 624 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 I + + A GA AL G KY D VRV+++ + +S LCGGTHV+ TG+I L Sbjct: 625 DIDITDMDTAKEKGAMALFGEKYGDVVRVLTMGTDK---YSVELCGGTHVARTGDIGLFR 681 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I SES I +G+RRIEA+TG A + + L+ A +K ++ +VV +V+++ + R+ Sbjct: 682 ITSESGISSGVRRIEAVTGLGALEWVDETERTLRETARLVKGTRDSVVDKVKQVLDRNRQ 741 Query: 770 LQ--LIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ + K KL + DL S ++A + ++ + D K L D L+ K+ G+ Sbjct: 742 LEKDVDALKAKLASSAGTDLAGSAVEVAGLKVVASEMEGADRKALMETADQLKNKLGEGV 801 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++L + ++ K ++ VT+ +R A DL + A ++ G GGGRP MAQ GG + ++ Sbjct: 802 VVLATV-EDGKVVLVAGVTKSATNRIKAGDLMKHLASLV-DGKGGGRPDMAQGGGNDPSR 859 Query: 885 ADQAIAGVASFLKK 898 +A+AGV +++++ Sbjct: 860 LAEALAGVPAWVEQ 873 >gi|21242491|ref|NP_642073.1| alanyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306] gi|24418694|sp|Q8PLQ0|SYA_XANAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21107940|gb|AAM36609.1| alanyl-tRNA synthetase [Xanthomonas axonopodis pv. citri str. 306] Length = 882 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/909 (43%), Positives = 541/909 (59%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDVIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQTLIGKAGSLTGVADLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ AK + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALSAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V AI++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 475 -----------------VVAILRQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ +++ D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGPGVSVEVADTQKFAGQFHGHVGRISEGALALGDVLAGEIDTQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + +G+RRIEA+TGQ A ++ ++ +L A+ L + VV +V + E ++L +L Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTTEVVDKVRALTERQKRLEREL 752 Query: 773 IHAKRKLQLNV-EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL I A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGARAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K A V V L +++++ GG GGGRP +AQ GG +G A+ Sbjct: 813 ASGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV ++K+ Sbjct: 871 DGVPLWVKQ 879 >gi|262279704|ref|ZP_06057489.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202] gi|262260055|gb|EEY78788.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus RUH2202] Length = 883 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 9 AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + L + Sbjct: 69 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSDEWLALPK 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 129 DRLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GGLPGS EE G+R+IEIWN VFMQF + N LP S+DTGMGLER++ Sbjct: 189 FFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTNDGVLHPLPAPSVDTGMGLERIS 248 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL E Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATLVRE 366 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L KD+ + G FKLYDT+G P D+ DI R ID Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDFI-ID 424 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + S+ + G TQF GY Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAIDYNSIVQVEGETQFDGY-------------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 I+ T G I+ AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 465 -------IN-TTGQGQII-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D KK+ G FVH IV G L+ + ++ + R + NHSATHLLH Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKADQNVEAIVKADIREATARNHSATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILGSHV Q GS + D LRFD + +P+T +L+ +E VN I N V T ++ Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANTAVTTELL 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY + VRV+++ D S LCGG HV TG+I L I SE Sbjct: 635 DIEAAKAKGAMMLFGEKYGNEVRVLAMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEA+TG +A + D ++ + LK + V RV+ E LQ Sbjct: 695 GGVAAGVRRIEAVTGTKALDVVQKTDSDIQHINGLLKAQKDQTVERVQANVELVSALQ-- 752 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K+ QLN +L IA + + VD+K L+++ D+++ K+++ + Sbjct: 753 --KQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAV 810 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868 Query: 885 ADQAIAGVASFLKK 898 Q IA + ++L++ Sbjct: 869 FGQVIAALPAWLEQ 882 >gi|289662681|ref|ZP_06484262.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669644|ref|ZP_06490719.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 882 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/909 (43%), Positives = 540/909 (59%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ AK + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S EI+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GYD Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVASMSPTVFLGYDAYDADALK----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG E A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 475 -----------------VVALLKQGRPAERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ +++ D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGPGVSIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + +G+RRIEA+TGQ A ++ ++ +L A L + VV +V + E ++L +L Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752 Query: 773 IHAKRKLQLNV-EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL I A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGAGAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDAVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K +++ V + A +L A + GG GGGRP +AQ GG +G A+ Sbjct: 813 ASG-GKVALVAGVNGSPTGKVKAGELLGYIASQI-GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV ++K+ Sbjct: 871 DGVPLWVKQ 879 >gi|261820431|ref|YP_003258537.1| alanyl-tRNA synthetase [Pectobacterium wasabiae WPP163] gi|261604444|gb|ACX86930.1| alanyl-tRNA synthetase [Pectobacterium wasabiae WPP163] Length = 875 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/909 (43%), Positives = 553/909 (60%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVDSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTSPQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M ETGPCGPC+ Sbjct: 124 PKEKLWVTVYATDDEAYNIWADEVGVPRERIIRIGDNKGGPYASDNFWQMGETGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD GE I GG PGS E+G+RYIEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFFDHGEHIAGGPPGSPDEDGDRYIEIWNLVFMQFNRQVDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NYDIDLFK LI A + G N + RVI DH+RS +FLIADG++P Sbjct: 244 VSAVLQHVNSNYDIDLFKTLIDAVAKAVGTTDLTNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA + +LG T+ L+ L MG A EL + + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAARHGNMLGATDAFFYKLVAPLIDVMGPAAAELKKQQSVVEQALK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F +TL+RGL LLD + +L K + L+G+ F+LYDT+G P+D+ D+ RGL Sbjct: 362 MEEEQFARTLERGLSLLDEEIKNL-KGDTLDGETVFRLYDTYGFPVDLTADVCRERGLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+ QR RAR S G G + E T F GY+ ++ Sbjct: 420 VDEEGFESAMTAQRQRAREAS---GFGVDYNSLIRVDEN---TPFCGYEK------TQQQ 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ G V++ +G V+ ++TPFY E+GGQ+GD G Sbjct: 468 AKVI-----------------ALYHNGNAVDQIAAGDDAVVILNETPFYGESGGQVGDQG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + D QK + I H + +G LR S+ +D Q R ++ +NHSATHL Sbjct: 511 ELKNAGVSFAVQDTQKYGQAIG-HVGKLTQGTLRVNDSVDANVDSQRRDRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H++ + +++ +ED VN I +NL V T Sbjct: 570 LHAALRQVLGDHVAQKGSLVNDSYLRFDFSHTEAMKPEQIRLVEDIVNAQIRRNLTVQTD 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA A GA AL G KY+D VRV+++ G S LCGGTH + TG+I L I+S Sbjct: 630 VMALDDARAKGAMALFGEKYDDHVRVLTM-----GDFSIELCGGTHANRTGDIGLFQIIS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AG+RRIEA TG+ A S L Q + L+ +A LK N+ +V + + R L+ Sbjct: 685 ESGTAAGVRRIEATTGENALSALHRQSDVLQDIAQLLKGDSHNLTDKVRSVLDRARALEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ S K +VN + ++++ VD K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKAQQAAQESSSLSGKAKEVNGVKLLVTQLDNVDPKLLRTMVDDLKNQLGSAVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G + E + S++ VT+DL DR A +L A+ + GG GGGRP MAQ+GG + Sbjct: 805 -GTATEGRVSLISGVTKDLTDRVKAGELIGFVAQQV-GGKGGGRPDMAQAGGSDALALPG 862 Query: 888 AIAGVASFL 896 A+A V S++ Sbjct: 863 ALASVESWV 871 >gi|322831421|ref|YP_004211448.1| alanyl-tRNA synthetase [Rahnella sp. Y9602] gi|321166622|gb|ADW72321.1| alanyl-tRNA synthetase [Rahnella sp. Y9602] Length = 875 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/912 (43%), Positives = 558/912 (61%), Gaps = 60/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH ++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHNIVSSSSLVPTNDPTLLFTNAGMNQFKDVFLGLDKRDYNRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINYAWELLTGENWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EAF++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYETDDEAFEIWEKEVGVPKERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS+EE G+RYIEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + V+Q +NYDIDLF+ LI A +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 ITAVMQHVNSNYDIDLFQKLIAAVAEVTGATDLSNKSL--RVIADHIRSCAFLIADGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MG A EL + + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAQDTFFYKLVAPLIEVMGPAATELKEQQAMVEQLLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L K + L+G++AF+LYDT G PLD+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDEELAAL-KGDTLDGEIAFRLYDTFGFPLDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD-LLRGSKFMKE 471 +D F +A++ QR RAR S G + + S+ G TQF GY+ L R SK Sbjct: 420 VDEAGFEKAMDVQRRRARESS-GFSAD-----YNSMVRVDGVTQFSGYEHLQRHSK---- 469 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ G+ V + +G VV D TPFY E+GGQ+GD Sbjct: 470 --------------------VVALFVDGQPVNDIQAGVNAIVVLDDTPFYGESGGQVGDK 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++D QK + I H + G L S+ +D R ++ +NHSATH Sbjct: 510 GILKTTTGVFSVSDTQKYGKAIG-HQGALSAGKLSIGDSVEAEVDVARRDRIRLNHSATH 568 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + + LRFD +H + + E++ +ED VN I +NLP+ T Sbjct: 569 LLHAALRQVLGKHVAQKGSLVNDNYLRFDFSHFEAMKPEEIRQVEDLVNAQIRRNLPIQT 628 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ ++A GA AL G KY D VRV+S+ G S+ LCGGTH S TG+I L I Sbjct: 629 TIMDLDEAKEKGAMALFGEKYEDSVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIQ 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--- 768 SES AG+RRIE ITG+ A + L Q + L+ +A +K ++ ++ + E R Sbjct: 684 SESGTAAGVRRIEGITGENAINALHQQSDLLQDVAHLVKGDVNSITDKIRSLIERSRTLE 743 Query: 769 -KLQLIHAKRKLQLNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +LQ + ++ Q + S K + V + V+ K L++++D L+ ++ S II+ Sbjct: 744 KELQQVKGQQAAQESASLSSQAKEVKGVKLLVRQFDNVEPKMLRTMVDDLKNQLGSVIIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L I+ + K S++ VT+DL DR A +L A ++ +V GG GGGRP MAQ+GG + Sbjct: 804 LATIA-DDKVSLIAGVTKDLTDRVKAGELIASVAQQV--GGKGGGRPDMAQAGGSDVQAL 860 Query: 886 DQAIAGVASFLK 897 A+A V ++++ Sbjct: 861 PAALATVEAWVE 872 >gi|121998432|ref|YP_001003219.1| alanyl-tRNA synthetase [Halorhodospira halophila SL1] gi|205830063|sp|A1WXK5|SYA_HALHL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|121589837|gb|ABM62417.1| alanyl-tRNA synthetase [Halorhodospira halophila SL1] Length = 863 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/901 (43%), Positives = 549/901 (60%), Gaps = 53/901 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GHE++PSS L+P NDPTL+FTN+GMVPFK +F G+E+ YQ T+ Sbjct: 4 AQLRAAFLDFFRERGHEVVPSSPLVPANDPTLLFTNAGMVPFKEVFLGREQRGYQRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+ +L R Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIRYAWSFLTEVVELPPER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TVY++D+EA ++W + G+ + RI +DNFWSM +TGPCGPCSE+F+D G +P Sbjct: 124 LWVTVYEDDDEAAQIWLEEIGVDPARFRRIGAHDNFWSMGDTGPCGPCSEVFYDHGPEVP 183 Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS EE G+RYIE+WNLVFMQ+++ + LP SIDTGMGLER+A VLQ +N Sbjct: 184 GGPPGSDEEDGDRYIEVWNLVFMQYDRDAEGNLNPLPSPSIDTGMGLERLAAVLQGVHDN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 ++ DLF LI A+ ++ G+ + +V+ DH+R+ SFLI DG+LP+ EGRGYVLRR Sbjct: 244 FETDLFTPLIDAAGEIAGVS--DRRKPSLKVVADHIRACSFLIVDGVLPSTEGRGYVLRR 301 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG EP L+ L MG A+PEL + +E+ L E++RF +TL+ Sbjct: 302 IIRRAVRHGYQLGIDEPFFYRLVDPLDAVMGEAFPELRDRREFVEKILFQEEKRFRETLE 361 Query: 364 RGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 GL LLD L G D +++G+V FKLYDTHG P+D+ DI R L +D F + Sbjct: 362 DGLALLDEYLG--GNDSGVIDGEVVFKLYDTHGFPVDLTADIARERNLE-VDYQGFEARM 418 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EQR RARA S G E + G ++F GY+ L ED Sbjct: 419 AEQRERARAASR-FGGAREEVV------DAGESRFTGYETL-------ED---------- 454 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 V S++ + Q G V+ G++ VV D+TPFYAE+GGQ+GD G + +G+R + Sbjct: 455 -----VGSVI-GLYQDGRSVQRLQPGEEGMVVLDRTPFYAESGGQVGDRGEILANGLRFR 508 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D K+ E H +E G L + +D R NHSATHLLH AL ILG Sbjct: 509 VADTVKQGEA-HGHLGRLESGELGVGDQVTARVDRGTREATVRNHSATHLLHAALREILG 567 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS + PD LRFD +H + + +L+ IE VN I N PV M E+A+ Sbjct: 568 DHVQQKGSLVAPDRLRFDFSHYEAPSREDLERIEARVNQEILTNHPVEAAHMAYEEAVQV 627 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY D VRV+S+ G +S LCGGTH + TG+I L I+ E+ + G+RR Sbjct: 628 GAMALFGEKYGDTVRVISL-----GDYSQELCGGTHAARTGDIGLFKIIDETGVAGGVRR 682 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEAITG+RA + + +L LA L+V N+V +VE++ E R+ + + K +L Sbjct: 683 IEAITGERAIGWVQEAEGRLNRLADLLRVGPDNLVMKVEQLSERTREQEKEIERLKQKLA 742 Query: 783 VED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 + ++A V F++ + E K L+ +D L+ ++ SG+I+L + E K Sbjct: 743 TQAGRSLLDDAGEVAGVRFLATCV-EGGGKGLRDTLDQLKNQLGSGVIVLAAVQGE-KVQ 800 Query: 838 VLIVVTEDLLDRFNAVDLA-RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++ VT+DL DR A DL ++A+V GG GGGR AQ+GG + + + A+A V +++ Sbjct: 801 LVAGVTKDLTDRLAAGDLVNHVAAQV--GGRGGGRADFAQAGGKDPSHVNDALASVEAWI 858 Query: 897 K 897 K Sbjct: 859 K 859 >gi|224825848|ref|ZP_03698952.1| alanyl-tRNA synthetase [Lutiella nitroferrum 2002] gi|224602072|gb|EEG08251.1| alanyl-tRNA synthetase [Lutiella nitroferrum 2002] Length = 877 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/912 (43%), Positives = 541/912 (59%), Gaps = 60/912 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FL+FF GH+++PSSSLIP NDPTLMFT +GMV FK++F G EK Y TT Sbjct: 3 TSEIRQKFLDFFASKGHQVVPSSSLIPGNDPTLMFTVAGMVQFKDVFLGFEKRDYTRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E L Sbjct: 63 SQKCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAITYAWEFLTGEQWLALP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L +TVY D+EAF +W K GL +KI+RI N DNFW+M +TGPCGPC+E Sbjct: 123 KEKLMVTVYASDDEAFDIWHKTVGLPVEKIVRIGDNKGAAYASDNFWTMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE + GG PGS E+G+R++EIWN VFMQF + LPK S+DTGMGLER+ Sbjct: 183 IFYDHGEEVAGGPPGSPDEDGDRFMEIWNNVFMQFNRDETGTLHPLPKPSVDTGMGLERL 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 +TVLQ +NY+ D L++A+ + TG++Y N+ + +VI DH+R+ SF+IADGILP+ Sbjct: 243 STVLQHVKSNYETDGLACLVRAAARETGVEYS-QNVPSLKVIADHIRACSFMIADGILPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI RRA+ + LG ++ L EMG AYPEL Q + IE+ LR+ Sbjct: 302 NEGRGYVLRRIARRAIRHGYKLGQKGLFFHKIVADLVEEMGGAYPELRQQQAHIEDNLRA 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ L+D L G ++GD FKLYDT G P+D+ DI R + + Sbjct: 362 EEVRFAETLEHGMALVDAALQ--GGKIRMDGDTIFKLYDTFGFPVDLTADICRERNIE-V 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F A+ QR RARA S + K+ +L+ T+F GY+ Sbjct: 419 DMEGFEHAMNAQRERARAAS-------SFKMTGNLEYAGADTRFHGYE------------ 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG- 532 T V + V A+ + VE+ G++ VV D T FYAE GGQ+GD G Sbjct: 460 -----------TASVDAKVLALFKGNTPVEQLAEGEEGVVVLDDTAFYAEGGGQVGDCGE 508 Query: 533 --CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 + G G +TD QK F H V RG L ++ TID R + NHSAT Sbjct: 509 ISVSGGVGALFDVTDTQKIKAATFGHSGRVVRGALHVGDTVQATIDLHKRLATARNHSAT 568 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LGSHV+Q GS + + RFD H +P++ A++ IE VN I+ N+ V Sbjct: 569 HLLHAALRHVLGSHVAQKGSLVNAERTRFDFAHGEPVSVAQIAEIERVVNRIVLHNVEVS 628 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 +M +DAI +GA AL G KY D VRV+ + G S+ LCGGTHV TG+I I Sbjct: 629 ANVMAYDDAIRAGAIALFGEKYGDEVRVLKM-----GEFSTELCGGTHVKRTGDIGFFKI 683 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRK 769 V+E + AG+RRIEA+TG+ A ++ Q+ +K A LK + VVG++ + + + Sbjct: 684 VAEGGVAAGVRRIEAVTGEGAVAYAQQQESLVKEAAGALKAQTSEEVVGKIGSLQDNLKA 743 Query: 770 L--QLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L +L K KL + D S +I + ++ + D+ L+ +D L+ K++S Sbjct: 744 LEKELSRLKAKLAASAGDTLADSAVEIGGIKVLAAELEGADNTALRETLDKLKDKLKSAA 803 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L + K S++ VT DL + A +L A+ + GG GGGRP MAQ+GG K Sbjct: 804 IVLAA-KGDGKVSLVAGVTADLTGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPEK 861 Query: 885 ADQAIAGVASFL 896 +A+AGV +++ Sbjct: 862 LAEALAGVNAWV 873 >gi|298529109|ref|ZP_07016512.1| alanyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1] gi|298510545|gb|EFI34448.1| alanyl-tRNA synthetase [Desulfonatronospira thiodismutans ASO3-1] Length = 882 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/901 (43%), Positives = 557/901 (61%), Gaps = 43/901 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + IR FL+FFQ N H ++PSSSLIP +DP+L+FTN+GMV FK +F GQEK Y Sbjct: 1 MLSAAEIREKFLKFFQDNHHTVVPSSSLIPADDPSLLFTNAGMVQFKKVFLGQEKRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKERAI LAW LT+E L Sbjct: 61 AVTSQKCLRVGGKHNDLENVGRTRRHHTFFEMLGNFSFGDYFKERAIDLAWTFLTRELGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ +L+IT++ +D++A LW++++G+S D+I R+ DNFWSM +TGPCGPCSE+ +DQG Sbjct: 121 ERDKLFITIFADDDDAHGLWQEVAGVSPDRIYRLGEKDNFWSMGDTGPCGPCSEVLYDQG 180 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E C P G + +RY+EIWNLVFMQ+++ + LP+ SIDTGMGLER++ V Sbjct: 181 EGMSCGPDCAIGVC-DCDRYLEIWNLVFMQYDRDQEGNLNPLPRPSIDTGMGLERISAVC 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q +NYD DL K LI + + +G +Y + ++ V VI DH RSS+F+IADGILP+NE Sbjct: 240 QGVYSNYDTDLLKSLITDTARKSGKEYGRDRDDDVALAVIADHARSSAFMIADGILPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGY+LRR++RRA + R LG EP + + + +M AYPEL + + + +R E+ Sbjct: 300 GRGYILRRLIRRAFRFGRHLGLAEPFLHQTVQVVVQDMSMAYPELEKGRDFMVRVIRQEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TL++GLVLL+ L L ++ + G+ AFKLYDT+G PLDI+ DI RG + + Sbjct: 360 ERFSETLEKGLVLLEEELKKLESLQVNTVPGETAFKLYDTYGFPLDIVNDIAEKRGFS-V 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +++QR RARA G G ++ SL+ + T F+GYD L+ Sbjct: 419 DEAGFQECMQDQRQRARAAWKGSGDAGLGEVLSSLEGELPQTSFVGYDRLQDQ------- 471 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 IV + Q+G E G+K +V +TPFYAE+GGQ+GD G Sbjct: 472 ---------------GEIVLLVDQEGRSREALSQGEKGWLVASRTPFYAESGGQVGDRGR 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + D Q +A G+ H V RG + + LT+D R + NH+ATHLL Sbjct: 517 IQAARGQAMVRDTQDQAAGVVAHEVEVSRGEVHKGDVVDLTVDEGRRVATARNHTATHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD TH + +T+ E++ IE+ VN I + V R+ Sbjct: 577 HLALRRVLGEHVHQAGSLVDEKRLRFDFTHIQALTAEEMERIEEEVNAAILSDYQVQVRV 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ A+ GA AL G KY D+VRVVSV G S LCGGTH+ ST + +VSE Sbjct: 637 MDYSQAVQEGAIALFGEKYTDKVRVVSV-----GNISMELCGGTHLDSTAQAGTFCLVSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S++ +G+RRIEA+TG A ++ G + + SL LKV+ +V +V+ + E+ R+L Sbjct: 692 SAVGSGMRRIEALTGWDALNYWRGMRKSVTSLQETLKVAPDQLVDKVQALQEQMRELARE 751 Query: 774 HAKRKLQLNVE---DLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + +++ E D++ K + V ++ + D + L+S+MD ++ K+ +G+ ML Sbjct: 752 NKALSQKISAEQGRDIASEKKMVGRVPLVARKVDVGDVEGLRSLMDDIRSKLDTGVAML- 810 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G + K ++L+ V++DL + F A +L + AK + GGGGGRP +AQ+GG + D+A Sbjct: 811 GTRNKGKPTLLLYVSKDLHENFTAPELIKEVAKEI-KGGGGGRPDLAQAGGSDAQGLDRA 869 Query: 889 I 889 I Sbjct: 870 I 870 >gi|189183879|ref|YP_001937664.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda] gi|205830168|sp|B3CST3|SYA_ORITI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|189180650|dbj|BAG40430.1| alanyl-tRNA synthetase [Orientia tsutsugamushi str. Ikeda] Length = 889 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/890 (44%), Positives = 540/890 (60%), Gaps = 40/890 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N++ IRTTF+EFF+K GH SSSL+P NDP+L F N+G+V FK+ E Y V Sbjct: 6 NINQIRTTFIEFFKKYGHHHASSSSLVPGNDPSLFFVNAGIVQFKDYVRAPETSKYSRVV 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-GYFKERAIQLAWDLLTKEFDLD 121 T QKCVRAGGKHNDL++VG T RHHTFFEMLGNFSFG K +QL W+ LTKE +D Sbjct: 66 TCQKCVRAGGKHNDLESVGYTARHHTFFEMLGNFSFGEDNAKADFMQLIWNFLTKELFID 125 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL +TVY D E KLW+ I+GL +IIRI T+DNFWSM GPCGPC+EIF+D G+ Sbjct: 126 EDRLIVTVYHTDHETAKLWRSIAGLDDSRIIRIKTDDNFWSMGPVGPCGPCTEIFYDHGD 185 Query: 182 CIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 IPGGLPG+ +E G RY+EIWN+VFMQ+EQ N+ R L K IDTG GLER+ATVLQ Sbjct: 186 KIPGGLPGTKDENGGRYVEIWNIVFMQYEQLNESTRVELAKRCIDTGAGLERIATVLQGV 245 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYDIDLFK+LI E +T +K G +HR+I DHLR+S+FLIADG++P+N+GRGYV Sbjct: 246 YDNYDIDLFKNLIANIEHLTKIKSVGEANFSHRIIADHLRASAFLIADGVMPSNDGRGYV 305 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAM LG EP+M L+ L EMG Y EL + LI L++E+E+F Sbjct: 306 LRRIMRRAMNQIHQLGCKEPVMHLLVQGLINEMGDFYKELRVRQELITYLLKNEEEKFKT 365 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL +GL LL+ +L L+G +AFKLYDT+G P D+ QDIL R ++ I+ F+Q Sbjct: 366 TLSKGLKLLEEESKNLTSGSQLSGHIAFKLYDTYGFPFDLTQDILKKRSIS-INKTEFDQ 424 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQ++RAR G GS + +W LKE++ AT+F+GY LCQ Sbjct: 425 NMLEQQNRARQLWKGQGSNKEQLLWEKLKEEFRATEFVGYS--------------LCQ-- 468 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQ------KVEVVFDQTPFYAEAGGQLGDTGCA 534 IV +++Q + VE Q + ++ +QTPFY ++GGQ+GD G Sbjct: 469 -------AEGIVVSLIQDNQYVEYIDINQVDDNNKEFWLITNQTPFYGQSGGQIGDIGII 521 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + +TD K VH + G + + + ID Q R QL I+HSATH+LH Sbjct: 522 KNNECTIHVTDTIKLFGCTHVHICKIVSGKINLNAVVHMAIDKQYRTQLQIHHSATHILH 581 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILG+H+ Q GS + D LRFDV+H I+ L IE+ VN+II N V RIM Sbjct: 582 AALREILGNHIIQKGSLVAYDYLRFDVSHPTSISKDLLTKIENRVNEIILNNTAVKLRIM 641 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + AIA GA AL KY D VR +S+ E D +S LCGGTHV TG+I I+SE Sbjct: 642 PFDQAIAHGAVALFEEKYGDEVRAISIGETSDARYYSFELCGGTHVKYTGDIGAFRILSE 701 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QL 772 S+I AG+RRIEAI G+ E L +A V++ ++ +++ I EE L + Sbjct: 702 SAIAAGVRRIEAIAGKHVIKQARQNSELLDLIAEKFSVTKQTIMSKIDGIIEENNLLKKQ 761 Query: 773 IHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 +H + QL + + +AD + + I + D + ++ + K IQ+ ++M+V Sbjct: 762 LHQLKYNQLILCEKDIQNMADNIGKIKLVYKNIEDYDLQIVRKAVSNTTKNIQN-LVMVV 820 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + +KK++++I V++++ ++ A +L + +GG GGG +AQ G Sbjct: 821 ISNNDKKSTIIIGVSDNITNKIQANNLVKEIINYIGGSGGGSAT-LAQIG 869 >gi|2500961|sp|Q56273|SYA_THIFE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|1263913|emb|CAA64818.1| alanyl-tRNA synthetase [Acidithiobacillus ferrooxidans] Length = 877 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/887 (44%), Positives = 532/887 (59%), Gaps = 39/887 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +IR FLE+F + GH+++PSS LIP NDPTL+FTN+GMVPFK++F G E Y+ Sbjct: 2 QAQAIRQAFLEYFVEQGHQIVPSSPLIPRNDPTLLFTNAGMVPFKDVFLGLETRPYRRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK I AW LT+ L Sbjct: 62 SSQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGFAWRFLTERLGLPP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L+ITVY+ED+EA +W G+ ++ R DNFWSM +TGPCGPCSEIF+D G Sbjct: 122 EKLWITVYEEDDEAADIWMNEIGVDPARLSRCGEKDNFWSMGDTGPCGPCSEIFYDHGPH 181 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 IPGG PGS EE G+RYIEIWNLVFMQF++ + LPK S+DTGMGLER+A VLQ Sbjct: 182 IPGGPPGSPEEDGDRYIEIWNLVFMQFDRDSSGTLTPLPKPSVDTGMGLERLAAVLQGVH 241 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYD DLFK LI A+ ++G Y + ++ RV+ DH+R+ SFLI DG+LPANEGRGY Sbjct: 242 NNYDTDLFKPLIAAAAAISGKTYGSDAATDISLRVLADHIRACSFLITDGVLPANEGRGY 301 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + R LG L+ L EMGSA+PEL +A+ +E L E+ RF Sbjct: 302 VLRRIIRRAVRHGRKLGMETVFFHQLVAPLVAEMGSAFPELTRAQREVERALEREETRFR 361 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RGL LL+ ++ L + G++ F+L DT G P+D+ DI R L +D+ + Sbjct: 362 ETLERGLSLLEEAIADLAAGAAIPGEIIFRLADTFGFPVDLTADIARERDLI-MDMEGYE 420 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+ ++RS G G TE+++ L + T+F GY Sbjct: 421 AAMADERSPLPCRLGGSGEVKTERVYHDLAMRLPVTEFTGYS------------------ 462 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 T V A+++ GE V +G V+ D+TPFY E+GGQ GD G + Sbjct: 463 -----TCADEGKVVALIRDGEEVAFLEAGDMGVVILDRTPFYGESGGQAGDRGELQSNDA 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +TD QK + VH VE G L+ +V ++D RR + +HSATHLLH AL Sbjct: 518 LFAVTDTQKPMGHLHVHLGRVESGRLQIGDMVVASVDEVARRATAAHHSATHLLHAALRN 577 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSHV Q GS + P+ LRFD +H +P+T+A+L+ IE VN I N+ TRI+ +A Sbjct: 578 ILGSHVQQKGSLVNPERLRFDFSHPEPVTAAQLREIERVVNAAIRNNVGAETRILPVAEA 637 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA AL G KY D VRVV + G S LCGGTHV + G+I + I+SES + AG Sbjct: 638 QALGAMALFGEKYGDEVRVVRM-----GDFSMELCGGTHVEALGDIGVFKILSESGVAAG 692 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777 IRRIEA+TG A + +E+L++ A LKV+ + R+ + E R+L +L KR Sbjct: 693 IRRIEAVTGAVALEAIQRDEERLQAAAGLLKVAPAELDQRLAQTLERLRQLEKELEKVKR 752 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + + DV + +I + D K L+ +D L+ ++ G+I+L G+ +EK Sbjct: 753 DEAVRAGAGLAAEAEDVGGVPVLIRRLEGMDGKALRDALDRLRSQLPDGVIVLAGVEREK 812 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 A ++ V + L R +A +L A+ L GG GGGRP +AQ+G N Sbjct: 813 VA-LIAGVGKGLTGRVHAGELVNTVAQPL-GGKGGGRPELAQAGAGN 857 >gi|332140622|ref|YP_004426360.1| alanyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550644|gb|AEA97362.1| alanyl-tRNA synthetase [Alteromonas macleodii str. 'Deep ecotype'] Length = 865 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/901 (44%), Positives = 551/901 (61%), Gaps = 48/901 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + +R F+ +F+ +GH+ + SSSL+P +DPTL+FTN+GM FK+ F G EK Y Sbjct: 4 STADLRNKFINYFKSHGHQAVASSSLVPADDPTLLFTNAGMNQFKDTFLGTEKRSYTRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ AW+ LT E L + Sbjct: 64 SSQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEAIEFAWNFLTSEVGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TVY ED+EAF +W+ G+ +KIIRI+T+DNFWSM +TGPCGPCSEIF+D G Sbjct: 124 EKLLVTVYSEDDEAFDIWENHIGVPKEKIIRISTSDNFWSMGDTGPCGPCSEIFYDHGAH 183 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PG+ EE G+R+IEIWNLVFMQF +Q LPK SIDTGMGLER++ +LQ Sbjct: 184 IWGGPPGTPEEDGDRFIEIWNLVFMQFNKQADGTMEPLPKPSIDTGMGLERISAILQNVH 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+IDLF++LI+++ + G + N + RVI DH+RS SFLI DG++P+NEGRGYVL Sbjct: 244 SNYEIDLFQNLIKSAASIVGTEDLENKSL--RVIADHIRSCSFLICDGVMPSNEGRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG + L+ +L EMG AYPEL+ +IE+ LR E+E+F KT Sbjct: 302 RRIIRRAVRHGYQLGANDIFFYKLVASLANEMGEAYPELVDQLPVIEKVLRVEEEQFSKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG+ +L+ L+ L D + GDV FKLYDT+G P D+ D+ L ID F A Sbjct: 362 LARGMAMLNDTLASLEGDTV-PGDVVFKLYDTYGFPTDLTNDVAREHELK-IDEEGFEAA 419 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++ QR+RA+ S G+ K+ T F GY + G + E Sbjct: 420 MQAQRARAQQAS-NFGADYNSKLAID-----HTTSFTGYTDVEGQANVVE---------- 463 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 ++ VE+ GQ+ VV D TPFYAE+GGQ GD G Sbjct: 464 -------------LIADNAFVEKLEDGQEGVVVLDSTPFYAESGGQAGDKGVLRVANGEF 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +TD QK F H I + + + + + ID NR + NHSATHLLH AL IL Sbjct: 511 IVTDTQKMGNA-FAHKGIAKGSVSKGDTATA-AIDSANREAIKKNHSATHLLHAALREIL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV+Q GS + +RFD +H + +T+ +L IE VN I N + T +M+ E+A A Sbjct: 569 GEHVTQKGSLVEAPRMRFDFSHFEAVTTEQLAEIERRVNQEIRANHSLATELMDLEEAKA 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL G KY+++VRVV++ G S LCGGTHV+ TG+I L I SE+ I +G+R Sbjct: 629 SGAMALFGEKYDEKVRVVTM-----GPFSVELCGGTHVARTGDIGLFKITSEAGIASGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKL 779 RIEA+TG++A + Q L SL+S LK NV+ RV + + ++L+ L AK+KL Sbjct: 684 RIEAVTGEQAIEVVQTQQATLSSLSSLLKTDSQNVLERVVSLQNQTKELEKALNSAKQKL 743 Query: 780 --QLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 Q + LS +I V + + V++K L+S+MD ++ +I GI++L G++ K Sbjct: 744 ASQQGADMLSNAVEINGVKVLIANLEGVEAKSLRSMMDDIKNRIGEGIVVL-GVANNAKV 802 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +++ VT++L D+ A +L A + GG GGGRP MAQ+GG QA+ V +L Sbjct: 803 NLIAGVTKNLTDKVKAGELVNFVASQV-GGKGGGRPDMAQAGGDKPENLGQALDSVNVWL 861 Query: 897 K 897 + Sbjct: 862 Q 862 >gi|294626627|ref|ZP_06705224.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665630|ref|ZP_06730907.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599047|gb|EFF43187.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604576|gb|EFF47950.1| alanyl-tRNA synthetase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 882 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/909 (43%), Positives = 541/909 (59%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ AK + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGVDAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V AI++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 475 -----------------VVAILRQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ +++ D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGPGVSIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDTQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + +G+RRIEA+TGQ A ++ ++ +L A+ L + VV +V + E ++L +L Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTTEVVDKVRALTERQKRLEREL 752 Query: 773 IHAKRKLQLNV-EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL I A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGARAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K A V V L +++++ GG GGGRP +AQ GG +G A+ Sbjct: 813 ASGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV ++K+ Sbjct: 871 DGVPLWVKQ 879 >gi|325924500|ref|ZP_08186019.1| alanyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865] gi|325544995|gb|EGD16330.1| alanyl-tRNA synthetase [Xanthomonas gardneri ATCC 19865] Length = 882 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/909 (43%), Positives = 541/909 (59%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAISWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIQESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLIPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+ID+F+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGVADLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQATVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S E++ G AF+L+DT+G P+D+ DI RGL +D Sbjct: 366 EERFAETLDAGMKIFDDVASR--AQEVIPGADAFRLFDTYGFPVDLTSDIARERGLR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVATMSPTVFLGYEAYDADALK----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 475 -----------------VVALLKQGRPVERADAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ + I D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGTGVSIDIADTQKFAGQFHGHVGRITEGALALGDVLSGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + +G+RRIEA+TGQ A ++ ++ +L A L + VV +V + E ++L +L Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752 Query: 773 IHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL S +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K A V V L +++++ GG GGGRP +AQ GG +G A+ Sbjct: 813 ASAGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV S++K+ Sbjct: 871 DGVHSWVKQ 879 >gi|329902133|ref|ZP_08273037.1| Alanyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] gi|327548856|gb|EGF33484.1| Alanyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 869 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/905 (42%), Positives = 542/905 (59%), Gaps = 56/905 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH ++ SS LIP NDPT++ TNSGMV FK++F G ++ Y T+V Sbjct: 4 TEIRAKFLKFFESKGHTIVRSSPLIPGNDPTMLLTNSGMVQFKDVFLGTDQRAYSRATSV 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT + L + + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTNVYLLPKEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W G+ ++IIRI N DNFW MA+TGPCGPCSEIF+ Sbjct: 124 LWVTVYHEDDEAYAIWANEIGIPTERIIRIGDNKGARYASDNFWQMADTGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS+EE G+R+IEIWNLVFMQF + + LPK +DTGMG+ER+A + Sbjct: 184 DHGPEIWGGPPGSAEEDGDRFIEIWNLVFMQFNRDEQGNMPRLPKPCVDTGMGMERLAAI 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF++LI+A+ + TG G+N + +VI DH+R+ +FLI DGI+PA+EG Sbjct: 244 LQHVHSNYEIDLFQNLIKAAARETGTTDLGDNSL--KVIADHIRACAFLIVDGIIPASEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 GYVLRRI+RRA+ + LG +P L+ L EMG AYPEL QA + +E+ LR E+E Sbjct: 302 HGYVLRRIIRRALRHGHKLGQAKPFFYLLVKDLVIEMGEAYPELTQAAVRVEQVLRQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RFG+TL+ G+ +L+ L L L+G AF LYDT G PLD+ DI C +D Sbjct: 362 RFGETLEHGMKILEAAL--LVTPTQLDGQTAFTLYDTFGFPLDLTADI-CRERKVELDEA 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN A+E+QR+ ARA K+ +++ T+F+GYD L Sbjct: 419 GFNVAMEQQRTTARAAG-------KFKMAAAVEYSGDKTRFVGYDALE------------ 459 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S+ V A+ G V +GQ+ VV D TPFYAE+GGQ+GDTG G Sbjct: 460 -----------QSAGVIALYVNGTAVPRMTAGQEGIVVLDVTPFYAESGGQVGDTGMLTG 508 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++ + D + +F HH + G L + +D R + NHSATHL+H A Sbjct: 509 AAVQFHVADTLRIQSEVFGHHGTLAGGTLSVGDKVAANVDPVARGRTIRNHSATHLMHKA 568 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG+HV+Q GS + D RFD +H+ P+T+ E++ +E VN I N+ R+M Sbjct: 569 LREVLGAHVAQKGSLVDTDKTRFDFSHNGPLTADEIRQVELIVNREILANVATEARVMPY 628 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DA+ GA AL G KY D VRV+ + S LCGG HV TG+I L I +ES + Sbjct: 629 DDAVKYGAMALFGEKYGDEVRVLGIG------SSKELCGGVHVDRTGDIGLFKITAESGV 682 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 AGIRR+EA+TG+ A + + +++ A+ LKV + R+ ++ ++ R L+ + Sbjct: 683 AAGIRRVEAVTGEGALALVQALSRQMQDAAAILKVQPDELSQRIGQVQDQVRSLEKDVSA 742 Query: 775 AKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L N D + D + ++ ++ D L+ MD L+ K+++ I+L ++ Sbjct: 743 LKSRLAANQGDELLGQAVDIKGIKVLAAVLLGADVAALRVTMDKLKDKLKTAAIVLAAVN 802 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K S++ VT D R A +L A + GG GGGRP MAQ+GG + + A+ G Sbjct: 803 -DGKVSLIAGVTADATSRIKAGELVNFVALQV-GGKGGGRPDMAQAGGTDPSGLAAALLG 860 Query: 892 VASFL 896 V ++ Sbjct: 861 VPGWV 865 >gi|167570231|ref|ZP_02363105.1| alanyl-tRNA synthetase [Burkholderia oklahomensis C6786] Length = 874 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/910 (42%), Positives = 537/910 (59%), Gaps = 55/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y TT Sbjct: 3 AAEIREKFLRFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 63 SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPAD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L++TVY +D+EA+ +W K G+ A +IIRI N DNFW M +TGPCGPCSEIF Sbjct: 123 KLWVTVYHDDDEAYDIWAKEVGVPAGRIIRIGDNKGARYASDNFWQMGDTGPCGPCSEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 183 YDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 VLQ +NY+IDLF++LI+A+ + TG+ NN + +VI DH+R+ SFLI DG++P NE Sbjct: 243 VLQHVHSNYEIDLFQNLIKAAARETGIGDLTNNSL--KVIADHIRACSFLIVDGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A + + LR E+ Sbjct: 301 GRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGEAYPELKEAGQRVTDVLRQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T++ G+ +L+ L L + L+G++AFKL+DT+G PLD+ D+ RG+ + Sbjct: 361 ERFFETIEHGMSILEAALGDLESKGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F+ A+ QR +ARA K L T F GY+ + +D Sbjct: 420 DEPAFDDAMARQREQARA-------AGKFKATQGLDYSGAKTTFHGYE-----EIAFDDA 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 KVV-----------------ALYIDGSSVNEVKAGQSAVVVLDHTPFYAESGGQVGDQGV 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K + HH +E+G L+ + ID R + + NHSATHL+ Sbjct: 511 LANAVTRFAVADTLKVQADVIGHHGELEQGALKVGDVVRAEIDAARRARTARNHSATHLM 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + R+ Sbjct: 571 HKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVRV 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A+ GA AL KY D VRV+ + + S LCGGTHV TG+I IV+E Sbjct: 631 MPYDEAVKGGAMALFDEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGFFKIVAE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L + Sbjct: 685 GGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLEKE 744 Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D L ++ V+ ++ + D+K L+ +D L+ K+++ I+L Sbjct: 745 LAALKSKLASSQGDELALQAIEVGGVHVLAATLDGADAKTLRETVDKLKDKLKNAAIVLA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S++ VT + + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 805 AVDG-GKVSLIAGVTPEASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPAA 862 Query: 889 IAGVASFLKK 898 +AGV ++++ Sbjct: 863 LAGVKGWVEE 872 >gi|325121489|gb|ADY81012.1| alanyl-tRNA synthetase [Acinetobacter calcoaceticus PHEA-2] Length = 883 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/914 (44%), Positives = 536/914 (58%), Gaps = 60/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 9 AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT E L + Sbjct: 69 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 129 DKLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GGLPGS EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 189 FFDHGDHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HL++A+ + G++ +G + RV+ DH RS FLIADG+ P+N Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDQGQPSL--RVVADHARSCCFLIADGVNPSN 306 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL E Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGDAYPELAARKDVIEATLIRE 366 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L KD+ + G FKLYDT+G P D+ DI R ID Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDFI-ID 424 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + ++ + G TQF GY Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 I+ T G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 465 -------IN-TTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D KK+ G FVH IV G L+ + ++ + R + NHSATHLLH Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGSLKADQNVEAIVKADIREATARNHSATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILGSHV Q GS + D LRFD + +P+T +L+ +E VN I N V T ++ Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANSAVTTELL 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I SE Sbjct: 635 DIEAAKAKGAMMLFGEKYGDEVRVLSMGSIIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEA+TG +A + D ++ + S LK + V RV+ E LQ Sbjct: 695 GGVAAGVRRIEAVTGTKALDVVQKTDADIQHINSLLKAQKDQTVERVQANVELVSALQ-- 752 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K+ QLN +L IA + + VD+K L+++ D+++ K+++ + Sbjct: 753 --KQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAV 810 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTATLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868 Query: 885 ADQAIAGVASFLKK 898 Q IA + ++L++ Sbjct: 869 FGQVIAALPAWLEQ 882 >gi|58582562|ref|YP_201578.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624448|ref|YP_451820.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575923|ref|YP_001912852.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A] gi|75434894|sp|Q5GYM8|SYA_XANOR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123521587|sp|Q2P1N1|SYA_XANOM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830287|sp|B2SUD0|SYA_XANOP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|58427156|gb|AAW76193.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368388|dbj|BAE69546.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520375|gb|ACD58320.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 882 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/909 (43%), Positives = 541/909 (59%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGRGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQIWKLPT 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ AK + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GY+ Sbjct: 423 MEGFECAMERQRETARAAG-KFGGGVA--LPADLVASMSPTVFLGYEAYDADALR----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 475 -----------------VVALLKQGRPVERAQAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ +++ D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 NGPGVLIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772 + +G+RRIEA+TGQ A ++ ++ +L A L + VV +V + E ++LQ L Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLQREL 752 Query: 773 IHAKRKLQLNV-EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL I A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGAAAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S K A V V L+ +++++ GG GGGRP +AQ GG +G A+ Sbjct: 813 ASGGKVALVSGVNGSPTGKVKAGELLSNIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV ++K+ Sbjct: 871 DGVPLWVKQ 879 >gi|21231177|ref|NP_637094.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|24418692|sp|Q8P9X0|SYA_XANCP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21112818|gb|AAM41018.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 882 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/909 (43%), Positives = 547/909 (60%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF+LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVALPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+ID+F+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIADLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG + ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S EI+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GY+ +D Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVATMAPTVFLGYE--------AQDAD 471 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 L V A+++QG V+ A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 472 ALK--------------VVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + +++ D QK A H + G L+ L ID Q R + +NHSATHLLH Sbjct: 518 SGTDVSIEVADTQKFAGQFHGHVGRIAEGALKLGDVLSGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY +RVRV+ + G +S+ LCGGTHVS TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + +G+RRIEA+TGQ A ++ ++ +L A+ L + +V +V + + ++L +L Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAANLLGGNSTEIVDKVRALTDRQKRLEREL 752 Query: 773 IHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL S +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K A V V L +++++ GG GGGRP +AQ GG +G A+ Sbjct: 813 AAGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV S++K+ Sbjct: 871 QGVPSWVKQ 879 >gi|188991930|ref|YP_001903940.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. B100] gi|205830286|sp|B0RTY1|SYA_XANCB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167733690|emb|CAP51895.1| unnamed protein product [Xanthomonas campestris pv. campestris] Length = 882 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/909 (43%), Positives = 546/909 (60%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF+LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+ID+F+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIADLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG + ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S EI+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GY+ +D Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVATMAPTVFLGYE--------AQDAD 471 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 L V A+++QG V+ A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 472 ALK--------------VVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G I +++ D QK A H + G L+ L ID Q R + +NHSATHLLH Sbjct: 518 SGTDISIEVADTQKFAGQFHGHVGRIAEGTLKLGDVLSGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY +RVRV+ + G +S+ LCGGTHVS TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + +G+RRIEA+TGQ A ++ ++ +L AS + +V +V + + ++L +L Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAASLFGGNSTEIVDKVRALTDRQKRLEREL 752 Query: 773 IHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL S +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K A V V L +++++ GG GGGRP +AQ GG +G A+ Sbjct: 813 AAGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV S++K+ Sbjct: 871 QGVPSWVKQ 879 >gi|262375452|ref|ZP_06068685.1| alanyl-tRNA synthetase [Acinetobacter lwoffii SH145] gi|262309706|gb|EEY90836.1| alanyl-tRNA synthetase [Acinetobacter lwoffii SH145] Length = 892 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/928 (43%), Positives = 532/928 (57%), Gaps = 78/928 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 4 AEIREAFLRYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT E L + Sbjct: 64 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNEEWLGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY TVY D+EAF +W K GL A +IIRI N DNFW+M +TGPCGPCSEI Sbjct: 124 DKLYATVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD GE I GGLPG+ EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGEHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNIVNH----RVIVDHLRSS 282 VLQ +NY+IDLF+HL++A+ ++ G+ E V + +V+ DH RS Sbjct: 244 AVLQHVNSNYEIDLFQHLLKAAAEIIGLNTTALEAEAAEKGTPVQYPASLKVVADHARSC 303 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 SFLIADG+ P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL Sbjct: 304 SFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGSFFHKMLKPLIEVMGDAYPELAA 363 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 + IE L E+E+F KTL++GL LL+G L+ L K ++ G+V FKLYDT+G P D+ Sbjct: 364 QQARIEAQLLKEEEQFAKTLEQGLKLLEGELAQL-KGSVIPGEVVFKLYDTYGFPTDLTA 422 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 DI R L ID F + QR RAR +G + S+ + G TQF GY Sbjct: 423 DIARERDLT-IDEAGFETEMAAQRQRAR------DAGKFAIDYNSVVKVEGETQFDGY-- 473 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 D T G I+ AI + GE V+E G + +V +QTPFYA Sbjct: 474 --------------------DATAGEGQII-AIYKDGEQVDEVFEGDEALIVLNQTPFYA 512 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+GDTG D ++ D KK+ G FVH IV G L+ ++ T+ R Sbjct: 513 ESGGQIGDTGIFKNDTGIFEVQDT-KKSGGAFVHQGIVTMGNLKVTQNVEATVKADIRAA 571 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NHSATHLLH AL ILGSHV Q GS + D LRFD + +P++ +L+ IE VN Sbjct: 572 TARNHSATHLLHAALRQILGSHVQQKGSLVASDVLRFDFANDQPVSFEQLQEIERLVNAE 631 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----HSSALCGGT 697 + N V T +++ E A A GA L G KY D VRV+S+ G V S LCGG Sbjct: 632 VIANTAVSTELLDIESAKAKGAMMLFGEKYGDEVRVLSM----GSVIEEKNFSIELCGGI 687 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV TG+I L I SE + AG+RRIEA+TG +A D + + LK + + Sbjct: 688 HVKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKAVEVAQKADRDINMINGLLKAQKDQTL 747 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLS---------CHKIADVNFMSHIISEVDSKE 808 +VE + + LQ K+ QLN + S IA + + +D+K Sbjct: 748 EKVEALVDTASSLQ----KQIEQLNQKLASLQAGELLSQVQSIAGRATLITTVENMDAKA 803 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868 L+++ D ++ K+++ +I+L G+ + K S++ V +D A D+ + A L GG G Sbjct: 804 LRNLHDGVKSKLENAVIVLAGVEGD-KVSLIASVAKDFTASIKAGDIIKHLANEL-GGKG 861 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GG+P +AQ G P K +A + ++L Sbjct: 862 GGKPDLAQGGAPLNEKFAPVMADLTAWL 889 >gi|85058516|ref|YP_454218.1| alanyl-tRNA synthetase [Sodalis glossinidius str. 'morsitans'] gi|123520018|sp|Q2NVL2|SYA_SODGM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|84779036|dbj|BAE73813.1| alanyl-tRNA synthase [Sodalis glossinidius str. 'morsitans'] Length = 875 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/910 (43%), Positives = 558/910 (61%), Gaps = 58/910 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G + Y+ T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDNRFYRRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRFAWELLTGEHWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+EA+ +W G+ A++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYATDDEAYNIWASEVGIPAERIIRIGDNKGSAYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS EE G+RYIEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTLLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLFK LI A+ + TG + + RVI DH+RS FL++DG++P Sbjct: 244 IAAVLQHVNSNYDIDLFKTLIAAAAEATGASDPDSKSL--RVIADHIRSCVFLVSDGVVP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG ++ L+ L MGSA +L + ++E+ LR Sbjct: 302 SNEGRGYVLRRIIRRAIRHGNMLGASDTFFYKLVAPLIDVMGSAASQLQPQQAMVEQVLR 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G LD+ D+ R L Sbjct: 362 AEEEQFARTLERGLTLLDDELAKLTGD-TLDGETAFRLYDTYGFSLDLTADVCRERNLR- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E QR RAR S G G+ + SL T+F GY+ L Sbjct: 420 VDEAGFERAMEAQRKRARESS-GFGAD-----YNSLLRVDETTRFFGYEHLEH------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V A+ + G++V G++ VV D+TPFY E+GGQ+GD G Sbjct: 467 ----------------QGRVTALFRDGQLVGVIRQGEEAVVVLDETPFYGESGGQVGDRG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK + F H + G L+ + +D R ++ +NHSATHL Sbjct: 511 VLKAASGVFEVADTQKYGKA-FGHQGKLSYGELKLGAQVTAQVDSARRERIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + LRFD +H++ + +++ +E+ VN+ I NLP+ T Sbjct: 570 LHAALRQVLGDHVGQKGSLVNDHYLRFDFSHNEAMKPEQIRRVEEIVNEQIRCNLPIQTD 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM EDA GA AL G KY +VRV+S+ G S+ LCGGTH S TG+I L I++ Sbjct: 630 IMALEDARNKGAMALFGEKYEAQVRVLSM-----GDFSTELCGGTHASRTGDIGLFRIIA 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A + L Q + ++ +A +K +V +V + E R+L+ Sbjct: 685 ESGTAAGIRRIEAVTGEEALASLHQQSDLVQHIAQLVKGDSQTLVDKVRALQERSRQLEK 744 Query: 773 IHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827 + K Q ++ + + D+N + ++ ++DS E L++++D L+ ++ S +I+L Sbjct: 745 DLQQLKNQQAAQESASLGRNVRDINGVKVLVRQLDSAEPKMLRTMVDDLKNQLGSAVIIL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++ E K S++ VT+DL DR A D+ L+ +V GG GGGRP +AQ+GG + Sbjct: 805 ATVA-EGKVSLIAGVTKDLTDRVKAGDIVGHLAQQV--GGKGGGRPDLAQAGGSDIAALP 861 Query: 887 QAIAGVASFL 896 A+A V + L Sbjct: 862 AALASVDAML 871 >gi|83719349|ref|YP_443176.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264] gi|167620352|ref|ZP_02388983.1| alanyl-tRNA synthetase [Burkholderia thailandensis Bt4] gi|257139409|ref|ZP_05587671.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264] gi|123536505|sp|Q2SV73|SYA_BURTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83653174|gb|ABC37237.1| alanyl-tRNA synthetase [Burkholderia thailandensis E264] Length = 874 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/911 (42%), Positives = 544/911 (59%), Gaps = 55/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTL+FTNSGMV FK++F G E Y T Sbjct: 2 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGAETRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + L Sbjct: 62 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTTVYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY +D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPCSEI Sbjct: 122 DKLWVTVYHDDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMGDTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 182 FYDHGPGVWGGPPGSPEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ LI+AS + TG+ NN + +VI DH+R+ SFLI DG++P N Sbjct: 242 AVLQHVHSNYEIDLFQQLIKASARETGVADLANNSL--KVIADHIRACSFLIVDGVIPGN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG P L+ L EMG+AYPEL +A+ + + LR E Sbjct: 300 EGRGYVLRRIVRRAIRHGYKLGRKGPFFHKLVADLVAEMGAAYPELKEAEQRVTDVLRQE 359 Query: 355 DERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ + L+G++AFKL+DT+G PLD+ D+ RG+ Sbjct: 360 EERFFETIEHGMSILEAALADLDAAGGKTLDGELAFKLHDTYGFPLDLTADVCRERGVT- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 419 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V E +G+ VV D TPFYAE+GGQ+GD G Sbjct: 467 AKVV-----------------ALYVEGASVGEVKAGESAVVVLDHTPFYAESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G+L+ ++ ID R + + NHSATHL Sbjct: 510 VLANAATRFAVADTLKVQADVIGHHGELEQGVLKVGDAVRAEIDAARRARTARNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VN+ + N P + R Sbjct: 570 MHKALRDVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEAIVNEQVLANAPGIVR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M +DA+ GA AL G KY D VRV+ + + S LCGGTHV TG+I L IV+ Sbjct: 630 VMPYDDAVKGGAMALFGEKYGDEVRVLDLGF------SRELCGGTHVHRTGDIGLFKIVA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AGIRR+EAITG A ++ D ++ + A+ LK ++ R+ ++ ++ + L Sbjct: 684 EGGVAAGIRRVEAITGDNAVRYVQALDARVNAAAAALKAQPSELIQRIGQVQDQVKSLEK 743 Query: 771 QLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K KL + D + + V+ ++ + D+K L+ +D L+ K++S I+L Sbjct: 744 ELGALKSKLASSQGDELAQQAVEVGGVHVLAATLDGADAKTLRETVDKLKDKLKSAAIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 804 AAVDG-GKVSLIAGVTADASKKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPANLPA 861 Query: 888 AIAGVASFLKK 898 A+AGV ++++ Sbjct: 862 ALAGVKGWVEE 872 >gi|170717275|ref|YP_001784390.1| alanyl-tRNA synthetase [Haemophilus somnus 2336] gi|205830062|sp|B0UTE1|SYA_HAES2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|168825404|gb|ACA30775.1| alanyl-tRNA synthetase [Haemophilus somnus 2336] Length = 874 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/914 (42%), Positives = 547/914 (59%), Gaps = 58/914 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G + Y Sbjct: 1 MKTTAEIRQAFLDFFHSKGHQIVDSSSLVPENDPTLLFTNAGMNQFKDVFLGLDTRSYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--F 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWEFLTSPEWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ + IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPEEKLYVTVYETDDEAYGIWHKGVGVPENHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D GE + GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGEHVWGGLPGSEEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER++ V+Q +NYDID+F+ LI ++TG K N + RVI DH+RS ++LI DG+ Sbjct: 241 ERISAVIQHVNSNYDIDIFQKLIAKVAELTGEKDLTNKSL--RVIADHIRSCAYLIVDGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NEGRGYVLRRI+RRA+ + LLG + L+P L M +A ++ + +E+ Sbjct: 299 IPSNEGRGYVLRRIIRRAVRHGHLLGAKDTFFYKLVPVLIDVMATAGKDVKAKQANVEKL 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 LR E+E+F +TL+RGL LLD L ++ KD +L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LRLEEEQFARTLERGLALLDEALINV-KDGVLSGEVAFKLYDTYGFPLDLTADVCRERNI 417 Query: 411 AGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F + +E QR RA+A S G+ ++ G T F GY Sbjct: 418 R-IDEEGFEREMEVQRLRAQAASRFGVDYNNVIRV-------EGTTTFEGYTEAE----- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + V A+ +G+ VE +GQ V+ D TPFYAE+GGQ+G Sbjct: 465 ------------------TQAKVTALFYEGKSVESISAGQSAVVILDDTPFYAESGGQIG 506 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D GC I +R + D QK + +F H + +G L ++ +D ++R + S+NHSA Sbjct: 507 DRGCLIATNMRFDVKDTQKYGQ-VFGHIGTLIQGTLNVGQTINAVVDTEHRIKTSLNHSA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LGSHV+Q GS ++ LRFD + I+ +L IE VN I N V Sbjct: 566 THLLHAALRQVLGSHVAQKGSLVSDTILRFDFAQPEAISQEQLFEIECLVNQHIRANHLV 625 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 VT +M ++A A GA AL G KY D VRVV + G S LCGG HV TGEI L Sbjct: 626 VTEVMPIDEAKAKGAMALFGEKYGDVVRVVKM-----GEFSIELCGGIHVKRTGEIGLFK 680 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IVS S+I AG+RR+EA+TG+ A + L Q L A LK ++V +++++ ++ +K Sbjct: 681 IVSGSAIAAGVRRVEAVTGEGAINWLQQQQVLLMQSADLLKSDANSLVEKIQQLQDKAKK 740 Query: 770 ----LQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 LQ + K ++ + S +I V+ + + +D K L+ ++D L+ ++ S + Sbjct: 741 TEKELQALKEKSAMKAGSDIAKSAVEINGVSVIVQQLENMDVKSLRVIVDDLKNQLGSAV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I V E K ++++ VT DL + A +L L A+ + GG GGGRP MA +GG Sbjct: 801 IAFV-TKNEDKVNLVVGVTTDLTSKVKAGELVNLMAQQV-GGKGGGRPDMAMAGGSQPEN 858 Query: 885 ADQAIAGVASFLKK 898 +A+ +L K Sbjct: 859 ISKALTVCNEWLHK 872 >gi|190573725|ref|YP_001971570.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia K279a] gi|205830222|sp|B2FL33|SYA_STRMK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|190011647|emb|CAQ45266.1| putative alanyl-tRNA synthetase [Stenotrophomonas maltophilia K279a] Length = 882 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/899 (43%), Positives = 552/899 (61%), Gaps = 61/899 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ LW+ + G+ ++I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGVPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI+ + ++TG N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTADLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P L+P L +MG AYPEL A + L++E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAVDTVTRALQAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + ++ G AF+LYDT+G PLD+ QDI R L +D Sbjct: 366 EERFAETLDAGMKIFEDVAGK-ASNGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 I F+ A+E+QR ARA G G T + L T F+GYD L+ Sbjct: 424 IAGFDAAMEQQRETARAAGK-FGGGVT--LPAELVATLSPTLFLGYDRLQ---------- 470 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +G++ V A+++ G V+ A +G V V+ +QTPFYAE+GGQ+GDTG Sbjct: 471 ----------ADGLT--VLALLKDGRPVQSADAGDAVIVITNQTPFYAESGGQVGDTGVL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+G+RL + D QK A H + G L+ L +D + R +NHSATHLLH Sbjct: 519 TGNGVRLAVDDTQKFAGQFHGHVGTLSEGGLKVGDVLSGQVDGERRGATILNHSATHLLH 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + PD LRFD +H +PI++ EL IE VN + N M Sbjct: 579 AALREVLGSHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHNM 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 639 GMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TGQ A ++ ++ +L A L S +VV ++ + + ++L+ Sbjct: 694 GVSAGVRRIEAVTGQGALDYVDAEEARLAEAAELLGGSAADVVEKIRALGQRQKQLE--- 750 Query: 775 AKRKLQ--------LNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 R+L+ DLS ++A V ++ + D+K L+ MD L++++ + Sbjct: 751 --RELEAVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAV 808 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I+L G +++ KA+++ V + + A + L+ +++++ GG GGGRP +AQ GG +G Sbjct: 809 IVLAG-AQDGKAALVAGVNGSAMGKVKAGELLSHIASQI--GGKGGGRPDLAQGGGEDG 864 >gi|148653409|ref|YP_001280502.1| alanyl-tRNA synthetase [Psychrobacter sp. PRwf-1] gi|205830185|sp|A5WFW1|SYA_PSYWF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148572493|gb|ABQ94552.1| alanyl-tRNA synthetase [Psychrobacter sp. PRwf-1] Length = 903 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/905 (42%), Positives = 545/905 (60%), Gaps = 62/905 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R F++FF H +PSSSL+P NDPTL+FTN+GM FK+ F G +K Y T Sbjct: 20 TADVRKAFIDFFVSKQHTHVPSSSLVPYNDPTLLFTNAGMNQFKDCFLGIDKRDYTRAVT 79 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT + LD Sbjct: 80 SQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKSAIAYAWEFLTSKQWLGLD 139 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +LY+T+Y+ D+EAF +W + GL+A++IIRI N DNFW+M +TGPCGPCSE Sbjct: 140 ADKLYVTIYESDDEAFDIWHQDIGLAAERIIRIGDNKGAPYASDNFWAMGDTGPCGPCSE 199 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 +F+D GE + GGLPG+ EE G+RYIE+WN VFMQF +Q LP S+DTGMGLER+ Sbjct: 200 VFYDHGEHVEGGLPGTPEEDGDRYIEVWNCVFMQFNRQPDGTMEPLPAPSVDTGMGLERI 259 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + +LQ +NY+IDLF +LI ++ + G+K +N + +V+ DH+R+ SFLIADG+LP+ Sbjct: 260 SAILQGVHSNYEIDLFVNLINSAADIIGIK--NDNQASLKVVADHIRAVSFLIADGVLPS 317 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + ++ L EMG AYP+L++ + IE+ + Sbjct: 318 NEGRGYVLRRIIRRAVRHGNKLGAEDSFFYKMVAPLVKEMGDAYPQLVEKQAFIEKAIEK 377 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ +F KTL +GL LLD L L ++L+G+ AFKLYDT+G P+D+ DI RG+ GI Sbjct: 378 EEVQFAKTLAQGLRLLDSELESLKSGDVLSGEAAFKLYDTYGFPVDLTADITRERGI-GI 436 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F++ + QR RAR +G + + + + T+F+GY+ L D Sbjct: 437 DEAGFDEQMNIQRQRAR------DAGKFDVDYSAAIKVETPTEFVGYEQL--------DE 482 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K + + + Q G+ VE G + +V D+TPFYAE GGQ+G+ G Sbjct: 483 KEVN--------------IIGLYQDGKEVEVLNEGDEGVIVLDRTPFYAEGGGQVGEMGE 528 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + D +K + F+HH +V G L+ + + R + NHSATHLL Sbjct: 529 IRTSSGVFNVEDTKKSGQA-FIHHGVVNMGSLQKSQTADAQVVSAIRSASARNHSATHLL 587 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG VSQ GS ++ + LRFD ++ ++ +L +IE VN+ I N+ + Sbjct: 588 HAALRKVLGDSVSQKGSLVSSEMLRFDFSYDNAVSQKDLATIERLVNEQIQANVETHIEL 647 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSV---EYEDG--GVHSSALCGGTHVSSTGEIMLL 708 MN +DA+A GAAAL G KY + VRV+++ E EDG S LCGG HV TG+I L Sbjct: 648 MNIDDAMAKGAAALFGEKYGETVRVLTMGTTEIEDGIQKPFSIELCGGLHVKRTGDIGLF 707 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SES I AGIRRIEA+TG A ++ D +L +LA+ LK + V RV+ + ++ R Sbjct: 708 KITSESGIAAGIRRIEALTGMGALRYIQQADSQLTALANQLKAKRPEVADRVQTMADKQR 767 Query: 769 KLQLIHAKRKLQLNVEDLSCHK---------IADVNFMSHIISEVDSKELKSVMDALQKK 819 +L+ K+ +LN + S IAD + ++ +D K ++ ++D ++ K Sbjct: 768 ELE----KQIERLNQKIASAQAATLVDNVQTIADKKVLIAQVAGIDGKAMRGLIDDIKSK 823 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +Q II+LVG K+ + ++ V++ L A D+ R A L G GGG+P AQ G Sbjct: 824 LQDTIIILVG-EKDGQLALAASVSKSLTGDIKAGDIIRHLADEL-EGKGGGKPDYAQGGA 881 Query: 880 PNGNK 884 P+ +K Sbjct: 882 PSSDK 886 >gi|307546333|ref|YP_003898812.1| alanyl-tRNA synthetase [Halomonas elongata DSM 2581] gi|307218357|emb|CBV43627.1| alanyl-tRNA synthetase [Halomonas elongata DSM 2581] Length = 868 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/885 (43%), Positives = 540/885 (61%), Gaps = 47/885 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F++ GH ++PSSSL+P NDPTL+FTN+GMVPFK++F G++ Y T+ Sbjct: 4 ADIRQAFLSYFEERGHSIVPSSSLVPDNDPTLLFTNAGMVPFKDVFLGRDPRPYVRATSA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+ L + + Sbjct: 64 QRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIHFAWNFLTEVLGLPREK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA ++WK G+ ++ R+ DNFW M +TGPCGP SE+FFD G + Sbjct: 124 LWVTVHVSDDEAERIWKDEVGIDPERFSRL-DEDNFWQMGDTGPCGPSSEVFFDHGPEVW 182 Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS EE G+RYIE+WNLVFMQ+++ LPK SIDTGMGLER+A V+Q +N Sbjct: 183 GGPPGSPEEDGDRYIEVWNLVFMQYDRDAAGNMNPLPKPSIDTGMGLERIAAVMQGVHSN 242 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y+IDLF++L+ A+ + TG ++ + + RVI DH+RS +FL+ADG+LP+NEGRGYVLRR Sbjct: 243 YEIDLFQNLLAAAAEATG--HDDTSAPSLRVIADHIRSCAFLVADGVLPSNEGRGYVLRR 300 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG L+ AL EMG AYPEL +A+ IE L E+E+F +TL+ Sbjct: 301 IIRRAVRHGHKLGAQGCFFHKLVAALDAEMGEAYPELREARDQIERVLLKEEEQFARTLE 360 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ LL L L D L G+ FKLYDT+G P D+ D+ RG++ +D F + LE Sbjct: 361 HGMGLLGEALDALEGD-TLPGETVFKLYDTYGFPFDLTADVCRERGVS-LDEAGFERELE 418 Query: 424 EQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 QR RARA S G+ G E G T F GYD L EDR Sbjct: 419 AQRERARAASQFGVDYGAA-------LELEGQTDFTGYDRL-------EDR--------- 455 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 +++V + +QG + + Q+ VV D+TPFY E+GGQ+GDTG +G R Sbjct: 456 ------ATVVALVDEQGNALARLEAEQRGVVVLDRTPFYGESGGQVGDTGYLELEGGRFL 509 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D QK+A G +H + G L S+ +D R NHSATHLLH AL +LG Sbjct: 510 VEDTQKQA-GHHLHQGRLLEGELEVGASVTPRVDPSLRAATVRNHSATHLLHQALRMVLG 568 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS +TP+ LRFD +H +P+T+ +L +E VN+ + N P M ++A Sbjct: 569 DHVQQKGSLVTPERLRFDFSHFEPMTAEQLAEVERLVNEQVLANAPTRIEHMTLDEAKEK 628 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GAAAL KY D VRV+++ +D S LCGGTHV+ +G+I +IV+E+ I +G+RR Sbjct: 629 GAAALFEAKYADSVRVLTIGADD---FSIELCGGTHVARSGDIGCCHIVAEAGIASGVRR 685 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEAITG+ A ++ Q+ ++ + LK V RV + E R+L+ + K +L Sbjct: 686 IEAITGEGALAYFREQEARVARIGERLKAKPEQVEERVTSLVERNRELEKELERLKAKLA 745 Query: 783 VEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KA 836 S H++ + ++ + V KEL+ ++D L+ K+ SG+++L ++ K Sbjct: 746 SAAGSDMLGEAHEVKGIKVLAKRLEGVSGKELRGLLDQLKNKLGSGVVVLGVGDEQAGKV 805 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S++ VT+DL R A +L A + GG GGGRP MAQ+GG + Sbjct: 806 SLIAGVTDDLTGRIKAGELVNHVASQV-GGKGGGRPDMAQAGGSD 849 >gi|17545516|ref|NP_518918.1| alanyl-tRNA synthetase [Ralstonia solanacearum GMI1000] gi|20532248|sp|Q8Y193|SYA_RALSO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|17427809|emb|CAD14499.1| probable alanyl-trna synthetase (alanine--trna ligase) (alars) protein [Ralstonia solanacearum GMI1000] Length = 884 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/921 (42%), Positives = 545/921 (59%), Gaps = 65/921 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 2 KASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 62 SVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSEI Sbjct: 122 DKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMG 229 F+D G I GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGMG Sbjct: 182 FYDHGPEIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPQTGEYTLTPLPAPCVDTGMG 241 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289 +ER+A +LQ +NY+IDLF+ L+ A+ + T K NN + RVI DH+R+ +FLI DG Sbjct: 242 MERLAAILQHVHSNYEIDLFQALVSAAARETNTKDLANNSL--RVIADHIRACAFLIVDG 299 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 ++P NEGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + Sbjct: 300 VIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVKEMGEAYPELREARDRVVD 359 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL---GKDE---ILNGDVAFKLYDTHGLPLDIMQD 403 LR+E+ RF +T++ G+ +LDG L L GKDE +L+G++AFKL+DT+G PLD+ QD Sbjct: 360 VLRTEEARFFETIEHGMSILDGALGELKAAGKDEKQRMLDGELAFKLHDTYGFPLDLTQD 419 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 + C +D +F+ A+ QR +ARA + +GT L T F GYD Sbjct: 420 V-CRENDVIVDEAAFDAAMNRQREQARAAGKFKMAAGT-------LDYTGDKTTFHGYDQ 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L +S V A+ G V E GQ VV D TPFYA Sbjct: 472 LLSE----------------------TSRVTALFVDGASVPEMRPGQTGVVVLDHTPFYA 509 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+GD G + + D QK +F H + G+L+ ++ +D R + Sbjct: 510 ESGGQVGDQGTLKAATVWFDVADTQKVLPEVFGHQGTLRTGVLKVGDAVGAEVDAVRRAR 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHSATHL+H AL +LG+HV Q GS + D RFD +H+ P+T +++ +E VN Sbjct: 570 TMRNHSATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNTPMTPLQIREVEARVNAE 629 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I N ++M +DA+ SGA AL G KY D VRV+++ S LCGGTHV+ T Sbjct: 630 ILANASTNAQMMGFDDAVKSGAMALFGEKYGDEVRVLTIG------SSKELCGGTHVART 683 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I L IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ + Sbjct: 684 GDIGLFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRIGEAAAALRAQPSELTQRIVQ 743 Query: 763 IWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQ 817 + ++ + L +L K KL + D + DV ++ + D+K L+ MD L+ Sbjct: 744 VQDQVKSLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLK 803 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K+++ I+L +S + K +++ VT D R A +L A+ + GG GGGRP MAQ+ Sbjct: 804 DKLKTAAIVLGSVS-DGKVALIAGVTADATARIKAGELVNFVAQQV-GGKGGGRPDMAQA 861 Query: 878 GGPNGNKADQAIAGVASFLKK 898 GG +K QA+AGV +++++ Sbjct: 862 GGTEPDKLPQALAGVTAWVQQ 882 >gi|88798293|ref|ZP_01113879.1| Alanyl-tRNA synthetase [Reinekea sp. MED297] gi|88779069|gb|EAR10258.1| Alanyl-tRNA synthetase [Reinekea sp. MED297] Length = 868 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/904 (42%), Positives = 551/904 (60%), Gaps = 51/904 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FLEFF+K+ H ++P+ SL+P +DPTL+FTN+GM FK++F G ++ Y TT Sbjct: 3 TSEIRRRFLEFFEKHEHRVVPAGSLVPGDDPTLLFTNAGMNQFKDVFLGTDRRDYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW LT+E L + Sbjct: 63 AQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIRFAWTFLTEELGLPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TVY +D+EA +W G+ +++ R+ DNFW M +TGPCGPCSEIF+D GE + Sbjct: 123 KLWVTVYQDDDEAADIWINDIGVDPNRLSRLGDKDNFWMMGDTGPCGPCSEIFYDHGEEV 182 Query: 184 PGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 PGG PGS ++ +RYIEIWNLVFMQF+ R LPK S+DTGMGLER+A +LQ + Sbjct: 183 PGGPPGSPDDDLDRYIEIWNLVFMQFDTLADGSRVPLPKPSVDTGMGLERLAAILQGVHS 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300 NY+IDLF+ LI+A+ +VTG +I N RVI DH+RS++FLIADG++P+NEGRGYV Sbjct: 243 NYEIDLFQALIRAAMRVTGC----TDIENRSLRVIADHIRSTAFLIADGVIPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG + + L+ L +MG AYPEL + + + L+ E+E+F + Sbjct: 299 LRRIIRRAVRHGYKLGCQDLFLFKLVDDLVDQMGEAYPELAEQADHVRKVLKIEEEQFAR 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+ G+ +L+ ++ + + ++ G++ FKLYDT+G P D+ D+ +GL ID F Sbjct: 359 TLENGMTILEQGIADI-EGNVIPGELVFKLYDTYGFPADLTADVAREKGL-DIDQDGFES 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQK 479 + EQR RA+ S K+ L GAT F+GY+ L + Sbjct: 417 RMAEQRKRAQ-------SANKFKMDRDLDLALDGATNFLGYETL------------AAEG 457 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I L G + V Q + +E V V+ DQTPFYAE+GGQ GD G + Sbjct: 458 QVIRLLRGEDT-----VSQLSVGDEGV------VILDQTPFYAESGGQAGDRGVITTEAA 506 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 L++ D QK +G F+H V G+L+T+ + + R + +HSATHLLH AL Sbjct: 507 SLEVIDCQKH-QGHFLHQVRVTDGVLKTDDRVAAKVQRNERENTARHHSATHLLHAALRE 565 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV Q GS +T D LRFD +H + +T+ EL IE VN I N V T +M+ + A Sbjct: 566 VLGTHVQQRGSLVTHDKLRFDFSHLEAVTAEELVQIETLVNHHIMANAEVTTELMDIDSA 625 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA AL G KY+D+VRV+++ + +S LCGGTHV TG+I L IV+ES I AG Sbjct: 626 KAAGAVALFGEKYDDQVRVLTMGED---AYSKELCGGTHVQRTGDIGLFRIVAESGIAAG 682 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRR+EA+ G A + + +D + L+ K S + +V++ + L+ +K K Sbjct: 683 IRRVEAVAGPYALAEIRQRDAVVNRLSGQFKCSVDQLESKVQQAVAHSKDLEKELSKLKD 742 Query: 780 QL---NVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L DL+ + V ++ + VD+K L+S MD ++ K+ S +I++V + E Sbjct: 743 KLASAAAGDLTSEVKDVQGVKVLAVRLDGVDAKSLRSTMDQMKSKLGSAVILIVAVDGE- 801 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K + VT+DL F A +L + L G GGG+P MA +GG + NK A+ V + Sbjct: 802 KVQLAAGVTKDLTATFKAGNLIK-DVGALMGAKGGGKPDMAMAGGGDINKIPDALQAVPT 860 Query: 895 FLKK 898 ++++ Sbjct: 861 WVEQ 864 >gi|212212531|ref|YP_002303467.1| alanyl-tRNA synthetase [Coxiella burnetii CbuG_Q212] gi|212010941|gb|ACJ18322.1| alanyl-tRNA synthetase [Coxiella burnetii CbuG_Q212] Length = 865 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/904 (42%), Positives = 556/904 (61%), Gaps = 52/904 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R TFL +F++ HE++P SSLIP NDPTL+FTN+GMV FK++F G E YQ Sbjct: 2 NSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT L Sbjct: 62 SIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLPP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +RL++TV+ +D E+ +W K ++ ++ R DNFW M +TGPCGPC+EIF+D G Sbjct: 122 QRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGST 181 Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PGS+E +GERY+EIWNLVFMQ+ + K L K S+DTGMGLER+A V+Q Sbjct: 182 ISGGPPGSAEADGERYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGVH 241 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NYDIDLF++L++A T +K E + + RVIVDH+RS +FLIADG++P+NEGRGYVL Sbjct: 242 DNYDIDLFQYLLKALR--TLLKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYVL 299 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG EP L L EMG AYP L +++ LIE+T++ E+ +F T Sbjct: 300 RRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEMQFSNT 359 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L +GL +LD ++ L +I G++ F+LYDT+G P D+ DI R +D F++A Sbjct: 360 LTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDFV-MDYAGFDKA 417 Query: 422 LEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E QR ++ +AH I G TQF+GY+ L Sbjct: 418 MERQREQSQQAHQFVANYAQKASIG-------GETQFVGYETL----------------- 453 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N ++++ +++Q + + +K VV D+TPFYAE+GGQ+GD G + Sbjct: 454 -----NSQANVI-SLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D +K+ + I++H + +G L + + +D +R + NHSATHLLH AL + Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDV-SRFDIMRNHSATHLLHEALRRV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG V Q GS + LRFD +H+KP+T EL+++E VN I NL +M E+A Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G +Y VRV+ + G S+ +CGGTH TGEI L IVSES AGI Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A ++ +++L+SL+ LK ++ N+ ++ +I E++RKL+ AK K + Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740 Query: 781 LNVEDLSC--HKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + L +++ DV+ + + + VD + L++++D L++K+ I+L I +E + Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799 Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 ++ VT++ L+ FNA + LA ++ KV GG GGRP +AQ G + A+A V Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV--GGRSGGRPDLAQGAGERPENLEAALAAVPK 857 Query: 895 FLKK 898 +++K Sbjct: 858 WIEK 861 >gi|242238445|ref|YP_002986626.1| alanyl-tRNA synthetase [Dickeya dadantii Ech703] gi|242130502|gb|ACS84804.1| alanyl-tRNA synthetase [Dickeya dadantii Ech703] Length = 875 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/909 (44%), Positives = 556/909 (61%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FFQ GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFQSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYVRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAILNAWELLTGPQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+EA+ +W + G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYATDDEAYDIWANVVGIPQERIIRIGDNKGAPYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NY+ID+F+ LI + +V G + N + RVI DH+RS +FLIADG++P Sbjct: 244 VSAVLQHVNSNYEIDVFRTLIAEAAKVVGTRDLNNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + ++E L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLIDVMGSAADELRTQQTVVELALK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 SE+E+F +TL+RGL LLD + L D L+G+ AF+LYDT+G PLD+ D+ RGL Sbjct: 362 SEEEQFARTLERGLSLLDEEIRTLQGD-TLSGEAAFRLYDTYGFPLDLTADVCRERGLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F + +E QR RAR S G G+ + SL AT F GYD E Sbjct: 420 VDETGFEREMEAQRQRAREAS-GFGAD-----YNSLIRVDSATTFCGYD-------HAEQ 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 R S V A+ ++GE V+E +G + V+ D+TPFY E+GGQ+GD G Sbjct: 467 R----------------SHVVALYRKGEPVQEISAGDEAVVILDETPFYGESGGQVGDQG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G + D QK F H + +G LR ++ +D R ++ +NHSATHL Sbjct: 511 VLKGVSAYFVVDDTQKYGRA-FGHVGKLTQGSLRVNDAVDAVVDDVRRDRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS + LRFD +H + + E++ +ED VN + +NLPV T Sbjct: 570 LHAALRQVLGTHVAQKGSLVNDRYLRFDFSHPEAMKPDEIRQVEDIVNAQVRRNLPVDTA 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM +DA A GA AL G KY+D+VRV+++ G S LCGG H TG+I L IVS Sbjct: 630 IMAIDDARAKGAMALFGEKYDDQVRVLTM-----GDFSIELCGGIHARRTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES AGIRRIEA+TG+ A + L Q + L+ + +K N++ +V + E R L Sbjct: 685 ESGTAAGIRRIEAVTGEGAVASLHHQSDLLQDVTLLVKGDANNLIEKVRSLLERNRGLEK 744 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIML 827 +L+ K + K D+N + ++ S V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELLQLKEQQAAQESSSLAGKAKDINGVKLLVTQLSNVEPKMLRTMVDDLKNQLGSAVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 I E K S++ VT+ L +R A +L A + GG GGGRP +AQ+GG + + Sbjct: 805 STIV-EGKVSLIAGVTQGLTERVKAGELVGFVANQV-GGKGGGRPDLAQAGGSDADALPS 862 Query: 888 AIAGVASFL 896 A+A V +++ Sbjct: 863 ALASVEAWV 871 >gi|27262306|gb|AAN87434.1| Alanyl-tRNA synthetase [Heliobacillus mobilis] Length = 883 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/906 (43%), Positives = 563/906 (62%), Gaps = 45/906 (4%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FLE+F++ GH ++ SSSL+P NDPTL+FTN+GM FK++F G EK Y TT Sbjct: 6 NRVRQLFLEYFEQKGHTVVASSSLVPHNDPTLLFTNAGMNQFKDLFLGYEKRPYVRATTS 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L + + Sbjct: 66 QKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRFAWEFLTDVVKLPKDK 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY T+Y +DEEA +LWKK G+ ++IIR+ DNFWSM +TGPCGPCSEI D+GE + Sbjct: 126 LYATIYLDDEEAHELWKKEIGVPEERIIRLGEKDNFWSMGDTGPCGPCSEILIDRGEHLR 185 Query: 185 GGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + + +R++EIWNLVFMQF + + LPK SIDTGMGLER+ +VLQ+ Sbjct: 186 CGAEECAIGKCDCDRWLEIWNLVFMQFNRDEQGVMTPLPKPSIDTGMGLERITSVLQDVP 245 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYD DL + LI EQ++G +Y ++ RVI DH+RS +FLI DG+LP NEGRGYV Sbjct: 246 SNYDTDLLRPLITYVEQLSGKEYHRDDRGFPFRVIADHIRSCTFLITDGVLPGNEGRGYV 305 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + +++G +P M ++P + MG AYPE+ + + +++ ++ E+ERF + Sbjct: 306 LRRILRRAVRFGKVIGIEKPFMYQIVPVVVELMGEAYPEIKEKQDFVQKVIKIEEERFHE 365 Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL G+ + +++ + +D +L G AF LYDT+G PLD+ +DI GL +D F Sbjct: 366 TLHEGMRIAADIVAKVKEDGGGVLPGRQAFTLYDTYGFPLDLAEDIAEENGLT-VDKDGF 424 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 A+E QR RARA G +IW L K G T F GY L G Sbjct: 425 AAAMEAQRERARAARQDTSYGAGMEIWADLLNKLGPTAFTGYGQLSG------------- 471 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S + AIV E V EA G V+VV +TPFYAE+GGQ+GDTG D Sbjct: 472 ----------QSQLLAIVSGPEQVAEASVGTAVQVVLAETPFYAESGGQIGDTGYIRTDK 521 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++I D +K A G+FVH +VE G + ++ + R+ ++ +HSATHLLH AL Sbjct: 522 AIIRIDDTKKMAGGLFVHVGVVEEGTFQAGETVTAEVTGLRRQAIARHHSATHLLHRALK 581 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS +T D LRFD +H P+T E K IE++VN + ++LPV ++ Sbjct: 582 DVLGEHVNQAGSLVTGDRLRFDFSHFTPLTREEWKQIEESVNRQVFRSLPVEVFEATLDE 641 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GA AL G KY D VRVV + G +S LCGGTH+ +T +I L +VSE I A Sbjct: 642 AKAMGATALFGEKYGDHVRVVRM-----GDYSMELCGGTHLQNTAQIGLFKLVSEGGIGA 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLIH 774 G+RR+EA+TG+ A +L Q+E ++ LA LKV +V RVE ++ E+ R+++ + Sbjct: 697 GLRRLEAVTGEAALDYLNEQEEIVRGLAEKLKVPPVDVAHRVETLQSQVREKEREIEQLL 756 Query: 775 AKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A R + VEDL ++ I+ V ++ + D L+ + D L++K+ SG+++L + Sbjct: 757 A-RLAKYQVEDLLANREEISGVQVLAAKVQAPDMDALRQMSDLLKEKMGSGVLILGSVVG 815 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K +++ T+D++ R +A +L + +AK GGGGGGRP MAQ+GG + +K +A+ Sbjct: 816 D-KVNLVASATKDIVGRGVHAGNLIKEAAKTC-GGGGGGRPDMAQAGGKDPSKLAEALDA 873 Query: 892 VASFLK 897 LK Sbjct: 874 AKKLLK 879 >gi|207728244|ref|YP_002256638.1| alanyl-trna synthetase (alanine--trna ligase) (alars) protein [Ralstonia solanacearum MolK2] gi|206591490|emb|CAQ57102.1| alanyl-trna synthetase (alanine--trna ligase) (alars) protein [Ralstonia solanacearum MolK2] Length = 893 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/916 (42%), Positives = 544/916 (59%), Gaps = 61/916 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y + Sbjct: 16 ASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAAS 75 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 76 VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAD 135 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSEIF Sbjct: 136 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 195 Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230 +D G I GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGMG+ Sbjct: 196 YDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGM 255 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI DG+ Sbjct: 256 ERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGV 313 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI+RRA+ + LG L+ L T+MG AYPEL +A+ + + Sbjct: 314 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVVDV 373 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 LR+E+ RF +T++ G+ +LDG L L ++L+G++AFKL+DT G PLD+ QD+ C Sbjct: 374 LRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDV-CRE 432 Query: 409 GLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +D +F+ A+ QR +ARA L +GT L T F GYD L Sbjct: 433 NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT-------LDYTGDKTTFHGYDQL---- 481 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 ++E ++ V A+ G V+ GQ VV D TPFYAE+GGQ Sbjct: 482 -VRE-----------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGGQ 523 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G + + D K +F HH + G+L+ ++ +D R + NH Sbjct: 524 VGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRNH 583 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+H AL +LG HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 584 SATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFANA 643 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 +IM +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I L Sbjct: 644 QTAAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIGT------SKELCGGTHVARTGDIGL 697 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 698 FKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQV 757 Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +L K KL + D + DV ++ + D+K L+ MD L+ K+++ Sbjct: 758 KTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLKT 817 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I+L +S E K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 818 AAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEP 875 Query: 883 NKADQAIAGVASFLKK 898 +K QA+AGV +++++ Sbjct: 876 DKLPQALAGVTAWVQQ 891 >gi|66768815|ref|YP_243577.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. 8004] gi|81305217|sp|Q4UTR6|SYA_XANC8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|66574147|gb|AAY49557.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. campestris str. 8004] Length = 882 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/909 (43%), Positives = 547/909 (60%), Gaps = 50/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF+LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFELWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+ID+F+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDVFQALIGKASALTGIADLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG + ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQLFFSKMVPTLVELMGEAYPELVVAQETVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S EI+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDDVASR--SQEIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GY+ +D Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVATMAPTVFLGYE--------AQDAD 471 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 L V A+++QG V+ A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 472 ALK--------------VVALLKQGRPVDRAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + +++ D QK A H + G L+ L ID Q R + +NHSATHLLH Sbjct: 518 SGTDVSIEVADTQKFAGQFHGHVGRIAEGALKLGDVLSGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITAEELAVIERKVNAEVRTNHSVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY +RVRV+ + G +S+ LCGGTHVS TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGERVRVLKM-----GGYSTELCGGTHVSRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + +G+RRIEA+TGQ A ++ ++ +L A+ L + +V +V + + ++L +L Sbjct: 693 GVSSGVRRIEAVTGQGALDYVAEEERRLGEAANLLGGNSTEIVDKVRALTDRQKRLEREL 752 Query: 773 IHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL S +A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGASAVDVAGVKVIAVRLEGFDAKALREAMDRLKQQLGDSVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K A V V L +++++ GG GGGRP +AQ GG +G A+ Sbjct: 813 AAGGKVALVAGVNGGPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPALATAL 870 Query: 890 AGVASFLKK 898 GV S++K+ Sbjct: 871 QGVPSWVKQ 879 >gi|166712451|ref|ZP_02243658.1| alanyl-tRNA synthetase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 882 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/916 (43%), Positives = 543/916 (59%), Gaps = 64/916 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPT 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS+ E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSTDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ AK + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAKDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GY+ Sbjct: 423 MEGFECAMERQRETARAAG-KFGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 475 -----------------VVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGRL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ +++ D QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 NGPGVLIEVADTQKFAGQFHGHVGRISEGTLALGDVLAGGIDVQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALRDVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRTNHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + +G+RRIEA+TGQ A ++ ++ +L A L + VV +V + E ++L +L Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAAHLLGGNATEVVDKVRALTERQKRLEREL 752 Query: 773 IHAKRKLQLNV-EDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL DL I A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 753 ESLKAKLASGATADLGAAAIDVAGVKVVAVRLEGFDAKALRDAMDRLKQQLGDCVIVLAG 812 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSA-KVLG------GGGGGGRPHMAQSGGPNG 882 S K A L+ N ++ A ++LG GG GGGRP +AQ GG +G Sbjct: 813 ASGGKVA---------LVSGVNGSPTGKVKAGELLGHIASQIGGKGGGRPDLAQGGGEDG 863 Query: 883 NKADQAIAGVASFLKK 898 A+ GV ++K+ Sbjct: 864 PALATALDGVPLWVKQ 879 >gi|118340595|gb|ABK80645.1| putative alanyl-tRNA synthetase class IIc [uncultured marine Nitrospinaceae bacterium] Length = 878 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/903 (41%), Positives = 546/903 (60%), Gaps = 44/903 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FL++F+ GH ++ S +L+P NDPTLMFTN+GMV FK++F G+EK Y +VQK Sbjct: 6 LRKKFLQYFEDRGHTVVSSYALVPKNDPTLMFTNAGMVQFKDVFLGEEKRDYNRAVSVQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+ VGRT+RHHTFFEMLGNFSFG YFK+ AIQ W+ LT L + RLY Sbjct: 66 CVRAGGKHNDLEMVGRTSRHHTFFEMLGNFSFGDYFKKEAIQFGWEFLTDVIGLPRDRLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 I+V+++D++AF +W + ++I ++ DNFW+M TGPCGPCSEIF DQG+ I G Sbjct: 126 ISVFEDDDDAFNIWVDDIKMPRERIYKLGEKDNFWAMGSTGPCGPCSEIFIDQGKAIGCG 185 Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P S E G +R++EIWNLVFMQ+++ + LP IDTGMGLER+A V+Q +T N Sbjct: 186 QP-SCEVGCDCDRFLEIWNLVFMQYDRDKAGKLTPLPHPCIDTGMGLERLAAVVQGRTTN 244 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301 YD DL +I + ++TG +Y N V+ RV+ DH R+S FLI+DG++P+NEGRGYVL Sbjct: 245 YDTDLMMSIITVAARITGKEYGKQNEVDVSLRVLTDHARASVFLISDGVIPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RRA+ + +LL P + + + AYPEL I++ + +E+E F T Sbjct: 305 RKIIRRALRHGKLLEQKGPFFHRITSKVIEDFKGAYPELSGNSEFIQKVVINEEESFSNT 364 Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L G L+ ++ + KD++ + G+ FKLYDT+G P D++++ GL +D+ + Sbjct: 365 LHYGTQRLEEIIEKVSKDKLCTIPGEEIFKLYDTYGFPTDLVEETAKDAGLT-LDMEGYT 423 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+ EQR++A G G + + T F GY +G K+L Sbjct: 424 RAMNEQRTKATNSWKGSGEKEVPPFYREFLQSSAPTVFEGYGTTQGQG------KIL--- 474 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 AI++ VE A +G ++E + D+TPFY E+GGQ GD+G A + + Sbjct: 475 --------------AILKDHAPVESASTGDEIEFLTDKTPFYGESGGQTGDSGRASNENV 520 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +L + D K G+ VH A + G +R +L L + Q R ++NHSATHLL AL Sbjct: 521 QLSLDDATKPLPGLIVHKAKIISGTMRNGETLKLEVHPQVRGNTALNHSATHLLQAALKE 580 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H+ Q GS + D LRFD TH P+T E IE VN+ I N+ V T+ M+ + A Sbjct: 581 VLGEHIKQAGSLVASDRLRFDYTHFSPLTDKERVRIESRVNEKIRDNIQVATQEMDIDTA 640 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 I GA AL G KY D VRVV V S LCGGTHV++TG+I L I SE SI +G Sbjct: 641 IKEGAVALFGEKYGDTVRVVDVLG-----FSKELCGGTHVNATGDIGLFRITSEGSIASG 695 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRK 778 +RRIEA+TG +A +++ + E L ++ LK + +++++ E+ R+L+ I ++ Sbjct: 696 VRRIEAVTGAKAYNNIQAEQESLAAIRVLLKAPSNEEITKLKKLLEKNRQLEKEITTLKE 755 Query: 779 LQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +N ++ S KI DV+ + I +D+K L++ +D + +++SGI+ +VG + Sbjct: 756 KMVNGQESSGLDEVQKIGDVSVLIKKIEGMDAKTLRTFIDNTKNQLKSGIV-VVGSVADG 814 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K S+ + VT+DL +++A ++ + S V+ GG GGGRP MAQ+GGP K DQA+ Sbjct: 815 KVSMAVGVTKDLTGKYHAGNIIK-SIAVIVGGSGGGRPDMAQAGGPEIEKLDQALKKAEE 873 Query: 895 FLK 897 ++ Sbjct: 874 LIR 876 >gi|299770946|ref|YP_003732972.1| alanyl-tRNA synthetase [Acinetobacter sp. DR1] gi|298701034|gb|ADI91599.1| alanyl-tRNA synthetase [Acinetobacter sp. DR1] Length = 883 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/914 (44%), Positives = 538/914 (58%), Gaps = 60/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 9 AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 68 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT + L + Sbjct: 69 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSDEWLALPK 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 129 DRLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 188 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GGLPG+ EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 189 FFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 248 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HL++A+ + G++ EG + RV+ DH RS FLIADG+ P+N Sbjct: 249 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL--RVVADHARSCCFLIADGVNPSN 306 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL E Sbjct: 307 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGEAYPELAARKDVIEATLVRE 366 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L KD+ + G FKLYDT+G P D+ DI R ID Sbjct: 367 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDFI-ID 424 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + S+ + G TQF GY Sbjct: 425 EAGFEVEMAAQRQRAR------DAGKFAIDYNSIVQVEGETQFDGY-------------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 I+ T G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 465 -------IN-TTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D KK+ G FVH IV G L+ + ++ + R + NHSATHLLH Sbjct: 516 KNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKADQNVEAIVKADIREATARNHSATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILGSHV Q GS + D LRFD + +P+T +L+ +E VN I N V T ++ Sbjct: 575 AALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANTAVTTELL 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY + VRV+++ D S LCGG HV TG+I L I SE Sbjct: 635 DIEAAKAKGAMMLFGEKYGNEVRVLAMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEA+TG +A + D ++ + LK + V RV+ E LQ Sbjct: 695 GGVAAGVRRIEAVTGTKALEVVQKTDADIQHINGLLKAQKDQTVERVQANVELVSALQ-- 752 Query: 774 HAKRKLQLN--VEDLSCHKIAD-VNFMS------HIISEVDSKELKSVMDALQKKIQSGI 824 K+ QLN + + ++ D V +S + VD+K L+++ D+++ K+++ + Sbjct: 753 --KQIEQLNQKLANFQASELIDQVQTISGRQTLITTVQGVDAKSLRNLHDSVKSKLENAV 810 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 811 IVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 868 Query: 885 ADQAIAGVASFLKK 898 Q IA + ++L++ Sbjct: 869 FGQVIAALPAWLEQ 882 >gi|145589899|ref|YP_001156496.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|205830176|sp|A4SZL8|SYA_POLSQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145048305|gb|ABP34932.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 874 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/911 (43%), Positives = 548/911 (60%), Gaps = 60/911 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ IR +L+FF + GH+++PSS ++P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 VTQIRQAYLDFFAQKGHQIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRSYTRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AIQ AWDLLT+ F+L + Sbjct: 63 AQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIQFAWDLLTQVFELPKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L +TVY ED+EA+ +WK G+ A++IIRI N DNFW M +TGPCGPC+EIF Sbjct: 123 KLLVTVYAEDDEAYAIWKDQIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D GE IPGG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMGLER+A Sbjct: 183 YDHGEHIPGGPPGSPDEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQAS-EQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILP 292 VLQ +NY+IDLF +LI+A+ + V G E + + +VI DH+R+ SF++ DG++P Sbjct: 243 VLQHVHSNYEIDLFVNLIKAAKDTVDGAGGENCDAQSPSLKVIADHIRACSFIVVDGVIP 302 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 N GRGYVLRRI RRA+ + LG +P L+PAL EMG AYPEL A+ + E L+ Sbjct: 303 GNAGRGYVLRRIARRAIRHGYKLGARKPFFYQLVPALVKEMGDAYPELRAAQDKVSEVLK 362 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERF +T+ G+ +LDG L+ G ++++G+ AF+L+DT G PLD+ D+ RG+ Sbjct: 363 QEEERFFQTIANGMEILDGALA--GGAKVVDGETAFRLHDTFGFPLDLTADVCRERGVT- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR--GSKFMK 470 +D F A+++QR +ARA K+ L K T+F GY+ L+ G+K Sbjct: 420 VDSEGFEVAMQKQRDQARA-------AGKFKVAQGLDYKGVPTRFHGYETLKHEGAK--- 469 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + A+ G V +G VV D TPFYAE+GGQ+GD Sbjct: 470 ---------------------ITALYLDGSAVNSVKAGDAAVVVLDNTPFYAESGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + R + D K +F H V G L+ +L +D R NHSAT Sbjct: 509 KGELRNEAARFTVDDTFKIQADVFGHQGEVLEGELKVGDTLNALVDIALRNDTMRNHSAT 568 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H+LH AL +LG HV Q GS + RFD TH+ PIT+ +++ IED VN I N Sbjct: 569 HILHKALREVLGDHVQQKGSLVDASKTRFDFTHNAPITAEQIRRIEDIVNAEILDNSATS 628 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 ++M+ EDA +GA L G KY D VRV+ + S LCGGTHVS TG+I L I Sbjct: 629 GKVMSLEDAQKTGAMMLFGEKYGDEVRVLEIG------SSKELCGGTHVSRTGDIGSLKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768 VSE + AGIRR+EA+TGQ A L G ++K+ A+ LK G++V RV ++ E R Sbjct: 683 VSEGGVAAGIRRVEAVTGQNALHFLQGLEDKINEAATILKTHPGDLVNRVAQLQESLRLA 742 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGII 825 + +L KL + D + DVN + + + +D + L+ MDAL+ K+++ I Sbjct: 743 ERELEKVNSKLAASQGDELAGQAIDVNGLKVLAARLDGADAGVLRETMDALKAKLKTAAI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S++ VT D + + A DL A+ + GG GGG+P MA +GG + +K Sbjct: 803 VLASVQGD-KVSLIAGVTADSIAKVKAGDLVNFVAQQV-GGKGGGKPEMAMAGGNDPSKL 860 Query: 886 DQAIAGVASFL 896 A+ GV ++ Sbjct: 861 GAALDGVKDWV 871 >gi|293608692|ref|ZP_06690995.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829265|gb|EFF87627.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 878 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/914 (44%), Positives = 535/914 (58%), Gaps = 60/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK A++ AW+ LT E L + Sbjct: 64 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY TVY D+EA+ +W K GL+ ++IIRI N DNFW+M +TGPCGPCSEI Sbjct: 124 DKLYATVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GGLPG+ EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NYDIDLF+HL++A+ + G++ +G + RV+ DH RS FLIADG+ P+N Sbjct: 244 AVLQHVNSNYDIDLFQHLLKAAANIIGIEDQGQPSL--RVVADHARSCCFLIADGVNPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG T +L L MG AYPEL K +IE TL E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGDAYPELAARKDVIEATLIRE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL LL+G L+ L KD+ + G FKLYDT+G P D+ DI R ID Sbjct: 362 EEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYDTYGFPTDLTADIARERDFI-ID 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + QR RAR +G + ++ + G TQF GY Sbjct: 420 EAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVEGETQFDGY-------------- 459 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 I+ T G IV AI + G V+E G + +V +QTPFYAE+GGQ+GDTG Sbjct: 460 -------IN-TTGQGQIV-AIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIF 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ D KK+ G FVH IV G L+ + ++ + R + NHSATHLLH Sbjct: 511 KNETGIFEVQDT-KKSGGAFVHQGIVTVGSLKADQNVEAIVKADIREATARNHSATHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILGSHV Q GS + D LRFD + +P+T +L+ +E VN I N V T ++ Sbjct: 570 AALRQILGSHVQQKGSLVASDILRFDFANDQPVTFEQLQQVERLVNAEIIANSAVTTELL 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA L G KY D VRV+S+ D S LCGG HV TG+I L I SE Sbjct: 630 DIEAAKAKGAMMLFGEKYGDEVRVLSMGSIIDEKNFSIELCGGIHVKRTGDIGLFKITSE 689 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEA+TG +A + D ++ + LK + V RV+ E LQ Sbjct: 690 GGVAAGVRRIEAVTGTKALDVVQKTDADIQHINGLLKAQKDQTVERVQANVELVSALQ-- 747 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K+ QLN +L IA + + VD+K L+++ D+++ K+++ I Sbjct: 748 --KQIEQLNQKLANFQASELIDQVQTIAGRQTLITTVQGVDAKSLRNLHDSVKSKLENAI 805 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G+ + K S+L V A D+ + A L GG GGG+P +AQ G P K Sbjct: 806 IVLAGVEGD-KVSLLASVASQYTATLKAGDIIKHLATEL-GGKGGGKPDLAQGGAPLNEK 863 Query: 885 ADQAIAGVASFLKK 898 Q IA + ++L++ Sbjct: 864 FGQVIAALPAWLEQ 877 >gi|91774923|ref|YP_544679.1| alanyl-tRNA synthetase [Methylobacillus flagellatus KT] gi|122400203|sp|Q1H3U9|SYA_METFK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91708910|gb|ABE48838.1| alanyl-tRNA synthetase [Methylobacillus flagellatus KT] Length = 874 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/909 (42%), Positives = 546/909 (60%), Gaps = 56/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL++F GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y T+ Sbjct: 4 NQIRQAFLDYFASKGHQIVSSSSLVPAGDPTLLFTNAGMNQFKDVFLGFDKRPYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWELLTQVFKLPADK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +TVY ED+EA+ +W + G+ A+++IRI N DNFW M +TGPCGPC+EIF+ Sbjct: 124 LTVTVYAEDDEAYDIWTREIGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D GE IPGG PGS E+G+R+IEIWN VFMQF + + LPK S+DTGMGLER+A V Sbjct: 184 DHGEHIPGGPPGSPDEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERIAAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF++LI+A+ +VT + + +V+ DH+R+ SFLIADG++P NEG Sbjct: 244 LQGVHSNYEIDLFQNLIKAAARVTNTTDLDSPSL--KVLADHIRACSFLIADGVIPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG + ++ AL EMG AYPEL + I LR E++ Sbjct: 302 RGYVLRRIIRRAIRHGYKLGARQAFFHLMVSALVNEMGDAYPELKSGEERITSILRQEED 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +T++ G+ +L+ L + K + + NG+ AFKL+DT G PLD+ D+ RG++ +D Sbjct: 362 RFFETIEHGMAILEAELEEMAKTGNHVFNGETAFKLHDTFGFPLDLTADVCRERGVS-VD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F+ A+ Q+ +ARA K+ +L+ AT F GYD L K Sbjct: 421 SAAFDAAMARQKEQARA-------AGKFKMAANLEYTGNATTFHGYDTLEAQG------K 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 VL A+ + G V G+ VV D TPFYAE+GGQ+GD G Sbjct: 468 VL-----------------ALYKDGSAVPALNEGELGVVVLDNTPFYAESGGQVGDQGIL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G Q+ D QK +F HH ++ G LR + +D +R + +HSATHL+H Sbjct: 511 KGAEGIFQVEDTQKIQASVFGHHGVLSTGTLRVGDEVSARVDLLSRHRTMRHHSATHLMH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + PD RFD +H+ P+T+ E++ IED VN I N P + R+M Sbjct: 571 KALRAVLGSHVQQKGSLVDPDKTRFDFSHNAPVTADEIRRIEDIVNAEILANTPTLARVM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A +GA L G KY D VRV+ + S LCGGTHVS TG+I L IVSES Sbjct: 631 PIDEAQKTGAMMLFGEKYGDEVRVLDIGT------SRELCGGTHVSRTGDIGLFKIVSES 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA G A H+ Q + L A+ KV + G++ + E+ + L+ Sbjct: 685 GVAAGVRRIEAAAGDVALRHIQQQQQLLADAAASFKVPAIELAGKISQTLEQIKALEKEL 744 Query: 775 AKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ K +L ++L+ I + ++ + D+ L+ MD L+ K+++ I+L Sbjct: 745 ARLKSKLASSQGDELASQAVNIGGIKVLAATLEGADANTLRETMDKLKDKLKTAAIVLAS 804 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K SV VT D R A +L A + GG GGG+P MA +GG + ++ +A+ Sbjct: 805 VNGD-KVSVAAGVTTDTTARIKAGELVNFVAAQV-GGKGGGKPDMAMAGGSDPSQLPRAL 862 Query: 890 AGVASFLKK 898 A VA ++++ Sbjct: 863 ASVAGWVEE 871 >gi|84390150|ref|ZP_00991412.1| alanyl-tRNA synthetase [Vibrio splendidus 12B01] gi|84376804|gb|EAP93679.1| alanyl-tRNA synthetase [Vibrio splendidus 12B01] Length = 860 Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/911 (42%), Positives = 543/911 (59%), Gaps = 71/911 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ H+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ ADKI+RI +DNFW+M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK ++DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G N + RVI DH+RS SFLIADG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEVVGHDDLSNQSL--RVIADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + +G L+ L MGSA EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 362 EEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F +A+E QR RAR A G T K+ + T+F GY G Sbjct: 420 DEEGFEKAMEAQRKRAREAGQFGTDYNATLKVDTN-------TEFCGYTATEG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + A+ GE V +G K ++ ++TPFYAE+GGQ GD G Sbjct: 466 ----------------AGEISALFVDGEEVPSLSAGDKAIIILEETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK F HH + G+ + +D + R +S+NHSATHL Sbjct: 510 TLKTASGLFKVQDTQKLGNA-FAHHGELVEGVFAQGDKVEAIVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD ++ + +T A++K +E VN + +N + T Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 E I AGIRRIEA+TG+ A + Q +EKL A K + ++ + Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEEKLAESAKKAKSLEKDI---------QLL 734 Query: 769 KLQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K ++ A+ + VED+S K+ + I D+K L++++D + ++ SGII++ Sbjct: 735 KEKMAAAESANIMGKVEDISGTKV-----LVAAIEGADNKNLRTMVDNAKNQVGSGIILI 789 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 I+ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + + Sbjct: 790 ANIA-DGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDVEALPE 847 Query: 888 AIAGVASFLKK 898 A+ V ++L++ Sbjct: 848 ALKSVRTWLEE 858 >gi|83747684|ref|ZP_00944719.1| Alanyl-tRNA synthetase [Ralstonia solanacearum UW551] gi|83725594|gb|EAP72737.1| Alanyl-tRNA synthetase [Ralstonia solanacearum UW551] Length = 880 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/916 (42%), Positives = 544/916 (59%), Gaps = 61/916 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y + Sbjct: 3 ASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGSDKRPYVRAAS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 63 VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSEIF Sbjct: 123 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 182 Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230 +D G I GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGMG+ Sbjct: 183 YDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGM 242 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI DG+ Sbjct: 243 ERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI+RRA+ + LG L+ L T+MG AYPEL +A+ + + Sbjct: 301 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVVDV 360 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 LR+E+ RF +T++ G+ +LDG L L ++L+G++AFKL+DT G PLD+ QD+ C Sbjct: 361 LRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDV-CRE 419 Query: 409 GLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +D +F+ A+ QR +ARA L +GT L T F GYD L Sbjct: 420 NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT-------LDYTGDKTTFHGYDQL---- 468 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 ++E ++ V A+ G V+ GQ VV D TPFYAE+GGQ Sbjct: 469 -VRE-----------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGGQ 510 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G + + D K +F HH + G+L+ ++ +D R + NH Sbjct: 511 VGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRNH 570 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+H AL +LG HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 571 SATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFANA 630 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 +IM +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I L Sbjct: 631 ATHAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIGT------SKELCGGTHVARTGDIGL 684 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 685 FKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQV 744 Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +L K KL + D + DV ++ + D+K L+ MD L+ K+++ Sbjct: 745 KTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLKT 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I+L +S E K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 805 AAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEP 862 Query: 883 NKADQAIAGVASFLKK 898 +K QA+AGV +++++ Sbjct: 863 DKLPQALAGVTAWVQQ 878 >gi|152997630|ref|YP_001342465.1| alanyl-tRNA synthetase [Marinomonas sp. MWYL1] gi|205830138|sp|A6W1F1|SYA_MARMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|150838554|gb|ABR72530.1| alanyl-tRNA synthetase [Marinomonas sp. MWYL1] Length = 872 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/896 (43%), Positives = 545/896 (60%), Gaps = 65/896 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +FL +F+ H+++ SSSL+P NDPTL+FTN+GMV FK++F G++ Y TT Sbjct: 4 SELRQSFLSYFESKQHQIVESSSLVPGNDPTLLFTNAGMVQFKDVFLGEDIRPYSRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT L + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAIHYAWEFLTVVLKLPTEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +TVY +D+EAF +W K GL +KIIRI N DNFW+M +TGPCGPC+E+F+ Sbjct: 124 LLVTVYADDDEAFDIWNKDIGLPVEKIIRIGDNKGGRYQSDNFWAMGDTGPCGPCTEVFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D GE I GG PGS EE G+R+IEIWN+VFMQF + LPK S+DTGMGLER+A + Sbjct: 184 DHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRSADGTMASLPKPSVDTGMGLERIAAI 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF++LI+A+ QV G + + RVI DH+RS SF+I DG++P+NEG Sbjct: 244 LQGVHSNYEIDLFQNLIKAAAQVVGTQDLSAQSL--RVIADHIRSCSFMIVDGVIPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG L+ AL EMG AYPEL + K + L E+E Sbjct: 302 RGYVLRRIIRRAIRHGNKLGQKGVFFHKLVEALDVEMGEAYPELTKLKERVAAILLKEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +F KTLD+G+ +L+ +S LG +++ G+ FKLYDT+G P D+ D+ GL ID Sbjct: 362 QFAKTLDQGMKILEEAISGLGDQKVIPGETVFKLYDTYGFPADLTNDVARENGLE-IDEA 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-----YGATQFIGYDLLRGSKFMKE 471 F A++ QR+RAR+ S FS+ GAT+F GY L G Sbjct: 421 GFEVAMDAQRARARSASN-----------FSMDMSGSVSVDGATEFTGYSNLNG------ 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V+ I+ +GE V +GQ VV +TPFY E+GGQ+GD Sbjct: 464 -----------------QSAVEQIIVEGESVSSLQAGQTGLVVLAETPFYGESGGQVGDQ 506 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G ++T+ K+ + + +HH V G L + +D R ++NHSATH Sbjct: 507 GWLRGPAA-AKVTNTTKQGK-VHLHHVDVREGTLAVGDLVTTEVDRSLRNATALNHSATH 564 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV Q GS + P+ LRFD +H + +T+AE + +ED VN+ + N VVT Sbjct: 565 LLHEALRRVLGDHVQQKGSLVNPERLRFDFSHFEGMTAAEFEQVEDMVNEQVRLNHEVVT 624 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ + A A GA AL G KY +VRV+++ G +S LCGGTHVS TG+I L IV Sbjct: 625 EVMDIDSAKAKGAQALFGEKYESQVRVLTM----GADYSIELCGGTHVSRTGDIGLFKIV 680 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE I +G+RRIEA+TG+ A + L +A K S+ + +V + ++ R LQ Sbjct: 681 SEGGIASGVRRIEALTGKAAIDATRHTETALGKIAGLFKASKEAALDKVVALNDQARALQ 740 Query: 772 --LIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825 L K K+ L DL+ + D+N ++++V D K L+ ++D L+ K++S +I Sbjct: 741 KELDVLKGKMAALAGADLASQAV-DINGGKLLVAQVEVEDPKALRDLLDELKSKLESAVI 799 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +L ++ + K S++ VT++L A DL ++ A + G GGGRP MAQ+GG N Sbjct: 800 LLAAVN-DGKVSLIAGVTKELTKNVKAGDLIKMVAPYV-DGKGGGRPDMAQAGGNN 853 >gi|29654361|ref|NP_820053.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 493] gi|154706669|ref|YP_001424370.1| alanyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111] gi|41018200|sp|Q83CQ6|SYA_COXBU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830040|sp|A9KG28|SYA_COXBN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29541628|gb|AAO90567.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 493] gi|154355955|gb|ABS77417.1| alanyl-tRNA synthetase [Coxiella burnetii Dugway 5J108-111] Length = 865 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/904 (41%), Positives = 556/904 (61%), Gaps = 52/904 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R TFL +F++ HE++P SSLIP NDPTL+FTN+GMV FK++F G E YQ Sbjct: 2 NSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT L Sbjct: 62 SIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLPP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +RL++TV+ +D E+ +W K ++ ++ R DNFW M +TGPCGPC+EIF+D G Sbjct: 122 QRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGPT 181 Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PGS+E +G+RY+EIWNLVFMQ+ + K L K S+DTGMGLER+A V+Q Sbjct: 182 ISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGVH 241 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NYDIDLF++L++A T +K E + + RVIVDH+RS +FLIADG++P+NEGRGYVL Sbjct: 242 DNYDIDLFQYLLKALR--TLLKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYVL 299 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG EP L L EMG AYP L +++ LIE+T++ E+ +F T Sbjct: 300 RRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEIQFSNT 359 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L +GL +LD ++ L +I G++ F+LYDT+G P D+ DI R +D F++A Sbjct: 360 LTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDFV-MDYAGFDKA 417 Query: 422 LEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E QR ++ +AH I G TQF+GY+ L Sbjct: 418 MERQREQSQQAHQFVANYAQKASIG-------GETQFVGYETL----------------- 453 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N ++++ +++Q + + +K VV D+TPFYAE+GGQ+GD G + Sbjct: 454 -----NSQANVI-SLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D +K+ + I++H + +G L + + +D +R + NHSATHLLH AL + Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDV-SRFDIMRNHSATHLLHEALRRV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG V Q GS + LRFD +H+KP+T EL+++E VN I NL +M E+A Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G +Y VRV+ + G S+ +CGGTH TGEI L IVSES AGI Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A ++ +++L+SL+ LK ++ N+ ++ +I E++RKL+ AK K + Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740 Query: 781 LNVEDLSC--HKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + L +++ DV+ + + + VD + L++++D L++K+ I+L I +E + Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799 Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 ++ VT++ L+ FNA + LA ++ KV GG GGRP +AQ G + A+A V Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV--GGRSGGRPDLAQGAGERPENLEAALAAVPK 857 Query: 895 FLKK 898 +++K Sbjct: 858 WIEK 861 >gi|37525217|ref|NP_928561.1| alanyl-tRNA synthetase [Photorhabdus luminescens subsp. laumondii TTO1] gi|41018167|sp|Q7N7A5|SYA_PHOLL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|36784644|emb|CAE13544.1| alanyl-tRNA synthetase (alanine--tRNA ligase) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 876 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/894 (43%), Positives = 551/894 (61%), Gaps = 55/894 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F GQ+K Y T Sbjct: 4 STAEIRQAFLDFFHTKGHQVVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGQDKRSYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGKDWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+EA+ +WK G+ A++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYQTDDEAYDIWKNDVGIPAERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D GE I GG PGS EE G+RYIEIWN+VFMQF + LPK S+DTGMGLER Sbjct: 184 EIFYDHGEHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NY+IDLF+ LI VTG + +N + RVI DH+RS +FLI DG++P Sbjct: 244 ITAVLQHVNSNYEIDLFRDLITVVANVTGATDDLSN-KSLRVIADHIRSCAFLICDGVVP 302 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MG+A EL + + ++E+ L+ Sbjct: 303 SNENRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVAPLLEVMGAAGEELKRQQAVVEQILK 362 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D IL+G+ AF+LYDT+G P+D+ D+ R ++ Sbjct: 363 TEEEQFARTLERGLQLLDDELAKLSGD-ILDGETAFRLYDTYGFPVDLTADVCRERNIS- 420 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+E QR RAR S G G+ E I + E+ + F GYD Sbjct: 421 VDEAGFAVAMENQRRRARESS-GFGTDYNELI--KVDER---SDFSGYD----------- 463 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N + V AI + GE V + +G++ V+ D+T FYAE+GGQ+GD+G Sbjct: 464 ------------HNEQQATVTAIFRDGESVNQIQAGEEAIVILDKTAFYAESGGQVGDSG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D QK + I H +E+G L ++ ID + R + +NHSATHL Sbjct: 512 ILSNTNCAFCVIDTQKYGQAIG-HIGKLEKGTLSVNHNINAVIDIERRDAIRLNHSATHL 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL ILG HVSQ GS + LRFD +H + + +++ +ED VN + QN PVVT Sbjct: 571 LHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNAEVRQNSPVVTE 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY ++VRV+S+ G S+ LCGGTH + TG+I L I++ Sbjct: 631 LMDLETAKVKGAMALFGEKYEEQVRVLSM-----GDFSTELCGGTHANRTGDIGLFRIIA 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEAITG++A + Q + L+ +A +K ++ +V + + L+ Sbjct: 686 ESGTAAGIRRIEAITGKKAVESVHQQVDLLQDIAQLVKSDIHSLSEKVRMTLDRAKALEK 745 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ S ++ V + +S + K L++++D L+ ++ S II+L Sbjct: 746 ELQQLKDQQAAQESSSLASKAKEVKGVKLLVSQLSNTEPKMLRTMVDDLKNQLGSAIIVL 805 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 IS + K S+++ VT+DL + A +L A+ + GG GGGR MAQ+GG + Sbjct: 806 STIS-DDKVSLIVGVTKDLTAKIRAGELISSVAQQI-GGKGGGRSDMAQAGGSD 857 >gi|309780932|ref|ZP_07675671.1| alanine--tRNA ligase [Ralstonia sp. 5_7_47FAA] gi|308920235|gb|EFP65893.1| alanine--tRNA ligase [Ralstonia sp. 5_7_47FAA] Length = 880 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/915 (42%), Positives = 545/915 (59%), Gaps = 61/915 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y +V Sbjct: 4 SDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAASV 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L R Sbjct: 64 QRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSEIF+ Sbjct: 124 LWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGLE 231 D G + GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGMG+E Sbjct: 184 DHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGME 243 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI DG++ Sbjct: 244 RLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGVI 301 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL +A+ + E L Sbjct: 302 PGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVVEVL 361 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 R+E+ RF +T++ G+ +LD L L ++L+G++AFKL+DT+G PLD+ QD+ C Sbjct: 362 RTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDV-CREN 420 Query: 410 LAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 +D +F+ A+ QR +ARA + +GT L T F GY+ L Sbjct: 421 DVIVDEAAFDAAMTRQREQARAAGKFKMAAGT-------LDYTGDKTTFHGYEQL----- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 ++E ++ V A+ G V+E GQ VV D TPFYAE+GGQ+ Sbjct: 469 VRE-----------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGGQV 511 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + + D K +F HH + G+L+ ++ +D R + NHS Sbjct: 512 GDQGTLKAATVWFDVVDTLKVRPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRNHS 571 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LGSHV Q GS + + RFD +H+ P+T +++ +E VN I N Sbjct: 572 ATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFANAA 631 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 ++M +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I L Sbjct: 632 TSAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIG------SSKELCGGTHVARTGDIGLF 685 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ + Sbjct: 686 KIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAVLRAQPSELTSRIVQVQDQVK 745 Query: 769 KL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +L K KL + D + DV ++ + D+K L+ MD L+ K+Q+ Sbjct: 746 TLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQTA 805 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I+L G + K +++ VT D + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 806 AIVL-GSVTDGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPD 863 Query: 884 KADQAIAGVASFLKK 898 QA+AGVA+++++ Sbjct: 864 NLPQALAGVAAWVQQ 878 >gi|325927198|ref|ZP_08188459.1| alanyl-tRNA synthetase [Xanthomonas perforans 91-118] gi|325542426|gb|EGD13907.1| alanyl-tRNA synthetase [Xanthomonas perforans 91-118] Length = 882 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/914 (43%), Positives = 540/914 (59%), Gaps = 60/914 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 475 -----------------VVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ + +TD QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGPGVSINVTDTQKFAGQFHGHVGRISEGALALGDVLAGGIDTQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PIT+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPITADELAVIERKVNAEVRANHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A+ L + VV +V + E ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTSEVVDKVRALTERQKRLE--- 749 Query: 775 AKRKLQLNVEDLSCHKIADVNFMS----------HIISEVDSKELKSVMDALQKKIQSGI 824 R+L+ L+ AD+ + + D+K L+ MD L++++ + Sbjct: 750 --RELESLKAKLASGATADLGASAIDVVGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSV 807 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G S K A V V L +++++ GG GGGRP +AQ GG +G Sbjct: 808 IVLAGASGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPA 865 Query: 885 ADQAIAGVASFLKK 898 A+ GV ++K+ Sbjct: 866 LATALDGVPLWVKQ 879 >gi|320539040|ref|ZP_08038714.1| alanyl-tRNA synthetase [Serratia symbiotica str. Tucson] gi|320030880|gb|EFW12885.1| alanyl-tRNA synthetase [Serratia symbiotica str. Tucson] Length = 875 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/909 (42%), Positives = 562/909 (61%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHEAISYAWELLTGEDWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++T+Y+ D+EAF +W+K G+ A++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTIYETDDEAFDIWQKHIGVPAERIIRIGYNKGAAFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGAMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ NY+IDLF+ LI +VTG N + RVI DH+R+ +FL++DG+ P Sbjct: 244 IAAVLQHVNANYEIDLFRTLISVVAKVTGATDLDNKSL--RVIADHIRACAFLVSDGVSP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNESRGYVLRRIIRRAIRHGNMLGAKDTFFYKLVVPLIEVMGSAADELKRQQSRVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L + E L+G++AF+LYDT G P+D+ D+ RGL Sbjct: 362 TEEEQFARTLERGLALLDDELNKL-QGETLDGEIAFRLYDTFGFPVDLTADVCRERGLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G + I G+++F GYD E+ Sbjct: 420 VDEAGFQQAMEAQRRRARESS-GFCADYNTMIRVD-----GSSRFSGYDY--------EE 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ ++V A+ + G+ VE+ +G++ VV D TPFY E+GGQ+GD G Sbjct: 466 QQ---------------AMVIALFRDGQPVEQINAGEEAVVVLDGTPFYGESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++D QK + H + +G L+ + + ID + R ++ +NHSATHL Sbjct: 511 VLKAARADFVVSDTQKYGQATG-HLGKLSQGSLKVKDRVDAQIDTERRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL LG HV+Q GS + LRFD +H + + +++ +ED VN + +NL V T Sbjct: 570 LHAALRQTLGEHVAQKGSLVNDKYLRFDFSHYEAMKPEQIRRVEDLVNQQVRRNLLVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ +DA GA AL G KY+D VRV+++ G S+ LCGGTH S TG+I L IV+ Sbjct: 630 VMSLDDAKEKGAMALFGEKYDDNVRVLTM-----GDFSTELCGGTHTSRTGDIGLFSIVT 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---- 768 ES AG+RRIEA+TG+ A + L Q + L+ +A +K N+ ++ + R Sbjct: 685 ESGTAAGVRRIEAVTGEGAIAKLHQQSDLLQVVAHLVKGDSSNLADKLHATLDRTRLLEK 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +LQ + ++ Q + S K+ + V + + V++K L+ ++D L+ ++ S II+L Sbjct: 745 ELQQLKDQQAAQESASLSSQAKVVNGVKLLVSQLDNVEAKMLRIMVDDLKNQLGSAIIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT+DL DR A +L A+ + G GGGRP MAQ+GG + + Sbjct: 805 A-TTADDKVSLIAGVTKDLTDRVKAGELIGNVAQQV-AGKGGGRPDMAQAGGTDVSALPA 862 Query: 888 AIAGVASFL 896 A+ V +++ Sbjct: 863 ALNSVEAWV 871 >gi|261492574|ref|ZP_05989127.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311733|gb|EEY12883.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 875 Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/905 (42%), Positives = 547/905 (60%), Gaps = 55/905 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FLEFFQ GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ ++ IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + +K N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRRI+RRA+ + +LG E L+P L T MG A L Q + I++T Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGNILGTKEAFFYKLVPTLATVMGQAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLNLLEEALAKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID FN + QR RA+A S G+ I K T F GY Sbjct: 418 K-IDEDGFNAEMTAQRERAKASS-SFGTDYNNVIKVDSK-----TCFSGY---------- 460 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 T+ + V + G+ VE SG+ V+ D+TPFYAE GGQ+GD Sbjct: 461 ------------TETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + ++ D QK + +F H + G L + +D + R +++NHSAT Sbjct: 509 SGQISAEICNFEVVDTQKYGQ-VFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD++ + IT ++L+ +E VN + +N+ V+ Sbjct: 568 HLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENIQVI 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A A GA AL G KY + VRV VE D S LCGGTHV TG+I L I Sbjct: 628 IEEMDIESAKAKGAMALFGEKYGEVVRV--VEMSD---FSIELCGGTHVKQTGDIGLFKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE ++ AG+RRIEA+TG+ A + L + ++ A LK + V ++ ++ E+ ++ Sbjct: 683 TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAKRT 742 Query: 771 --QLIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 +L K KL DL+ +I VN + + V+ K L++++D L+ ++ S ++ Sbjct: 743 EKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLGSAVV 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + + E K ++++ VT+DL D+ NA L A+ + GG GGGRP MA +GG Sbjct: 803 VF-ATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKV-GGKGGGRPDMAMAGGSEPQHL 860 Query: 886 DQAIA 890 QA++ Sbjct: 861 LQALS 865 >gi|253702326|ref|YP_003023515.1| alanyl-tRNA synthetase [Geobacter sp. M21] gi|251777176|gb|ACT19757.1| alanyl-tRNA synthetase [Geobacter sp. M21] Length = 875 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/905 (43%), Positives = 549/905 (60%), Gaps = 59/905 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F FFQK GH L+ SS+LIP NDPTL+FTN+GM FK++F G EK Y + QK Sbjct: 6 IRAQFFNFFQKKGHALVESSNLIPRNDPTLLFTNAGMNQFKDVFLGMEKREYLRAVSSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L + RLY Sbjct: 66 CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTKELGLSKDRLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TVY +D+EA +W G+ ++I R DNFWSM +TGPCGPC+EIF+D G PG Sbjct: 126 VTVYTDDDEAADIWHNQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNG---PGT 182 Query: 187 LPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + + +RY+EIWN VFMQF + LPK S+DTGMGLER++ V+Q T Sbjct: 183 GCGSPDCAVGCDCDRYMEIWNNVFMQFNRGKDGVLAPLPKPSVDTGMGLERISAVMQGVT 242 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DL + +I+ E+V+G KY + + V+ RVI DH R+ +FLI DG+LP+NEGRGY Sbjct: 243 SNYDTDLLQGIIRHIEKVSGKKYRDDERDDVSMRVIADHARAVTFLICDGVLPSNEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRA +A++LG EP++ ++ A+ M AYPEL++ + +++ + +E+ERF Sbjct: 303 VLRRIMRRAARHAKMLGIAEPVLFRVVDAVNMMMSDAYPELLEREQYVKKVILAEEERFI 362 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TLDRGL +L+ + L +++++G++ FKLYDT G P+D+ DI+ + G +D Sbjct: 363 ETLDRGLAILNEETAALRAKGEKVISGEIIFKLYDTFGFPVDLTADIVESEGFT-LDEDG 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +E+QR +AR + G G I+ L T F+GY Sbjct: 422 FALCMEKQRVKARENWKGSGEQGLADIYKELHGTGITTDFLGYS---------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + AIV+ G +VEEA +G++VE+V TPFY E+GGQ GDTG Sbjct: 466 -------EQTAFSTISAIVKGGTLVEEAGAGEEVEIVTAATPFYGESGGQAGDTGTISTG 518 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +++T + + VH V G +RT + L I +R + NH+ATHLL AL Sbjct: 519 SGHVEVTGSTRPFTDLIVHRGRVVSGAVRTGEAADLKITVAHRAATARNHTATHLLQAAL 578 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS +TPD LRFD TH P+T E++ +E VN I N PV R M Sbjct: 579 REVLGEHVKQAGSLVTPDRLRFDFTHFTPMTQEEIRRVEILVNGHIMGNSPVEAREMPAT 638 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DA+A+GA AL G KY D VRVV V SS LCGGTHV GEI I+SE+ I Sbjct: 639 DALAAGATALFGEKYGDVVRVVKVG-----EVSSELCGGTHVHGAGEIGFFKIISEAGIA 693 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA TG A + + G +++ + +A+ LK G V+ +VE++ R+LQ + Sbjct: 694 AGVRRIEAQTGSGALAVVHGMEDEQRGIATLLKAEGGTVLDKVEKLVAGQRELQ-----K 748 Query: 778 KLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L+ L+ K AD V +S + E D+K L+ + D L+++I SGII+L Sbjct: 749 ELETLQARLNASKSADLIQQVREQNGVKILS-VKVEGDAKGLRELSDTLKQRIGSGIIVL 807 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G S +A++L+ VT DL R+ A D+ + A ++ GG GGG+P +AQ+GG + Sbjct: 808 -GTSDAARANLLVAVTADLAGRWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPEHLAE 865 Query: 888 AIAGV 892 A+ V Sbjct: 866 ALEAV 870 >gi|197119994|ref|YP_002140421.1| alanyl-tRNA synthetase [Geobacter bemidjiensis Bem] gi|197089354|gb|ACH40625.1| alanyl-tRNA synthetase [Geobacter bemidjiensis Bem] Length = 875 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/899 (44%), Positives = 548/899 (60%), Gaps = 47/899 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F FFQK GH L+ SS+LIP NDPTL+FTN+GM FK++F G EK Y + QK Sbjct: 6 IRAQFFNFFQKKGHALVESSNLIPRNDPTLLFTNAGMNQFKDVFLGMEKRDYLRAVSSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L + RLY Sbjct: 66 CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIGFAWEFLTKELGLSKDRLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TVY +D+EA +W G+ ++I R DNFWSM +TGPCGPC+EIF+D G PG Sbjct: 126 VTVYTDDDEAADIWHNQEGVPRERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNG---PGT 182 Query: 187 LPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + + +RY+EIWN VFMQF + LPK S+DTGMGLER++ V+Q T Sbjct: 183 GCGSPDCAVGCDCDRYMEIWNNVFMQFNRGKDGVLTPLPKPSVDTGMGLERISAVMQGVT 242 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DL + +I+ EQV+G KY + + V+ RVI DH R+ +FLI DG+LP+NEGRGY Sbjct: 243 SNYDTDLLQGIIRHIEQVSGKKYRDDEKDDVSMRVIADHARAVTFLICDGVLPSNEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRA +A++LG EP++ ++ A+ MG AYPEL++ + +++ + +E+ERF Sbjct: 303 VLRRIMRRAARHAKMLGIAEPVLFRIVDAVNMMMGDAYPELLEREHYVKKVILAEEERFI 362 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TLDRGL +L+ + L +++++G+V FKLYDT G P+D+ DI+ + G +D Sbjct: 363 ETLDRGLAILNEETAALKAKGEKVISGEVIFKLYDTFGFPVDLTADIVESEGFT-LDEDG 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +E+QR +AR + G G I+ L T F+GY Sbjct: 422 FALCMEKQRVKARENWKGSGEQGLADIYKELHGTGITTDFLGYS---------------- 465 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + AIV+ G +VEEA +G ++E+V TPFY E+GGQ GDTG Sbjct: 466 -------EQTAFSTISAIVKGGTLVEEASAGDEIEIVTAATPFYGESGGQAGDTGTISTG 518 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +++T + + VH V G +RT + L I NR + NH+ATHLL AL Sbjct: 519 SGHIEVTGSTRPFTDLIVHRGRVVSGAVRTGEAADLKITVANRAATARNHTATHLLQAAL 578 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS +TPD LRFD TH P+T E++ +E VN I N V +R M Sbjct: 579 REVLGDHVKQAGSLVTPDRLRFDFTHFTPMTQEEIRRVEILVNGHIMGNSTVESREMPAA 638 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DA+A+GA AL G KY D VRVV V SS LCGGTHV GEI I+SE+ I Sbjct: 639 DALAAGATALFGEKYGDVVRVVKVG-----DVSSELCGGTHVHGAGEIGFFKIISEAGIA 693 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA TG A + + G +++ + +A+ LK G V+ +VE++ R+LQ Sbjct: 694 AGVRRIEAQTGSGALAVVHGMEDEQRGIATLLKAEGGTVLDKVEKLVAGQRELQKELETL 753 Query: 778 KLQLNVEDLS--CHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKE 833 + +LN + ++ + N + + +V D+K L+ + D L+++I SGII+L G S Sbjct: 754 QARLNASKSADLIQQVREQNGIKILSVKVDGDAKGLRELSDTLKQRIGSGIIVL-GTSDA 812 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +A++L+ VT DL R+ A D+ + A ++ GG GGG+P +AQ+GG +A+ V Sbjct: 813 ARANLLVAVTADLSARWKAGDIIKAIAPIV-GGNGGGKPELAQAGGSKPEHLAEALEAV 870 >gi|197336333|ref|YP_002155293.1| alanyl-tRNA synthetase [Vibrio fischeri MJ11] gi|197317823|gb|ACH67270.1| alanyl-tRNA synthetase [Vibrio fischeri MJ11] Length = 859 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/907 (42%), Positives = 545/907 (60%), Gaps = 68/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ +L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY+ D+EAF++W K G+ AD+I+RI N DNFW M +TGPCGPC+EI Sbjct: 124 DRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+A Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + +V G Y+ + + RV+ DH+RS S+LI DG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQTLIKEAAKVIG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ L+ E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKIE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E FG+TL+RG+ LL+ L +L + +L+G+ FKLYDT+G P D+ D+ R L ID Sbjct: 362 EENFGRTLERGMALLNEALDNL-EGTVLDGETVFKLYDTYGFPADLTNDVARERDLT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +A+EEQR RAR A G K+ T F GY Sbjct: 420 EDGFEKAMEEQRQRAREAGQFGTDYNAVIKV-------ESETVFHGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 D T +S++ A+ ++GE V+ +G + ++ DQTPFYAE+GGQ GD G Sbjct: 460 ---------DSTEAKASVI-ALFREGEEVDALSAGDEAILILDQTPFYAESGGQCGDAGI 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + +TD K I H +VE G+L + +D R + +NHSATHLL Sbjct: 510 ITVETGKFVVTDTHKIGNAIGHHGKLVE-GVLSKADHAMAQVDETRRAAIILNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + + + EL+ +E VN I N + T + Sbjct: 569 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I SE Sbjct: 629 MDIDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A + Q D+KL AS + +++ +E ++ Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIEAQQKAADKKLNEAAS-----------KAKQLEKEIQQ 732 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L+ A ++ + +IA + + D+K L+ ++D L+ +I SGIIML Sbjct: 733 LKDKLASQESASLIN--KVQEIAGTKVLVAQLDGADNKALRGMVDELKNQIGSGIIMLGN 790 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +S E K ++ VT+DL+ + A +L + A+ + GG GGGRP MAQ+GG + A+ Sbjct: 791 VS-EGKVGLIAGVTKDLIGQVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAEALPNAL 848 Query: 890 AGVASFL 896 A V ++L Sbjct: 849 ASVEAWL 855 >gi|253990685|ref|YP_003042041.1| alanyl-tRNA synthetase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782135|emb|CAQ85299.1| Alanyl-tRNA synthetase [Photorhabdus asymbiotica] Length = 876 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/909 (43%), Positives = 557/909 (61%), Gaps = 55/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHTKGHQVVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRSYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINYAWELLTGKDWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D EA+ +W+ G+ A++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKEKLWVTVYHTDNEAYDIWQNKVGIPAERIIRIGDNKGVPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF + LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRHADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI A VTG + NN + RVI DH+RS +FLI DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIAAVANVTGATDDLNN-KSLRVIADHIRSCAFLIGDGVIP 302 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG T+ L+ L MG+A L + ++E+ L+ Sbjct: 303 SNENRGYVLRRIIRRAIRHGNMLGATDTFFYKLVAPLIEVMGAAGEGLKHQQAIVEQVLK 362 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L L D IL+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 363 TEEEQFARTLERGLQLLDDELVKLSGD-ILDGETAFRLYDTYGFPVDLTADVCRERNIK- 420 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F A+E QR RAR S G G+ E I + E+ + F GYD Sbjct: 421 VDEDGFAVAMENQRRRARESS-GFGADYNELI--KVDER---SDFSGYD----------- 463 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 N + V AI + GE V + +G++ V+ D+T FYAE+GGQ+GD+G Sbjct: 464 ------------HNEQQAKVTAIFRNGESVNQIQAGEEAIVILDKTAFYAESGGQVGDSG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D QK + I H +E+G L L ID + R + +NHSATHL Sbjct: 512 ILSNADCAFCVIDTQKYGQAIG-HIGKLEKGTLSVNHELNAVIDVKRRDAIRLNHSATHL 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL ILG HVSQ GS + LRFD +H + + +++ +ED VN I +N V+T Sbjct: 571 LHAALRQILGEHVSQKGSLVNDKYLRFDFSHFEAMKPEQIRQVEDLVNAEIRKNSSVITE 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A GA AL G KY ++VRV+S+ G S+ LCGGTH S TG+I L I + Sbjct: 631 LMDLEAAKVKGAMALFGEKYEEKVRVLSM-----GNFSTELCGGTHASRTGDIGLFRITA 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEAITG++A + Q + L+ +A +K N+ +V I ++ + L+ Sbjct: 686 ESGTAAGIRRIEAITGKKALESVYQQFDLLQDIAQLVKGDINNLNDKVRGILDKTKVLEK 745 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827 + K Q ++ S K +V + ++S++++ E L++++D L+ ++ S II+L Sbjct: 746 ELQQIKDQNAAQESSSLASKAKEVKGVKLLVSQLNNTEPKTLRTMVDDLKNQLGSAIIVL 805 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 IS + K S+++ VT+DL R A +L A+ + GG GGGRP MAQ+GG + Sbjct: 806 STIS-DDKVSLIVGVTKDLTARIKAGELISSIAQQI-GGKGGGRPDMAQAGGSDVKSLPS 863 Query: 888 AIAGVASFL 896 A+ V ++ Sbjct: 864 ALDSVEDWV 872 >gi|254360816|ref|ZP_04976963.1| alanine--tRNA ligase [Mannheimia haemolytica PHL213] gi|261495705|ref|ZP_05992149.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092290|gb|EDN73359.1| alanine--tRNA ligase [Mannheimia haemolytica PHL213] gi|261308617|gb|EEY09876.1| alanine--tRNA ligase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 875 Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/905 (42%), Positives = 547/905 (60%), Gaps = 55/905 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR +FLEFFQ GH ++PSSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMNQFKDVFLGLEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 TT Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ W+ LT + Sbjct: 61 ATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFGWEFLTSPQWL 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGP 171 L + +LY+TVY+ D+EA+ +W K G+ ++ IIRI N DNFW+M +TGPCGP Sbjct: 121 GLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNKGAPYASDNFWAMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 C+EIF+D G GGLPGS EE G+RYIE+WN+VFMQF + LPK S+DTGMGL Sbjct: 181 CTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQFNRLADGTMEKLPKPSVDTGMGL 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ERM V+Q +NY+ D+F+ LI+ + +K N + RV+ DH+R+ S+LIADG+ Sbjct: 241 ERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLDNKSL--RVVADHIRACSYLIADGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRRI+RRA+ + +LG E L+P L T MG A L Q + I++T Sbjct: 299 LPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLVPTLATVMGQAGEVLTQKQAHIQKT 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L++E+E+F +TL+RGL LL+ L+ + ++ L+G+VAFKLYDT+G PLD+ D+ R + Sbjct: 359 LKAEEEQFARTLERGLNLLEEALAKV-ENNTLSGEVAFKLYDTYGFPLDLTADVCRERDI 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID FN + QR RA+A S G+ I K T F GY Sbjct: 418 K-IDEDGFNAEMTAQRERAKASS-SFGTDYNNVIKVDSK-----TCFSGY---------- 460 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 T+ + V + G+ VE SG+ V+ D+TPFYAE GGQ+GD Sbjct: 461 ------------TETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G + ++ D QK + +F H + G L + +D + R +++NHSAT Sbjct: 509 SGQISAEICNFEVVDTQKYGQ-VFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD++ + IT ++L+ +E VN + +N+ V+ Sbjct: 568 HLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENIQVI 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+ E A A GA AL G KY + VRV VE D S LCGGTHV TG+I L I Sbjct: 628 IEEMDIESAKAKGAMALFGEKYGEVVRV--VEMSD---FSIELCGGTHVKQTGDIGLFKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE ++ AG+RRIEA+TG+ A + L + ++ A LK + V ++ ++ E+ ++ Sbjct: 683 TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAKRT 742 Query: 771 --QLIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 +L K KL DL+ +I VN + + V+ K L++++D L+ ++ S ++ Sbjct: 743 EKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLGSAVV 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + + E K ++++ VT+DL D+ NA L A+ + GG GGGRP MA +GG Sbjct: 803 VF-ATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKV-GGKGGGRPDMAMAGGSEPQHL 860 Query: 886 DQAIA 890 QA++ Sbjct: 861 LQALS 865 >gi|307132211|ref|YP_003884227.1| alanyl-tRNA synthetase [Dickeya dadantii 3937] gi|306529740|gb|ADM99670.1| alanyl-tRNA synthetase [Dickeya dadantii 3937] Length = 875 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/909 (43%), Positives = 553/909 (60%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT + F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIIYAWELLTSPQWFGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYATDDEAYDIWANEVGVPHERIIRIGDNKGAPYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NY+IDLFK LI + V G N + RVI DH+RS +FLIADG++P Sbjct: 244 ISAVLQHVNSNYEIDLFKALIAEAASVVGTDDLNNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL + + L+E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGTLIKVMGPAAEELQRQQGLVEQALK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL+LLD + L K + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 NEEEQFARTLERGLLLLDEEIKQL-KGDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E QR RAR S G G+ + SL +T F GY+ + D Sbjct: 420 VDEEGFERAMEAQRQRARDAS-GFGAD-----YNSLIRVDESTTFCGYE--------RTD 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ S V AI +QGE V+E +G V+ +TPFY E+GGQ+GD G Sbjct: 466 QQ---------------SKVVAIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D QK + I H + +G LR + +D+ R ++ +NHSATHL Sbjct: 511 ELTSAAARFSVADAQKYGQAIG-HIGKLTQGSLRVNDKVDAVVDHVRRDRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + +++ +ED VN I +NLPV T Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDSYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLPVETD 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A A GA AL G KY + VRV+S+ G S LCGGTH TG+I L IVS Sbjct: 630 VMALDAARAKGAMALFGEKYEENVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A L Q++ L + +K N+ +V + E R L+ Sbjct: 685 ESGTAAGIRRIEAVTGENAIVALHHQNDLLHEVTQLVKGDSNNLADKVRSLLERTRGLEK 744 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ S K D+N + ++ S V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQQAAQESSSLSSKAKDINGVKLLVTQLSNVEPKLLRTMVDDLKNQLGSAVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K S++ VT++L DR A +L A + GG GGGRP MAQ+GG + + Sbjct: 805 STVA-DGKVSLIAGVTKELTDRVKAGELIGFVANQV-GGKGGGRPDMAQAGGSDVDALPS 862 Query: 888 AIAGVASFL 896 A+ + +++ Sbjct: 863 ALTSIEAWV 871 >gi|262369620|ref|ZP_06062948.1| alanyl-tRNA synthetase [Acinetobacter johnsonii SH046] gi|262315688|gb|EEY96727.1| alanyl-tRNA synthetase [Acinetobacter johnsonii SH046] Length = 892 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/928 (43%), Positives = 538/928 (57%), Gaps = 76/928 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL +F+ GH + SSSL+P NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 4 AEIREAFLSYFESQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT E L + Sbjct: 64 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTGEAWLALPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY TVY D+EAF +W K GL A +IIRI N DNFW+M +TGPCGPCSEI Sbjct: 124 DKLYATVYHTDDEAFDIWNKEIGLDASRIIRIGDNKGGQYASDNFWAMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GGLPG+ EE G+R+IEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGDHIWGGLPGTPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNI---VNHRVIVDHLRSS 282 VLQ +NY+IDLF+HL++A+ ++ G+ + +G + + +V+ DH RS Sbjct: 244 AVLQHVNSNYEIDLFQHLLKAAAEIIGLDTAALEAEAREKGTPVQYPASLKVVADHARSC 303 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 SFLIADG+ P+NEGRGYVLRRI+RRA+ + LG T +L L MG AYPEL Sbjct: 304 SFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGSFFHKMLQPLIEVMGQAYPELEA 363 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 K IE L E+E+F KTL++GL LL+G L+ L K ++ G+V FKLYDT+G P D+ Sbjct: 364 QKARIEAQLLKEEEQFAKTLEQGLKLLEGELAQL-KGSVIPGEVVFKLYDTYGFPTDLTA 422 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 DI R L ID F + QR RAR +G + S+ + G TQF GY Sbjct: 423 DIARERDLT-IDEAGFEVEMAAQRQRAR------DAGKFAIDYNSVVKVEGETQFDGY-- 473 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 D T G I+ AI + GE V+E V G + +V +QTPFYA Sbjct: 474 --------------------DATVGEGQII-AIYKDGEQVDEVVEGDEALIVLNQTPFYA 512 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+GDTG D ++ D KK+ G FVH IV G ++ ++ T+ R Sbjct: 513 ESGGQIGDTGIFKNDTGIFEVQDT-KKSGGAFVHQGIVTVGSIKLAQNVEATVKADIRAA 571 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NHSATHLLH AL ILG HV Q GS + D LRFD + +P++ +L+ IE VN Sbjct: 572 TARNHSATHLLHAALRQILGEHVQQKGSLVASDILRFDFANDQPVSFEQLQEIERLVNAE 631 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS----VEYEDGGVHSSALCGGTH 698 + N V T +++ E A A GA L G KY D VRV+S +E ++ S LCGG H Sbjct: 632 VIANSAVTTELLDIESAKAKGAMMLFGEKYGDEVRVLSMGSIIEEKN---FSIELCGGIH 688 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V TG+I L I SE + AG+RRIEA+TG +A D + ++ LK + + Sbjct: 689 VKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKAIEVTQKADRDINTINGLLKAQKDQTLE 748 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLN--------VEDLS-CHKIADVNFMSHIISEVDSKEL 809 +VE + + LQ K+ QLN E LS +A + + +D+K L Sbjct: 749 KVEALVDTASSLQ----KQIEQLNQKLASFQAAELLSQVQTLAGRQTLITTVQNMDAKSL 804 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 +++ D ++ K+++ +I+L G+ + K S++ V +D A D+ + A L GG GG Sbjct: 805 RNLHDGVKSKLENAVIVLAGVEGD-KVSLIASVAKDFTASIKAGDIIKHLATEL-GGKGG 862 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLK 897 G+P +AQ G P K +A + ++L+ Sbjct: 863 GKPDLAQGGAPLNEKFATVMADLTAWLE 890 >gi|90408728|ref|ZP_01216876.1| alanyl-tRNA synthetase [Psychromonas sp. CNPT3] gi|90310179|gb|EAS38316.1| alanyl-tRNA synthetase [Psychromonas sp. CNPT3] Length = 869 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/888 (43%), Positives = 540/888 (60%), Gaps = 52/888 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + + S IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK+ F G E+ Y Sbjct: 4 IKSTSEIRQGFLDFFANKGHQVVSSSSLVPANDPTLLFTNAGMNQFKDTFLGSEQRSYVR 63 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E L Sbjct: 64 ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWEYLTVELGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L+ITVYD+D EA K+W + G+ + RI DNFWSM +TGPCGPC+EIF+D G Sbjct: 124 PKEKLWITVYDKDPEAEKIWIEEIGVDPACLSRIGAKDNFWSMGDTGPCGPCTEIFYDHG 183 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I GG PG+ EE G+RYIEIWNLVFMQ+ + LPK S+DTGMGLER++ +LQ Sbjct: 184 EHIWGGPPGTPEEDGDRYIEIWNLVFMQYNRHADGTMVDLPKPSVDTGMGLERISAILQN 243 Query: 240 KTNNYDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NY+IDLF+ LI+ +VTG E ++ RV+ DH+RS FLI DG++P+NEGRG Sbjct: 244 CHSNYEIDLFQALIKKVAEVTGATDLEDKSL---RVVADHIRSCGFLICDGVMPSNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LG + L +MG YPEL + + +E+ LR E+E+F Sbjct: 301 YVLRRIIRRAVRHGNKLGAQGVFFFKIYGELILQMGDTYPELGKQRDFVEKILRLEEEQF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTL RGL +LD L L + +++G+ FKLYDT+G P D+ DI R L IDI F Sbjct: 361 AKTLVRGLQILDNALESL-EGNVISGETVFKLYDTYGFPADLTADIARERDLI-IDIDGF 418 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 N ++EQR+RA+ G+ + + F K TQF+GY+ L+ Sbjct: 419 NTLMDEQRTRAKKVD-HFGTDYNDGLKFDEK-----TQFLGYEHLQH------------- 459 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGD 537 S+ V +V++GE+V G+ V+ QTPFYAE+GGQ+GD+G + D Sbjct: 460 ----------SATVSILVKEGELVPALNQGEHGHVILKQTPFYAESGGQVGDSGRLVLKD 509 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 GI +TD +K + F+H VE G + ++ +D + R+ ++++HSATHLLH AL Sbjct: 510 GI-FNVTDTKKSGD-TFLHIGYVESGNISVHDEIIAEVDSERRKAIALHHSATHLLHAAL 567 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 LG HV+Q GS D LRFD +H + ++S L+ + VN I N+ V+T++ + E Sbjct: 568 RQTLGEHVTQKGSLCDADKLRFDFSHFEGLSSQVLEQVNYLVNSAIRDNVSVLTKLSDIE 627 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY++ VRVVS+ G S+ LCGGTH S TG + L +I SES I Sbjct: 628 EAKTAGAMALFGEKYDEMVRVVSM-----GALSTELCGGTHTSRTGNMGLFFIRSESGIA 682 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA G+ A L + +K ++ ++ + E R L+ Sbjct: 683 AGVRRIEACVGKAAELALHDVMSQFTKSCELVKGDASSLSDKILQTLERNRALEKELHTL 742 Query: 778 KLQLNV---EDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGIS 831 K+++ DL + I +N + +I++ +D K L+ +DA++ K+QSGI++L Sbjct: 743 KIKMAASAGSDLVANAII-INGVKVVIADLPGIDPKSLRDSVDAMKNKMQSGIVVLGTAV 801 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + K S+++ VT+DL + A +L + A + GG GGGRP MA +GG Sbjct: 802 ADDKVSLIVGVTKDLTKKVKAGELVNVVAAPV-GGKGGGRPDMAMAGG 848 >gi|160899488|ref|YP_001565070.1| alanyl-tRNA synthetase [Delftia acidovorans SPH-1] gi|205830045|sp|A9C0B9|SYA_DELAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160365072|gb|ABX36685.1| alanyl-tRNA synthetase [Delftia acidovorans SPH-1] Length = 874 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/907 (42%), Positives = 536/907 (59%), Gaps = 56/907 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR +FL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y+ T Sbjct: 7 TVADIRKSFLDFFASKGHTIVESSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYKRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L + Sbjct: 67 SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI N DNFW MA+TGPCGPCSEI Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 187 FYDHGAHVAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF+ LI+A+ + T + + +VI DH+R+++FL+ADG++P+N Sbjct: 247 AILQHVHSNYEIDLFQALIKAAARETHIA--DIETPSLKVIADHIRATAFLVADGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L MG AYP++ + + I E LR E Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKTPFFHKLVKDLVAVMGDAYPKIREQEARITEVLRVE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G ++L GDVAFKL+DT+G PLD+ D+ RGL+ +D Sbjct: 365 EERFFETLANGMEILDAALA--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERGLS-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+EEQ+++ARA K+ +L+ A F GY L E K Sbjct: 422 EAGFQTAMEEQKNKARAAG-------KFKMDRALEYTGDANAFTGYQKL------AEAAK 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V+ A+ +G V+E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 469 VV-----------------ALYAEGSAVQELKAGQSGVVVLDTTPFYAESGGQVGDQGVI 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G R + D K +F HH ++E G L+ ++ +D Q R NHS TH++H Sbjct: 512 STAGARFAVEDTLKIKADVFGHHGVLESGSLKVGDAVQAEVDTQLRAATMRNHSVTHIMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H++P+T+ E++ IE VN I N P R+M Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNQPVTAEEIREIERRVNAEILANTPTDARVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A A+GA L G KY D VRV+ + S LCGGTHV TG+I L +V E Sbjct: 632 DIESAKATGAMMLFGEKYGDSVRVLDIG------SSRELCGGTHVQRTGDIGLFKVVGEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+TG+ A ++L + + A+ LK + R+ E+ R L ++ Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPTAELNTRIGGALEQIRALEKEV 745 Query: 773 IHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + DV ++ + D+K L+ MD L+ K+ + I+L Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRDTMDKLKDKLGAAAIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT+ R A DL A + GG GGG+P MA +GG + + A+ Sbjct: 806 VDGD-KVQLAAGVTKAETSRIKAGDLVNFVASQV-GGKGGGKPDMAMAGGTDASGLPAAL 863 Query: 890 AGVASFL 896 AGV +++ Sbjct: 864 AGVHAWV 870 >gi|94987623|ref|YP_595556.1| alanyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00] gi|205830129|sp|Q1MP42|SYA_LAWIP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94731872|emb|CAJ55235.1| Alanyl-tRNA synthetase [Lawsonia intracellularis PHE/MN1-00] Length = 884 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/896 (41%), Positives = 523/896 (58%), Gaps = 45/896 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M V+ IR FL +F+ H+ +PSSSLIP +DP+L+FTN+GMV FK +FTGQE Y Sbjct: 1 MLTVNDIRQKFLGYFKNYNHQEIPSSSLIPRDDPSLLFTNAGMVQFKKVFTGQETRNYLR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW +T+E +L Sbjct: 61 ATTAQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIQFAWAFITEELNL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + LYIT+Y +D++A+ +W G+ +I R+ DNFWSM +TGPCGPCSEI FDQG Sbjct: 121 SKEFLYITIYKDDDDAYDIWVNTIGVEPSRIYRMGEKDNFWSMGDTGPCGPCSEIHFDQG 180 Query: 181 E--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E C S + +R++EIWNLVFMQ+EQ ER ILPK SIDTGMGLER+ + Q Sbjct: 181 ETFCCGDNCGIGSCDCDRFLEIWNLVFMQYEQLPSGERVILPKPSIDTGMGLERIVAICQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 +K++NYD DLF+ +IQ + G+ Y+ + + RVI DH R+ +F+IADGILP+NEG Sbjct: 241 QKSSNYDTDLFQPIIQYMASIAGVHYKKHEETDIALRVIADHSRAIAFMIADGILPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + + +G +P + + + MG Y EL + + E+E Sbjct: 301 RGYVLRRLIRRAFRFGKQIGMNQPFLYKTVNKVVELMGDIYTELYSRSEFMSRVVFDEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF TLD+GL+LL+ L+ L + L GD+AFKLYDT+G PLDI+ DI + A +D Sbjct: 361 RFSITLDKGLILLEAELNALKEKNTKELPGDIAFKLYDTYGFPLDIINDIASKKHFA-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F ++EQ+ RAR+ G G E + +L E ++FIGY+ L G+ Sbjct: 420 EANFQHLMQEQKERARSQWKGSGEKRIEACFQTLLEDGMQSEFIGYENLSGT-------- 471 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 IV + G +EE + V+ D TPFY +GGQ GD G Sbjct: 472 --------------GRIVALLDIDGLPIEELPTKSSGYVITDMTPFYGTSGGQTGDIGIL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + Q+ D K A + VH V G + + +L + R + NH+ TH+L Sbjct: 518 STITGKTQVVDTLKPATNLIVHVVTVTSGTILLDQEALLVVSESERLDTARNHTCTHILQ 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 L ILG HV Q GS ++P LRFD TH P+T E+ +IE VN II NLP+ M Sbjct: 578 SVLQKILGDHVRQAGSLVSPTRLRFDFTHIAPLTEEEIHAIELQVNTIIMANLPLRVEFM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 +++ A+ GA AL KY + VRVV++ E+ S LCGGTH++STG+ IVSE+ Sbjct: 638 DQQSALEKGAMALFEEKYGNIVRVVTIGSEN-QTASIELCGGTHLTSTGQAGCFIIVSET 696 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEAITG+ +++ ++L + A+ LK VV +V I E + LQ Sbjct: 697 GIAAGVRRIEAITGRNTLAYIKEYQKELSTTAAILKTKPEKVVEKVTSILSENKNLQ--- 753 Query: 775 AKRKLQLNVEDLSCH---------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 K L LS +I +++ ++ + K L+ +MD ++ K+ SGI+ Sbjct: 754 -KTVDTLESSSLSNQGKHLLDNLTRINNIDVLTANLKNFSLKALRDIMDDIRSKLSSGIV 812 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L ++ K +L+ V++DL F A +L + V G GGGRP AQ+GG N Sbjct: 813 CLAS-TEGTKVHLLLYVSKDLHHNFTASELIK-KIVVPIHGAGGGRPDQAQAGGTN 866 >gi|299067646|emb|CBJ38855.1| alanyl-tRNA synthetase [Ralstonia solanacearum CMR15] Length = 888 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/915 (42%), Positives = 545/915 (59%), Gaps = 59/915 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y T+ Sbjct: 11 ASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRSYTRATS 70 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 71 VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAD 130 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSEIF Sbjct: 131 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 190 Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230 +D G I GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGMGL Sbjct: 191 YDHGPEIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGL 250 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI DG+ Sbjct: 251 ERLAAILQHVHSNYEIDLFEALIAAASRETNTKDLSNNSL--RVIADHIRACSFLIVDGV 308 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL A+ + + Sbjct: 309 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVVQMGEAYPELRDARDRVVDV 368 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 LR+E+ RF +T++ G+ +LDG L L +L+G++AFKL+DT+G PLD+ QD+ C Sbjct: 369 LRTEEARFFETIEHGMSILDGALGELKASGANMLDGELAFKLHDTYGFPLDLTQDV-CRE 427 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 +D +F+ A+ QR +ARA +G + +L T F GYD L Sbjct: 428 NDVIVDEAAFDAAMNRQREQARA------AGKFKMAVGTLDYTGDKTTFHGYDQL----- 476 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 ++E ++ V A+ G V+ GQ VV D TPFYAE+GGQ+ Sbjct: 477 VRE-----------------TARVTALFVDGASVDAMQPGQTGVVVLDHTPFYAESGGQV 519 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + + D QK +F HH + G+L+ ++ +D R + NHS Sbjct: 520 GDQGTLKAATVWFDVADTQKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAARRARTMRNHS 579 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LG+HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 580 ATHLMHKALREVLGAHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFANAA 639 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 ++M +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I L Sbjct: 640 TNAQVMGFDDAVKNGAMALFGEKYGDEVRVLSIGT------SKELCGGTHVARTGDIGLF 693 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ + Sbjct: 694 KIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQVK 753 Query: 769 KL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSG 823 L +L K KL + D + DV ++ + D+K L+ MD L+ K+++ Sbjct: 754 TLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLKTA 813 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I+L +S + K +++ VT D R A +L A+ + GG GGGRP MAQ+GG + Sbjct: 814 AIVLGSVS-DGKVALIAGVTADATARIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPD 871 Query: 884 KADQAIAGVASFLKK 898 K QA+AGV +++++ Sbjct: 872 KLPQALAGVTAWVQQ 886 >gi|149927912|ref|ZP_01916162.1| alanyl-tRNA synthetase [Limnobacter sp. MED105] gi|149823351|gb|EDM82584.1| alanyl-tRNA synthetase [Limnobacter sp. MED105] Length = 878 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/913 (42%), Positives = 542/913 (59%), Gaps = 58/913 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ IR FL+FF GH + SSSL+P NDPTL+FTNSGMV FK++FTG++K Y T+ Sbjct: 3 VADIREKFLDFFASKGHTKVASSSLVPGNDPTLLFTNSGMVQFKDVFTGKDKRAYTRATS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+LLT + L Sbjct: 63 SQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKENAIQYAWELLTTVYKLPPE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 RLY+TVY ED+EA+ +W K G+ A++IIRI N DNFW MA+TGPCGPC+EIF Sbjct: 123 RLYVTVYQEDDEAYNIWNKQVGVPAERIIRIGDNKGARYASDNFWQMADTGPCGPCTEIF 182 Query: 177 FDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G + GG PGS +E G+RYIE+WNLVFMQF++ LPK +DTGMGLER+A Sbjct: 183 YDHGPEVWGGPPGSEQEDGDRYIEVWNLVFMQFDRTADGVLHPLPKPCVDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPA 293 VLQ +NY+IDLF+ LI+A+ + + + N+ RVI DH+R+ SFL+ DG++P Sbjct: 243 VLQHVHSNYEIDLFQTLIKAAAREVTAQGNAVELTNNSLRVIADHIRACSFLVVDGVIPG 302 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG +P L+ L +EMG AYPEL +A ++ L++ Sbjct: 303 NEGRGYVLRRIIRRAIRHGYKLGCRKPFFNALVGDLVSEMGEAYPELAKAAAQVQSILKA 362 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERF +T++ G+ +LD L L K +L+G+ AFKL+DT+G PLD+ D+ R ++ + Sbjct: 363 EEERFFETIENGMAILDSALGALPKGGMLDGETAFKLHDTYGFPLDLTADVCREREMS-V 421 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D +F++A+ +Q+ +ARA K+ L T+F GYD L + Sbjct: 422 DEAAFDEAMNKQKQQARAAG-------KFKMDADLAYSGVVTEFKGYDALEVA------- 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 ++ + AI G V +GQ+ VV DQTPFYAE+GGQ+GD G Sbjct: 468 ---------------NATITAIYVNGTSVNSIAAGQQGVVVLDQTPFYAESGGQVGDQG- 511 Query: 534 AIGDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 I +G ++ D QK +F HH + G L+ ++ +D R + NHSA Sbjct: 512 EISNGSACLNLFRVLDTQKIQANVFGHHGELVTGELKVGDAVGAQVDQYQRNRTIRNHSA 571 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H AL +LG HVSQ GS + + RFD H +T ++ +E VN+ I N Sbjct: 572 THLMHKALREVLGDHVSQKGSLVDAEKTRFDFAHHSAMTPEQIAQVERIVNEEILANAET 631 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 RIM+ E A ++GA L G KY D VRV+ + S LCGGTHV TG+I L Sbjct: 632 QARIMDIESAKSAGAMMLFGEKYGDTVRVLDIG------SSRELCGGTHVQRTGDIGLFK 685 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I SES + AGIRR+EA TG A +++++A L+V ++ +I ++ + Sbjct: 686 ITSESGVAAGIRRVEATTGLGAMEFAQKAQAQVEAIAQSLRVPATEATAKIGQIMDQVKN 745 Query: 770 L--QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGI 824 L +L K KL + D + D++ ++ + D K+L+ D L+ K+ + Sbjct: 746 LEKELDRLKSKLAASQGDDLAGQAVDIDGVKVLAAKLEGADVKQLREAADKLRDKLGNAA 805 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++L + E K S++ V++D + A DL A+ + GG GGGRP MAQ+GG Sbjct: 806 LVLATVL-EGKVSLIASVSKDATAKVKAGDLVNFVAQQV-GGKGGGRPDMAQAGGTQPEN 863 Query: 885 ADQAIAGVASFLK 897 D A+A V ++K Sbjct: 864 LDAALASVVDWVK 876 >gi|39995259|ref|NP_951210.1| alanyl-tRNA synthetase [Geobacter sulfurreducens PCA] gi|48428506|sp|P61701|SYA_GEOSL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|39982021|gb|AAR33483.1| alanyl-tRNA synthetase [Geobacter sulfurreducens PCA] gi|298504264|gb|ADI82987.1| alanyl-tRNA synthetase [Geobacter sulfurreducens KN400] Length = 875 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/902 (42%), Positives = 548/902 (60%), Gaps = 45/902 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF GH ++PSS LIP NDPTL+F N+GM FK+ F G EK Y + QK Sbjct: 6 IRARFLKFFADRGHAVVPSSPLIPHNDPTLLFANAGMNQFKDCFLGLEKRDYVRACSSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LTK+ LD+ RLY Sbjct: 66 CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFLTKDLGLDKDRLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TVY +D+EA +W G+ ++I R DNFW+M +TGPCGPCSEIF+D G + G Sbjct: 126 VTVYTDDDEAADIWHLQEGVPRERIYRFGEKDNFWAMGDTGPCGPCSEIFWDNGPEVGCG 185 Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P + + +RY+EIWN VFMQF + LPK S+DTGMGLER++TV+Q +NY Sbjct: 186 SPDCAVGCDCDRYMEIWNNVFMQFNRSADGVLTPLPKPSVDTGMGLERISTVMQGVKSNY 245 Query: 245 DIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 D DLF+ +I E+++G +Y + + V+ RV+ DH+R+++FLI DG+LP+NEGRGYVLR Sbjct: 246 DTDLFQGIIGHVEKLSGKRYRHSEKDDVSMRVMADHVRATTFLICDGVLPSNEGRGYVLR 305 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RIMRRA +A++LG+ EP++ ++ A+ MG AYPEL++ + I + +R+E+ERF +TL Sbjct: 306 RIMRRAARHAKMLGFAEPVICRMVEAVNAMMGDAYPELLEREEYIRKVIRAEEERFAETL 365 Query: 363 DRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 DRGL +L+ ++ L + ++ G+ F+LYDT G P D+ DI+ + G ID F Sbjct: 366 DRGLAILNEAVADLKNEGRTVIPGETLFRLYDTFGFPTDLTADIVRSEGFT-IDEDGFEA 424 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E QR +AR H G G ++ +L + ++F GY+ Sbjct: 425 CMERQREQAREHWKGSGEEGIAEVHKTLHSRGVRSRFTGYE------------------- 465 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S V +++ G V EA +G +VE++ D TPFY E+GGQ+GDTG Sbjct: 466 ----ARTAYSPVTVLLKGGAEVAEATAGDRVEIITDATPFYGESGGQVGDTGTISTGSAH 521 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++T+ + + VH V G +R + L + R + NH+ATHLL AL + Sbjct: 522 VEVTETLRPFPDLIVHRGTVVEGTIRQGDACDLKV-APGRDATARNHTATHLLQSALRQV 580 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q+GS + PD LRFD TH +T E++ +E+ VN I N V R M ++A+ Sbjct: 581 LGDHVKQSGSLVGPDRLRFDFTHFAAMTPEEIRRVEEIVNSCIMANDDVHAREMALDEAM 640 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY D VRVV V G S LCGGTHV + G+I I+SE+ I AG+ Sbjct: 641 EIGATALFGEKYGDTVRVVRV-----GEVSMELCGGTHVHAAGDIGFFKILSEAGIAAGV 695 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG A H+ +++ K +A+ +K G+ V R++ + + +Q + + Sbjct: 696 RRIEALTGMGALRHVQQLEDERKEIAALIKAEGGDNVERLQRLLTRQKDMQREIETLESR 755 Query: 781 LNVEDLSCHKIADVNFMSHI-----ISEVDS-KELKSVMDALQKKIQSGIIMLVGISKEK 834 LN S +ADV ++ + ++EVD K+L+ + D L+ ++ SG++ L G KE Sbjct: 756 LNAA-RSADLLADVREVNGVKVLATLAEVDDPKKLRELADTLKDRLGSGVVAL-GCVKEG 813 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 KA++L+ VT+DL R A DL R + ++ GG GGG+P +AQ+GG +K +A+ V Sbjct: 814 KANLLVAVTKDLTGRVKAGDLIRQLSPII-GGSGGGKPELAQAGGTLPDKLGEALGKVCE 872 Query: 895 FL 896 + Sbjct: 873 LV 874 >gi|254480113|ref|ZP_05093361.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2148] gi|214039675|gb|EEB80334.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2148] Length = 866 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/883 (44%), Positives = 551/883 (62%), Gaps = 50/883 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL++F+++ H+ + SSSL+P +DPTL+FTN+GMV FK+ F G + Y T+ Q+ Sbjct: 6 IREAFLDYFEQHEHQRVASSSLVPGDDPTLLFTNAGMVQFKDTFLGNDPRSYVRATSSQR 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT L RL+ Sbjct: 66 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWNFLTGTLGLPPERLW 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +T + D+EA +LW G ++I R+ DNFW M +TGPCGPC+EIF+D G +PGG Sbjct: 126 VTCHVSDDEAEELWVNEIGFPRERITRL-DEDNFWQMGDTGPCGPCTEIFYDHGPDVPGG 184 Query: 187 LPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 PGS EE +RYIEIWNLVFMQF + + + LP S+DTGMGLER+A V+Q+ +NY+ Sbjct: 185 PPGSPEEDMDRYIEIWNLVFMQFNRDSSGKMHPLPAPSVDTGMGLERIAAVMQQVHSNYE 244 Query: 246 IDLFKHLIQASEQVTGM-KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 IDLF+ LI+++ + + E N++ RVI DH+RS +FLIADG+LP NEGRGYVLRRI Sbjct: 245 IDLFQALIKSAASILDVDDLEHNSL---RVIADHIRSCAFLIADGVLPGNEGRGYVLRRI 301 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LG T+P L L EMG AYPEL++ + IE+ L +E+E+F KTLD Sbjct: 302 IRRAVRHGNKLGATQPFFFQLTATLAKEMGGAYPELVKLQPQIEKALLTEEEQFAKTLDN 361 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ +L+ L+ L DEI GDV FKLYDT G P+D+ DI R L +DI ++ A+ + Sbjct: 362 GMQILEEALAGLQGDEI-PGDVVFKLYDTFGFPVDLTNDIARERELR-LDIAGYDAAMAQ 419 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR+R++ G + K+ ++ K G+T+F GYD LRG Sbjct: 420 QRTRSQ-------EGGSFKLDYNDALKLEGSTEFTGYDSLRG------------------ 454 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 V A+++ GE V+ + + VV TPFY E+GGQ+GDTG +G++L++ Sbjct: 455 -----EGTVTALLKDGEEVDFLGTDESGIVVLSSTPFYGESGGQVGDTGYITAEGLKLEV 509 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 T+ KA +HH G +R + +D R++ +NHSATHLLH AL ++LG Sbjct: 510 TNT-TKASDQHLHHVNTLTGTIRQGDIVHSVVDDSLRQRTRLNHSATHLLHSALRSVLGD 568 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS + + LRFD +H + +T ELK IE VND + N V TR+M+ ++AI +G Sbjct: 569 HVQQKGSLVDSERLRFDFSHFEGVTGEELKRIESIVNDQVRANTEVSTRVMSMDEAIEAG 628 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRV+S+ E G S LCGGTHV+ TG+I L+ I SES + AG+RRI Sbjct: 629 ATALFGEKYGDEVRVLSMG-EAG--FSVELCGGTHVARTGDIGLMRITSESGVAAGVRRI 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 E +TG A + + L ++ +K + NV +V + +E R+L+ A+ K +L Sbjct: 686 EGVTGAGALGQIDVTERYLAAVCDVVKGNSVNVADKVAGLRQENRELEKEVARLKQKLAT 745 Query: 784 ---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 DL+ ++A + ++ + D+K L+ V+D ++ K+ SG+I+L ++ +K A + Sbjct: 746 GAGTDLTAAAVEVAGIKVLAVNVEGADAKSLRDVLDQVKNKLGSGVILLSAVTDDKVA-L 804 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 VT+DL D+ A DL R A L GG GGGRP MAQ GG + Sbjct: 805 TAGVTKDLTDKIKAGDLMREFATRL-GGKGGGRPDMAQGGGSD 846 >gi|126667522|ref|ZP_01738492.1| alanyl-tRNA synthetase [Marinobacter sp. ELB17] gi|126627948|gb|EAZ98575.1| alanyl-tRNA synthetase [Marinobacter sp. ELB17] Length = 876 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/912 (43%), Positives = 562/912 (61%), Gaps = 58/912 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FLE+F + GH ++PSSSL+P +DPTL+FTN+GM FK++F G+E+ Y T+ Sbjct: 3 TAELRQAFLEYFNQQGHAIVPSSSLVPADDPTLLFTNAGMNQFKDLFLGREQRDYTRATS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E +L Sbjct: 63 SQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWNFLTSEQWLNLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L+ITVY ED+EAF +W + G+ A++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KTKLWITVYAEDDEAFDIWNQEIGVPAERIVRIGDNAGGRYSSDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IFFD G + GG PGS E+G+RYIEIWN+VFMQ+ + E LPK S+DTGMGLER+ Sbjct: 183 IFFDHGPDVAGGPPGSPDEDGDRYIEIWNVVFMQYNRTADGEMLNLPKPSVDTGMGLERV 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 VLQ +NY+IDLF+ L++A+ V G + RV+ DH+RS FLI DG++P+ Sbjct: 243 TAVLQGVHSNYEIDLFQDLLKAASDVLGGV--ATTEASLRVVADHIRSCCFLIGDGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRG+VLRRI+RRA + LG P L+ AL MG A+P+L+ + IE+ L Sbjct: 301 NEGRGFVLRRIIRRAARHGNKLGANGPFFYKLVGALVELMGEAFPQLVSSHKQIEKVLLQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTLD GL LL+ ++ L K +++ G+ F LYDT+G P+D+ DI RGL + Sbjct: 361 EEEQFVKTLDNGLRLLEQDIAEL-KGDVIPGETVFALYDTYGFPVDLTNDIARERGLT-L 418 Query: 414 DIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D + +A+E QR RARA S G+ SLK + G T+F GY + G + ++ Sbjct: 419 DYQGYEKAMEAQRERARAASKFGIDYNAE-----SLKLE-GVTEFSGYQNIDGHERIR-- 470 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S IV + + E +EA+ +V ++TPFYAE+GGQ+GDTG Sbjct: 471 ----------------SVIVGSEHKNAEAGDEAI------IVLERTPFYAESGGQVGDTG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G R Q+TD +K+ +H V G L + + ID++ R + NHSATHL Sbjct: 509 LLTWSGGRFQVTDTRKEGNN-HLHIGTVVEGELFPGLEVDARIDHERRERTKRNHSATHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HVSQ GS + PD LRFD +H + +++A+L+ IE VN I +N V T Sbjct: 568 LHAALRKVLGEHVSQKGSLVDPDKLRFDFSHLEAVSAADLQEIERQVNQQILENTSVATE 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + + E A A GA AL G KY D VRV+S+ DG +S LCGGTHV+ TG+I L+ I S Sbjct: 628 VTDMEQAQAKGALALFGEKYGDSVRVLSMG-SDG--YSVELCGGTHVNRTGDIGLMRITS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES I +G+RRIEA+TG A + + L+ A +K S+ ++V +V++ + R+L Sbjct: 685 ESGIASGVRRIEAVTGFGALEWVGSAERTLREAARLVKGSRESLVEKVQQTLDRNRQLEK 744 Query: 771 QLIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ K KL + DL S ++A + ++ + D + L D L+ K+ G+++L Sbjct: 745 EIDGLKAKLASSAGSDLASSAVEVAGLRVVAAEMPGADRQALMETADQLKNKLGEGVVVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + ++ K +++ VT+ R A D+ + L A++ G GGGRP MAQ GG + ++ Sbjct: 805 ASV-EDGKVTLVSGVTKSATGRVKAGDIMKHLCAQL--DGKGGGRPDMAQGGGNDASRLT 861 Query: 887 QAIAGVASFLKK 898 + +AGVA +++K Sbjct: 862 EVLAGVAGWVEK 873 >gi|86146326|ref|ZP_01064650.1| alanyl-tRNA synthetase [Vibrio sp. MED222] gi|85835805|gb|EAQ53939.1| alanyl-tRNA synthetase [Vibrio sp. MED222] Length = 860 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/916 (42%), Positives = 543/916 (59%), Gaps = 81/916 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ H+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF++W K G+ ADKI+RI +DNFW+M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFEIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK ++DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G N + RVI DH+RS SFLIADG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEVVGHDDLSNQSL--RVIADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + +G L+ L MGSA EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAADELKKQQELVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 362 EEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F +A+E QR RAR A G T K+ + T+F GY G Sbjct: 420 DEEGFEKAMEAQRKRAREAGQFGTDYNATIKVDTN-------TEFCGYTGTEG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + A+ GE V +G K ++ ++TPFYAE+GGQ GD G Sbjct: 466 ----------------AGEISALFVDGEEVSSLSAGDKAIIILEETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK F HH + G+ + T+D + R +S+NHSATHL Sbjct: 510 TLKTASGLFKVQDTQKLGNA-FAHHGELVEGVFAQGDKVEATVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD ++ + +T A++K +E VN + +N + T Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 E I AGIRRIEA+TG+ A + Q +EKL A K + + Sbjct: 684 EGGIAAGIRRIEAVTGEAALDAVEAQANAYEEKLAESAKKAKSLE--------------K 729 Query: 769 KLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++QL+ K + VE++S K+ + I D+K L++++D + ++ S Sbjct: 730 EIQLLKEKMAAAEGANIMGKVEEISGTKV-----LVAAIEGADNKNLRTMVDNAKNQVGS 784 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 GII++ ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 785 GIILIANVA-DGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDV 842 Query: 883 NKADQAIAGVASFLKK 898 +A+ V +L++ Sbjct: 843 EALPEALKSVRIWLEE 858 >gi|82701157|ref|YP_410723.1| alanyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196] gi|123545319|sp|Q2YD40|SYA_NITMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|82409222|gb|ABB73331.1| alanyl-tRNA synthetase [Nitrosospira multiformis ATCC 25196] Length = 862 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/902 (42%), Positives = 544/902 (60%), Gaps = 53/902 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FLEFF+ +GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K Y + Sbjct: 4 SEVRQKFLEFFETHGHTIVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRAASA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT + + R Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRNAIRFAWEFLTDILKIPRER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-GECI 183 L+ITVY ED+EA +W G+ + + RI T DNFW M +TGPCGPCSEIF+D E Sbjct: 124 LWITVYAEDDEAADIWLNEVGIDSSRFTRIATQDNFWQMGDTGPCGPCSEIFYDHGPEIP 183 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G + +G+RY+EIWNLVFMQ+ + + LP+ S+DTGMGLER++ V+Q+ +N Sbjct: 184 GGPPGTPNADGDRYVEIWNLVFMQYNRDSAGTLHPLPRPSVDTGMGLERISAVMQQVHSN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y+IDLF+ LI+A+ + T ++ +N VI DH+R+ SFLIADG++P NEGRGYVLRR Sbjct: 244 YEIDLFQQLIKAAARATNTTDLSSSSLN--VIADHIRACSFLIADGVIPGNEGRGYVLRR 301 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG +P L+ L + MG AYPEL++AK + L+ E+ERF +TL+ Sbjct: 302 IIRRAIRHGYKLGQKQPFFHQLVEDLASVMGQAYPELMEAKTRVSAVLKQEEERFAETLE 361 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ +L+ L D +L+G+ F+LYDT G PLD+ DI RG+A ID F+QA+E Sbjct: 362 NGMQVLEAALRR--GDRMLDGETLFRLYDTFGFPLDLTADIARERGIA-IDEAGFDQAME 418 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYG--ATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +QR RAR TT K Y +T F GY+ LR ++ +VL Sbjct: 419 QQRERAR---------TTSKFIMQEAIAYSGPSTTFHGYESLR------QEGQVL----- 458 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 AI ++G VE +G + +V D+TPFYAE+GGQ+GD+G + Sbjct: 459 ------------AIYKEGSRVEFIEAGDEAVIVLDKTPFYAESGGQVGDSGELLAANGTF 506 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + D QK +F H ++ G L T +++ +D R + NHS THL+H AL +L Sbjct: 507 AVADTQKIQADVFGHKGLLRSGRLATGDAVLAEVDRAARARTERNHSVTHLMHKALREVL 566 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV Q GS + + RFD H++P+T AE++ +E VN I N R+M EDA Sbjct: 567 GHHVQQKGSLVDANKTRFDFAHNQPVTDAEIRKVEMLVNAEILANAATEARMMAIEDAKK 626 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA L G KY+D VRV+ + S LCGGTHV TG+I L IV+ES + AG+R Sbjct: 627 SGAMMLFGEKYSDEVRVLDIGT------SRELCGGTHVKRTGDIGLFKIVAESGVAAGVR 680 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKL 779 R+EA+TG+RA +++ Q+ +L+ +A+ +K + R+ +I + + L +L K KL Sbjct: 681 RVEAVTGERALTYIQEQELQLQRVAAAVKAQPQDAAARITQILDNVKHLERELGRMKSKL 740 Query: 780 QLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 + D ++ + V ++ + E D K L+ +D + K +S + +L + ++ K Sbjct: 741 ASSQGDDFADRVREIKGVKVLAVCLEEADPKTLREAVDKFKNKFKSCVTVLAAV-EDGKV 799 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++ VT DL R A DL A+ + GG GGGR +AQ+GG + A+ VAS++ Sbjct: 800 KLIAGVTSDLTARLKAGDLVNFVAQQV-GGKGGGRADLAQAGGTVPDSLPAALESVASWV 858 Query: 897 KK 898 ++ Sbjct: 859 EQ 860 >gi|94263078|ref|ZP_01286897.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1] gi|93456621|gb|EAT06729.1| Alanine--tRNA ligase [delta proteobacterium MLMS-1] Length = 925 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/909 (41%), Positives = 551/909 (60%), Gaps = 40/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + ++IR FL++F H ++ SS+L+P +DPTL+FTN+GMV FK +FTG+E+ Y+ Sbjct: 45 MMDGNTIRQKFLDYFASRQHTVVASSALVPHDDPTLLFTNAGMVQFKKVFTGEEQRDYRR 104 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+LAWD LT+E L Sbjct: 105 AVSCQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEEAIRLAWDFLTRELGL 164 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 L+++VY++D+EA ++W+ I GL +I+R+ DNFW+M +TGPCGPCSEI DQG Sbjct: 165 SPANLWVSVYEDDDEAHRIWEGIEGLPPGRIVRLGEKDNFWAMGDTGPCGPCSEIHLDQG 224 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 +P P G + +R++EIWNLVFM++E+ LP+ SIDTGMGLER+A V+Q Sbjct: 225 AAVPCQSPECGVDCDCDRFLEIWNLVFMEYERGADGTMKPLPRPSIDTGMGLERIAAVVQ 284 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEG 296 K NNYD DLF LI + ++ G++Y + V+ RVI DH R+++FL+ADG+LPANEG Sbjct: 285 GKHNNYDSDLFLPLIHRTCELAGVEYGRSARVDTALRVIADHARATTFLVADGVLPANEG 344 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR+MRRA+ + R LG +EP + + + MG AY L ++ L+ + +R E+E Sbjct: 345 RGYVLRRVMRRAIRFGRGLGLSEPFLGEVCATVLETMGGAYSHLEASRELLRKVVRHEEE 404 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TLD GL +L L+ L + + L G+ FKLYDT+G P+DI +D+ GLA D Sbjct: 405 RFLETLDHGLGMLAAELTRLKESGERGLAGEFIFKLYDTYGFPVDIAKDVAQEEGLAA-D 463 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F +A+ QR ++R G G G + L E +T+F+GY R Sbjct: 464 EAGFEEAMARQRQQSRQSWKGGGLGELGPGFRELLEGGVSTEFVGYQSRR---------- 513 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 P+ V G+++ A +GQ+V +V QTPFYAE GGQ+GD+G Sbjct: 514 ---HHAPLTALLDVD---------GKMLNTATAGQQVVLVCSQTPFYAEGGGQIGDSGEI 561 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G R ++ + + E + H A V G L ++L + R++++ +H+ATHLLH Sbjct: 562 TGLHGRARVDNTIRVGEQLVAHQAEVVEGRLERGEEVLLAVGEGRRQRVAAHHTATHLLH 621 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + P LRFD TH P+ +A ++ +E VN I N + T ++ Sbjct: 622 AALRRVLGEHVKQAGSLVEPGRLRFDFTHFSPLGTAAIREVERLVNVEIRANNSLETAMV 681 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 NR++A+ SGAAAL G KY + VRVV+V G S LCGGTHV +TGEI L I++E+ Sbjct: 682 NRDEALQSGAAALFGEKYGETVRVVTV-----GEFSKELCGGTHVGATGEIGLFRIIAEA 736 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I A RRIEA+ G+ A +++ +LA LK G + GR++++ ++L+ Sbjct: 737 GIAASTRRIEAVCGEEALYRCQQLEDEWAALAGRLKCGPGELAGRIDKLLARQKELERKL 796 Query: 775 AKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A+ Q + DL +I ++ + K L+ + D ++ K+ S I ++ Sbjct: 797 AQMASQASGFDLERELSRVREIGGARLLACRVPADSVKTLRELGDKVRDKLGSTGIAVLA 856 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + ++L +V ++L R+ A +L + A ++ GG GGGRP MAQ+GG + DQA+ Sbjct: 857 AEIDGQVALLALVGKELQGRYKAGELVKQVAALV-GGKGGGRPDMAQAGGGDPAGIDQAL 915 Query: 890 AGVASFLKK 898 A V ++K Sbjct: 916 AAVPEIVEK 924 >gi|59711143|ref|YP_203919.1| alanyl-tRNA synthetase [Vibrio fischeri ES114] gi|71657966|sp|Q5E7G5|SYA_VIBF1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|59479244|gb|AAW85031.1| alanyl-tRNA synthetase [Vibrio fischeri ES114] Length = 859 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/910 (42%), Positives = 547/910 (60%), Gaps = 74/910 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEIRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRNYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ +L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY+ D+EAF++W K G+ AD+I+RI N DNFW M +TGPCGPC+EI Sbjct: 124 DRLLVTVYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+A Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + +V G Y+ + + RV+ DH+RS S+LI DG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQTLIKEAAKVIG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ L+ E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKIE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E FG+TL+RG+ +L+ L +L + +L+G+ FKLYDT+G P D+ D+ R L ID Sbjct: 362 EENFGRTLERGMAILNEALDNL-EGTVLDGETVFKLYDTYGFPADLTNDVARERELT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +A+EEQR RAR A G K+ T F GY Sbjct: 420 EDGFEKAMEEQRQRAREAGQFGTDYNAVIKV-------ESETVFHGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 D T +S+V A+ ++GE V+ +G ++ DQTPFYAE+GGQ GD G Sbjct: 460 ---------DSTEAKASVV-ALFREGEEVDALSAGDDAILILDQTPFYAESGGQCGDAGI 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + +TD K I H +VE G+L + +D R + +NHSATHLL Sbjct: 510 ITVETGKFVVTDTHKIGNAIGHHGKLVE-GVLSKADHAMAQVDETRRAAIILNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + + + EL+ +E VN I N + T + Sbjct: 569 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVKAEELRQVERIVNQQIRLNHTIETDL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I SE Sbjct: 629 MDIDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A + Q D+KL AS + +++ +E ++ Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIEAQQKAADKKLNEAAS-----------KAKQLEKEIQQ 732 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGIIM 826 L K KL +K+ ++ +++++D +K L+ ++D L+ +I SGIIM Sbjct: 733 L-----KDKLASQESASLINKVQEIAGTKVLVAQLDGAENKALRGMVDELKNQIGSGIIM 787 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L +S E K ++ VT+DL+ + A +L + A+ + GG GGGRP MAQ+GG + Sbjct: 788 LGNVS-EGKVGLIAGVTKDLIGQVKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDAEALP 845 Query: 887 QAIAGVASFL 896 A+A V ++L Sbjct: 846 NALASVEAWL 855 >gi|312884640|ref|ZP_07744343.1| alanyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367732|gb|EFP95281.1| alanyl-tRNA synthetase [Vibrio caribbenthicus ATCC BAA-2122] Length = 860 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/912 (42%), Positives = 549/912 (60%), Gaps = 73/912 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLQFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ L + Sbjct: 64 SSQRCLRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIAFAWEFLTEILKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W + G+ AD+I+RI +DNFW M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFNIWNQQIGVPADRIVRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V ++ N + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQTLIKAAAEVISVEDLSNQSL--RVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAKGTFFFKLVGVLADVMGSAGEELKRQQALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ +L+ L D+ L+G+ FKLYDT+G P D+ D+ RG I Sbjct: 362 EEENFGRTLERGMAILNDALD-ASADKTLDGETVFKLYDTYGFPADLTNDVARERGFI-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+E QR RAR + G+ E I AT+F GY Sbjct: 420 DEAGFEQAMEVQRQRAR-DAGQFGTDYNEAIKVD-----SATEFCGY------------- 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V A+ + VE +G K +V D+TPFYAE+GGQ GD+G Sbjct: 461 ----------TSTSALGTVDAMFVESRQVESLSAGDKAVLVLDETPFYAESGGQCGDSGQ 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 D + D QK I H+ ++ G+L ++ + +D R +S+NHSATHLL Sbjct: 511 ICTDSGIFVVEDTQKLGNAI-AHYGWMKEGVLASKDKVEALVDKGRRNAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + D LRFD +H + +T+ E+K +E VND + N V T I Sbjct: 570 HAALRKVLGEHVTQKGSLVKADNLRFDFSHLEAMTADEIKQVERLVNDHVRLNHDVETDI 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A + GA AL G KY+D+VRV+S+ G S+ LCGG HVSSTG+I L I SE Sbjct: 630 MDIESAKSKGAMALFGEKYDDQVRVLSM-----GDFSTELCGGIHVSSTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 S I AGIRRIEA+TG A + Q +EKL A + + + +E +K Sbjct: 685 SGIAAGIRRIEAVTGDAALDVIEAQHQQYEEKLAESAQ-----------KTKALEKEIQK 733 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826 L K K+ ++ +VN + +++++ DSK L++++D ++ ++ SG+++ Sbjct: 734 L-----KDKMAAAESANIMGQVKEVNGVKVLVAKLEGADSKNLRTMVDDIKNQLGSGVVL 788 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++++ K ++ VT+DL+ A +L ++ A+ + GG GGGRP MAQ+GG + Sbjct: 789 LANVNQD-KIGLIAGVTKDLVGDVKAGELVKMVAEQI-GGKGGGRPDMAQAGGTDVTALP 846 Query: 887 QAIAGVASFLKK 898 AI V +L++ Sbjct: 847 TAIDSVQPWLEE 858 >gi|260773533|ref|ZP_05882449.1| alanyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14] gi|260612672|gb|EEX37875.1| alanyl-tRNA synthetase [Vibrio metschnikovii CIP 69.14] Length = 860 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/905 (42%), Positives = 546/905 (60%), Gaps = 59/905 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLSFFESKGHQIVDSSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AIQ AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAIQYAWEFLTEVVKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY D+EAF +W + G+ D+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 ERLLVTVYQTDDEAFNIWHQQIGIPQDRIIRIGDKPGGKAYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PGS+EE G+R+IEIWN+VFMQF + + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGPPGSAEEDGDRFIEIWNVVFMQFNRHADGKMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + + Q +NY+ID+F+ LI+A+ +V G + N + RV+ DH+RS +FLI DG++P+ Sbjct: 244 SAITQGVHSNYEIDVFQTLIKAAAEVIGYQDLANQSL--RVVADHIRSCAFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MGSA EL + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVAPLAEVMGSAGEELKRQHALVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ +L+ L + + +L+GD FKLYDT+G P D+ D+ RG I Sbjct: 362 EEENFGRTLERGMAILNDALDAV-EGSVLDGDTVFKLYDTYGFPADLTNDVARERGFT-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F A+EEQR RAR +G + SL + G T+F GY Sbjct: 420 DEEGFEAAMEEQRQRAR------DAGNFGTDYNSLIKVDGETEFCGYS------------ 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 QK S V A+ G+ V +G K VV + TPFYAE+GGQ GD G Sbjct: 462 --ATQK---------MSPVSALFVDGQEVSALSAGDKAIVVLETTPFYAESGGQCGDAGL 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++ D QK I H+ +++ G+L + + +D + R +S+NHSATHLL Sbjct: 511 LRTASGVFKVEDTQKLGNAI-AHYGVMQEGVLASSDHVEALVDEKRRNAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AE+K +E VN I N + T + Sbjct: 570 HAALRQVLGEHVTQKGSLVRAENLRFDFSHLEAMTAAEIKQVERLVNAQIRLNHVIETHV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+++VRV+S+ G S+ LCGG H S TG+I L I+SE Sbjct: 630 MDIESAKQKGAMALFGEKYDEQVRVLSM-----GDFSTELCGGIHASHTGDIGLFKILSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AGIRRIEA+TG+ A L Q K + K+S+ + + +++ +E ++L+ Sbjct: 685 GGVAAGIRRIEAVTGEAALDALETQQHKYEE-----KLSE--AMQKTKQLEKEIQQLKDK 737 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 A + ++ + IA V + ++ D+K L+ ++D L+ ++ SGII+L ++ + Sbjct: 738 LASQASANLIDQVKL--IAGVKVLVAQLNGADNKALRGMVDELKNQLGSGIILLGNVA-D 794 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K ++ VT DL + A +L L A+ + GG GGGRP MAQ+GG + A+ V Sbjct: 795 DKVGLIAGVTNDLTAKVKAGELVNLVAQQV-GGKGGGRPDMAQAGGSDAQALPLALESVD 853 Query: 894 SFLKK 898 +++ + Sbjct: 854 AWIAE 858 >gi|78047331|ref|YP_363506.1| alanyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123585336|sp|Q3BUQ7|SYA_XANC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78035761|emb|CAJ23452.1| Alanyl-tRNA synthetase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 882 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/914 (42%), Positives = 539/914 (58%), Gaps = 60/914 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR+ FL FF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 STSQIRSDFLAFFEGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY DEEAF LW+ + G+ +I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 DRLLVTVYHTDEEAFALWRDMIGIPESRIVRIGDNKGAPYASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FFDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + +TG+ N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIGKASALTGITDLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P ++P L MG AYPEL+ A+ + L +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKMVPTLVELMGEAYPELVVAQDTVARALLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + D V S +I+ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDAGMKIFDEVASR--SQDIIPGADAFRLYDTYGFPVDLTADIARERGMR-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+E QR ARA G G + L T F+GY+ Sbjct: 423 MEGFEFAMERQRETARAAGK-FGGGVA--LPADLVASMSPTVFLGYEAYDADALK----- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+++QG VE A +G +V V D+TPFYAE+GGQ+GD+G Sbjct: 475 -----------------VVALLKQGRPVERAEAGDEVIVFTDRTPFYAESGGQVGDSGQL 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G G+ + +TD QK A H + G L L ID Q R + +NHSATHLLH Sbjct: 518 SGPGVSINVTDTQKFAGQFHGHVGRISEGALALGDVLAGGIDTQRRGKTILNHSATHLLH 577 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +P T+ EL IE VN + N V M Sbjct: 578 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPFTADELAVIERKVNAEVRANHGVEVHNM 637 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 638 AMQEALDFGAMALFGEKYGENVRVLKM-----GGYSTELCGGTHVTRTGDIGLFKITSEG 692 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TGQ A ++ ++ +L A+ L + VV +V + E ++L+ Sbjct: 693 GVSSGVRRIEAVTGQGALDYVADEERRLLEAANLLGGNTSEVVDKVRALTERQKRLE--- 749 Query: 775 AKRKLQLNVEDLSCHKIADVNFMS----------HIISEVDSKELKSVMDALQKKIQSGI 824 R+L+ L+ AD+ + + D+K L+ MD L++++ + Sbjct: 750 --RELESLKAKLASGATADLGASAIDVVGVKVVAVRLEGFDAKALRDAMDRLKQQLGDSV 807 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G S K A V V L +++++ GG GGGRP +AQ GG +G Sbjct: 808 IVLAGASGGKVALVAGVNGSPTGKVKAGELLGHIASQI--GGKGGGRPDLAQGGGEDGPA 865 Query: 885 ADQAIAGVASFLKK 898 A+ GV ++K+ Sbjct: 866 LATALDGVPLWVKQ 879 >gi|326794049|ref|YP_004311869.1| alanyl-tRNA synthetase [Marinomonas mediterranea MMB-1] gi|326544813|gb|ADZ90033.1| alanyl-tRNA synthetase [Marinomonas mediterranea MMB-1] Length = 871 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/914 (42%), Positives = 557/914 (60%), Gaps = 68/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +FL +F+ H+++ SSSLIP NDPTL+FTN+GMV FK++F G +K Y TT Sbjct: 4 SELRQSFLSYFESKQHQVVESSSLIPGNDPTLLFTNAGMVQFKDVFLGTDKRNYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTK L Q + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIGYAWEFLTKVAKLPQEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +TVY ED+EAF +W K GL +KIIRI N DNFW M +TGPCGPC+E+F+ Sbjct: 124 LLVTVYAEDDEAFDIWHKEIGLPKEKIIRIGDNKGARYASDNFWQMGDTGPCGPCTEVFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D GE I GG PGS EE G+R+IEIWN+VFMQF + + LPK S+DTGMGLER+A + Sbjct: 184 DHGEHIWGGPPGSPEEDGDRFIEIWNVVFMQFNRSANGDMAPLPKPSVDTGMGLERIAAI 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPAN 294 LQ +NY+IDLF++LI+AS G N++ + RVI DH+RS SF+I DG++P+N Sbjct: 244 LQGVHSNYEIDLFQNLIKASANAVGT----NDLESQSLRVIADHIRSCSFMIVDGVVPSN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG L+ AL +EMG AYPEL + K + L E Sbjct: 300 EGRGYVLRRIIRRAIRHGNKLGQKGVFFHTLVEALDSEMGEAYPELRKLKERVASILLKE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTLD+G+ +L+ +S LG +++ G+ FKLYDT+G P D+ D+ L ID Sbjct: 360 EEQFAKTLDQGMRILEEAISELGDSKVIPGETVFKLYDTYGFPADLTNDVARENELE-ID 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-----YGATQFIGYDLLRGSKFM 469 F A+EEQR+RAR+ S FS+ T+F GY L G Sbjct: 419 EAGFEAAMEEQRARARSASN-----------FSMDMSGDVSIDSETEFTGYTELEGD--- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 C +V+A++ G V+E +GQ V+ TPFY E+GGQ G Sbjct: 465 -------C-------------VVEALIVDGSNVDEIQAGQDAVVLLKSTPFYGESGGQAG 504 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G G G ++++ K+ + +H +++ G ++ ++ +D R ++NHSA Sbjct: 505 DQGWLRGPGA-FKVSNTAKQGKA-HLHQGVLKEGAIKVGDTVAAQVDRSMRNATALNHSA 562 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H AL I+G HV+Q GS + + LRFD +H + +T+AE++ +ED VN+ I N V Sbjct: 563 THLVHEALRRIVGDHVNQKGSLVNAERLRFDFSHFEGLTNAEIEQVEDMVNEQIRLNHEV 622 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 +T IM+ + A GA AL G KY+ VRV+++ G +S LCGGTHV TG+I L Sbjct: 623 ITEIMDVDSAKEKGAMALFGEKYDSEVRVLTM----GADYSIELCGGTHVKRTGDIGLFK 678 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IV+E I AG+RRIEA+TG+ A + + L +A+ +K ++ N + +V + ++ R Sbjct: 679 IVTEGGIAAGVRRIEAVTGKAAIDAVRQTENALNGVAAVVKGNKENALEKVSALNDQARA 738 Query: 770 LQL---IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGI 824 LQ + DL+ I D+ ++++V D K L+ ++D L+ K++S + Sbjct: 739 LQKEIDALKSKLAAAAGSDLAGQAI-DIEGGKLLVAQVESDPKALRDLLDQLKSKLESAV 797 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L ++ + K S++ VT++L + A DL ++ A ++ G GGGRP MAQ+GG N Sbjct: 798 ILLAAVN-DGKVSLIAGVTKELTKKVKAGDLIKMVAPLV-DGKGGGRPDMAQAGGNNPAA 855 Query: 885 ADQAIAGVASFLKK 898 A+ V +++K+ Sbjct: 856 LPDALEQVPAWVKE 869 >gi|222054217|ref|YP_002536579.1| alanyl-tRNA synthetase [Geobacter sp. FRC-32] gi|221563506|gb|ACM19478.1| alanyl-tRNA synthetase [Geobacter sp. FRC-32] Length = 876 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/900 (43%), Positives = 554/900 (61%), Gaps = 54/900 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F FF++ GH ++ SS+L+P NDPTL+FTN+GM FK++F G EK Y + QK Sbjct: 6 IREKFFRFFEERGHTVVESSNLVPRNDPTLLFTNAGMNQFKDLFLGLEKRGYVRACSSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AWD LT+E LD+ RLY Sbjct: 66 CVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWDFLTRELKLDKNRLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TVY +D+EA ++W K G+ ++I R DNFWSM +TGPCGPC+EIF+D G G Sbjct: 126 VTVYTDDDEAAEIWNKQEGVPVERIYRFGEKDNFWSMGDTGPCGPCTEIFWDNGPGTGCG 185 Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P + E G +RY+EIWN VFMQF + K LPK S+DTGMGLER+ TV+Q T+N Sbjct: 186 SP-TCEVGCDCDRYMEIWNNVFMQFNRDAKGNMTPLPKPSVDTGMGLERICTVMQGVTSN 244 Query: 244 YDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 YD DL + +I+ E+++G +Y + + V+ RVI DH R+ +FLI DG+LP+NEGRGYVL Sbjct: 245 YDTDLLQGIIRHVEKLSGKRYRQDEKDDVSMRVIADHARAITFLICDGVLPSNEGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRRA +A++LG+ EP++ ++ A+ MG AYPEL++ + +++ + +E+ERF +T Sbjct: 305 RRIMRRAARHAKMLGFAEPVLYRIVDAVNAMMGDAYPELLEREEYVKKVIHAEEERFMET 364 Query: 362 LDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRGL +L+ ++ L K +L G+V F+LYDT G P+D+ DI+ GL ID F Sbjct: 365 LDRGLSILNEEVALLKKQAGTVLPGEVVFRLYDTFGFPVDLTADIVANEGLT-IDEDGFV 423 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +E+QR +AR + G G +I+ +L K + F+GYD Sbjct: 424 LCMEKQRLQARENWKGSGEEGLAEIYKNLHGKGIRSAFVGYD------------------ 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S + ++++G V EAV G++VEVV TPFY +GGQ GD G Sbjct: 466 -----EQTAYSPITVLLREGREVTEAVVGEEVEVVVGTTPFYGASGGQAGDIGVISTGNA 520 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 L++ K + VH +VE+G ++ + L + + R + NH+ATHLL AL Sbjct: 521 HLKVVGTSKPFADLTVHRVLVEKGTVKVGDAADLKVLTRERNATARNHTATHLLQSALRQ 580 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++G HV Q GS +T D LRFD TH + + EL+ +E+ VN I +N V + M +A Sbjct: 581 VVGDHVKQAGSLVTADRLRFDFTHFSAMAADELRRVENIVNGYIMENSDVSSVEMAAAEA 640 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + SGA AL G KY DRVRVV V G SS LCGGTHV + G+I IVSE+ I AG Sbjct: 641 MQSGATALFGEKYGDRVRVVRV-----GEVSSELCGGTHVQAAGDIGFFKIVSEAGIAAG 695 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+TG A ++ +++ K LA+ +K G V+ RVE + ++LQ R++ Sbjct: 696 VRRIEAVTGSGAIEYVQQLEDEQKHLATLIKAEGGGVIDRVERLLARQKELQ-----REV 750 Query: 780 QLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + L+ K AD + ++ + D K L+ + D+L+ ++QSG+I+L G Sbjct: 751 EELQSRLNASKSADLLAGVRESNGIKILATRVETGDPKGLRDLSDSLKDRLQSGVIVL-G 809 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + KA++L+ VT+DL DR A D+ + A ++ GG GGG+P +AQ+GG D+A+ Sbjct: 810 CAAAGKANLLVAVTKDLTDRCKAGDIIKSLAPII-GGSGGGKPELAQAGGTKPENLDEAL 868 >gi|161830958|ref|YP_001596677.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 331] gi|205830041|sp|A9NCN7|SYA_COXBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|161762825|gb|ABX78467.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 331] Length = 865 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/904 (41%), Positives = 555/904 (61%), Gaps = 52/904 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R TFL +F++ HE++P SSLIP NDPTL+FTN+GMV FK++F G E YQ Sbjct: 2 NSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT L Sbjct: 62 SIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLPP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +RL++TV+ +D E+ +W K ++ ++ R DNFW M +TGPCGPC+EIF+D G Sbjct: 122 QRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGPT 181 Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PGS+E +G+RY+EIWNLVFMQ+ + K L K S+DTGMGLER+ V+Q Sbjct: 182 ISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLTAVMQGVH 241 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NYDIDLF++L++A T +K E + + RVIVDH+RS +FLIADG++P+NEGRGYVL Sbjct: 242 DNYDIDLFQYLLKALR--TLLKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYVL 299 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG EP L L EMG AYP L +++ LIE+T++ E+ +F T Sbjct: 300 RRIIRRAVRHGYKLGQEEPFFYQLTKPLLEEMGGAYPLLRKSQALIEQTIKQEEIQFSNT 359 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L +GL +LD ++ L +I G++ F+LYDT+G P D+ DI R +D F++A Sbjct: 360 LTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDFV-MDYAGFDKA 417 Query: 422 LEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E QR ++ +AH I G TQF+GY+ L Sbjct: 418 MERQREQSQQAHQFVANYAQKASIG-------GETQFVGYETL----------------- 453 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N ++++ +++Q + + +K VV D+TPFYAE+GGQ+GD G + Sbjct: 454 -----NSQANVI-SLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D +K+ + I++H + +G L + + +D +R + NHSATHLLH AL + Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDV-SRFDIMRNHSATHLLHEALRRV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG V Q GS + LRFD +H+KP+T EL+++E VN I NL +M E+A Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G +Y VRV+ + G S+ +CGGTH TGEI L IVSES AGI Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A ++ +++L+SL+ LK ++ N+ ++ +I E++RKL+ AK K + Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740 Query: 781 LNVEDLSC--HKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + L +++ DV+ + + + VD + L++++D L++K+ I+L I +E + Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVDRETLRAIVDQLKQKLGKAAIVLATI-EEGR 799 Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 ++ VT++ L+ FNA + LA ++ KV GG GGRP +AQ G + A+A V Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV--GGRSGGRPDLAQGAGERPENLEAALAAVPK 857 Query: 895 FLKK 898 +++K Sbjct: 858 WIEK 861 >gi|153206762|ref|ZP_01945603.1| alanyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177'] gi|165918516|ref|ZP_02218602.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 334] gi|212218396|ref|YP_002305183.1| alanyl-tRNA synthetase [Coxiella burnetii CbuK_Q154] gi|120577125|gb|EAX33749.1| alanyl-tRNA synthetase [Coxiella burnetii 'MSU Goat Q177'] gi|165917762|gb|EDR36366.1| alanyl-tRNA synthetase [Coxiella burnetii RSA 334] gi|212012658|gb|ACJ20038.1| alanyl-tRNA synthetase [Coxiella burnetii CbuK_Q154] Length = 865 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/904 (41%), Positives = 556/904 (61%), Gaps = 52/904 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R TFL +F++ HE++P SSLIP NDPTL+FTN+GMV FK++F G E YQ Sbjct: 2 NSNQLRETFLNYFKQLDHEVVPGSSLIPENDPTLLFTNAGMVQFKDVFLGVETRPYQRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 ++Q C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT L Sbjct: 62 SIQPCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKFAWDFLTNVLKLPP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +RL++TV+ +D E+ +W K ++ ++ R DNFW M +TGPCGPC+EIF+D G Sbjct: 122 QRLWVTVFQDDFESESIWLKEMKINPERFSRCGEKDNFWQMRDTGPCGPCTEIFYDHGPT 181 Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PGS+E +G+RY+EIWNLVFMQ+ + K L K S+DTGMGLER+A V+Q Sbjct: 182 ISGGPPGSAEADGDRYVEIWNLVFMQYNRDAKGNLLPLAKPSVDTGMGLERLAAVMQGVH 241 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NYDIDLF++L++A T +K E + + RVIVDH+RS +FLIADG++P+NEGRGYVL Sbjct: 242 DNYDIDLFQYLLKALR--TLLKTEDLHNTSMRVIVDHIRSVAFLIADGVIPSNEGRGYVL 299 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG EP L L EMG AYP L +++ LIE+T++ E+ +F T Sbjct: 300 RRIIRRAVRHGYKLGQEEPFFYQLTKPLVEEMGGAYPLLRKSQALIEQTIKQEEIQFSNT 359 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L +GL +LD ++ L +I G++ F+LYDT+G P D+ DI R +D F++A Sbjct: 360 LTKGLKILDHEMAGLPSRQI-PGNLIFQLYDTYGFPPDLTADIARERDFV-MDYAGFDKA 417 Query: 422 LEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E QR ++ +AH I G TQF+GY+ L Sbjct: 418 MERQREQSQQAHQFVANYAQKASIG-------GETQFVGYETL----------------- 453 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 N ++++ +++Q + + +K VV D+TPFYAE+GGQ+GD G + Sbjct: 454 -----NSQANVI-SLLQNDQPINRLNESEKGVVVLDRTPFYAESGGQVGDQGFLYFEKGS 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D +K+ + I++H + +G L + + +D +R + NHSATHLLH AL + Sbjct: 508 FRVKDTKKQGD-IYLHIGEMLQGHLNVKDKVRAEVDV-SRFDIMRNHSATHLLHEALRRV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG V Q GS + LRFD +H+KP+T EL+++E VN I NL +M E+A Sbjct: 566 LGERVMQKGSLVEAKRLRFDFSHAKPLTPEELQAVERLVNQQIQANLLSTIEVMTPEEAK 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G +Y VRV+ + G S+ +CGGTH TGEI L IVSES AGI Sbjct: 626 KKGALALFGERYGKEVRVLEM-----GDFSTEICGGTHTERTGEIGLFKIVSESGCAAGI 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+TG+ A ++ +++L+SL+ LK ++ N+ ++ +I E++RKL+ AK K + Sbjct: 681 RRIEALTGKAALDYIESAEQQLRSLSDLLKTNRKNLAAKLSQILEDHRKLEKELAKLKQR 740 Query: 781 LNVEDLSC--HKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L + L +++ DV+ + + + V+ + L++++D L++K+ I+L I +E + Sbjct: 741 LASQQLESLINQVVDVHDIRTLAIRLEAVERETLRAIVDQLKQKLGKAAIVLATI-EEGR 799 Query: 836 ASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 ++ VT++ L+ FNA + LA ++ KV GG GGRP +AQ G + A+A V Sbjct: 800 IQLVAGVTKNCLEHFNATELLAPIAEKV--GGRSGGRPDLAQGAGERPENLEAALAAVPK 857 Query: 895 FLKK 898 +++K Sbjct: 858 WIEK 861 >gi|34497059|ref|NP_901274.1| alanyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472] gi|41018171|sp|Q7NXM2|SYA_CHRVO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|34330326|gb|AAQ59280.2| alanyl-tRNA synthetase [Chromobacterium violaceum ATCC 12472] Length = 877 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/913 (43%), Positives = 543/913 (59%), Gaps = 60/913 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL+FF GH+++PSSSLIP NDPTLMFT +GMV FK++F G EK Y T Sbjct: 2 KTSEIRKKFLDFFASKGHQVVPSSSLIPGNDPTLMFTVAGMVQFKDVFLGFEKRDYTRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E L Sbjct: 62 TSQKCLRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWEFLTGEQWLAL 121 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L +TVY D+EA+ +W + GL ADKI+RI N DNFW+M +TGPCGPC+ Sbjct: 122 PKDKLMVTVYATDDEAYDIWHQTVGLPADKIVRIGDNKGAPYASDNFWTMGDTGPCGPCT 181 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G + GG PGS E+G+R++EIWN VFMQF + LPK S+DTGMGLER Sbjct: 182 EIFFDHGPSVAGGPPGSPDEDGDRFMEIWNNVFMQFNRDEAGTLHPLPKPSVDTGMGLER 241 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++TVLQ +NY+ D L++A+ + TG++Y ++ + +VI DH+R+ SF++ADGILP Sbjct: 242 LSTVLQHVKSNYETDALACLVRAAARETGVEYS-QDVPSLKVIADHIRACSFMVADGILP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI RRA+ + LG ++ L EMG AYPEL + + IE+ LR Sbjct: 301 SNEGRGYVLRRIARRAIRHGYKLGQKGLFFHKIVADLVAEMGEAYPELREKQAHIEDALR 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+ +F +TL+ G+ L+D L G L+GD FKLYDT G P+D+ DI RG+ Sbjct: 361 AEEIKFAETLEIGMGLVDSALE--GGKTALDGDTIFKLYDTFGFPVDLTADICRERGIHA 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D+ F +A+E QR R RA S SG KI + ++ T+F GYD Sbjct: 419 -DLEGFERAMEAQRERGRAGSNFKMSG---KIAYDGED----TRFHGYD----------- 459 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V + V A+ + + V+ +G + VV D T FYAE GGQ+GD G Sbjct: 460 ------------KSSVEAKVLALYKGTDPVDSLSAGDEGIVVLDGTAFYAEGGGQVGDVG 507 Query: 533 ---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 A G + D QK F H + RG L+ ++ TID R+ + NHSA Sbjct: 508 EISAAGGIAALFDVADTQKIQGAAFGHKGKLARGALKVGDAVTATIDLHQRQASARNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV Q GS + P+ RFD H + +T+A++ +E VN +IA N V Sbjct: 568 THLLHAALRHVLGGHVVQKGSLVNPERTRFDFAHGEAVTAAQIAELERVVNHVIAANYEV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 +M+ E A SGA L G KY D VRV+++ G S+ LCGGTHV TG+I L Sbjct: 628 KAELMSMEAAQKSGAMMLFGEKYGDEVRVLTM-----GDFSAELCGGTHVKRTGDIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 IV+E + AG+RRIEA+TG+ A +++ QD +K A+ LK + V+ ++ + + + Sbjct: 683 IVAEGGVAAGVRRIEAVTGEGALAYIQAQDALIKEAAAALKAQTSDEVLAKIAALQDSAK 742 Query: 769 KLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823 L+ AK K QL + D AD+N + + +E+ D+ L+ +D L+ K+ S Sbjct: 743 ALEKELAKLKGQLASSAGDSLADAAADINGVKVLAAELPGADNTALRETLDKLKDKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I+L + K +++ VT DL + A +L A+ + GG GGGRP MAQ+GG Sbjct: 803 AIVLAA-KGDGKVALVAGVTADLTGKLKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPE 860 Query: 884 KADQAIAGVASFL 896 D A+ GV +++ Sbjct: 861 NLDAALNGVQAWV 873 >gi|85858185|ref|YP_460387.1| alanyl-tRNA synthetase [Syntrophus aciditrophicus SB] gi|123515492|sp|Q2LPL7|SYA_SYNAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|85721276|gb|ABC76219.1| alanyl-tRNA synthetase [Syntrophus aciditrophicus SB] Length = 878 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/896 (43%), Positives = 546/896 (60%), Gaps = 41/896 (4%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +FL FF+ GH + SSSLIP +DPTL+FTN+GMV FKN F G E Y + Sbjct: 6 SEIRESFLRFFEGKGHTRVSSSSLIPKDDPTLLFTNAGMVQFKNAFLGLEDRGYSRAASC 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+ L + R Sbjct: 66 QKCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKREAIAWAWEYLTEVIQLPKER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ +D+EA+++W + + AD+I+R+ NFW M ETGPCGPCSEI +DQGE Sbjct: 126 LWVTVFQDDDEAYRIWLEEMRIPADRIVRLGEKSNFWMMGETGPCGPCSEIIYDQGEGTG 185 Query: 185 GGLPGSSEE--GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P E +RY+EIWNLVF QF++ LPK +IDTGMGLER+A V Q + Sbjct: 186 CGRPDCHIECGCDRYLEIWNLVFTQFDRDEAGILTPLPKPNIDTGMGLERLAAVAQGVKS 245 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NYD DLF L+ A + TG Y N + V+ RVI DH RS +FLI DGILP+NEGRGYV Sbjct: 246 NYDTDLFAPLLAAISRTTGKPYGKNEEDDVSLRVIADHARSVAFLIGDGILPSNEGRGYV 305 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA + +LLG +P + L P + M YP+L+ K I + + +E++RF + Sbjct: 306 LRRILRRAARHGKLLGLNQPFLHELTPVVIEAMKETYPDLLDKKSYITKVILNEEQRFME 365 Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLD GL +L +S L K + GDV F+LYDT G P D+ DI+ L ID F Sbjct: 366 TLDAGLKILQEEVSRLKKAGTTTIPGDVVFRLYDTFGFPTDLTADIVRRDNLT-IDEDGF 424 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +A+E QR +AR G G ++ L + +T F+G++ Sbjct: 425 QRAMEVQREKARESWKGSGEEAISALYQKLSTQGISTVFVGHE----------------- 467 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + N S I A++Q+ E+V+ G++ E++ +TPFY E GGQ+GDTG G+ Sbjct: 468 ----GVCNAQSQIT-ALLQKEELVDSLAEGEEGELIVAETPFYGEIGGQIGDTGTIEGED 522 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ D ++ + + H V +G R S+ L + RR NHSATHLL A+ Sbjct: 523 FVFEVLDTRRPLDNLISHVGRVIKGRGRKGDSVNLIVAEDKRRATEANHSATHLLQAAMK 582 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 T++G+H+ Q+GS +T + LRFD TH I EL+ IE+ N +I +NLPVVTR++ E+ Sbjct: 583 TVMGNHIKQSGSLVTAERLRFDFTHFSKIEENELEQIENLANAVIRRNLPVVTRVLPLEE 642 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ +GA A+ KY ++VRVV + G S LCGGTH+ TG+I + I+ ES+I A Sbjct: 643 AMKTGATAVFDEKYGEKVRVVRM-----GDFSMELCGGTHIQRTGDIGFIKIIHESAIAA 697 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIH 774 G+RRIEA+TG+ A +H + +LK A LKVS ++ RVE++ ++ ++++ + Sbjct: 698 GVRRIEAVTGREAVNHARRVENELKKAAKLLKVSPFDLGERVEKLIKTQKDQEKEIETLK 757 Query: 775 AKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 + + + + LS +I + ++ ++ D+K L+ D L+ ++QSGII L+G E Sbjct: 758 GRLAAKDSADLLSQAREIRGIRVLTAAVNAPDAKTLRDFGDKLRDRLQSGII-LIGSKAE 816 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 KA +L +VT+DL DR++A + R A V+ GG GGGRP MAQ+GGP ++A+ Sbjct: 817 GKAMLLCLVTKDLTDRYSAGSIIREIAPVV-GGKGGGRPDMAQAGGPEPENLERAL 871 >gi|320197699|gb|EFW72308.1| Alanyl-tRNA synthetase [Escherichia coli EC4100B] Length = 833 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/854 (44%), Positives = 532/854 (62%), Gaps = 56/854 (6%) Query: 43 MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102 M FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF Sbjct: 1 MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60 Query: 103 KERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157 K AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ ++IIRI N Sbjct: 61 KHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 120 Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQN 212 DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q Sbjct: 121 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQA 180 Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272 LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG N + Sbjct: 181 DGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL-- 238 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L+ L Sbjct: 239 RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDV 298 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYD Sbjct: 299 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYD 357 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+D+ D+ R + +D F A+EEQR RAR S G G+ I Sbjct: 358 TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD----- 410 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 A++F GYD L ++ V A+ G+ V+ +GQ+ Sbjct: 411 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAINAGQEAV 447 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 VV DQTPFYAE+GGQ+GD G G + D QK + I H + G L+ ++ Sbjct: 448 VVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQ 506 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ + E+ Sbjct: 507 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEI 566 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 +++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ G S+ Sbjct: 567 RAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTE 621 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L +A LK Sbjct: 622 LCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGD 681 Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSK 807 N+ +V + E R+L+ + K Q ++ + K DVN + ++SE V+ K Sbjct: 682 SNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPK 741 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867 L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L + A+ + GG Sbjct: 742 MLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGK 799 Query: 868 GGGRPHMAQSGGPN 881 GGGRP MAQ+GG + Sbjct: 800 GGGRPDMAQAGGTD 813 >gi|187927840|ref|YP_001898327.1| alanyl-tRNA synthetase [Ralstonia pickettii 12J] gi|187724730|gb|ACD25895.1| alanyl-tRNA synthetase [Ralstonia pickettii 12J] Length = 888 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/916 (42%), Positives = 546/916 (59%), Gaps = 61/916 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y + Sbjct: 11 ASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAAS 70 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 71 VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAE 130 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSEIF Sbjct: 131 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 190 Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230 +D G + GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGMG+ Sbjct: 191 YDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGM 250 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI DG+ Sbjct: 251 ERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGV 308 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL +A+ + E Sbjct: 309 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVVEV 368 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 LR+E+ RF +T++ G+ +LD L L ++L+G++AFKL+DT+G PLD+ QD+ C Sbjct: 369 LRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDV-CRE 427 Query: 409 GLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +D +F+ A+ QR +ARA + +GT L T F GY+ L Sbjct: 428 NDVIVDEAAFDAAMNRQREQARAAGKFKMAAGT-------LDYTGDKTTFHGYEQL---- 476 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 ++E ++ V A+ G V+E GQ VV D TPFYAE+GGQ Sbjct: 477 -VRE-----------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGGQ 518 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G + + D K +F HH + G+L+ ++ +D R + NH Sbjct: 519 VGDQGTLKAATVWFDVVDTLKVQPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRNH 578 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+H AL +LGSHV Q GS + + RFD +H+ P+T +++ +E VN I N Sbjct: 579 SATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFANA 638 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 ++M +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I L Sbjct: 639 ATNAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIG------SSKELCGGTHVARTGDIGL 692 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 693 FKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTSRIVQVQDQV 752 Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +L K KL + D + DV ++ + D+K L+ MD L+ K+Q+ Sbjct: 753 KTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQT 812 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I+L +S + K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 813 AAIVLGSVS-DGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEP 870 Query: 883 NKADQAIAGVASFLKK 898 + QA+AGVA+++++ Sbjct: 871 DNLPQALAGVAAWVQQ 886 >gi|54294686|ref|YP_127101.1| alanyl-tRNA synthetase [Legionella pneumophila str. Lens] gi|59798486|sp|Q5WVQ2|SYA_LEGPL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|53754518|emb|CAH16002.1| alanyl-tRNA synthetase [Legionella pneumophila str. Lens] Length = 860 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/905 (42%), Positives = 554/905 (61%), Gaps = 60/905 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL +F + GH+L+ SSSLIP NDPTL+FTN+GMV FK++F G E YQ T Sbjct: 4 SEIRQAFLNYFVQRGHQLVASSSLIPSNDPTLLFTNAGMVQFKDLFLGLETRPYQRAVTA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ + R Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIPAER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TVY ED EA +W K +S ++ R DNFWSM +TGPCGPC+EIF+D G + Sbjct: 124 LWVTVYKEDLEAEGIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGPEVA 183 Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A V+Q +N Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFNRDREGCLHPLPKPSVDTGMGLERLAAVIQGVHSN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNH---RVIVDHLRSSSFLIADGILPANEGRGY 299 Y+ID F++LI+A Q+ G +I +NH +VI DH+RS SFLI DG+LP+NEGRGY Sbjct: 244 YEIDSFQYLIKAIAQL------GQDIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGY 297 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG P L+ L MG AYPELI +K IE L+ E+ +F Sbjct: 298 VLRRIIRRAVRHGNKLGLPSPFFFKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFT 357 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LL + +L K + L+G+VAFKLYDT+G P+D+ DI+ +GL ID+ +FN Sbjct: 358 RTLEQGLRLLQDHIKNL-KGQELSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFN 415 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 Q +++QR +++A S TT+ + ++ + ++F GY+ Sbjct: 416 QLMQQQREQSQAAS----QFTTD--YHAVSQLDHQSEFHGYE------------------ 451 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + + ++Q+G V+ G K V+ D TPFYAE+GGQ+GD G IG Sbjct: 452 -----KESMEAKIIGLLQEGNEVKSLNKGAKGAVILDHTPFYAESGGQVGDKGLLIGKEF 506 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 Q+ D QK + + VH+ V +G L ++S+ +D+ R + +NH+ATHLLH AL Sbjct: 507 SFQVDDTQKVGQAV-VHYGEVIKGELTLDLSIHAQVDHIRRDAIRLNHTATHLLHAALKQ 565 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+G HV Q GS + + RFD +H +P+T +++ IE+ VN I N V+T++M+ E A Sbjct: 566 IVGQHVQQRGSLVDAERARFDFSHFEPLTPQQIQQIEEVVNAQIRANNEVITQVMDIESA 625 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 SGA AL G KY+D VRV+S+ G S LCGGTH TG+I L IV+E I +G Sbjct: 626 KQSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASG 680 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--- 776 IRR+E +TG+ A + + Q + +LA+ LK + ++ +V ++ + + + + AK Sbjct: 681 IRRVEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKVSQLLLDNKNQEKMIAKLLS 740 Query: 777 RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K Q + D+ +I +N + + +DS+ ++ MD L+ +I S +I+L I ++ Sbjct: 741 EKAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTI-EQN 799 Query: 835 KASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K +V+ V+++++ + NA L R G GGGR MAQ GG + I + Sbjct: 800 KMNVIAGVSKNIIGKTPNAAQLVRHLC-----GKGGGRDDMAQGGGDVPEDLNSKIKEIK 854 Query: 894 SFLKK 898 ++K Sbjct: 855 EMIEK 859 >gi|300113492|ref|YP_003760067.1| alanyl-tRNA synthetase [Nitrosococcus watsonii C-113] gi|299539429|gb|ADJ27746.1| alanyl-tRNA synthetase [Nitrosococcus watsonii C-113] Length = 874 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/904 (44%), Positives = 557/904 (61%), Gaps = 45/904 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + +RT FL++F++ GHE++PSS L+P NDPTL+FTN+GMV FK +F G+E Y Sbjct: 1 MKSSAELRTIFLDYFRRQGHEIVPSSPLVPANDPTLLFTNAGMVQFKEVFLGREARTYDR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ L Sbjct: 61 AASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYAWELLTEVLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL++TV+ ED+EA +W + G+S ++ R DNFWSM ETGPCGPCSEIF+D G Sbjct: 121 PPERLWVTVFKEDDEAANIWLRGIGVSPERFSRCGAEDNFWSMGETGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGSSE EG+RY EIWNLVFMQ+++ + LP+ S+DTGMGLER+A V+Q Sbjct: 181 PEIAGGPPGSSEQEGDRYTEIWNLVFMQYDRDKEGRLSPLPRPSVDTGMGLERLAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NNYDIDLF+HLI A + G++ + + RVI DH+RS +FLI DG+ PANEGRGY Sbjct: 241 VHNNYDIDLFRHLIAAITALPGVQNQEQTSL--RVIADHIRSCAFLIVDGVQPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +LG +P HL L EMG AYPEL++ + +E L+ E+ERF Sbjct: 299 VLRRIIRRAIRHGHVLGLRDPFFYHLAQPLVQEMGEAYPELVRLQSQVERVLKLEEERFN 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL +L+ + HL D ++ G+ F+LYDT G P+D+ DI R L+ +D+ F Sbjct: 359 ETLEQGLKILEQDIIHL-SDGVIPGETIFRLYDTFGFPVDLTADIARERKLS-LDMKGFE 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QA+ QR RARA S + E++ +L+ T+FIGY+ LC K Sbjct: 417 QAMARQRERARAASRFSEEYSAEELQINLE-----TEFIGYEQ-------------LCAK 458 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 G + + + E VE+ +G+ VV DQTPFYAEAGGQ+GD G G Sbjct: 459 -------GQVVALFCLAETMEAVEQLNAGESGMVVLDQTPFYAEAGGQVGDRGTLHGSSG 511 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +TD +K+ VH V G LR S+ ++ Q R +NHSATHLLH AL Sbjct: 512 LFNVTDTRKQG-AAHVHLGEVRLGQLRIGDSIQSEVNRQYRTPTRLNHSATHLLHAALRE 570 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG V+Q GS + D LRFD +H + + S +L+ IE +N I NLPV T++M + A Sbjct: 571 VLGESVAQKGSLVASDRLRFDFSHLEAVQSGQLRQIEHLINAKIRANLPVETQLMPLQQA 630 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + +G AL G KY ++VRV+ + G S LCGGTHV TG+I L I++E + AG Sbjct: 631 LDAGVVALFGEKYGEQVRVLRM-----GDFSMELCGGTHVDRTGDIGLFKIINEMGVAAG 685 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYRKLQLIHA 775 IRRIEA+TG+ A S + + L++L LK S+ + V + ++ ++ ++LQ + A Sbjct: 686 IRRIEAVTGEAALSWVEESEVCLEALMGRLKASRDSAVDKLEQLQQQNRQQEKELQRLKA 745 Query: 776 KRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 K DLS ++ + ++ I VDSK L++ +D L+ K+ ++L G E Sbjct: 746 KLATAGGA-DLSAQAQEVRGIKVLAARIDGVDSKTLRATVDQLKGKLTIAAVVL-GTVAE 803 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K ++ VT++ DR A DL A+ + GG GGGRP MAQ+GG + + D A+ V Sbjct: 804 GKVVLIAGVTKNATDRIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGRHPDNLDAALGLVP 862 Query: 894 SFLK 897 +++ Sbjct: 863 KWVE 866 >gi|300704797|ref|YP_003746400.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957] gi|299072461|emb|CBJ43811.1| alanyl-tRNA synthetase [Ralstonia solanacearum CFBP2957] Length = 880 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/916 (42%), Positives = 543/916 (59%), Gaps = 61/916 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y + Sbjct: 3 ASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAAS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 63 VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSEIF Sbjct: 123 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 182 Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230 +D G I GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGMG+ Sbjct: 183 YDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGM 242 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI DG+ Sbjct: 243 ERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI+RRA+ + LG L+ L T+MG AYPEL +A+ + + Sbjct: 301 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVVDV 360 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 LR+E+ RF +T++ G+ +LDG L L ++L+G++AFKL+DT G PLD+ QD+ C Sbjct: 361 LRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDV-CRE 419 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD-LLRGSK 467 +D +F+ A+ QR +ARA +G + +L T F GYD L+R Sbjct: 420 NDVIVDEAAFDAAMNRQREQARA------AGKFKMTAGTLDYTGDKTTFHGYDQLVRD-- 471 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 ++ V A+ G V+ GQ VV D TPFYAE+GGQ Sbjct: 472 ---------------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGGQ 510 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G + + D K +F HH + G+L+ ++ +D R + NH Sbjct: 511 VGDQGTLKAATVWFDVADTLKVLPEVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRNH 570 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+H AL +LG HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 571 SATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFANA 630 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 +IM +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I L Sbjct: 631 ATNAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIGT------SKELCGGTHVARTGDIGL 684 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 685 FKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRVSEAAAALRAQPSELTQRIVQVQDQV 744 Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQS 822 + L +L K KL + D + DV ++ + D+K L+ MD L+ K+++ Sbjct: 745 KSLEKELERLKSKLAASQGDELVEQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLKT 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I+L +S E K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 805 AAIVLGSVS-EGKVALIAGVTADATGKIKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEP 862 Query: 883 NKADQAIAGVASFLKK 898 +K QA+AGV +++++ Sbjct: 863 DKLPQALAGVTAWVQQ 878 >gi|212704759|ref|ZP_03312887.1| hypothetical protein DESPIG_02823 [Desulfovibrio piger ATCC 29098] gi|212671822|gb|EEB32305.1| hypothetical protein DESPIG_02823 [Desulfovibrio piger ATCC 29098] Length = 889 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/907 (42%), Positives = 538/907 (59%), Gaps = 45/907 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +LEFF +NGH++LPS LIP NDPTL+FTN+GMV FK F G+E Sbjct: 1 MLTAKEIRRRYLEFFARNGHDILPSGPLIPPNDPTLLFTNAGMVQFKKFFLGEEVRDVPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK AI AW +T+E +L Sbjct: 61 VTTSQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAITWAWKFVTEELEL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL++TV+ ED+EA +W++++GL A++I+R+ DNFW+M +TGPCGPCSEI+ DQG Sbjct: 121 PKERLWVTVFREDDEAAAIWQEVAGLPAERIVRMGEKDNFWTMGDTGPCGPCSEIYIDQG 180 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E C P G + +R++EIWNLVF QF+Q R L + +IDTGMGLER+A V Sbjct: 181 EDMACGPDCGIGKC-DCDRFLEIWNLVFTQFDQHADGTRDRLARPNIDTGMGLERIAAVC 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNI-VNHRVIVDHLRSSSFLIADGIL 291 Q K +N+D DLF+ +IQ + ++ G+KY + N++ RVI DH R+++FLIADG L Sbjct: 240 QGKRSNFDCDLFQDIIQYAAELAGVKYSFSAPDTNDVDTALRVIADHARAAAFLIADGTL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRR++RRA+ +A L+G EP + + + MG YPEL + I + Sbjct: 300 PSNESRGYVLRRLIRRALRFATLMGVHEPFLYKVARKVTEIMGEDYPELTEHADFIARAV 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E++RF TL +GL LL+ L+ L K D+++ G+ FKL DT+G PLDI+ D+ RG Sbjct: 360 HEEEQRFSLTLGKGLALLEDQLAELEKAGDKVIPGEFCFKLSDTYGFPLDIITDVSEKRG 419 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLG----SGTTEKIWFSLKEKYGATQFIGYDLLRG 465 + +D+ F + EQR RAR G G+ ++ L + + F GY L Sbjct: 420 FS-VDVAGFEAHMAEQRRRARESQKKSGLLGQDGSGSSLFQQLADDGLQSVFTGYSGL-- 476 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 NG IV + + G VEE +G+K VV +QTPFY E+G Sbjct: 477 --------------------NGQGRIVALLDESGLSVEELPAGRKGYVVTNQTPFYGESG 516 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ GDTG G ++ D QK A + VH+ VE+G+LR + + L+++ R + Sbjct: 517 GQAGDTGRMEGPDGAARVLDTQKPAPTLIVHNIEVEQGLLRIDQEVALSVEEDARMATAR 576 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHS THLLH AL ++LG+HV Q GS + LRFD +H + EL ++E VN I Sbjct: 577 NHSCTHLLHAALRSVLGTHVKQAGSLVNSQRLRFDFSHIAALPPEELAAVERQVNRAIMA 636 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + PV T+ M ++A+AS A AL KY D VRVVS+ +D S LCGGTH+S TG+ Sbjct: 637 DYPVCTKEMKHDEAVASVAMALFNEKYGDTVRVVSMG-DDAHTESVELCGGTHLSHTGQA 695 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 IVSES + AG+RRIEA+TG A + Q +L L++ LK G + RV+ + Sbjct: 696 GSFLIVSESGVAAGVRRIEAVTGWNAYDLAVAQRAELHDLSALLKAKPGQLAERVQALHS 755 Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQS 822 + +KL+ K K +VN + + +++D K L+ +MD ++ +I S Sbjct: 756 DVKKLRKASEKAAASPATGADLVQKATEVNGVKLLTAKLDGVPVKALRDIMDDVRSRIPS 815 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+ L + E K +L+ V++DL RF A L + A GG GGGRP +AQ+GG Sbjct: 816 GVACLATVEGE-KVGLLLYVSKDLHGRFTAPALIKDVAAPC-GGSGGGRPDLAQAGGTKA 873 Query: 883 NKADQAI 889 + + A Sbjct: 874 DGVEAAF 880 >gi|302189037|ref|ZP_07265710.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae 642] Length = 874 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 544/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERDLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G R ++D K G F+HH +V G L + + + R ++NHSATHLL Sbjct: 510 LQGGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGTQVETQVSDEVRNATALNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I + +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHARRTGDISLFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|304413367|ref|ZP_07394840.1| Alanyl-tRNA synthetase [Candidatus Regiella insecticola LSR1] gi|304284210|gb|EFL92603.1| Alanyl-tRNA synthetase [Candidatus Regiella insecticola LSR1] Length = 893 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/917 (42%), Positives = 562/917 (61%), Gaps = 64/917 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH ++ SSSL+P NDPTL+FTN+GM FKN+F G E+ T Sbjct: 14 STAEIRQMFLDFFDSKGHRIVASSSLVPHNDPTLLFTNAGMNQFKNVFLGLEQSDSVRAT 73 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + Q+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F L Sbjct: 74 SSQRCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIHFAWELLTSEQWFHL 133 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L+ITVY DEE +++W G+ A++IIRI N DNFW M +TGPCGPC+ Sbjct: 134 PKDKLWITVYQTDEETYRIWADEVGIPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPCT 193 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ + GG PGS EEG+RYIEIWN+VFMQF +Q LP+ S+DTGMGLER Sbjct: 194 EIFYDHGDHLWGGPPGSPEEEGDRYIEIWNIVFMQFNRQLDGTMLALPQPSVDTGMGLER 253 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ+ +NY+IDLF+ LI+A ++T + N + RVI DH+RS +FLIADG++P Sbjct: 254 IAAVLQQVNSNYEIDLFRDLIKAIAEITAVSDLSNQSL--RVIADHIRSCAFLIADGVMP 311 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG L+ L + MGSA L Q + LIE+ L+ Sbjct: 312 SNENRGYVLRRIIRRAIRHGHMLGIKRVFFYKLVAPLISVMGSAAEALKQQQSLIEQWLK 371 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS + D L G+ AF LYDT+G PLD+ D+ R L Sbjct: 372 TEEEQFTRTLERGLALLDEELSKITGD-TLAGETAFSLYDTYGFPLDLTADVCRERHLK- 429 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+ QR RAR S + +L + G ++F GY + Sbjct: 430 VDEAGFERAMAAQRLRAR------DSNVFATDYNNLIKVEGKSEFSGY-----------E 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE------AVSGQKVEVVFDQTPFYAEAGG 526 + L Q+ +++ A++ G+ V+E A +++ V+ D+TPFYAE+GG Sbjct: 473 HQHLQQQ----------ALIIALIHNGKAVDEIHFSDKAAPDEEILVILDKTPFYAESGG 522 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD+G + D + D QK I H + G LR S+ +D + R ++ +N Sbjct: 523 QVGDSGKLVNDSAHFTVRDTQKHGATI-AHVGQLTTGCLRIGESINAAVDAERRHRIRLN 581 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL LG HV+Q GS + LRFD +HS+ +T A+++ +E+ VN I N Sbjct: 582 HSATHLLHAALRQTLGQHVAQKGSLVNDHYLRFDFSHSQAMTKAQIQQVENQVNAEIRAN 641 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 LP+ T+IM E+A +GA A G KY+D+VRV+++ G S LCGGTH + TG+I Sbjct: 642 LPIETKIMALEEAKKTGAMAFFGEKYSDKVRVLTI-----GTFSIELCGGTHTNRTGDIG 696 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L I +ES+ AGIRRIEA+TG+ A + L + L ++ LK N++ ++ +I E Sbjct: 697 LFRITAESATAAGIRRIEAVTGEAAMTLLHQESHLLHKISYQLKGDSSNLLDKISKIQEH 756 Query: 767 YRKLQ------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + L+ ++ +++ D S +I + + + + LK+++D+L++++ Sbjct: 757 NKNLEQELQQLKAQQAKQKSISLSD-SAQQIKGGKLLVKQVDNIAPEMLKTLIDSLKQEL 815 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGG 879 +S II+L ++ K +V++ VT++L D+ A +L A L+ +V GG GGGR MA GG Sbjct: 816 KSAIIVL-ATKQDNKVNVIVGVTKNLTDKIKAGELVADLAKQV--GGKGGGRAEMAMGGG 872 Query: 880 PNGNKADQAIAGVASFL 896 N A+A V +++ Sbjct: 873 TNVATLPAALASVRAWV 889 >gi|167855110|ref|ZP_02477882.1| alanyl-tRNA synthetase [Haemophilus parasuis 29755] gi|167853745|gb|EDS24987.1| alanyl-tRNA synthetase [Haemophilus parasuis 29755] Length = 853 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/882 (42%), Positives = 542/882 (61%), Gaps = 55/882 (6%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 +PSSSL+P NDPTL+FTN+GM FK++F G +K Y T+ Q+CVRAGGKHNDL+NVG Sbjct: 1 MPSSSLVPENDPTLLFTNAGMNQFKDVFLGLDKRSYNRATSSQRCVRAGGKHNDLENVGY 60 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLW 140 T RHHTFFEMLGNFSFG YFK AI AW+ LT + L + +L++TVY+ D+EA+ +W Sbjct: 61 TARHHTFFEMLGNFSFGDYFKPDAIAFAWEFLTSPQWLALPKEKLWVTVYETDDEAYDIW 120 Query: 141 KKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE 193 + G+ A++I+RI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS+EE Sbjct: 121 NREIGVPAERIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSAEE 180 Query: 194 -GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252 G+R+IE+WN+VFMQF +Q LPK S+DTGMGLER++ VLQ +NY+ID+F+ L Sbjct: 181 DGDRFIEVWNVVFMQFNRQADGTLKKLPKPSVDTGMGLERISAVLQHVNSNYEIDIFQAL 240 Query: 253 IQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA 312 I+ + + N + RVI DH+RS ++LIADG++P+NEGRGYVLRRI+RRA+ + Sbjct: 241 IKEIASLLNVTDLDNKSL--RVIADHIRSCAYLIADGVMPSNEGRGYVLRRIIRRAVRHG 298 Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372 +LG L+P L MG A L Q + I++ L++E+++F +TL+RGL LL+ Sbjct: 299 NILGAKSAFFYQLVPTLAKAMGQAGEILTQKQAHIQKALKAEEDQFARTLERGLALLEDA 358 Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432 L+ + ++++L+G+VAFKLYDT+G PLD+ D+ RG+ ID SF + ++ QR+RA+A Sbjct: 359 LAKV-ENKVLSGEVAFKLYDTYGFPLDLTADVCRERGIT-IDEASFEREMQAQRARAQAS 416 Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492 S GT + G+T+F GY++ C+ + V Sbjct: 417 S---NFGTDYNYVIKVD---GSTEFKGYEVTE------------CE-----------ATV 447 Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552 A+ G+ VE SG+ VV D+T FY E+GGQ+GD+G + ++ D QK + Sbjct: 448 VALFSNGKAVEAIQSGENAVVVLDRTAFYGESGGQVGDSGVIASEICNFEVNDTQKYGQ- 506 Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612 +F H + G L + ++ R +++NHSATHLLH AL +LG HV+Q GS + Sbjct: 507 VFGHIGQLASGTLSVGDKVKAEVNTTRRHAITLNHSATHLLHSALRQVLGDHVAQKGSLV 566 Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672 + + LRFD + + I+ A+L+ IE +N I +N+ V T +M+ E A GA AL G KY Sbjct: 567 SENSLRFDFSQGEAISKADLEEIERIINTKIRENIVVTTEVMDLESAKQKGAMALFGEKY 626 Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 DRVRVV + S LCGGTHV TGEI L +VSE ++ AG+RRIEA+TG+ A Sbjct: 627 GDRVRVVDIT----AAFSVELCGGTHVKQTGEIGLFKVVSEGAVAAGVRRIEAVTGENAI 682 Query: 733 SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK----LQLIHAKRKLQLNVE-DLS 787 L Q + L A LK ++V +++++ E+ +K LQ + K Q E Sbjct: 683 GLLHQQQQILNQSAELLKADTASLVEKIQQLQEKSKKVEKELQQLKDKLAAQAGGELAKQ 742 Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847 +I VN + + VD+K L++++D L+ ++ S +I+ + E K ++++ VT+DL Sbjct: 743 AQQINGVNVVVQRLENVDAKALRTMVDDLKNQLGSAVIVFATQTDE-KVNLIVGVTKDLT 801 Query: 848 DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 D+ NA +L L A+ + GG GGGR MA +GG QA+ Sbjct: 802 DKVNAGELVGLMAQEV-GGKGGGRADMAMAGGSQPENITQAL 842 >gi|108763083|ref|YP_633939.1| alanyl-tRNA synthetase [Myxococcus xanthus DK 1622] gi|122387764|sp|Q1D084|SYA_MYXXD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|108466963|gb|ABF92148.1| alanyl-tRNA synthetase [Myxococcus xanthus DK 1622] Length = 898 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/922 (42%), Positives = 562/922 (60%), Gaps = 61/922 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL+FF++ GH + SSSL+P NDPTLMFTN+GMV FK++FTG+E Y+ T Sbjct: 6 TASEIREAFLKFFEERGHRRVASSSLVPANDPTLMFTNAGMVQFKDVFTGRETRDYRRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI W+ +T+ L Sbjct: 66 TSQKCVRAGGKHNDLDNVGFTARHHTFFEMLGNFSFGDYFKADAIAYGWEFVTRTLGLST 125 Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL +TV++ DEEA++LWKK G+ A+++ ++ DNFW+M +TGPCGPCSEI Sbjct: 126 DRLAVTVFNGEGGTPWDEEAYELWKK-QGVPAERLYKLGLKDNFWAMGDTGPCGPCSEIH 184 Query: 177 FDQGECIP-------GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228 + QG+ IP G + + +R++EIWNLVFMQFE++ K I LPK SIDTG Sbjct: 185 YHQGDDIPCVEEAEGKKCQGVACDCDRWLEIWNLVFMQFERKEKDGPLIPLPKPSIDTGA 244 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+A+V+Q K +NY+ DLF++++ ++ G Y + + RV+ DH R+++FLI+D Sbjct: 245 GLERIASVVQGKRSNYETDLFQNILATVSELCGKPYSQESGASQRVVADHSRAAAFLISD 304 Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 G+ P+NEGRGYVLRRIMRRA+ + + LG + ++ + MG AYPEL +++ + Sbjct: 305 GVQPSNEGRGYVLRRIMRRAIRHGTQQLGLEDVFFFKVVDRVIELMGDAYPELRESRTFV 364 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDIL 405 E R E+ F +TL RGL L++ LS L K + L+GDV F L+ T+G P D+ Q I Sbjct: 365 LEVCRHEETSFRQTLSRGLKLIEEELSELQKAGGKQLSGDVVFLLHGTYGFPWDLTQIIA 424 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RGL +D++ F + L+E+ + + G G T +++ L E+ G T+F+GY+ Sbjct: 425 RERGL-DVDLVRFEERLKEEADKNK--FAGSGDKATGEVYLKLAERLGTTEFLGYEGEGH 481 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++AIV+ G V +A G VE+V D+TPFY E+G Sbjct: 482 EGEGS---------------------IRAIVKDGAEVTQATQGDTVELVLDRTPFYGESG 520 Query: 526 GQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GQ+GDTG +G G + ++TD Q+ G+ VH V G + + +D + R+ + Sbjct: 521 GQMGDTGRIVGHGGKAVAKVTDAQRPVPGLVVHSVEVSEGTFKVGDMVQAGVDSERRKSI 580 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG HV Q GS + PD LRFD H P TSA+L+ +ED VN I Sbjct: 581 RANHSATHLLHKALKLVLGEHVKQAGSVVAPDYLRFDFAHFSPATSAQLEQVEDLVNGWI 640 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N TR+M+ EDA SGA A+ G KY + VRVV+V E S+ LCGGTHV +G Sbjct: 641 RDNAGAETRVMSLEDAKKSGAVAMFGEKYGETVRVVTVHPE-----STELCGGTHVRRSG 695 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-- 761 +I L I SES + +G+RRI A+TG A H+ Q+ +L+ +A LK + V RVE Sbjct: 696 DIGLFKIASESGVASGVRRIVALTGIGALQHVREQEHELRKVAELLKSNPKEVSKRVEAT 755 Query: 762 --EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDAL 816 + E RK++ + K + + +DL + DVN M + ++VD+ + L+ + D L Sbjct: 756 QKRVKELERKVEEVAVKAQTA-SSKDL-LEQARDVNGMKVLATQVDAADDNVLRGMADQL 813 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 + +I+SG++ +G K+ +A +L+ T+D++ + NA L R AK + GG GGG+ MA Sbjct: 814 RDRIRSGVVA-IGGEKDGRAIILVAATKDVVAKGINAGALVREMAKEV-GGKGGGKAEMA 871 Query: 876 QSGGPNGNKADQAIAGVASFLK 897 Q+GGP+ +K A+ + +K Sbjct: 872 QAGGPDASKLPAALEKLYELVK 893 >gi|194365256|ref|YP_002027866.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3] gi|194348060|gb|ACF51183.1| alanyl-tRNA synthetase [Stenotrophomonas maltophilia R551-3] Length = 882 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/893 (44%), Positives = 550/893 (61%), Gaps = 49/893 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ LW+ + G+ ++I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGIPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI+ + ++TG N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTADLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P L+P L +MG AYPEL A + L++E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAADTVTRALQAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + ++ G AF+LYDT+G PLD+ QDI R L +D Sbjct: 366 EERFAETLDAGMKIFEDVAGK-ASNGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 I F+ A+E+QR ARA G G T + L T+F+GYD L+ Sbjct: 424 IAGFDAAMEQQRETARAAG-KFGGGVT--LPAELVATLSPTRFLGYDRLQ---------- 470 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +G++ V A+++ G V+ A +G V V+ +QTPFYAE+GGQ+GDTG Sbjct: 471 ----------ADGLT--VLAVLKDGRPVQSANAGDAVIVITNQTPFYAESGGQVGDTGVL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+G+RL + D QK A H I+ G L+ L +D + R +NHSATHLLH Sbjct: 519 TGNGVRLAVEDTQKFAGQFHGHVGILSEGGLKVGDVLSGQVDGERRGATILNHSATHLLH 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PI++ EL IE VN + N M Sbjct: 579 AALREVLGTHVQQKGSMVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHNM 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 639 GMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+TGQ A ++ ++ +L A L S +VV ++ + + ++L +L Sbjct: 694 GVSAGVRRIEAVTGQGALDYVDAEEARLAEAADLLGGSAADVVEKIRALGQRQKQLEREL 753 Query: 773 IHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K+ DLS ++A V ++ + D+K L+ MD L++++ +I+L G Sbjct: 754 ESVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAVIVLAG 813 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++ KA+++ V + + A +L A + GG GGGRP +AQ GG +G Sbjct: 814 -AQDGKAALVAGVNGSAMGKVKAGELLSHIAGQI-GGKGGGRPDLAQGGGEDG 864 >gi|241662427|ref|YP_002980787.1| alanyl-tRNA synthetase [Ralstonia pickettii 12D] gi|240864454|gb|ACS62115.1| alanyl-tRNA synthetase [Ralstonia pickettii 12D] Length = 893 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/917 (41%), Positives = 545/917 (59%), Gaps = 61/917 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 15 KASDIRQKFLTFFEGKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGTDKRPYVRAA 74 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 75 SVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPA 134 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSEI Sbjct: 135 EKLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEI 194 Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMG 229 F+D G + GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGMG Sbjct: 195 FYDHGPDVWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMG 254 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289 +ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI DG Sbjct: 255 MERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDG 312 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 ++P NEGRGYVLRRI+RRA+ + LG L+ L +MG AYPEL +A+ + E Sbjct: 313 VIPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVAQMGEAYPELREARDRVVE 372 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407 LR+E+ RF +T++ G+ +LD L L ++L+G++AFKL+DT+G PLD+ QD+ C Sbjct: 373 VLRTEEARFFETIEHGMSILDAALGELKTSGAKMLDGELAFKLHDTYGFPLDLTQDV-CR 431 Query: 408 RGLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D +F+ A+ QR +ARA + +GT L T F GY+ L Sbjct: 432 ENDVIVDEAAFDAAMTRQREQARAAGKFKMAAGT-------LDYTGDKTTFHGYEQL--- 481 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++E ++ V A+ G V+E GQ VV D TPFYAE+GG Sbjct: 482 --VRE-----------------TARVTALFVDGASVQEMHPGQTGVVVLDHTPFYAESGG 522 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + + D K +F HH + G+L+ ++ +D R + N Sbjct: 523 QVGDQGTLKAATVWFDVVDTLKLQPDVFGHHGELRTGVLKVGDAVAAEVDAVRRARTMRN 582 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LGSHV Q GS + + RFD +H+ P+T +++ +E VN I N Sbjct: 583 HSATHLMHKALREVLGSHVQQKGSLVDAEKTRFDFSHNAPMTPLQIREVEARVNAEIFAN 642 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 ++M +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I Sbjct: 643 AATSAQLMGFDDAVKNGAMALFGEKYGDEVRVLSIG------SSKELCGGTHVARTGDIG 696 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L IVSES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 697 LFKIVSESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIVQVQDQ 756 Query: 767 YRKL--QLIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQ 821 + L +L K KL + D + DV ++ + D+K L+ MD L+ K+Q Sbjct: 757 VKTLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETMDKLKDKLQ 816 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + I+L G + K +++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 817 TAAIVL-GSVTDGKVALIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTE 874 Query: 882 GNKADQAIAGVASFLKK 898 + QA+AGVA+++++ Sbjct: 875 PDNLPQALAGVAAWVQQ 891 >gi|326339235|gb|EGD63050.1| Alanyl-tRNA synthetase [Escherichia coli O157:H7 str. 1044] Length = 833 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/854 (44%), Positives = 532/854 (62%), Gaps = 56/854 (6%) Query: 43 MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102 M FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF Sbjct: 1 MNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60 Query: 103 KERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157 K AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ ++IIRI N Sbjct: 61 KHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGA 120 Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQN 212 DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q Sbjct: 121 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQA 180 Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272 LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG N + Sbjct: 181 DGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL-- 238 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E L+ L Sbjct: 239 RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDV 298 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYD Sbjct: 299 MGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYD 357 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+D+ D+ R + +D F A+EEQR RAR S G G+ I Sbjct: 358 TYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD----- 410 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 A++F GYD L ++ V A+ G+ V+ +GQ+ Sbjct: 411 SASEFKGYDHLE-----------------------LNGKVTALFVDGKAVDAINAGQEAV 447 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 VV DQTPFYAE+GGQ+GD G G + D QK + I H + G L+ ++ Sbjct: 448 VVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLAAGSLKVGDAVQ 506 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD +H++ + E+ Sbjct: 507 ADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEI 566 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 +++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ G S+ Sbjct: 567 RAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM-----GDFSTE 621 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++L +A LK Sbjct: 622 LCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGD 681 Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISE---VDSK 807 N+ +V + E R+L+ + K Q ++ + K DVN + ++SE V+ K Sbjct: 682 SNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPK 741 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867 L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L + A+ + GG Sbjct: 742 MLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELIGMVAQQV-GGK 799 Query: 868 GGGRPHMAQSGGPN 881 GGGRP MAQ+GG + Sbjct: 800 GGGRPDMAQAGGTD 813 >gi|330953630|gb|EGH53890.1| alanyl-tRNA synthetase [Pseudomonas syringae Cit 7] Length = 874 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGRS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDVTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I + +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|22096207|sp|Q9PH22|SYA_XYLFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 884 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/910 (41%), Positives = 556/910 (61%), Gaps = 50/910 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK V Sbjct: 8 TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT ++L Sbjct: 68 DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+E++ LW+ + G+ D+I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE IPGG PGS E+G+R+IEIWNLVFMQF++Q+ LP +DTGMGLER+A Sbjct: 188 FYDHGEHIPGGPPGSPDEDGDRFIEIWNLVFMQFDRQSDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + ++T + N + RVI DH R+ +FLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNKSL--RVIADHSRACAFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P +++P L MG AYP+L A + TL +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + + + ++ G AF+LYDT+G P+D+ DI RG++ +D Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMS-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 ++ F A+ +QR ARA G G ++ T F+GY+ L+ Sbjct: 424 MVGFEAAMTQQRKTARAAG-KFGRGV--QLSAERAAMLSPTVFLGYEQLQADGLR----- 475 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A++ G + + A G +V V+ D+TPFYAE+GGQ+GD G Sbjct: 476 -----------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518 Query: 535 IG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + DG+RL++TD QK H A + +G ++ L ++ R+ +++NHSATHLL Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++ G+HV Q GS + PD LRFD +H +PI +A++ IE VND + N V+ Sbjct: 579 HCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPIAAAQMTLIERMVNDEVRANHLVMIEQ 638 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M + A+ +GA AL G KY + VRVV++ S LCGGTH++ TG+I L I+SE Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVTMGT------SVELCGGTHINRTGDIGLFKIISE 692 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + +G+RRIEA+TG+ A +H++ ++ +L +A + + +VV + ++ + + L+ Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 752 Query: 774 HAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K K +L + DL + +ADV ++ + +D K L+ +D L+ ++ +I+L Sbjct: 753 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G++ K A V V + + A L A + G GGGR AQ GG +G A Sbjct: 813 GVTGGKVALVTAVNGRRAMGKVKADTLLSHVATQI-NGRGGGRVDFAQGGGEDGPSLRSA 871 Query: 889 IAGVASFLKK 898 + GVA+++K+ Sbjct: 872 LDGVATWVKQ 881 >gi|15836729|ref|NP_297417.1| alanyl-tRNA synthetase [Xylella fastidiosa 9a5c] gi|9104908|gb|AAF82937.1|AE003866_2 alanyl-tRNA synthetase [Xylella fastidiosa 9a5c] Length = 916 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/908 (41%), Positives = 556/908 (61%), Gaps = 50/908 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ FLEFF+ GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK V V Sbjct: 42 SKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVADV 101 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT ++L R Sbjct: 102 QCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPPER 161 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +TVY D+E++ LW+ + G+ D+I+RI N DNFW MA+TGPCGPC+EIF+ Sbjct: 162 LLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEIFY 221 Query: 178 DQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D GE IPGG PGS E+G+R+IEIWNLVFMQF++Q+ LP +DTGMGLER+A + Sbjct: 222 DHGEHIPGGPPGSPDEDGDRFIEIWNLVFMQFDRQSDGTLVPLPAPCVDTGMGLERLAAI 281 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ NY+IDLF+ LI + ++T + N + RVI DH R+ +FLI DG+LP+NEG Sbjct: 282 LQHVHTNYEIDLFQTLILKAAELTAVADVQNKSL--RVIADHSRACAFLIVDGVLPSNEG 339 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + +LG +P +++P L MG AYP+L A + TL +E+E Sbjct: 340 RGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAEEE 399 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF +TLD G+ + + V + + + ++ G AF+LYDT+G P+D+ DI RG++ +D++ Sbjct: 400 RFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMS-VDMV 457 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+ +QR ARA G G ++ T F+GY+ L+ Sbjct: 458 GFEAAMTQQRKTARAAG-KFGRGV--QLSAERAAMLSPTVFLGYEQLQADGLR------- 507 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V A++ G + + A G +V V+ D+TPFYAE+GGQ+GD G + Sbjct: 508 ---------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTLMA 552 Query: 537 -DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 DG+RL++TD QK H A + +G ++ L ++ R+ +++NHSATHLLH Sbjct: 553 SDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLLHC 612 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++ G+HV Q GS + PD LRFD +H +PI +A++ IE VND + N V+ M Sbjct: 613 ALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPIAAAQMTLIERMVNDEVRANHLVMIEQMG 672 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A+ +GA AL G KY + VRVV++ S LCGGTH++ TG+I L I+SE Sbjct: 673 MQAALDAGAMALFGEKYGEHVRVVTMGT------SVELCGGTHINRTGDIGLFKIISECG 726 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + +G+RRIEA+TG+ A +H++ ++ +L +A + + +VV + ++ + + L+ Sbjct: 727 VSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERELE 786 Query: 776 KRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K +L + DL + +ADV ++ + +D K L+ +D L+ ++ +I+L G+ Sbjct: 787 KLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLAGV 846 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K A V V + + A L A + G GGGR AQ GG +G A+ Sbjct: 847 TGGKVALVTAVNGRRAMGKVKADTLLSHVATQI-NGRGGGRVDFAQGGGEDGPSLRSALD 905 Query: 891 GVASFLKK 898 GVA+++K+ Sbjct: 906 GVATWVKQ 913 >gi|167627901|ref|YP_001678401.1| alanyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|205830099|sp|B0TZY8|SYA_FRAP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167597902|gb|ABZ87900.1| Alanine--tRNA ligase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 865 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/894 (43%), Positives = 537/894 (60%), Gaps = 45/894 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MISTKELRNKFISYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGLEKRDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W GL ++IIRI +NDNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYATDDEAFDVWHNHIGLPKERIIRIDSNDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+G+RYIEIWN+VFMQF + LPK S+DTGMGLER+A VLQ+ Sbjct: 181 EDVAGGLPGTPDEDGDRYIEIWNIVFMQFNRHADGTVTDLPKPSVDTGMGLERIAAVLQD 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI+ +++VT + N + +V+ DH+RS +FLIADG+LP+NEGRGY Sbjct: 241 VHSNYDIDLFQALIKKAQEVTNA--DDINSPSLKVVADHIRSCAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG + L+ L +MG AYP+LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKLGAKDIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + L K +I++G++AF+LYDT+G PLD+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDTEIVSL-KSDIISGEIAFRLYDTYGFPLDLTADMAREKGLK-VDEEAFK 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + + +Q+ R++ +G + S+ + F GY L ED KVL Sbjct: 417 EQMLKQKQRSKE------AGKFNVDYNSIINSQAKSDFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G+ V +G +V D+TPFYAE+GGQ+GD G G G+ Sbjct: 462 --------------EIYQDGQPVNAIQAGSTAVIVLDRTPFYAESGGQVGDKGVLEGVGV 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +GIL T + ++ R + NHSATHLLH L Sbjct: 508 EFIVEDVQKSGEAI-LHIGKLSKGILNTYDEVTARVNDSVRLATAANHSATHLLHKVLKI 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSH Q GS + + LRFD TH K I+ E++ IE VN I N PV T ++E A Sbjct: 567 ILGSHAEQKGSLVDDNKLRFDFTHDKAISRVEIEQIETLVNQQIRANYPVATIETSQEKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L IVSES I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIVSESGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK- 778 IRRIEAIT +A + + KL ++ K + N++ +++ + E+ + + AK K Sbjct: 682 IRRIEAITANKAIKYTFATENKLAAIKEITKSNDSNLLDKLQSMLEQLKNQEKEIAKLKK 741 Query: 779 --LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 L D+ I + + + VD K L+ +D + K + +L I+ + K Sbjct: 742 DILSGANSDIKESSIDGIKLIIANLEGVDIKTLREKIDDYKSKNDKMVAVLSTINAD-KV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 +I V++ + A D+A+ + + G GGGRP MAQ GG N D+A++ Sbjct: 801 QFVIGVSKSITSLIKAGDIAKEFSGYI-DGKGGGRPDMAQGGGNNSTNIDKALS 853 >gi|224369825|ref|YP_002603989.1| alanyl-tRNA synthetase [Desulfobacterium autotrophicum HRM2] gi|223692542|gb|ACN15825.1| AlaS1 [Desulfobacterium autotrophicum HRM2] Length = 872 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/897 (42%), Positives = 552/897 (61%), Gaps = 47/897 (5%) Query: 8 RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKC 67 R F+E+F+K+ H + SSSL+P +DPTL+FTN+GMV FK +FTG EK Y T QKC Sbjct: 7 RRLFIEYFEKHHHHHVRSSSLVPSDDPTLLFTNAGMVQFKRVFTGDEKRDYSLAVTSQKC 66 Query: 68 VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYI 127 VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK++AI+ AWDLLT + D +L++ Sbjct: 67 VRAGGKHNDLENVGYTARHHTFFEMLGNFSFGQYFKDKAIEFAWDLLTNGYGFDPEKLWV 126 Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187 +VY +D+EA+ +W+ G+ +I+R+ DNFWSM +TGPCGPCSEI D+GE G Sbjct: 127 SVYLDDDEAYNIWRDKIGVPESRIVRLGEKDNFWSMGDTGPCGPCSEIHIDRGEKYGCGS 186 Query: 188 PGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 P + E +RY+E+WNLVFMQF++ + LPK SIDTG+GLER+ +VLQ+ NY+ Sbjct: 187 PDCAVGCECDRYLELWNLVFMQFDRDATGKMTPLPKPSIDTGLGLERVISVLQDVPTNYE 246 Query: 246 IDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DLF +++ E ++G+K + + N V +VI DH R+++FLI DGILP+NEGRGYVLRR Sbjct: 247 TDLFLPIMERVEVLSGLKKDASRENSVAMKVIADHSRAAAFLICDGILPSNEGRGYVLRR 306 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 IMRRA+ Y R LG P + + + M AYPEL ++ I +++E+ +F +TLD Sbjct: 307 IMRRAIRYGRNLGLVRPFLHETVQQVFEIMEQAYPELKESSAFILNVVKNEEAKFSETLD 366 Query: 364 RGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 GL LL+ + G +I GDV FKLYDT G P+DI+ D++ R + +D+ +N+ Sbjct: 367 VGLRLLNETIEKTEASGAKQIA-GDVIFKLYDTFGFPVDIINDVVADRAIT-LDMDGYNR 424 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+++QR+R+++ + G G K S K T+F GY L Sbjct: 425 AMDDQRARSKSSKIFAGVGEAYKTLTSQGVK---TEFTGYTDLE---------------- 465 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 +S V IV+ V A G ++E+V TPFYAE+GGQ GD+G G Sbjct: 466 -------TTSEVLLIVKNDVAVTTAGQGDQIEIVTRATPFYAESGGQAGDSGVIKTKGCT 518 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + + + G+ +HH V G L+T+ ++++ +D + R ++NH+ATHLLH AL + Sbjct: 519 VAVDNTLADPSGLRIHHGKVVSGALQTKANVLMVVDQEQRAATAMNHTATHLLHAALRKV 578 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q+GS +T D LRFD TH IT E++++E VN I +N+PV T M+ ++A+ Sbjct: 579 LGDHVKQSGSLVTKDRLRFDFTHFAAITRQEIEAVESEVNLRIRENVPVATIEMDMDEAV 638 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA AL KY DRVRVVS+ S LCGGTH +G I L IVSE I +GI Sbjct: 639 KSGATALFEEKYGDRVRVVSM-----AGFSKELCGGTHTDRSGNIGLFQIVSEGGIASGI 693 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778 RRIEA+TG RA ++ G + + LK ++G VV +V+ + + + +++ K K Sbjct: 694 RRIEALTGARALDYVHGITADILETSRVLKSARGEVVEKVKTLVADKKAADKEIVSLKAK 753 Query: 779 L-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + +VE++ +I V +S ++ + +L+ + D + KI SG+++L G K Sbjct: 754 IASKSVENMDDDIREIDGVRIVSKLVQIDNPSQLRDLADKFKAKIGSGVVLL-GAESNGK 812 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 A ++ VV++DL RF A + + +A ++ GGGGGGRP MAQ+GG ++A+A V Sbjct: 813 ALLVSVVSDDLTKRFKAGAIVKKAAAIV-GGGGGGRPDMAQAGGSKPEFLERALASV 868 >gi|226945497|ref|YP_002800570.1| alanyl-tRNA synthetase [Azotobacter vinelandii DJ] gi|226720424|gb|ACO79595.1| alanyl-tRNA synthetase [Azotobacter vinelandii DJ] Length = 874 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/913 (44%), Positives = 550/913 (60%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y TT Sbjct: 4 AEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K L Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWEFLTSPKWLKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W + G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYASDDEAYDIWTRTVGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS+EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGPEIWGGPPGSAEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L+ AS Q G +G + +V+ DH+RS SFLIADG+ P+N Sbjct: 244 AVLQHVHSNYEIDLFQNLLAASAQAIGCANDGAPSL--KVVADHIRSCSFLIADGVTPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG AYPEL Q + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGARGTFFHKIVGALAAEMGDAYPELRQQRAQIERVLKNE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L +++ GDV FKLYDT+G P D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLKILEQDLAGLAA-KVIPGDVVFKLYDTYGFPADLTADIARERDLT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + GL + SL + T F GY Sbjct: 420 EEGFEREMQAQRERARSASAFGLD-------YNSLVKVDADTLFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG- 532 + T G +V A+ + G VE G++ VV D+TPFYAE+GGQ+GD G Sbjct: 460 ---------EETFGQGQVV-ALFKGGATVERLGEGEEGVVVLDRTPFYAESGGQVGDCGY 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + G+R + D K G +HH +V +G L +L +D R ++NHSATHL Sbjct: 510 LSDASGVRFDVRDTTKVG-GAHLHHGVVAKGGLHVGQALEAQVDGSVRGATALNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + LRFD +H + +T+ ++K++E VN I +N V T Sbjct: 569 LHAALRRVLGEHVQQKGSLVNSQRLRFDFSHFEALTTEQIKALEALVNTEIRKNTAVETE 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +++ + A GA AL G KY D VRV+S+ G S LCGG H TG+I L IV Sbjct: 629 VIDIDSAKKKGAMALFGEKYGDNVRVLSM-----GDFSIELCGGIHARRTGDIGLFKIVG 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AG+RRIEA+TG A +L +E+LK +A LK S+ N++ ++ + E R+L Sbjct: 684 EGGVAAGVRRIEAVTGAGALDYLNAAEEQLKEVAGLLKGSRDNLLDKLAGLLERNRQLEK 743 Query: 771 QLIHAKRKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K K +DL S ++A V +S + +D K L +++D L+ K+ S +I+L Sbjct: 744 ELEQLKAKAASAAGDDLAGSAIEVAGVKVLSARLDGLDGKALLALVDQLKNKLGSAVILL 803 Query: 828 VGISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 G E V++V VT+D++ + A DL + A + GG GGGRP MAQ GG K Sbjct: 804 GG---EFDGKVVLVAGVTQDMIGKLKAGDLMK-QAAAVVGGKGGGRPDMAQGGGSEAGKL 859 Query: 886 DQAIAGVASFLKK 898 D+A+A V F+++ Sbjct: 860 DEALALVRPFVER 872 >gi|218710534|ref|YP_002418155.1| alanyl-tRNa synthetase [Vibrio splendidus LGP32] gi|218323553|emb|CAV19764.1| Alanyl-tRNA synthetase [Vibrio splendidus LGP32] Length = 860 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/916 (41%), Positives = 542/916 (59%), Gaps = 81/916 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ H+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKEHQIVDSSSLVPHNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L + Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEEAIGFAWEFLTETLGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRIT--------TNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF++W K G+ ADKI+RI +DNFW+M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFEIWNKKVGIPADKIVRIGDKEGGKKFESDNFWTMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK ++DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPAVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G N + RVI DH+RS SFLIADG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQKLIKATAEVVGHDDLSNQSL--RVIADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + +G L+ L MGSA EL + + L+E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKIGAQGVFFHKLVGVLAEVMGSAAEELKKQQELVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+V+L+ L L E L+G+ FKLYDT+G P D+ D+ R I Sbjct: 362 EEENFGRTLERGMVILNDALDALEGKE-LDGETVFKLYDTYGFPADLTNDVARERDFT-I 419 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F +A+E QR RAR A G T K+ + T+F GY G Sbjct: 420 DEAGFEKAMEAQRKRAREAGQFGTDYNATIKVDTN-------TEFCGYTGTEG------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + A+ GE V +G K ++ ++TPFYAE+GGQ GD G Sbjct: 466 ----------------AGEISALFVDGEEVSSLSAGDKAIIILEETPFYAESGGQCGDAG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D QK F HH + G+ + +D + R +S+NHSATHL Sbjct: 510 TLSTASGLFKVQDTQKLGNA-FSHHGELVEGVFAQGDKVEARVDAERRAAISLNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD ++ + +T A++K +E VN + +N + T Sbjct: 569 LHSALREVLGEHVAQKGSLVKPDNLRFDFSNLEAVTPAQIKEVERLVNAQVRKNHVIETN 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I S Sbjct: 629 IMDIESAKEKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 E I AG+RRIEA+TG+ A + Q +EKL A K + + Sbjct: 684 EGGIAAGVRRIEAVTGEAALDAVEAQANAYEEKLAESAKKAKSLE--------------K 729 Query: 769 KLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++QL+ K + VE++S K+ + I D+K L++++D + ++ S Sbjct: 730 EIQLLKEKMAAAEGANIMGKVEEISGTKV-----LVAAIEGADNKNLRTMVDNAKNQVGS 784 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 GII++ ++ + K ++ VT+DL+ + A DL ++ A+ + GG GGGRP MAQ+GG + Sbjct: 785 GIILIANVA-DGKVGLIAGVTKDLIGKVKAGDLVKMVAEQV-GGKGGGRPDMAQAGGTDV 842 Query: 883 NKADQAIAGVASFLKK 898 +A+ V +L++ Sbjct: 843 EALPEALKSVRIWLEE 858 >gi|262195176|ref|YP_003266385.1| alanyl-tRNA synthetase [Haliangium ochraceum DSM 14365] gi|262078523|gb|ACY14492.1| alanyl-tRNA synthetase [Haliangium ochraceum DSM 14365] Length = 890 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/920 (42%), Positives = 551/920 (59%), Gaps = 62/920 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R++FL+FF GHE + S+SL+P DPTL+FTN+GMVPFK++FTG + T Sbjct: 2 KAAQVRSSFLDFFAARGHERVHSASLVPVGDPTLLFTNAGMVPFKDVFTGHQTRAIPRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKCVRAGGKHNDLD VG+T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ + +D+ Sbjct: 62 SSQKCVRAGGKHNDLDQVGKTARHHTFFEMLGNFSFGDYFKKDAIAWAWELLTEVYGIDK 121 Query: 123 RRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 RL ITV+ D+EA +W +++G+ +++II + ++NFW M ETGP GPCSE Sbjct: 122 ERLVITVFAGDSELGVGADDEARAIWGEVTGMPSERIIGLGKSENFWMMGETGPMGPCSE 181 Query: 175 I-FFDQGECIPGGLPGSSEEG---ERYIEIWNLVFMQFEQQNKQERF-ILPKMSIDTGMG 229 I +F G+ P LPG+ + ++EIWNLVFMQ+E++ LP SIDTG G Sbjct: 182 IHYFGAGK--PDALPGTDPDAPVWSGWLEIWNLVFMQYERREPGGALHKLPAPSIDTGAG 239 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 LER+ +VLQ ++NYD DLF+ L+ ++ ++ G +Y +G+ + RVI DH R+++FL+A Sbjct: 240 LERVTSVLQGVSSNYDTDLFQPLLHSAAELCGKRYGEDGDADTSMRVIADHARATAFLVA 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P + YVLRRI RRA+ + +LLG EP M + + EM AYPEL + +I Sbjct: 300 DGVFPDKTDKEYVLRRIFRRAVRHGKLLGIEEPFMHRMCARVVEEMKDAYPELAERATVI 359 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E E++RF TLDRGL LL+ + K ++GD F+LYDT+G P D+ + I Sbjct: 360 HEITLEEEKRFRATLDRGLNLLEEEFGRMQAAKSSTVSGDKVFQLYDTYGFPSDLTEIIA 419 Query: 406 CARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 G GID F + LE+ R R++ AHS G+G G +++ +L + GAT F+GY+ Sbjct: 420 DEHGY-GIDHEGFREELEQARERSKAAHSTGVGEG---EVFKTLAGELGATSFLGYE--- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSI--VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 G+S V A+V GE VE A +G +V DQTPFYA Sbjct: 473 --------------------GEGLSGSGQVMALVVDGERVERAEAGAQVAFACDQTPFYA 512 Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E+GGQ+GD G A + G R++I D +K + FVH V G + L +D + R Sbjct: 513 ESGGQIGDCGEARSEAGARVRIDDTRKPSGDTFVHIGEVLEGAIALGDQLGFEVDGERRA 572 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NHSATHLLH AL LG HV+Q GS + PD LRFD H P++ + + +ED VN Sbjct: 573 RIRANHSATHLLHLALKKTLGDHVAQKGSSVGPDRLRFDFAHFSPMSDEQTQQVEDWVNA 632 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +N VT +M+ +A GA A+ G KY D+VRVV + G S CGGTHV Sbjct: 633 EIRKNRDSVTDVMSLSEAKERGAVAMFGEKYGDKVRVVGI-----GSESLEFCGGTHVHR 687 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 G+I L IVSESS+ G+RRIEA+TG A ++ + +L ++ LKV+ V GRV+ Sbjct: 688 AGDIGLFKIVSESSVAQGVRRIEAVTGAGALEYVRRVEGELSAVGGRLKVAPLEVAGRVD 747 Query: 762 EIWEEYRKLQLIHAKRKLQLNV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 ++ EE R + A+ K +L DL +IA V ++ D+K L++ D L Sbjct: 748 KLQEELRAREREVAELKAKLAAGGSRDLMSEVEEIAGVKVLAVATEVDDAKTLRTTGDTL 807 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + ++ SG+++L G+ E K ++L +V++DL R +A L + A+ L GG GGGRP MAQ Sbjct: 808 RDRLGSGVLLLCGVG-EDKVALLAMVSKDLTKRVHAGKLLQAVAETL-GGRGGGRPDMAQ 865 Query: 877 SGGPNGNKADQAIAGVASFL 896 GG + ++ A+ SFL Sbjct: 866 GGGKDPSQVPAALERARSFL 885 >gi|57238881|ref|YP_180017.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|58578810|ref|YP_197022.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|81557351|sp|Q5HC27|SYA_EHRRW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|57160960|emb|CAH57866.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] gi|58417436|emb|CAI26640.1| Alanyl-tRNA synthetase [Ehrlichia ruminantium str. Welgevonden] Length = 887 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/892 (42%), Positives = 537/892 (60%), Gaps = 55/892 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS +R F++FF KNGH+ PSS L+ +DP+L+FTN+GMV FK FT + + Sbjct: 7 VSDLRRLFIDFFVKNGHQFFPSSQLVIKDDPSLLFTNAGMVQFKQRFTSVDDRSINTAVS 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAWD +TKE LD++ Sbjct: 67 SQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKERAIELAWDFVTKELALDKK 126 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLYITVY +D++AF LWKKIS S DKII+I TNDNFWSM GPCGPCSEIF+D GE + Sbjct: 127 RLYITVYHDDQDAFNLWKKISSFSDDKIIKIKTNDNFWSMGNVGPCGPCSEIFYDYGESV 186 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GGLPG+ EE G R+ EIWNLVFM++ + + E +LP+ IDTGMGLER+A V+Q + Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMEYNRTEEGELSVLPRKCIDTGMGLERIAAVMQGVHD 246 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYDI+LFK LI S++ +G + + HRVI DH+RS++FLIA+G+ P NEGR Y+LR Sbjct: 247 NYDINLFKALIAMSKKESG---NSSCEIAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357 RI+RRA Y +L YT+ LM + P L E M YPEL +AK LI L++E+E Sbjct: 304 RIIRRAARYVYMLKYTDSLMYKIFPVLIDETSNAYMADYYPELFKAKDLIISILKTEEEN 363 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TL R L LL+ L++L ++L+GD+ F+LYDT+G P+DI DI+ RG+ D Sbjct: 364 FKDTLVRALPLLEKELTYLSTGDVLSGDIIFRLYDTYGFPVDITLDIIKERGIR-FDEKG 422 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F +E+Q++R+R +H + KIW +++ Y T+F+GYD + Sbjct: 423 FYDNMEQQKTRSRLSHLIKSTEQLNGKIWEDIRQNYNNTRFVGYDNFQVQ---------- 472 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533 S I+ ++ V A G KV ++ D TPFYAEAGGQ DTG Sbjct: 473 ------------SKILSMVMNNDRNVTVANVGDKVSILMDITPFYAEAGGQQADTGLLSV 520 Query: 534 -------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 G +T+ + +G+++H IV+ G L + I+ R+ L N Sbjct: 521 VRRDGKDLFGSSNIADVTNTKNIFDGLYIHECIVKSGSLIIGDIVSAEINSHRRKDLCAN 580 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH+ L + +++ Q GS + D LRFD +++ +T ++K IE+ + D+I QN Sbjct: 581 HSATHLLHYILRMEIDNNIMQKGSLVGNDKLRFDFSYNMALTEKQIKLIENRMCDLIRQN 640 Query: 647 LPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 PV T I N ++A+ +GA AL KY N VRVV++ +S LC GTHV TGEI Sbjct: 641 HPVETNICNLQNAMDNGAIALFTEKYDNHEVRVVNIG------NSKELCCGTHVKYTGEI 694 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 I+SESSI GIRRIEA+TGQ A + Q++ L +A +K +V+ ++++I Sbjct: 695 GCFKIISESSIACGIRRIEAVTGQYAIDYFRQQEKVLYQVAESVKSPVEDVLVQIDKINR 754 Query: 766 EYRKL-QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 E ++L Q + A ++++ ++ KI ++NF+ +S V + V + K++ + Sbjct: 755 ENQELKQKLWAAYFDIIDMQGVNIEKIGNINFLHGTLSSV---PIDVVRKFIMKRLVKDM 811 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 IML ++ V L + A D ++ V+ GGG +AQ Sbjct: 812 IMLFSNVVNHNKIYVVGVGNSLHSKVKAADFVKIIGCVVKSKGGGN-AQLAQ 862 >gi|66046785|ref|YP_236626.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. syringae B728a] gi|63257492|gb|AAY38588.1| Alanyl-tRNA synthetase, class IIc [Pseudomonas syringae pv. syringae B728a] Length = 899 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 29 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 88 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 89 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 148 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 149 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 208 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 209 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 268 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 269 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 326 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 327 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 386 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 387 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 444 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 445 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 484 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 485 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGF 534 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 535 LQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 593 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I + +L+++ED VN I +N V+T Sbjct: 594 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEE 653 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 654 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 709 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 710 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 769 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 770 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 828 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 829 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 886 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 887 ALALAVPFVEQ 897 >gi|83305856|sp|Q4ZQI4|SYA_PSEU2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I + +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKAEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|208779166|ref|ZP_03246512.1| alanyl-tRNA synthetase [Francisella novicida FTG] gi|208744966|gb|EDZ91264.1| alanyl-tRNA synthetase [Francisella novicida FTG] Length = 865 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/901 (43%), Positives = 539/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTNAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L +MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SE I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ L A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|271501699|ref|YP_003334725.1| alanyl-tRNA synthetase [Dickeya dadantii Ech586] gi|270345254|gb|ACZ78019.1| alanyl-tRNA synthetase [Dickeya dadantii Ech586] Length = 875 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/909 (43%), Positives = 551/909 (60%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQIVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYVRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWELLTSSQWFGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYASDDEAYDIWANEVGVPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWNLVFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQADGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NYDIDLFK LI + +V G N + RVI DH+RS +FLIADG++P Sbjct: 244 ISAVLQHVNSNYDIDLFKTLIAEAARVVGTDDLNNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG+A EL + + L+E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVGTLIEVMGAAGEELKRQQSLVEQALK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL+LLD + L K + L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 NEEEQFARTLERGLLLLDEEIKQL-KGDTLSGEAAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A+E QR RAR S G G+ + SL +T F GY Sbjct: 420 VDEAGFERAMEAQRQRARDAS-GFGAD-----YNSLIRVDASTSFCGY------------ 461 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + T S++V AI +QGE V+E +G V+ +TPFY E+GGQ+GD G Sbjct: 462 ----------ERTEQQSTVV-AIYRQGESVQEIQAGDDAVVILSETPFYGESGGQVGDQG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I H + +G+LR + +D+ R ++ +NHSATHL Sbjct: 511 ELVSAAACFSVADAQKYGQAIG-HIGSLAQGVLRVNDKVNAVVDHVRRDRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD +H + + +++ +ED VN I +NL + T Sbjct: 570 LHAALRQVLGEHVAQKGSLVNDNYLRFDFSHPEAMKPEQIRQVEDIVNTQIRRNLSIDTD 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A A GA AL G KY++ VRV+S+ G S LCGGTH TG+I L IVS Sbjct: 630 VMALDAARAKGAMALFGEKYDEHVRVLSM-----GDFSIELCGGTHARRTGDIGLFRIVS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES AGIRRIEA+TG+ A L Q + L + +K + +V + E R L+ Sbjct: 685 ESGTAAGIRRIEAVTGENAIVALHEQSDVLHEVTQLVKGDSNTLADKVRSLLERNRGLEK 744 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K Q ++ S +I V + ++ V+ K L++++D L+ ++ S +I+L Sbjct: 745 ELQQLKEQQAAQESSSLSSKAKEINGVKLLVTQLNNVEPKLLRTMVDDLKNQLGSAVIVL 804 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ + K S++ VT++L +R A +L A + GG GGGRP MAQ+GG + + Sbjct: 805 STVA-DGKVSLIAGVTKELTNRVKAGELIGFVANQV-GGKGGGRPDMAQAGGSDVDALPS 862 Query: 888 AIAGVASFL 896 A+ V +++ Sbjct: 863 ALTSVEAWV 871 >gi|254513877|ref|ZP_05125938.1| alanyl-tRNA synthetase [gamma proteobacterium NOR5-3] gi|219676120|gb|EED32485.1| alanyl-tRNA synthetase [gamma proteobacterium NOR5-3] Length = 867 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/880 (43%), Positives = 543/880 (61%), Gaps = 48/880 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL +F+ + H+ +PSSSL+P +DPTL+FTN+GM FK++F G E Y + Q+ Sbjct: 6 IREAFLAYFESHDHQRVPSSSLVPADDPTLLFTNAGMNQFKDVFLGAESRPYHRAVSAQR 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK +AI+ AWD LT E L + RL+ Sbjct: 66 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKSQAIRFAWDFLTVELGLPKERLW 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TV+ D+EA ++W + G A++I R+ DNFW M +TGPCGPCSE+F+D GE +PGG Sbjct: 126 VTVHLSDDEAERIWIEEIGFPAERISRL-DEDNFWQMGDTGPCGPCSEVFYDHGEDVPGG 184 Query: 187 LPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 PGS ++ +RYIEIWNLVFMQ+ + + LPK S+DTGMGLER+A +LQ +NY+ Sbjct: 185 PPGSPDDDLDRYIEIWNLVFMQYNRSADGQMTPLPKPSVDTGMGLERIAAILQGVHSNYE 244 Query: 246 IDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 ID+F+ LI A+ +V G E +++ RVI DH+RSS+FLI DG+LP NEGR YVLRRI Sbjct: 245 IDVFQALIAAAAEVVGATDLEASSL---RVIADHIRSSAFLIIDGVLPGNEGRSYVLRRI 301 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 MRRA+ + LG TE L+ L +MG YPEL + IEE +R E+E+F +TL++ Sbjct: 302 MRRAIRHGNKLGATELFFSKLVAPLAAQMGDFYPELRAQQARIEEVIRGEEEQFARTLEQ 361 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ +LD L+ L D ++ GDV FKLYDT+G P+D+ DI R + +D+ + +A++ Sbjct: 362 GMEILDEALADLQGD-VIPGDVVFKLYDTYGFPVDLTNDIARERNFS-LDMAGYERAMQV 419 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 QR R++ G G +L+ G T F GY+ + G Sbjct: 420 QRERSKE---GGGFSVDYNSTLTLE---GETVFTGYEHVAG------------------- 454 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 S+ V A+++ E V + G+ V+ DQTPFY E+GGQ GDTG G+ L++T Sbjct: 455 ----SAQVVALLRDAEQVMQLAEGESGVVILDQTPFYGESGGQAGDTGYLSAQGLSLEVT 510 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 D KA+G +HH V +G + +L ID + R+ +NHSATHLLH AL LG H Sbjct: 511 DT-TKAQGHHLHHVKVLQGTVSVGDTLDCRIDNEVRQNTRLNHSATHLLHAALRNELGDH 569 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 V+Q GS + LRFD ++ + ++ +L+++ED+VN I N V T++M +DA +GA Sbjct: 570 VTQKGSLVDAQRLRFDFSNPEAMSDEQLRAVEDSVNAQIRANTDVHTQLMTMDDAKNAGA 629 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 AL G KY D VRV+S+ +DG S LCGGTHV TG+I LL I+SE + +GIRRIE Sbjct: 630 MALFGEKYGDEVRVLSMG-QDG--FSVELCGGTHVQRTGDIGLLRIISEGGLASGIRRIE 686 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLN 782 A+TG A +H+ D L + ++ + NV +V + R L +L K+KL + Sbjct: 687 AVTGANALAHMRSVDGALAGVCDAVRGTTDNVADKVAALRSANRDLEKELARLKQKLASS 746 Query: 783 V-EDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 D++ I + ++ + D L+ +MD + K+ S +I+L ++ +K A ++ Sbjct: 747 AGSDITASAIEVDGIKVLATAVDGADPGALRGIMDQCKSKLGSAVILLAAVNDDKVA-LV 805 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 VT+DL +R A DL + A L GG GGGRP MAQ GG Sbjct: 806 AGVTKDLTERVRAGDLMKEFAGRL-GGKGGGRPDMAQGGG 844 >gi|237799115|ref|ZP_04587576.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021969|gb|EGI02026.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 874 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/892 (44%), Positives = 532/892 (59%), Gaps = 59/892 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G E N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCNNE--NQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY G Sbjct: 420 EEGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGYSATTG-------- 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+ V A+ ++G V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 465 ---------------SATVVALYKEGLSVTHLNEGEEGVVILDSTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + R ++D K G F+HH +V G L + + + R ++NHSATHLL Sbjct: 510 LLAGDARFDVSDTTKTG-GAFLHHGVVASGSLNVGAQVETQVADEVRDATALNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N PV+T Sbjct: 569 HAALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPDQLRALEDIVNTEIRKNTPVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A GA AL G KY D VRV+S+ GG S LCGG H TG+I L IVSE Sbjct: 629 TDIETAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHAKRTGDISLFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAAQDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853 >gi|256830944|ref|YP_003159672.1| alanyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028] gi|256580120|gb|ACU91256.1| alanyl-tRNA synthetase [Desulfomicrobium baculatum DSM 4028] Length = 879 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/916 (41%), Positives = 547/916 (59%), Gaps = 55/916 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLE+FQ++GH + PSSSL+P +DPTL+FTN+GMV FK IF GQEK Y Sbjct: 1 MISAGEIRKRFLEYFQQHGHSVQPSSSLVPQDDPTLLFTNAGMVQFKKIFLGQEKRDYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+LAW+ +T E L Sbjct: 61 AATSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRLAWNFVTVELGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +L+++++ +D+EA +LW+K++ + ++I R+ DNFW+M +TGPCGPCSEI+ DQG Sbjct: 121 DKEKLFVSIFRDDDEAGELWQKVASVPGERIFRLGEKDNFWAMGDTGPCGPCSEIYVDQG 180 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 C P G + +RY+EIWNLVFMQF + LPK SIDTGMGLER+ V Sbjct: 181 ADMACGPDCGIGKC-DCDRYLEIWNLVFMQFNRSEDGTLTPLPKPSIDTGMGLERITAVC 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q K +N+D DLF+ LIQA + G+ Y ++ RVI DH RS +FL+ADG+LP+NE Sbjct: 240 QGKRSNFDTDLFQGLIQAMAKKAGVAYHQGEDSDTALRVIADHSRSIAFLLADGMLPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + +LLG+ EP + + +EMG +PEL+ ++ + +R E+ Sbjct: 300 GRGYVLRRLIRRAYRFGKLLGFDEPFLCETTDQVVSEMGDTFPELVASREFMVRVVRQEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERFG+TLD+GL +L+ ++ L + + G+ AFKLYDT+G PLDI+ DI +G + Sbjct: 360 ERFGETLDKGLRILEDEMASLAAAGSKTITGETAFKLYDTYGFPLDIVNDIAEKQGFL-V 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + + Q+ +++ G G + +L ++FIGYD L + Sbjct: 419 DEAGFREHMSVQKKKSKQAWAGSGDKGLAGQFAALMGAGLESEFIGYDCLAAT------- 471 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S IV + +G+ VE SG V +TPFY E+GGQ+GDTG Sbjct: 472 ---------------SRIVALLDAEGQPVERLRSGVGFMVTL-KTPFYGESGGQMGDTGR 515 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++ D K A + VH + G + + + L ++ R + NHS THLL Sbjct: 516 VQAPTGSARVLDTLKPAPALIVHKIEIGGGEILADQEVELFVEEGERIATARNHSTTHLL 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + P LRFD TH ++ EL+ +ED VN I + P+VT++ Sbjct: 576 HAALRRVLGEHVKQAGSLVGPSRLRFDFTHISGLSPEELRQVEDEVNRAILADAPIVTQV 635 Query: 654 MNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ + A+ A AL G KY VRVV + E S LCGGTH++STG+ ++S Sbjct: 636 MSYDAAVQQKQAMALFGEKYEADVRVVEMAGE-----SVELCGGTHLASTGQAGSFALLS 690 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE----YR 768 E+ I AG+RRIEA+TG A H Q E+++++A+ LK + + ++ + ++ + Sbjct: 691 EAGIAAGVRRIEALTGWDALRHWQAQREEVRTVAATLKAAPHELGKKIIALQDQGKALAK 750 Query: 769 KLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +LQ + A+ R L +D+S K+ ++ + D L+++MD L+ K+ S Sbjct: 751 ELQTLQARVMSESGRDLASEAKDISGMKV-----LARKVDAPDMNALRNLMDDLRSKLSS 805 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 GII L + KA +++ V++DL R+ A L + + + GGGGGRP +AQ+GG Sbjct: 806 GIIALAA-EIDGKAMLVLAVSKDLHGRYTAPALIKEVSDEI-KGGGGGRPELAQAGGSEP 863 Query: 883 NKADQAIAGVASFLKK 898 +A+A + +FL K Sbjct: 864 EGISRALAKLEAFLSK 879 >gi|157364647|ref|YP_001471414.1| alanyl-tRNA synthetase [Thermotoga lettingae TMO] gi|205830273|sp|A8F866|SYA_THELT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157315251|gb|ABV34350.1| alanyl-tRNA synthetase [Thermotoga lettingae TMO] Length = 858 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/902 (42%), Positives = 556/902 (61%), Gaps = 60/902 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R+ FL FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY VTT QK Sbjct: 6 LRSAFLRFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRVTTCQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L++ RL+ Sbjct: 65 CLRT----NDIENVGRTPRHQTFFEMLGNFSFGDYFKKEAIIWAWEFVTEVLKLEKDRLW 120 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG---EC 182 ITVY+EDEE+FK+WK I G+ KIIR+ + NFW A TGPCGPCSEI +D G +C Sbjct: 121 ITVYEEDEESFKIWKDIVGVCEKKIIRMGKDTNFWGPAGPTGPCGPCSEIHYDTGLNEDC 180 Query: 183 IPGGL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P +S+ +R++EIWNLVF +F Q K + LP+ +IDTG GLER+A+V+Q+ Sbjct: 181 SDGECTPANSD--KRFLEIWNLVFTEFYQDEKGALYPLPRKNIDTGAGLERVASVVQKVE 238 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +N++ D+FK +I E V G++Y+ + ++ RVI DH R+ SFLIADG+ P+NE RGY Sbjct: 239 SNFETDIFKPIISKIEDVLGVEYKKDEQKDISIRVIADHSRAVSFLIADGVFPSNEERGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LLG +P + + + MG+ Y EL K LI E R+E+ERF Sbjct: 299 VLRRILRRAVRHGVLLGAQKPFLHLINETVIEHMGNTYSELKNRKDLILEVTRAEEERFF 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT+ +G +L ++S K +++G+ FKLYDT+G P DI+ D+ L +D+ F Sbjct: 359 KTISQGNEMLRDIISRSSK--VIDGEDVFKLYDTYGFPPDIVVDVAKDYNLK-VDLEGFE 415 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + ++ QR RAR+ + +++I+ L +K T F+GYD L C+ Sbjct: 416 KLMKIQRERARSARNNVEYAKSQEIYDELAQK-SKTVFVGYDTLE------------CEA 462 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I L SG K E VFD+T FYAE GGQ+ D G + DG Sbjct: 463 KVIFLKK--------------------SGTKYEAVFDKTSFYAERGGQVSDVGQIVWDGG 502 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + V EGI VH VE+G L+ + L +D + R + NH+ATHLLH AL Sbjct: 503 SASVEHVFIPVEGIIVHIINVEKGELKEGTKVRLIVDREKRLSTARNHTATHLLHAALRK 562 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV Q GS +TP+ LRFD TH KP+T EL SIE+ VN+II +++PV+T + ++A Sbjct: 563 VLGTHVKQAGSLVTPEKLRFDFTHHKPLTDNELMSIENMVNEIILRSIPVITEEKSYKEA 622 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 +A GA AL G KY D VRVV V S LCGGTHV +TG I L IVSES+I +G Sbjct: 623 VAEGAIALFGEKYGDVVRVVKVHS-----FSEELCGGTHVKNTGNIGLFRIVSESAISSG 677 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKR 777 RRIEAITG ++L +++ + ++ L SQ ++ ++E + E+ LQ L K Sbjct: 678 TRRIEAITGFNTLNYLRVKEQLVGNICEKLGTSQDEILSKIENLIEKNINLQKELQQFKS 737 Query: 778 KLQLN-VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 KL ++ ++ +I ++ F+ + ++++S EL+++ D S + +L SK+ K Sbjct: 738 KLLVSQLKQTPFEQIKNIRFVHCVFNDIESNELRNLSDIAVAGENSTVALLFSTSKD-KV 796 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++++ VT+DL + A D+A+ +A++L GGGGGRP AQ+GG + +K + I L Sbjct: 797 NLIVRVTQDLAKKIKAGDIAKYAAQIL-EGGGGGRPDFAQAGGKDPSKINSVIEYTRKLL 855 Query: 897 KK 898 ++ Sbjct: 856 EQ 857 >gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gi|300075693|gb|ADJ65092.1| alanyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1] Length = 874 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/914 (42%), Positives = 551/914 (60%), Gaps = 63/914 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR FL+FF+ H ++ SSSL+P NDPTL+FTNSGMV FK++F G +K Y Sbjct: 2 NSAEIRDKFLKFFESKEHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTDKRNYVRAA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 62 SVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTQVYGLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY D+EA+ +W K GL ++++RI N DNFW MAETGPCGPCSEI Sbjct: 122 DKLWATVYQTDDEAYDIWTKDIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMG 229 F+D G + GG PGS + +G+RYIEIWN VFMQF++Q + LP +DTGMG Sbjct: 182 FYDHGPDVWGGPPGSPDADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMG 241 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADG 289 LER+A +LQ +NY+IDLF+ LI+A+ + TG N + RVI DH+R++SFLI DG Sbjct: 242 LERLAAILQHVHSNYEIDLFQALIKAAARETGETDLSN--ASLRVIADHIRATSFLIVDG 299 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 ++P NEGRGYVLRRI+RRA+ + LG T+P L+ L +MG+AYPEL +A +E Sbjct: 300 VIPGNEGRGYVLRRIIRRALRHGHKLGQTKPFFHKLVKDLVVQMGAAYPELPEAAERVEM 359 Query: 350 TLRSEDERFGKTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 L+ E+ERFG+TL+ G+ +L+ L ++ GK L+G+ AF LYDT+G PLD+ DI R Sbjct: 360 VLKQEEERFGETLEHGMKILEAALAANTGK---LDGETAFTLYDTYGFPLDLTADICRER 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D F A+E Q+S ARA K+ +++ T+F+GY+ L Sbjct: 417 NVE-LDEAGFTAAMERQKSAARAAG-------KFKMAAAIEYTGDKTRFVGYESL----- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S+ V A+ G V++ +GQ VV D TPFYAE+GGQ Sbjct: 464 ------------------AQSAKVVALYVAGSPVQKIEAGQDAIVVLDTTPFYAESGGQC 505 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + D QK +F HH + +G L ++ +D R + NHS Sbjct: 506 GDAGALEAANGLFAVADTQKIQAEVFGHHGQLIKGSLAVGDAVQAKVDADQRARTMRNHS 565 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LGSHVSQ GS + D RFD +H+ P+T+ E++ +E+ VN + N+ Sbjct: 566 ATHLMHKALREVLGSHVSQKGSLVDADKTRFDFSHNAPMTAEEIRRVEEIVNREVLANVA 625 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 ++M +DAIA+GA AL G KY D+VRV+S+ S+ LCGGTHV+ TG+I L Sbjct: 626 TGAQLMGYDDAIAAGAMALFGEKYGDQVRVLSIGT------STELCGGTHVTRTGDIGLF 679 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE + AGIRR+EA+TG+ A + + ++ A+ LK ++ R+ ++ ++ + Sbjct: 680 KIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAALKTQPEELLPRIGQVQDQVK 739 Query: 769 KL--QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSG 823 L +L K KL + D ++ D+N ++ + D L+ MD L+ K+++ Sbjct: 740 ALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGADVATLRETMDKLKDKLKTA 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I+L G K+ K S++ VT D + A +L A+ + GG GGGRP MAQ+GG Sbjct: 800 AIVL-GSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTEPA 857 Query: 884 KADQAIAGVASFLK 897 A+ GVA +++ Sbjct: 858 ALPGALQGVAGWVQ 871 >gi|254372737|ref|ZP_04988226.1| hypothetical protein FTCG_00305 [Francisella tularensis subsp. novicida GA99-3549] gi|151570464|gb|EDN36118.1| hypothetical protein FTCG_00305 [Francisella novicida GA99-3549] Length = 865 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/901 (42%), Positives = 539/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTNAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L +MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGDHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SE I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ + A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|330939519|gb|EGH42850.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. pisi str. 1704B] Length = 874 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 542/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRAADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVLFVEQ 872 >gi|71735960|ref|YP_275660.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola 1448A] gi|83305854|sp|Q48G25|SYA_PSE14 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71556513|gb|AAZ35724.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 874 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|330981768|gb|EGH79871.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 874 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 542/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNSAEDQLKEAATLVKGNRDNLLDKLTAVIERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|323142770|ref|ZP_08077483.1| alanine--tRNA ligase [Succinatimonas hippei YIT 12066] gi|322417415|gb|EFY08036.1| alanine--tRNA ligase [Succinatimonas hippei YIT 12066] Length = 874 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/904 (43%), Positives = 552/904 (61%), Gaps = 55/904 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+T+LEFF+KNGHE++ SSSL+P NDPTL+FTN+GM FK+I+ G+E Y TT QK Sbjct: 8 IRSTYLEFFRKNGHEVVRSSSLVPYNDPTLLFTNAGMNQFKDIYLGKETRPYLRATTAQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGK NDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW LLT+ F L + L Sbjct: 68 CVRAGGKQNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIYYAWTLLTEGFKLPKESLT 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179 +TVY +D EA+ +WK + GL A+KIIRI N DNFW M +TGPCGPCSEIF+D Sbjct: 128 VTVYADDNEAYDIWKNVIGLPAEKIIRIGDNKGGAFNSDNFWQMGDTGPCGPCSEIFYDH 187 Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G + GG PGS EE G+R+IEIWN+VFMQ+ ++ L K ID G+GLER+A VLQ Sbjct: 188 GPGVWGGPPGSPEEDGDRFIEIWNIVFMQYNRKADGTFEKLKKPMIDNGLGLERIAAVLQ 247 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NYDIDLF+ LI + ++ + + RVI DH+RS SFLIADG+LP+NEGRG Sbjct: 248 GVHSNYDIDLFRTLIAKTAEILNVSDLSEKSL--RVISDHIRSCSFLIADGVLPSNEGRG 305 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RL+G + L+ LC MG AYPELI+ + LIE+TL+ E+E+F Sbjct: 306 YVLRRIIRRAVRHGRLMGAKDVFFYKLVGTLCELMGKAYPELIEQRQLIEKTLKKEEEQF 365 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLDRGL +LD L LG + + G+V FKLYDT+G P D+ QD++ RG +D+ F Sbjct: 366 LNTLDRGLAMLDSELDKLGANRTIPGEVVFKLYDTYGFPADLTQDVVRDRGYI-VDMDGF 424 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + + +QR RA++ S G +++ S + F GY+ L C+ Sbjct: 425 EKEMTKQRERAKSAST-FGIDYNKELKLS-----DISIFDGYNHLS------------CE 466 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + G E +E A + ++V +V D+T FY E GGQ+GDTG + G Sbjct: 467 GKIVSMFKG-----------SEPIESASTDEEVIIVLDKTTFYGEMGGQIGDTG-TLRCG 514 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 L I + K +H VE G ++ +D Q R+ ++ +HSATHLLH AL Sbjct: 515 HNLFIVENTKHVGKAIIHVGRVELGQFSVGQTVTAEVDAQRRKDIASHHSATHLLHAALR 574 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS + PD LRFD +H P++ E +++ VN I +N PV T +M+ Sbjct: 575 KVLGDHVFQKGSSVGPDRLRFDFSHPHPLSLDERQAVSALVNKAIRENYPVTTEVMDLNK 634 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A SGA AL KY VRVVS+ G S LCGGTHV+ TG++ I+S+ SI + Sbjct: 635 AKLSGAMALFDEKYEGEVRVVSM-----GEVSKELCGGTHVARTGDLGYFIIISDESIAS 689 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIHA 775 GIRRIEA+TG+ A + L ++ L+ +V+ +V+ + + L+ ++ Sbjct: 690 GIRRIEALTGEAAIEYQQHLARMLAYTSTMLQTDNFSVLEKVKGLINNTKSLEHENMLLK 749 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGISK 832 ++ + ++ + L+ + ++N + +I++VDS +EL+ +D L+ ++S I+L G + Sbjct: 750 EKIVHMDAKALA-YDAVEINGIKIVIAKVDSYNARELRLAVDELKNHLKSCAIVL-GTVE 807 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +K S++ +++DL + A +L ++A + G GGGRP MAQ+GG D+A+ Sbjct: 808 GEKVSLIAALSKDLTSKVKAGELVNVAASCV-NGKGGGRPDMAQAGGTKPEGLDEALEKA 866 Query: 893 ASFL 896 +FL Sbjct: 867 RTFL 870 >gi|257482821|ref|ZP_05636862.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628265|ref|ZP_06461219.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330866242|gb|EGH00951.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 874 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|330988706|gb|EGH86809.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 874 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--SDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|54297712|ref|YP_124081.1| alanyl-tRNA synthetase [Legionella pneumophila str. Paris] gi|59798487|sp|Q5X4B7|SYA_LEGPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|53751497|emb|CAH12915.1| alanyl-tRNA synthetase [Legionella pneumophila str. Paris] Length = 860 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/886 (42%), Positives = 547/886 (61%), Gaps = 60/886 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E YQ T Sbjct: 4 SEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQRAATA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ + R Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIPAER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TVY ED EA +W K +S ++ R DNFWSM +TGPCGPC+EIF+D G + Sbjct: 124 LWVTVYKEDLEAEDIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGPEVA 183 Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS E+G+RYIEIWNLVFMQF + + +LPK S+DTGMGLER+A V+Q +N Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFNRDREGHLHLLPKPSVDTGMGLERLAAVIQGVHSN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNH---RVIVDHLRSSSFLIADGILPANEGRGY 299 Y+ID F++LI+A Q+ G NI +NH +VI DH+RS SFLI DG+LP+NEGRGY Sbjct: 244 YEIDSFQYLIKAIAQL------GQNIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGY 297 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG P L+ L MG AYPELI +K IE L+ E+ +F Sbjct: 298 VLRRIIRRAVRHGNKLGLPSPFFFKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFT 357 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LL + +L K + L+G+VAFKLYDT+G P+D+ DI+ +GL ID+ +FN Sbjct: 358 RTLEQGLRLLQDHIKNL-KGQELSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFN 415 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 Q +++QR +++A S TT+ + ++ + ++F GY+ Sbjct: 416 QLMQQQREQSQAAS----QFTTD--YHAVSQLDHQSEFHGYE------------------ 451 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + + ++Q+G V+ G K V+ D TPFYAE+GGQ+GD G IG Sbjct: 452 -----KESMEAKIIGLLQEGNEVKSINKGAKGAVILDHTPFYAESGGQVGDKGLLIGKNC 506 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 Q+ D QK + + VH+ V +G L ++S+ +D+ R + +NH+ATHLLH AL Sbjct: 507 SFQVDDTQKVGQAV-VHYGEVIKGELTLDLSIHAQVDHIRRDAIRLNHTATHLLHAALKK 565 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+G HV Q GS + + RFD +H + + +++ IE+ VN I N V+T++M+ E A Sbjct: 566 IVGQHVQQRGSLVDAERARFDFSHFEALNPQQIQQIEEVVNAQIRANNEVITQVMDIESA 625 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 SGA AL G KY+D VRV+S+ G S LCGGTH TG+I L IV+E I +G Sbjct: 626 KQSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASG 680 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--- 776 IRRIE +TG+ A + + Q + +LA+ LK + ++ ++ ++ + + + + AK Sbjct: 681 IRRIEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKISQLLLDNKNQEKMIAKLLS 740 Query: 777 RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K Q + D+ +I +N + + +DS+ ++ MD L+ +I S +I+L I ++ Sbjct: 741 EKAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTI-EQN 799 Query: 835 KASVLIVVTEDLLDRF-NAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 K +V+ V+++++ + +A L R G GGGR MAQ GG Sbjct: 800 KMNVIAGVSKNIIGKTPSAAQLVRHLC-----GKGGGRDDMAQGGG 840 >gi|220934463|ref|YP_002513362.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7] gi|219995773|gb|ACL72375.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. HL-EbGR7] Length = 865 Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/900 (43%), Positives = 553/900 (61%), Gaps = 47/900 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +RT+FLE+F+ GHE++PSS LIP NDPTL+FTN+GMV FK++F G+E+ Y T+ Sbjct: 4 ADLRTSFLEYFRSKGHEVVPSSPLIPGNDPTLLFTNAGMVQFKDVFLGREQRPYVRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ L + + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEYLTQVLKLPEEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV++ED+EA +W K G++ ++ RI +DNFWSM +TGPCGPC+EIF+D G +P Sbjct: 124 LWVTVFEEDDEAADIWLKDVGVNPERFSRIGASDNFWSMGDTGPCGPCTEIFYDHGPEVP 183 Query: 185 GGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PG+ E +G+RYIEIWNLVFMQ+++ LP+ S+DTGMGLER+A V+Q +N Sbjct: 184 GGPPGTPEADGDRYIEIWNLVFMQYDRAKDGTLTPLPRPSVDTGMGLERLAAVMQGVHSN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y+IDLF++LI+A + K + RVI DH+RS SFL+ADG++PANEGRGYVLRR Sbjct: 244 YEIDLFQNLIRAIRDMA--KGADPTSPSLRVIADHIRSCSFLVADGVMPANEGRGYVLRR 301 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA + LG EP L+ L EMG AYPEL++A+ ++E LR E+ERF +TL+ Sbjct: 302 IIRRAARHGHKLGLDEPFFHRLVGPLVAEMGEAYPELVKAQPMVERVLRQEEERFAETLE 361 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +GL +L+ + L EI G F LYDT+G P+D+ DI RGL +D+ F +E Sbjct: 362 KGLRILEEDIDGLKGTEI-PGKTIFVLYDTYGFPVDLTGDIARERGLT-LDMAGFEAEME 419 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR RARA S + + + G + F GY+ L G Sbjct: 420 IQRERARAAS------HFDADYHRKLKIEGESAFTGYEHLDG------------------ 455 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 V A+ + GE V+ SG+ VV D+TPFYAE+GGQ+GDTG + +G+ ++ Sbjct: 456 -----QGRVTALFKDGEPVDALASGEHGLVVLDETPFYAESGGQVGDTGELLAEGVIFEV 510 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 TD +K H V G + L ++ R+ + +NHSATHL+H AL ILG Sbjct: 511 TDTRKHG-AAHAHMGRVVEGRIAQGDVLGAKVNQARRQAVVLNHSATHLMHAALREILGD 569 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS + PD LRFD +H +P+++ EL+ IE VN+ I N RIM + A+ SG Sbjct: 570 HVQQKGSLVAPDRLRFDFSHFQPVSAEELERIERRVNEAIRANAEAEARIMPIDQALESG 629 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRV+S+ G S+ LCGGTHV TG+I + I+SES + +GIRRI Sbjct: 630 AMALFGEKYGDEVRVLSM-----GGFSTELCGGTHVRRTGDIGVFKILSESGVASGIRRI 684 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQL 781 EA+TG+ A +++ ++ L +A +K +G++ +V + E R+L +L K KL Sbjct: 685 EAVTGENALNYIGETEKNLSRIAEMVKAGRGDLDEKVALLVERSRQLEKELEALKGKLAS 744 Query: 782 NVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + +VN ++ + D K L+ +D L+ K+ ++L + K+ K S+ Sbjct: 745 AAGSSLADQAVEVNGIKVLAANLEGADPKSLRDTVDQLKNKLGEAAVVLATV-KDGKVSL 803 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + VT+ R A +L A+ + GG GGGRP MA +GG + + A+A V ++++ Sbjct: 804 VAGVTQGQTARLKAGELVNAVAQQV-GGKGGGRPDMAMAGGTDPSGLPGALASVPDWVRE 862 >gi|320323208|gb|EFW79296.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. B076] gi|320329761|gb|EFW85750.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race 4] Length = 874 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 542/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K + VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLAAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|134302304|ref|YP_001122273.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis WY96-3418] gi|205830098|sp|A4IZ01|SYA_FRATW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|134050081|gb|ABO47152.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis WY96-3418] Length = 865 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/901 (42%), Positives = 540/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + + R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ L A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|118497373|ref|YP_898423.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida U112] gi|195536062|ref|ZP_03079069.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE] gi|205830097|sp|A0Q604|SYA_FRATN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118423279|gb|ABK89669.1| alanyl-tRNA synthetase [Francisella novicida U112] gi|194372539|gb|EDX27250.1| alanyl-tRNA synthetase [Francisella tularensis subsp. novicida FTE] Length = 865 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/901 (42%), Positives = 538/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PIEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L +MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SE I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L+ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRDKIDDYKSK-NTKVIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ + A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|254427911|ref|ZP_05041618.1| alanyl-tRNA synthetase [Alcanivorax sp. DG881] gi|196194080|gb|EDX89039.1| alanyl-tRNA synthetase [Alcanivorax sp. DG881] Length = 866 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/887 (43%), Positives = 544/887 (61%), Gaps = 51/887 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL++F GH +PSSSL+P NDPTL+FTN+GM FK++F G+E Y T+ Sbjct: 4 AELRQAFLDYFASQGHTKVPSSSLVPHNDPTLLFTNAGMNQFKDVFLGRESRDYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT L + R Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLPEDR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA +W K G+SA++ R+ DNFW M +TGPCGP SEIF+D G +P Sbjct: 124 LWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGAHVP 182 Query: 185 GGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS E+ +RYIEIWNLVFMQ+++Q E LPK S+DTGMGLER+A VLQ +N Sbjct: 183 GGPPGSEGEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGVHSN 242 Query: 244 YDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 Y+IDLF+ L+QA+ + TG + E ++ RVI DH+RS+SFLI DG++P+NEGRGYVLR Sbjct: 243 YEIDLFQALLQAASKATGCQDLEEKSL---RVIADHIRSASFLICDGVIPSNEGRGYVLR 299 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + LG +P ++ AL +MG AYPEL + + IE+ L +E+E+FG+TL Sbjct: 300 RIIRRALRHGHKLGQDKPFFSTMVSALVEQMGEAYPELGREQARIEKALLAEEEQFGRTL 359 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 G+ +L+ + L ++L G+V F LYDTHG P D+ D+ R L +D+ F A+ Sbjct: 360 AAGMKVLESAIEQL-DGKVLPGEVLFNLYDTHGFPPDLTADVARERALT-VDMDGFETAM 417 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 QR RAR G+G+ + T F GY+ K +D Sbjct: 418 AAQRERAR------GAGSFANDYSDRLNIDAVTDFSGYE-----KLADDD---------- 456 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG---I 539 V A+ + G+ VE +G++ VV +TPFYAE+GGQ+GDTG +G Sbjct: 457 --------AVVALYKDGDAVETLNAGEEGMVVLARTPFYAESGGQVGDTGALMGGDDSET 508 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R +TD +K+ + VH +E G L + +D RR + NHSATHL+H AL Sbjct: 509 RFLVTDTRKR-QAAHVHVGKLESGTLTVGSKVSAYVDVDRRRAVMRNHSATHLMHAALRD 567 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS + D LRFD +H + ++ A+ + IE VN I N V T +M+ + A Sbjct: 568 VLGEHVQQKGSLVAADYLRFDFSHGEAVSEAQREQIEILVNRQILANTAVTTELMDIDAA 627 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 +GA AL G KY+D+VRV+S+ DG S LCGGTHV+ TG+I L I E+S AG Sbjct: 628 REAGAMALFGEKYDDQVRVLSMG-SDG--FSKELCGGTHVNRTGDIGLFRITLEASAAAG 684 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777 +RRIEA+TG+ A + + Q+ L +A+ +K S N RV ++ R+L ++ K+ Sbjct: 685 VRRIEAVTGEHALAVMRQQERALSEIAATVKSSPDNAADRVRSQAQKVRELEKEIERLKQ 744 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEK 834 KL ++ DVN + + +++ DSK L+ MD L+ K+ S +I+L + +K Sbjct: 745 KLASGAGGDLTSEVQDVNGVKVLATQIDGADSKTLRVTMDKLKDKLGSAVILLAAVEGDK 804 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 A ++ VT+DL R+ A DL + A+ + G GGGRP MAQ GG N Sbjct: 805 VA-LVAGVTKDLTARYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNN 849 >gi|328676860|gb|AEB27730.1| Alanyl-tRNA synthetase [Francisella cf. novicida Fx1] Length = 865 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/901 (42%), Positives = 539/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L +MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQFKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SE I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKLIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ + A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNAITTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|308048574|ref|YP_003912140.1| alanyl-tRNA synthetase [Ferrimonas balearica DSM 9799] gi|307630764|gb|ADN75066.1| alanyl-tRNA synthetase [Ferrimonas balearica DSM 9799] Length = 876 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/895 (42%), Positives = 541/895 (60%), Gaps = 59/895 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IRT FLE+F+ GHE++ SSSL+P NDPTL+FTN+GM FK+ F G E+ Y TT Sbjct: 5 TAEIRTAFLEYFRSQGHEVVASSSLVPHNDPTLLFTNAGMNQFKDCFLGAEQRAYTRATT 64 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT+ L + Sbjct: 65 AQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKHDAIKFAWQFLTEVLQLPKD 124 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSEI 175 +L +TVY D+EAF +W K G++A+ IIRI T+DNFW M +TGPCGPC+EI Sbjct: 125 KLCVTVYHTDDEAFDIWNKEIGIAAENIIRIGDKPGKPAYTSDNFWQMGDTGPCGPCTEI 184 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PG+ EE G+R+IEIWN+VFMQF + LPK S+DTGMG+ER+A Sbjct: 185 FYDHGDHIWGGRPGTPEEDGDRFIEIWNIVFMQFNRHADGTMDPLPKPSVDTGMGIERVA 244 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NYDID+F+ LI+ + ++TG N + RV+ DH+RS ++LI DG++P+N Sbjct: 245 AIMQGGHSNYDIDIFQRLIKKAAEITGTTDLDNKSL--RVVADHIRSCAYLIVDGVMPSN 302 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + R LG + L+ L MG+A EL Q + ++E+ LR E Sbjct: 303 EGRGYVLRRIIRRAVRHGRKLGANDTFFFKLVGELADVMGAAGEELKQQQAIVEKVLRIE 362 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E F +TL+RG+ LL+ L +L D +L+G FKLYDT+G P D+ D+ RG + ID Sbjct: 363 EEGFARTLERGMQLLNEALDNLDGD-VLDGATVFKLYDTYGFPADLTNDVARERGFS-ID 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F +E+QR RAR GT S+ + F GY Sbjct: 421 EDGFEVEMEQQRQRARDAGQ---FGTDYSKVVSIDSD---SVFTGY-------------- 460 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK---VEVVFDQTPFYAEAGGQLGDT 531 D T+ +V +V+ E+ +++ G++ +V DQ+PFYAE+GGQ+GDT Sbjct: 461 --------DRTDDQGKVVAILVEGNEV--DSLMGERGTDAVLVLDQSPFYAESGGQVGDT 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++TD QK I H + G + ++ +D R + +NHSATH Sbjct: 511 GVIRCGDAEFEVTDTQKLGNAI-AHKGKLVSGAFQRGDAVAAEVDASRRDAIRLNHSATH 569 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS + D LRFD +H + ++ EL +IE+ VN+ I N + T Sbjct: 570 LLHAALRNLLGDHVTQKGSLVMADRLRFDFSHFEGVSRDELVAIENQVNEQIRANHSIDT 629 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M+ E A A GA AL G KY+D+VRV+++ G +S LCGG H TG+I IV Sbjct: 630 ELMDIEAAKARGAMALFGEKYDDQVRVLAM-----GDYSIELCGGIHAKRTGDIGFFKIV 684 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 SE I AGIRRIEA+TG A + Q+ +L A+ +K +V +V+ + ++ R+L Sbjct: 685 SEGGIAAGIRRIEAVTGNGAVAFARSQENQLLETAALVKGDAQSVASKVKGLLDKNRQLE 744 Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826 +L K+KL D+ + +IS++ DSK L+ ++D L+ ++ SGI++ Sbjct: 745 KELEQLKQKLASAASANLVDSAVDMGGVKVLISQLENADSKALRGMVDDLKNQMGSGIVL 804 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L ++ + K ++ VT+DL + A +L L A+ + GG GGGRP MA +GG + Sbjct: 805 LGNVA-DGKVGLIAGVTKDLTGKVKAGELVNLVAQQV-GGKGGGRPDMAMAGGTD 857 >gi|88658226|ref|YP_507768.1| alanyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas] gi|123492839|sp|Q2GFL5|SYA_EHRCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|88599683|gb|ABD45152.1| alanyl-tRNA synthetase [Ehrlichia chaffeensis str. Arkansas] Length = 887 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/896 (42%), Positives = 546/896 (60%), Gaps = 57/896 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS++R +F++FF KNGH++ PSS LI +DP+L+FTN+GMV FK +FT T+ Sbjct: 7 VSNLRKSFIDFFAKNGHQVFPSSPLILKDDPSLLFTNAGMVQFKQMFTNPNNANVNTATS 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+ AW+ + KE L + Sbjct: 67 SQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGSYFKEGAIEFAWNFVIKELSLSKD 126 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY TVY +D+EAF LWKKISG+S +II+ITT+DNFWSM TGPCGPCSEIF+D G+ + Sbjct: 127 RLYFTVYHDDQEAFDLWKKISGVSDSRIIKITTSDNFWSMGNTGPCGPCSEIFYDYGDNV 186 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GGLPG+ EE G R+ EIWNLVFMQ++++ E +LPK IDTGMGLER+A V+Q + Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMQYDRKLDGELCVLPKKCIDTGMGLERIAAVMQGVHD 246 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYDI LFK LI AS++ +G N + HRVI DH+RS++FLIA+G+ P NEGR Y+LR Sbjct: 247 NYDISLFKALIAASKEQSG---NSTNELAHRVIADHVRSAAFLIAEGLTPGNEGRNYILR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPAL-----CTEMGSAYPELIQAKLLIEETLRSEDER 357 RI+RRA Y +L Y + LM + P L C M YPELI AK LI L+ E+E Sbjct: 304 RIIRRAARYVYMLKYDDALMYKVFPTLIDEESCGYMADYYPELIHAKDLIMSILKIEEEN 363 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TL R L LL+ L +L +IL+GD+ FKLYDT+G P+DI DI+ +G+ D Sbjct: 364 FKDTLVRALPLLEKELMNLSSGDILSGDIVFKLYDTYGFPVDITLDIIKEKGVK-FDEQG 422 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + +Q+ R++ HS+ E+ W +KE+ G+T+F+GY+ + D K Sbjct: 423 FYDNMNKQKERSKLNHSIKSDQQLKEEFWVDIKERCGSTKFVGYE--------RYDTK-- 472 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533 ++++ + + VE A G KV ++ D TPFYAE+GGQ GD G Sbjct: 473 ------------ATVLSIVCGGDKNVEIANVGDKVSILLDITPFYAESGGQKGDVGIFNV 520 Query: 534 --------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D I ++ D +K + +++H I+++G L + ID + RR L Sbjct: 521 IVRQEKELFANDNIA-EVIDTKKVLDTLYIHECIIKQGSLMVGDVIFAKIDCERRRNLCA 579 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH+ L + + S + Q GS ++ + LRFD ++ +T +L IED + +I+ Sbjct: 580 NHSATHLLHYVLKSEIDSSIMQKGSLVSDEKLRFDFSYGVALTKEQLTLIEDKMYSLISG 639 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N PV++ + + +DA+A GA AL KY + VRVVS++ S LC GTHV T E Sbjct: 640 NNPVISHVCDLKDAVAGGAVALFTEKYEEHGVRVVSIK------DSKELCCGTHVKYTSE 693 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I IVSE+SI GIRRIEA+TG+ A + Q++ L S+A +KV NV+ +++++ Sbjct: 694 IGCFKIVSEASIACGIRRIEAVTGRYAIDYFRQQEKMLNSIAESVKVPVDNVLVQIDKLD 753 Query: 765 EEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ ++L+ + + N++ ++ KI +V+F+ +S + ++ ++ K + + Sbjct: 754 KKNQELEQKLSDVYFDMINLQGVNTEKIGNVDFLYSNLSNIPVNVMRKFIN---KHLTAD 810 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 I+L + ++ V L + AVD ++ ++ GGG +AQ G Sbjct: 811 RIILFANVVGQNVVCVVGVGNSLHCKVKAVDFVKMIGTMV-KSKGGGNAQLAQING 865 >gi|171464036|ref|YP_001798149.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193574|gb|ACB44535.1| alanyl-tRNA synthetase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 874 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/911 (43%), Positives = 542/911 (59%), Gaps = 60/911 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS IR +L+FF + GH+++PSS ++P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 VSQIRQAYLDFFAQKGHQIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYNRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AIQ AWDLLT+ F L + Sbjct: 63 TQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIQFAWDLLTQIFKLPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L +TVY ED+EAF++W K G+ A++IIRI N DNFW M +TGPCGPCSEIF Sbjct: 123 KLLVTVYAEDDEAFEIWNKQIGVPANRIIRIGDNKGARYASDNFWMMGDTGPCGPCSEIF 182 Query: 177 FDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D G+ IPGG PGS E+G+RYIEIWN VFMQF + LPK S+DTGMGLER+A Sbjct: 183 YDHGDHIPGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERIAA 242 Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 VLQ +NY+IDLF +L++AS++ G + + +VI DH+R SF++ DG++P Sbjct: 243 VLQHVHSNYEIDLFVNLLKASKEAVDAAGGENCDPESPSLKVIADHIRVCSFIVVDGVIP 302 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 N GRGYVLRRI RRA+ + LG +P L+PAL EM AYPEL A+ + E ++ Sbjct: 303 GNAGRGYVLRRIARRAIRHGYKLGARKPFFYQLVPALVKEMSDAYPELRAAQDKVSEVIK 362 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERF +T+ G+ +LDG L+ G ++++G+ AF+L+DT G PLD+ D+ RG+ Sbjct: 363 QEEERFFQTIANGMEILDGALA--GDAKVVDGETAFRLHDTFGFPLDLTTDVCRERGVT- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR--GSKFMK 470 +D F+ +++QR +ARA K+ L K TQF GYD L+ G+K Sbjct: 420 VDADGFDVVMQKQRDQARA-------AGKFKVAQGLDYKGRPTQFYGYDTLKHEGAK--- 469 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 V A+ G V +G +V D TPFYAE+GGQ+GD Sbjct: 470 ---------------------VTALYVDGSAVPCVKAGDVAVIVLDNTPFYAESGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + IR + K +F H V G L+ L +D + R NHSAT Sbjct: 509 KGELRNESIRFAVEGTFKIQADVFGHQGEVLEGELKVGDVLNAIVDTRQRTDTMRNHSAT 568 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H+LH AL +LG HV Q GS + RFD TH+ PIT ++ IED VN I +N Sbjct: 569 HILHRALREVLGDHVQQKGSLVDAAKTRFDFTHNAPITVEQIHRIEDIVNREILENTATS 628 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 ++M+ +DA +GA L G KY D VRV+ + S LC GTHVS TG+I L I Sbjct: 629 GKVMSLDDAQKTGAMMLFGEKYGDEVRVLEIG------SSKELCCGTHVSRTGDIGSLKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE + AGIRR+EA+TG A L G ++K+ A+ LK G++V RV ++ + R+ Sbjct: 683 VSEGGVAAGIRRVEAVTGNNALHFLQGLEDKVNEAAAILKTHPGDLVNRVAQLQDSLRQA 742 Query: 771 --QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825 +L KL + D + DVN ++ I+ D+ L+ MDAL+ K+++ I Sbjct: 743 ERELEKVNSKLAASQGDELAGQAIDVNGIKVLAARINSADASVLRKTMDALKAKLKTAAI 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + + K S++ VT D + + A DL A+ + GG GGG+P MA +GG + +K Sbjct: 803 VLASVQGD-KVSLIAGVTTDSIGKIKAGDLVNFVAQQV-GGKGGGKPEMAMAGGTDPSKL 860 Query: 886 DQAIAGVASFL 896 A+ GV ++ Sbjct: 861 GVALDGVKDWV 871 >gi|289650414|ref|ZP_06481757.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. aesculi str. 2250] Length = 874 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 569 HAALRQLLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|330881471|gb|EGH15620.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. glycinea str. race 4] Length = 874 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/911 (43%), Positives = 542/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTPVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSAAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K + VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLAAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|167628656|ref|YP_001679155.1| alanyl-tRNA synthetase [Heliobacterium modesticaldum Ice1] gi|205830065|sp|B0TFY7|SYA_HELMI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167591396|gb|ABZ83144.1| alanyl-tRNA synthetase [Heliobacterium modesticaldum Ice1] Length = 883 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/904 (42%), Positives = 555/904 (61%), Gaps = 45/904 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FLE+F++ GH ++ SSSL+P NDPTL+F+N+GM FK++F G EK Y TT QK Sbjct: 8 VRQLFLEYFEQKGHTIVASSSLVPHNDPTLLFSNAGMNQFKDVFLGFEKRPYLRATTSQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L + +LY Sbjct: 68 CVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKKDAIRYAWEFLTDVCGLPKDKLY 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CI 183 TVY +D+EAF LW+ + GL +I+R+ DNFW+M +TGPCGPCSEI D+GE C Sbjct: 128 ATVYLDDDEAFALWRDMIGLPEARILRLGEKDNFWAMGDTGPCGPCSEILIDRGEHLRCK 187 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 + +R++EIWNLVFMQ+ + LP+ SIDTGMGLER+ +VLQ+ +N Sbjct: 188 AEECAIGKCDCDRWLEIWNLVFMQYNRDENGTMTPLPRPSIDTGMGLERVTSVLQKVGSN 247 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 YD DL + LI EQ+ G Y ++ RVI DH+RS +FLI DG+LP+NEGRGYVLR Sbjct: 248 YDTDLLRPLIAFVEQLCGQVYHRDDRGFPFRVIADHIRSCTFLITDGVLPSNEGRGYVLR 307 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + ++LG +P M ++P + MG AYP++ + + + + ++ E+ERF +TL Sbjct: 308 RILRRAVRFGKVLGIDKPFMYEIVPVVVELMGEAYPDIREKQDFVCKVIKIEEERFHETL 367 Query: 363 DRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 G+ + +++ + ++ +L G AF LYDT+G PLD+ +DI GL +D F Q Sbjct: 368 HDGMRIAADMVAKVKQEGGNVLPGKQAFTLYDTYGFPLDLAEDIAEENGLT-VDKDGFQQ 426 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+E QR RARA G ++W L ++ G T F GY G Sbjct: 427 AMEAQRERARAARQDTAYGAGMELWAELLQQLGPTVFTGYGRTSG--------------- 471 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGI 539 S+VKAIV V EA +G V+VV +TPFYAE+GGQ+GD+G GD + Sbjct: 472 --------ESVVKAIVAGATRVTEAGAGTAVQVVLAETPFYAESGGQIGDSGLLRAGDAV 523 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++ D +K A G+ VH +V G+ + +V ++ R ++ +HSATHL+H AL Sbjct: 524 -VRVEDTKKMAGGLHVHFGVVAEGVFKEGDQVVAEVESARRLAIARHHSATHLMHKALKE 582 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS +TPD LRFD +H P+T E IE VN + Q LPV + ++A Sbjct: 583 VLGEHVNQAGSLVTPDRLRFDFSHFSPLTRDEWNRIEAAVNRAVFQALPVEVFETSIDEA 642 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA AL G KY DRVRVV + G +S LCGGTH+ +T ++ L ++SES I AG Sbjct: 643 KAMGATALFGEKYGDRVRVVRM-----GNYSMELCGGTHLDNTSQVGLCKLLSESGIGAG 697 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-----QLIH 774 +RRIEA+TG+ A ++L Q+E ++ LA LKV V RV+ + + R+ QL+ Sbjct: 698 LRRIEAVTGEAALAYLNEQEETVRMLAEKLKVPAAEVTNRVDSLQAQLREKEREMEQLLS 757 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K Q++ +I V ++ + D L+S+ D L++K+ SG+++L ++ + Sbjct: 758 RLAKYQIDDLLAGKEEINGVTVLAAKVQAPDMDALRSMSDLLKEKLGSGVLILGAVAGD- 816 Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K +++ T+D++ R +A +L + +AKV GGGGGGRP MAQ+GG + ++ A+ Sbjct: 817 KVNLVAAATKDIVGRGVHAGNLVKEAAKVC-GGGGGGRPDMAQAGGKDPSRLSDALEAAK 875 Query: 894 SFLK 897 LK Sbjct: 876 KLLK 879 >gi|224457282|ref|ZP_03665755.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370663|ref|ZP_04986668.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis FSC033] gi|254874986|ref|ZP_05247696.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis MA00-2987] gi|151568906|gb|EDN34560.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis FSC033] gi|254840985|gb|EET19421.1| alanine-tRNA ligase [Francisella tularensis subsp. tularensis MA00-2987] Length = 865 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/901 (42%), Positives = 540/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + + R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGHLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ ++++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSKIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ L A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|58616869|ref|YP_196068.1| alanyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel] gi|75356993|sp|Q5FH56|SYA_EHRRG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|58416481|emb|CAI27594.1| Alanyl-tRNA synthetase [Ehrlichia ruminantium str. Gardel] Length = 887 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/892 (42%), Positives = 537/892 (60%), Gaps = 55/892 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS +R F++FF KNGH+ PSS LI +DP+L+FTN+GMV FK IFT + + Sbjct: 7 VSDLRRLFIDFFVKNGHQFFPSSPLIIKDDPSLLFTNAGMVQFKQIFTSVDGRSINTAVS 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+LAW+ + KE LD++ Sbjct: 67 SQKCLRVGGKHNDLENVGHTNRHHTFFEMLGNFSFGSYFKEHAIELAWNFVIKELALDRK 126 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLYITVY +D++AF LWKKIS S DKII+I TNDNFWSM GPCGPCSEIF+D GE + Sbjct: 127 RLYITVYHDDQDAFNLWKKISSFSDDKIIKIKTNDNFWSMGNVGPCGPCSEIFYDYGESV 186 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GGLPG+ EE G R+ EIWNLVFM++ + + E +LP+ IDTGMGLER+A V+Q + Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMEYNRTKEGELSVLPRKCIDTGMGLERIAAVMQGVHD 246 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYDI+LFK LI S++ +G + + HRVI DH+RS++FLIA+G+ P NEGR Y+LR Sbjct: 247 NYDINLFKALIAMSKKESG---NSSCEIAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357 RI+RRA Y +L YT+ LM + P L E M YPEL++AK +I L++E+E Sbjct: 304 RIIRRAARYVYMLKYTDSLMYKIFPVLIDETSNAYMADYYPELLKAKDMIISILKTEEEN 363 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TL R L LL+ L++L ++L+GDV F+LYDT+G P+DI DI+ RG+ D Sbjct: 364 FKDTLVRALPLLEKELTYLSAGDVLSGDVIFRLYDTYGFPVDITLDIIKERGIR-FDEKG 422 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F +E+Q++R+R +H + KIW +++ Y T+F+GYD + Sbjct: 423 FYDNMEQQKTRSRLSHLIKSTEQLNGKIWEDIRQNYNNTRFVGYDNFQVQ---------- 472 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533 S I+ ++ V A G KV ++ D TPFYAEAGGQ DTG Sbjct: 473 ------------SKILSMVMNNDRNVTVANVGDKVSILMDVTPFYAEAGGQQADTGLLSV 520 Query: 534 -------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 G +T+ + +G+++H I++ G L + I+ R+ L N Sbjct: 521 VRRDGKDLFGSSNIADVTNTKNIFDGLYIHECIIKSGSLIIGDIVSAEINSHRRKDLCAN 580 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH+ L + +++ Q GS + D LRFD +++ +T ++K IE+ + D+I QN Sbjct: 581 HSATHLLHYILRMEIDNNIMQKGSLVGNDKLRFDFSYNMALTEKQIKLIENRMCDLIRQN 640 Query: 647 LPVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 PV T I N +DA+ +GA AL KY N VRVV++ +S LC GTHV TGEI Sbjct: 641 HPVETNICNLQDAMDNGAIALFTEKYDNHEVRVVNIG------NSKELCCGTHVKYTGEI 694 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 I+SESSI GIRRIEA+TGQ A + Q++ L +A +K +V+ ++++I Sbjct: 695 GCFKIISESSIACGIRRIEAVTGQYAIDYFRQQEKVLYQVAESVKSPVEDVLVQIDKINR 754 Query: 766 EYRKL-QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 E ++L Q + A ++++ ++ KI ++NF+ +S V + V + K++ + Sbjct: 755 ENQELKQKLWAAYFDIIDMQGVNIEKIGNINFLHGTLSGV---PIDVVRKFIMKRLVKDM 811 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 IML ++ V L + A D ++ V+ GGG +AQ Sbjct: 812 IMLFSNVVNHNRIYVVGVGNSLHSKVKAADFVKIINCVVKSKGGGN-AQLAQ 862 >gi|330811260|ref|YP_004355722.1| Alanine--tRNA ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379368|gb|AEA70718.1| Alanine--tRNA ligase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 873 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/911 (43%), Positives = 543/911 (59%), Gaps = 60/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y + Sbjct: 4 AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS Q G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLSASAQAIGCT--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ GDV FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-KGNVVPGDVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ AT+F GY Sbjct: 420 EEGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATEFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G + IV AI + G+ V+ GQ+ +V D+TPFYAE+GGQ+GD+G Sbjct: 460 ---------AGTTGSAKIV-AIYKDGQSVDILSEGQEGVIVLDKTPFYAESGGQIGDSGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K G F+HH ++ G L + +D R S+NHSATHLL Sbjct: 510 LQAGSSRFDVRDTTKTG-GAFLHHGVLASGSLMIAAPVAAHVDADVRHATSLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +LK++E+ VN I +N PV T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLKALEEIVNAEIRKNSPVETEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A GA AL G KY D VRV+S+ G S LCGG H + TG+I L+ I+SE Sbjct: 629 TDIETAKRKGAMALFGEKYGDSVRVLSM-----GDFSVELCGGIHANRTGDIGLMKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + +G+RRIEA+TG A ++L +E+LK A+ +K S+ N++ ++ + E R + Sbjct: 684 GGVASGVRRIEAVTGAAALAYLNAAEEQLKEAATLIKGSRDNLIDKLSAVLERNRLLEKQ 743 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 744 LEQLQAKAASAAG-DDLSAQAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAVILL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E+K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 803 -GSVHEEKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGTDVGALDA 860 Query: 888 AIAGVASFLKK 898 A+A +F+++ Sbjct: 861 ALAQTVAFVEQ 871 >gi|89256431|ref|YP_513793.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica LVS] gi|115314869|ref|YP_763592.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica OSU18] gi|156502533|ref|YP_001428598.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010686|ref|ZP_02275617.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC200] gi|254367771|ref|ZP_04983792.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica 257] gi|122325116|sp|Q0BLS9|SYA_FRATO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|122500687|sp|Q2A3A9|SYA_FRATH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830095|sp|A7NCD9|SYA_FRATF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|89144262|emb|CAJ79545.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica LVS] gi|115129768|gb|ABI82955.1| alanine--tRNA ligase [Francisella tularensis subsp. holarctica OSU18] gi|134253582|gb|EBA52676.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica 257] gi|156253136|gb|ABU61642.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 865 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/901 (42%), Positives = 540/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + + R + NHSATHLL+ AL Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETSIGDIKIVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ L A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|331012342|gb|EGH92398.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 874 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/911 (43%), Positives = 542/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ I R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGGIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-ALYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +DLS + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDLSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|291279844|ref|YP_003496679.1| alanyl-tRNA synthetase [Deferribacter desulfuricans SSM1] gi|290754546|dbj|BAI80923.1| alanyl-tRNA synthetase [Deferribacter desulfuricans SSM1] Length = 871 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/900 (41%), Positives = 546/900 (60%), Gaps = 44/900 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL++F+ GH +PSSSL+P NDPTL+FTN+GM FK++F G+EK Y + QK Sbjct: 6 IREKFLKYFESKGHTRVPSSSLVPHNDPTLLFTNAGMNQFKDVFLGREKRDYTRACSCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 VRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE +L +LY Sbjct: 66 VVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEYAWEFLTKEINLPADKLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ITVY +D+EAF++W K G+ AD+I R+ DNFW+M +TGPCGPCSEI DQG I G Sbjct: 126 ITVYKDDDEAFEIWNKHIGVPADRIYRMDEKDNFWAMGDTGPCGPCSEILIDQGPEIGCG 185 Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 + +R++E+WNLVFMQ+ + + LPK SIDTGMGLER+ V+Q+ +N+ Sbjct: 186 RADCDPYCDCDRHLELWNLVFMQYNRDESGKLNPLPKPSIDTGMGLERVTAVVQKVPSNF 245 Query: 245 DIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 D DL K +I+ + +++ Y N + + RVI DH R+++FLI+DG+LP+NEGRGYVLR Sbjct: 246 DTDLIKPIIEYAAKLSNKNYGDNEKDDTSLRVIADHARATTFLISDGVLPSNEGRGYVLR 305 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RIMRRAM + ++LG+ E + +C M Y EL+ K + + ++ E+ERF KTL Sbjct: 306 RIMRRAMRHGKMLGFKESFFYQVCEFVCDFMNDPYIELMDKKSYVSKVVKFEEERFNKTL 365 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 + GL + + +L +++ + G F+LYDT+G P+D++QDI+ G +D++ F++ + Sbjct: 366 ETGLKIAEELLEKYKENKEIPGFEIFRLYDTYGFPVDLLQDIMEDNGYK-LDLVGFDEEM 424 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 ++Q+ RA+ G G I+ L+ ++ T+FIGY+ + Sbjct: 425 KKQQERAKNAWAGSGESFIADIYKKLENQF-KTEFIGYENTKS----------------- 466 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 S V AIV+ +E + E++ D+TPFY E+GGQ+GDTG + ++ Sbjct: 467 ------ESSVLAIVKDDNETQEISESSEFELILDKTPFYPESGGQVGDTGKIYNENCNIE 520 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D KK + VH + + G ++ + ID + R+ NH+ATHLLH AL +LG Sbjct: 521 VLDC-KKVGNLIVHKSKLLSGKIKKGDKVTAVIDVEKRKNTERNHTATHLLHKALQMVLG 579 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS + PD LRFD TH P+ E+K IE VN+ I +N+ V I E+AI Sbjct: 580 DHVRQAGSLVAPDRLRFDFTHFAPVDDEEIKKIELLVNENIIKNIEVTKTIKPIEEAIKE 639 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY+ VRVV V S LCGG HV TG+I + IVSE+S+ AGIRR Sbjct: 640 GAMALFGEKYDKEVRVVEVP-----GFSKELCGGCHVGRTGDIGIFKIVSEASVAAGIRR 694 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+TG A + K A LK + +V ++ E+ E+ + Q K + +LN Sbjct: 695 IEAVTGLEAVKFTQEINSIAKKSALLLKSNINDVPSKITELQEQLKNTQKELTKLQDKLN 754 Query: 783 ---VEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKA 836 ED+ + + ++N + + +D+ E L++ +D + KI+SGI+ LVG K Sbjct: 755 ASKAEDILSN-VKEINGIKVLAIRMDNTEINALRNFVDMAKAKIKSGIV-LVGSVNGDKV 812 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + L VT+DL ++ A D+ + AK+ GGGGGG+P +AQ+GG N K D+A+ + + L Sbjct: 813 TFLCGVTKDLTSKYKAGDIVKEIAKIT-GGGGGGKPELAQAGGKNPEKIDEALNHIYNIL 871 >gi|317050904|ref|YP_004112020.1| alanyl-tRNA synthetase [Desulfurispirillum indicum S5] gi|316945988|gb|ADU65464.1| alanyl-tRNA synthetase [Desulfurispirillum indicum S5] Length = 893 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/901 (41%), Positives = 542/901 (60%), Gaps = 45/901 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N +R FL +F+ GH+++ SS LIP +DPTL+FTN+GM FKNIF G EK Y Sbjct: 12 NAQQVRQQFLSYFESKGHKVVASSGLIPFDDPTLLFTNAGMNQFKNIFLGNEKRDYNRAA 71 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ +T+ LD+ Sbjct: 72 TAQKCVRAGGKHNDLENVGVTARHHTFFEMLGNFSFGDYFKREAIEYAWEFITEVMKLDR 131 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 RL+++V+ ED+EA +W+ G+ A++I+R DNFW M ETGPCGPCSEI +DQG Sbjct: 132 SRLWVSVFREDDEALAIWRDHIGVPAERILRCGEKDNFWQMGETGPCGPCSEIHYDQGPD 191 Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 C GG G E +RY+EIWNLVFMQ+++Q LPK SIDTGMGLER+A V+Q Sbjct: 192 VPCTEGGPCGVECECDRYLEIWNLVFMQYDRQPDGTLVPLPKPSIDTGMGLERLAAVVQG 251 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +T+NY DLF L+ GM Y + V+ RVI DHLR+S+FLI+DG +P+NEG Sbjct: 252 ETSNYHTDLFLPLLNRIAADCGMTYTRSASHQDVSMRVIADHLRASTFLISDGAIPSNEG 311 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRIMRRAM +A LG EP M L+ + G A+PE+++ + ++EE + E+ Sbjct: 312 RGYVLRRIMRRAMRHANQLGKKEPYMYSLVCLMEEHYGEAFPEIVKNRAMVEEIIYQEER 371 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF TLD GL +L+ +++ L K L+G AFKLYDT+G PLD+ DIL RG+ +D Sbjct: 372 RFANTLDHGLAILEEMVAGLQKSAQVALDGQSAFKLYDTYGFPLDLTVDILEDRGIT-VD 430 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+EEQ+ RARA + S T+ + L E +F GYD L Sbjct: 431 EAGFYAAMEEQKVRARASWKAVASVTSSED-LRLIESRHQQEFSGYDFLSAK-------- 481 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +S++ + Q + + +G++ ++ D+TPFYAE+GGQ+ DTG Sbjct: 482 --------------ASVIGLLDLQENSLSQVRAGEEAWLLLDKTPFYAESGGQVADTGVV 527 Query: 535 IGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 DG + ++ V+K G+ +H +V +G ++ T++ + RR +++NHSATHLL Sbjct: 528 ATDGGDIFEVRSVRKSIGGLHLHRGVVSQGRFSAGDAVTATVNSRRRRNITLNHSATHLL 587 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL + +G HV Q GS + LRFD TH K +T EL+ +ED VN + N V + Sbjct: 588 HAALKSTVGEHVRQAGSLVEDGKLRFDFTHWKGLTPEELQGVEDQVNAQVMANHAVRKEL 647 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +DA+A GA AL KY D VRV+++ G +S LCGGTHV +TG+I L I+SE Sbjct: 648 MTLDDAVARGATALFDEKYGDDVRVITM-----GDYSMELCGGTHVDATGQIGLFKILSE 702 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S+I AG+RRIEA TG A + + + A LK + ++E++ E R+L+ Sbjct: 703 SAIAAGVRRIEATTGPGALQVVRDLQKTVGDAARMLKTRPEELCAKIEKLLEGNRQLEKQ 762 Query: 774 HAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828 + + +++ + S ++ +V+ + ++ + K ELK ++D+ + ++ ++ L Sbjct: 763 QRELQEKMSARETSTLQEQVEEVSGVKVLLQSFEGKSVEELKQIVDSAKHQLGEVVVALA 822 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K ++ V+E L R A DL ++ A GGGGGG+P AQ+GG K +A Sbjct: 823 SVV-DGKVLFVVGVSEALSQRVRAGDLVKILATTC-GGGGGGKPTFAQAGGREPGKIAEA 880 Query: 889 I 889 + Sbjct: 881 L 881 >gi|187931901|ref|YP_001891886.1| alanyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica FSC147] gi|205830096|sp|B2SH99|SYA_FRATM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|187712810|gb|ACD31107.1| alanyl-tRNA synthetase [Francisella tularensis subsp. mediasiatica FSC147] Length = 865 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/901 (42%), Positives = 540/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E++ F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEKLFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q ++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYQDDQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + + R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + D LRFD TH K I+ +E++ IE VN I N PV T ++++ A Sbjct: 567 VLGGHAEQKGSLVDEDRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIEISQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDINLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ L A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|298488157|ref|ZP_07006194.1| Alanyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157436|gb|EFH98519.1| Alanyl-tRNA synthetase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 874 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/911 (43%), Positives = 543/911 (59%), Gaps = 59/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T Sbjct: 4 AEIREAFLGFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPCSEI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + IE L+ E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHIERVLKGE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 420 EAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T G +S+V ++ ++G+ V G++ V+ D TPFYAE+GGQ+GD+G Sbjct: 460 ---------SATTGSASVV-SLYKEGQSVTHLNEGEEGVVILDTTPFYAESGGQIGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +R ++D K G F+HH +V G L + + + R +NHSATHLL Sbjct: 510 LHAGDVRFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N V+T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPDQLRALEDIVNAEIRKNTEVMTEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I L IVSE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIALFKIVSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----K 769 + AG+RRIEA+TG A + L +++LK A+ +K ++ N++ ++ + E R + Sbjct: 685 GGVAAGVRRIEAVTGAAALAWLNAAEDQLKEAATLVKGNRDNLLDKLTAVLERNRLLEKQ 744 Query: 770 LQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L+ + AK +D+S + V ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAG-DDMSSAALDVKGVKVLATRLDGQDGKALLALVDQLKNKLGRAVILL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG + D Sbjct: 804 -GSVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGALDS 861 Query: 888 AIAGVASFLKK 898 A+A F+++ Sbjct: 862 ALALAVPFVEQ 872 >gi|241668454|ref|ZP_04756032.1| alanyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876987|ref|ZP_05249697.1| alanyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843008|gb|EET21422.1| alanyl-tRNA synthetase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 865 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/900 (42%), Positives = 541/900 (60%), Gaps = 45/900 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MISTKELRNKFISYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGLEKRDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W GL ++IIRI +NDNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYATDDEAFDVWHNHIGLPKERIIRIDSNDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+G+RYIEIWN+VFMQF + LPK S+DTGMGLER+A VLQ+ Sbjct: 181 EDVAGGLPGTPDEDGDRYIEIWNIVFMQFNRHADGTVTDLPKPSVDTGMGLERIAAVLQD 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYDIDLF+ LI+ +++VT + N + +V+ DH+RS +FLIADG+LP+NEGRGY Sbjct: 241 VHSNYDIDLFQALIKKAQEVTNA--DDINSPSLKVVADHIRSCAFLIADGVLPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG + L+ L +MG AYP+LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKLGAKDIFFYKLVAELINQMGEAYPQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +T++ G+ + D ++ L D I +G++AF+LYDT+G PLD+ D+ +GL +D +F Sbjct: 359 RTIENGIKIFDTEIASLKCDTI-SGEIAFRLYDTYGFPLDLTADMAREKGLK-VDEEAFK 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + + +Q+ R++ +G + S+ + F GY L ED KVL Sbjct: 417 EQMLKQKQRSKE------AGKFNVDYNSIINSQAKSNFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G+ V + +V D+TPFYAE+GGQ+GD G G G+ Sbjct: 462 --------------EIYQDGQPVNTIQAESTAVIVLDRTPFYAESGGQVGDKGVLEGVGV 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +GIL T + ++ R + NHSATHLLH AL Sbjct: 508 EFIVEDVQKSGEAI-LHIGKLSKGILNTYDEVTARVNDSVRLATAANHSATHLLHKALKI 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSH Q GS + + LRFD TH K I+ E++ IE VN I N PV T ++E A Sbjct: 567 VLGSHAEQKGSLVDDNKLRFDFTHDKAISRVEIEQIETLVNQQIRANYPVATIETSQEKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L IVSES I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIVSESGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEAIT +A + + KL ++ K + N++ +++ + E + + AK K Sbjct: 682 IRRIEAITADKAIKYTFAIENKLAAIKEITKSNDSNLLDKLQSMLEHLKNQEKEIAKLKK 741 Query: 780 QLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 + S K + ++ + II+ VD K L+ +D + K + +L I+ + K Sbjct: 742 DILSGANSNIKESSIDGIKLIIANLEGVDIKTLREKIDDYKSKNDKMVAVLSTINAD-KV 800 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V++ + A D+A+ + + G GGGRP MAQ GG N D+A++ + ++ Sbjct: 801 QFVIGVSKSITSLIKAGDIAKEFSGYI-DGKGGGRPDMAQGGGNNSTNIDKALSDLEKYI 859 >gi|170722926|ref|YP_001750614.1| alanyl-tRNA synthetase [Pseudomonas putida W619] gi|169760929|gb|ACA74245.1| alanyl-tRNA synthetase [Pseudomonas putida W619] Length = 897 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 27 AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 86 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K +L + Sbjct: 87 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLNLPK 146 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 147 EKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 206 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 207 FYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 266 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 V+Q +NY+IDLF++L+ A+ + G +G + +V+ DH+RS FLIADG+LP+N Sbjct: 267 AVMQHVHSNYEIDLFQNLLSAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 324 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 325 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 384 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K +++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 385 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 442 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + AT F+GY+ G Sbjct: 443 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDTATDFVGYNATEG-------- 487 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GDTG Sbjct: 488 ---------------QGKVIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDTGY 532 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +R + D K G F+HH +V G L + +D + S+NHSATHLL Sbjct: 533 LQSGAVRFDVQDTTKTG-GAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATHLL 591 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + +T A++K++ED VN + +N PV T I Sbjct: 592 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVTPAQIKALEDIVNREVRKNTPVETEI 651 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+SE Sbjct: 652 TDIETAKRKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 707 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L Q Sbjct: 708 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLIKGNRDNLIDKLSAVLERNRQLEKQ 767 Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L + K +DLS ++ ++ + D K L +++D L+ K+ +I+L Sbjct: 768 LEQLQAKAASAAGDDLSSAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 826 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 827 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 876 >gi|209694226|ref|YP_002262154.1| alanyl-tRNA synthetase [Aliivibrio salmonicida LFI1238] gi|208008177|emb|CAQ78320.1| alanyl-tRNA synthetase [Aliivibrio salmonicida LFI1238] Length = 860 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/907 (42%), Positives = 542/907 (59%), Gaps = 68/907 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRRAFLAFFESKGHQIVESSSLVPANDPTLLFTNAGMNQFKDCFLGSEKRSYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ +L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTERLELPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +T+Y+ D+EAF++W K G+ AD+I+RI N DNFW M +TGPCGPC+EI Sbjct: 124 DRLLVTIYETDDEAFEIWNKEMGIPADRIVRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+A Sbjct: 184 FYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRLADGTMEPLPKPSVDTGMGIERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q +NY+ID+F+ LI+ + +V G Y+ + + RV+ DH+RS S+LI DG++P+N Sbjct: 244 AIMQGVHSNYEIDIFQTLIKETAKVVG--YDDLSNQSLRVVADHIRSCSYLIVDGVMPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + L+E+ L+ E Sbjct: 302 EGRGYVLRRIIRRAVRHGNKLGAKGSYFYKLVGPLAEIMGTAGEELKKQQALVEKVLKIE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E FG+TL+RG+V+L+ L +L + +L+G+ FKLYDT+G P D+ D+ R L ID Sbjct: 362 EENFGRTLERGMVILNEALDNL-EGTVLDGETVFKLYDTYGFPADLTNDVARERELT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +A+ EQR RAR A G K+ T F GYD + E Sbjct: 420 EDGFEKAMNEQRQRAREAGQFGTDYNAVIKV-------ESETVFHGYDFTEAKATVLE-- 470 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + C +GE VE +G ++ D TPFYAE+GGQ GD G Sbjct: 471 -IFC--------------------EGEAVETLSAGDDAILILDVTPFYAESGGQSGDAGI 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + +TD QK I H +VE G+L T + +D + R +++NHSATHLL Sbjct: 510 ITVEAGKFVVTDTQKVGNAIGHHGKLVE-GVLSTADRAMAQVDEERRTAITLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD ++ + + EL+ +E VN + N + T + Sbjct: 569 HAALRQVLGEHVTQKGSLVKAESLRFDFSNLEGVKPEELRLVERIVNQQVRLNHAIETDL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A GA AL G KY+D VRV+S+ G S+ LCGG H SSTG+I L I SE Sbjct: 629 MDVDAAKEKGAMALFGEKYDDEVRVLSM-----GEFSTELCGGIHASSTGDIGLFKITSE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I AGIRRIEA+TG+ A + Q D+KL +S K+ + +EI + K Sbjct: 684 GGIAAGIRRIEAVTGEAALDAIESQQKLADKKLHDASSKTKLLE-------KEIQQLKDK 736 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L A L V+D+S K+ + + D+K L+ ++D L+ +I SG+IM+ Sbjct: 737 LA-SQASSDLISQVQDISGVKV-----LITQLDGADNKALRGMVDELKNQIGSGVIMIGN 790 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +S + K ++ VT+DL+ + A +L + A + GG GGGRP MAQ+GG + A+ Sbjct: 791 VS-DDKVGLIAGVTKDLIGQVKAGELVNMVALQV-GGKGGGRPDMAQAGGTDAKALPAAL 848 Query: 890 AGVASFL 896 A V ++L Sbjct: 849 ATVEAWL 855 >gi|56708179|ref|YP_170075.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670650|ref|YP_667207.1| alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis FSC198] gi|81597416|sp|Q5NFW7|SYA_FRATT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123169359|sp|Q14HB9|SYA_FRAT1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56604671|emb|CAG45729.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320983|emb|CAL09112.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis FSC198] gi|282159393|gb|ADA78784.1| Alanyl-tRNA synthetase [Francisella tularensis subsp. tularensis NE061598] Length = 865 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/901 (42%), Positives = 539/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG Y +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEVYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGIGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + + R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGHLNLNDELTARVSDKPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ ++++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSKIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ L A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|319944272|ref|ZP_08018548.1| alanine--tRNA ligase [Lautropia mirabilis ATCC 51599] gi|319742567|gb|EFV94978.1| alanine--tRNA ligase [Lautropia mirabilis ATCC 51599] Length = 882 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/903 (41%), Positives = 544/903 (60%), Gaps = 70/903 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +L+FF+ GH ++ SS ++P +DPTL+F N+GM FK++F G +K Y Sbjct: 1 MMKSAEIRQQYLKFFESKGHTIVASSPVVPHDDPTLLFANAGMNQFKDVFLGFDKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+RAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI+ AW+LLT F L Sbjct: 61 ATTAQKCIRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKQDAIKFAWELLTTVFKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 +L +TVY ED+EA+ +W K G+ AD+I+RI N DNFW M +TGPCGPC+ Sbjct: 121 PPEKLLVTVYAEDDEAYDIWAKQVGVPADRIVRIGDNKGARYASDNFWMMGDTGPCGPCT 180 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G + GG PGS EE G+R+IEIWN+VFMQ+ + E LP+ S+DTGMGLER Sbjct: 181 EIFYDHGPEVAGGPPGSPEEDGDRFIEIWNIVFMQYNRDESGELHPLPRPSVDTGMGLER 240 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT----GMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 +A VLQ +NY+IDLF +L+ A+ +V G G+ + +VI DH+R+ F I D Sbjct: 241 VAAVLQHVHSNYEIDLFVNLLAAAAKVVQDAGGTPETGSPSL--KVIADHIRACCFTIVD 298 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P NEGRGYVLRRI+RRA+ + +G +P + L+PAL EMG AYPEL + + IE Sbjct: 299 GVVPGNEGRGYVLRRIIRRAVRHGYKMGARQPFLYSLVPALVKEMGEAYPELKRDQARIE 358 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E L+ E+ RF +T+ G+ LL+G L+ L ++L+G+ AF+L+DT+G PLD+ D+ R Sbjct: 359 EVLKGEESRFFETIANGMSLLEGALAGLKGKKVLDGETAFRLHDTYGFPLDLTADVCRER 418 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSK 467 G+ +D F A+ QR +ARA G+ SL E G T+F+GYD L Sbjct: 419 GVT-VDEAGFETAMAHQREQARAAGRFKGA--------SLLEYDGETTRFVGYDEL---- 465 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + V A+ G+ +E +G + VV D +PFYAE+GGQ Sbjct: 466 -------------------SAQARVLALYHDGKPAQELKAGDEGVVVLDVSPFYAESGGQ 506 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G G G+R ++D QK ++ HH VE G L+ ++ ++ R++ + NH Sbjct: 507 VGDQGHLQGQGLRFAVSDTQKIQAAVWGHHGRVEEGSLKVGDTVQAQVNTALRQKTTRNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLLH AL +LG HV+Q GS + PD RFD +H+KP+T E++++E VN I N Sbjct: 567 SATHLLHKALRQVLGDHVAQKGSLVDPDHTRFDFSHNKPMTPEEIQAVEAIVNAEIRSNT 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V R M+ ++AIA+GA AL G KY D VRVV V + LCGGTHV+ +GEI + Sbjct: 627 ATVIRQMSYDEAIAAGAMALFGEKYGDVVRVVDVAD------TRELCGGTHVARSGEIGV 680 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I SE + AGIRR++ +TG+ A + + Q L +A+ ++ V RV ++ + Sbjct: 681 FKIASEGGVAAGIRRVDGLTGEGALAWIQQQLATLAEVAAAVRAPVAEVPARVAQLQTQV 740 Query: 768 ----RKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 R+L + A + L L C + + + +D+K L++ +D L+ Sbjct: 741 KDLGRELDRVKASAASSQGQNLAAQATVLPC----GAHLLVTRVDGMDAKALRATVDQLK 796 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQ 876 +++S +++L + K ++ VT DL++ A + L R++A+V GG GGG+P A Sbjct: 797 DQLKSLVVVLASVEGNDKIQLVAGVTPDLVNTVKAGEMLGRVAAQV--GGKGGGKPDFAM 854 Query: 877 SGG 879 +GG Sbjct: 855 AGG 857 >gi|294505017|ref|YP_003569079.1| alanyl-tRNA synthetase [Yersinia pestis Z176003] gi|262363080|gb|ACY59801.1| alanyl-tRNA synthetase [Yersinia pestis D106004] gi|262367006|gb|ACY63563.1| alanyl-tRNA synthetase [Yersinia pestis D182038] gi|294355476|gb|ADE65817.1| alanyl-tRNA synthetase [Yersinia pestis Z176003] Length = 847 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/887 (43%), Positives = 552/887 (62%), Gaps = 62/887 (6%) Query: 28 LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87 ++P NDPTL+FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHH Sbjct: 1 MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60 Query: 88 TFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISG 145 TFFEMLGNFSFG YFK AI AW+LLT E F+L + +L++TVY+ D+EA+ +W G Sbjct: 61 TFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNLPKEKLWVTVYETDDEAYNIWANEVG 120 Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERY 197 + ++IIRI N DNFW M +TGPCGPCSEIFFD G+ I GG PGS+EE G+RY Sbjct: 121 VPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSAEEDGDRY 180 Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257 IEIWN+VFMQF +Q+ LPK S+DTGMGLER+A VLQ +NY+IDLF+ LI A Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIAAVA 240 Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317 VTG + + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ + +LG Sbjct: 241 DVTGATDLSSKSL--RVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298 Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377 E L+ L MG A EL Q + ++E+ L++E+E+F +TL+RGL LLD LS L Sbjct: 299 KETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLKTEEEQFARTLERGLALLDDELSKLT 358 Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437 D L+G+ AF+LYDT+G P+D+ D+ R L +D F QA+E QR RAR S G G Sbjct: 359 GD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFG 415 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 + + SL A+QF GYD ++ + V A+ + Sbjct: 416 AD-----YNSLIRVDSASQFSGYDHVQQ-----------------------HATVTALFR 447 Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557 GE V+E +G++ VV ++TPFY E+GGQ+GD G +TD QK + I H Sbjct: 448 NGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKGELKNATATFSVTDTQKYGQAIG-HV 506 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 I+ G LR S+ +D R ++ +NHSATHLLH AL +LG HV+Q GS + L Sbjct: 507 GILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHLLHAALRNVLGEHVAQKGSLVNDKYL 566 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677 RFD +H + + +++ +ED VN+ I +N+PV T +M + A GA AL G KY+D+VR Sbjct: 567 RFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVR 626 Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 V+++ G S+ LCGGTH S TG+I L I++ES AGIRRIEA+TG+ A + L Sbjct: 627 VLTM-----GDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIALLHQ 681 Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIAD 793 Q + L+ +A +K N+ +V + + R+LQ + ++ Q + S K+ Sbjct: 682 QSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKL-- 739 Query: 794 VNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850 +N + ++S++D+ E L++++D L+ ++ S II+L + + K S+++ VT+DL + Sbjct: 740 INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVL-ATTADDKVSLIVGVTKDLTGKV 798 Query: 851 NAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 A +L A ++ +V GG GGGRP MAQ+GG + A+A V +++ Sbjct: 799 KAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQALPAALASVEAWV 843 >gi|254374194|ref|ZP_04989676.1| alanyl-tRNA synthetase [Francisella novicida GA99-3548] gi|151571914|gb|EDN37568.1| alanyl-tRNA synthetase [Francisella novicida GA99-3548] Length = 865 Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/901 (42%), Positives = 538/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L +MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVNQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +G +D +F Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGFK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQFKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYQDGQLVASTSEQVPAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + Q R + NHSATHLLH AL Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDQPRLATAANHSATHLLHKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L I+SE I +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A + + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRYTFTSENKIIAIKDSLKANDANLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETNIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ L A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|71279113|ref|YP_267790.1| alanyl-tRNA synthetase [Colwellia psychrerythraea 34H] gi|83305842|sp|Q487H5|SYA_COLP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71144853|gb|AAZ25326.1| alanyl-tRNA synthetase [Colwellia psychrerythraea 34H] Length = 876 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/918 (43%), Positives = 555/918 (60%), Gaps = 70/918 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + + + +R FL+FF H+++ SSSL+P ND TL+FTN+GMVPFK++F G E Y Sbjct: 2 IKSTAEVRQAFLDFFATKQHQIVKSSSLVPGNDATLLFTNAGMVPFKDVFLGAETRSYTR 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT E L Sbjct: 62 ATSAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKNDAISYAWEFLTGELGL 121 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPC 172 + +L +TVY DEEAF W+ G+ DKIIRI +DNFWSM +TGPCGPC Sbjct: 122 AKEKLLVTVYATDEEAFSYWRDEVGVPEDKIIRIGDKSANKKYESDNFWSMGDTGPCGPC 181 Query: 173 SEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEIF+D GE I GG PGS E+G+R+IEIWN+VFMQF +Q+ LP SIDTGMGLE Sbjct: 182 SEIFYDHGEDIFGGPPGSPDEDGDRFIEIWNIVFMQFNRQSDGRMDPLPNPSIDTGMGLE 241 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV---TGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 R++ ++Q +NY+ID+F+ LI+ + + + ++++ + RVI DH+RS SFLI D Sbjct: 242 RISAIMQNVHSNYEIDIFQALIKDTAALLDCSDLEHK-----SLRVIGDHIRSCSFLIVD 296 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P+NEGRGYVLRRI+RRA+ + L T L+ +L +MG AYPEL Q + +IE Sbjct: 297 GVVPSNEGRGYVLRRIIRRAIRHGHKLEATGHFFHKLVASLIAQMGEAYPELAQQQAIIE 356 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + LR E+E+FG+TLDRG++LL+ +L++L D I+ GD FKLYDT+G P D+ DI R Sbjct: 357 KLLRIEEEQFGRTLDRGMILLEDILANLSGD-IIKGDDVFKLYDTYGFPADLTADIARER 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L ID F+ A+++QR RA+ S G+ +++ + T F GYD S Sbjct: 416 NLK-IDKDGFDVAMKQQRERAQQASQ-FGTDYNQQL-----KSDQNTAFKGYDNDSYSAT 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + E Q P L +G I V+ D TPFYAE+GGQ+ Sbjct: 469 VVELFNSQDQDPVSQLNSGEQGI---------------------VILDHTPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL----VLTIDYQNRRQLS 584 GD+G DG ++TD K + +A RG T++ L I+ + R + Sbjct: 508 GDSGLLHLDGGVFEVTDTIK------LGNAFAHRGTAHTDVGLNRRVKAEINVERRAAIV 561 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV+Q GS D LRFD +H + +T+ EL +E VN+ I Sbjct: 562 KNHTATHLLHEALRKVLGEHVTQKGSLCDSDKLRFDFSHFEGVTAQELHDVEQMVNNEIR 621 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +N T M E+A A GA AL G KY+D VRVV++ G S LCGG HV+ TG+ Sbjct: 622 RNHAKQTESMYIEEAKAKGAMALFGEKYDDEVRVVTL-----GDFSIELCGGVHVNRTGD 676 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L IVSES I AG+RRIEA+TG A + Q L ++A+ +K N +VE + Sbjct: 677 IGFLKIVSESGIAAGVRRIEAVTGTGALDFINQQTASLTTIAALVKSDVTNASSKVELLI 736 Query: 765 EEYRKLQLIHAKRKLQLNVE---DLSCHKIADVNFMSHIISE---VDSKELKSVMDALQK 818 ++L+ + K +L + DL + I ++N + +I++ V+SK L+ ++D L+ Sbjct: 737 SRSKQLEKEIGQLKQELAAQAGSDLVNNTI-EINGVKVLIADLGSVESKALRGMVDELKN 795 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K+QSG+IML + K ++ VT+DL+ R A DL + A+ + GG GGGRP MAQ+G Sbjct: 796 KMQSGVIMLA-TANGPKVGLIAGVTKDLVGRVKAGDLVNMVAQQV-GGKGGGRPDMAQAG 853 Query: 879 GPNGNKADQAIAGVASFL 896 G A+ V+++L Sbjct: 854 GSQPENITSALESVSAWL 871 >gi|205830254|sp|B1JCG9|SYA_PSEPW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 4 AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 V+Q +NY+IDLF++L+ A+ + G +G + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVMQHVHSNYEIDLFQNLLSAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K +++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + AT F+GY+ G Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDTATDFVGYNATEG-------- 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GDTG Sbjct: 465 ---------------QGKVIALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDTGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +R + D K G F+HH +V G L + +D + S+NHSATHLL Sbjct: 510 LQSGAVRFDVQDTTKTG-GAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + +T A++K++ED VN + +N PV T I Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVTPAQIKALEDIVNREVRKNTPVETEI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+SE Sbjct: 629 TDIETAKRKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L Q Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLIKGNRDNLIDKLSAVLERNRQLEKQ 744 Query: 772 LIHAKRKLQLNV-EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L + K +DLS ++ ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAGDDLSSAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853 >gi|205830482|sp|Q3SLA9|SYA_THIDA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 872 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/907 (41%), Positives = 539/907 (59%), Gaps = 56/907 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S+IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GMV FK++FTGQ+ Y + Sbjct: 4 SAIRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKLPSEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W G+ +I+RI N DNFW+M +TGPCGPC+EIF+ Sbjct: 124 LWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNFWAMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G + GG PGS E+G+RYIEIWN VFMQF + LPK S+DTGMGLER++ V Sbjct: 184 DHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPLPKPSVDTGMGLERISAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q +NY+IDLF+ LI A+ + T GNN + +VI DH+R+ SFLI DG++P NEG Sbjct: 244 MQHVHSNYEIDLFQALIAAAARETNTHDLGNNSL--KVIADHIRACSFLIVDGVIPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG ++P L MG AYPEL++A+ + + LR E+E Sbjct: 302 RGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILRQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF +T++ G+ +L+ L L + +G++AFKL+DT+G PLD+ DI G+A +D Sbjct: 362 RFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLTADICREAGVA-VDTA 420 Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +F+ A+ Q+++AR A LG+G L AT F GYD L Sbjct: 421 AFDAAMARQKAQARGAGKFKLGAG--------LDYAGEATTFHGYDTL------------ 460 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 461 -----------AREASVLALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRGTLQ 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 ++ D K +F HH +V+ G L S++ +D R + NHS THL+H Sbjct: 510 SKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTHLMHK 569 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + + RFD P+T+A+++ +E VN I N P R+M Sbjct: 570 ALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQARVMG 629 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 EDA +GA L G KY D VRV+ + S LCGGTHV+ TG+I L IVSES Sbjct: 630 IEDAQKTGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVARTGDIGLFKIVSESG 683 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773 + AG+RR+EAITG A ++L ++++++ A+ LK + ++ + + R L+ L Sbjct: 684 VAAGVRRVEAITGDNALAYLQAREQEIQQAAAALKAHPAELGAKLAQTLDHVRALEKDLE 743 Query: 774 HAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL + D + AD+N ++ + +D+K L+ D L+ K++S ++L G Sbjct: 744 RLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETADKLRDKLKSCALVL-GT 802 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K S++ VT D+ + A +L + A + GG GGG+P +A +GG + A+A Sbjct: 803 VADGKVSLIAAVTPDVTAKIKAGELVNVVAAQV-GGKGGGKPDLAMAGGTDPGALPAALA 861 Query: 891 GVASFLK 897 V ++++ Sbjct: 862 SVEAWVQ 868 >gi|77164443|ref|YP_342968.1| alanine--tRNA ligase [Nitrosococcus oceani ATCC 19707] gi|254433958|ref|ZP_05047466.1| alanyl-tRNA synthetase [Nitrosococcus oceani AFC27] gi|123594696|sp|Q3JCK8|SYA_NITOC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|76882757|gb|ABA57438.1| alanyl-tRNA synthetase [Nitrosococcus oceani ATCC 19707] gi|207090291|gb|EDZ67562.1| alanyl-tRNA synthetase [Nitrosococcus oceani AFC27] Length = 873 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/910 (42%), Positives = 544/910 (59%), Gaps = 58/910 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + +R FL++F+ HE++PS L+P NDPTL+FTN+GMV FK +F G+E Y Sbjct: 1 MKSSAELRKIFLDYFRHQSHEIVPSGPLVPANDPTLLFTNAGMVQFKEVFLGREVRAYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ L Sbjct: 61 AASAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGYAWELLTEVLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL++TV+ ED+EA +W + G+S ++ R DNFWSM ETGPCGPCSEIF+D G Sbjct: 121 PPERLWVTVFKEDDEAANIWLQEIGVSPERFSRCGAEDNFWSMGETGPCGPCSEIFYDHG 180 Query: 181 ECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 I GG PGS E EG+RY EIWNLVFMQ+++ + LP+ S+DTGMGLER+A V+Q Sbjct: 181 PEIEGGPPGSPEQEGDRYTEIWNLVFMQYDRGKEGRLSPLPRPSVDTGMGLERLAAVMQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF++LI A ++G++ + + RVI DH+RS FLI DGI P+NEGRGY Sbjct: 241 VHDNYNIDLFRNLIAAITALSGIQNQEQTSL--RVIADHIRSCVFLIVDGIQPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG +P L+ L EMG AYPEL + + +E L+ E+ERF Sbjct: 299 VLRRIIRRAIRHGHKLGLRDPFFYRLVEPLVQEMGEAYPELFRLQSQVERVLKLEEERFN 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL +L+ + L D ++ G+ F+LYDT G P+D+ DI R L +D+ F Sbjct: 359 ETLEQGLKILEQDIIDL-SDAVIPGETIFRLYDTFGFPVDLTADIARERKLT-LDMKGFE 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA-------TQFIGYDLLRGSKFMKED 472 QA+ +QR RARA S K +YG+ T+F GY+ LRG Sbjct: 417 QAMAKQRKRARAAS-------------RFKIEYGSELQMDLETEFTGYEQLRG------- 456 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 G + + + + E VE+ +G+ VV D+TPFYAEAGGQ+GD G Sbjct: 457 -------------EGQIAALFRLAETMETVEQLSAGESGMVVLDRTPFYAEAGGQVGDRG 503 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G +TD K+ VH V G LR S+ +D + R +NHSATHL Sbjct: 504 TLRGSNGLFNVTDTHKQG-AAHVHLGEVRLGQLRVGDSIQSEVDRKYRTPTRLNHSATHL 562 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG V Q GS + D LRFD +H + + S +L+ IE VN I NLPV T+ Sbjct: 563 LHAALREVLGEGVIQKGSLVASDRLRFDFSHLEAVQSGQLRQIEHLVNAKIRANLPVETQ 622 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM + A+ +G AL G KY ++VRV+ + G S LCGGTHV TG+I L I++ Sbjct: 623 IMPLQQALDAGVMALFGEKYGEQVRVLRM-----GDFSMELCGGTHVDRTGDIGLFKIIN 677 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYR 768 E + AGIRRIEA+TG+ A S + + L++L LK S+ + V + ++ ++ + Sbjct: 678 EMGVAAGIRRIEAVTGEAALSWVEEGEVCLEALMGRLKASRNSAVDKLEQLQQQTRQQEK 737 Query: 769 KLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +LQ + AK + + +I + ++ I VDSK L++ +D L+ K+ + ++L Sbjct: 738 ELQRLKAKLATTGGADLSIQAQEIRGIKVLAARIDGVDSKTLRATVDQLKGKLITAAVVL 797 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K ++ VT + R A DL A+ + GG GGGRP MAQ+GG N +K D Sbjct: 798 -GTVVEDKVVLIAGVTNNATSRIKAGDLVNFVAEQV-GGRGGGRPDMAQAGGRNPDKLDA 855 Query: 888 AIAGVASFLK 897 A+ V +++ Sbjct: 856 ALDLVPKWVE 865 >gi|74316571|ref|YP_314311.1| alanyl-tRNA synthetase [Thiobacillus denitrificans ATCC 25259] gi|74056066|gb|AAZ96506.1| alanyl-tRNA synthetase, class IIc [Thiobacillus denitrificans ATCC 25259] Length = 886 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/907 (41%), Positives = 539/907 (59%), Gaps = 56/907 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S+IR +FL+FF GH ++PSSSL+P NDPTL+FTN+GMV FK++FTGQ+ Y + Sbjct: 18 SAIRQSFLDFFASKGHTVVPSSSLVPGNDPTLLFTNAGMVQFKDVFTGQDTRPYSRAVSS 77 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT L + Sbjct: 78 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKYAWEYLTTVLKLPSEK 137 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W G+ +I+RI N DNFW+M +TGPCGPC+EIF+ Sbjct: 138 LWVTVYAEDDEAYDIWHNDVGVPKARIVRIGDNKGARYASDNFWAMGDTGPCGPCTEIFY 197 Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G + GG PGS E+G+RYIEIWN VFMQF + LPK S+DTGMGLER++ V Sbjct: 198 DHGPDVAGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGTMHPLPKPSVDTGMGLERISAV 257 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q +NY+IDLF+ LI A+ + T GNN + +VI DH+R+ SFLI DG++P NEG Sbjct: 258 MQHVHSNYEIDLFQALIAAAARETNTHDLGNNSL--KVIADHIRACSFLIVDGVIPGNEG 315 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG ++P L MG AYPEL++A+ + + LR E+E Sbjct: 316 RGYVLRRIIRRAIRHGYKLGARAAFFHRIVPDLGIAMGEAYPELVKAQTRVMDILRQEEE 375 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF +T++ G+ +L+ L L + +G++AFKL+DT+G PLD+ DI G+A +D Sbjct: 376 RFFETIEHGMGILESELKKLVAGGVFDGELAFKLHDTYGFPLDLTADICREAGVA-VDTA 434 Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +F+ A+ Q+++AR A LG+G L AT F GYD L Sbjct: 435 AFDAAMARQKAQARGAGKFKLGAG--------LDYAGEATTFHGYDTL------------ 474 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 475 -----------AREASVLALYKDGSAVGELKEGDSGVVVLDHTPFYAESGGQVGDRGTLQ 523 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 ++ D K +F HH +V+ G L S++ +D R + NHS THL+H Sbjct: 524 SKQGAFEVEDTLKIQAQVFGHHGVVKTGSLAVGDSVLARVDETARARTMRNHSVTHLMHK 583 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + + RFD P+T+A+++ +E VN I N P R+M Sbjct: 584 ALREVLGEHVQQKGSLVDSEKTRFDFVQPSPMTAAQIREVEARVNAEILVNTPTQARVMG 643 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 EDA +GA L G KY D VRV+ + S LCGGTHV+ TG+I L IVSES Sbjct: 644 IEDAQKTGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVARTGDIGLFKIVSESG 697 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773 + AG+RR+EAITG A ++L ++++++ A+ LK + ++ + + R L+ L Sbjct: 698 VAAGVRRVEAITGDNALAYLQAREQEIQQAAAALKAHPAELGAKLAQTLDHVRALEKDLE 757 Query: 774 HAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL + D + AD+N ++ + +D+K L+ D L+ K++S ++L G Sbjct: 758 RLKSKLAASAGDELVAQAADINGVKVLAARLDGIDAKGLRETADKLRDKLKSCALVL-GT 816 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K S++ VT D+ + A +L + A + GG GGG+P +A +GG + A+A Sbjct: 817 VADGKVSLIAAVTPDVTAKIKAGELVNVVAAQV-GGKGGGKPDLAMAGGTDPGALPAALA 875 Query: 891 GVASFLK 897 V ++++ Sbjct: 876 SVEAWVQ 882 >gi|68171547|ref|ZP_00544925.1| Alanyl-tRNA synthetase, class IIc [Ehrlichia chaffeensis str. Sapulpa] gi|67999031|gb|EAM85704.1| Alanyl-tRNA synthetase, class IIc [Ehrlichia chaffeensis str. Sapulpa] Length = 887 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/896 (42%), Positives = 545/896 (60%), Gaps = 57/896 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 VS++R +F++FF KNGH++ PSS LI +DP+L+FTN+GMV FK +FT T+ Sbjct: 7 VSNLRKSFIDFFAKNGHQVFPSSPLILKDDPSLLFTNAGMVQFKQMFTNPNNANVNTATS 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+ AW+ + KE L + Sbjct: 67 SQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGSYFKEGAIEFAWNFVIKELSLSKD 126 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY TVY +D+EAF LWKKISG+S +II+ITT+DNFWSM TGPCGPCSEIF+D G+ + Sbjct: 127 RLYFTVYHDDQEAFDLWKKISGVSDSRIIKITTSDNFWSMGNTGPCGPCSEIFYDYGDNV 186 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GGLPG+ EE G R+ EIWNLVFMQ++++ E +LPK IDTGMGLER+A V+Q + Sbjct: 187 KGGLPGTPEEDGARFTEIWNLVFMQYDRKLDGELCVLPKKCIDTGMGLERIAAVMQGVHD 246 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYDI LFK LI AS++ +G N + HRVI DH+RS++FLIA+G+ P NEGR Y+LR Sbjct: 247 NYDISLFKALIAASKEQSG---NSTNELAHRVIADHVRSAAFLIAEGLTPGNEGRNYILR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPAL-----CTEMGSAYPELIQAKLLIEETLRSEDER 357 RI+RRA Y +L Y + LM + P L C M YPELI AK LI L+ E+E Sbjct: 304 RIIRRAARYVYMLKYDDALMYKVFPTLIDEESCGYMADYYPELIHAKDLIMSILKIEEEN 363 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TL R L LL+ L +L +IL+GD+ FKLYDT+G P+DI DI+ +G+ D Sbjct: 364 FKDTLVRALPLLEKELMNLSSGDILSGDIVFKLYDTYGFPVDITLDIIKEKGVK-FDEQG 422 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + +Q+ R++ HS+ E+ W +KE+ G+T+ +GY+ + D K Sbjct: 423 FYDNMNKQKERSKLNHSIKSDQQLKEEFWVDIKERCGSTKSVGYE--------RYDTK-- 472 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533 ++++ + + VE A G KV ++ D TPFYAE+GGQ GD G Sbjct: 473 ------------ATVLSIVCGGDKNVEIANVGDKVSILLDITPFYAESGGQKGDVGIFNV 520 Query: 534 --------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D I ++ D +K + +++H I+++G L + ID + RR L Sbjct: 521 IVRQEKELFANDNIA-EVIDTKKVLDTLYIHECIIKQGSLMVGDVIFAKIDCERRRNLCA 579 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH+ L + + S + Q GS ++ + LRFD ++ +T +L IED + +I+ Sbjct: 580 NHSATHLLHYVLKSEIDSSIMQKGSLVSDEKLRFDFSYGVALTKEQLTLIEDKMYSLISG 639 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N PV++ + + +DA+A GA AL KY + VRVVS++ S LC GTHV T E Sbjct: 640 NNPVISHVCDLKDAVAGGAVALFTEKYEEHGVRVVSIK------DSKELCCGTHVKYTSE 693 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I IVSE+SI GIRRIEA+TG+ A + Q++ L S+A +KV NV+ +++++ Sbjct: 694 IGCFKIVSEASIACGIRRIEAVTGRYAIDYFRQQEKMLNSIAESVKVPVDNVLVQIDKLD 753 Query: 765 EEYRKLQLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ ++L+ + + N++ ++ KI +V+F+ +S + ++ ++ K + + Sbjct: 754 KKNQELEQKLSDVYFDMINLQGVNTEKIGNVDFLYSNLSNIPVNVMRKFIN---KHLTAD 810 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 I+L + ++ V L + AVD ++ ++ GGG +AQ G Sbjct: 811 RIILFANVVGQNVVCVVGVGNSLHCKVKAVDFVKMIGTMV-KSKGGGNAQLAQING 865 >gi|88607771|ref|YP_505615.1| alanyl-tRNA synthetase [Anaplasma phagocytophilum HZ] gi|123494530|sp|Q2GJ36|SYA_ANAPZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|88598834|gb|ABD44304.1| alanyl-tRNA synthetase [Anaplasma phagocytophilum HZ] Length = 876 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/879 (42%), Positives = 527/879 (59%), Gaps = 52/879 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S+VS IR FL+FF+K GH PS+ LI D +L+FTN+GMVPFK F V A Sbjct: 4 SSVSGIREAFLDFFEKQGHTRYPSAPLIAEGDASLLFTNAGMVPFKQRFITGVSDVKTA- 62 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE AI+LAW +TKE L Sbjct: 63 TTSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKETAIELAWRFVTKELGLS 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ITVY ED+EAF +WKKI+G + KIIRI+T+DNFWSM +TGPCGPCSEIF+D G+ Sbjct: 123 KERLWITVYSEDQEAFDIWKKITGYTDHKIIRISTSDNFWSMGDTGPCGPCSEIFYDYGD 182 Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PGGLPG+ E +G RY EIWNLVFMQ+ + E LP+ IDTGMGLER+A V+Q Sbjct: 183 GVPGGLPGTDESDGARYTEIWNLVFMQYNRDESGELHKLPRGCIDTGMGLERIAAVMQGV 242 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY+ D+F+ +I S + G ++ + HRVI DH+R++SFLIA+G+ P NEGR YV Sbjct: 243 CDNYETDMFQAIIDRSRSIFGSH---DHPIAHRVIADHVRAASFLIAEGLTPGNEGRNYV 299 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355 LRRI+RRA+ Y + + + ++P L E MG+AYPE+++A+ I TL+ E+ Sbjct: 300 LRRIIRRAVRYIYQIVGDKFSLHEVVPVLTREGSAGYMGNAYPEIVKAEQSIVSTLKIEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 + F TL RG +L+ + L E+L+G++AFKLYDT+G PLDI D+ RGL D Sbjct: 360 DGFADTLRRGTGILEQEIRGLKSGEVLSGEIAFKLYDTYGFPLDITLDVAKERGLK-FDE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ + +Q+ ++R H GSG + + K+ AT F+GY+ R Sbjct: 419 DGFNRCMAKQKEQSRKH--WKGSGEAQTASSHILNKHKATSFVGYENHR----------- 465 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--- 532 V S+VK I GE V G++ V D TPFYAE+GGQ GDTG Sbjct: 466 ------------VKSMVKEIFCSGEAVTSMGEGEEGIAVLDITPFYAESGGQEGDTGLLK 513 Query: 533 -CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++ D K+ + +H V RG L+ + +D Q R +L NHSATH Sbjct: 514 VVTTKCGSVAEVVDT-TKSNNVHLHKIRVIRGTLKVGDVVEAVVDKQRREKLRANHSATH 572 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +L L T++G + Q GS + D LRFD +H+ P+T +L+++E VN I N PV+ Sbjct: 573 ILQSVLRTLIGEGIQQKGSLVAADKLRFDFSHALPLTKEQLRTVEMEVNRQIMANQPVII 632 Query: 652 RIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + EDA+ GA AL G KYND+ VRVVS+ S LCGGTHV TG+I I Sbjct: 633 DHCSLEDAVQEGAIALFGEKYNDQNVRVVSMG------SSKELCGGTHVRFTGDIGAFRI 686 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE+ I G+RRIEAITG S + E L+ +A L V V+ ++++++ E R+ Sbjct: 687 ISETGIAQGVRRIEAITGHEVVSSMNRDSESLQQVAECLSVPVDQVIEKLKKVFVEQRE- 745 Query: 771 QLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 I+ K SC K +V + + + E + ++ V +++K+ + ++ + Sbjct: 746 --INKKMATICYTHMNSCAKCIEVGSEIKLYVGEFSNIPVEVVASYVKEKMHTNEVLAIS 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868 + K+ + ++ V E + R A D+ + ++ G GGG Sbjct: 804 TTDGKRTTFIVGVGESAIKRIKATDIVKALQQIQGKGGG 842 >gi|302389912|ref|YP_003825733.1| alanyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646] gi|302200540|gb|ADL08110.1| alanyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646] Length = 880 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/916 (41%), Positives = 560/916 (61%), Gaps = 59/916 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR FL FF+ GH +PSSSL+P NDPTL+FTN+GM FK++F G +K + Sbjct: 1 MMTSSEIREKFLSFFESKGHVRVPSSSLVPYNDPTLLFTNAGMNQFKDVFLGLKKLPFTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDLD+VGRT RHHTFFEMLGNFSFG YFK AI AW+ LT+ L Sbjct: 61 ATTAQKCVRAGGKHNDLDSVGRTARHHTFFEMLGNFSFGDYFKRDAIAYAWEFLTEVLQL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RL++++Y+ D+EAF LW++++ + +KIIR+ DNFW+M +TGPCGPCSEI+ D+G Sbjct: 121 PKERLWVSIYENDDEAFYLWQEVANIPPEKIIRLGEKDNFWAMGDTGPCGPCSEIYIDRG 180 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E C + +R+ E+WNLVFMQ+ + LP+ SIDTGMGLER+ATV+ Sbjct: 181 EEHRCNSPECKIGVCDCDRWRELWNLVFMQYNRDEHGNLTPLPRPSIDTGMGLERIATVM 240 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296 Q +NYD DL + +I E +TG KY G+ RVI DH+R+ +FLI+DG+LP NEG Sbjct: 241 QNVYSNYDTDLLRPIIAFVENMTGKKYYGDERGFPFRVIADHIRAITFLISDGVLPGNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 R YVLRRI+RRA + + L P + ++P + + MG AYPE+ + + I+ + E+E Sbjct: 301 RSYVLRRILRRAARFGKELDLNRPFLYKIVPVVVSLMGDAYPEIKKNQDYIQRVTKFEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL+ GL LL ++ L + +++ G++AF LYDT+G PLD+ +D+ +G ID Sbjct: 361 RFHETLNDGLKLLFEGMAELEEKNQKVIPGEMAFMLYDTYGFPLDLTEDVAREKGF-NID 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY------GATQFIGYDLLRGSKF 468 +F + +E QR +A+A K + + E Y T F+GYD Sbjct: 420 REAFEELMERQRKKAKA---------ARKEEYPVNELYEILAPMEPTIFVGYD------- 463 Query: 469 MKEDRKVLCQKPPIDL-TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 L + ++L +G +V+A + GEI+ +V D+TPFY EAGGQ Sbjct: 464 ------CLSTEAQVELIISGKEPVVEADEKAGEII----------LVLDRTPFYGEAGGQ 507 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG + ++ D Q+ +G H VE+G +R + + ++D RR ++ NH Sbjct: 508 VGDTGIIENENFTFRVRDTQRTPDGKIYHIGKVEKGFIRLKERVTASVDEARRRDIARNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLLH AL +LG HV+Q GS + D LRFD +H +T E+K IED VN I +L Sbjct: 568 SATHLLHRALKDVLGEHVNQAGSLVAHDRLRFDFSHFAALTEDEIKKIEDLVNKAILDDL 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PVV E+A +GA AL G KY ++VR+VS+ G +S LCGGTHVSST +I L Sbjct: 628 PVVVEETTVEEAQKAGAIALFGEKYGEKVRMVSM-----GNYSKELCGGTHVSSTSKIGL 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I+SESS+ AG+RRIEA+TG ++ + L S LK ++ +VEE++E Sbjct: 683 FKIISESSVGAGVRRIEAVTGWNLLNYTRENLAIISDLVSLLKSKPQDLTAKVEELFETI 742 Query: 768 -RKLQLIHAKRKLQLN--VEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 R + + + R+ +N VE+++ KI D+N +S + + +L+++ D L++KI+S Sbjct: 743 KRNERQVESLRQRLINTRVEEIAAGKILLGDINVISAKVDDASMDDLRNISDVLRQKIKS 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 GI++L G + + ++ VT+DL+++ ++A + + +A+V GG GGGRP AQ+GG Sbjct: 803 GIVVL-GSTSGDRVFLVCSVTKDLVEKGYHAGKIVKQAAEV-AGGSGGGRPDFAQAGGKY 860 Query: 882 GNKADQAIAGVASFLK 897 +K +QA+ +K Sbjct: 861 PDKLEQALKVAVDVIK 876 >gi|118602853|ref|YP_904068.1| alanyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|205830196|sp|A1AXE0|SYA_RUTMC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118567792|gb|ABL02597.1| alanyl-tRNA synthetase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 865 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/903 (41%), Positives = 548/903 (60%), Gaps = 52/903 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL++F+ GH + S+SLIP ND TL+F N+GMV FK++F+G EK Y +V Sbjct: 4 AQIRQKFLDYFESKGHTIESSASLIPHNDKTLLFVNAGMVLFKDVFSGVEKRPYMRAVSV 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LTKE +L + + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIYYAWEFLTKELNLPKEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+++V++ED+EA +W G ++I R T DNFW M +TGPCGP SEIF+D GE I Sbjct: 124 LWVSVFEEDDEAENIWINEIGFPKNRISRCGTKDNFWQMGDTGPCGPSSEIFYDYGEHIA 183 Query: 185 GGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PG + E+G+RYIEIWNLVF QF++Q L +DTGMGLER+A VLQ K NN Sbjct: 184 GGPPGHADEDGDRYIEIWNLVFTQFDKQEDGHLKPLAVPCVDTGMGLERLAAVLQHKNNN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPANEGRGY 299 YD D F+ L++A + + + NNI N+ RVI DH+RS++F+I DG+ P+NEGRGY Sbjct: 244 YDTDGFQSLVKA---IVNLTPKSNNIKNNNASVRVIADHIRSTAFMIVDGVNPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RR + + +G + L P L E AYPEL QA +E+ L+ E++RF Sbjct: 301 VLRRIIRRGIRHGHKMGIDKVFFYRLAPVLALEFKDAYPELKQALPKVEKVLKREEQRFS 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLD+G+ LL+ +++L EI +G FKLYDT+G P+D+ DI R L ID++ F Sbjct: 361 QTLDQGMRLLEDAITNLNGSEI-DGKTVFKLYDTYGFPIDLTADIARERHLT-IDMLGFE 418 Query: 420 QALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + QR RAR A + + I G T+F+GY+ L Sbjct: 419 FEMTRQRDRARQAGDFKISKKNVDII--------GVTEFLGYEQLE-------------- 456 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 +SSI+ A+V+ ++VEE +G+ VV Q+ FYAE+GGQ+GD+G Sbjct: 457 --------NISSIL-ALVKNSKLVEEIKAGEYGIVVLAQSSFYAESGGQVGDSGVLSNAK 507 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 I ++ K+ G+F H+ ++ +G+L+ ++ +D ++R+ ++ NHSATHLLH AL Sbjct: 508 IEFKVDHTNKQKSGVFEHYGVLNKGVLKVGDTIQANVDKKSRKCIARNHSATHLLHAALR 567 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG V+Q GS + + LRFD +H + IT +++ IE +N I N V T I+N E+ Sbjct: 568 IVLGETVTQKGSLVDSEKLRFDFSHDEVITKSDINKIEGMINRKILGNTKVHTDIINIEN 627 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A AL G KY+D VRV+++ +D V LCGGTHV G+I L I SES + A Sbjct: 628 AKKKDAIALFGEKYSDTVRVLTMGKDDFSVE---LCGGTHVKQLGDIGLFRITSESGVSA 684 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776 G+RRIEA+TG A L ++ K + VV +V + ++ ++L Q+ + Sbjct: 685 GVRRIEALTGYDAYQFDNQMQNSLSEISQMTKSNNAQVVEKVTQFIKQQKELEEQITIFQ 744 Query: 777 RKLQLNV-EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 ++L N +DL ++ ++ +S ++ K+L+++ D L+ K+ S +I+L +S + Sbjct: 745 KQLTSNQGDDLIGQVQEVRNIKLLSTVVEGSSGKDLRNIADKLKDKLGSAVIVLAVVSND 804 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K S+++ VT+DL R+ AV + A+ + GG GGGRP MAQ GG +A+A V Sbjct: 805 -KVSLVVGVTKDLTKRYQAVKILNYVAEQI-GGKGGGRPDMAQGGGTQPEYLAKALASVK 862 Query: 894 SFL 896 S + Sbjct: 863 SLI 865 >gi|254369401|ref|ZP_04985413.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC022] gi|157122351|gb|EDO66491.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica FSC022] Length = 865 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/901 (42%), Positives = 539/901 (59%), Gaps = 47/901 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R F+ +F+ H PSSSLIP D TL+FTN+GMV FK++F G EK + Sbjct: 1 MITTKELRNKFINYFESKNHSHQPSSSLIPFGDDTLLFTNAGMVQFKDVFLGIEKKDFSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 61 AVTVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L++T+Y D+EAF +W K GL+ ++II I ++DNFWSM +TGPCGPC+EIF+D G Sbjct: 121 PVEKLWVTIYASDDEAFDVWHKHIGLAKERIIHIDSSDNFWSMGDTGPCGPCTEIFYDHG 180 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 181 EDVAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGY Sbjct: 241 VHSNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E+E F Sbjct: 299 VLRRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFL 358 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KT++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 359 KTIENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFL 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 417 AQMQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL--- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 462 --------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGF 507 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + DVQK E I +H + +G L L + + R + NHSATHLL+ AL Sbjct: 508 EFVVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKL 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A Sbjct: 567 VLGGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G Sbjct: 627 KSLGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K Sbjct: 682 VRRIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKK 741 Query: 780 QL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 +L + D+ I D+ + + VD K L++ +D + K + +I ++ + K Sbjct: 742 ELLSGSSNDIKETSIGDIKVVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKV 800 Query: 837 SVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 +I V+ L A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F Sbjct: 801 QFVIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKF 858 Query: 896 L 896 + Sbjct: 859 I 859 >gi|90416725|ref|ZP_01224655.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2207] gi|90331478|gb|EAS46714.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2207] Length = 864 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/893 (43%), Positives = 554/893 (62%), Gaps = 51/893 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL ++ H ++PSSSL+P NDPTL+FTN+GMV FK++F G EK Y + Sbjct: 4 ADIRDAFLNYYASKQHSIVPSSSLVPGNDPTLLFTNAGMVQFKDVFLGAEKRDYNRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT+ L + R Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWEFLTEVLKLPKER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+ITV+ D+EA +W G+ +++ R+ DNFW M +TGPCGP +EIF+D GE IP Sbjct: 124 LWITVHISDDEAADIWVNEIGIDPNRLSRL-DEDNFWQMGDTGPCGPSTEIFWDHGEDIP 182 Query: 185 GGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS ++ +RYIEIWNLVFMQFE+ + + LPK SIDTGMGLER+A V+Q NN Sbjct: 183 GGPPGSPDDDLDRYIEIWNLVFMQFERDSTGKMTPLPKPSIDTGMGLERVAAVMQGVHNN 242 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 YDIDLF+HLI+A+ ++ G+ N + +V+ DH+RS +FL+ DG++P+NEGRGYVLRR Sbjct: 243 YDIDLFQHLIKAAAKIIGVTDLAENSL--KVVADHIRSCAFLVVDGVVPSNEGRGYVLRR 300 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG + L+ +L MG AYPEL+ + I T++ E+E+F +TLD Sbjct: 301 IIRRALRHGHNLGASGSFFHKLVVSLGEVMGEAYPELLSMQQEIIVTIKKEEEQFARTLD 360 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +G+ +L+ L +L ++ L G++ F+LYDT G P D+ DI RG + +D+ + + +E Sbjct: 361 KGMGVLEAALENLTAEQ-LPGELIFQLYDTFGFPTDLTNDIARERGYS-MDMEGYEECME 418 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR+RAR+ S G +E I G+T+F+GY+ L Sbjct: 419 AQRARARSASQ-FGLDYSESIRVE-----GSTEFVGYNSLEH------------------ 454 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S+ V A+ GE V A +V V+ TPFYAE+GGQ+GD+G ++++ Sbjct: 455 -----SADVVALYSAGEEVSAAGMDAEVAVILGSTPFYAESGGQVGDSGYLQTASAKIEV 509 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 TD +K E +H V G L ++ T+D R ++NHSATHLLH AL ILG Sbjct: 510 TDCRKAGEH-HLHIGKVLSGELNVGDAVTATVDCSVRTATALNHSATHLLHSALQQILGE 568 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV+Q GS + LRFD +H + I++ +++ IE VN I +N PV T +M+ ++A+ G Sbjct: 569 HVNQKGSLVDSQRLRFDFSHGESISAQQIRDIEHRVNREILRNTPVQTDVMSMDEAVEKG 628 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY VRV+S+ GG S LCGGTH + TG+I LL I +ESS+ AG+RRI Sbjct: 629 AMALFGEKYGSEVRVLSM----GGDFSVELCGGTHANRTGDIGLLKISAESSVSAGVRRI 684 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKL-Q 780 EA+TG+ A ++ + + +A+ L+ ++ +V + ++ E+ RKLQ + K KL Sbjct: 685 EAVTGEAAIAYCDALQDTVSEMANVLRAARHSVADKARQVVEDNRKLQKEIDALKSKLAN 744 Query: 781 LNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + DL +I + +S ++ D+K L+ V D ++ K+QSG+ ML + + KA++ Sbjct: 745 ASGNDLMAGLREINGFSVLSTVVEGADAKSLRGVADQVRSKLQSGVFMLAAVDGD-KAAL 803 Query: 839 LIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + VT+DL D+ A DL + ++A+V G GGGR MAQ G G+ + A A Sbjct: 804 VAGVTQDLTDKLKAGDLLKYVTAQV--DGKGGGRADMAQ--GAAGSTVNLAAA 852 >gi|220931419|ref|YP_002508327.1| alanyl-tRNA synthetase [Halothermothrix orenii H 168] gi|219992729|gb|ACL69332.1| alanyl-tRNA synthetase [Halothermothrix orenii H 168] Length = 876 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/904 (42%), Positives = 553/904 (61%), Gaps = 56/904 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 ++ +R +L+FF+ GH +LPS+ LIP NDP+L++ N+GM PFK F G++KP Sbjct: 2 VTTSDELRKAYLDFFKDRGHLVLPSAPLIPRNDPSLLWINAGMAPFKPYFDGRKKPPKTR 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 ++T QKC+R ND++NVG+T RH TFFEMLGNFSFG YFKE AI+ AW+ +T+ +L Sbjct: 62 ISTSQKCIRT----NDIENVGKTARHLTFFEMLGNFSFGDYFKEEAIEWAWEFVTRVLNL 117 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 ++ RL+IT+Y +D+EAFK+W G+ ++I+R+ DNFW + TGPCGPCSEI +D+G Sbjct: 118 EENRLWITIYKDDDEAFKIWHDKVGVPENRIVRMGKKDNFWEIG-TGPCGPCSEIHYDRG 176 Query: 181 ECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E SSE EG+R++EIWNLVF Q+ + E LP+ +IDTGMGLER+A+ Sbjct: 177 EE----FGNSSEDVIGGEGDRFLEIWNLVFTQYNRTEDGEYLSLPQKNIDTGMGLERVAS 232 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 +LQ +N++ DL K +I Q +G++Y V RVI DH+R+ + I DG+LP+NE Sbjct: 233 LLQGVNSNFETDLLKPIINFVSQDSGVQYTEGQRVPFRVISDHIRAVTMAIHDGVLPSNE 292 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYV+RR++RRA+ Y L Y EP + ++P + M YPEL + + + ++SE+ Sbjct: 293 GRGYVIRRLLRRAVRYGGKLNYEEPFLYKIVPVVVDIMSGGYPELKEKEEHVSSVVKSEE 352 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TL++GL +L+ ++ + ++IL+G AFKLYDT+G PLD+ +D+L G + Sbjct: 353 ERFFQTLEQGLNILNEMMEEMKDKGEKILSGKNAFKLYDTYGFPLDLTRDVLAEHGYK-V 411 Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTT-EKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F + +E+QR RAR +G SGT E I+ L+E+ G T+F GY L Sbjct: 412 DEDVFTREMEKQRERARQARADVGFSGTDGEGIYKELREELGETEFTGYRSL-------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + + IV IV+ G+ VE +G+K E++ + TPFYA GGQ+GD Sbjct: 464 --------------SNTTRIV-GIVKDGQPVESLNNGEKGEIILNVTPFYARGGGQVGDK 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G I R ++ D +KK G+ VH+ VE+G R + + +D + R ++ NHS TH Sbjct: 509 GILIDSEHRARVYDTRKKG-GLTVHYTEVEKGEFRIDQVVEARVDEELRYNIARNHSTTH 567 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH L +LG HV+Q+GS + PD LRFD +H P+T E+ IED VN+ I NLPV Sbjct: 568 LLHKTLKEVLGDHVNQSGSLVAPDRLRFDFSHYAPLTEEEINRIEDTVNEKILSNLPVEI 627 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M E A GA AL G KY VRVV + G +S LCGGTHV TGEI IV Sbjct: 628 LEMPFEKAKEMGAVALFGEKYGHIVRVVKI-----GDYSIELCGGTHVDRTGEIGSFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE S+ AG+RRIEA+TG+ H+ D +K ++S LK S V+GR+ + EE +L+ Sbjct: 683 SEGSVAAGVRRIEALTGKSVLEHIRKNDNTIKKISSILKTSPDEVIGRLSGLLEEQNELE 742 Query: 772 LIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K QL V++L KI V ++ + ++S L+ + D L++K++SGII+ Sbjct: 743 NKLQSLKDQLATSRVDELVDEVQKINGVKVLTAELKGIESDNLRKLSDKLKEKMESGIIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L + K + VVT+DL++R F+A L A+V GGGGGGRP MAQ+GG +K Sbjct: 803 LAS-NLGNKVIFVSVVTDDLVERGFHAGKLIGKVARVT-GGGGGGRPDMAQAGGKKVDKI 860 Query: 886 DQAI 889 +A+ Sbjct: 861 TEAL 864 >gi|238761735|ref|ZP_04622710.1| Alanyl-tRNA synthetase [Yersinia kristensenii ATCC 33638] gi|238700249|gb|EEP92991.1| Alanyl-tRNA synthetase [Yersinia kristensenii ATCC 33638] Length = 847 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/887 (43%), Positives = 551/887 (62%), Gaps = 62/887 (6%) Query: 28 LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87 ++P NDPTL+FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHH Sbjct: 1 MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60 Query: 88 TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145 TFFEMLGNFSFG YFK AI AW+LLT + F+L + +L++TVY+ D+EA+++W G Sbjct: 61 TFFEMLGNFSFGDYFKHDAISFAWELLTSAQWFNLPKEKLWVTVYETDDEAYEIWANDIG 120 Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERY 197 + ++IIRI N DNFW M +TGPCGPC+EIFFD G+ I GG PGS+EE G+RY Sbjct: 121 IPRERIIRIGDNKGSAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAEEDGDRY 180 Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257 IEIWN+VFMQF +Q+ LPK S+DTGMGLER+A VLQ +NY+IDLF+ LI+A Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVA 240 Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317 +VTG + + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ + +LG Sbjct: 241 EVTGATDLSSKSL--RVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298 Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377 E L+ L T MGSA EL Q + ++E+ L++E+E+F +TL+RGL LLD LS L Sbjct: 299 KETFFYKLVAPLITVMGSAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT 358 Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437 D L+G+ AF+LYDT+G P+D+ D+ R L +D F QA+E QR RAR S G G Sbjct: 359 GD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFG 415 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 + + SL A+QF GYD ++ + V A+ + Sbjct: 416 AD-----YNSLIRVDSASQFSGYDHVQ-----------------------QQATVTALFR 447 Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557 GE V+E G++ VV +QTPFY E+GGQ+GD G + D QK + I H Sbjct: 448 NGEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKGELKNATATFAVADTQKYGQAIG-HL 506 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 + G LR S+ +D R ++ +NHSATHLLH AL LG HV+Q GS + L Sbjct: 507 GQLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHLLHAALRKTLGDHVAQKGSLVNDKYL 566 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677 RFD +H + + +++ +ED VN+ I +N+PV T +M + A GA AL G KY+D+VR Sbjct: 567 RFDFSHFEAMKPEQIRLVEDMVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVR 626 Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 V+++ G S+ LCGG H + TG+I L I+SES AGIRRIEA+TG+ A + L Sbjct: 627 VLTM-----GDFSTELCGGIHANRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQ 681 Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIAD 793 Q + L +A +K N+ +V + + R+LQ + ++ Q + S K+ Sbjct: 682 QSDLLSDVAHLVKGDTNNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKL-- 739 Query: 794 VNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850 +N + ++S++D+ E L++++D L+ ++ S II+L + + K S+++ VT+DL + Sbjct: 740 INGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLA-TTADDKVSLIVGVTKDLTGKV 798 Query: 851 NAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 A +L A ++ +V GG GGGRP MAQ+GG + A+A V +++ Sbjct: 799 KAGELIADIAQQV--GGKGGGRPDMAQAGGTDVQALPSALASVEAWV 843 >gi|254524059|ref|ZP_05136114.1| alanyl-tRNA synthetase [Stenotrophomonas sp. SKA14] gi|219721650|gb|EED40175.1| alanyl-tRNA synthetase [Stenotrophomonas sp. SKA14] Length = 882 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/898 (43%), Positives = 547/898 (60%), Gaps = 59/898 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH ++PS+ L+P NDPTL+FTNSGMV FK++F G EK Y Sbjct: 8 TTSQIRSDFLEFFKGKGHTIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSYVRAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ+C+RAGGKHNDLD VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ + L Sbjct: 68 DVQRCLRAGGKHNDLDQVGYTARHHTFFEMLGNWSFGDYFKKDAIAWAWELLTQVWKLPA 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+EA+ LW+ + G+ ++I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYQTDDEAYALWRDMVGVPEERIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ I GG PGS E+G+R+IEIWNLVFMQF++Q LP +DTGMGLER+A Sbjct: 188 FYDHGDHIAGGPPGSPDEDGDRFIEIWNLVFMQFDRQPDGTLVPLPAPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI+ + ++TG N + RVI DH+R+ SFLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQALIRKASELTGTADLENKSL--RVIADHIRACSFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P L+P L +MG AYPEL A + L++E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFSKLVPTLVEQMGEAYPELPAAMDTVTRALQAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + ++ G AF+LYDT+G PLD+ QDI R L +D Sbjct: 366 EERFAETLDAGMKIFEDVAGK-ASNGVIPGVDAFRLYDTYGFPLDLTQDIARERDLT-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 I F+ A+E+QR ARA G G T + L T F+GYD L+ Sbjct: 424 IAGFDAAMEQQRETARAAG-KFGGGVT--LPAELVATLSPTVFLGYDRLQ---------- 470 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +G+S V A+++ G V+ A +G V V+ +QTPFYAE+GGQ+GDTG Sbjct: 471 ----------ADGLS--VLALLKDGRPVQSADAGDSVIVITNQTPFYAESGGQVGDTGVL 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+G+RL + D QK A H + G L+ L +D + R +NHSATHLLH Sbjct: 519 TGNGVRLAVEDTQKFAGQFHGHVGTLSEGGLKIGDVLSGQVDGERRGATILNHSATHLLH 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD LRFD +H +PI++ EL IE VN + N M Sbjct: 579 AALREVLGTHVQQKGSLVAPDRLRFDFSHFQPISAEELAVIERKVNQQVRANNAAEVHTM 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A+ GA AL G KY + VRV+ + G +S+ LCGGTHV+ TG+I L I SE Sbjct: 639 AMQEALDFGAMALFGEKYGEHVRVLKM-----GDYSTELCGGTHVNRTGDIGLFKITSEG 693 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TGQ A H+ ++ +L A L S +VV ++ + + ++L+ Sbjct: 694 GVSAGVRRIEAVTGQGALDHVDAEEARLAEAAELLGGSAADVVEKIRALGQRQKQLE--- 750 Query: 775 AKRKLQ--------LNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 R+L+ DLS ++A V ++ + D+K L+ MD L++++ + Sbjct: 751 --RELEAVKAKVAAGATADLSGQAVEVAGVKVLAARLEGFDAKALRDAMDRLKQQLGDAV 808 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I+L G +++ KA+++ V + A +L A + GG GGGRP +AQ GG +G Sbjct: 809 IVLAG-AQDGKAALVAGVNGSATGKVKAGELLSHIAGQI-GGKGGGRPDLAQGGGEDG 864 >gi|52842026|ref|YP_095825.1| alanyl-tRNA synthetase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148359345|ref|YP_001250552.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby] gi|296107392|ref|YP_003619092.1| alanyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy] gi|59798497|sp|Q5ZUJ9|SYA_LEGPH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830130|sp|A5ICV6|SYA_LEGPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52629137|gb|AAU27878.1| alanyl tRNA synthetase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148281118|gb|ABQ55206.1| alanyl tRNA synthetase [Legionella pneumophila str. Corby] gi|295649293|gb|ADG25140.1| alanyl-tRNA synthetase [Legionella pneumophila 2300/99 Alcoy] gi|307610501|emb|CBX00082.1| alanyl-tRNA synthetase [Legionella pneumophila 130b] Length = 860 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/885 (42%), Positives = 545/885 (61%), Gaps = 58/885 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL +F + GH+++ SSSL+P NDPTL+FTN+GMV FK++F G E YQ T Sbjct: 4 SEIRQAFLNYFVQRGHQIVASSSLVPSNDPTLLFTNAGMVQFKDLFLGLETRSYQRAATA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ + R Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLHIPAER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TVY ED EA +W K +S ++ R DNFWSM +TGPCGPC+EIF+D G + Sbjct: 124 LWVTVYKEDLEAEDIWLKEMKVSPERFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGPEVA 183 Query: 185 GGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A V+Q +N Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFNRDREGHLHPLPKPSVDTGMGLERLAAVIQGVHSN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNH---RVIVDHLRSSSFLIADGILPANEGRGY 299 Y+ID F++LI+A Q+ G +I +NH +VI DH+RS SFLI DG+LP+NEGRGY Sbjct: 244 YEIDSFQYLIKAIAQL------GQDIDLNHTSLKVIADHIRSCSFLIVDGVLPSNEGRGY 297 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG P L+ L MG AYPELI +K IE L+ E+ +F Sbjct: 298 VLRRIIRRAVRHGNKLGLPSPFFSKLVQPLIDVMGDAYPELINSKAHIERILQQEENQFT 357 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LL + +L E L+G+VAFKLYDT+G P+D+ DI+ +GL ID+ +FN Sbjct: 358 RTLEQGLRLLQDHIKNLQGQE-LSGEVAFKLYDTYGFPIDLTADIIREQGLH-IDMEAFN 415 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 Q +++QR +++A S TT+ + ++ + ++F GY+ Sbjct: 416 QLMQQQREQSQAAS----QFTTD--YHAVSQLDHQSEFHGYE------------------ 451 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + + ++Q+G V+ G K V+ D TPFYAE+GGQ+GD G IG Sbjct: 452 -----KESMEAKIIGLLQEGNEVKSINKGAKGAVILDHTPFYAESGGQVGDKGLLIGKEF 506 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 Q+ D QK + + VH+ V +G L ++ + +D R + +NH+ATHLLH AL Sbjct: 507 TFQVDDTQKVGQAV-VHYGKVIKGELTLDLLIHAQVDNIRRDAIRLNHTATHLLHAALKK 565 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+G HV Q GS + + RFD +H + +T +++ IE+ VN I N V+T++M+ E A Sbjct: 566 IVGQHVQQRGSLVDAERARFDFSHFEALTPQQIQQIEEVVNAQIRANNEVITQVMDIESA 625 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 SGA AL G KY+D VRV+S+ G S LCGGTH TG+I L IV+E I +G Sbjct: 626 KQSGAVALFGEKYSDAVRVLSM-----GDFSKELCGGTHARRTGDIGLFKIVAEYGIASG 680 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK--- 776 IRRIE +TG+ A + + Q + +LA+ LK + ++ +V ++ + + + + AK Sbjct: 681 IRRIEMVTGRYALAWVNEQLGFMNNLAATLKTTPNSLQEKVSQLLLDNKNQEKMIAKLLS 740 Query: 777 RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K Q + D+ +I +N + + +DS+ ++ MD L+ +I S +I+L I ++ Sbjct: 741 EKAQKSGADILGEIEEIKGINLLIKQLEGMDSQTMRHTMDQLKSRIDSAVIILFTI-EQN 799 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 K +V+ V+++++ + A A+L + G GGGR MAQ GG Sbjct: 800 KMNVIAGVSKNIIGK--APSAAQLVRHLC--GKGGGRDDMAQGGG 840 >gi|83647875|ref|YP_436310.1| alanyl-tRNA synthetase [Hahella chejuensis KCTC 2396] gi|123531367|sp|Q2SBT9|SYA_HAHCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83635918|gb|ABC31885.1| alanyl-tRNA synthetase [Hahella chejuensis KCTC 2396] Length = 876 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/911 (43%), Positives = 548/911 (60%), Gaps = 60/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ FL++FQ+NGHE++ SSSL+P +DPTL+FTN+GM FK++F G++K Y TT Sbjct: 4 SEIRSAFLKYFQRNGHEVVASSSLVPADDPTLLFTNAGMNQFKDVFLGKDKRNYDRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT ++D+ Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINYAWEFLTSSDWLNIDK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L +TVY D+E+F +W G+ ++IIRI N DNFW M +TGPCGPC+EI Sbjct: 124 SKLTVTVYASDDESFDIWANEIGVPEERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS E+G+R+IEIWN+VFMQF + E LPK S+DTGMGLER++ Sbjct: 184 FYDHGPHIAGGPPGSPDEDGDRFIEIWNVVFMQFNRTADGEMHPLPKPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 ++Q +NY+IDLF+ L+ +AS+ + G E + RVI DH+RSSSFLIADG+LP Sbjct: 244 ALMQGVHSNYEIDLFQELLAEASKVLGGASIEEPAL---RVIADHIRSSSFLIADGVLPE 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N GRG VLRRI+RRA Y +G TEP + L+ L MG AYPEL ++ IE+TL Sbjct: 301 NIGRGSVLRRIIRRAARYGNKVGATEPFLHKLVGKLVELMGDAYPELKASQNKIEKTLLL 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTLD+GL LL+ L L K + G F LYDT+G P+++ DI R LA + Sbjct: 361 EEEQFAKTLDKGLKLLEHELEQL-KGMTIPGKTIFTLYDTYGFPVELTNDIARERSLA-M 418 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D+ + +E QR RAR A S G+ I S ++F GY L GS Sbjct: 419 DMDGYEVEMEAQRKRAREAGSFGVDYNAGLNIDVS-------SEFTGYTELAGS------ 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 K L A+ + + GQ+ VV D+TPFYAE+GGQ+GDTG Sbjct: 466 YKAL-----------------ALFAGSDKADALTVGQQGLVVLDKTPFYAESGGQVGDTG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D + D +K+ I VH V G ++ ++ +D R+ ++NHSATHL Sbjct: 509 VLKTDTGVFVVKDTKKEGAAI-VHIGAVSEGEIKVGQTVTAEVDRHKRKATALNHSATHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + P+ LRFD H +P+T +++ +E VN I N V T Sbjct: 568 LHAALRKVLGDHVAQKGSLVDPERLRFDFAHFEPMTQEQIRQVESIVNAQIRANTSVSTE 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A GA AL G KY D VRV+++ D S LCGGTHV TG+I + I S Sbjct: 628 VMGMDAARERGAMALFGEKYGDTVRVLAMGESD---FSIELCGGTHVERTGDIGMFVIAS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E+ AG+RRIEA+TGQ A + + D L+ +A +K ++ +V + E R+L Sbjct: 685 EAGTAAGVRRIEALTGQPAENWVQSSDALLRDIAVLVKGNRETAADKVRALIERSRQLEK 744 Query: 771 QLIHAKRKLQLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVMDA---LQKKIQSGIIM 826 ++ K KL + DL+ + DV + + +++D + K++MD L+ K+ +++ Sbjct: 745 EVDQVKAKLASSAGSDLAASAV-DVKGLKVLAAKLDGVDRKALMDTVDQLKNKLGQAVVL 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + ++ KAS++ VT+ + A DL ++ A+ L GG GGGRP MAQ GG K D Sbjct: 804 LASV-EDGKASIVAGVTKAESAKVKAGDLVKMVAEQL-GGKGGGRPDMAQGGGVELGKLD 861 Query: 887 QAIAGVASFLK 897 A+A V ++++ Sbjct: 862 AALASVNAWVE 872 >gi|70731848|ref|YP_261590.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf-5] gi|83305855|sp|Q4K843|SYA_PSEF5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|68346147|gb|AAY93753.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf-5] Length = 874 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/891 (43%), Positives = 533/891 (59%), Gaps = 57/891 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y + Sbjct: 4 AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT K +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ A+ + G + + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLDAAAKAIGCTNDAQ--ASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELKSQQAHIERVLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K ++ GDV FKLYDT+G P+D+ DI R L +D Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-KGSVVPGDVVFKLYDTYGFPMDLTGDIARERNLT-LD 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A S G+ + K+ AT+F GY G Sbjct: 420 EEGFEREMEAQRVRARSASSFGMDYNSLVKVDV-------ATEFTGYHATSG-------- 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+ V A+ ++G+ V+ G++ VV DQTPFYAE+GGQ+GD G Sbjct: 465 ---------------SAKVVALYKEGQSVDMLSEGEEGVVVLDQTPFYAESGGQIGDCGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K G F+HH ++ +G L + +D Q R S+NHSATHLL Sbjct: 510 LQAGNARFDVRDTTKTG-GAFLHHGVLAKGSLTVGAPVETQVDAQVRHATSLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I ++K++ED VN I +N PV T Sbjct: 569 HAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNTPVETEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A GA AL G KY D VRV+S+ GG S LCGG H + TG+I LL I SE Sbjct: 629 TDIDTAKKKGAMALFGEKYGDSVRVLSM----GGDFSVELCGGIHANRTGDIGLLKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + +G+RRIEA+TG A ++L +E+LK A+ +K S+ N++ ++ + E R L Q Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQLKEAATLVKGSRDNLIDKLSAVLERNRLLEKQ 744 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM---DALQKKIQSGIIMLV 828 L + K D + ADV + + + +D ++ K+++ D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAGDDLSAQAADVKGVKVLAARLDGQDGKALLALVDQLKNKLGRAVILL- 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E+K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 804 GSVHEEKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853 >gi|205830249|sp|A5UY81|SYA_ROSS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 905 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/927 (41%), Positives = 542/927 (58%), Gaps = 69/927 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 ++IR FL FF++ GH +PSSSLIP NDPTL+FTNSGMV FK+ F G E+ Y TTV Sbjct: 7 AAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPYTRATTV 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI +AW+LLTK F+L R Sbjct: 67 QKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKSEAIPMAWELLTKVFELPVER 126 Query: 125 LYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L+ TV++ D+EA +LW +G D+++R DNFW MA+TGPCGPCSEI Sbjct: 127 LWFTVFEGDDEVPPDDEAAQLWVA-AGADPDRVLRFGRKDNFWVMADTGPCGPCSEITIY 185 Query: 179 QGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ + G + + Y+EIWN VFMQFE+ Q L + S+DTGMGLERMA V+ Sbjct: 186 IGDDLRAMSAQGVNSDDPNYVEIWNNVFMQFERSTMQP---LHRPSVDTGMGLERMAMVM 242 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 Q + Y+ DLF LI+ + G Y + +R + DH R+ +FLIADG+LP N Sbjct: 243 QGVHSTYETDLFIPLIERQLALLGADESTYRAR-VAPYRAVADHSRAVAFLIADGVLPGN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GR YVLRRI+RRA+ R +G+ +P + ++ A+ +MG+ YPEL + I ET+ E Sbjct: 302 TGRSYVLRRILRRAVYQGRTVGFEKPFLAEIVAAVIEQMGAVYPELRERADFILETVDLE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + +F +TL G+ +L+ V+ + ++ GD AF L DT+G PLD+ Q I GL Sbjct: 362 ERQFLRTLSGGMSILNSVIERVRASGSTVIPGDDAFTLKDTYGFPLDLTQKIAAEHGLT- 420 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D + + +EEQR R R + ++W + T+F GY + GS Sbjct: 421 VDEAGYERRMEEQRDRGR-RAAQFKRAAEAEVWAGID--LPPTRFTGYAAVSGS------ 471 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +V+AIV G+ V EA +GQ+V++ D TPFYAE+GGQ+GDTG Sbjct: 472 -----------------GVVQAIVVAGDQVAEASAGQQVQIALDSTPFYAESGGQVGDTG 514 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 IG R+++ DVQ+ G+ VH+ +VE G + + +D R + NH+ATHL Sbjct: 515 VLIGPRGRVRVEDVQRPVPGVIVHYGVVESGSVMLHDPVDAHVDSGRRAAIMRNHTATHL 574 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG H +Q GS + PD LRFD TH++P+T +L IE VN I + PVV + Sbjct: 575 LHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPLTPEQLHEIERRVNAWIRADTPVVWQ 634 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSV---------------EYEDGGVH--SSALCG 695 ++ + AI +GA AL G KY D VR+V++ E E G S LCG Sbjct: 635 ELSYQAAIEAGAIALFGEKYGDVVRMVTIGCVNGHDAPSPAALAERELAGFPMCSRELCG 694 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV +GEI L I+SESS+ AG+RRIEA+TG A + + Q L+++A+ + Q Sbjct: 695 GTHVGRSGEIGLFRIISESSVAAGVRRIEALTGPEAEAWVDAQIATLQAVAARVGAPQTQ 754 Query: 756 VVGRVEEIWEEYRKLQLI---HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELK 810 +V RVE + E ++ Q R + N+E L S + D+ F++ + ++ L+ Sbjct: 755 LVERVEALIAELKQRQRALDELTARMARSNLEGLLASVQSVGDIRFLAAQVEAPNAARLR 814 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 + D L+ K+ SG+++L + + KA +L + T DL R +A +L + A ++ GG GG Sbjct: 815 EMGDWLRDKLGSGVVVLATVF-DGKAQILAMATPDLAGKRIHAGNLVKALAPIV-GGSGG 872 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 GRP MAQ+GG + K QA+ VA+ + Sbjct: 873 GRPDMAQAGGRDSAKIPQALEHVAAVI 899 >gi|148657329|ref|YP_001277534.1| alanyl-tRNA synthetase [Roseiflexus sp. RS-1] gi|148569439|gb|ABQ91584.1| alanyl-tRNA synthetase [Roseiflexus sp. RS-1] Length = 931 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/926 (41%), Positives = 542/926 (58%), Gaps = 67/926 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 ++IR FL FF++ GH +PSSSLIP NDPTL+FTNSGMV FK+ F G E+ Y TTV Sbjct: 33 AAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPYTRATTV 92 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI +AW+LLTK F+L R Sbjct: 93 QKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKSEAIPMAWELLTKVFELPVER 152 Query: 125 LYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L+ TV++ D+EA +LW +G D+++R DNFW MA+TGPCGPCSEI Sbjct: 153 LWFTVFEGDDEVPPDDEAAQLWVA-AGADPDRVLRFGRKDNFWVMADTGPCGPCSEITIY 211 Query: 179 QGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ + G + + Y+EIWN VFMQFE+ Q L + S+DTGMGLERMA V+ Sbjct: 212 IGDDLRAMSAQGVNSDDPNYVEIWNNVFMQFERSTMQP---LHRPSVDTGMGLERMAMVM 268 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q + Y+ DLF LI+ + G + +R + DH R+ +FLIADG+LP N Sbjct: 269 QGVHSTYETDLFIPLIERQLALLGADESTYRARVAPYRAVADHSRAVAFLIADGVLPGNT 328 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GR YVLRRI+RRA+ R +G+ +P + ++ A+ +MG+ YPEL + I ET+ E+ Sbjct: 329 GRSYVLRRILRRAVYQGRTVGFEKPFLAEIVAAVIEQMGAVYPELRERADFILETVDLEE 388 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 +F +TL G+ +L+ V+ + ++ GD AF L DT+G PLD+ Q I GL + Sbjct: 389 RQFLRTLSGGMSILNSVIERVRASGSTVIPGDDAFTLKDTYGFPLDLTQKIAAEHGLT-V 447 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D + + +EEQR R R + ++W + T+F GY + GS Sbjct: 448 DEAGYERRMEEQRDRGR-RAAQFKRAAEAEVWAGID--LPPTRFTGYAAVSGS------- 497 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +V+AIV G+ V EA +GQ+V++ D TPFYAE+GGQ+GDTG Sbjct: 498 ----------------GVVQAIVVAGDQVAEASAGQQVQIALDSTPFYAESGGQVGDTGV 541 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 IG R+++ DVQ+ G+ VH+ +VE G + + +D R + NH+ATHLL Sbjct: 542 LIGPRGRVRVEDVQRPVPGVIVHYGVVESGSVMLHDPVDAHVDSGRRAAIMRNHTATHLL 601 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG H +Q GS + PD LRFD TH++P+T +L IE VN I + PVV + Sbjct: 602 HRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPLTPEQLHEIERRVNAWIRADTPVVWQE 661 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSV---------------EYEDGG--VHSSALCGG 696 ++ + AI +GA AL G KY D VR+V++ E E G + S LCGG Sbjct: 662 LSYQAAIEAGAIALFGEKYGDVVRMVTIGCVNGHDAPSPAALAERELAGFPMCSRELCGG 721 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV +GEI L I+SESS+ AG+RRIEA+TG A + + Q L+++A+ + Q + Sbjct: 722 THVGRSGEIGLFRIISESSVAAGVRRIEALTGPEAEAWVDAQIATLQAVAARVGAPQTQL 781 Query: 757 VGRVEEIWEEYRKLQLI---HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKS 811 V RVE + E ++ Q R + N+E L S + D+ F++ + ++ L+ Sbjct: 782 VERVEALIAELKQRQRALDELTARMARSNLEGLLASVQSVGDIRFLAAQVEAPNAARLRE 841 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGG 870 + D L+ K+ SG+++L + + KA +L + T DL R +A +L + A ++ GG GGG Sbjct: 842 MGDWLRDKLGSGVVVLATVF-DGKAQILAMATPDLAGKRIHAGNLVKALAPIV-GGSGGG 899 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 RP MAQ+GG + K QA+ VA+ + Sbjct: 900 RPDMAQAGGRDSAKIPQALEHVAAVI 925 >gi|26991160|ref|NP_746585.1| alanyl-tRNA synthetase [Pseudomonas putida KT2440] gi|37999403|sp|Q88EI8|SYA_PSEPK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|24986204|gb|AAN70049.1|AE016644_3 alanyl-tRNA synthetase [Pseudomonas putida KT2440] Length = 874 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 4 AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L+ A+ + G +G + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K +++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + AT+F+GY Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 D T G I+ A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GDTG Sbjct: 460 ---------DATEGQGKII-ALYKDGQSVDQLGEGEEGVVVLDRTPFYAESGGQVGDTGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K G F+HH +V G L + +D + S+NHSATHLL Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVVTSGALVIGSPVEAKVDADVQHATSLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + + ++K +ED VN I +N PV T + Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVETEL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+SE Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L Q Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744 Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L + K +DLS ++ ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853 >gi|312962605|ref|ZP_07777095.1| alanyl-tRNA synthetase [Pseudomonas fluorescens WH6] gi|311283185|gb|EFQ61776.1| alanyl-tRNA synthetase [Pseudomonas fluorescens WH6] Length = 872 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/890 (44%), Positives = 533/890 (59%), Gaps = 57/890 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T+ Sbjct: 4 AEIREAFLRFFEEQGHTRVSSSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGK++DL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW LT L + + Sbjct: 64 QKCVRAGGKNSDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWTFLTGVLKLPKEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY D+EA+ +W + G+ +++IRI N DNFW+M +TGPCGPC+EIF+ Sbjct: 124 LWVTVYATDDEAYDIWTQQIGVPVERMIRIGDNKGAPYASDNFWTMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ V Sbjct: 184 DHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERISAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q +NY+IDLF +L+ AS G E + + +V+ DH+RS FLIADG+LP+NEG Sbjct: 244 MQHVHSNYEIDLFTNLLSASAAAIGCANESQSSL--KVVSDHIRSCGFLIADGVLPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA + LG T ++ AL EMG A+PEL Q + IE L++E+E Sbjct: 302 RGYVLRRIIRRACRHGNKLGATGSFFYKIVAALVAEMGDAFPELKQQQGNIERVLKAEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +F KTL+ GL +L+ L+ L K ++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 362 QFSKTLEHGLKILEQDLAEL-KGTVVPGDVVFKLYDTYGFPMDLTADIARERELT-IDEA 419 Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + +E QR RAR A S GL T K+ AT+F GY G Sbjct: 420 GFEREMEAQRVRARSASSFGLDYNTLVKVDV-------ATEFTGYKATVG---------- 462 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S+ + A+ + G+ V+ G + VV +QTPFYAE+GGQ+GD G Sbjct: 463 -------------SAKIVALYKDGKSVDVLNEGDEAVVVLNQTPFYAESGGQVGDCGFLS 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 R ++ D K G F+HH ++ G L + +D R ++NHSATHLLH Sbjct: 510 STSGRFEVRDTTKTG-GAFLHHGVLVLGNLTIGAPVDTQVDADVRHATALNHSATHLLHA 568 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + LRFD +H + I A++K++ED VN I +N V T + Sbjct: 569 ALRQVLGDHVQQKGSLVDSQRLRFDFSHFEAIPPAQIKALEDIVNAEIRKNTAVQTEETD 628 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A A GA AL G KY D VRV+S+ GG S LCGG H + TG+I LL I+SES Sbjct: 629 IETAKAKGAMALFGEKYGDSVRVLSM----GGDFSVELCGGIHANRTGDIALLKIISESG 684 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQ 771 + +G+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R +L+ Sbjct: 685 VASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALEKQLE 744 Query: 772 LIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + AK +DLS + DV ++ + D K L +++D L+ K+ +I+L G Sbjct: 745 QLQAKAASAAG-DDLSASAVDVKDVKVLAARLDGQDGKALLALVDQLKNKLGRAVILL-G 802 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 803 SVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 851 >gi|242280583|ref|YP_002992712.1| alanyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638] gi|242123477|gb|ACS81173.1| alanyl-tRNA synthetase [Desulfovibrio salexigens DSM 2638] Length = 880 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/902 (42%), Positives = 537/902 (59%), Gaps = 48/902 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FL++F+KNGH ++ SSSL+P +DPTL+FTN+GMV FKN F GQEK Y TT Sbjct: 3 ASEIREKFLKYFEKNGHTIVDSSSLVPKDDPTLLFTNAGMVQFKNTFLGQEKRDYVRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ W LT+E L + Sbjct: 63 SQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFCWGFLTEELGLPKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181 +LY+T+Y +D+EA +LW+K+ A++I R+ DNFWSM +TGPCGPCSE+ DQGE Sbjct: 123 KLYVTIYTDDDEADELWQKVVNFPAERIYRLGEKDNFWSMGDTGPCGPCSEVHIDQGEDM 182 Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 C P G + +RY+EIWNLVFMQ++Q + R LP+ SIDTGMGLER+ V Q Sbjct: 183 SCGPNCGIGKC-DCDRYLEIWNLVFMQYDQDEEGNRVPLPRPSIDTGMGLERITAVCQGV 241 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 +N++ D+F+ +IQA + G+KY+ ++ ++ +VI DH RS +FLI D ILP+NEGRG Sbjct: 242 QSNFETDIFQPMIQAVAKKAGVKYKEDSEIDTALQVIADHSRSIAFLITDQILPSNEGRG 301 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG T+P + + +M +PEL+ K + ++ E+ERF Sbjct: 302 YVLRRLIRRAFRFGRLLGLTDPFLHETTAMVVEQMSGQFPELLDNKDFMARMVKEEEERF 361 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TLD+GL++L+ + L K +++G+ AFKLYDT+G PLDI+ D+ + +D Sbjct: 362 SQTLDKGLIILEEEMEELKKAGKNLISGETAFKLYDTYGFPLDIINDVAEKQEFE-VDED 420 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN A++EQ+ RA+A G G + I+ + E F GY S+ E R Sbjct: 421 GFNAAMKEQKDRAKAAWKGSGEKNSGAIFRQVLEAGLKNSFTGY-----SELTTESR--- 472 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 IV + ++GE +E G ++ TPFY E+GGQ+GDTG Sbjct: 473 --------------IVNLLSEEGEHLERITQGNGGWIITAATPFYGESGGQMGDTGAVGT 518 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++ + K + + V G L E L + + R NH+ THLLH A Sbjct: 519 LTGNAEVLETVKASADLTASKVFVSEGELLLEQEAKLEVSPETRVATERNHTVTHLLHAA 578 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q+GS + PD LRFD TH +T E+ +E+ VN I + PVV + M+ Sbjct: 579 LKKVLGDHVKQSGSLVGPDRLRFDFTHIAAMTPEEIGEVENEVNRAILGDTPVVVQEMSN 638 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A A GA AL G KY D VRVV + E S LCGGTH+ +TGE I SES + Sbjct: 639 DEAAAKGATALFGEKYGDVVRVVEIPGE-----SMELCGGTHLKATGEAGTFVIQSESGV 693 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AGIRRIEA TG + L Q ++ + ++ LK + G + R+ + + + +L A Sbjct: 694 AAGIRRIEAATGWNSLKFLQEQRAEVVTSSAMLKAAPGQLADRIAALQSQVK--ELTKAN 751 Query: 777 RKLQLNV-----EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 KLQ + DL S +I V ++ + + K L+ DAL+ K+ SGI LV Sbjct: 752 DKLQSKLASGAGADLMSSIEEIGGVKVLAAKLEVTNVKALRDQADALRSKMDSGIFCLVA 811 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K S++I VT+DL DRF A L + ++A+V GGGGGRP MAQ+GG N ++A Sbjct: 812 QVDDNKVSLIIAVTKDLHDRFQAGALIKPVAAEVG--GGGGGRPDMAQAGGTNPAGIEKA 869 Query: 889 IA 890 A Sbjct: 870 FA 871 >gi|312171401|emb|CBX79660.1| Alanyl-tRNA synthetase [Erwinia amylovora ATCC BAA-2158] Length = 833 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/870 (44%), Positives = 528/870 (60%), Gaps = 58/870 (6%) Query: 43 MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102 M FK++F GQ+K Y + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF Sbjct: 1 MNQFKDVFLGQDKRNYTRAASSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYF 60 Query: 103 KERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157 K AI AW+LLT F L + +L++TVY+ D+EAF +W+K G+ ++IIRI N Sbjct: 61 KHEAIAFAWELLTSSQWFGLPKEKLWVTVYETDDEAFNIWEKEIGVPRERIIRIGDNKGS 120 Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQN 212 DNFW M +TGPCGPCSEIFFD G+ I GG PGS EE G+RYIEIWN+VFMQF ++ Sbjct: 121 AYASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRKA 180 Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272 LPK S+DTGMGLER+ VLQ +NY+IDLF LIQ+ QVTG N + Sbjct: 181 DGTMLPLPKPSVDTGMGLERITAVLQHVNSNYEIDLFAQLIQSVAQVTGATDLSNKSL-- 238 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG LL L Sbjct: 239 RVIADHIRSCAFLIADGVIPSNENRGYVLRRIIRRAVRHGNMLGAEGTFFYKLLAPLIAV 298 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 MG+A +L + +E+ LR+E+E+F KTL+RGL LLD L +L D +L+G+ F+LYD Sbjct: 299 MGAAGDDLKSQQSQVEQVLRTEEEQFAKTLERGLALLDEELENLQGD-MLDGETVFRLYD 357 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T G P+D+ D+ R L ID F +A+E+QR RAR S G GS I Sbjct: 358 TFGFPVDLTADVCRERNLK-IDEAGFERAMEQQRQRARDAS-GFGSDYNNVIRIDQ---- 411 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 A++F GY L+ +++ + AI G+ +GQ+ Sbjct: 412 -ASEFKGYQQLQ-----------------------LNAAISAIFVDGQAANTISAGQEGV 447 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 +V D TPFYAE+GGQ+GDTG G+ +++ QK A+ I H + G LR + Sbjct: 448 IVLDATPFYAESGGQVGDTGKLQGNSASFIVSNTQKYAQAIG-HSGKLAIGELRVGDCVA 506 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 +D R ++ +NHSATHLLH AL +LG HVSQ GS + LRFD +H + +T E Sbjct: 507 AQVDEARRARIRLNHSATHLLHAALRQVLGQHVSQKGSLVNDTYLRFDFSHFEAMTPQET 566 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 + +E+ VN I +NLP+ T IM E A A GA AL G KY+D VRV+S+ G S+ Sbjct: 567 RQVEEIVNAQIRRNLPIETNIMELEAAKAHGAMALFGEKYDDHVRVLSM-----GDFSTE 621 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTH S TG+I L I SES AG+RRIEA+TG+ A + L Q+E+L +A +K + Sbjct: 622 LCGGTHASRTGDIGLFRITSESGTAAGVRRIEAVTGEGALALLYSQNEQLVDIAQLVKAN 681 Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVED---LSCHKIA--DVNFMSHIISEVDSK 807 N+ +V + + R L+ + K Q ++ LS IA + +S+V+ K Sbjct: 682 HSNLNEKVRALIDHARALEKQLQQLKDQQAAQESASLSSKAIAVKGTKLLVSELSDVEPK 741 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGG 866 L++++D L+ ++ S II+L ++ + K S++ VT+DL DR A +L L+ KV GG Sbjct: 742 MLRTMVDDLKNQLGSAIIVLATVA-DGKVSLITGVTKDLTDRIKAGELVGELAQKV--GG 798 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGGRP MAQ+GG + A+AGV S++ Sbjct: 799 KGGGRPDMAQAGGTDAMALPAALAGVESWV 828 >gi|313497736|gb|ADR59102.1| AlaS [Pseudomonas putida BIRD-1] Length = 874 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 4 AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L+ A+ + G +G + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K +++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + AT+F+GY Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 D T G I+ A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GD+G Sbjct: 460 ---------DATEGQGKII-ALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K G F+HH +V G L + +D + S+NHSATHLL Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + + ++K +ED VN I +N PV T + Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVETEL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+SE Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L Q Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744 Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L + K +DLS ++ ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853 >gi|197124228|ref|YP_002136179.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. K] gi|196174077|gb|ACG75050.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. K] Length = 905 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/933 (40%), Positives = 545/933 (58%), Gaps = 72/933 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR F +F+++GH + S+SL+P NDPTL+FTN+GMV FK++FTG+E+ Y T Sbjct: 5 TAAEIRELFQRYFEEHGHRRVASASLVPQNDPTLLFTNAGMVQFKDVFTGRERRDYSRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+L+T + Sbjct: 65 TAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKRDAIAWAWELVTGPAWLGI 124 Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 + RL TV+ DEEAF+LWK G+ ++I ++ DNFW+M +TGPCGPCSE Sbjct: 125 AKDRLAATVFAGEGTLPWDEEAFELWK-AQGVPVERIHKLGAKDNFWAMGDTGPCGPCSE 183 Query: 175 IFFDQGECIPGG--LPGSSEEG-----ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 + + QG IP L G +G +R++EIWNLVFMQFE+ LPK SIDTG Sbjct: 184 LHYFQGNDIPCAEELAGRRCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPSIDTG 243 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285 GLER+A+V+Q K +NYD DLF+ +IQA E+++G +Y+ ++ V+ RVI DH R+++FL Sbjct: 244 AGLERLASVVQGKRSNYDTDLFRSIIQAVERLSGKRYDAASDDGVSMRVIADHARATTFL 303 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 + DG+LP+NEGRGYVLRRIMRRA+ + R LG +P + + A+ EMG AYPE + + Sbjct: 304 VGDGVLPSNEGRGYVLRRIMRRAIRHGRRLGLEKPFLAAVCGAVIDEMGGAYPETRENRA 363 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD----------------EILNGDVAFK 389 IE+ + E+E F +TLD+GL +L+G + L D I++G VAF+ Sbjct: 364 FIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDAIHDGKPATPAPGRARPIIDGKVAFQ 423 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 LYDT G PLD+ + I RG +D F++ + EQR AR+ G G + + + Sbjct: 424 LYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQR--ARSEWKGSGEQGVDDLHKQIA 480 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 + G +F+GY ++P + VKAI+ G V A G Sbjct: 481 GELGEVKFLGY-----------------EQP------AARAQVKAILANGARVARAGKGD 517 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 KVE+V D TPFY E+GGQ+GD G G G+ +++ D Q+ G+ H V RG + Sbjct: 518 KVELVTDATPFYGESGGQVGDVGRITGPGLEIRVDDAQRPVPGLVTHVGEVLRGEVAVGD 577 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ L +D + R + NHSATHLL AL +LG HV Q GS + PD LRFD +H +P+T Sbjct: 578 AVELAVDDRRRDLVRANHSATHLLQFALREVLGEHVKQAGSVVAPDYLRFDFSHFQPVTE 637 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL ++E VND++ +N T ++ E+A +GA + G KY D VRVV + Sbjct: 638 EELAAVERRVNDLVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIG------P 691 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 S LCGGTHV +G+I I SE SI +G+RR+ A TG RA + E+L+ A+ L Sbjct: 692 SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRAAALL 751 Query: 750 KVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--D 805 K V ++++ + L+ L A+ K DV + + V D Sbjct: 752 KAGALEVAQKIDQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAARVDGD 811 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 K L+ + D L+ ++ G++ L G ++ KA +L+ VT DL R A DL + +AK++ G Sbjct: 812 GKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAAKLV-G 869 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 G GGG+P MAQ+GG + ++A+ VA + Sbjct: 870 GSGGGKPDMAQAGGSDPAGLEKALEKVAELATR 902 >gi|146328813|ref|YP_001209206.1| alanyl-tRNA synthetase [Dichelobacter nodosus VCS1703A] gi|205830079|sp|A5EW88|SYA_DICNV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146232283|gb|ABQ13261.1| alanyl-tRNA synthetase [Dichelobacter nodosus VCS1703A] Length = 873 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/896 (41%), Positives = 535/896 (59%), Gaps = 62/896 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL +F +NGH+++ S+SL+P NDPTL+FTN+GMVPFK +F G E Y+ T Sbjct: 5 TTAEIRRAFLNYFSENGHKIVHSASLVPGNDPTLLFTNAGMVPFKELFIGTETRDYRRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT+ L Sbjct: 65 SAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWRFLTEVLQLPA 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 +L +TVY ED+EA+++W++ GL AD+IIRI +DNFW+M +TGPCGPC+E Sbjct: 125 EKLLVTVYHEDDEAYRIWQEKIGLPADRIIRIGDKAGKAKYESDNFWAMGDTGPCGPCTE 184 Query: 175 IFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS+ E+G+R+IEIWN+VFMQFE+ + LPK SIDTGMGLER+ Sbjct: 185 IFYDHGAEIFGGRPGSADEDGDRFIEIWNIVFMQFERDAEGTMKPLPKPSIDTGMGLERI 244 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NYDIDLF HLI A+ + G K EG + +VI DH+R++ FL+ DG+LP+ Sbjct: 245 AAVMQGVHSNYDIDLFIHLIDAAAKAVGCKNEGQ--ASLKVIADHIRATVFLMVDGVLPS 302 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRIMRRA+ + LG L+ AL EMG AYPE+I + I ET+R Sbjct: 303 NEGRGYVLRRIMRRAIRHGYKLGQQGLFFHKLVAALVAEMGEAYPEIIAEQARITETIRK 362 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL G+ +L+ L+ L K I++G+ FKLYDT+G P+D+ DI RGL + Sbjct: 363 EELRFAQTLTAGMQILEQDLATL-KGTIISGETVFKLYDTYGFPVDLTNDIARERGLT-L 420 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLLRGSKFMK 470 D + ++ QR RA+A SGT F + Y G T F+ Y Sbjct: 421 DEAGYEALMQAQRERAKA------SGT-----FRADKTYTVSGKTAFLAYQ--------- 460 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 S ++AI Q + + G + +V +Q+PFY E+GGQ+GD Sbjct: 461 --------------QEQTESTIEAIFVQEQAADTLDCGDEAVLVLNQSPFYGESGGQIGD 506 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G ++D QK+ + + +H ++RG+L ++ ID R + +HSAT Sbjct: 507 SGVIYHQNGAFLVSDTQKQGD-VLLHFGRLQRGVLSVGDTVCAEIDRARRAAIRRHHSAT 565 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL LG+HV Q GS + D LRFD +H +T+AE+ ++E +N+ I +N PV Sbjct: 566 HLLHQALRMTLGTHVQQKGSLVDADKLRFDFSHDAALTAAEIGAVEQLINEQILRNQPVN 625 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M + A A GA AL G KY D VRVV + +D S LCGGTHV TG++ L+ I Sbjct: 626 ISEMPYDQACAQGAMALFGEKYGDIVRVVKMGADD---FSVELCGGTHVKQTGDLGLVKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +++S++ AGIRR+E + G A + Q+ +L+ +A+ LK + V ++E + ++ + L Sbjct: 683 IAQSAVAAGIRRVECVAGLAALRYCQQQETQLQRIAAVLKSDLEHSVEKIERLQQDTKTL 742 Query: 771 Q--LIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + KR + L + + D++ M+ ++D+ L+ D L+ K Q ++ Sbjct: 743 EKTVQQLKRTVALGGTQETAESVVDIHGWKTMAVRRDDLDNAILRDTADQLRDKYQLDVV 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++G S + A +++ V + + L+A + G GGGRP AQ+GG N Sbjct: 803 -VIGSSDGEMARLVVSVAKSAAALKAGAIVQTLAAFI--DGKGGGRPDFAQAGGKN 855 >gi|270264045|ref|ZP_06192313.1| alanyl-tRNA synthetase [Serratia odorifera 4Rx13] gi|270042238|gb|EFA15334.1| alanyl-tRNA synthetase [Serratia odorifera 4Rx13] Length = 839 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/876 (43%), Positives = 546/876 (62%), Gaps = 56/876 (6%) Query: 36 LMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGN 95 ++FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGN Sbjct: 1 MLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGN 60 Query: 96 FSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIR 153 FSFG YFK AI AW+LLT E F+L + RL++TVY+ D+EAF +W+K G+ A++IIR Sbjct: 61 FSFGDYFKHDAISYAWELLTGENWFNLPKERLWVTVYETDDEAFDIWQKQIGVPAERIIR 120 Query: 154 ITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVF 205 I N DNFW M +TGPCGPC+EIF+D G+ I GG PGS+EE G+RYIEIWN+VF Sbjct: 121 IGDNKGAAFASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSAEEDGDRYIEIWNIVF 180 Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265 MQF +Q+ LPK S+DTGMGLER+A VLQ +NY+IDLF LI A +VTG Sbjct: 181 MQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFSKLITAVAKVTGAVDL 240 Query: 266 GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHL 325 N + RVI DH+RS +FL++DG++P++EGRGYVLRRI+RRA+ + +LG E L Sbjct: 241 DNKSL--RVIADHIRSCAFLVSDGVMPSSEGRGYVLRRIIRRAIRHGNMLGAKESFFYKL 298 Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385 + L MG A EL + + L+E+ L++E+++F +TL+RGL LLD L++L D L+G+ Sbjct: 299 VAPLIEVMGPAADELKRQQSLVEKVLKTEEDQFARTLERGLALLDEELANLQGD-TLDGE 357 Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445 AF+LYDT+G P+D+ D+ RGL +D F QA+E QR RAR S G G+ + Sbjct: 358 AAFRLYDTYGFPVDLTADVCRERGLK-VDEAGFEQAMEAQRRRARESS-GFGAD-----Y 410 Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505 S+ GA+QF GYD E+++ + V A+ + G+ V+E Sbjct: 411 NSMIRVDGASQFSGYD--------HEEQQ---------------ATVTALFRDGQPVDEI 447 Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565 G++ VV D+TPFY E+GGQ+GD G G ++D QK + I H + G+L Sbjct: 448 HVGEEAVVVLDETPFYGESGGQVGDKGVLKTAGADFVVSDTQKYGQAIG-HQGKLSHGVL 506 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 + + + ID R ++ +NHSATHLLH AL LG HV+Q GS + LRFD +H + Sbjct: 507 KVKDRVDAQIDIARRNRIRLNHSATHLLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFE 566 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685 + +++ +ED VN + +NLPV T +M +DA GA AL G KY+D VRV+++ Sbjct: 567 AMKPEQIRVVEDLVNQQVRRNLPVQTEVMALDDAKEKGAMALFGEKYDDSVRVLTM---- 622 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 G S+ LCGGTH S TG+I L I++ES AGIRRIEA+TG+ A + L Q++ L+ + Sbjct: 623 -GDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIATLHQQNDLLQDV 681 Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHI 800 A +K N+ +V + + R L+ + K Q ++ + K+ V + Sbjct: 682 AQLVKGDNSNLTDKVRAVLDRTRALEKELQQLKDQQAAQESASLSSQAKKVNGVQLLVSQ 741 Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860 + V++K L++++D L+ ++ S II+L + + K S++ VT+DL DR A +L A Sbjct: 742 LDNVEAKMLRTMVDDLKNQLGSAIIVLA-TTADDKVSLIAGVTKDLTDRVKAGELIGHVA 800 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + + GG GGGRP MAQ+GG + + A+ V +++ Sbjct: 801 QQV-GGKGGGRPDMAQAGGTDVSALPAALNSVEAWV 835 >gi|148546681|ref|YP_001266783.1| alanyl-tRNA synthetase [Pseudomonas putida F1] gi|148510739|gb|ABQ77599.1| alanyl-tRNA synthetase [Pseudomonas putida F1] Length = 897 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 27 AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 86 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 87 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 146 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 147 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 206 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 207 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 266 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L+ A+ + G +G + +V+ DH+RS FLIADG+LP+N Sbjct: 267 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 324 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 325 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 384 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K +++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 385 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 442 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + AT+F+GY Sbjct: 443 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 482 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 D T G I+ A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GD+G Sbjct: 483 ---------DTTEGQGKII-ALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDSGF 532 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K G F+HH +V G L + +D + S+NHSATHLL Sbjct: 533 LQAGAARFDVRDTTKTG-GAFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATHLL 591 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + + ++K +ED VN I +N PV T + Sbjct: 592 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVETEL 651 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+SE Sbjct: 652 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 707 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L Q Sbjct: 708 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 767 Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L + K +DLS ++ ++ + D K L +++D L+ K+ +I+L Sbjct: 768 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 826 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 827 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 876 >gi|225848695|ref|YP_002728858.1| alanyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644297|gb|ACN99347.1| alanyl-tRNA synthetase [Sulfurihydrogenibium azorense Az-Fu1] Length = 875 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/899 (41%), Positives = 547/899 (60%), Gaps = 41/899 (4%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +FL++F+ GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+ Y+ + QK Sbjct: 9 IRESFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRAASCQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 R GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ WD LT + Q +L Sbjct: 69 VFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFTWDYLTNYLKIPQEKLL 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++V++ED+EAF++W K+ GL +KI R+ DNFWSM +TGPCGP SEI++D+GE G Sbjct: 129 VSVFEEDDEAFEIWNKVIGLPEEKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGEKF-GN 187 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 S+E RY+EIWNLVFMQ+ + LP SIDTGMGLER+A+V+Q+ +NYD Sbjct: 188 PEFGSDEDFRYLEIWNLVFMQYNRDESGNLTPLPNPSIDTGMGLERIASVIQQVDSNYDT 247 Query: 247 DLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 DLFK +I+ +E++ G Y N + V RVI DHLR+ +FLI+DG+LP+NEGRGYVLRRI Sbjct: 248 DLFKPIIRFAEEIAGKTYGKNEKDDVAMRVIADHLRAITFLISDGVLPSNEGRGYVLRRI 307 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ Y R LG P + + + +M +AYPEL+ + I++ +SE+E+F KTL R Sbjct: 308 LRRALRYGRNLGIDRPFLYEGVDVVIDKMKNAYPELVPNRNYIKKITKSEEEKFIKTLRR 367 Query: 365 GLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 + +L ++ K+ + L G+ FKLYDT+G P+D++QDIL + +I F + + Sbjct: 368 SMDILYQMIETAKKEGRKFLTGEEVFKLYDTYGFPIDLLQDILRDESMT-FNIKEFEELI 426 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EQ+ R+R + + + I+ LK + +FIGY+ L + E KVL Sbjct: 427 LEQKERSR-KAFKTTAKQVKPIYLQLKSRLPENEFIGYNTL-----ISESSKVL------ 474 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 AIV++ + V +A G++VE++ D TPFY E GGQ+GD G G+ + Sbjct: 475 -----------AIVKEDQTVSQAKEGEEVEIILDITPFYPEKGGQVGDRGVIEGENFLAE 523 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D Q EG+ +H + G ++ + +D + R + +H+ATHLLH AL ILG Sbjct: 524 VIDTQTPTEGLILHKVKILFGTVKEGEFVRAKVDKERRENIMRHHTATHLLHSALRNILG 583 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS ++ + LRFD TH + ++ E+K IE+ VN I +N VV + M+ E+A+ S Sbjct: 584 DHVKQAGSLVSDEYLRFDFTHFESLSDEEIKMIEEFVNREIMKNEEVVCQEMSYEEALNS 643 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A+ KY D VRV+S GV S LCGGTHV TG+I I+SE ++ +G RR Sbjct: 644 GAIAIFEEKYGDVVRVIS-----AGV-SKELCGGTHVKRTGDIGYFKILSEYAVSSGTRR 697 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLIHAKRK 778 IEA+ G RA + + LK L+ L V + ++ RV ++ E+ R+L+ + K Sbjct: 698 IEAVAGIRAVEQGLKEHFLLKDLSRLLTVKEDELIDRVVKLQNQLKEKERELENLKKKAA 757 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK-KAS 837 L + L+ + D I V EL+ + D +++K+ +++LV KEK K + Sbjct: 758 LDKLNQTLNIIEKEDYKVAYGEIENVSPNELREIADNIKQKLGKAVVLLVSKDKEKSKVN 817 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++ +V++DL DR+ A ++ + A ++ G GGG+P AQ GG N K Q + +F+ Sbjct: 818 IVALVSKDLTDRYKASEILKKLAPIV-EGSGGGKPDFAQGGGTNLEKVPQLLQEFKNFI 875 >gi|205830257|sp|A5W0D9|SYA_PSEP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/891 (43%), Positives = 535/891 (60%), Gaps = 57/891 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 4 AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L+ A+ + G +G + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K +++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + AT+F+GY Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 D T G I+ A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GD+G Sbjct: 460 ---------DTTEGQGKII-ALYKDGQSVDQLGEGEQGVVVLDRTPFYAESGGQVGDSGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K G F+HH +V G L + +D + S+NHSATHLL Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVVASGALLIGSPVEAKVDADVQHATSLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + + ++K +ED VN I +N PV T + Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKQLEDIVNREIRKNTPVETEL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+SE Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L Q Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744 Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L + K +DLS ++ ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853 >gi|88813103|ref|ZP_01128344.1| alanyl-tRNA synthetase [Nitrococcus mobilis Nb-231] gi|88789587|gb|EAR20713.1| alanyl-tRNA synthetase [Nitrococcus mobilis Nb-231] Length = 869 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/902 (42%), Positives = 547/902 (60%), Gaps = 51/902 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL++F+ N HE++PSSSL+P NDPTL+FTN+GMV FK F G E+ Y + Sbjct: 8 AEIRQAFLDYFRANDHEIVPSSSLVPTNDPTLLFTNAGMVQFKETFLGHERRPYSRAASA 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ L +R Sbjct: 68 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQYAWEFLTEVLQLPPQR 127 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV++ED+EA +W + G++ ++ RI +DNFW+M +TGPCGPCSEIF+D G + Sbjct: 128 LWVTVFEEDDEAANIWLEEIGVAPERFARIGAHDNFWAMGDTGPCGPCSEIFYDHGPEVA 187 Query: 185 GGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS++ +G+R++EIWNLVFMQ+++ LP+ +DTGMGLER+A V+Q NN Sbjct: 188 GGPPGSAQADGDRFVEIWNLVFMQYDRDEHGRLSALPRPCVDTGMGLERIAAVVQGMHNN 247 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 ++IDLF HL+ ++ +V G NN + RVI DH+R+ +FLI DG+ P NEGRGYVLRR Sbjct: 248 FEIDLFHHLVHSAARVAGSADLSNNSL--RVIADHIRACAFLIVDGVFPGNEGRGYVLRR 305 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG E L+ L +MG+AYP L Q + E L+ E+ERF +TL+ Sbjct: 306 IIRRAIRHGYKLGIEEAFFYRLVSPLVEKMGAAYPALEQGRAQAERILKQEEERFRETLE 365 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +GL LL+G L L + + + G FKLYDT+G P+D+ DI RGL G+D+ F QA+ Sbjct: 366 QGLKLLEGDLRRL-ESQTIPGATIFKLYDTYGFPVDLTGDIARERGL-GLDMPGFEQAMA 423 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 QR RARA S K+ + + G T+F GYD L+ Sbjct: 424 AQRERARAAS-------AFKVDYKETGDFEGHTEFTGYDHLQD----------------- 459 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 +V A+ +G +G++ V+ D+TPFYAE+GGQ+GD G + + + Sbjct: 460 ------QGLVTALYAEGRRRNHLEAGEQGMVLLDRTPFYAESGGQVGDRGWLLASELEFE 513 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D K G F H +V +G L + +D + R+ +NHSATHLLH AL +LG Sbjct: 514 VWDT-VKYRGAFGHVGVVRQGRLAAGERVSTRVDAERRQATVLNHSATHLLHAALRRVLG 572 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 H Q GS + PD LRFD TH +P++ +L+ +E VND I N R M+ ++A+ Sbjct: 573 EHAQQKGSLVAPDRLRFDFTHFEPVSREQLERVERLVNDRIRANDVADVRYMSYDEAMDF 632 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY D VRV+ G S+ LCGGTHV TG+I +VSE+ I AGIRR Sbjct: 633 GAVALFGEKYADTVRVMRF-----GEFSTELCGGTHVRRTGDIGFFKLVSETGISAGIRR 687 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL- 781 IEAITGQ A + +L + L+ S N+ R+E++ + R+L+ A+++ +L Sbjct: 688 IEAITGQCAVAWAETVSRQLAHVGELLRCSSDNIELRLEQLIDRSRQLEKELARQQQKLA 747 Query: 782 -----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 N+ D + I V ++ + D++ L+ +D L+ K+ S +++L + E K Sbjct: 748 SQAGTNLADRAV-LIDGVKVLATTVEGGDNRALRDTLDQLKHKLGSAVVVLASVDGE-KV 805 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++ VT+D DR A +L A + GG GGGR AQ+GG + + DQA+ VA+++ Sbjct: 806 RLVGGVTKDFTDRLKAGELINAVASQI-GGRGGGRADFAQAGGSDPTQLDQALESVAAWV 864 Query: 897 KK 898 ++ Sbjct: 865 RE 866 >gi|119505423|ref|ZP_01627496.1| Phosphoserine aminotransferase, Methanosarcina type [marine gamma proteobacterium HTCC2080] gi|119458701|gb|EAW39803.1| Phosphoserine aminotransferase, Methanosarcina type [marine gamma proteobacterium HTCC2080] Length = 866 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/900 (42%), Positives = 541/900 (60%), Gaps = 48/900 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL +F++ GH + SSSL+P +DPTL+FTN+GM FK F G E YQ T Sbjct: 3 TAEIREAFLSYFEEQGHTRVESSSLVPHDDPTLLFTNAGMNQFKETFLGLETRAYQRACT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT+ +L + Sbjct: 63 SQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAINFAWTFLTEVLELPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++TV+ D+EA +W G+ + R+ DNFW M +TGPCGP SEIF+D G + Sbjct: 123 RLWVTVHISDDEAAAIWIDEIGIDPSCLSRL-DEDNFWQMGDTGPCGPSSEIFYDHGAHV 181 Query: 184 PGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 PGG PGS+++ +RYIEIWNLVFMQF + E LP S+DTGMGLER+A VLQ + Sbjct: 182 PGGPPGSADDDLDRYIEIWNLVFMQFNRDGAGELHPLPAPSVDTGMGLERIAAVLQHVHS 241 Query: 243 NYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NY+IDLF+ LI+A+ + E ++ RVI DHLRS +FLI DG++P+NEGRGYVL Sbjct: 242 NYEIDLFQTLIKATASALAVADLEEKSL---RVISDHLRSCAFLITDGVVPSNEGRGYVL 298 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + LG T+P L+P L EMG+AYP+L ++ I + LR+E+++F +T Sbjct: 299 RRIIRRAVRHGNKLGATKPFFAALVPVLVAEMGAAYPDLQASESAIVKALRAEEDQFART 358 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 LD G+ +L+ LS L + +L G++ F+LYDT+G P+D+ DI R L +D+ +++A Sbjct: 359 LDNGMAILEEALSGL-QGAVLPGELVFRLYDTYGFPVDLTNDIARERNLT-LDVEGYDEA 416 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + +QR R++ SG+ + + G TQF GYD G Sbjct: 417 MAQQRKRSQE------SGSFKVDYNESVTIPGETQFTGYDSTEG---------------- 454 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 S + A++ +GE+ + +G++ VV + TPFY E+GGQ+GD G G+ R Sbjct: 455 -------SGTILALLAEGEMAQSLAAGERGVVVLNSTPFYGESGGQVGDCGLLQGESSRA 507 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +TD KA+G HH V G L L T+D + R+++ +NHSATHLLH AL +L Sbjct: 508 DVTDT-TKAQGHHFHHVHVTSGSLNVGDVLAATVDNELRQRIRLNHSATHLLHEALRRVL 566 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV Q GS + + LRFD +H + +++A++ + VN+ I N T++M+ + A+A Sbjct: 567 GDHVVQKGSLVDSERLRFDFSHGEAVSAAQIDELTQIVNEQIRGNSATTTQLMDMDSAVA 626 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 +GA AL G KY D VRV+S+ E V LCGGTHV TG+I LL + ES + AG+R Sbjct: 627 AGATALFGEKYGDEVRVLSMGSEGFSVE---LCGGTHVDRTGDIGLLLVTGESGVAAGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEAITGQ A + +++ +A LK + VV + + E R+L+ A+ K +L Sbjct: 684 RIEAITGQAALVQSLASSQRVVDVAEVLKATPAAVVEKAGVLRSEVRELEKEVARLKQKL 743 Query: 782 NVE---DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 DL S ++ + ++ I D L+ +D + K+ + +++L + + K Sbjct: 744 ATSSGGDLTQSAVEVGGIKVLATQIEGADVATLRDTLDQCKNKLGTAVVLLAAVEGD-KI 802 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 S++ VT+D+ DR A D + A L GG GGGRP MAQ GG + A+A V ++ Sbjct: 803 SLVAGVTKDVTDRVRAGDAIKEFAGRL-GGKGGGRPDMAQGGGTDVAGLPAALAAVPDWV 861 >gi|220919010|ref|YP_002494314.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956864|gb|ACL67248.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-1] Length = 905 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/933 (40%), Positives = 545/933 (58%), Gaps = 72/933 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR F +F+++GH + S+SL+P NDPTL+FTN+GMV FK++FTG+E+ Y T Sbjct: 5 TAAEIRELFQRYFEEHGHRRVASASLVPQNDPTLLFTNAGMVQFKDVFTGRERRDYSRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+L+T + Sbjct: 65 TAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKRDAIAWAWELVTGPAWLGI 124 Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 + RL TV+ DEEAF+LWK G+ ++I ++ DNFW+M +TGPCGPCSE Sbjct: 125 AKDRLAATVFAGEGTLPWDEEAFELWK-AQGVPVERIHKLGAKDNFWAMGDTGPCGPCSE 183 Query: 175 IFFDQGECIPGG--LPGSSEEG-----ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 + + QG IP L G +G +R++EIWNLVFMQFE+ LPK SIDTG Sbjct: 184 LHYFQGNDIPCAEELAGRKCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPSIDTG 243 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285 GLER+A+V+Q K +NYD DLF+ +IQA E+++G +Y+ ++ V+ RVI DH R+++FL Sbjct: 244 AGLERLASVVQGKRSNYDTDLFRSIIQAVERLSGKRYDAASDDGVSMRVIADHARATTFL 303 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 + DG+LP+NEGRGYVLRRIMRRA+ + + LG +P + + A+ EMG AYPE + + Sbjct: 304 VGDGVLPSNEGRGYVLRRIMRRAIRHGKRLGLEKPFLAAVCGAVIDEMGGAYPETRENRA 363 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD----------------EILNGDVAFK 389 IE+ + E+E F +TLD+GL +L+G + L D I++G VAF+ Sbjct: 364 FIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDAIHDGKPATPAPGRARPIIDGKVAFQ 423 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 LYDT G PLD+ + I RG +D F++ + EQR AR+ G G + + + Sbjct: 424 LYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQR--ARSEWKGSGEQGVDDLHKQIA 480 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 + G +F+GY ++P + VKAI+ G V A G Sbjct: 481 RELGEVKFLGY-----------------EQP------AARAQVKAILANGARVARAGKGD 517 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 KVE+V D TPFY E+GGQ+GD G G G+ +++ D Q+ G+ H V RG + Sbjct: 518 KVELVTDATPFYGESGGQVGDVGRITGPGLEIRVDDAQRPVPGLVTHVGEVLRGEVAVGD 577 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ L +D + R + NHSATHLL AL +LG HV Q GS + PD LRFD +H +P+T Sbjct: 578 AVELAVDDRRRDLVRANHSATHLLQFALREVLGEHVKQAGSVVAPDYLRFDFSHFQPVTE 637 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL ++E VND++ +N T ++ E+A +GA + G KY D VRVV + Sbjct: 638 EELAAVERRVNDLVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIG------P 691 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 S LCGGTHV +G+I I SE SI +G+RR+ A TG RA + E+L+ A+ L Sbjct: 692 SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRAAALL 751 Query: 750 KVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--D 805 K V ++++ + L+ L A+ K DV + + V D Sbjct: 752 KAGALEVAQKIDQTQRRVKDLERALEEARSKAAAAQSGDLAALAKDVGGAKVLAARVDGD 811 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 K L+ + D L+ ++ G++ L G ++ KA +L+ VT DL R A DL + +AK++ G Sbjct: 812 GKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAAKLV-G 869 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 G GGG+P MAQ+GG + ++A+ VA + Sbjct: 870 GSGGGKPDMAQAGGSDPAGLEKALEKVAELATR 902 >gi|104782873|ref|YP_609371.1| alanyl-tRNA synthetase [Pseudomonas entomophila L48] gi|122402439|sp|Q1I6Z8|SYA_PSEE4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|95111860|emb|CAK16584.1| alanyl-tRNA synthetase [Pseudomonas entomophila L48] Length = 874 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/910 (42%), Positives = 544/910 (59%), Gaps = 57/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y + Sbjct: 4 AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWNFLTSDKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W + G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYASDDEAYDIWTQEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 V+Q +NY+IDLF+ L+ A+ + G + + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVMQHVHSNYEIDLFQSLLAAAAEAIGCSNDEQPSL--KVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL TEMG A+PEL + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFHKIVAALVTEMGEAFPELKGQQAHIERVLKTE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L + +++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-QGKVVPGDVVFKLYDTYGFPMDLTGDIARERELT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A + G+ + SL + AT F+GYD G Sbjct: 420 EAGFEREMEAQRERARSASAFGMD-------YNSLVKVDTATDFLGYDTTEG-------- 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+ + G+ VE+ G++ VV D+TPFYAE+GGQ+GD+G Sbjct: 465 ---------------QGKVIALYKDGQSVEQLTEGEEGVVVLDRTPFYAESGGQVGDSGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K G F+HH ++ G L ++ +D + S+NHSATHLL Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVIASGALTVGATVDARVDADVQHATSLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + + ++K++ED VN + +N V T + Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQIKALEDIVNREVRRNTEVQTEL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+SE Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + +G+RRIEAITG A ++L +E++K A +K ++ N++ ++ + E R+L Q Sbjct: 685 GGVASGVRRIEAITGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744 Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L + K +DLS ++ ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G E K ++ VT+DL + A DL + A + GG GGGRP MAQ GG + DQA Sbjct: 804 GSEHEGKVVLVAGVTKDLSGQLKAGDLMK-QAAAVVGGKGGGRPDMAQGGGVDVASLDQA 862 Query: 889 IAGVASFLKK 898 +A F ++ Sbjct: 863 LALAVPFAEQ 872 >gi|254805364|ref|YP_003083585.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha14] gi|254668906|emb|CBA07085.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha14] Length = 885 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/902 (42%), Positives = 533/902 (59%), Gaps = 68/902 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 14 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 74 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 312 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + ++ IEE L++ Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEALKN 372 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + + Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 430 DEAGFEREMEAQRTRARA-------AQSFKANAQLPYDGQDTEFKGY----------SER 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G + +V D TPFYAE+GGQ+GD G Sbjct: 473 Q-------------TESKVLALYKDGEQVNELNEGDEGAIVIDFTPFYAESGGQVGDVGY 519 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 520 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 580 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY + VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 640 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866 Query: 883 NK 884 K Sbjct: 867 GK 868 >gi|326317055|ref|YP_004234727.1| alanyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373891|gb|ADX46160.1| alanyl-tRNA synthetase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 876 Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/908 (42%), Positives = 538/908 (59%), Gaps = 56/908 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S+V+ IR +FL+FF GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 8 SSVADIRKSFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 68 TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYGLP 127 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + RL TVY ED+EA+ +W K GL +++IRI N DNFW MA+TGPCGPCSE Sbjct: 128 KERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 187 Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G IPGG PGS E+G+R+IEIWN VFMQF+ LP +DTGMGLER+ Sbjct: 188 IFYDHGPHIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERL 247 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A +LQ +NY+IDLF LIQA+ + TG N + +VI DH+R+++FL++DG++P+ Sbjct: 248 AAILQHVHSNYEIDLFAALIQAAGRETGTADLANPSL--KVIADHIRATAFLVSDGVIPS 305 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I E L++ Sbjct: 306 NEGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVKDLVQQMGDAYPKLREQEQRITEVLKA 365 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERF +TL G+ +LD L G ++L GDVAFKL+DT+G PLD+ D+ RG+ + Sbjct: 366 EEERFFETLANGMDILDAALG--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERGVT-V 422 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN A++ Q+++ARA G +K +L+ A +F GYD L Sbjct: 423 DEDGFNAAMDRQKAQARA----AGKFKMDK---ALEYAGEANRFSGYDGL---------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+ + AI G + +GQ VV D TPFYAE+GGQ+GD G Sbjct: 466 -------------AESAKIVAIYVDGTSAQALEAGQNGVVVLDNTPFYAESGGQVGDQGV 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G R + D K ++ HH +E G LR ++ +D R NHS TH++ Sbjct: 513 IHAGGARFAVDDTLKIRADVYGHHGRLESGTLRVGDAVQAEVDAALRAATMRNHSVTHIM 572 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV Q GS + + RFD H+ P+T A+++ IE VN+ I N P R+ Sbjct: 573 HKALREVLGSHVQQKGSLVNAERTRFDFAHNAPVTDAQIREIERRVNEEILANTPTGARV 632 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A +GA L G KY + VRV+ + S LCGGTHV+ TG+I L +V E Sbjct: 633 MDIESAQKTGAMMLFGEKYGETVRVLDIGT------SRELCGGTHVARTGDIGLFKVVGE 686 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S + AG+RRIEA+TG A ++L ++ + A L+ + GR+ + ++ + L + Sbjct: 687 SGVAAGVRRIEAVTGAGALAYLQQLEDTVAKAAGALRAPASELAGRIGQALDQVKALERE 746 Query: 772 LIHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K KL + D + DV ++ + D+K L+ MD L+ K++S I+L Sbjct: 747 VAALKGKLASSQGDELVGQAVDVKGLKVLAATLPGADAKTLRDTMDKLKDKLKSAAIVLA 806 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + VT D++ + A +L A + GG GGG+P MA +GG + A Sbjct: 807 AVDG-AKVQIAAGVTPDVMAKVKAGELVNFVASQV-GGKGGGKPDMAMAGGTDAAALPAA 864 Query: 889 IAGVASFL 896 +A VA ++ Sbjct: 865 LASVAGWV 872 >gi|258592084|emb|CBE68389.1| alanyl-tRNA synthetase [NC10 bacterium 'Dutch sediment'] Length = 886 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/907 (42%), Positives = 542/907 (59%), Gaps = 48/907 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF++NGH ++ SSSL+P DPTL+FTN+GMVPFK +F G + Y+ ++QK Sbjct: 10 IRERFLRFFERNGHTVVASSSLVPAGDPTLLFTNAGMVPFKGVFLGTDPRPYRRAVSIQK 69 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ W LT E +L RL+ Sbjct: 70 CLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEGAIEYGWAFLTCELELPADRLW 129 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y +D+ A +LW++++GL +D+I+R+ DNFWSM ETGPCGPCSE+ FDQG I G Sbjct: 130 ATIYKDDDAAGELWQRLTGLPSDRIVRLGEKDNFWSMGETGPCGPCSELIFDQGPTIGCG 189 Query: 187 LPGSSEE--GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P + E +RY+E+WNLVFMQF + LPK SIDTG GLERMA V Q T+N+ Sbjct: 190 RPTCTIECGCDRYLELWNLVFMQFNRDASGTLTPLPKPSIDTGAGLERMAAVCQGVTSNF 249 Query: 245 DIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 + DL + LI E+++ +Y + + ++ RVI DH R+ +F +ADG+LP+NEGRGYVLR Sbjct: 250 ESDLIRPLIATVEELSQKRYGADEKDDISMRVIADHARAVTFALADGVLPSNEGRGYVLR 309 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + RLLG EP + + M AYPEL ++ +E E++RFG L Sbjct: 310 RILRRALRHGRLLGLDEPFLASTTHRVIDLMTDAYPELPASRAHVERLAWIEEDRFGIVL 369 Query: 363 DRGLV----LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 L L++ + S + IL G F+LYDT+G+P D++ +I + + G D F Sbjct: 370 REALPRLHDLIEKIKSQTAEQAILPGSKLFELYDTYGVPRDLIDEIAVEQSV-GCDWNGF 428 Query: 419 NQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 L QR +RAH G G E +K + T F+GY+ L Sbjct: 429 EIELRHQRETSRAHLKAFGDVQGVAEAFHDLVKTRR--TVFLGYERL------------- 473 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 DL +S+V IV G V+ GQ+ EVV DQTPFYAE+GGQ+GD G G Sbjct: 474 ------DLE---ASVVAVIV-GGTQVDRMGVGQEGEVVLDQTPFYAESGGQVGDAGYLRG 523 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG+ ++ D ++ G+ VH V+RG R+ L+ +++ R NH+ATHL+H A Sbjct: 524 DGVLAEVLDTKRPLAGLIVHRVRVKRGEFRSGQRLLASVEADRRSTTVKNHTATHLVHAA 583 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG HV Q GS + PD LRFD H P++ AE+ IE+ VN + N+PVV M Sbjct: 584 LRQILGDHVRQEGSLVAPDRLRFDFRHYGPVSPAEITQIEEMVNAKLWANVPVVVEEMRL 643 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A+A GA A G KY D VRVV V S LCGGTH STGEI LL I E+ + Sbjct: 644 DEALAKGALAFFGDKYGDEVRVVGV-----ADFSIELCGGTHTKSTGEIGLLKIAHETGV 698 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQL 772 AGIRRIEA+TG A +L + E L+ A LK V +VE +++ R++Q Sbjct: 699 AAGIRRIEALTGPGAFQYLKREGEVLRESADRLKSKPLEVPEKVERLFDSARAFEREVQR 758 Query: 773 IHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + AK ++ E L+ +++ V ++ ++ + D + L+ ++D ++ KI+SG+I+L S Sbjct: 759 LRAKLGAEMAEELLNKATRVSGVMVVAGLVEQCDQRALRELVDRVKTKIESGVIVLA-TS 817 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + + + VT DL R +A L + A + GG GGGR +A++GG N ++ D+A+ Sbjct: 818 LDGRVGWVAAVTPDLTSRLHAGKLVKEVANIT-GGSGGGRADLAEAGGKNLDELDRALQL 876 Query: 892 VASFLKK 898 V +K+ Sbjct: 877 VPELVKQ 883 >gi|238758257|ref|ZP_04619436.1| Alanyl-tRNA synthetase [Yersinia aldovae ATCC 35236] gi|238703587|gb|EEP96125.1| Alanyl-tRNA synthetase [Yersinia aldovae ATCC 35236] Length = 847 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/885 (43%), Positives = 545/885 (61%), Gaps = 58/885 (6%) Query: 28 LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87 ++P NDPTL+FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHH Sbjct: 1 MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60 Query: 88 TFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISG 145 TFFEMLGNFSFG YFK AI AW+LLT E F+L + +L++TVY+ D+EA+++W G Sbjct: 61 TFFEMLGNFSFGDYFKHDAISFAWELLTGEQWFNLPKEKLWVTVYETDDEAYEIWANEVG 120 Query: 146 LSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERY 197 + ++IIRI N DNFW M +TGPCGPC+EIFFD G+ I GG PGS++E G+RY Sbjct: 121 VPCERIIRIGDNKGGAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAQEDGDRY 180 Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257 IEIWN+VFMQF +Q+ LPK S+DTGMGLER+A VLQ +NY+IDLF+ LI+A Sbjct: 181 IEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVA 240 Query: 258 QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317 +VTG + + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ + +LG Sbjct: 241 EVTGAADLSSKSL--RVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGA 298 Query: 318 TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG 377 E L+ L MG A EL Q + ++E+ L++E+E+F +TL+RGL LLD LS L Sbjct: 299 KETFFYKLVAPLIAVMGPAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLT 358 Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437 D L+G+ AF+LYDT+G P+D+ D+ R L +D F QA+E QR RAR S G G Sbjct: 359 GD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFG 415 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 + + SL A+QF GYD + + V A+ + Sbjct: 416 AD-----YNSLIRVDSASQFSGYDHVH-----------------------QQATVTALFR 447 Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH 557 GE V+E +G++ VV +QTPFY E+GGQ+GD G + D QK + I H Sbjct: 448 NGEAVDEIHAGEEAVVVLNQTPFYGESGGQVGDKGELKNATAVFTVVDTQKYGQAIG-HL 506 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 + +G LR S+ +D R ++ +NHSATHLLH AL LG HV+Q GS + L Sbjct: 507 GQLTQGTLRVNHSVDAQVDVARRNRIRLNHSATHLLHAALRKTLGEHVAQKGSLVNDKYL 566 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677 RFD +H + + +++ +ED VN+ I +NLPV T +M + A GA AL G KY+D+VR Sbjct: 567 RFDFSHFEAMKPEQIRQVEDLVNEQIRRNLPVETEVMELDTAKEKGAMALFGEKYDDQVR 626 Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 V+++ G S+ LCGG H S TG+I L I+SES AGIRRIEA+TG+ A + L Sbjct: 627 VLTM-----GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIAQLHQ 681 Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIAD 793 Q + L+ +A +K N+ +V + + R+LQ + ++ Q + S K+ Sbjct: 682 QSDLLQDVAHLVKGDTHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLVK 741 Query: 794 -VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852 + + V+ K L++++D L+ ++ S II+L + + K S+++ VT+DL + A Sbjct: 742 GAKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLA-TAADDKVSLIVGVTKDLTGKVKA 800 Query: 853 VDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +L A ++ +V GG GGGRP MAQ+GG + A+A V +++ Sbjct: 801 GELIADIAQQV--GGKGGGRPDMAQAGGTDVQALPSALASVEAWV 843 >gi|77460496|ref|YP_350003.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1] gi|123603611|sp|Q3K892|SYA_PSEPF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|77384499|gb|ABA76012.1| alanyl-tRNA synthetase [Pseudomonas fluorescens Pf0-1] Length = 874 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/914 (43%), Positives = 540/914 (59%), Gaps = 65/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y + Sbjct: 4 AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWNFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYASDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF+ L+ AS + G + + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQSLLAASAKAIGCTNDAQ--ASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYLIVAALVAEMGEAFPELKSQQAHIERVLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K +++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLKILEQDLAEL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERSLT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR A S GL + K+ T+F GY G Sbjct: 420 EAGFEREMEAQRVRARSASSFGLDYNSLVKVDVD-------TEFTGYHATSG-------- 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+ V A+ + G+ V+ GQ+ VV +QTPFYAE+GGQ+GD G Sbjct: 465 ---------------SAKVVALYKDGQSVDVLSEGQEGVVVLNQTPFYAESGGQVGDCGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K G F+HH ++ G L + ++ R S+NHSATHLL Sbjct: 510 LQAGNSRFDVRDTTKTG-GAFLHHGVLASGSLIVGAPVETHVEADVRHATSLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + I ++K++ED VN I +N V T Sbjct: 569 HAALRKVLGDHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDIVNAEIRKNSAVETEE 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A GA AL G KY D VRV+S+ GG S LCGG H + TG+I LL I+SE Sbjct: 629 TDIETAKQKGAMALFGEKYGDNVRVLSM----GGDFSVELCGGIHANRTGDIGLLKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + +G+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R L+ Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALE-- 742 Query: 774 HAKRKLQLNV-------EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K+ QL +DLS + V ++ + D K L +++D L+ K+ + Sbjct: 743 --KQLEQLQAKAAAAAGDDLSASAVDVKGVKVLAVRLDGQDGKALLALVDQLKNKLGRAV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L G E+K ++ VT+DL + A DL + A GG GGGRP MAQ GG + Sbjct: 801 ILL-GSVHEEKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGGVDAGA 858 Query: 885 ADQAIAGVASFLKK 898 D A+A F+++ Sbjct: 859 LDGALALTVPFVEQ 872 >gi|160871945|ref|ZP_02062077.1| alanyl-tRNA synthetase [Rickettsiella grylli] gi|159120744|gb|EDP46082.1| alanyl-tRNA synthetase [Rickettsiella grylli] Length = 871 Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/887 (41%), Positives = 538/887 (60%), Gaps = 53/887 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N +++R FL +F+K GH ++PS+SLIP +DP+L+FTN+GMVPFK++F G E+ Y Sbjct: 2 NSNALRQLFLNYFKKQGHTIVPSASLIPAHDPSLLFTNAGMVPFKDVFLGLEQRSYSRAA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI L+W +T+E L Sbjct: 62 SVQRCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAILLSWKFMTEELGLSP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L+ITV+ ED+EA +W ++ + R DNFWSM +TGPCGPCSEIF+D G Sbjct: 122 EKLWITVFTEDDEAANIWLNEVKINPKRFSRCGRQDNFWSMGDTGPCGPCSEIFYDYGPG 181 Query: 183 IPGGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I GG PG S+ G+RY+EIWNLVFMQ+++ + LPK S+DTGMGLER+A V+Q T Sbjct: 182 ISGGAPGTSTASGDRYVEIWNLVFMQYQRSFDGKHIALPKPSVDTGMGLERLAAVMQGVT 241 Query: 242 NNYDIDLFKHLIQ-ASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NN+D DLF LI+ +++ + + ++ RVI DH+R+ +FLI+DG+ P NEGR YV Sbjct: 242 NNFDTDLFLPLIKIVAKEASLTDFTTTSL---RVIADHIRACAFLISDGVYPGNEGRSYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + +G P L+ L +M AYP L++ + IE+ L E+++F + Sbjct: 299 LRRIIRRAVRHGHKIGLDRPFFYRLVRPLALQMQHAYPALVEKQKFIEKILLEEEQKFAR 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL +GL L + L L + G VAF+LYDT+G P+D+ D+ RGL ID+ F Sbjct: 359 TLTQGLKLFEQELDKLKDKKQFPGLVAFRLYDTYGFPVDLTADMARERGLV-IDMAGFTT 417 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 ++ Q+ +++ S TT + S K+ AT+F+GY +E + P Sbjct: 418 EMDAQKKKSKEAS---HFSTTPHVHSSEKK---ATEFVGYK-------TREQADI----P 460 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 IDL + ++ EE G++ VV +TPFYAE+GGQ+GDTG + R Sbjct: 461 IIDL-----------LDDKDLKEELAEGEEGFVVLTKTPFYAESGGQVGDTGYLVNATSR 509 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + KK + +H + +G L+ + +D + R ++NHSATHLLH L I Sbjct: 510 FFVITTLKKGS-LILHRGQLIKGHLKKGDKVKAEVDPKKRHATTLNHSATHLLHAVLREI 568 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+ V Q GS + P+ LRFD ++S P+T +LK IE+ VN I NLPVVT++M+ EDA Sbjct: 569 LGTQVMQKGSLVEPERLRFDFSYSSPLTCEQLKLIENRVNWQIRANLPVVTQVMSMEDAK 628 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +GA AL G KY + VRV+++ G S LCGGTHVS TG+I L I ESS+ G+ Sbjct: 629 KAGALALFGEKYGNNVRVLTI-----GTFSKELCGGTHVSQTGDIGLFKITEESSVSTGV 683 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKL 779 RRI+A+TGQ A + ++++ LA S+ V E++ E + Q + K L Sbjct: 684 RRIQALTGQYALDWVAALEDQMNQLAKLFHTSKDTV---FEKVCLEVKTKQSLQKKIAAL 740 Query: 780 QLNV-----EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 Q ++ E+L I +N + ++ +DS L+ ++D L+ K++ +I+L I + Sbjct: 741 QQSIVAMMGEELVSQALTIKGINLLISEMNGIDSAGLRFLVDQLKNKLKPAVIVLTSI-E 799 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +K +++ VT++L+ + A +LA S + GG GGGR AQ+GG Sbjct: 800 QKNVQLVVGVTKELVGKIKANELAH-SLALTMGGRGGGRADFAQAGG 845 >gi|238753177|ref|ZP_04614619.1| Alanyl-tRNA synthetase [Yersinia rohdei ATCC 43380] gi|238708604|gb|EEQ00880.1| Alanyl-tRNA synthetase [Yersinia rohdei ATCC 43380] Length = 846 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/887 (43%), Positives = 548/887 (61%), Gaps = 61/887 (6%) Query: 28 LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87 ++P NDPTL+FTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHH Sbjct: 1 MVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHH 60 Query: 88 TFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISG 145 TFFEMLGNFSFG YFK AI AW+LLT + F+L + +L++TVY+ D+EA+++W G Sbjct: 61 TFFEMLGNFSFGDYFKHDAISFAWELLTSGQWFNLPKEKLWVTVYETDDEAYEIWANEIG 120 Query: 146 LSADKIIRIT------TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYI 198 + ++IIRI +DNFW M +TGPCGPCSEIF+D G+ I GG PGS EE G+RYI Sbjct: 121 IPHERIIRIGDKGAPFASDNFWQMGDTGPCGPCSEIFYDHGDHIWGGPPGSPEEDGDRYI 180 Query: 199 EIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQ 258 EIWN+VFMQF +Q+ LPK S+DTGMGLER+A VLQ NY+IDLF+ LI A + Sbjct: 181 EIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNTNYEIDLFRDLIAAVAE 240 Query: 259 VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318 VTG N + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ + +LG Sbjct: 241 VTGAT--DLNSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNILGAK 298 Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378 E L+ L MGSA EL Q + ++E+ L++E+E+F +TL+RGL LLD LS L Sbjct: 299 ETFFYKLVGPLIAVMGSAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLTG 358 Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438 D L+G+ AF+LYDT+G P+D+ D+ R L +D F QA+E QR RAR S G G+ Sbjct: 359 D-TLDGETAFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFGA 415 Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498 + SL A+QF GYD + + V A+ + Sbjct: 416 D-----YNSLIRVDSASQFSGYDHVH-----------------------QQATVTALFRN 447 Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558 GE V+E G++ VV +QTPFY E+GGQ+GD G ++D QK + I H Sbjct: 448 GEAVDEIHEGEEAVVVLNQTPFYGESGGQVGDKGELKNATATFAVSDTQKYGQAIG-HLG 506 Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 + G LR S+ +D R ++ +NHSATHLLH AL LG HV+Q GS + LR Sbjct: 507 QLTHGTLRVNHSIDAQVDVARRNRIRLNHSATHLLHAALRKTLGEHVAQKGSLVNDKYLR 566 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678 FD +H + + +++ +ED VN+ I +N+PV T +M E A GA AL G KY+D+VRV Sbjct: 567 FDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELEAAKEKGAMALFGEKYDDQVRV 626 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 +++ G S+ LCGG H S TG+I L I+SES AGIRRIEA+TG+ A + L Q Sbjct: 627 LTM-----GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQQ 681 Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIADV 794 + L +A +K + +V + + R+LQ + ++ Q + S K+ V Sbjct: 682 SDLLADVAHLVKGDTHTLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSNAKL--V 739 Query: 795 NFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851 N + ++S++D+ E L++++D L+ ++ S II+L + + K S+++ VT+DL + Sbjct: 740 NGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLA-TTADDKVSLIVGVTKDLTSKVK 798 Query: 852 AVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 A +L A ++ +V GG GGGRP MAQ+GG + + A+A V ++++ Sbjct: 799 AGELIADIAQQV--GGKGGGRPDMAQAGGTDVHALPSALASVEAWVE 843 >gi|229592147|ref|YP_002874266.1| alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25] gi|229364013|emb|CAY51570.1| alanyl-tRNA synthetase [Pseudomonas fluorescens SBW25] Length = 872 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/890 (44%), Positives = 531/890 (59%), Gaps = 57/890 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F GQEK Y T+ Sbjct: 4 AEIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGK++DL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW LT L + + Sbjct: 64 QKCVRAGGKNSDLENVGYTARHHTFFEMLGNFSFGDYFKKDAITFAWTFLTGVLKLPKEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY D+EA+ +W + G+ +++IRI N DNFW+M +TGPCGPC+EIF+ Sbjct: 124 LWVTVYATDDEAYDIWTQQIGVPVERMIRIGDNKGAPYASDNFWTMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ V Sbjct: 184 DHGADIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERISAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +Q +NY+IDLF +L+ AS G E + + +V+ DH+RS FLIADG+LP+NEG Sbjct: 244 MQHVHSNYEIDLFTNLLSASAAAIGCANESQSSL--KVVSDHIRSCGFLIADGVLPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA + LG T ++ AL EMG A+PEL Q + IE L++E+E Sbjct: 302 RGYVLRRIIRRACRHGNKLGATGSFFYKIVAALVAEMGEAFPELKQQQGNIERVLKAEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +F KTL+ GL +L+ L+ L K ++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 362 QFSKTLEHGLKILEQDLAEL-KGTVVPGDVVFKLYDTYGFPMDLTADIARERELT-IDEA 419 Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + +E QR RAR A S GL T K+ T+F GY Sbjct: 420 GFEREMEAQRVRARSASSFGLDYNTLVKVDVP-------TEFTGY--------------- 457 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 T G + IV A+ + G+ V+ G + VV DQTPFYAE+GGQ+GD G Sbjct: 458 -------KATVGAAKIV-ALYKDGKSVDVLSEGDEAVVVLDQTPFYAESGGQIGDCGFLS 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 R ++ D K G F+HH ++ G L + +D R ++NHSATHLLH Sbjct: 510 STSGRFEVRDTTKTG-GAFLHHGVLVLGNLTVGAPVDTQVDADVRHATALNHSATHLLHA 568 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + LRFD +H + I ++K++ED VN I +N V T + Sbjct: 569 ALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQIKALEDVVNAEIRRNTAVETEETD 628 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A A GA AL G KY D VRV+S+ GG S LCGG H + TG+I LL I+SE Sbjct: 629 IETAKAKGAMALFGEKYGDNVRVLSM----GGDFSVELCGGIHANRTGDIALLKIISEGG 684 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQ 771 + +G+RRIEA+TG A ++L +E+LK AS +K S+ N++ ++ + E R +L+ Sbjct: 685 VASGVRRIEAVTGAAALAYLNAAEEQLKEAASLVKGSRDNLIDKLSAVLERNRALEKQLE 744 Query: 772 LIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + AK +DLS + DV ++ + D K L +++D L+ K+ +I+L G Sbjct: 745 QLQAKAASAAG-DDLSASAVDVKDVKVLAARLDGQDGKALLALVDQLKNKLGRAVILL-G 802 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 803 SVHEDKVVLVAGVTKDLTGQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 851 >gi|257454192|ref|ZP_05619462.1| alanyl-tRNA synthetase [Enhydrobacter aerosaccus SK60] gi|257448365|gb|EEV23338.1| alanyl-tRNA synthetase [Enhydrobacter aerosaccus SK60] Length = 890 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/914 (41%), Positives = 542/914 (59%), Gaps = 65/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+ +F +NGH + SSSL+P NDPTL+FTN+GM FK++F G +K Y+ + Sbjct: 8 ADIRQAFINYFAENGHTPVASSSLVPHNDPTLLFTNAGMNQFKDVFLGIDKRDYKRAVSS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK++AI W+ LT K L + Sbjct: 68 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQQAIPFCWEFLTSDKWLGLPK 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +LY+TVY D+EAF +W + GL A++IIRI N DNFW+M +TGPCGPC+E+ Sbjct: 128 DKLYVTVYHTDDEAFDIWHNVVGLPAERIIRIGDNKGGQYQSDNFWAMGDTGPCGPCTEV 187 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GGLPG+ EE G+R++EIWN VFMQF +Q LP S+DTGMGLER++ Sbjct: 188 FYDHGEHIWGGLPGTPEEDGDRFVEIWNNVFMQFNRQKDGTLEKLPAPSVDTGMGLERIS 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----VNHRVIVDHLRSSSFLIADG 289 ++Q +NY+ID+F HL+Q + QV G+ N+I + +V+ DH+RS SFLIADG Sbjct: 248 AIMQGVHSNYEIDIFTHLMQHAAQVIGLP---NDIDLQSEPSLKVLADHIRSVSFLIADG 304 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 +LP+NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + + IE+ Sbjct: 305 VLPSNEGRGYVLRRIIRRAVRHGNKLGATDNFFYKLVAPLAQIMGDAYPQLREQQANIEQ 364 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 + E+E+F KTL +GL LL L L + L+G FKLYDT+G P D+ DI+ R Sbjct: 365 AILKEEEQFAKTLSQGLKLLSQELDSLKSGDTLSGATVFKLYDTYGFPADLTADIVRERD 424 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ++ ID F Q + +QR+RAR +G + L + AT+F+GYD Sbjct: 425 IS-IDEAGFEQGMAQQRARARE------AGKFGVDYNQLIQVDSATEFLGYDKAEH---- 473 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 SS + + +G+ E+ G + +V TPFYAE GGQ G Sbjct: 474 -------------------SSTITHLYLEGKSAEQLQEGDEGVIVLSATPFYAEGGGQAG 514 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 + G + ++ D +K + I +HH +V+ G +R S + Q R + NHSA Sbjct: 515 ELGDIQTETGVFEVQDTKKSGQAI-IHHGVVKMGSIRQGQSSEARVASQVRAMSAKNHSA 573 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL LG+ V+Q GS + + LRFD ++ K +T ++ +IE+ VN I N P Sbjct: 574 THLLHAALREHLGTGVTQKGSLVNSEVLRFDFSYDKALTEQDIITIENIVNQQILANQPA 633 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIML 707 +++ A GA AL G KY D VRV+S+ +DG S LCGG HV TG+I L Sbjct: 634 TVEMLSMTQAQDKGAMALFGEKYGDTVRVLSMGTVDKDGKPFSIELCGGLHVQRTGDIGL 693 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSE I AGIRRIEA+TG A ++ +++L LAS LK + + RV ++ ++ Sbjct: 694 FKIVSEQGIAAGIRRIEAVTGMGAVKYVQQGEKQLNQLASQLKAKRDEIADRVNQMTDKT 753 Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822 R L QL ++KL + + + D+N +I+ + D K L+++ D ++ K+ Sbjct: 754 RDLEKQLERLQQKLASSQAKDLINNVQDINGQKVLIASLPGMDGKALRTIADDMKSKLHD 813 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 GI++L G++ +K A + V +DL + A D+ + ++ L GG GGG+P AQ G + Sbjct: 814 GIVVLAGVADDKIA-LTASVGKDLTSKIKAGDIIKHLSEQL-GGKGGGKPDFAQGGATD- 870 Query: 883 NKADQAIAGVASFL 896 +AG+ + L Sbjct: 871 ------VAGLPTVL 878 >gi|291614561|ref|YP_003524718.1| alanyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1] gi|291584673|gb|ADE12331.1| alanyl-tRNA synthetase [Sideroxydans lithotrophicus ES-1] Length = 873 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/910 (42%), Positives = 542/910 (59%), Gaps = 60/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL++F GH ++ SSSL+P DPTL+FTN+GM FK++F G +K Y + Sbjct: 4 SEIRQKFLDYFASKGHTVVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYTRAASS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT+ F L + + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKYAWELLTEVFKLPKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 LY+TVY ED+EA+ +W K GL+AD++IRI N DNFW M +TGPCGPC+EIF+ Sbjct: 124 LYVTVYAEDDEAYDIWTKKVGLAADRVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G IPGGLPG+ EE G+RYIEIWN VFMQF + LPK S+DTGMGLER++ V Sbjct: 184 DHGAHIPGGLPGTPEEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERISAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ NY+IDLF+ LI+A+ + T + + RV+ DH+R+ SFLIADG++P NEG Sbjct: 244 LQHVHANYEIDLFQALIKAAARETNQT--NLDQPSLRVLADHIRACSFLIADGVIPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG E ++P L +MGSAYPEL+ ++ ++ L+ E+E Sbjct: 302 RGYVLRRIIRRAIRHGYKLGAREAFFYKMVPDLVEQMGSAYPELVAEQVRVKGILKLEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF T++ G+ +L+ L+ + K ++ NG+ AFKL+DT+G PLD+ DI RG+ +D Sbjct: 362 RFFATIEHGMAILEADLAEMEKAGGKVFNGETAFKLHDTYGFPLDLTADICRERGVK-VD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL--RGSKFMKED 472 +FN A+ Q+ +ARA K+ +L+ AT F GY+ L +G+ Sbjct: 421 DAAFNAAMARQKEQARA-------AGKFKMAANLEYSGPATTFHGYESLEHKGN------ 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + A+ + G V E G VV D TPFYAE+GGQ+GD+G Sbjct: 468 -------------------ILALYKDGVEVNELNEGDLGVVVLDDTPFYAESGGQVGDSG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D QK +F HH +V+ G L + +D R + NHSATHL Sbjct: 509 ELRSVHGIFAVEDTQKIQASVFGHHGVVKTGKLSVGNGVTARVDVAARSRTMRNHSATHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV Q GS + D RFD H++P++ AE++ +E VN I N +R Sbjct: 569 MHKALREVLGTHVQQKGSQVDADKTRFDFVHTQPMSDAEIRKVEAIVNAEILSNAECQSR 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M E+A +GA L G KY D VRV+++ S LCGGTHV TG+I L IV+ Sbjct: 629 VMPIEEAQKTGAMMLFGEKYGDVVRVLNIG------SSIELCGGTHVKRTGDIGLFKIVA 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES + AG+RR+EA+TG+ A + + Q+ +L+ +A +K R+ +I + + L Sbjct: 683 ESGVAAGVRRVEAVTGEGALALVQQQEVQLQQVADAVKAQPQEAAARITQILDNVKSLEK 742 Query: 771 QLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +L K KL D ++ V ++ + D+ L+ +D L+ K++S ++L Sbjct: 743 ELAALKSKLASAQGDELLAQAQDVSGVKVLAAKLDGADAAVLRETLDKLKDKLKSAAVVL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 ++ E K S++ VT D + A +L A+ + GG GGGRP MAQ+GG + Sbjct: 803 ASVA-EGKVSLIAGVTADATAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPEHLAK 860 Query: 888 AIAGVASFLK 897 A+A V ++K Sbjct: 861 ALASVPDWVK 870 >gi|88706721|ref|ZP_01104423.1| Alanyl-tRNA synthetase [Congregibacter litoralis KT71] gi|88699042|gb|EAQ96159.1| Alanyl-tRNA synthetase [Congregibacter litoralis KT71] Length = 867 Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/899 (42%), Positives = 547/899 (60%), Gaps = 48/899 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL F+ +GH+ +PSSSL+P +DPTL+FTN+GM FK++F G E Y + Q+ Sbjct: 6 IREAFLAHFESHGHQRVPSSSLVPADDPTLLFTNAGMNQFKDVFLGAETRSYSRAVSAQR 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AWD LT E L + +L+ Sbjct: 66 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRFAWDFLTVELGLPREKLW 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TV+ D+EA K+W + G A++I R+ DNFW M +TGPCGP SE+F+D GE +PGG Sbjct: 126 VTVHITDDEAEKIWIEDIGFPAERISRL-DEDNFWQMGDTGPCGPSSEVFYDHGEDVPGG 184 Query: 187 LPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 PGS ++ +RYIEIWNLVFMQ+ + E LPK S+DTGMGLER+A +LQ +NYD Sbjct: 185 PPGSPDDDLDRYIEIWNLVFMQYNRSADGEMAPLPKPSVDTGMGLERIAAILQGVHSNYD 244 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 IDLF+ LIQ++ ++ G + + RVI DH+RSS+FLI DG+LP NEGR YVLRRIM Sbjct: 245 IDLFQALIQSAAEMVGT--DDLKASSLRVIADHIRSSAFLIIDGVLPGNEGRSYVLRRIM 302 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA+ + LG L+P+L EMG YPEL + + IE+ +R E+E+F +TL++G Sbjct: 303 RRAIRHGNKLGADALFFHKLVPSLVAEMGDFYPELREQQTRIEDVIRGEEEQFARTLEQG 362 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 +V+L+ L+ + ++ GDV FKLYDT G P+D+ DI R + +D+ + A++ Q Sbjct: 363 MVILNEALAEM-SGTVIPGDVVFKLYDTFGFPVDLTNDIARERDFS-LDMEGYEAAMQAQ 420 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 R R++ G + G T F GYD G Sbjct: 421 RERSKE------GGAFAVDYNRTLTLDGETLFTGYDESTG-------------------- 454 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 S V A+++ GE V +G V+ D+TPFY E+GGQ GD+G +G+RL+I+D Sbjct: 455 ---SGTVVALLRDGEEVNALTAGDNGIVILDRTPFYGESGGQAGDSGYLRSNGLRLEISD 511 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 KA G +HH V G + ++ ID R++ +NHSATHLLH AL LG HV Sbjct: 512 T-TKARGHHLHHGKVLEGSIALGDTVECEIDNAIRQKTRLNHSATHLLHAALRYELGDHV 570 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + LRFD ++ + +T +L+++ED+VN I N+ V T+IM+ ++A +GA Sbjct: 571 AQKGSLVDGQRLRFDFSNPEAMTPEQLRAVEDSVNAQIRANVEVTTQIMSMDEAREAGAM 630 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY D VRV+++ E+G S LCGGTHV TG+I + I+SE + +G+RRIEA Sbjct: 631 ALFGEKYGDEVRVLTMG-ENG--FSVELCGGTHVERTGDIGMFRILSEGGLASGVRRIEA 687 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNV 783 +TG+ A + D L + L+ + NV +V + + R L +L K+KL + Sbjct: 688 VTGEHALREMRTVDHALGEVCELLRATTDNVRDKVAALRSQNRDLEKELARLKQKLASSA 747 Query: 784 -EDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 D++ I DV+ + + + VD + L+ +MD + K+ SG+I+L ++ +K A ++ Sbjct: 748 GSDITASAI-DVDGVKVLAAAVDGADPGALRGIMDQCKNKLGSGVILLAAVNDDKVA-LV 805 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 VT+DL +R A DL R A L GG GGGRP MAQ GG A+ V +++ + Sbjct: 806 AGVTKDLTERVRAGDLMREFAGRL-GGKGGGRPDMAQGGGTEPALLPAALEAVPAWVAE 863 >gi|56475970|ref|YP_157559.1| alanyl-tRNA synthetase [Aromatoleum aromaticum EbN1] gi|81598995|sp|Q5P7Q3|SYA_AZOSE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56312013|emb|CAI06658.1| Alanyl-tRNA synthetase [Aromatoleum aromaticum EbN1] Length = 873 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/906 (41%), Positives = 543/906 (59%), Gaps = 56/906 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH+++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 4 AEIREKFLKFFESKGHQIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+EF L + + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAITYAWELLTEEFGLPKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY +D+EA+ +W K G+ A+++IRI N DNFW M +TGPCGPC+EIF+ Sbjct: 124 LWVTVYADDDEAYDIWTKEIGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS E+G+RYIEIWN VFMQF + LP+ S+DTGMGLER++ V Sbjct: 184 DHGPEIWGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPRPSVDTGMGLERVSAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF+ LI+A+ + TG + + +VI DH+R+ SFLIADG++P NEG Sbjct: 244 LQHVHSNYEIDLFQTLIRAAARETGCA--DLDSPSLKVIADHIRACSFLIADGVIPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG L+P L TEMG AYPEL + + + L+ E+E Sbjct: 302 RGYVLRRIIRRAIRHGYKLGSRAAFFHRLVPDLVTEMGPAYPELKAGQARVADVLKQEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF T++ G+ +L+ L+ + NG+ AFKL+DT+G PLD+ D+ R + +D Sbjct: 362 RFFATIENGMAILETELAAMATAGSRTFNGETAFKLHDTYGFPLDLTADVCRERDVT-VD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F+ A+ Q+ +ARA ++ +L+ + T+F GY+ L E+R Sbjct: 421 AAAFDAAMARQKEQARA-------AGKFRMAMNLEYEGPETKFHGYERL-------EER- 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 466 ---------------GTVLALYKDGAPVVELQEGDIGVVVLDNTPFYAESGGQVGDRGEL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G ++ D QK ++ HH +V+ G L L +D + R NHS THL+H Sbjct: 511 RGSAGIFEVEDTQKIQAAVYGHHGVVKTGRLAVGQELGARVDGEARASTQRNHSVTHLMH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + PD RFD H+ P++ E++ +ED VN I N+ R+M Sbjct: 571 KALREVLGAHVQQKGSQVDPDKTRFDFAHTAPLSPEEIREVEDLVNAEILANVATEARVM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + +DA SGA L G KY D VRV+++ S LCGGTHV+ TG+I L IVSE Sbjct: 631 SIDDAQKSGAMMLFGEKYGDEVRVLAIG------SSKELCGGTHVARTGDIGLFKIVSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+TG A + Q+ +++ +++ LKV V R+ I + R L +L Sbjct: 685 GVAAGVRRIEAVTGANALRYAQEQERRVQGISALLKVQPDEVAERIAGILDNVRALEKEL 744 Query: 773 IHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K +L + D + +V ++ ++ D L+ +D L+ K++S +I+L Sbjct: 745 ARMKSRLAASQGDELVAQAVEVRGAKVLAAMLEGADVATLRETLDKLKDKLKSAVIVLAA 804 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + + S++ VT DL + A +L + A+ + GG GGGRP MAQ+GG + A+ Sbjct: 805 VA-DGRVSLIAGVTSDLTAKLKAGELVNMVAQQV-GGKGGGRPDMAQAGGTDPAHLPAAL 862 Query: 890 AGVASF 895 A V ++ Sbjct: 863 ASVKAW 868 >gi|283853948|ref|ZP_06371151.1| alanyl-tRNA synthetase [Desulfovibrio sp. FW1012B] gi|283570662|gb|EFC18719.1| alanyl-tRNA synthetase [Desulfovibrio sp. FW1012B] Length = 880 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/910 (44%), Positives = 550/910 (60%), Gaps = 64/910 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL+FF GH+ + SS LIP DPTL+FTN+GMV FK +F GQ+KP Y+ Sbjct: 1 MMTANEIRAKFLDFFAAQGHQKVASSPLIPREDPTLLFTNAGMVQFKKVFLGQDKPGYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW LT+ L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTEVIGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY TVY +D+EA LWKKI+GL+ D+I R+ DNFWSM +TGPCGPCSEI FD+G Sbjct: 121 DKSRLYATVYLDDDEAHGLWKKIAGLTDDRIFRLGEKDNFWSMGDTGPCGPCSEIMFDRG 180 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E C P G+ + +RY+EIWNLVFMQ++Q R LP+ SIDTGMGLER+A V+ Sbjct: 181 EEVSCGPDCGIGTC-DCDRYLEIWNLVFMQYDQIAPGNRVALPRPSIDTGMGLERIAAVV 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295 Q +N+DIDLFK +I ++ + G+ Y N+ + RVI DH RS +FL+ADG++P+NE Sbjct: 240 QGVHSNFDIDLFKAIIASAATIAGVAYGHNDEHDTALRVIADHSRSVAFLLADGVMPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + +L+G ++P + + MG A+PEL+ + +E +R E+ Sbjct: 300 GRGYVLRRLIRRALRFGKLIGLSDPFLYKTAGTVVDVMGDAFPELLAGREFMERVVREEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERFG TLD+GLV+L L LG+ + +++G AFKLYDT+G PLDI+ D+ RG+A Sbjct: 360 ERFGVTLDKGLVILAEELDRLGEAGEAVISGQFAFKLYDTYGFPLDIVNDVAGKRGMAA- 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D + + EQ++RA+ G G ++ L E ++F+GYD L G+ Sbjct: 419 DEDGYRACMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFVGYDALTGA------- 471 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V+++V A +G+ VE V+G+ +V TPFY E+GGQ GD G Sbjct: 472 ------------SRVNALVSA---EGQAVERLVAGETGYMVCAVTPFYGESGGQSGDVGL 516 Query: 534 A---IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 GD + K + HH V++G + + L +D R + NH+AT Sbjct: 517 VSTLTGDA---AVIGAIKAGPDLTAHHIEVKKGEILLDQEAELAVDPAVRAATARNHTAT 573 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LGSHV+Q GS +TPD LRFD TH +T EL +ED VN I + PVV Sbjct: 574 HLLHKALKNVLGSHVNQAGSLVTPDRLRFDFTHIAAMTPDELARVEDEVNAAILLDAPVV 633 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M + A A GA AL G KY D VRVV V GV + CGGTH+ +TG+ I Sbjct: 634 TEVMGIDAARAKGATALFGEKYGDEVRVVEVP----GV-TMEFCGGTHLRATGQAGSFLI 688 Query: 711 VSESSIRAGIRRIEAITGQRARSH---LMGQ-DEKLKSLASFLKVSQGNVVGRVEEIWEE 766 +SES + AG RRIEA TG A H + G+ DE LK+ LK G +V RV++++++ Sbjct: 689 LSESGVAAGTRRIEAATGLNALRHVREMRGEYDEGLKT----LKAKPGELVPRVKKLFDD 744 Query: 767 YRKLQLIHAKRKLQL-------NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 R L K K QL DL ++ V + + + K L+ MD L+ Sbjct: 745 IRAL----GKEKEQLAGKLASGQGRDLMAGLEEVGGVKLLCARVDAPNVKALREAMDDLR 800 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K+ SG+I L ++ K S+++ V++DL RF A L + A GG GGGRP MAQ+ Sbjct: 801 SKLPSGVIALAAEQEDGKVSLIVAVSKDLHARFTAPVLIK-DAAASVGGSGGGRPDMAQA 859 Query: 878 GGPNGNKADQ 887 GG N D+ Sbjct: 860 GGTNPAGIDE 869 >gi|313672790|ref|YP_004050901.1| alanyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672] gi|312939546|gb|ADR18738.1| alanyl-tRNA synthetase [Calditerrivibrio nitroreducens DSM 19672] Length = 873 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/906 (42%), Positives = 556/906 (61%), Gaps = 45/906 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL++F+K+GH+++ SSSL+P NDPTL+FTN+GM FK++F G EK Y Sbjct: 1 MISGKDIREKFLKYFEKHGHKIVDSSSLVPQNDPTLLFTNAGMNQFKDLFLGLEKREYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QK VRAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LTKE L Sbjct: 61 ATTCQKVVRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEYAWEFLTKELGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++++Y +DEEAF++W K+ G+ A+KI+R DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PEEKLFVSIYYDDEEAFEIWNKVIGIPAEKILRRGEKDNFWSMGDTGPCGPCSEIHIDQG 180 Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 P + + +R++E+WNLVFMQ+++ + LPK SIDTGMGLER+ V Q Sbjct: 181 PEAGCRKPDCNPDCDCDRHLELWNLVFMQYDRSADGKLTPLPKPSIDTGMGLERITAVCQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANE 295 K +NYD DL K +I+ + ++ G Y GNN V+ RVI DH RS++FLIADG++P+NE Sbjct: 241 GKLSNYDTDLIKPIIEFTAKLAGKNY-GNNEKDDVSLRVIADHSRSTTFLIADGVIPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRIMRRAM + ++LG+ + + MG Y EL K I + + E+ Sbjct: 300 GRGYVLRRIMRRAMRHGKMLGFDGTFFYKVCEFVVDFMGDHYIELKDKKDYISKMVAFEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 +RF +TLD GL L+D +L + ++G FKLYDT+G P+D++QDI G +D+ Sbjct: 360 KRFSRTLDLGLKLIDELLEKNKDRKEISGSEIFKLYDTYGFPIDLLQDIAEDNGYK-LDL 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + F++ + Q+ RA+ H +G G +++ L + T+F GYD Sbjct: 419 MGFDKEMALQQERAKKHWVGSGEEKIAEVYKKL--SHLKTEFQGYD-------------- 462 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + +SS + A+++ GE +E G++V+++ +QTPFY E GGQ GDTG Sbjct: 463 ---------NHSLSSKILALIENGEEKQEVQEGKEVDILLEQTPFYPEGGGQQGDTGTIY 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 ++ D KK + VH AIV++G L+ ++ ID R NH++THLLH Sbjct: 514 SREAIAEVKDT-KKYGNLIVHKAIVKKGTLKVGENVTAEIDSVKRIATERNHTSTHLLHK 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + + LRFD +H + I+ ++ IE VN II +NL V +M Sbjct: 573 ALQMVLGDHVRQAGSLVNDEKLRFDFSHFEAISKDDIIEIERIVNSIIIKNLSVTKTLMP 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A+ SGA AL G KY+ VRVV V S LCGG HV +TGEI I+ E S Sbjct: 633 IEEAVKSGAMALFGEKYDRIVRVVEV-----SDFSKELCGGCHVRNTGEIGFFRIIGEMS 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--- 772 + AG+RRIEA+TG +A + L + +KVSQ +V RV+++ EE + ++ Sbjct: 688 VAAGVRRIEAVTGMKAFDEYVKMKNILDDIMLTIKVSQDQIVSRVKDLLEENKAIKKDLD 747 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 R+L +EDL + I V +S IS D +++ + D ++ KI+SGI+++ I Sbjct: 748 DQKSRELMKMMEDLDRYTYDINGVKLISIKISYPDINKVRELADNIKDKIKSGIVLIAAI 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + K ++L +T DL DRF+A + + K+ GGGGGGR AQ+GG + +K D+A+ Sbjct: 808 NND-KLTILCGITRDLTDRFSADKIVKEITKIT-GGGGGGRSDFAQAGGKDISKLDEALT 865 Query: 891 GVASFL 896 + SFL Sbjct: 866 KIKSFL 871 >gi|325271425|ref|ZP_08137952.1| alanyl-tRNA synthetase [Pseudomonas sp. TJI-51] gi|324103458|gb|EGC00778.1| alanyl-tRNA synthetase [Pseudomonas sp. TJI-51] Length = 874 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/891 (43%), Positives = 534/891 (59%), Gaps = 57/891 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 4 AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEKWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L+ A+ + G +G + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGEAFPELTSQQAHIERVLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L + ++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-QGAVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + AT+F+GY Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 D T G I+ A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GD+G Sbjct: 460 ---------DATEGQGKII-ALYKDGQSVDQLGVGEQGVVVLDRTPFYAESGGQVGDSGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K G F+HH +V G L + +D + S+NHSATHLL Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVVTSGALLIGAPVEAKVDADVQHATSLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + + +LK +ED VN + +N PV T + Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAVKPEQLKQLEDIVNREVRKNTPVETEL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRV+++ GG S LCGG H TG+I L I+SE Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLTM----GGDFSVELCGGIHAKRTGDISLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L Q Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744 Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L + K +DLS ++ ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853 >gi|205830055|sp|Q0VNK2|SYA_ALCBS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 863 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/901 (43%), Positives = 548/901 (60%), Gaps = 48/901 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL++F GH + SSSL+P NDPTL+FTN+GM FK++F G+E Y T+ Sbjct: 4 AELRQAFLDYFASQGHTKVSSSSLVPANDPTLLFTNAGMNQFKDVFLGRESRDYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT L + R Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLPEER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA +W K G+SA++ R+ DNFW M +TGPCGP SEIF+D G +P Sbjct: 124 LWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGADVP 182 Query: 185 GGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS++E +RYIEIWNLVFMQ+++Q E LPK S+DTGMGLER+A VLQ +N Sbjct: 183 GGPPGSADEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGVHSN 242 Query: 244 YDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 Y+IDLF+ L+QA+ + TG E ++ RVI DH+RS+SFLI DG++P+NEGRGYVLR Sbjct: 243 YEIDLFQALLQAAAKATGCTDLEEKSL---RVIADHIRSASFLICDGVIPSNEGRGYVLR 299 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + LG +P L+ AL EMG AYPEL + + IE+ L +E+E+FG+TL Sbjct: 300 RIIRRALRHGHKLGQDKPFFSTLVAALVAEMGEAYPELGREQARIEKALLAEEEQFGRTL 359 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 G+ +L+ + L +L GDV F LYDTHG P D+ D+ R L+ +D+ F A+ Sbjct: 360 AAGMKVLESAIEQL-DGRVLPGDVLFNLYDTHGFPPDLTADVARERDLS-VDMDGFEAAM 417 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 QR RAR G+G+ + T F GY+ L +D V+ Sbjct: 418 AAQRERAR------GAGSFANDYSDRLNIDAITDFSGYEKL------ADDNTVV------ 459 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 A+ + G V+ +G++ VV D+TPFYAE+GGQ+GDTG I D R Sbjct: 460 -----------ALYKDGAAVDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALIADEARFM 508 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 +TD +K+ + VH G L + +D R + NHSATHL+H AL +LG Sbjct: 509 VTDTRKR-QAAHVHVGKQVSGSLTIGGKVSACVDVDRRLAVMRNHSATHLMHAALRNVLG 567 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS ++ D LRFD +H + ++ A+ + IE VN I N V T +M+ E A + Sbjct: 568 EHVQQKGSLVSADYLRFDFSHGEAVSEAQREEIEILVNRQILANTAVTTELMDIESAREA 627 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY+D+VRV+S+ DG S LCGGTHV+ TG+I L I E+S AG+RR Sbjct: 628 GAMALFGEKYDDQVRVLSMG-SDG--FSKELCGGTHVNRTGDIGLFRITLEASAAAGVRR 684 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQ 780 IEA+TG+ A + + Q+ L +A+ +K S N RV ++ R+L ++ K+KL Sbjct: 685 IEAVTGEHALAVMRRQERALSEIAATVKSSLDNAADRVRSQAQKVRELEKEIERLKQKLA 744 Query: 781 LNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 ++ D+N + + +++ D K L+ MD L+ K+ S +I+L + EK A Sbjct: 745 SGAGGDLTSEVQDINGVKVLATQIDGADGKTLRVTMDKLKDKLGSAVIVLAAVEGEKVA- 803 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 ++ VT+DL ++ A DL + A+ + G GGGRP MAQ GG N A+ V +++ Sbjct: 804 LVAGVTKDLTTKYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVKAWVA 862 Query: 898 K 898 + Sbjct: 863 E 863 >gi|114330803|ref|YP_747025.1| alanyl-tRNA synthetase [Nitrosomonas eutropha C91] gi|122314262|sp|Q0AHX2|SYA_NITEC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114307817|gb|ABI59060.1| alanyl-tRNA synthetase [Nitrosomonas eutropha C91] Length = 863 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/900 (41%), Positives = 549/900 (61%), Gaps = 48/900 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FF+ +GH ++PSS L+P NDPTL+FTN+GMV FK++F GQ+K Y + Sbjct: 4 SEIRQKFLDFFETHGHVVVPSSPLVPGNDPTLLFTNAGMVQFKDVFLGQDKRPYVRAVSA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT ++ + + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRNAILFAWEFLTGPLNIPKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+ TVY ED+EA +W ++ +++RI T+DNFW M ETGPCGPCSEIF+D G + Sbjct: 124 LWATVYAEDDEAADIWLNEVKIAPSRLVRIATSDNFWQMGETGPCGPCSEIFYDHGPEVA 183 Query: 185 GGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS + +G+RY+EIWNLVFMQ+ + E LPK S+DTGMGLER+A V+Q+ +N Sbjct: 184 GGPPGSEDADGDRYVEIWNLVFMQYNRDTSGELHPLPKPSVDTGMGLERIAAVMQQVHSN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y+IDLF+ LI+A+ +VTG + NN + +VI DH+R+ +FLI DG++P NEGRGYVLRR Sbjct: 244 YEIDLFRCLIEAAARVTGEQDLSNNSL--KVIADHIRACAFLITDGVIPGNEGRGYVLRR 301 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG + L+ L MG AYPEL+ AK + +R E+ERF +TL+ Sbjct: 302 ILRRAIRHGYRLGQKQSFFHLLVDDLVDVMGQAYPELMAAKKHVIAVIRQEEERFAETLE 361 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ +L+ L+ + +L GDV F+LYDT G P+D+ DI RG GID+ F + Sbjct: 362 NGMGVLEAALAR--ESNMLPGDVVFRLYDTFGFPVDLTADIARERG-GGIDLAGFEMCMA 418 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 +QR RARA E + T+F GY+ L + + +L Sbjct: 419 QQRDRARASGKFTMQAGLEYVGLP-------TEFHGYETL------QHEAHILV------ 459 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + ++G V+ +G + VV DQTPFYAE+GGQ GD+G + + Sbjct: 460 -----------LYKEGSHVDFIEAGDEAVVVLDQTPFYAESGGQAGDSGELLSGSGTFTV 508 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D QK +F H ++ G L T ++ ++ R + NHSATHLLH AL ILG+ Sbjct: 509 KDTQKIQAKVFGHAGMLSSGRLVTGDRVIARVNPIARINTAYNHSATHLLHAALRQILGN 568 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV+Q GS + D LRFD +H+ + + E++ +E+ VN I +N V T++M ++A+ G Sbjct: 569 HVTQKGSLVDADRLRFDFSHNSAMQANEIRQVENLVNAQIRKNHEVATQLMAYDEAVKQG 628 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY+D VRVVS+ G S+ LCGGTHV +G+I IV+ES + AGIRRI Sbjct: 629 AMALFGEKYSDTVRVVSM-----GDFSTELCGGTHVQHSGDIGFFRIVAESGVAAGIRRI 683 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRKLQLN 782 EA+TG+ A ++ Q+++L+ ++ LK + ++ ++ + R+++ I R Sbjct: 684 EALTGEAALAYTQQQEQQLQQVSDVLKAAPHEAALKLSQVLDHVRQVEKEITVLRSKLAG 743 Query: 783 VEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 ++ S +I + ++ + V+ + L+ +D + +++S +++L G ++ K + Sbjct: 744 MQSSSLIEQAQEIKGIRVLAAALENVNVRTLRETLDNFKSRLKSCVVVL-GTIEDDKVML 802 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + VT DL + A DL A+ + GG GGGR MAQ+GG +K QA+ VA ++++ Sbjct: 803 IAGVTNDLTAKLKAGDLINFVAQQV-GGKGGGRADMAQAGGTLPDKLPQALTSVAGWVER 861 >gi|319794254|ref|YP_004155894.1| alanyL-tRNA synthetase [Variovorax paradoxus EPS] gi|315596717|gb|ADU37783.1| alanyl-tRNA synthetase [Variovorax paradoxus EPS] Length = 874 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/872 (42%), Positives = 522/872 (59%), Gaps = 55/872 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR TFL+FF GH ++PSSSL+P NDPTLMFTNSGMV FK++F G++K Y Sbjct: 7 TVADIRKTFLDFFASKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGEDKRNYVRAA 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK ++ A++LLTK + L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLTWAFELLTKVYKLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY ED+EA+ +W K GL ++++RI N DNFW MA+TGPCGPCSEI Sbjct: 127 EKLWATVYIEDDEAYDIWTKEIGLPPERVVRIGDNKGGRYMSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 FFD E G E+G+RYIEIWN VFMQF+ Q LP +DTGMGLER+A Sbjct: 187 FFDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFDMQPDGSVKKLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+ID+F LI+A+ + TG K GNN + RVI DH+R++SFL++DG++P+N Sbjct: 247 AILQHVHSNYEIDIFDALIKAAARETGEKDLGNNSL--RVIADHIRATSFLVSDGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG +P L+P L MG AYP+L+ + I +TL++E Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKKPFFHKLVPDLVKLMGDAYPKLVADEKRITDTLKAE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G + L GDVAFKL+DT+G PLD+ D+ RG++ +D Sbjct: 365 EERFFETLANGMEILDAALA--GGAKTLPGDVAFKLHDTYGFPLDLSADVCRERGVS-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A+E+Q++ RA G K+ +++ F GY+ L +E K Sbjct: 422 EAGFNVAMEKQKAAGRA-------GGKFKMDRNVEYTGAGNTFTGYEHL------EESAK 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V+ A+ +G V E GQ VV D TPFY+E+GGQ+GD G Sbjct: 469 VV-----------------ALYFEGAAVNELKEGQPGIVVLDTTPFYSESGGQVGDQGVL 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +G++ + D QK +F HH +G L+ ++ +D R NHS THL+H Sbjct: 512 SAEGVQFGVEDTQKIKADVFGHHGTQTQGTLKVGDAVKAAVDGARRNATMRNHSVTHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + D RFD H+ P+T ++ IE VN I N+ R+M Sbjct: 572 KALREVLGDHVQQKGSLVDADKTRFDFAHNAPVTRDQILEIEKRVNAEILSNVATQARVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV TG+I L IVSE Sbjct: 632 DMESAQKTGAMMLFGEKYGETVRVLDIG------SSRELCGGTHVGRTGDIGLFKIVSEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+TG A ++L + ++S+A+ LK + GR+ ++ E+ R L ++ Sbjct: 686 GVAAGVRRIEAVTGANALTYLQDLESTVQSVAATLKSPAAELQGRLSQVLEQVRALEREV 745 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + D+N + + +++ D+K L+ MD L+ K+++ II+L Sbjct: 746 GSLKGKLASSKGDELIAQAVDINGIKVLAAKLDGADAKTLRDTMDKLKDKLKTAIIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 + + K + VT D + + A +L A+ Sbjct: 806 VDGD-KVQIAAGVTADTVGKAKAGELVNFVAQ 836 >gi|89092119|ref|ZP_01165074.1| alanyl-tRNA synthetase [Oceanospirillum sp. MED92] gi|89083854|gb|EAR63071.1| alanyl-tRNA synthetase [Oceanospirillum sp. MED92] Length = 854 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/896 (42%), Positives = 531/896 (59%), Gaps = 54/896 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FLEFF++ GHE++ SSSLIP NDPTLMFTN+GMV FK++F G +K Y T+ Sbjct: 7 AEIRQAFLEFFKQQGHEIVASSSLIPANDPTLMFTNAGMVQFKDVFLGTDKRNYTRATSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW LT+ L + R Sbjct: 67 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAINFAWTFLTETLGLPKER 126 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA ++WK+ G+ ++ ++ DNFWSM +TGPCGPC+EIFFD G + Sbjct: 127 LWVTVHHSDDEAERIWKEEIGVDPERFSKL-DEDNFWSMGDTGPCGPCTEIFFDHGADVW 185 Query: 185 GGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS EE G+RYIEIWN+VFMQ+ + E LPK S+DTGMGLER+A V+Q +N Sbjct: 186 GGPPGSPEEDGDRYIEIWNVVFMQYNRSADGEMTPLPKPSVDTGMGLERIAAVMQNVHSN 245 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y+ID+F++L++A+ G N + RVI DH+RS SFLI DG+LP+NEG GYVLRR Sbjct: 246 YEIDMFQNLLKATAAAVGTTDMDNKSL--RVIADHIRSCSFLIVDGVLPSNEGAGYVLRR 303 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LG P L+ AL EMG AYPEL + + +E L E+E+F KTLD Sbjct: 304 IIRRAVRHGNKLGAKGPFFNQLVEALVKEMGEAYPELAEKQSQVERVLLKEEEQFAKTLD 363 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ LL + L ++ G+ FKLYDT+G P D+ D+ L ID F + +E Sbjct: 364 HGMRLLHEAIEGL-DGTVIPGETVFKLYDTYGFPHDLTADVAREHELT-IDEEGFEREME 421 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR RARA +G + + G T F GY+LL Sbjct: 422 AQRERARA------AGKFSVDYNDAIKLEGETSFTGYELLESD----------------- 458 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 +S V A+ ++GE V+ +G+ VV D+TPFYAE+GGQ+GDTG + Sbjct: 459 -----ASTVVALFKEGEAVDTLQTGETGLVVLDETPFYAESGGQVGDTGALNASASVFAV 513 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 T+ K+ + +HH VE+G L + +D R+ +++NHSATHLLH AL +LG Sbjct: 514 TNCTKEGKN-NLHHGSVEQGSLSVGDKVAPQVDAVRRKAIALNHSATHLLHEALRVVLGE 572 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS LRFD +H + +T ++ +E VN I N VVT IM E A A G Sbjct: 573 HVQQKGSLNDDQRLRFDFSHFEAVTPEQIAEVEALVNQQIRDNSEVVTEIMEIEAAKAKG 632 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 AAAL G KY+D VRV+++ GG S LCGGTH TG+I LL I SE + AGIRR+ Sbjct: 633 AAALFGEKYDDVVRVLTM----GGDFSVELCGGTHAKRTGDIGLLKITSEGGVAAGIRRV 688 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR-VEEIWEEYRKLQLIHAKRKLQLN 782 EA+TG A + Q + ++ K+ + R +E+ E+ + L N Sbjct: 689 EAVTGAVALDYFADQKGQFEA-----KLQEQQAKTRQLEKELEQMKAKLAAAKGADLVSN 743 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 D+ K+ ++ + V+ K L+ +D L+ K+ SG+++L + K ++ V Sbjct: 744 AVDVKGVKV-----LAAKLEGVEPKALRDTIDQLKNKLGSGVVVLA-TESDGKIALAAGV 797 Query: 843 TEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 T++L + A DL + L+AK+ GG GGGRP AQ GG + + A+ VA ++ Sbjct: 798 TKELTSKVRAGDLIKELTAKL--GGKGGGRPDFAQGGGTDLQALEGALDSVAGLVE 851 >gi|114320637|ref|YP_742320.1| alanyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1] gi|122311690|sp|Q0A8K7|SYA_ALHEH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114227031|gb|ABI56830.1| alanyl-tRNA synthetase [Alkalilimnicola ehrlichii MLHE-1] Length = 869 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/904 (42%), Positives = 535/904 (59%), Gaps = 48/904 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + IR FLEFF+ GH ++PSS L+P NDPTL+FTN+GMVPFK++F G+E+ Y Sbjct: 1 MKSSAEIRNAFLEFFEHRGHTVVPSSPLVPANDPTLLFTNAGMVPFKDVFLGKEQRGYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT+ L Sbjct: 61 ACSSQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAIEYAWEFLTRTIGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ- 179 RL++TVY+ED+EA +W G+ ++ RI DNFWSM +TGPCGPCSEIF+D Sbjct: 121 PAERLWVTVYEEDDEAADIWLNEIGVDPERFGRIGAADNFWSMGDTGPCGPCSEIFYDHG 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E G E+G+RY+EIWNLVFMQ+++ + LP +DTGMGLER+A V+Q Sbjct: 181 PEVPGGPPGSPEEDGDRYVEIWNLVFMQYDRDAEGRLAPLPMPCVDTGMGLERLAAVVQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +N++IDLF+ LI A+ + G+ + +N + +VI DH+R+ +FLI DG++PAN+GRGY Sbjct: 241 VHSNFEIDLFRRLIGAAAALAGLPEDSDN-ASLKVIADHIRACAFLITDGVVPANDGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG EP L+ L EMG A+PEL + + L+E L E++RF Sbjct: 300 VLRRIIRRAVRHGYKLGIDEPFFHRLVQPLADEMGGAFPELPERQALVERLLLQEEQRFR 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL++GL LL+ L L EI G+ FKL DT+G P+D+ DI R L +D+ F Sbjct: 360 ETLEQGLKLLEEDLRQLTGAEI-PGETVFKLADTYGFPVDLTADIARERDLT-LDMAGFE 417 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQ 478 + QR RARAHS K+ E++ G + FIGYD L G Sbjct: 418 ACMAAQRERARAHS-------QFKVQHGEGEQFEGESHFIGYDQLEG------------- 457 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGD 537 V A+ + G V+ +G++ V+ DQTPFYAE+GGQ+GD G Sbjct: 458 ----------HGEVLALFRDGRSVQTLSAGEEGMVILDQTPFYAESGGQVGDQGVLETAG 507 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G ++ D K+ EG H + G + L +D + R ++NHSATHLLH AL Sbjct: 508 GEVFEVRDTLKQGEG-HGHLGRLREGRIHVGDRLRAQVDAETRWATALNHSATHLLHAAL 566 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG+HV Q GS + PD LRFD H + ++ +L+ IE VND I N M + Sbjct: 567 RGVLGTHVQQKGSLVAPDRLRFDFAHYEAPSTEQLEQIERIVNDEIRANRAADIEHMAYD 626 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DAI +GA AL G KY D+VRV+ G S LCGGTHV TG+I L ++SE + Sbjct: 627 DAIETGAMALFGEKYGDQVRVLRF-----GEFSIELCGGTHVERTGDIGLCKLISEGGVA 681 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHA 775 G+RRIEA+TG RA + +++L +A +K S N RV ++ + + + +L Sbjct: 682 GGVRRIEAVTGDRAVMWVQRTEQRLVQVAETVKASPDNAAVRVAQLVDRLKGQEKELERL 741 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDS--KELKSVMDALQKKIQSGIIMLVGISKE 833 K+KL + D+ + + + VD+ K L+ +D L+ K+ + +I+L ++ + Sbjct: 742 KQKLASQAGSDLAGQAVDIGGVKVVAARVDADNKALRDTVDQLRNKLGTAVIVLGAVAGD 801 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K ++ V++D DR A DL R A+ + GG GGGRP AQ+GG + A+A V Sbjct: 802 -KVRLVAGVSKDCTDRIKAGDLVRQVAEQV-GGKGGGRPDFAQAGGEQPEHLETALASVE 859 Query: 894 SFLK 897 S ++ Sbjct: 860 SLVR 863 >gi|167034974|ref|YP_001670205.1| alanyl-tRNA synthetase [Pseudomonas putida GB-1] gi|166861462|gb|ABY99869.1| alanyl-tRNA synthetase [Pseudomonas putida GB-1] Length = 897 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/891 (43%), Positives = 533/891 (59%), Gaps = 57/891 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 27 AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 86 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 87 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 146 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 147 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 206 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 207 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 266 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L+ A+ + G +G + +V+ DH+RS FLIADG+LP+N Sbjct: 267 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 324 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 325 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 384 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K +++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 385 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 442 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + AT+F+GY Sbjct: 443 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 482 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 D T I+ A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GDTG Sbjct: 483 ---------DATEAQGKII-ALYKDGQAVDQLGEGEQGVVVLDRTPFYAESGGQVGDTGF 532 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K G F+HH +V G L + +D + S+NHSATHLL Sbjct: 533 LQAGAARFDVRDTTKTG-GAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATHLL 591 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + + ++K +ED VN + +N V T + Sbjct: 592 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEALKPEQIKQLEDIVNREVRKNTAVETEL 651 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+SE Sbjct: 652 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 707 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L Q Sbjct: 708 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 767 Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L + K +DLS ++ ++ + D K L +++D L+ K+ +I+L Sbjct: 768 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 826 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 827 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 876 >gi|205830253|sp|B0KR43|SYA_PSEPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/891 (43%), Positives = 533/891 (59%), Gaps = 57/891 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + SSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 4 AEIREAFLRFFEEQGHTRVASSSLIPNNDPTLLFTNAGMNQFKDCFLGAEKRAYTRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E +L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSEQWLNLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERVS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++L+ A+ + G +G + +V+ DH+RS FLIADG+LP+N Sbjct: 244 AVLQHVHSNYEIDLFQNLLAAAAKAIGCSNDGQ--ASLKVVADHIRSCGFLIADGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + LG ++ AL EMG A+PEL + IE L++E Sbjct: 302 EGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGEAFPELKSQQAHIERVLKAE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F KTL++GL +L+ L+ L K +++ GDV FKLYDT+G P+D+ DI R L ID Sbjct: 362 EEQFAKTLEQGLRILEQDLAQL-KGDVVPGDVVFKLYDTYGFPMDLTADIARERELT-ID 419 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A + G+ + SL + AT+F+GY Sbjct: 420 EAGFEREMDAQRERARSASAFGMD-------YNSLVKVDSATEFLGY------------- 459 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 D T I+ A+ + G+ V++ G++ VV D+TPFYAE+GGQ+GDTG Sbjct: 460 ---------DATEAQGKII-ALYKDGQAVDQLGEGEQGVVVLDRTPFYAESGGQVGDTGF 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R + D K G F+HH +V G L + +D + S+NHSATHLL Sbjct: 510 LQAGAARFDVRDTTKTG-GAFLHHGVVASGALVIGSPVEAKVDADVQHATSLNHSATHLL 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + LRFD +H + + ++K +ED VN + +N V T + Sbjct: 569 HEALRQVLGEHVQQKGSLVDSQRLRFDFSHFEALKPEQIKQLEDIVNREVRKNTAVETEL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRV+S+ GG S LCGG H TG+I L I+SE Sbjct: 629 TDIETAKAKGAMALFGEKYGDTVRVLSM----GGDFSVELCGGIHAKRTGDISLFKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + +G+RRIEA+TG A ++L +E++K A +K ++ N++ ++ + E R+L Q Sbjct: 685 GGVASGVRRIEAVTGAAALAYLNAAEEQVKEAAQLVKGNRDNLIDKLSAVLERNRQLEKQ 744 Query: 772 LIHAKRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L + K +DLS ++ ++ + D K L +++D L+ K+ +I+L Sbjct: 745 LEQLQAKAASAAGDDLSNAAVEVKGAKVLAARLDGQDGKALLALVDQLKNKLGHAVILL- 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G E K ++ VT+DL + A DL + A GG GGGRP MAQ GG Sbjct: 804 GSEHEGKVVLVAGVTKDLSSQLKAGDLMK-QAAAAVGGKGGGRPDMAQGGG 853 >gi|110834659|ref|YP_693518.1| alanyl-tRNA synthetase [Alcanivorax borkumensis SK2] gi|110647770|emb|CAL17246.1| (alanyl-tRNA synthetase) [Alcanivorax borkumensis SK2] Length = 900 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/901 (43%), Positives = 548/901 (60%), Gaps = 48/901 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL++F GH + SSSL+P NDPTL+FTN+GM FK++F G+E Y T+ Sbjct: 41 AELRQAFLDYFASQGHTKVSSSSLVPANDPTLLFTNAGMNQFKDVFLGRESRDYTRATSS 100 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT L + R Sbjct: 101 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTGTLGLPEER 160 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA +W K G+SA++ R+ DNFW M +TGPCGP SEIF+D G +P Sbjct: 161 LWVTVHVSDDEAADIWLKEMGVSAERFSRL-DEDNFWQMGDTGPCGPSSEIFYDHGADVP 219 Query: 185 GGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PGS++E +RYIEIWNLVFMQ+++Q E LPK S+DTGMGLER+A VLQ +N Sbjct: 220 GGPPGSADEDLDRYIEIWNLVFMQYDRQPDGELQPLPKPSVDTGMGLERIAAVLQGVHSN 279 Query: 244 YDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 Y+IDLF+ L+QA+ + TG E ++ RVI DH+RS+SFLI DG++P+NEGRGYVLR Sbjct: 280 YEIDLFQALLQAAAKATGCTDLEEKSL---RVIADHIRSASFLICDGVIPSNEGRGYVLR 336 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + LG +P L+ AL EMG AYPEL + + IE+ L +E+E+FG+TL Sbjct: 337 RIIRRALRHGHKLGQDKPFFSTLVAALVAEMGEAYPELGREQARIEKALLAEEEQFGRTL 396 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 G+ +L+ + L +L GDV F LYDTHG P D+ D+ R L+ +D+ F A+ Sbjct: 397 AAGMKVLESAIEQL-DGRVLPGDVLFNLYDTHGFPPDLTADVARERDLS-VDMDGFEAAM 454 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 QR RAR G+G+ + T F GY+ L +D V+ Sbjct: 455 AAQRERAR------GAGSFANDYSDRLNIDAITDFSGYEKL------ADDNTVV------ 496 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 A+ + G V+ +G++ VV D+TPFYAE+GGQ+GDTG I D R Sbjct: 497 -----------ALYKDGAAVDTLNAGEEGMVVLDRTPFYAESGGQVGDTGALIADEARFM 545 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 +TD +K+ + VH G L + +D R + NHSATHL+H AL +LG Sbjct: 546 VTDTRKR-QAAHVHVGKQVSGSLTIGGKVSACVDVDRRLAVMRNHSATHLMHAALRNVLG 604 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS ++ D LRFD +H + ++ A+ + IE VN I N V T +M+ E A + Sbjct: 605 EHVQQKGSLVSADYLRFDFSHGEAVSEAQREEIEILVNRQILANTAVTTELMDIESAREA 664 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL G KY+D+VRV+S+ DG S LCGGTHV+ TG+I L I E+S AG+RR Sbjct: 665 GAMALFGEKYDDQVRVLSMG-SDG--FSKELCGGTHVNRTGDIGLFRITLEASAAAGVRR 721 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQ 780 IEA+TG+ A + + Q+ L +A+ +K S N RV ++ R+L ++ K+KL Sbjct: 722 IEAVTGEHALAVMRRQERALSEIAATVKSSLDNAADRVRSQAQKVRELEKEIERLKQKLA 781 Query: 781 LNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 ++ D+N + + +++ D K L+ MD L+ K+ S +I+L + EK A Sbjct: 782 SGAGGDLTSEVQDINGVKVLATQIDGADGKTLRVTMDKLKDKLGSAVIVLAAVEGEKVA- 840 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 ++ VT+DL ++ A DL + A+ + G GGGRP MAQ GG N A+ V +++ Sbjct: 841 LVAGVTKDLTTKYKAGDLLKFVAEQV-DGRGGGRPDMAQGGGNNPAALPGALESVKAWVA 899 Query: 898 K 898 + Sbjct: 900 E 900 >gi|296135261|ref|YP_003642503.1| alanyl-tRNA synthetase [Thiomonas intermedia K12] gi|295795383|gb|ADG30173.1| alanyl-tRNA synthetase [Thiomonas intermedia K12] Length = 917 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/953 (40%), Positives = 545/953 (57%), Gaps = 98/953 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 NVS IR FL +F+ G + SSSL+P NDPTL+FTNSGMV FK++F GQ++ Y+ T Sbjct: 2 NVSDIREKFLAYFESQGSTRVASSSLVPGNDPTLLFTNSGMVQFKDVFLGQDQRPYKRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 62 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRYAWELLTTVYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSEI Sbjct: 122 EKLWVTVYAEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNK-QERF---------------- 217 F+D G + GG PGS EE G+RYIEIWNLVFMQFE+ +ERF Sbjct: 182 FYDHGPEVWGGPPGSPEEDGDRYIEIWNLVFMQFERYAAGEERFETEDQATARKQAVEAE 241 Query: 218 ---------------------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256 LPK +DTGMGLER+A VLQ +NY+IDLF+ LI+A+ Sbjct: 242 GGIGLVSKDGEGYKLAVFRQKPLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQALIKAA 301 Query: 257 EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316 + T G+ + +VI DH+R+ +FLI DG++P NEGRGYVLRRI RRA+ + LG Sbjct: 302 ARETATADLGH--ASLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRINRRAIRHGYKLG 359 Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376 +P ++P L +MG+AYPEL +A+ + E L++E+ RF +T++ G+ +LD L+ L Sbjct: 360 VRQPFFYKMVPDLVAQMGAAYPELAEAQGRVAEVLQAEEARFFETIEHGMGVLDTELAAL 419 Query: 377 --GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434 +L G++AFKL+DT G PLD+ QD+ G+ +D +F+ A+ QR +ARA Sbjct: 420 RAAGGNLLAGELAFKLHDTFGFPLDLTQDVCREHGMK-VDEAAFDVAMARQREQARAAG- 477 Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494 K+ +L T+F GY+ L +KE R V A Sbjct: 478 ------KFKMQAALDYVGDKTRFDGYEHL----LVKEARVV------------------A 509 Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG--IRLQITDVQKKAE 551 + + G V +G VV D+TPFYAE+GGQ+GD+G GD +R + D QK Sbjct: 510 LYKDGTSVPTLQAGDPGVVVLDRTPFYAESGGQVGDSGVLFEGDSCDLRFVVHDTQKLQA 569 Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611 +F HH +E G L+ + +D + R + NHS THL+H AL +LG HV Q GS Sbjct: 570 DVFGHHGTLESGSLKVGEIVAAQVDGERRLAVMRNHSVTHLMHKALRLVLGDHVQQKGSL 629 Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671 + D RFD H P++ E+ +E VN+ I N R+M ++A GA L G K Sbjct: 630 VDADKTRFDFAHDAPMSDDEIARVERLVNEEILANAATQARVMPIDEAKGMGAMMLFGEK 689 Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 Y D VRV+ + S LCGGTHV+ TG+I L IV E + AGIRR+EA+TG A Sbjct: 690 YGDTVRVLDIGT------SRELCGGTHVARTGDIGLFKIVFEGGVAAGIRRVEAVTGLNA 743 Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCH 789 + + Q+ + L+ LK +VE++ E+ R+L+ L K + D Sbjct: 744 LAFVQKQNALVARLSRTLKAPAEESAAKVEQLLEQQRQLEKDLTQLKAQQAAAQGDALVS 803 Query: 790 KIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVLIVVTED 845 + + S +++ +D+K L+ +D ++ K+++ +++L S+E K + V+ D Sbjct: 804 QAFTIGGTSVLLARMDGLDAKGLREAVDRIKSKLKTAVVLLA--SREGDKVQLAAGVSAD 861 Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + + A DL ++A+ + GG GGGRP A +GG + D A+A S L++ Sbjct: 862 RVGQIKAGDLVSVAAQAV-GGKGGGRPDFAMAGGTQPEQIDAALAQAKSLLQQ 913 >gi|153006742|ref|YP_001381067.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5] gi|205829977|sp|A7HH87|SYA_ANADF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|152030315|gb|ABS28083.1| alanyl-tRNA synthetase [Anaeromyxobacter sp. Fw109-5] Length = 904 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/930 (41%), Positives = 540/930 (58%), Gaps = 73/930 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL FF++ H +PSSSL+P NDPTL+FTN+GM FK++FTG+EK Y Sbjct: 1 MKTAAQIRELFLRFFEEKAHRRVPSSSLVPQNDPTLLFTNAGMNQFKDVFTGREKRDYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--F 118 TT QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+L+T E Sbjct: 61 ATTAQKCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKKEAIAWAWELVTSERWL 120 Query: 119 DLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + + RL TV+ DEEA++LW + G+ ++I ++ DNFW+M +TGPCGPC Sbjct: 121 AISKERLAATVFAGEGTLPWDEEAYRLW-EAQGVPPERIHKLGAKDNFWAMGDTGPCGPC 179 Query: 173 SEIFFDQGECIPGG-------LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 SE+ F QG IP G + + +R++EIWNLVFMQFE+ LPK SID Sbjct: 180 SELHFFQGNDIPCAEEKAGRTCQGVACDCDRWLEIWNLVFMQFERGADGGLTPLPKPSID 239 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSS 282 TG GLERMA V+Q K +NYDID F+ +I+A E++ G +Y + ++ V+ RVI DH R++ Sbjct: 240 TGAGLERMAAVVQGKRSNYDIDAFQSIIRAIEKLAGKRYGATDADDDVSMRVIADHARAT 299 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 +FL+ DG+LPANEGRGYVLRRIMRRA+ + + LG P + + A+ EMG AYPE + Sbjct: 300 TFLVGDGVLPANEGRGYVLRRIMRRAIRHGKRLGLERPFLADVCEAVMEEMGGAYPETRE 359 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVL-------SHLGKD---------EILNGDV 386 + I + E+E F +TLD+GL +L+ + +HLGK +++G + Sbjct: 360 NRAFIVKVAGQEEESFRRTLDKGLAILETEMRKAIPPETHLGKPATPPPSAPRPVIDGKL 419 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT G PLD+ + I RG +D F++ + EQ RAR+ G G + Sbjct: 420 AFQLYDTFGFPLDLTRVIAAERGF-DVDEQGFDRNMAEQ--RARSEWKGSGEQAVGDLHK 476 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 + + G T+F+GY+ + VKA++ G +A Sbjct: 477 QIASELGETRFLGYE-----------------------APTARAEVKALLANGARAAKAA 513 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 G KVEVV TPFY E+GGQ+GD G G R+++ D ++ G+ H +VE G L Sbjct: 514 RGDKVEVVTAATPFYGESGGQVGDQGSIAAPGGRVRVEDTRRPVPGLVTHVGVVEEGELA 573 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 + L +D + R + NHSATHLL AL LG HV Q GS + PD LRFD +H +P Sbjct: 574 VGDLVELAVDDRRRDLIRANHSATHLLQLALRETLGDHVKQAGSIVAPDYLRFDFSHFQP 633 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 ++ EL +IE VN+++ +N T ++ EDA SGA + G KY D VRVV + Sbjct: 634 LSEEELNAIERRVNELVRENAETETAVLKLEDARQSGAMMIFGEKYGDVVRVVRLG---- 689 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 S LCGGTHV TG+I I SE SI AG+RRI A TG +A + ++L+ A Sbjct: 690 --PSKELCGGTHVRRTGDIAFFKIGSEESIAAGVRRIVAYTGPQAIELSQREADELRRAA 747 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804 + K V ++E+ + + L+ L AK K+ + DV + V Sbjct: 748 ALFKAGAFEVAQKIEQTQKRVKDLERALDEAKGKIASAQSGDLAAQARDVKGAKVLAVRV 807 Query: 805 --DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862 D K L+ + D L+ ++ +G++ L G ++ KA +L+ VT+DL R A +L + +AK+ Sbjct: 808 QGDGKSLRELADKLRDRLGTGVVAL-GAEQDGKAILLVAVTKDLTARLKAGELVKEAAKL 866 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + GG GGG+P +AQ+GG + ++A+A V Sbjct: 867 V-GGSGGGKPDLAQAGGSDPAGLEKALAKV 895 >gi|83305847|sp|Q3YSV8|SYA_EHRCJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 887 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/900 (41%), Positives = 535/900 (59%), Gaps = 65/900 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V IR F++FF KNGH+L PSS LI +DP+L+FTN+GMV FK++FT + Sbjct: 7 VGDIRKLFVDFFIKNGHQLFPSSPLIVKDDPSLLFTNAGMVQFKHVFTDASNANVGTAVS 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE A++LAW +TKE L++ Sbjct: 67 SQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKEFAVELAWSFVTKELALNKD 126 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY TVY ED+E F LWKKISG S ++II+I TNDNFWSM TGPCGPCSEIF+D GE I Sbjct: 127 KLYFTVYHEDQETFDLWKKISGFSENRIIKIKTNDNFWSMGSTGPCGPCSEIFYDYGEDI 186 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GGLPG+ EE G R+ EIWNLVFMQ+ +++ E LPK IDTGMGLER++ V+Q + Sbjct: 187 EGGLPGTPEEDGARFTEIWNLVFMQYNRKSDGELCALPKKCIDTGMGLERISAVMQGVHD 246 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYDI+LFK LI+ S++ +G NN + HRVI DH+RS++FLIA+G+ P NEGR Y+LR Sbjct: 247 NYDINLFKDLIKVSKKQSG---NTNNELAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357 RI+RRA Y +L Y LM + P+L E M YPELI AK LI L+ E+E Sbjct: 304 RIIRRAARYVYMLKYDGALMYQIFPSLIDEKSYAYMADYYPELINAKDLIISILKIEEEN 363 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TL + L LL+ L L +L GD+AFKLYDT+G P+DI DI+ +G+ D Sbjct: 364 FKDTLVKALPLLEKELVGLSSGGVLPGDIAFKLYDTYGFPVDITLDIIKEKGIK-FDEQG 422 Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F +++Q+ R++ HS+ K+W +KE YG T+F+GY+ Sbjct: 423 FYDQMDKQKERSKLNHSIKSVQQLKGKLWVDIKEHYGGTKFVGYEQYSTR---------- 472 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533 + ++ I + + E A G +V V+ D TPFYAE+GGQ GDTG Sbjct: 473 ------------AKVLSIIYEGDKSTEVANVGDRVNVLLDITPFYAESGGQKGDTGVFNV 520 Query: 534 AIGDGIRL-------QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 + G L ++ D +K + +++H +++ G L + ++ + R+ L N Sbjct: 521 IVRQGKELLSCDDVVEVLDTKKVLDTLYIHECVIKTGSLIVGDIICAEVNCEKRKNLCAN 580 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH+ L +++ + Q GS ++ D LRFD ++ +T +L IED + +I N Sbjct: 581 HSATHLLHYVLKSVIDRSIIQKGSLVSDDKLRFDFSYGVALTKEQLTLIEDKMFSLIRNN 640 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 PVVT I + ++AIA GA AL KY D VRV+++ S LC GTHV TGEI Sbjct: 641 SPVVTHICDLKEAIADGAVALFTEKYEDHGVRVINIG------DSKELCCGTHVRYTGEI 694 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 IVSE+S+ G+RRIEA+TGQ A + Q++ L +A +K N++ +++++ Sbjct: 695 GCFKIVSEASVACGVRRIEAVTGQHAIDYFREQEKMLHLIAESVKSPIDNILIQIDKLNR 754 Query: 766 EYRKLQLIHAKRKLQ------LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++L K+KL +N++ ++ KI ++F+ S ++S + V + + Sbjct: 755 NNQEL-----KQKLSDAYFSVINLQGIATDKIGSIDFL---YSSLNSVPIDVVRKFINEH 806 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + + +IM + +I V +L + A D + +V+ GGG +AQ G Sbjct: 807 LVNDMIMFFSNVVGRNVMYVIGVASNLHSKIKATDFVEIIGEVIKSKGGGNN-QLAQISG 865 >gi|260222905|emb|CBA32940.1| Alanyl-tRNA synthetase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 878 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/916 (40%), Positives = 528/916 (57%), Gaps = 65/916 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR +FL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 2 SVADIRKSFLDFFASKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRNYVRAA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ ++ AW+LLT + L Sbjct: 62 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESLNWAWELLTTVYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKI---SGLSAD------KIIRITTN-------DNFWSMAET 166 +LY TVY ED+EA+ +W+ I +G + + +IIRI N DNFW MA+T Sbjct: 122 EKLYATVYQEDDEAYAIWEDIFVKAGWTPERVKQEGRIIRIGDNKGGRYKSDNFWMMADT 181 Query: 167 GPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 GPCGPCSEIF+D G IPGG PGS E+G+R+IEIWN VFMQF LP +D Sbjct: 182 GPCGPCSEIFYDHGAHIPGGPPGSPDEDGDRFIEIWNNVFMQFNMDETGAVTPLPAPCVD 241 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285 TGMGLER+A +LQ +NY+IDLF LI+A+ + TG N + RVI DH+R+++FL Sbjct: 242 TGMGLERLAAILQHVHSNYEIDLFDALIKAASRETGCSDLTNKSL--RVIADHIRATAFL 299 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ++DG++P+NEGRGYV RRI+RRA+ + LG P L+ L MG+AYP + + Sbjct: 300 VSDGVIPSNEGRGYVQRRIVRRAIRHGYKLGQKTPFFHKLVKDLVQVMGAAYPNMASQEA 359 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 I E LR E+ERF +TL G+ +LD L+ G ++L G+VAFKL+DT+G PLD+ D+ Sbjct: 360 RITEVLRVEEERFFETLATGMQILDEALA--GGVKVLPGEVAFKLHDTYGFPLDLSADV- 416 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 C +D F A+E Q+++ RA G +K +L+ F+GY+ L Sbjct: 417 CRENGVEVDSAGFTAAMEAQKAKGRA----AGKFKMDK---ALEYTGAGNTFVGYEHLT- 468 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S+ + A+ G V E +GQ +V D TPFYAE+G Sbjct: 469 ----------------------QSAKIVALYADGTAVSELKAGQDGVLVLDTTPFYAESG 506 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G D ++ D QK +F HH ++ G+LR ++ +D R Sbjct: 507 GQVGDEGAVFSDAGLFEVGDTQKIKADVFGHHGTLKTGVLRVGDAVTAHVDAAKRAATVR 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHL+H AL +LG HV Q GS + + RFD H+ P+T+ +++ IE VN + Sbjct: 567 NHSATHLMHKALREVLGEHVQQKGSLVNAERTRFDFAHNAPVTAEQIRQIEAKVNAEVLA 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N R+M+ E A +GA L G KY + VRV+ + S LCGGTHV +TG+I Sbjct: 627 NAAAQARVMDIESAQKTGAMMLFGEKYGETVRVLDIG------SSRELCGGTHVHATGDI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L +V E + AG+RRIEA+TG A +L ++ + + A+ LK + R+ +I + Sbjct: 681 GLFKVVGEGGVAAGVRRIEAVTGANALHYLQDLEDTVGAAAATLKTPVAELGNRLGQIVD 740 Query: 766 EYRKL--QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKI 820 + + L ++ K KL D DVN ++ + D+K L+ MD L+ K+ Sbjct: 741 QVKALEKEVAALKGKLASAQGDELVSSAVDVNGVKVLAAKLEGADAKTLRDTMDKLKDKL 800 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 ++ +I+L + + K + VT D + A +LA A + GG GGG+ MA +GG Sbjct: 801 KTAVIVLGAVDGD-KVQIAAGVTNDTTAKVKAGELANFVASQV-GGKGGGKADMAMAGGT 858 Query: 881 NGNKADQAIAGVASFL 896 K A+A V +++ Sbjct: 859 EPAKLAGALASVQAWV 874 >gi|313902388|ref|ZP_07835791.1| alanyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965] gi|313467319|gb|EFR62830.1| alanyl-tRNA synthetase [Thermaerobacter subterraneus DSM 13965] Length = 905 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/899 (42%), Positives = 553/899 (61%), Gaps = 45/899 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL FF+++GH ++PSSSL+P +DPTL+FTN+GMV FK++FTG+EK Y+ TT Sbjct: 18 AAEIRERFLRFFERHGHTIVPSSSLVPKDDPTLLFTNAGMVQFKDVFTGKEKVPYKRATT 77 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+RAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK AI AW LT+E L + Sbjct: 78 AQKCMRAGGKHNDLENVGKTARHHTFFEMLGNFSFGDYFKREAIHFAWTFLTEELGLPRE 137 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181 RL+ T++ +D+EAF LW++++G+ A++I+R+ DNFW+M +TGPCGPCSEI +D+GE Sbjct: 138 RLWATIFRDDDEAFGLWQEVTGIPAERIVRLGEKDNFWAMGDTGPCGPCSEIVYDRGEEF 197 Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 C + + +R++EIWNLVFMQF + LP+ SIDTGMGLER+A+V+Q Sbjct: 198 RCDAEVCGIGACDCDRWLEIWNLVFMQFNRDESGRLEPLPRPSIDTGMGLERIASVMQGV 257 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +N+D DLF+ L++A E +TG Y+G RVI DH R+ +FLIADG+LP+NEGRG+ Sbjct: 258 GSNFDTDLFRPLLRAVEDLTGRPYDGGEAGFPFRVIADHARACTFLIADGVLPSNEGRGH 317 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + R+LG EP + L+ + MG AYPE+ Q + +R E+ERF Sbjct: 318 VLRRILRRAVRFGRILGLEEPFLYRLVDTVGEVMGDAYPEVRQRADYVRRVIRGEEERFF 377 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TLD+G+ +L V+ + D +++G+ AF LYDT+G PLD+ +D GL +D Sbjct: 378 RTLDQGMAILAEVIERARQRGDGLIHGEEAFVLYDTYGFPLDLTEDAAEEAGLR-VDREG 436 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F +A+ QR RAR A + G + +L ++ AT+F GY+ L ED Sbjct: 437 FERAMAVQRQRARAAREVEEGWDPGSPLARALADEP-ATEFTGYERL-------ED---- 484 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V+ +V++ E + A +G++V V+ D+TPFYAE GGQ+GDTG Sbjct: 485 ------------EGTVRLLVRRDEPADRADAGEEVGVILDRTPFYAERGGQVGDTGWLET 532 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 RL++ D Q G +H A V G ++ + +D R + NH+ATHLLH A Sbjct: 533 PRARLEVLDTQPLPGGRILHKARVVEGAVQVGDRVRARVDAARRAAIMRNHTATHLLHAA 592 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS + PD LRFD TH + T+ +L++IED +N I + +PV + Sbjct: 593 LKRVLGDHVNQAGSLVAPDRLRFDFTHFEAPTAGQLRAIEDEINQQILRGIPVRWYWTSL 652 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A+ +GA AL G KY + VRVV + G +S LCGGTHV ST +I L +E S+ Sbjct: 653 EEALEAGALALFGEKYGNEVRVVQI-----GDYSLELCGGTHVVSTSDIGLFKFTAEGSV 707 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RR+EA+TG + +L Q+ L LA L+V ++ R+E + E +R+L QL Sbjct: 708 AAGVRRVEAVTGWGSLEYLRRQEAVLDRLAGTLRVPVDDLPARLEALVESHRELERQLRQ 767 Query: 775 AKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + +L D + ++A V ++ + D++ L+ D L+++ ++L G Sbjct: 768 LRSRLARQAADGLLEAAPQLAGVRVIAGELPVDDAEVLRETADYLRQRAGEAAVLL-GAR 826 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +A ++ VT +R +A L A+ L GGGGGGRP +AQ+GG + + +A+ Sbjct: 827 AGGRALLVAAVTPGAQERGLHAGRLVGEVARRL-GGGGGGRPDLAQAGGRDPGRLPEAL 884 >gi|73666779|ref|YP_302795.1| alanyl-tRNA synthetase [Ehrlichia canis str. Jake] gi|72393920|gb|AAZ68197.1| alanyl-tRNA synthetase [Ehrlichia canis str. Jake] Length = 891 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/900 (41%), Positives = 535/900 (59%), Gaps = 65/900 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V IR F++FF KNGH+L PSS LI +DP+L+FTN+GMV FK++FT + Sbjct: 11 VGDIRKLFVDFFIKNGHQLFPSSPLIVKDDPSLLFTNAGMVQFKHVFTDASNANVGTAVS 70 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKE A++LAW +TKE L++ Sbjct: 71 SQKCLRVGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKEFAVELAWSFVTKELALNKD 130 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY TVY ED+E F LWKKISG S ++II+I TNDNFWSM TGPCGPCSEIF+D GE I Sbjct: 131 KLYFTVYHEDQETFDLWKKISGFSENRIIKIKTNDNFWSMGSTGPCGPCSEIFYDYGEDI 190 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GGLPG+ EE G R+ EIWNLVFMQ+ +++ E LPK IDTGMGLER++ V+Q + Sbjct: 191 EGGLPGTPEEDGARFTEIWNLVFMQYNRKSDGELCALPKKCIDTGMGLERISAVMQGVHD 250 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYDI+LFK LI+ S++ +G NN + HRVI DH+RS++FLIA+G+ P NEGR Y+LR Sbjct: 251 NYDINLFKDLIKVSKKQSG---NTNNELAHRVIADHVRSAAFLIAEGLTPGNEGRDYILR 307 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDER 357 RI+RRA Y +L Y LM + P+L E M YPELI AK LI L+ E+E Sbjct: 308 RIIRRAARYVYMLKYDGALMYQIFPSLIDEKSYAYMADYYPELINAKDLIISILKIEEEN 367 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F TL + L LL+ L L +L GD+AFKLYDT+G P+DI DI+ +G+ D Sbjct: 368 FKDTLVKALPLLEKELVGLSSGGVLPGDIAFKLYDTYGFPVDITLDIIKEKGIK-FDEQG 426 Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F +++Q+ R++ HS+ K+W +KE YG T+F+GY+ Sbjct: 427 FYDQMDKQKERSKLNHSIKSVQQLKGKLWVDIKEHYGGTKFVGYEQYSTR---------- 476 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC--- 533 + ++ I + + E A G +V V+ D TPFYAE+GGQ GDTG Sbjct: 477 ------------AKVLSIIYEGDKSTEVANVGDRVNVLLDITPFYAESGGQKGDTGVFNV 524 Query: 534 AIGDGIRL-------QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 + G L ++ D +K + +++H +++ G L + ++ + R+ L N Sbjct: 525 IVRQGKELLSCDDVVEVLDTKKVLDTLYIHECVIKTGSLIVGDIICAEVNCEKRKNLCAN 584 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH+ L +++ + Q GS ++ D LRFD ++ +T +L IED + +I N Sbjct: 585 HSATHLLHYVLKSVIDRSIIQKGSLVSDDKLRFDFSYGVALTKEQLTLIEDKMFSLIRNN 644 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 PVVT I + ++AIA GA AL KY D VRV+++ S LC GTHV TGEI Sbjct: 645 SPVVTHICDLKEAIADGAVALFTEKYEDHGVRVINIG------DSKELCCGTHVRYTGEI 698 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 IVSE+S+ G+RRIEA+TGQ A + Q++ L +A +K N++ +++++ Sbjct: 699 GCFKIVSEASVACGVRRIEAVTGQHAIDYFREQEKMLHLIAESVKSPIDNILIQIDKLNR 758 Query: 766 EYRKLQLIHAKRKLQ------LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++L K+KL +N++ ++ KI ++F+ S ++S + V + + Sbjct: 759 NNQEL-----KQKLSDAYFSVINLQGIATDKIGSIDFL---YSSLNSVPIDVVRKFINEH 810 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + + +IM + +I V +L + A D + +V+ GGG +AQ G Sbjct: 811 LVNDMIMFFSNVVGRNVMYVIGVASNLHSKIKATDFVEIIGEVIKSKGGGNN-QLAQISG 869 >gi|326561060|gb|EGE11425.1| alanyl-tRNA synthetase [Moraxella catarrhalis 7169] Length = 893 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/922 (41%), Positives = 535/922 (58%), Gaps = 70/922 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 7 NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L + Sbjct: 67 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EI Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GGLPG+ E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q NY+ D+F L+ + + G+ + + N + +V+ DH+RS +FLIADG++P Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F KTL +GL LL L L + ++L G+ FKLYDT+G P D+ DI+ +G+ Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVREKGIT- 425 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F ++ EQR+RAR +G + +L + AT+F+GY+ L Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I +HH +V+ G + S + Q R + NHSATHL Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVE 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768 +SE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ ++ R Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755 Query: 769 ---------KLQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQ 817 KL +HA L N++D+ K IA VN M D+K L+++ D ++ Sbjct: 756 EKQIERLNQKLASLHA-NSLTDNLKDIHGQKVLIATVNGM-------DNKALRTLSDDMK 807 Query: 818 KKIQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 K+ GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P Sbjct: 808 SKLADGIVILASVYTADGEDKIAMTASVGKHLTSKIKAGDIIKYLSENL-GGKGGGKPDF 866 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 AQ G + + + G+ ++ Sbjct: 867 AQGGATDVANLPKLMTGLTDWI 888 >gi|93006462|ref|YP_580899.1| alanyl-tRNA synthetase [Psychrobacter cryohalolentis K5] gi|122415158|sp|Q1QA88|SYA_PSYCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|92394140|gb|ABE75415.1| alanyl-tRNA synthetase [Psychrobacter cryohalolentis K5] Length = 890 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/914 (41%), Positives = 539/914 (58%), Gaps = 58/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F++FF H + SSSLIP NDPTL+FTN+GM FK F G E Y T Sbjct: 8 ADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVTS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ I W+ LT + +D+ Sbjct: 68 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAIDK 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+T+Y+ D+EAF +W K G+ +++IIRI N DNFW+M +TGPCGPC+E+ Sbjct: 128 NRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGPCGPCTEV 187 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GGLPG+ EE G+RYIEIWN VFMQF +Q LP S+DTGMGLER++ Sbjct: 188 FYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGSMLPLPAPSVDTGMGLERIS 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q NY+IDLF HL+ A+ ++ ++ E + +VI DH+R+ SFLIADG+ P+N Sbjct: 248 AIMQGVHGNYEIDLFVHLMDAAAEI--LEIENQQQSSLKVIADHIRAVSFLIADGVTPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG ++ L EMG+AYPEL + +IE ++ E Sbjct: 306 EGRGYVLRRIIRRAVRHGNKLGADSEFFYKMVAPLVAEMGTAYPELKDKQSVIENAIQKE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + +F KTL +GL LL L L + L+G+ AFKLYDT+G P+D+ DI RG+ ID Sbjct: 366 ETQFAKTLAQGLRLLASELEGLKDGDTLSGEAAFKLYDTYGFPVDLTADITRERGIV-ID 424 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F++ ++ QR RAR +G + + S+ + T FIGY+ L Sbjct: 425 EAEFDEHMQAQRERAR------DAGKFDVDYSSVIQVENPTTFIGYEQLE---------- 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-C 533 GV+ + A+ Q G + G + +V D+TPFYAE GGQ+G+ G Sbjct: 469 ----------EEGVT--IDALYQDGNPADSLTEGMEGVIVLDRTPFYAEGGGQVGELGEI 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+ ++ D +K + I +H+ +V G + T+ + + R + NHSATHLL Sbjct: 517 RTASGV-FEVQDTKKSGQAI-IHYGVVTMGDISTKQTADAQVLSSIRAASAKNHSATHLL 574 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG V+Q GS ++ + LRFD ++ KP+++AE+ IE VN+ I N P Sbjct: 575 HAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSTAEITRIERLVNEQIQANTPARIEN 634 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSV---EYEDG--GVHSSALCGGTHVSSTGEIMLL 708 M+ ++A+ GA AL G KY VRV+++ DG S LCGG HV TG+I +L Sbjct: 635 MSIDEAMKQGAMALFGEKYGSDVRVLTMGTGSIIDGQRKPFSIELCGGLHVKRTGDIGVL 694 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SES I AGIRRIEA+TG A ++ +++L LAS LKV + V RV + ++ R Sbjct: 695 KITSESGIAAGIRRIEAVTGMNAIKNIQQSEQQLSELASQLKVKRPEVAQRVRTMADKQR 754 Query: 769 KL--QLIHAKRKL----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +L QL ++K+ N+ D IA + +S +D K ++++MD ++ K+ Sbjct: 755 ELEKQLERLEQKIASAQAANLLD-DVQTIAGTPVLISTLSGIDGKSIRTLMDDIKSKLPD 813 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L+G K+++ ++ V + + + A D+ R A L GG GGG+P AQ G P Sbjct: 814 SVIVLIG-DKDEQLALAASVAKSVTAKVKAGDIIRHLASEL-GGKGGGKPDYAQGGAPKA 871 Query: 883 NKADQAIAGVASFL 896 + + + +++ Sbjct: 872 ANTNAVVNALPAWI 885 >gi|188996094|ref|YP_001930345.1| alanyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1] gi|205830234|sp|B2V709|SYA_SULSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|188931161|gb|ACD65791.1| alanyl-tRNA synthetase [Sulfurihydrogenibium sp. YO3AOP1] Length = 876 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/895 (41%), Positives = 546/895 (61%), Gaps = 51/895 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +FL++F+ GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+ Y+ + QK Sbjct: 9 IRQSFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRAASCQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 R GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ ++ + +L Sbjct: 69 VFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTEHLEIPKEKLL 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++V++ED+EAF++W K GL KI R+ DNFWSM +TGPCGP SEI++D+GE G Sbjct: 129 VSVFEEDDEAFEIWNKHIGLDESKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGEKF-GN 187 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 +E+ RY+EIWNLVFMQ+ + K LP SIDTGMGLER+A+VLQ +NYD Sbjct: 188 PEFGAEDDFRYLEIWNLVFMQYNRDEKGVLHPLPNPSIDTGMGLERIASVLQGVDSNYDT 247 Query: 247 DLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 DLFK +IQ +E+V+G +Y N + + RVI DHLR+ +FLI+DG+LPANEGRGYVLRRI Sbjct: 248 DLFKPIIQFAEEVSGKEYGKNEKDDIAMRVIADHLRAITFLISDGVLPANEGRGYVLRRI 307 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ Y + LG +P + + + +M +AYPELIQ + I+ +SE+E+F KTL R Sbjct: 308 IRRALRYGKNLGIEKPFLYEGVDVVIEKMKTAYPELIQNRSFIKTITKSEEEKFIKTLKR 367 Query: 365 GLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 + +L ++ K+ L G+ FKLYDT+G P+D+M++IL G D+I F+ L Sbjct: 368 SMDILYQMIEQARKENRRHLTGEETFKLYDTYGFPIDLMEEILKDEGFT-FDLIEFHNLL 426 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EEQ+ RAR S S + ++ +LK K QF+GY+ L E+ KVL Sbjct: 427 EEQKERARK-SWKSQSKEIKPVYLTLKNKLPENQFVGYETL-----TSENSKVL------ 474 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 AI++ ++V+ A G+ +E+V D TPFY E GGQ+GD G GD + Sbjct: 475 -----------AIIKGDQLVDTAKEGEDIEIVLDITPFYPEKGGQIGDRGIIEGDEFLFE 523 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D Q +G+ VH V G ++ + D + R + +H+ATHLLH AL +LG Sbjct: 524 VLDTQTPVDGLIVHKGKVLFGSVKEGAYVRAKTDKERRENIMRHHTATHLLHAALRNVLG 583 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS ++ + LRFD TH + +T ELK++E+ VN I +N VV + M E+A+ S Sbjct: 584 DHVKQAGSLVSDEYLRFDFTHFESMTDEELKAVEELVNREIMKNEEVVCQEMQYEEALKS 643 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A+ KY D VRV+S G+ S LCGGTHV TG+I I+SES++ +G RR Sbjct: 644 GAMAIFEEKYADVVRVIS-----AGI-SKELCGGTHVKRTGDIGYFKILSESAVSSGTRR 697 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLIHAKRK 778 IEA+ G +A + + +K L+ L + ++ RV +I E+ R+++ + K Sbjct: 698 IEAVAGIKAVEKGLQEHYIIKDLSRLLTAKEDQLLDRVLKLQNQIKEKEREIENLRKKLA 757 Query: 779 L-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 L LN+ + K+A V+ + ++ EL+ + D L++K+ +I++ E Sbjct: 758 LSNINENLNIIEKEGFKVAYVS-----VENLNPNELREIADHLRQKLGKSVILVASKDAE 812 Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 K K + ++ V+++L + + A D+ + A G GGGRP AQ G + +K Q Sbjct: 813 KQKVNFVVAVSKELSENYKAGDIVKKVASA-ANGSGGGRPDFAQGGINDTSKLSQ 866 >gi|222110972|ref|YP_002553236.1| alanyl-tRNA synthetase [Acidovorax ebreus TPSY] gi|221730416|gb|ACM33236.1| alanyl-tRNA synthetase [Acidovorax ebreus TPSY] Length = 874 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/892 (41%), Positives = 520/892 (58%), Gaps = 56/892 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 7 SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 67 SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPP 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI N DNFW MA+TGPCGPCSEI Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PGS E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 187 FYDHGEHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LI+A+ + TG N + +VI DH+R+++FL+ADG++P+N Sbjct: 247 AILQHVHSNYEIDLFDALIKAAARETGTSDLTNPSL--KVIADHIRATAFLVADGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP++ + + I + LR E Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVQDLVQQMGDAYPKIREQQARITDVLRVE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G + L GDVAFKL+DT+G PLD+ D+ RG+ +D Sbjct: 365 EERFFETLAHGMEILDSALA--GGAKTLPGDVAFKLHDTYGFPLDLTNDVCRERGV-NVD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+E Q+S ARA K+ +L+ A QF GY+ L Sbjct: 422 EAGFATAMEHQKSTARAAG-------KFKMDRALEYTGAANQFTGYEQL----------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S+ + A+ G +GQ VV D+TPFYAE+GGQ+GD G Sbjct: 464 ------------AESAKIVALYVDGTSTAALHAGQSGVVVLDRTPFYAESGGQVGDQGTI 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + D QK ++ HH +E G L ++ +D Q R NHS THL+H Sbjct: 512 GAGSACFSVADTQKIKADVYGHHGTLEAGTLNVGDTVQAQVDLQLRAATMRNHSVTHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H+ P+T+A+++ IE VN + N R+M Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNAPLTAAQIREIERLVNAEVLANTDTNARLM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV TG+I L +V+E Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIGT------SRELCGGTHVRRTGDIGLFKVVAEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+TG+ A ++L + + A+ LK + R+ ++ + L +L Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPPAELTARIGGALDQIKTLEKEL 745 Query: 773 IHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + DV ++ + D+K L+ MD L+ K+++ I+L Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRETMDKLKDKLKTAAIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + + K + VT D + R A DL A + GG GGG+P MA +GG N Sbjct: 806 VDGD-KVQLAAGVTADSIGRVKAGDLVNFVAAQV-GGKGGGKPDMAMAGGTN 855 >gi|325295645|ref|YP_004282159.1| alanyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066093|gb|ADY74100.1| alanyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 879 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/902 (42%), Positives = 554/902 (61%), Gaps = 57/902 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+ H + SS LIP NDPTL+FTN+GMV FK+ F G+EKP ++ T+ QK Sbjct: 9 IREAFLRFFEDKEHFRVKSSPLIPKNDPTLLFTNAGMVQFKDYFLGKEKPPFKRATSCQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RAGGKHNDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+TK F L + RLY Sbjct: 69 CMRAGGKHNDLENVGKTGRHHTFFEMLGNFSFGDYFKKEAIEFAWELVTKVFKLPEDRLY 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++VY++D+EAF++W K+ G+ +KI ++ DNFW+M +TGPCGPCSEI++D+GE G Sbjct: 129 VSVYEKDDEAFEIWNKLIGIPENKIYKLGEKDNFWAMGDTGPCGPCSEIYYDRGEEFACG 188 Query: 187 LPGSSEEG----ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 + E G +RY+EIWNLVFMQFE+ + L SIDTGMGLER+A+VLQ + Sbjct: 189 --ENCEIGKCDCDRYLEIWNLVFMQFERDESGKLTPLAHPSIDTGMGLERIASVLQNVPS 246 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NY+ DL L++ + ++G Y + + + RVI DHLR+ +FLIADG+LP+NEGRGYV Sbjct: 247 NYETDLLFPLVKWASDLSGTPYGKDEKSSTSMRVIADHLRALTFLIADGVLPSNEGRGYV 306 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA + RLLG +P + + + MG YPE+++ LI++ E+ERF K Sbjct: 307 LRRIIRRASRHGRLLGIDKPFLFEGVDEVLNIMGDTYPEIVENGRLIKKVTLKEEERFSK 366 Query: 361 TLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL+RGL + ++ L GKD I+ G+ AFKLYDT G PLD++ ++ L +D+ Sbjct: 367 TLERGLYIFAEIIDKLRNEGKD-IIPGEEAFKLYDTFGFPLDLILEVANDENLK-VDVSG 424 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE--KYGATQFIGYDLLRGSKFMKEDRKV 475 F + L EQ+ RAR G G + I L++ + + FIGYD L G Sbjct: 425 FEKLLAEQKERARKAWKG---GVQKVISPELQKLSEESPSIFIGYDHLEG---------- 471 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V I++ G ++EEA G++V V+ D+TPFY E GGQ+GDTG Sbjct: 472 -------------IGKVTGILKDGRLIEEAKEGEEVTVILDKTPFYPEKGGQVGDTGIIE 518 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+ ++ D Q E + H +V++ ++ + ++ + R+ + H+ATHLLH Sbjct: 519 GNNCYCEVLDTQNITENLIGHKVVVKKEKVKVGDIVNAIVNEERRKAIMRAHTATHLLHK 578 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV Q GS + PD LRFD TH + T EL++IE+ V + + +N PV M+ Sbjct: 579 ALREVLGNHVKQAGSLVLPDRLRFDFTHFEAPTEEELQTIEETVYNWVLKNYPVKIEEMS 638 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++AI GA AL G KY D VRVV V S LCGGTHV +G+I ++SESS Sbjct: 639 YDEAIERGAIALFGEKYGDVVRVVDVG-----GVSVELCGGTHVERSGDIGFFKLISESS 693 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G RRIEA+ G+ A ++ ++ +K L S L+ + ++ +VE++ EE + + Sbjct: 694 ISSGTRRIEAVVGKEAFKYIEEKEALIKKLRSSLQSPEEQLLQKVEKLKEELKAKEKELE 753 Query: 776 KRKLQLN-------VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + K +L VED I + ++ + KEL + D ++ K ++ +M+V Sbjct: 754 RIKKKLATAEIDQIVEDAPI--INGIKVVTAKLEGFGGKELAEIADVIRNKAKTAAVMIV 811 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 GI K+ KAS+LI +T+DL DRF A ++ R A +L G GGGRP MAQ G N +K ++A Sbjct: 812 GI-KDGKASLLIALTKDLTDRFKAGEIIREIAPIL-EGRGGGRPDMAQGGVQNLSKLEEA 869 Query: 889 IA 890 + Sbjct: 870 FS 871 >gi|258545023|ref|ZP_05705257.1| alanine--tRNA ligase [Cardiobacterium hominis ATCC 15826] gi|258519721|gb|EEV88580.1| alanine--tRNA ligase [Cardiobacterium hominis ATCC 15826] Length = 876 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/895 (42%), Positives = 530/895 (59%), Gaps = 61/895 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL++F ++GH+++ SSSL+P NDPTL+FTN+GMV FK+IFTG E Y+ T Sbjct: 8 STAEIRRAFLDYFAEHGHKIVHSSSLVPGNDPTLLFTNAGMVQFKDIFTGSESRDYKRAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L Sbjct: 68 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKAEAIPFAWNLLTQVFGLPP 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 +L +TVY ED+EAF +W+ GL DKIIRI +DNFW+M +TGPCGPCSE Sbjct: 128 EKLCVTVYHEDDEAFAIWRDKVGLPEDKIIRIGDKPGKAKYESDNFWAMGDTGPCGPCSE 187 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + GG PGS EE G+R+IEIWN+VFMQFE+ LP+ SIDTGMGLER+ Sbjct: 188 IFYDHGPDVWGGPPGSPEEDGDRFIEIWNIVFMQFERDASGTMKPLPRPSIDTGMGLERI 247 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ +NY+ID+F++LI A+ + TG + +VI DH+R++ FL+ DG+LP Sbjct: 248 AAVLQGVHSNYEIDIFRNLIAAAAEATGCDDLAQTSL--KVIADHIRATVFLMVDGVLPG 305 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRIMRRA+ + LG +P L+ L EMG AYPE+++A+ I + +R Sbjct: 306 NEGRGYVLRRIMRRAIRHGYKLGQNQPFFYKLVAPLVAEMGEAYPEIVEAEARITDAVRR 365 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERF +TL+ GL +L+ L + EI G+ FKLYDT+G P+D+ DI RGL + Sbjct: 366 EEERFAQTLEAGLEVLEKALGEMRGTEI-PGETVFKLYDTYGFPVDLTADIARERGLT-L 423 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLLRGSKFMK 470 D+ ++ A+ EQR RA+A F +K G T F GY+ G Sbjct: 424 DMDGYDAAMAEQRERAKAAGK-----------FDAAQKLDISGKTAFDGYEKESG----- 467 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 S+ + I G+ V + +G + VV D+TPFY E+GGQ+GD Sbjct: 468 ------------------SAQIMQIFADGKAVTKLDAGARGVVVLDRTPFYGESGGQVGD 509 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G ++ D QK+ + F+H VE+G + + ID + R + +HSAT Sbjct: 510 SGTLRTTSGVFRVEDTQKQGDA-FLHIGHVEQGDISVGETAQAEIDRERRAAIKRHHSAT 568 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL + LG+HV Q GS + RFD +H K +++A++ +E +N I N PVV Sbjct: 569 HLLHKALRSTLGTHVQQKGSLVDERRTRFDFSHDKALSAADIAQVEAMMNAQILGNAPVV 628 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M+R+ A GA AL G KY D VRVVS+ +DG S LCGGTHV GEI L + Sbjct: 629 IEQMSRDAAQKKGAMALFGEKYGDVVRVVSMG-DDG--FSIELCGGTHVGRLGEIGLAKV 685 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VS+ ++ AG+RRIE + G A HL D L A+ LK ++ R+ + ++ + L Sbjct: 686 VSQGAVSAGVRRIEVVCGLAALEHLTHSDALLTESAALLKTDGEHLPERISALQQQLKTL 745 Query: 771 QLIHAKRKLQL-NVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826 + K QL D +I +N + + +D+ L+ D L+ ++ + +++ Sbjct: 746 EKEVQTLKRQLAQGGDGGGAEIQVINGWKTLALQRDGIDNATLRDTADQLRDRLGADVVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + + + + LIV + +A ++ R A V GG GGGRP AQ+GG N Sbjct: 806 IGSVDDD--TARLIVSVGKTANGLHAGNIIRELA-VHIGGKGGGRPDFAQAGGKN 857 >gi|121594335|ref|YP_986231.1| alanyl-tRNA synthetase [Acidovorax sp. JS42] gi|205829967|sp|A1W7D0|SYA_ACISJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120606415|gb|ABM42155.1| alanyl-tRNA synthetase [Acidovorax sp. JS42] Length = 874 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/892 (41%), Positives = 520/892 (58%), Gaps = 56/892 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 7 SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 67 SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPP 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI N DNFW MA+TGPCGPCSEI Sbjct: 127 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PGS E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 187 FYDHGEHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMDEQGNVKPLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LI+A+ + TG N + +VI DH+R+++FL+ADG++P+N Sbjct: 247 AILQHVHSNYEIDLFDALIKAAARETGTSDLTNPSL--KVIADHIRATAFLVADGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP++ + + I + LR E Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVQDLVQQMGDAYPKIREQQARITDVLRVE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G + L GDVAFKL+DT+G PLD+ D+ RG+ +D Sbjct: 365 EERFFETLAHGMEILDSALA--GGAKTLPGDVAFKLHDTYGFPLDLTNDVCRERGV-NVD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+E Q+S ARA K+ +L+ A QF GY+ L Sbjct: 422 EAGFATAMEHQKSTARAAG-------KFKMDRALEYTGAANQFTGYEQL----------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S+ + A+ G +GQ VV D+TPFYAE+GGQ+GD G Sbjct: 464 ------------AESAKIVALYVDGTSTAALHAGQSGVVVLDRTPFYAESGGQVGDQGTI 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + D QK ++ HH +E G L ++ +D Q R NHS THL+H Sbjct: 512 GAGSACFTVADTQKIKADVYGHHGTLEAGTLNVGDTVQAQVDLQLRAATMRNHSVTHLMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H+ P+T+A+++ IE VN + N R+M Sbjct: 572 KALREVLGDHVQQKGSLVNAERTRFDFAHNAPLTAAQIREIERLVNAEVLANTDTNARLM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV TG+I L +V+E Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIGT------SRELCGGTHVRRTGDIGLFKVVAEG 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+TG+ A ++L + + A+ LK + R+ ++ + L +L Sbjct: 686 GVAAGVRRIEAVTGENALAYLQSLESTVDQAAAALKAPPAELTARIGGALDQIKTLEKEL 745 Query: 773 IHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + DV ++ + D+K L+ MD L+ K+++ I+L Sbjct: 746 AALKGKLASSQGDELAGQAVDVKGIKVLAARLEGADAKTLRETMDKLKDKLKTAAIVLAA 805 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + + K + VT D + R A DL A + GG GGG+P MA +GG N Sbjct: 806 VDGD-KVQLAAGVTADSIGRVKAGDLVNFVAAQV-GGKGGGKPDMAMAGGTN 855 >gi|317154429|ref|YP_004122477.1| alanyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2] gi|316944680|gb|ADU63731.1| alanyl-tRNA synthetase [Desulfovibrio aespoeensis Aspo-2] Length = 879 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/905 (41%), Positives = 531/905 (58%), Gaps = 52/905 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FLE+FQ+N H ++ SS LIP +DPTL+FTN+GMV FK +F GQEK Y T Sbjct: 2 HAAEIRQRFLEYFQENNHAIVESSPLIPKDDPTLLFTNAGMVQFKRLFLGQEKREYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ W LT+E L + Sbjct: 62 TSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRYCWQFLTEELKLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 RLYIT+Y +D+EA +LW+K++G+ ++I R+ DNFWSM +TGPCGPCSE+ FDQGE Sbjct: 122 DRLYITIYKDDDEAGELWQKVAGVPIERIYRLGEKDNFWSMGDTGPCGPCSEVHFDQGEH 181 Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 C P G + +RY+EIWNLVFMQ++Q R LP+ SIDTGMGLER+A V Q Sbjct: 182 VGCGPECGIGKC-DCDRYLEIWNLVFMQYDQAEDGTRTPLPRPSIDTGMGLERIAAVCQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGR 297 +NY+ DLF+ +I+ + ++ G+KY N ++ +VI DH R+ +FLI D +LP+NEGR Sbjct: 241 VASNYETDLFQSIIRYTAELAGVKYRENQEIDTALQVIADHSRAIAFLIPDQVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GY+LRR++RRA + +L+G TEP + + +MG + EL +K + E +R E+E Sbjct: 301 GYILRRLIRRACRFGKLMGLTEPFLWKTASKVVDDMGGHFSELRDSKEFMIEVVRGEEEG 360 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KTLD+GL +L+ L+ L K I+ GD AF+LYDT+G P+DI++D+ +G++ +D Sbjct: 361 FAKTLDKGLDMLEAELAELTAAKAAIVPGDTAFRLYDTYGFPIDIVRDVAERQGMS-VDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ ++EQ+SR++A G G ++ +L E+ + F GY+ + Sbjct: 420 PGFDALMQEQKSRSKAAWKGSGDKDVAAVFHTLLEQGITSGFTGYETMADQ--------- 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S I + G +VE +G VV TPFY E+GGQ GDTG Sbjct: 471 -------------SEITHVLSPAGAVVERLAAGDTGWVVTRSTPFYGESGGQTGDTGEIA 517 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 R +TD K ++ + H + +G L+ S+ LT+D R NH+ THLLH Sbjct: 518 ASSGRGAVTDTVKPSQSLTAHKVEMAQGELKPGNSVFLTVDRGQRLATMRNHTVTHLLHA 577 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG H Q GS + PD LRFD TH K +T E+ +E VN I +PV +M+ Sbjct: 578 ALQKVLGDHARQAGSLVGPDRLRFDFTHIKGLTVEEIGRVETLVNQSILDAIPVSREVMS 637 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A GA AL G KY D V V+ V GV S CGGTH+ +TG IVSES Sbjct: 638 IEQAQTKGATALFGEKYGDTVSVIEVP----GV-SMEFCGGTHLDNTGIAGSFVIVSESG 692 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AGIRRIEA TG A ++ + +S LK + RV + ++ + + A Sbjct: 693 VAAGIRRIEAATGGNAIAYFNERRAAAAEASSMLKAQPAELPARVRALQQQVKDM----A 748 Query: 776 KRKLQLNVEDLS---------CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + QL S +I V ++ + D + MDAL+ K+ S I+ Sbjct: 749 REMKQLQTRLASGTGRDMLAEAQQIGGVTVLAVEVEAPDMNVMLEQMDALRSKLPSAIVC 808 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 LV + K SV + VT+DL RF A +L + ++A+V GGGGGRP +A++GG + + Sbjct: 809 LVAGHADGKVSVALSVTKDLHGRFKAGELIKPVAAEVG--GGGGGRPDLARAGGTDASGI 866 Query: 886 DQAIA 890 A+A Sbjct: 867 KNALA 871 >gi|323699014|ref|ZP_08110926.1| alanyl-tRNA synthetase [Desulfovibrio sp. ND132] gi|323458946|gb|EGB14811.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans ND132] Length = 879 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/908 (41%), Positives = 547/908 (60%), Gaps = 58/908 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FLE+F++NGH ++ SS L P +DP+L+FTN+GMV FK +F GQEK Y T Sbjct: 2 KANEIRQRFLEYFERNGHTIVESSPLTPKDDPSLLFTNAGMVQFKKLFLGQEKRDYIRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ W LT+E LD+ Sbjct: 62 TAQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFCWQFLTEELKLDK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 RLYIT+Y +D+EA +LW+K++G+ ++I R+ DNFWSM +TGPCGPCSE+ +DQGE Sbjct: 122 SRLYITIYKDDDEAGELWRKVAGVPEERIYRLGEKDNFWSMGDTGPCGPCSEVHYDQGEE 181 Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 C P G + +R++EIWNLVFMQ++Q R LP+ SIDTGMGLER+A V+Q Sbjct: 182 VGCGPNCGIGKC-DCDRFLEIWNLVFMQYDQAEDGTRTNLPRPSIDTGMGLERIAAVVQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGR 297 +NY+ DLF+ +I+ + + G+KY + ++ +VI DH R+ +FLI D +LP+NEGR Sbjct: 241 VHSNYETDLFQSIIKYTADLAGVKYRESEEIDTALQVIADHSRAIAFLIPDQVLPSNEGR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GY+LRR++RRA + +L+G T + + +MG Y EL + + + E +R E+E Sbjct: 301 GYILRRLIRRAYRFGKLMGLTGTFLWKTASKVIDDMGGHYKELEETRNFMVEVVRGEEES 360 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KTLD+GL +L+ L+ L K I+ G+ FKLYDT+G P+DI++D+ +G+ G+D Sbjct: 361 FAKTLDKGLEMLEEELAELKKAGAAIVPGETTFKLYDTYGFPIDIVRDVAEQQGM-GVDE 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ ++EQ+ R++A G G ++ +L E+ ++F GY+ + Sbjct: 420 AEFDKFMQEQKQRSKAAWKGSGEKDVASVFQTLLEQDVTSEFSGYETMADQ--------- 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S+I + +GE+V+E +G+ +V + TPFY E+GGQ+GDTG Sbjct: 471 -------------SAIAYVLTPEGEVVDELKAGESGWLVAEVTPFYGESGGQVGDTGAIA 517 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + D K ++ + H +V G+L+ + L +D R NH++THLLH Sbjct: 518 ARNGKADVLDTVKPSKNLTAHKIVVSEGVLKPGDAAFLNVDRSQRLATMRNHTSTHLLHA 577 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG H Q GS + PD LRFD TH K ++ E+ +E VN I + +PV +M+ Sbjct: 578 ALQKVLGDHAKQAGSLVGPDRLRFDFTHIKGLSPEEIAEVEKLVNQAIFEAIPVTREVMS 637 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A A GA AL G KY D V V+ V GV S CGGTH+ +TG I SES Sbjct: 638 IEAAQAKGATALFGEKYGDTVSVIEVP----GV-SMEFCGGTHLDNTGIAGSFVITSESG 692 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQ 771 + AGIRRIEA TG A + L + E + LK ++ +V ++ ++ R+++ Sbjct: 693 VAAGIRRIEAATGHNAVAWLNERREAASEAGAMLKAQPADLPKKVRDLQQQVKDMNREMK 752 Query: 772 LIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV---MDALQKKIQS 822 + AK R + VE+L+ K+ V +VD+ + + MDAL+ K+ S Sbjct: 753 SLQAKLASGAGRDMMSEVEELNGVKVLAV--------KVDAPNMGVMLEQMDALRSKLPS 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G+I L+ ++ K SV + VT+DL RF A DL + A + GGGGGGRP +A++GG N Sbjct: 805 GVICLIAPHEDGKVSVALSVTKDLHSRFKAGDLIKPVAGEV-GGGGGGRPDLARAGGSNP 863 Query: 883 NKADQAIA 890 D+A+A Sbjct: 864 EGIDKALA 871 >gi|158521281|ref|YP_001529151.1| alanyl-tRNA synthetase [Desulfococcus oleovorans Hxd3] gi|205830076|sp|A8ZY67|SYA_DESOH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|158510107|gb|ABW67074.1| alanyl-tRNA synthetase [Desulfococcus oleovorans Hxd3] Length = 876 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/903 (41%), Positives = 534/903 (59%), Gaps = 46/903 (5%) Query: 8 RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKC 67 R TFL++F+ GH ++ SSSL+P DPTL+F N+GMV FK +F G+EK Y TT QKC Sbjct: 7 RKTFLDYFENQGHRVVRSSSLVPQADPTLLFVNAGMVQFKRVFMGEEKRDYTTATTSQKC 66 Query: 68 VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYI 127 VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAWDLL + L + +L + Sbjct: 67 VRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKERAIELAWDLLLNGYKLPEDKLSV 126 Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187 +V+ ED+EAF +WK GL+ +I R+ DNFWSM +TGPCGPCSEI+ D+GE G Sbjct: 127 SVFHEDDEAFSIWKDRIGLAESRIARLGEKDNFWSMGDTGPCGPCSEIYMDRGEKYGCGR 186 Query: 188 PGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 P + + +R++EIWN+VFMQ+ +Q E LP SIDTGMGLER+ V+Q++ NY+ Sbjct: 187 PDCAPGCDCDRFMEIWNMVFMQYNRQASGELTPLPHPSIDTGMGLERICAVIQDRDTNYE 246 Query: 246 IDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DLF +I+ E +G Y + V +VI DH R+++FLI DG+LP+NEG+GYVLRR Sbjct: 247 TDLFIPIIRGIEAASGKTYGQAPDMDVCMKVIADHSRAAAFLIGDGVLPSNEGKGYVLRR 306 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ Y R LG T P + + M YPEL + I L +E+ RF +TLD Sbjct: 307 ILRRAIRYGRQLGLTRPFLSRTAGTVFEVMAEPYPELKENASFITNVLENEEVRFSETLD 366 Query: 364 RGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 GL LL L + + ++ G V FKLYDT+G P+DI++D++ + + G+D+ F+ A Sbjct: 367 NGLRLLSETLDGMAAKGESVIPGGVIFKLYDTYGFPVDIVRDVVREK-MIGLDMEGFDAA 425 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + EQ++++R+ + + + +L K T F+GY L Sbjct: 426 MAEQKAKSRSV---VDFSKQPEAYRNLSAKGMKTGFVGYAGL------------------ 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + V A+V G +E A +GQ++E+V D TPFY +GGQ+GD G DG+ + Sbjct: 465 -----AAQATVLALVNGGSELETATAGQEIEIVTDTTPFYGASGGQMGDVGVITADGLEI 519 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +TD K G+ +H V G ++ ++ L +D RR + NH+ATHLLH AL I+ Sbjct: 520 TVTDTIKDPTGLVIHKGQVASGTVKKGQTISLAVDEDRRRATAANHTATHLLHAALGGIV 579 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV Q GS ++PD +RFD TH + A L IE VND I +N V M+ + A+ Sbjct: 580 GDHVKQAGSMVSPDRMRFDFTHFSMLDRATLDRIEVFVNDRIRENRAVTISEMSMDQAME 639 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL KY D VRVV+V+ GV S LCGGTH TG+I L I+SE+S+ +G+R Sbjct: 640 QGATALFEEKYGDTVRVVAVD----GV-SKELCGGTHAQRTGDIGLFKILSEASVASGVR 694 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+TG A + + Q L A LK S + R++++ E R + A K L Sbjct: 695 RIEAVTGAGAVAFVQEQMGILAEAAGMLKESPAALAARIQKLLAESRTMAKEIAGLKTSL 754 Query: 782 NVEDLSCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 + K D V ++ ++ + L+ + D L+ K+ SG+++L G + + K Sbjct: 755 ATASMEGPKSDDAKTLNGVKVIARTVTADNPAALRDLADRLKDKLGSGVVVL-GAAADGK 813 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 A +++ V+ DL RF A D+ R A + GG GGGRP MAQ+GGP + AI Sbjct: 814 AFLIVSVSRDLTGRFKAGDIVR-EAAAVVGGKGGGRPDMAQAGGPQPEHLEAAIQKACDM 872 Query: 896 LKK 898 + K Sbjct: 873 IGK 875 >gi|325204570|gb|ADZ00024.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240355] Length = 874 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/902 (42%), Positives = 532/902 (58%), Gaps = 68/902 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------TER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V+E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQSGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELAKAKAELAVHAGAKLLDDAKDLGAAKLVATQI------EADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NK 884 K Sbjct: 856 GK 857 >gi|326567519|gb|EGE17634.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC1] Length = 893 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/922 (41%), Positives = 533/922 (57%), Gaps = 70/922 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 7 NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L + Sbjct: 67 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EI Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GGLPG+ E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q NY+ D+F L+ + + G+ + + N + +V+ DH+RS +FLIADG++P Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ +G+ Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F ++ EQR+RAR +G + +L + AT+F+GY+ L Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I +HH +V+ G + S + Q R + NHSATHL Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVE 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768 VSE I AG+RRIEA+TG A ++ D++L LA+ K + + RV ++ ++ R Sbjct: 696 VSEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755 Query: 769 ---------KLQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQ 817 KL +HA L N++D+ K IA VN M D+K L+++ D ++ Sbjct: 756 EKQIERLNQKLASLHA-NSLTDNLKDIHGQKVLIATVNGM-------DNKTLRTLSDDMK 807 Query: 818 KKIQSGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 K+ GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P Sbjct: 808 SKLADGIVILASVYTADGEDKIAMTASVGKHLTSKIKAGDIIKYLSENL-GGKGGGKPDF 866 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 AQ G + + + G+ ++ Sbjct: 867 AQGGATDVANLPKLMTGLTDWI 888 >gi|71908916|ref|YP_286503.1| alanyl-tRNA synthetase [Dechloromonas aromatica RCB] gi|83305844|sp|Q47AU8|SYA_DECAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71848537|gb|AAZ48033.1| alanyl-tRNA synthetase [Dechloromonas aromatica RCB] Length = 871 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/907 (42%), Positives = 536/907 (59%), Gaps = 56/907 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FF GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y TT Sbjct: 4 SEIRQQFLDFFASKGHQIVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYSRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT+ + L + + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIKYAWELLTEVYKLPKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +TVY ED+EA+ +W K G+ +++IRI N DNFW M +TGPCGPC+EIF+ Sbjct: 124 LTVTVYAEDDEAYDIWTKEIGVPVERVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D GE GG PGS EE G+R+IEIWN VFMQF + LPK S+DTGMGLER++ V Sbjct: 184 DHGEKYWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERVSAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 LQ NY+IDLF+ L++A+ + T + ++ +V+ DH+R+ SFL+ADG++P NE Sbjct: 244 LQGVHANYEIDLFQALLKAAARETSDADLDSPSL---KVLADHIRACSFLLADGVIPGNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RRA+ + LG ++P L EMG AYPEL Q + I TL+ E+ Sbjct: 301 GRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGMAYPELGQNQAKIVATLKQEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 +RF +T++ G+ +L+G L LG+ + NGD AFKL+DT+G PLD+ QDI C +D Sbjct: 361 DRFFETIEHGMAILEGELKSLGEGGVFNGDTAFKLHDTYGFPLDLTQDI-CREHKITVDA 419 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +F+ A+ Q+ +ARA K+ +L+ AT F GY L Sbjct: 420 AAFDAAMARQKEQARAAG-------KFKMATNLEYDGPATTFHGYAALE----------- 461 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V A+ + G V + G+ VV D TPFYAE+GGQ+GD G Sbjct: 462 ------------YKANVLALYKDGIAVNQLNEGEMGVVVLDDTPFYAESGGQVGDCGALQ 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + D QK +F HH +V+ G + + +D Q R+++ NHSATHLLH Sbjct: 510 SVHGIFAVEDTQKIQATVFGHHGVVKTGTITVGNGVAAKVDVQARQRIMRNHSATHLLHK 569 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + PD RFD H++P+T E++ +E+ VN I N+ TR++ Sbjct: 570 ALREVLGDHVQQKGSQVDPDKTRFDFVHNQPMTDEEIRRVENIVNAEILANVATETRVLP 629 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A GA L G KY D VRV+ + S LCGGTHVS TG+I L I +E Sbjct: 630 IAEAQKLGAMMLFGEKYGDDVRVLDIG------SSRELCGGTHVSRTGDIGLFSITAEGG 683 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + AG+RR+EA+TG A +++ + L +A LKV +V GRV + ++ +KL +L Sbjct: 684 VAAGVRRVEAVTGDNALAYMQDMESALGGVAGTLKVLPKDVHGRVLAVLDQVKKLERELA 743 Query: 774 HAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL D D+ ++ + D L+ MD L+ K++S I+L + Sbjct: 744 ALKGKLASAQGDDMLSNAVDIKGAKVLAATLEGADVNALRETMDKLKDKLKSAAIVLASV 803 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + K +++ VT DL + A +L L A+ + GG GGGRP MAQ+GG A+A Sbjct: 804 A-DGKVTLIAGVTADLTGKVKAGELVNLVAQQI-GGKGGGRPDMAQAGGTQPENLPAALA 861 Query: 891 GVASFLK 897 VA +++ Sbjct: 862 SVAGWVE 868 >gi|332160302|ref|YP_004296879.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664532|gb|ADZ41176.1| alanyl-tRNA synthetase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 838 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/878 (43%), Positives = 541/878 (61%), Gaps = 62/878 (7%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GM FK++F G +K Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154 SFG YFK AI AW+LLT E F+L + +L++TVY+ D+EA+++W G+ ++IIRI Sbjct: 61 SFGDYFKHDAISFAWELLTGEQWFNLPKEKLWVTVYETDDEAYEIWANDIGIPRERIIRI 120 Query: 155 TTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFM 206 N DNFW M +TGPCGPC+EIFFD G+ I GG PGS+EE G+RYIEIWN+VFM Sbjct: 121 GDNKGSAFASDNFWQMGDTGPCGPCTEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFM 180 Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG 266 QF +Q+ LPK S+DTGMGLER+A VLQ +NY+IDLF+ LI+A +VTG Sbjct: 181 QFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIKAVAEVTGATDLS 240 Query: 267 NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 + + RVI DH+RS +FLI+DG++P+NE RGYVLRRI+RRA+ + +LG E L+ Sbjct: 241 SKSL--RVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLV 298 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV 386 L MG A EL Q + ++E+ L++E+E+F +TL+RGL LLD LS L D L+G+ Sbjct: 299 APLIAVMGPAADELKQQQAMVEQVLKTEEEQFARTLERGLALLDEELSKLTGD-TLDGET 357 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF 446 AF+LYDT+G P+D+ D+ R L +D F QA+E QR RAR S G G+ I Sbjct: 358 AFRLYDTYGFPVDLTADVCRERNLK-VDEAGFEQAMEAQRRRARESS-GFGADYNNLIRV 415 Query: 447 SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 A+QF GYD + + V A+ + GE V+E Sbjct: 416 D-----SASQFSGYDHVH-----------------------QQATVTALFRNGEAVDEIH 447 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 G++ VV +QTPFY E+GGQ+GDTG + D QK + I H + G LR Sbjct: 448 EGEEAVVVLNQTPFYGESGGQVGDTGELKNATATFAVADTQKYGQAIG-HLGQLAHGTLR 506 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 S+ ID R ++ +NHSATHLLH AL LG HV+Q GS + LRFD +H + Sbjct: 507 VNHSIDAQIDAARRNRIRLNHSATHLLHAALRKTLGDHVAQKGSLVNDKYLRFDFSHFEA 566 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + +++ +ED VN+ I +N+PV T +M + A GA AL G KY+D+VRV+++ Sbjct: 567 MKPEQIRLVEDMVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVRVLTM----- 621 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 G S+ LCGG H S TG+I L I+SES AGIRRIEA+TG+ A + L Q + L+ +A Sbjct: 622 GDFSTELCGGIHASRTGDIGLFRILSESGTAAGIRRIEAVTGEGAIALLHQQSDLLEDVA 681 Query: 747 SFLKVSQGNVVGRVEEIWEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802 +K N+ +V + + R+LQ + ++ Q + S K+ VN + ++S Sbjct: 682 HLVKGDTHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSNAKL--VNGVKLLVS 739 Query: 803 EVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL-ARL 858 ++D+ E L++++D L+ ++ S II+L I+ + K S+++ VT+DL + A +L A + Sbjct: 740 QLDNVEPKMLRTMVDDLKNQLGSAIIVLATIA-DDKVSLIVGVTKDLTGKVKAGELIADI 798 Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + +V GG GGGRP MAQ+GG N A+A V +++ Sbjct: 799 AQQV--GGKGGGRPDMAQAGGTNVQALPSALASVEAWV 834 >gi|326577502|gb|EGE27382.1| alanyl-tRNA synthetase [Moraxella catarrhalis O35E] Length = 893 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/918 (41%), Positives = 537/918 (58%), Gaps = 62/918 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 7 NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L + Sbjct: 67 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EI Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GGLPG+ E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q NY+ D+F L+ + + G+ + + N + +V+ DH+RS +FLIADG++P Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F KTL +GL LL L L + ++L G+ FKLYDT+G P D+ DI+ +G+ Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVREKGIT- 425 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F ++ EQR+RAR +G + +L + AT+F+GY+ L Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I +HH +V+ G + S + Q R + NHSATHL Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPAHVE 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE I AG+RRIEAITG A +++ D++L LA+ K + + RV ++ ++ R L Sbjct: 696 ISEQGISAGVRRIEAITGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821 + K+ +LN + S H + ++ + +I ++ +D+K L+++ D ++ K+ Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKTLRTLSDDMKSKLA 811 Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ G Sbjct: 812 DGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGG 870 Query: 879 GPNGNKADQAIAGVASFL 896 + + + G+ ++ Sbjct: 871 ATDVANLPKLMTGLTDWI 888 >gi|317122060|ref|YP_004102063.1| alanyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885] gi|315592040|gb|ADU51336.1| alanyl-tRNA synthetase [Thermaerobacter marianensis DSM 12885] Length = 905 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/886 (42%), Positives = 537/886 (60%), Gaps = 47/886 (5%) Query: 18 NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDL 77 +GH ++PSSSLIP +DPTL+FTN+GMV FK++FTG+EK Y+ TT QKC+RAGGKHNDL Sbjct: 32 HGHTIVPSSSLIPKDDPTLLFTNAGMVQFKDVFTGKEKVPYKRATTAQKCMRAGGKHNDL 91 Query: 78 DNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAF 137 +NVG+T RHHTFFEMLGNFSFG YFK AI AW LT+E L + RL+ T+Y ED+EAF Sbjct: 92 ENVGKTARHHTFFEMLGNFSFGDYFKRDAIHFAWTFLTEELGLPKERLWATIYREDDEAF 151 Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CIPGGLPGSSEEG 194 +LW++++G+ A +I+R+ DNFW+M +TGPCGPCSEI +D+GE C + + Sbjct: 152 QLWQEVTGIPASRIVRLGEKDNFWAMGDTGPCGPCSEIVYDRGEEFRCEAETCAIGACDC 211 Query: 195 ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQ 254 +R++EIWNLVFMQF + LP+ SIDTGMGLER+A+V+Q +N+D DLF+ LI+ Sbjct: 212 DRWLEIWNLVFMQFNRDETGRMEPLPRPSIDTGMGLERIASVMQGVASNFDTDLFRPLIR 271 Query: 255 ASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313 A E++TG +Y EG RVI DH R+ +FLIA+G+LP+NEGRG+VLRRI+RRA+ + R Sbjct: 272 AVEELTGRRYEEGEPGFPFRVIADHARACTFLIAEGVLPSNEGRGHVLRRILRRAVRFGR 331 Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373 +LG EP + L+ + MG AYPE+ Q + +R E+ERF +TLD+G+ +L V+ Sbjct: 332 ILGIQEPFLYRLVDTVGEVMGGAYPEVRQRADYVARVIRGEEERFFRTLDQGMAILAEVI 391 Query: 374 --SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR- 430 + D ++ G+ AF LYDT+G PLD+ D GL +D F QA+ QR RAR Sbjct: 392 ERARARGDGVIRGEEAFVLYDTYGFPLDLTVDAAEEAGLR-VDREGFEQAMAVQRQRARA 450 Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490 A + G + +L ++ AT F GY+ L ED Sbjct: 451 AREVAEGWDPGSPLALALADEP-ATVFTGYERL-------ED----------------EG 486 Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550 V+ +V+ + VE A +G++V VV D+TPFYAE GGQ+GDTG G RL++ D Q Sbjct: 487 TVRLLVRGDQPVERARAGEEVGVVLDRTPFYAERGGQVGDTGWLEAPGARLEVLDTQPLP 546 Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610 G F+H A V G + + +D R + NH+ATHLLH AL +LG HV+Q GS Sbjct: 547 GGRFLHKARVVEGTVTVGDRVQGRVDAARRAAIMRNHTATHLLHAALKRVLGDHVNQAGS 606 Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670 + PD LRFD TH + T +L++IED +N +I +PV + E+A+ +GA AL G Sbjct: 607 LVAPDRLRFDFTHFEAPTPDQLRAIEDEINGVILAGVPVRWYWTSLEEALEAGAMALFGE 666 Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 KY VRVV + G +S LCGGTHV+ST +I L +E S+ AG+RR+EA+TG Sbjct: 667 KYGREVRVVQI-----GDYSLELCGGTHVASTSDIGLFKFTAEGSVAAGVRRVEAVTGWS 721 Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSC 788 + +L ++ L+ LA L+V ++ R+E + E +R L QL + +L D Sbjct: 722 SLEYLRQREAVLQRLAGTLRVPVDDLPERLEALVEAHRDLERQLRQLRGRLARQAADGLL 781 Query: 789 HKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845 + + I+ E+ D++ L+ D L+++ ++L G +A ++ +T Sbjct: 782 AEAPVAAGVRVIVGELPVDDAEVLRETADYLRQRAGEAAVLL-GARSGDRALLVAAITPG 840 Query: 846 LLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQAI 889 R + RL V GGGGGGRP +AQ+GG + +A+ Sbjct: 841 AQQR--GLHAGRLVGDVARRVGGGGGGRPDLAQAGGREPGRLAEAL 884 >gi|296313800|ref|ZP_06863741.1| alanine--tRNA ligase [Neisseria polysaccharea ATCC 43768] gi|296839624|gb|EFH23562.1| alanine--tRNA ligase [Neisseria polysaccharea ATCC 43768] Length = 873 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/916 (42%), Positives = 541/916 (59%), Gaps = 68/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TTELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L + T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYEGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V+E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFLKK 898 +K + +A V ++K+ Sbjct: 856 DKLPEMLASVEGWVKE 871 >gi|261392163|emb|CAX49673.1| alanyl-tRNA synthetase (alanine--tRNA ligase; AlaRS) [Neisseria meningitidis 8013] Length = 874 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/902 (42%), Positives = 531/902 (58%), Gaps = 68/902 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------TER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V+E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQSGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELAKAKAELAVHAGAKLLDDAKDLGAAKLVATQI------EADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NK 884 K Sbjct: 856 GK 857 >gi|225849840|ref|YP_002730074.1| alanyl-tRNA synthetase [Persephonella marina EX-H1] gi|225645058|gb|ACO03244.1| alanyl-tRNA synthetase [Persephonella marina EX-H1] Length = 878 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/897 (40%), Positives = 538/897 (59%), Gaps = 44/897 (4%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +FL +F++ GH + S+S+IP DPTL+F N+GMVPFKN+F G E+ Y+ + Sbjct: 7 NQIRESFLRYFEERGHTRVKSASIIPETDPTLLFVNAGMVPFKNVFLGLEEKPYKRAVSC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK R GKHNDLDNVG T RHHTFFEMLGNFSFG YFK AIQ AW+ LT+ ++ + + Sbjct: 67 QKVFRVSGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKREAIQFAWEYLTEVLEIPEEK 126 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V++ED+EAF++W K+ GL +KI R+ DNFWSM ETGPCGPCSEI++D+GE Sbjct: 127 LLVSVFEEDDEAFEIWNKVIGLPEEKIHRLGVEDNFWSMGETGPCGPCSEIYYDRGEAFG 186 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 GS E+ RY+E+WNLVFMQ+ + LPK +IDTGMGLER+A+VLQ +NY Sbjct: 187 NPELGSPEDI-RYLEVWNLVFMQYNRDKDGRLTPLPKPNIDTGMGLERIASVLQGVNSNY 245 Query: 245 DIDLFKHLIQASEQVTGMKYE-----GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + DLF LI+ ++ V+G Y+ N V RVI DHLR+ +FLI+DG+ P+NEGRGY Sbjct: 246 ETDLFMPLIEFAQSVSGKSYDPEDPGSENTVAMRVIADHLRAITFLISDGVFPSNEGRGY 305 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ Y LG P + + + M YPELI + I+ ++SE+E+F Sbjct: 306 VLRRILRRALRYGMELGIERPFLFEGVDVVVDIMKEPYPELIGNRSFIKNLVKSEEEKFI 365 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KTL +GL +L ++ K+ + G AF LYDT+G P+D+++DI G G+DI Sbjct: 366 KTLRKGLEILYDIIQKAKKEGRNHITGKEAFLLYDTYGFPVDLLEDIARDNGF-GVDIAE 424 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 + + LEEQ+ RARA S + + ++ LK K F+GY+ L +D ++L Sbjct: 425 YYKLLEEQKERARA-SWKSQAKEIKPVYLELKNKLPENVFVGYERLE-----VDDAQIL- 477 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 +++++ V+ G+ E+V D TPFY E GGQ+GD G GD Sbjct: 478 ----------------SVLKEDREVDTLHEGETGEIVLDVTPFYPEKGGQVGDRGIIEGD 521 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G + D Q EGI VH V G ++ ++ +D R + +H+ATHLLH AL Sbjct: 522 GFLFDVVDTQTPVEGIIVHRGKVIHGTVKKGETVSAKVDKDTRLDIMRHHTATHLLHAAL 581 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS + PD LRFD TH + +T ++K +E+ VN+ I +N PV+ + M + Sbjct: 582 RNLLGDHVKQAGSLVHPDYLRFDFTHFESLTDEDIKRVEELVNEEIMKNEPVICKEMPYD 641 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +AI SGA A+ KY D VRV+S G+ S+ LCGGTHVS TG+I I+SE+++ Sbjct: 642 EAIKSGAIAIFDEKYGDTVRVIS-----AGI-STELCGGTHVSRTGDIGYFKIISETAVA 695 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLI 773 +G RRIEA+ G++A + + ++++ L + ++ ++E ++ E R+++ I Sbjct: 696 SGTRRIEAVAGRKAVERGLREHFLIENVKRALTAKEDEIIDKIETLKLKLKEAQREIENI 755 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 K + + L+ + + + + +L+ + D + K+ ++M+ + KE Sbjct: 756 KKKSVVDRITDILTVEEKEGIKIAYGSVEGLQPNDLRDLADVARSKLGRSVVMIASVDKE 815 Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K K + ++ V++DL DR A ++ + A L GG GGGRP MAQ GG +K +A Sbjct: 816 KNKVNFIVAVSKDLTDRIKAGEIVKKVAPAL-GGKGGGRPDMAQGGGTEPSKLKEAF 871 >gi|86160202|ref|YP_466987.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C] gi|123496877|sp|Q2IG40|SYA_ANADE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|85776713|gb|ABC83550.1| alanyl-tRNA synthetase [Anaeromyxobacter dehalogenans 2CP-C] Length = 905 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/938 (39%), Positives = 541/938 (57%), Gaps = 82/938 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR F +F+++GH + SSSL+P NDPTL+FTN+GMV FK++FTG+E+ Y T Sbjct: 5 TAAEIRELFQRYFEEHGHRRVASSSLVPQNDPTLLFTNAGMVQFKDVFTGRERRDYSRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+L+T + Sbjct: 65 TAQKCVRAGGKHNDLENVGFTARHHTFFEMMGNFSFGDYFKADAIAWAWELVTSPAWLGI 124 Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 + RL TV+ DEEAF+LW K G+ ++I ++ DNFW+M +TGPCGPCSE Sbjct: 125 AKDRLAATVFAGEGTLPWDEEAFELW-KAQGVPVERIHKLGAKDNFWAMGDTGPCGPCSE 183 Query: 175 IFFDQGECIPGG-------LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 + + QG +P G + + +R++EIWNLVFMQFE+ LPK SIDTG Sbjct: 184 LHYFQGNDVPCAEEQAGRKCQGVACDCDRWLEIWNLVFMQFERGQDGGLTPLPKPSIDTG 243 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285 GLER+A V Q K +NYD DLF+ +I A E ++ +Y+ ++ V+ RVI DH R+++FL Sbjct: 244 AGLERLAAVAQGKRSNYDTDLFRSIIHAVEGLSDKRYDAASDDGVSMRVIADHARATTFL 303 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 + DG+LP+NEGRGYVLRRIMRRA+ + + LG P + + A+ EMG+AYPE + + Sbjct: 304 VGDGVLPSNEGRGYVLRRIMRRAIRHGKRLGLERPFLAAVCGAVIDEMGAAYPETRENRA 363 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD----------------EILNGDVAFK 389 IE+ + E+E F +TLD+GL +L+G + L D I++G VAF+ Sbjct: 364 FIEKVAQQEEESFRRTLDKGLAILEGEMRKLVPDATHDGKPATPAPDRARPIIDGKVAFQ 423 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 LYDT G PLD+ + I RG +D F++ + EQ RAR+ G G + + + Sbjct: 424 LYDTFGFPLDLTRVIAAERGF-DVDEQGFDRHMAEQ--RARSEWKGSGEQGVDDLHKQIA 480 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 + G +F+GY+L + VKAI+ G V A G Sbjct: 481 GELGEVKFLGYEL-----------------------PAARAQVKAILANGARVARAGKGD 517 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 KVE+V D TPFY E+GGQ+GD G G G+ +++ D Q+ G+ H V RG + Sbjct: 518 KVEIVTDATPFYGESGGQVGDVGHITGAGLEIRVDDAQRPVPGLVTHVGEVLRGEVAVGD 577 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ L++D + R + NHSATHLL AL +LG HV Q GS + PD LRFD +H +P+T Sbjct: 578 AVELSVDDRRRDLVRANHSATHLLQLALREVLGEHVKQAGSVVAPDYLRFDFSHFQPVTE 637 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL ++E VN+++ +N T ++ E+A +GA + G KY D VRVV + Sbjct: 638 EELAAVERRVNELVRENAETETAVLKLEEARHAGAMMIFGEKYGDVVRVVRIG------P 691 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 S LCGGTHV +G+I I SE SI +G+RR+ A TG RA + E+L+ A+ L Sbjct: 692 SKELCGGTHVRRSGDIAFFKIGSEESIASGVRRLVAYTGARAVEVQQREAEELRRAAALL 751 Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS------- 802 K V ++E+ + L+ R L+ + + D+ ++ + Sbjct: 752 KAGALEVSQKIEQTQRRVKDLE-----RALEEARSKAAAAQSGDLAALAKDVGGAKVLAA 806 Query: 803 --EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA 860 E D K L+ + D L+ ++ G++ L G ++ KA +L+ VT DL R A DL + +A Sbjct: 807 RVEGDGKALRELADKLRDRLGKGVVAL-GAEQDGKAILLVAVTRDLTARLKAGDLVKEAA 865 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 K++ GG GGG+P MAQ+GG + ++A+ VA + Sbjct: 866 KLV-GGSGGGKPDMAQAGGSDPAGLEKALEKVAELAAR 902 >gi|254786776|ref|YP_003074205.1| alanine--tRNA ligase [Teredinibacter turnerae T7901] gi|237686567|gb|ACR13831.1| alanine--tRNA ligase [Teredinibacter turnerae T7901] Length = 866 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/903 (42%), Positives = 536/903 (59%), Gaps = 47/903 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL++F + GHE++ SSSL+P NDPTL+FTN+GMV FK++F G EK Y Sbjct: 1 MMKSAEIRDAFLKYFAEQGHEVVNSSSLVPGNDPTLLFTNAGMVQFKDVFLGAEKRPYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ W+ LTK L Sbjct: 61 ATSSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIRFGWEFLTKVLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL++TV+ D+EA +W K G+SAD+ R+ DNFW M +TGPCGP SEIF+D G Sbjct: 121 PAERLWVTVHISDDEAADIWLKEVGVSADRFSRL-DEDNFWQMGDTGPCGPSSEIFYDHG 179 Query: 181 ECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 +PGG PGS +++ +RYIEIWNLVFMQFE+Q+ E LP+ S+DTGMGLER+A V+Q Sbjct: 180 ADVPGGPPGSENDDLDRYIEIWNLVFMQFERQSNGELVPLPRPSVDTGMGLERIAAVMQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NY+IDLF+ L++A+ TG N + RVI DH+RS SFL+ DG+LP+NEGRGY Sbjct: 240 VHSNYEIDLFQALLRAAATATGTSDLENKSL--RVIADHIRSCSFLVCDGVLPSNEGRGY 297 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRA+ + LG T L+ AL +MG AYPEL Q + IE+ L +E+++F Sbjct: 298 VLRRIMRRAIRHGHKLGQTNSFFHTLVAALVEQMGDAYPELRQHQAQIEKVLLTEEQQFA 357 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLD+G+ +L+ L+ L ++ G+ F LYDT+G P+D+ DI R L +D+ + Sbjct: 358 KTLDKGMAILEDSLAGL-DGSVIPGETVFTLYDTYGFPVDLTNDIARERSLT-LDLDGYE 415 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +E Q++RARA SG+ + + + G T+F+GY L Sbjct: 416 SLMEAQKARARA------SGSFKMDYTANLSLEGTTEFLGYTHLE--------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V+A+ + GE V + G + +V +TPFY E+GGQ GDTG Sbjct: 455 --------ESGKVQALFKDGEKVSQLNEGDEGVIVLSRTPFYGESGGQAGDTGYISTVAG 506 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++ D QK +H ++ G + + + +D R ++NHSATHLLH AL Sbjct: 507 KFEVRDCQKSGSN-HLHIGVMLSGSIAEQNEVTACVDQSVRAATALNHSATHLLHAALRK 565 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + LRFD +H + + AELK IE VN I +N V T + + + A Sbjct: 566 VLGDHVTQKGSLVDSQRLRFDFSHFEAVKPAELKQIERIVNGEIRRNTVVTTELCDMDTA 625 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA L G KY D VRV+S+ G S LCGGTHVS TG+I L+ I+SE I +G Sbjct: 626 KERGAMMLFGEKYGDEVRVLSM----GEGFSVELCGGTHVSRTGDIGLMRIISEGGIASG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+TG+ A + Q E L ++A LK ++ ++E++ + L+ A Sbjct: 682 VRRIEAVTGEHALVAVESQAELLSTVAGALKSGAESLPEKLEQLLARNKMLEKELAAANS 741 Query: 780 QLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L +I + + + VD+K L S +D L+ K+ S I+L ++ E Sbjct: 742 KLAAASADEWLGEAQEIEGLKLLVKSLEGVDAKSLLSTLDQLKNKLGSCAIILASVN-EG 800 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K ++ V+ D R A DL + A + GG GGGRP MAQ G + A+A V + Sbjct: 801 KIALAAGVSADSTKRLRAGDLLKYVATQV-GGKGGGRPDMAQGAGSDVAALPGALASVPA 859 Query: 895 FLK 897 +++ Sbjct: 860 WVQ 862 >gi|326569365|gb|EGE19425.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC8] Length = 893 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/918 (41%), Positives = 536/918 (58%), Gaps = 62/918 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 7 NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L + Sbjct: 67 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EI Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GGLPG+ E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q NY+ D+F L+ + + G+ + + N + +V+ DH+RS +FLIADG++P Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ +G+ Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F ++ EQR+RAR +G + +L + AT+F+GY+ L Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I +HH +V+ G + S + Q R + NHSATHL Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPAHVE 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ ++ R L Sbjct: 696 VSEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821 + K+ +LN + S H + ++ + +I ++ +D+K L+++ D ++ K+ Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811 Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ G Sbjct: 812 DGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKYLSENL-GGKGGGKPDFAQGG 870 Query: 879 GPNGNKADQAIAGVASFL 896 + + + G+ ++ Sbjct: 871 ATDVANLPKLMTGLTDWI 888 >gi|326571434|gb|EGE21449.1| alanyl-tRNA synthetase [Moraxella catarrhalis BC7] Length = 893 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/918 (40%), Positives = 537/918 (58%), Gaps = 62/918 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 7 NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L + Sbjct: 67 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EI Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GGLPG+ E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q NY+ D+F L+ + + G+ + + N + +V+ DH+RS +FLIADG++P Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F KTL +GL LL L L + ++L G+ FKLYDT+G P D+ DI+ +G+ Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDVLAGETVFKLYDTYGFPADLTADIVREKGIT- 425 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F ++ EQR+RAR +G + +L + AT+F+GY+ L Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I +HH +V+ G + S + Q R + NHSATHL Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVE 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ ++ R L Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821 + K+ +LN + S H + ++ + +I ++ +D+K L+++ D ++ K+ Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811 Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ G Sbjct: 812 DGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKYLSENL-GGKGGGKPDFAQGG 870 Query: 879 GPNGNKADQAIAGVASFL 896 + + + G+ ++ Sbjct: 871 ATDVANLPKLMTGLTDWI 888 >gi|119946985|ref|YP_944665.1| alanyl-tRNA synthetase [Psychromonas ingrahamii 37] gi|205830184|sp|A1T001|SYA_PSYIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119865589|gb|ABM05066.1| alanyl-tRNA synthetase [Psychromonas ingrahamii 37] Length = 867 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/893 (42%), Positives = 542/893 (60%), Gaps = 58/893 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + + + IR F +FF GH+ + + SL+P +DPTL+FTN+GM FK+ + G EK Y Sbjct: 2 IKSTNEIRQGFRDFFVNKGHQSVSTGSLVPHDDPTLLFTNAGMNQFKDTYLGTEKRAYTR 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ Q CVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ LT E L Sbjct: 62 ATSSQCCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKREAIGFAWEYLTVELGL 121 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TV+DED EA K+W + G+ ++RI DNFWSM +TGPCGPCSEIF+D G Sbjct: 122 PKDKLWVTVFDEDLEAEKIWIEEIGVDPKCVLRIGAKDNFWSMGDTGPCGPCSEIFYDHG 181 Query: 181 ECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG PG++EE G+R+IEIWN+VFMQ+ + LPK S+DTGMGLER++ ++Q Sbjct: 182 EDVWGGPPGTAEEDGDRFIEIWNIVFMQYNRHADGTMENLPKPSVDTGMGLERISAIMQN 241 Query: 240 KTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NY+IDLF+ LI+ +VTG E ++ RV+ DH+RS FLI DG++P+NEGRG Sbjct: 242 CHSNYEIDLFQGLIKKVAEVTGASDLEDKSL---RVVADHIRSCGFLICDGVMPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LG + + L +MG AYPEL + +L +E+ LR E+E+F Sbjct: 299 YVLRRIIRRAVRHGHKLGAKDIFFFKIYDELINQMGDAYPELSKQRLFVEKILRREEEQF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTLDRGL +LD L HL + +++ GDV FKLYDT G P D+ DI RGL ID F Sbjct: 359 AKTLDRGLQILDNELDHL-EGQVIPGDVVFKLYDTFGFPADLTADIARERGLT-IDEAGF 416 Query: 419 NQALEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 ++A+ EQR RA +A++ G+ T + +K T+FIGY+ L+G Sbjct: 417 DKAMAEQRKRAQQANNFGIDYNKT----LIIDQK---TEFIGYETLQG------------ 457 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++ V +V +G V G +V+ TPFYAEAGGQ GD G I + Sbjct: 458 -----------AATVTHLVVEGAFVNALKEGDSGQVILSATPFYAEAGGQSGDAGKLILN 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +TD +K + FVH V G ++ + +D R+ ++++HSATHLLH AL Sbjct: 507 NGVFVVTDTKKSGDA-FVHSGYVGMGSVKVNDKVHAEVDTARRQSIALHHSATHLLHAAL 565 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 LG HV+Q GS + D LRFD +H + +++ L + VN+ I N VVT++M+ E Sbjct: 566 RKTLGEHVTQKGSLVDADKLRFDFSHFEALSADSLSEVTFLVNEAIRNNYEVVTKLMDIE 625 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +S A AL G KY++ VRVV + G S+ LCGGTH TG++ L I SES I Sbjct: 626 EAKSSNAMALFGEKYDEMVRVVQM-----GDFSTELCGGTHAKRTGDLGLFLIRSESGIA 680 Query: 718 AGIRRIEAITGQRAR---SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 AG+RRIEA G A S L+ + +K L V+ G ++E++ + + L+ Sbjct: 681 AGVRRIEATVGSAADQVISELLYEVDKACGLVRGDHVNLGE---KIEQLVDRSKLLEKEV 737 Query: 775 AKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 A+ K ++ N+ D + +I V + I +D K L+ +D ++ K+QSGI++L Sbjct: 738 AELKAKIASAAGANLID-NAIEINGVKVVIANIEGIDPKLLRDSVDQMKNKMQSGIVVLA 796 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + K S++ V++DL+ + A +L L A + GG GGGRP MA +GG N Sbjct: 797 TVAADDKVSLIAGVSKDLIKKVKAGELVNLVAGPV-GGKGGGRPDMAMAGGNN 848 >gi|254673270|emb|CBA08330.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha275] Length = 885 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/914 (42%), Positives = 539/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 14 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 74 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 312 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + ++ IEE L++ Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEALKN 372 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + + Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V+E G VV D TPFYAE+GGQ+GD G Sbjct: 473 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 520 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 580 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 640 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866 Query: 883 NKADQAIAGVASFL 896 K + + V S+L Sbjct: 867 GKLPEMLVSVESWL 880 >gi|254670010|emb|CBA04754.1| Alanyl-tRNA synthetase [Neisseria meningitidis alpha153] Length = 885 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/914 (42%), Positives = 539/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 14 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 74 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +VI DH+RS SFLIADG+LP+ Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 312 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + ++ IEE L++ Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEALKN 372 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + + Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 473 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 520 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 580 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 640 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866 Query: 883 NKADQAIAGVASFL 896 K + + V S+L Sbjct: 867 GKLPEMLVSVESWL 880 >gi|218885980|ref|YP_002435301.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756934|gb|ACL07833.1| alanyl-tRNA synthetase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 879 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/905 (43%), Positives = 527/905 (58%), Gaps = 51/905 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLEFFQ GHE++ SSSL+P +DP+L+FTN+GMV FK IF GQEK Y Sbjct: 1 MITANEIRRRFLEFFQSQGHEIVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRGYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW LT++ L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEDLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TV+ +D+EA LW + + A++I R+ DNFWSM +TGPCGPCSEI DQG Sbjct: 121 PKERLYATVFRDDDEARDLWLAHTDIPAERIYRMGEKDNFWSMGDTGPCGPCSEILIDQG 180 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E C P G + +RY+EIWNLVFMQ++Q R LPK SIDTGMGLER+A V Sbjct: 181 EHMTCGPDCGIGKC-DCDRYLEIWNLVFMQYDQAADGTRTALPKPSIDTGMGLERIAAVC 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295 Q +N+D DLF+ +IQ + + G+ Y N+ + RVI DH RS +F+I DGILP+NE Sbjct: 240 QGVYSNFDTDLFQAIIQYTCGIAGVSYRANDETDTALRVIADHSRSMAFMITDGILPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + RL+G T + + MG YPEL + +R E+ Sbjct: 300 GRGYVLRRLIRRAYRFGRLIGQTGTFLHKTALKVVEVMGDDYPELRGNADFMARVVREEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TLD+GL LL+ L L + GDVAFKLYDT+G PLDI+ DI RG + Sbjct: 360 ERFNRTLDKGLALLEEELESLRGAGSTRVAGDVAFKLYDTYGFPLDIVNDIAEKRGFT-V 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + EQ+ RA+A G G + +L E+ ++FIGYD L G Sbjct: 419 DEEGFRTLMAEQKERAKAAWKGSGESDIASRFHALLEEGLRSEFIGYDHLSGD------- 471 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S +V + G E G K +V +TPFY +GGQ GD G Sbjct: 472 ---------------SRVVALLDATGLPSEGLPKGAKGYLVATRTPFYGASGGQTGDPGS 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ++ D K + + VH G + + + L ++ R + NH+ THLL Sbjct: 517 ITSPSGKARVLDTLKPSPELTVHQIETVDGEILPDQEVHLQVEEDERVASARNHTCTHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS + PD LRFD TH +T E+ ++E VN +I NLP+ T Sbjct: 577 HAALRRVLGDHVKQAGSLVAPDRLRFDFTHIAAMTPEEIAAVEREVNRVILANLPLETDH 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M + A+ GA AL G KY D VRVV++ E S LCGGTH+ +TG+ L I+SE Sbjct: 637 MAYDAALTRGAMALFGEKYGDEVRVVAIADE-----SVELCGGTHLRATGQAGLFLILSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + AG+RRIEAITG A +M Q +L +A LK G +V RVE + ++ + L+ Sbjct: 692 GGVAAGVRRIEAITGWNALRMVMDQRAELGQVAGLLKARSGEIVPRVEALQKDVKSLRKD 751 Query: 774 HAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGI 824 K Q N+ D ++A++N + + ++V+ K L+ +MD ++ K+ SGI Sbjct: 752 LEKASSQATSGQGRNIMD----ELAEINGVKVLAAKVEVPNVKALRDLMDDVRSKLPSGI 807 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 L + K S+++ V++DL DRF A L + A + GG GGGRP MAQ+GG N Sbjct: 808 ACLAAPDGD-KVSLIVAVSKDLHDRFTAPALIKAVAAAV-GGSGGGRPDMAQAGGTNPAG 865 Query: 885 ADQAI 889 D+A Sbjct: 866 IDEAF 870 >gi|115375322|ref|ZP_01462586.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] gi|115367695|gb|EAU66666.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] Length = 922 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/911 (41%), Positives = 547/911 (60%), Gaps = 56/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL+FF+ GH + SS L+P NDPTL+FTN+GMV FK++FTG+EK Y T Sbjct: 31 TASQIREAFLQFFEARGHRRVASSPLVPQNDPTLLFTNAGMVQFKDVFTGREKRDYSRAT 90 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 91 TSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAYAWEFVTRTLGLPI 150 Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL +TV++ D EAF+LW + G+ D+I+++ DNFW+M +TGPCGPCSEI Sbjct: 151 ERLAVTVFNGEQGVPWDAEAFELWAQ-QGVPRDRILKLGYKDNFWAMGDTGPCGPCSEIH 209 Query: 177 FDQGECIP-----GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228 + QG+ IP G P G + + +R++EIWNLVFMQFE++ K I LPK SIDTG Sbjct: 210 YHQGDDIPCSEAAAGRPCQGVACDCDRWLEIWNLVFMQFERKEKDAPLIPLPKPSIDTGA 269 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+A+V+Q K +NYD DLF+ ++ ++ G Y + RVI DH R+++FLI+D Sbjct: 270 GLERIASVVQGKRSNYDTDLFQGILGTVSELVGKPYTQEGGASMRVIADHSRAAAFLISD 329 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGYVLRRIMRRA+ + LLG + ++ + M AYPEL + + + Sbjct: 330 GVQPSNEGRGYVLRRIMRRAIRHGSLLGLEDVFFFKVVDRVIGLMSDAYPELREGRTFVL 389 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E R E+E F +TLDRG+ L+D ++ L + + L+G F L+ T+G P D+ Q IL Sbjct: 390 EVCRHEEETFRRTLDRGMKLIDEGIAKLKQAGETKLSGAEVFYLHGTYGFPWDLTQIILR 449 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 RG D+ F + +E++ + + G G ++ +L E+ G ++F+GY+ Sbjct: 450 ERGFDA-DLDGFWKEMEKEADKNKFG--GSGEKAISTVYQTLAERLGTSEFLGYEGEGHE 506 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 V+AI++ G V +A +G+ VE+V D+TPFY E+GG Sbjct: 507 GEGS---------------------VRAILKDGHEVGQASAGETVELVLDRTPFYGESGG 545 Query: 527 QLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 Q GDTG G G + Q+TDVQ+ G+ VHH V+ G +T + +D Q R+ + Sbjct: 546 QQGDTGQITGHGGKAVAQVTDVQRPVPGLIVHHVQVKEGTFQTGEMVQAGVDNQRRKSIR 605 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV Q GS + PD LRFD +H T +L+ +ED VN + Sbjct: 606 ANHSATHLLHKALKMVLGDHVKQAGSVVAPDFLRFDFSHFSVPTPEQLEQVEDIVNTWVR 665 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +N TR+M ++A SGA A+ G KY + VRVV+V + S+ LCGGTHV +G+ Sbjct: 666 ENTEAQTRVMKLDEAKKSGAVAMFGEKYGETVRVVTVHPQ-----STELCGGTHVRRSGD 720 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE--- 761 I L I+SE I +G+RRI A+TG A +L + +L+ A LK S + RVE Sbjct: 721 IGLFKILSEGGIASGVRRITAVTGLGALQYLRETERELRKAADLLKTSPKELSKRVEATQ 780 Query: 762 -EIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + E RK++ + K + N + L ++ + ++ + D K + + D L+ + Sbjct: 781 KRVKELERKVEEVAVKAQTASNKDVLEQAREVNGMKVLAIRVDPADDKIYRGLADQLRDR 840 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 I+SG++ +G K+ KA +L+ VT+D++++ +A L R AK + GG GGG+ MAQ+G Sbjct: 841 IRSGVVA-IGGEKDGKALILVAVTKDVVEKGISAGALVREMAKEV-GGKGGGKADMAQAG 898 Query: 879 GPNGNKADQAI 889 GP+ +K A+ Sbjct: 899 GPDASKLPAAL 909 >gi|326561486|gb|EGE11830.1| alanyl-tRNA synthetase [Moraxella catarrhalis 46P47B1] Length = 893 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/918 (40%), Positives = 536/918 (58%), Gaps = 62/918 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 7 NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L + Sbjct: 67 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EI Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GGLPG+ E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q NY+ D+F L+ + + G+ + + N + +V+ DH+RS +FLIADG++P Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ +G+ Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F ++ EQR+RAR +G + +L + AT+F+GY+ L Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I +HH +V+ G + S + Q R + NHSATHL Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPAHVE 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ ++ R L Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821 + K+ +LN + S H + ++ + +I ++ +D+K L+++ D ++ K+ Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811 Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ G Sbjct: 812 DGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGG 870 Query: 879 GPNGNKADQAIAGVASFL 896 + + + G+ ++ Sbjct: 871 ATDVANLPKLMTGLTDWI 888 >gi|326576631|gb|EGE26538.1| alanyl-tRNA synthetase [Moraxella catarrhalis 101P30B1] Length = 893 Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/903 (41%), Positives = 530/903 (58%), Gaps = 62/903 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 7 NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L + Sbjct: 67 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EI Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GGLPG+ E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q NY+ D+F L+ + + G+ + + N + +V+ DH+RS +FLIADG++P Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ +G+ Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F ++ EQR+RAR +G + +L + AT+F+GY+ L Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I +HH +V+ G + S + Q R + NHSATHL Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIETMVNQQILANTPAHVE 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ ++ R L Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821 + K+ +LN + S H + ++ + +I ++ +D+K L+++ D ++ K+ Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811 Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 GI++L I E K ++ V + L + A D+ + ++ L GG GGG+P AQ G Sbjct: 812 DGIVILASIYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGG 870 Query: 879 GPN 881 + Sbjct: 871 ATD 873 >gi|270157134|ref|ZP_06185791.1| alanyl-tRNA synthetase [Legionella longbeachae D-4968] gi|289164461|ref|YP_003454599.1| alanyl-tRNA synthetase [Legionella longbeachae NSW150] gi|269989159|gb|EEZ95413.1| alanyl-tRNA synthetase [Legionella longbeachae D-4968] gi|288857634|emb|CBJ11474.1| alanyl-tRNA synthetase [Legionella longbeachae NSW150] Length = 860 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/885 (43%), Positives = 544/885 (61%), Gaps = 58/885 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR F ++F K+GH+L+ SSSLIP NDPTL+FTN+GMV FK++F G E YQ T Sbjct: 4 SEIRQAFFDYFTKHGHQLVESSSLIPANDPTLLFTNAGMVQFKDVFLGVEARSYQRAVTA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+ LT+ L + R Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWEFLTQVMRLPEER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-GECI 183 L++TVY ED+EA +W K +SA + R DNFWSM +TGPCGPC+EIF+D E Sbjct: 124 LWVTVYKEDQEAEDIWLKEMKVSAARFSRCGEKDNFWSMGDTGPCGPCTEIFYDHGPEIP 183 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G E+G+RYIEIWNLVFMQF + + LPK S+DTGMGLER+A V+Q +N Sbjct: 184 GGPPGSPDEDGDRYIEIWNLVFMQFNRDKEGHLHPLPKPSVDTGMGLERLAAVVQGVHSN 243 Query: 244 YDIDLFKHLIQASE---QVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ID F++LIQ+ +VT + N+ + +VI DH+RSS+FLIADG++P NEGRGYV Sbjct: 244 YEIDTFQYLIQSIAKLGEVTDL-----NLTSLKVIADHIRSSAFLIADGVIPGNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG P HL+ +L T MG AYPELIQ+K IE L E+ +F + Sbjct: 299 LRRIIRRAIRHGNKLGLPTPFFSHLVESLITVMGDAYPELIQSKSHIERVLNQEENQFAR 358 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++GL LL + LG EI +G +AFKLYDT+G P+D+ DI +GL +D+ FNQ Sbjct: 359 TLEQGLRLLQEQMHSLGGHEI-SGQIAFKLYDTYGFPIDLTADIAREQGLF-VDMNGFNQ 416 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +++QR +++A S FS+ Y A + Y S F ++K Sbjct: 417 LMQQQREQSQAAS-----------QFSV--DYNANTQLDYQ----SDFHGYEKK------ 453 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 V + + A++Q G V+ G K VV D TPFYAE+GGQ+GD G R Sbjct: 454 ------EVEAKIIALLQDGMEVQVLNQGMKGAVVLDHTPFYAESGGQVGDKGMLTSTNFR 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D QKK + I VH+ + G + + ID + R + +NH+ATHLLH AL + Sbjct: 508 FRVDDTQKKGQAI-VHYGEMLDGTATLKQFVHAQIDNERREAIRLNHTATHLLHAALKAV 566 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 +G V Q GS + + RFD +H + +T+ +++ IE VN+ + N VVTR+M+ E A Sbjct: 567 VGPQVQQKGSLVDAERARFDFSHFESLTAEQIQEIECLVNEQVRANNEVVTRLMDIESAK 626 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA AL G KY D VRV+S+ G S LCGGTH TG+I L I++E I +GI Sbjct: 627 KSGAVALFGEKYADEVRVLSM-----GEFSKELCGGTHARRTGDIGLFKIIAEYGIASGI 681 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK---R 777 RRIE +TG+ A + + Q L LAS LK + N+ +V ++ E + ++ AK Sbjct: 682 RRIEMVTGRYALAWVNEQQALLNELASSLKTTATNLSDKVGQLLAENKSMEKEIAKLQTE 741 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K+Q + DL+ +++ VN +S +I + VD++ L++ +D L+ +++S +I+L + ++ Sbjct: 742 KVQKSGADLA-NEVEKVNGISLLIKQLEGVDNQTLRTTLDQLKSRLESAVIVLFTL-EQN 799 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 K +V+ V++ +L + A A L + G GGGR MAQ GG Sbjct: 800 KMNVIAGVSKSILGKVPAA--ATLVRHLC--GKGGGRDDMAQGGG 840 >gi|296112817|ref|YP_003626755.1| alanyl-tRNA synthetase [Moraxella catarrhalis RH4] gi|295920511|gb|ADG60862.1| alanyl-tRNA synthetase [Moraxella catarrhalis RH4] Length = 893 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/918 (40%), Positives = 535/918 (58%), Gaps = 62/918 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 7 NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L + Sbjct: 67 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EI Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GGLPG+ E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q NY+ D+F L+ + + G+ + + N + +V+ DH+RS +FLIADG++P Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ +G+ Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F ++ EQR+RAR +G + +L + AT+F+GY+ L Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I +HH +V+ G + S + Q R + NHSATHL Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P Sbjct: 576 LHAALRTILGDGVSQKGSMVSGDLLRFDFSYDKPLTEQNINQIETMVNQQILANTPAHVE 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE I AG+RRIEA+TG A ++ D++L LA+ K + + RV ++ ++ R L Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821 + K+ +LN + S H + ++ + +I ++ +D+K L+++ D ++ K+ Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811 Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ G Sbjct: 812 DGIVILASVYTADGEDKITMTASVGKHLTSKIKAGDIIKHLSENL-GGKGGGKPDFAQGG 870 Query: 879 GPNGNKADQAIAGVASFL 896 + + + G+ ++ Sbjct: 871 ATDVANLPKLMTGLTDWI 888 >gi|28198031|ref|NP_778345.1| alanyl-tRNA synthetase [Xylella fastidiosa Temecula1] gi|182680658|ref|YP_001828818.1| alanyl-tRNA synthetase [Xylella fastidiosa M23] gi|32130077|sp|Q87F43|SYA_XYLFT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830289|sp|B2I6K2|SYA_XYLF2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28056091|gb|AAO27994.1| alanyl-tRNA synthetase [Xylella fastidiosa Temecula1] gi|182630768|gb|ACB91544.1| alanyl-tRNA synthetase [Xylella fastidiosa M23] gi|307579119|gb|ADN63088.1| alanyl-tRNA synthetase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 884 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/911 (41%), Positives = 555/911 (60%), Gaps = 52/911 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK V Sbjct: 8 TTSKIRSDFLEFFKNKGHKIVPSAPLVPSNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT+ ++L Sbjct: 68 DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIMWAWELLTQVWELPP 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+E++ LW+ + G+ D+I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I G E+G+R+IEIWNLVFMQF++Q+ LP +DTGMGLER+A Sbjct: 188 FYDHGEHIPGGPPGSPGEDGDRFIEIWNLVFMQFDRQSDGTLVPLPTPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + ++T + N + VI DH R+ +FLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNKSLC--VIADHSRACAFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P +++P L MG AYP+L A + TL +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLIAVMGDAYPKLQAAAESVMRTLLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + + + ++ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMR-VD 423 Query: 415 IISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 + F A+ +QR ARA G G + + +L T F+GY+ L+ +D Sbjct: 424 MAGFEAAMTQQRKTARAAGKFGRGVQLSAERAATLS----PTVFLGYEQLQA-----DDL 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +V+ A++ G + + A G +V V+ D+TPFYAE+GGQ+GD G Sbjct: 475 RVV-----------------ALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGT 517 Query: 534 AIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + DG+RL++TD QK H A + +G ++ L ++ R+ +++NHSATHL Sbjct: 518 LMASDGVRLEVTDTQKLMGQFHGHVARIVQGGVKVGDVLSGSVAVARRKMVALNHSATHL 577 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL ++ G+HV Q GS + PD LRFD +H +PI++A++ IE VND + N V+ Sbjct: 578 LHCALRSVFGTHVVQKGSLVAPDRLRFDFSHFEPISAAQMTLIERMVNDEVRANHLVMIE 637 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M + A+ +GA AL G KY + VRVV++ S LCGGTH++ TG+I L I+S Sbjct: 638 QMGMQAALDAGAMALFGEKYGEHVRVVTMGT------SVELCGGTHITRTGDIGLFKIIS 691 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E + +G+RRIEA+TG+ A +H++ ++ +L +A + + NVV + ++ + + L+ Sbjct: 692 ECGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANNVVNHIRQLTDRQKTLER 751 Query: 773 IHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K +L + DL +ADV ++ + +D K L+ +D L+ ++ +I+L Sbjct: 752 ELEKLKGKLISGTITDLLSMAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVL 811 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G++ K A V V + + A L A + G GGGR AQ GG +G Sbjct: 812 AGVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQI-NGRGGGRVDFAQGGGEDGPSLRS 870 Query: 888 AIAGVASFLKK 898 A+ GVA+++K+ Sbjct: 871 ALDGVATWVKQ 881 >gi|89899401|ref|YP_521872.1| alanyl-tRNA synthetase [Rhodoferax ferrireducens T118] gi|122480046|sp|Q221G2|SYA_RHOFD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|89344138|gb|ABD68341.1| alanyl-tRNA synthetase [Rhodoferax ferrireducens T118] Length = 876 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/908 (40%), Positives = 535/908 (58%), Gaps = 56/908 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++V+ IR FL+FF GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 8 ASVADIRKIFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ W+LLTK + L Sbjct: 68 ASVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWGWELLTKVYKLP 127 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L+ TVY +D+EA+ +W + GL ++++RI N DNFW MA+TGPCGPCSE Sbjct: 128 ADKLWATVYIDDDEAYNIWTQEIGLPPERVVRIGDNKGAKYASDNFWMMADTGPCGPCSE 187 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G I GG PGS E+ G+RYIEIWN VFMQ++ Q LP +DTGMGLER+ Sbjct: 188 IFYDHGPAIAGGPPGSPEQDGDRYIEIWNHVFMQYDMQPDGSVKPLPAPCVDTGMGLERL 247 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A +LQ +NY+ID+F LI+A+ + TG GN + RVI DH+R+++FL++DG+LP+ Sbjct: 248 AAILQHVHSNYEIDIFDALIKAAARETGCTDLGNKSL--RVIADHIRATAFLVSDGVLPS 305 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV RRI+RRA+ + LG P L+P L T MG AYP L I + L++ Sbjct: 306 NEGRGYVQRRIIRRAIRHGYKLGQKAPFFYKLVPDLVTLMGEAYPGLATQAERIAQVLQA 365 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERF +TL G+ +LD L+ G ++L GDVAFKL+DT G PLD+ D+ RG+ + Sbjct: 366 EEERFFETLANGMQILDETLT--GDAKVLPGDVAFKLHDTFGFPLDLSADVCRERGVE-V 422 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F+ A+E+Q+++ RA G ++ +L+ F+GY+ L Sbjct: 423 DEAGFHAAMEKQKAQGRA----AGKFRMDR---ALEYSGDGNDFVGYERL---------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V+ IV A+ V E +GQ VV TPFY E+GGQ+GD G Sbjct: 466 ------------TEVTKIV-ALYADSTPVSELKAGQAGVVVLAATPFYGESGGQVGDQGA 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 DG + D QK +F HH +++ G L+ + ++ R NHSATHL+ Sbjct: 513 IFSDGAMFDVADTQKIKADVFGHHGVLKSGALKIGDVVTAHVNASLRAATQRNHSATHLM 572 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + + RFD H+ P+T +++ +E VN I N +R+ Sbjct: 573 HKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTDEQIREVEARVNSEILSNAATQSRV 632 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A +GA L G KY + VRV+ + S LCGGTHV+ TG+I L +V+E Sbjct: 633 MDIDAAQETGAMMLFGEKYGESVRVLDIG------ASRELCGGTHVARTGDIGLFKVVAE 686 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 S + +G+RRIEA+TGQ A S+L ++ + +A LK + RV + + + L + Sbjct: 687 SGVASGVRRIEAVTGQNALSYLQDLEDTVTQVAGTLKAPVVEINERVAGVLDHLKSLEKE 746 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLV 828 + K KL D + DV + +++ + D+K L+ MD L+ K++S +I+L Sbjct: 747 IAALKGKLASAQGDELVTQAVDVKGIKVLVAMLEGADTKTLRDTMDKLKDKLKSAVIVLA 806 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K + VT + + + A +L A + GG GGG+P MA +GG K A Sbjct: 807 AVEGD-KVQIAAGVTSNSVGKVKAGELVNFVASQV-GGKGGGKPDMAMAGGTEPAKLPAA 864 Query: 889 IAGVASFL 896 +A V +++ Sbjct: 865 LASVMAWV 872 >gi|269214760|ref|ZP_05987102.2| alanine--tRNA ligase [Neisseria lactamica ATCC 23970] gi|269209090|gb|EEZ75545.1| alanine--tRNA ligase [Neisseria lactamica ATCC 23970] Length = 885 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/915 (41%), Positives = 538/915 (58%), Gaps = 68/915 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 14 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 74 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF++L++A + TG + + +VI DH+RS SFLIADG+LPA Sbjct: 254 AAVMQHVHSNYEIDLFQNLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPA 312 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 372 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 429 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L + T+F GY +R Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYEGQDTEFKGYS----------ER 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V+E G VV D TPFYAE+GGQ+GD G Sbjct: 473 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 520 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 580 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 640 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866 Query: 883 NKADQAIAGVASFLK 897 K + +A ++K Sbjct: 867 GKLPEMLASAEGWVK 881 >gi|304386989|ref|ZP_07369247.1| alanine--tRNA ligase [Neisseria meningitidis ATCC 13091] gi|304338946|gb|EFM05042.1| alanine--tRNA ligase [Neisseria meningitidis ATCC 13091] Length = 885 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/914 (42%), Positives = 538/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 14 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 74 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 312 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 372 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ D+ G+ + Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADMARELGIE-L 429 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V+E G VV D TPFYAE+GGQ+GD G Sbjct: 473 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 520 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 580 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 639 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 640 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866 Query: 883 NKADQAIAGVASFL 896 K + + V S+L Sbjct: 867 GKLPEMLVSVESWL 880 >gi|226940409|ref|YP_002795483.1| alanyl-tRNA synthetase [Laribacter hongkongensis HLHK9] gi|226715336|gb|ACO74474.1| Sya [Laribacter hongkongensis HLHK9] Length = 877 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/916 (43%), Positives = 551/916 (60%), Gaps = 66/916 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR +L+FF GH+++PSSSL+P DPTL+FTN+GM FK++F G +K Y T Sbjct: 2 KASEIRQKYLDFFASKGHQIVPSSSLVPWEDPTLLFTNAGMNQFKDVFLGFDKRPYTRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT K L Sbjct: 62 TSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTDPKWLGL 121 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L +TVY D+EAF +W K G+ A+KI+RI N DNFW M +TGPCGPC+ Sbjct: 122 PKEKLMVTVYASDDEAFDIWNKEIGVPAEKIVRIGDNKGAPYASDNFWQMGDTGPCGPCT 181 Query: 174 EIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMGLER Sbjct: 182 EIFYDHGDHIWGGPPGSPDEDGDRFIEIWNNVFMQFNRTEDGVMNPLPKPSVDTGMGLER 241 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++ VLQ +NY+IDLF++LI+A+ + TG+ + + + +VI DH+R+ SFLIADG++P Sbjct: 242 ISAVLQGVHSNYEIDLFQNLIRAAARETGVPFSMDE-PSLKVIADHIRACSFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N+GRGYVLRRI+RRA+ + LG L+ L EMG AYPEL + LIE+ L+ Sbjct: 301 SNDGRGYVLRRIIRRAIRHGYKLGQKGLFFHRLVTDLVAEMGDAYPELRAKQALIEDELK 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+ +F +TLD+G+ LL+ L KD ++L+G AF+LYDT+G PLD+ DI R L Sbjct: 361 KEEIKFAETLDKGMALLEEAL----KDGVQVLDGKTAFQLYDTYGFPLDLTADICRERDL 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F+ A+E QR+++RA S T K+ L+ T+F GY ++ Sbjct: 417 Q-VDQDGFDAAMEAQRAQSRAAS-------TFKMGGKLEYAGDDTRFEGY-----AESTA 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 E R + A+ + G+ V+ +G VV D+TPFYAE GGQ+GD Sbjct: 464 EGR------------------ILALYKDGQPVDTLSAGDSGVVVLDRTPFYAEGGGQIGD 505 Query: 531 TGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 TG G + D QK F H + RG L+T M++V TID RR + NH Sbjct: 506 TGTLAATGGLDALFDVLDTQKVTAAAFGHEGRLVRGQLKTGMTVVATIDLHRRRAIQRNH 565 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 S THL+H AL +LG HV+Q GS +T + RFD +H +P+++ ++ IE VN +I N Sbjct: 566 SVTHLMHAALRDVLGKHVTQKGSLVTAERTRFDFSHHEPVSAEQMAEIERIVNFVIGANY 625 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V R+M+ +DA GA AL G KY D VRV+ + G S+ LCGGTHVS TG+I Sbjct: 626 DVSARLMSMDDAQKLGAMALFGEKYGDVVRVLKM-----GDFSTELCGGTHVSRTGDIGF 680 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766 IVSE + AG+RRIEA+TG+ A +++ QD+ ++ LK S V R+ + ++ Sbjct: 681 FKIVSEGGVAAGVRRIEAVTGEGAVAYVQSQDKLVRDACHMLKAQSHEEVAERIAALQDQ 740 Query: 767 YRKLQLIHAKRKLQLNV---EDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820 + L A+ K +L E+L+ + VN + +E+ D+ L+ MD L+ ++ Sbjct: 741 LKGLDKEVARLKGKLAASAGEELAASAVT-VNGARLLAAELEGADAATLRDTMDKLKDRL 799 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 QS +I+L + K + VT+DL + A +L A + GG GGG+P +A +GG Sbjct: 800 QSAVIVLAS-KADGKVQLAAGVTKDLTGKVKAGELVNFVAGQV-GGKGGGKPDIAMAGGS 857 Query: 881 NGNKADQAIAGVASFL 896 K +A+A V ++ Sbjct: 858 EPEKLAEALASVQGWV 873 >gi|310823694|ref|YP_003956052.1| alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] gi|309396766|gb|ADO74225.1| Alanyl-tRNA synthetase [Stigmatella aurantiaca DW4/3-1] Length = 897 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/911 (41%), Positives = 547/911 (60%), Gaps = 56/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL+FF+ GH + SS L+P NDPTL+FTN+GMV FK++FTG+EK Y T Sbjct: 6 TASQIREAFLQFFEARGHRRVASSPLVPQNDPTLLFTNAGMVQFKDVFTGREKRDYSRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 66 TSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKAEAIAYAWEFVTRTLGLPI 125 Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL +TV++ D EAF+LW + G+ D+I+++ DNFW+M +TGPCGPCSEI Sbjct: 126 ERLAVTVFNGEQGVPWDAEAFELWAQ-QGVPRDRILKLGYKDNFWAMGDTGPCGPCSEIH 184 Query: 177 FDQGECIP-----GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228 + QG+ IP G P G + + +R++EIWNLVFMQFE++ K I LPK SIDTG Sbjct: 185 YHQGDDIPCSEAAAGRPCQGVACDCDRWLEIWNLVFMQFERKEKDAPLIPLPKPSIDTGA 244 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+A+V+Q K +NYD DLF+ ++ ++ G Y + RVI DH R+++FLI+D Sbjct: 245 GLERIASVVQGKRSNYDTDLFQGILGTVSELVGKPYTQEGGASMRVIADHSRAAAFLISD 304 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+NEGRGYVLRRIMRRA+ + LLG + ++ + M AYPEL + + + Sbjct: 305 GVQPSNEGRGYVLRRIMRRAIRHGSLLGLEDVFFFKVVDRVIGLMSDAYPELREGRTFVL 364 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E R E+E F +TLDRG+ L+D ++ L + + L+G F L+ T+G P D+ Q IL Sbjct: 365 EVCRHEEETFRRTLDRGMKLIDEGIAKLKQAGETKLSGAEVFYLHGTYGFPWDLTQIILR 424 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 RG D+ F + +E++ + + G G ++ +L E+ G ++F+GY+ Sbjct: 425 ERGFDA-DLDGFWKEMEKEADKNKFG--GSGEKAISTVYQTLAERLGTSEFLGYEGEGHE 481 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 V+AI++ G V +A +G+ VE+V D+TPFY E+GG Sbjct: 482 GEGS---------------------VRAILKDGHEVGQASAGETVELVLDRTPFYGESGG 520 Query: 527 QLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 Q GDTG G G + Q+TDVQ+ G+ VHH V+ G +T + +D Q R+ + Sbjct: 521 QQGDTGQITGHGGKAVAQVTDVQRPVPGLIVHHVQVKEGTFQTGEMVQAGVDNQRRKSIR 580 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV Q GS + PD LRFD +H T +L+ +ED VN + Sbjct: 581 ANHSATHLLHKALKMVLGDHVKQAGSVVAPDFLRFDFSHFSVPTPEQLEQVEDIVNTWVR 640 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +N TR+M ++A SGA A+ G KY + VRVV+V + S+ LCGGTHV +G+ Sbjct: 641 ENTEAQTRVMKLDEAKKSGAVAMFGEKYGETVRVVTVHPQ-----STELCGGTHVRRSGD 695 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE--- 761 I L I+SE I +G+RRI A+TG A +L + +L+ A LK S + RVE Sbjct: 696 IGLFKILSEGGIASGVRRITAVTGLGALQYLRETERELRKAADLLKTSPKELSKRVEATQ 755 Query: 762 -EIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 + E RK++ + K + N + L ++ + ++ + D K + + D L+ + Sbjct: 756 KRVKELERKVEEVAVKAQTASNKDVLEQAREVNGMKVLAIRVDPADDKIYRGLADQLRDR 815 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 I+SG++ +G K+ KA +L+ VT+D++++ +A L R AK + GG GGG+ MAQ+G Sbjct: 816 IRSGVVA-IGGEKDGKALILVAVTKDVVEKGISAGALVREMAKEV-GGKGGGKADMAQAG 873 Query: 879 GPNGNKADQAI 889 GP+ +K A+ Sbjct: 874 GPDASKLPAAL 884 >gi|205830264|sp|A9M198|SYA_NEIM0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 874 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/914 (41%), Positives = 538/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY + VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELAKAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFL 896 K + + V S+L Sbjct: 856 GKLPEMLVSVESWL 869 >gi|304316715|ref|YP_003851860.1| alanyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778217|gb|ADL68776.1| alanyl-tRNA synthetase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 879 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/900 (41%), Positives = 563/900 (62%), Gaps = 54/900 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+ GH LPS SL+P ND +L+ N+GM P K FTG+E P + VTT Sbjct: 6 MNEIREKYLSFFESKGHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGKEIPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++ VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +TK +L + Sbjct: 66 CQKCIRTP----DIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTKVLELPED 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++T+Y+ D+EA+ +W K+ GL ++I+R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 122 RLWVTIYENDDEAYDIWNKVVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R+IE WNLVF QF++ ++ LPK +IDTGMGLERMAT++Q Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFDKDSEGNYNSLPKPNIDTGMGLERMATIMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D+ + + ++ G+KY + N V+ RVI DH+R +F+I+DGILP+NEGRGY Sbjct: 241 SIFDVDVIRGITDYVGEMAGVKYGDDKKNDVSLRVITDHIRGVTFMISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA Y +LLG +P + +++ + AYPELI+ K I++ ++ E+ERF Sbjct: 301 VLRRILRRAARYGKLLGLDKPFLHNVVDVVVEHYSGAYPELIERKDYIKKVIKKEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D+GL +LD ++ L + +L G+ AFKLYDT+G P+++ ++IL G+ +D + Sbjct: 361 ETIDQGLGILDEYINDLRSEGKTVLEGNKAFKLYDTYGFPIELTKEILNESGMT-VDEVE 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 + + LE+QR RAR+ + + I+ +LK+ T+F+GYD + K D KVL Sbjct: 420 YQKELEKQRLRARSSRKEDNALWEKDIYSTLKDI--ETKFVGYDSV------KSDAKVL- 470 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 AI++ E+V+ A +G++V V+ D TPFYAE+GGQ+GD G + Sbjct: 471 ----------------AIIKDNELVDSAEAGEEVNVILDMTPFYAESGGQVGDKGVIKNE 514 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + I D +K FVH VERGIL ++ ID +NR + NH+ATHLLH AL Sbjct: 515 DVFVNIKDCKKAGGNKFVHIGTVERGILSVGDTVEALIDEKNRLSTARNHTATHLLHSAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +G HV Q GS +TP+ LRFD TH + +T E+K+IE+ VN+ I +N+ V IM+ + Sbjct: 575 RKFIGDHVHQAGSLVTPERLRFDFTHYQALTDEEIKTIENEVNEKIYENIDVSVDIMSHD 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A+ GA AL KY D VRVV+V +S LCGGTHV +TG I + I+SES + Sbjct: 635 EALKKGAMALFQEKYGDVVRVVNV-----SDYSKELCGGTHVDNTGNIGVFKIISESGVA 689 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQLIH 774 AGIRRIEA+TG A ++ ++E + ++ LKV++ ++V RV + ++Y K Q+ Sbjct: 690 AGIRRIEAVTGINAVKYMNEKEEIIANIGQILKVNEKDIVNRVTGMSQTIKDYEK-QIEQ 748 Query: 775 AKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K K+ + + + D N F+S ++++ D ELK + D L+ K++S +++ I Sbjct: 749 LKSKIVSSTSERLINLAVDFNGVKFISAVLNDFDVDELKMMGDILKDKLKSAVLVFATI- 807 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + + + T+D++ +F +++ + +V + GG GGGRP MAQ G N +K + A+ Sbjct: 808 RNGKINFVGMATKDVV-KF-GINVGTIIKEVCQIAGGKGGGRPDMAQGVGNNLDKVNDAL 865 >gi|218768564|ref|YP_002343076.1| alanyl-tRNA synthetase [Neisseria meningitidis Z2491] gi|20532265|sp|Q9JTG4|SYA_NEIMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|121052572|emb|CAM08912.1| alanyl-tRNA synthetase [Neisseria meningitidis Z2491] Length = 874 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/914 (41%), Positives = 538/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY + VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFL 896 K + + V S+L Sbjct: 856 GKLPEMLVSVESWL 869 >gi|161870450|ref|YP_001599622.1| alanyl-tRNA synthetase [Neisseria meningitidis 053442] gi|161596003|gb|ABX73663.1| alanyl-tRNA synthetase [Neisseria meningitidis 053442] Length = 885 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/914 (41%), Positives = 538/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 14 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 74 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +VI DH+RS SFLIADG+LP+ Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 312 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 372 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + + Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 473 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 520 IFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 580 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY + VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 640 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 755 ELAKAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866 Query: 883 NKADQAIAGVASFL 896 K + + V S+L Sbjct: 867 GKLPEMLVSVESWL 880 >gi|294339360|emb|CAZ87716.1| alanyl-tRNA synthetase [Thiomonas sp. 3As] Length = 917 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/952 (40%), Positives = 541/952 (56%), Gaps = 96/952 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 NVS IR FL +F+ G + SSSL+P NDPTL+FTNSGMV FK++F GQ++ Y+ T Sbjct: 2 NVSDIREKFLAYFESQGSTRVASSSLVPGNDPTLLFTNSGMVQFKDVFLGQDQRPYKRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT + L Sbjct: 62 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIRYAWELLTTVYKLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA +W K G+ ++IIRI N DNFW MA+TGPCGPCSEI Sbjct: 122 EKLWVTVYAEDDEAHDIWAKEVGVPVERIIRIGDNKGARYASDNFWQMADTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNK-QERF---------------- 217 F+D G I GG PGS EE G+RYIEIWNLVFMQFE+ +ERF Sbjct: 182 FYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERYAAGEERFDTEDQATARKQAVEAE 241 Query: 218 ---------------------ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256 LPK +DTGMGLER+A VLQ +NY+IDLF+ LI+A+ Sbjct: 242 GGIGLVSKDGEGYKLAVFRQKPLPKPCVDTGMGLERIAAVLQHVHSNYEIDLFQALIKAA 301 Query: 257 EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316 + T G+ + +VI DH+R+ +FLI DG++P NEGRGYVLRRI RRA+ + LG Sbjct: 302 ARETATADLGH--ASLKVIADHIRACAFLIVDGVIPGNEGRGYVLRRINRRAIRHGYKLG 359 Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376 +P ++P L +MG+AYPEL + + + E L++E+ RF +T++ G+ +LD L+ L Sbjct: 360 VRQPFFYKMVPDLVAQMGAAYPELAEVQGRVAEVLQAEEARFFETIEHGMGVLDTELAAL 419 Query: 377 --GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434 +L G++AFKL+DT G PLD+ QD+ G+ +D +F+ A+ QR +ARA Sbjct: 420 RAAGGNLLAGELAFKLHDTFGFPLDLTQDVCREHGMK-VDEAAFDAAMARQREQARA--- 475 Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494 K+ +L T+F GY+ L +KE R V A Sbjct: 476 ----AGKFKMQAALDYVGDKTRFDGYEHL----LVKEARVV------------------A 509 Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDG--IRLQITDVQKKAE 551 + + G V +G VV D+TPFYAE+GGQ+GD+G GD +R + D QK Sbjct: 510 LYKDGTSVPTLQAGDPGVVVLDRTPFYAESGGQVGDSGVLFEGDSCELRFVVHDTQKLQA 569 Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611 +F HH +E G L+ + +D + R+ + NHS THL+H AL +LG HV Q GS Sbjct: 570 DVFGHHGTLESGSLKVGEIVAAQVDGERRQAVMRNHSVTHLMHKALRLVLGDHVQQKGSL 629 Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671 + D RFD H P++ E+ +E VN+ I N R+M ++A GA L G K Sbjct: 630 VDADKTRFDFAHDAPMSDDEIARVERLVNEEILANAATQARVMPIDEAKGLGAMMLFGEK 689 Query: 672 YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 Y D VRV+ + S LCGGTHV+ TG+I L IV E + AGIRR+EAITG A Sbjct: 690 YGDTVRVLDIGT------SRELCGGTHVARTGDIGLFKIVFEGGVAAGIRRVEAITGLNA 743 Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-- 789 + + Q+ + L+ LK +VE++ E+ R+L+ A+ K Q Sbjct: 744 LAFVQKQNALVARLSRTLKAPAEESAAKVEQLLEQQRQLEKDLAQLKAQQAAAQGDALVS 803 Query: 790 ---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846 I + + + +D+K L+ +D ++ K+++ +++L+ + K + V+ D Sbjct: 804 QAITIGGTSVLLARMDGLDAKGLREAVDRIKSKLKT-VVVLLASREGDKVQLAAGVSADR 862 Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + + A DL +A+ + GG GGGRP A +GG + D A+A S L++ Sbjct: 863 VGQIKAGDLVSAAAQAV-GGKGGGRPDFAMAGGTQPEQIDAALAQAKSLLQQ 913 >gi|319410810|emb|CBY91198.1| alanyl-tRNA synthetase [Neisseria meningitidis WUE 2594] Length = 885 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/914 (41%), Positives = 538/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 14 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 74 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYVSDNFWQMGDTGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +VI DH+RS SFLIADG+LP+ Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 312 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 372 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + + Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 430 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 473 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 520 IFSSENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 580 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY + VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 640 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866 Query: 883 NKADQAIAGVASFL 896 K + + V S+L Sbjct: 867 GKLPEMLVSVESWL 880 >gi|71066015|ref|YP_264742.1| alanyl-tRNA synthetase [Psychrobacter arcticus 273-4] gi|83305857|sp|Q4FRQ0|SYA_PSYA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71039000|gb|AAZ19308.1| alanyl-tRNA synthetase [Psychrobacter arcticus 273-4] Length = 890 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/914 (41%), Positives = 541/914 (59%), Gaps = 58/914 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F++FF H + SSSLIP NDPTL+FTN+GM FK F G E Y T Sbjct: 8 ADIRQAFIDFFISKQHTPVASSSLIPHNDPTLLFTNAGMNQFKETFLGMEPRDYTRAVTS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ I W+ LT + +D+ Sbjct: 68 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKQAGIGYIWEFLTSDEWLAIDK 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+T+Y+ D+EAF +W K G+ +++IIRI N DNFW+M +TGPCGPC+E+ Sbjct: 128 NRLYVTIYETDDEAFDIWHKDIGIPSERIIRIGDNKGAPYASDNFWTMGDTGPCGPCTEV 187 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GGLPG+ EE G+RYIEIWN VFMQF +Q LP S+DTGMGLER++ Sbjct: 188 FYDHGADIEGGLPGTPEEDGDRYIEIWNCVFMQFNRQKDGTMLPLPAPSVDTGMGLERIS 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q NY+IDLF HL+ A+ ++ ++ E + +VI DH+R+ SFLIADG+ P+N Sbjct: 248 AIMQGVHGNYEIDLFVHLMDAAAEI--LEIENQQQSSLKVIADHIRAVSFLIADGVTPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ + LG ++ L EMG AYPEL + +IE T++ E Sbjct: 306 EGRGYVLRRVIRRAVRHGNKLGADSDFFYKMVAPLVAEMGIAYPELKDKQSVIENTIQKE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + +F KTL +GL LL L L + L+G+ AFKLYDT+G P+D+ DI RG+ ID Sbjct: 366 EAQFAKTLAQGLRLLASELEGLQDGDTLSGEAAFKLYDTYGFPVDLTADITRERGIV-ID 424 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F++ ++ QR RAR +G + + S+ + T FIGY+ L Sbjct: 425 EAEFDEHMQAQRERAR------DAGKFDVDYSSVIQVENPTTFIGYEQLE---------- 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-C 533 GV+ + A+ Q G + G + VV D+TPFYAE GGQ+G+ G Sbjct: 469 ----------QEGVA--IDALYQDGNPADSLTEGMEGVVVLDRTPFYAEGGGQVGELGEI 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+ + D +K + I +H+ +V G ++T+ + + R + NHSATHLL Sbjct: 517 RTATGV-FDVQDTKKSGQAI-IHYGVVTMGEIKTKQTADAQVLSSIRAASAKNHSATHLL 574 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG V+Q GS ++ + LRFD ++ KP++ AE+ IE VN+ I N P Sbjct: 575 HAALREVLGDAVTQKGSLVSSEVLRFDFSYDKPVSPAEIMRIERLVNEQIQANTPTRIEN 634 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYE---DGG--VHSSALCGGTHVSSTGEIMLL 708 M ++AI GA AL G KY + VRV+++ + DG S LCGG HV TG+I +L Sbjct: 635 MPIDEAIKQGAMALFGEKYGNDVRVLTMGTDSIVDGQRMPFSIELCGGLHVQRTGDIGVL 694 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SES I AGIRRIEA+T A ++ +++L LAS LKV + V RV + ++ R Sbjct: 695 KITSESGIAAGIRRIEAVTAMNAIKNIQQSEQQLSELASQLKVKRPEVAQRVRTMADKQR 754 Query: 769 KL--QLIHAKRKL----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 L QL ++K+ N+ D IA + + +S VD K ++++MD ++ K+ Sbjct: 755 DLEKQLERLEQKIASAQAANLLD-EVQTIAGIPLLISTLSGVDGKSIRTLMDDIKSKLPD 813 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L+G K+++ ++ V + + DR A D+ R A L GG GGG+P AQ G P Sbjct: 814 SVIVLIG-DKDEQLALAANVAKSVTDRIKAGDIIRYLAGEL-GGKGGGKPDYAQGGAPKS 871 Query: 883 NKADQAIAGVASFL 896 N + IA + +++ Sbjct: 872 NNSAAVIAALPAWV 885 >gi|326575283|gb|EGE25211.1| alanyl-tRNA synthetase [Moraxella catarrhalis CO72] Length = 893 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/903 (41%), Positives = 529/903 (58%), Gaps = 62/903 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 7 NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L + Sbjct: 67 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EI Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GGLPG+ E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q NY+ D+F L+ + + G+ + + N + +V+ DH+RS +FLIADG++P Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ +G+ Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F ++ EQR+RAR +G + +L + AT+F+GY+ L Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I +HH +V+ G + S + Q R + NHSATHL Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVE 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE I AG+RRIEA+TG A ++ D++L LA+ K + + RV ++ ++ R L Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVHYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821 + K+ +LN + S H + ++ + +I ++ +D+K L+++ D ++ K+ Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811 Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 GI++L + E K ++ V + L + A D+ + ++ L GG GGG+P AQ G Sbjct: 812 DGIVILASVYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGG 870 Query: 879 GPN 881 + Sbjct: 871 ATD 873 >gi|289208781|ref|YP_003460847.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. K90mix] gi|288944412|gb|ADC72111.1| alanyl-tRNA synthetase [Thioalkalivibrio sp. K90mix] Length = 869 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/907 (42%), Positives = 549/907 (60%), Gaps = 56/907 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +FLEFF+ +GH ++ SS L+P NDPTL+FTN+GMV FK++F G+EK Y + Sbjct: 4 ADIRRSFLEFFEGHGHTIVSSSPLVPGNDPTLLFTNAGMVQFKDVFLGREKRSYNRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT+ L + Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWQFLTETIGLPPEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITT-----NDNFWSMAETGPCGPCSEIFFDQ 179 L++TVY+ D++A+ +W + A++I+RI +DNFW M +TGPCGPC+E+F+D Sbjct: 124 LWVTVYETDDDAYNVWANEIQVPAERIVRIGDKPDGGSDNFWQMGDTGPCGPCTEVFYDH 183 Query: 180 GECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G + GG PGS E+G+RYIEIWNLVFMQ+++ LP+ S+DTGMGLER+A VLQ Sbjct: 184 GPEVEGGPPGSPDEDGDRYIEIWNLVFMQYDRDADGTLNPLPRPSVDTGMGLERLAAVLQ 243 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NY+IDLF+ LI A+ +VTG K + + + RVI DH+RS +FLI DG+LP+NEGRG Sbjct: 244 GVHSNYEIDLFQDLIAAAARVTGAKEQ--DSASLRVIADHIRSIAFLITDGVLPSNEGRG 301 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA + +G + + ++ L MG A+PEL +A+ +E+ L E+ +F Sbjct: 302 YVLRRIIRRAARHGFKVGAQDAFLYQMVGDLVRVMGEAFPELAEAQARVEQVLEKEERKF 361 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TLD+G+ +L+ L L + +++ G+ F LYDT+G P+D+ DI RGL +D+ F Sbjct: 362 LETLDKGMKILEDDLRDL-EGKVIPGETIFLLYDTYGFPVDLTGDIARERGLE-LDMAGF 419 Query: 419 NQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 A+ +QR+RARA S + G +I T F GY+ + E R Sbjct: 420 ESAMADQRARARAASHFSMDDGGLPQIDLE-------TTFSGYETVD-----DEGR---- 463 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 V A+ Q GE VE G + VV D+TPFY E+GGQ+GD G G Sbjct: 464 --------------VVALYQNGEPVERLEVGAEGLVVLDRTPFYGESGGQVGDVGTLSGS 509 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G+R Q+ D +K+ +H V G L +L ++ R + +HSATHLLH AL Sbjct: 510 GVRFQVADTRKQG-AAHIHVGQVRAGTLEVGQTLQAAVEGPRRENIRRHHSATHLLHKAL 568 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 LG HV Q GS + PD LRFD TH +P+T +L++IE VN I N TR+M+ E Sbjct: 569 RDQLGDHVQQKGSLVDPDRLRFDFTHMEPLTDEQLRAIEAQVNAEILANEATDTRVMDIE 628 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A+ SGA AL G KY D+VRV+ + S LCGGTHV TG+I L I SE + Sbjct: 629 SAMESGAVALFGEKYGDQVRVLKIGT------SVELCGGTHVDRTGDIGLFRITSEGGVA 682 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775 AGIRRIEA+ G+ A + Q L ++A L+ +G +V ++ E R+L Q+ Sbjct: 683 AGIRRIEAVAGEVALRWVDEQLGYLDAIADRLRAGRGEAADKVAQLQERSRELEKQIEQL 742 Query: 776 KRKLQLNV-EDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K KL DL+ ++ V ++ I V+ K L+ ++D L++K+ +++L + Sbjct: 743 KGKLASQAGSDLASQAQEVGGVQVLAAKIDGVEPKALRDMVDQLKQKLGKAVVVLGTATG 802 Query: 833 EKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K S++ VT+ +F A DL ++A+V G GGGRP MA +GG + +K D A+A Sbjct: 803 EGKVSLVAGVTKAETGQFKAGDLVGHVAAQV--DGKGGGRPDMAMAGGQSPDKLDAALAS 860 Query: 892 VASFLKK 898 VA ++++ Sbjct: 861 VADWVRE 867 >gi|261379016|ref|ZP_05983589.1| alanine--tRNA ligase [Neisseria cinerea ATCC 14685] gi|269144550|gb|EEZ70968.1| alanine--tRNA ligase [Neisseria cinerea ATCC 14685] Length = 874 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/915 (41%), Positives = 536/915 (58%), Gaps = 68/915 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVHSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT + Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLSIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V+E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D R NHSATHL+ Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDGIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 569 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVECRVNEAILANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKSLEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL N +DL K+ E D+ L+ ++ L K + Sbjct: 744 DLAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSEQ 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AIVLLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFLK 897 K + + V +++ Sbjct: 856 AKLPEMLGSVEDWVR 870 >gi|326565354|gb|EGE15532.1| alanyl-tRNA synthetase [Moraxella catarrhalis 12P80B1] Length = 893 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/918 (40%), Positives = 536/918 (58%), Gaps = 62/918 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R F++FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + Sbjct: 7 NEVRQAFIDFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L + Sbjct: 67 QKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPK 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RLY+TVY D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EI Sbjct: 127 DRLYVTVYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GGLPG+ E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ Sbjct: 187 FYDHGEHIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERIS 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q NY+ D+F L+ + + G+ + + N + +V+ DH+RS +FLIADG++P Sbjct: 247 AIMQGVHGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIP 306 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + Sbjct: 307 SNEGRGYVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAIL 366 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ +G+ Sbjct: 367 KEEEQFAKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT- 425 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F ++ EQR+RAR +G + +L + AT+F+GY+ L Sbjct: 426 IDEAGFELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------- 472 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G Sbjct: 473 ----------------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D QK + I +HH +V+ G + S + Q R + NHSATHL Sbjct: 517 EISTESGVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHL 575 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P Sbjct: 576 LHAALRTILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVE 635 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYI 710 I++ + A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I Sbjct: 636 ILDIDSAKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKI 695 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE I AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ ++ R L Sbjct: 696 ISEQGISAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHL 755 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQ 821 + K+ +LN + S H + ++ + +I ++ +D+K L+++ D ++ K+ Sbjct: 756 E----KQIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLA 811 Query: 822 SGIIMLVGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 GI++L I E K ++ V + L + A ++ + ++ L GG GGG+P AQ G Sbjct: 812 DGIVILASIYTADGEDKIAMTASVGKHLTGKIKAGNIIKHLSENL-GGKGGGKPDFAQGG 870 Query: 879 GPNGNKADQAIAGVASFL 896 + + + G+ ++ Sbjct: 871 ATDVANLPKLMTGLTDWI 888 >gi|121608636|ref|YP_996443.1| alanyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2] gi|205830282|sp|A1WIG8|SYA_VEREI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|121553276|gb|ABM57425.1| alanyl-tRNA synthetase [Verminephrobacter eiseniae EF01-2] Length = 872 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/907 (41%), Positives = 525/907 (57%), Gaps = 56/907 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR +FL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 5 SVADIRKSFLDFFVAKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYSRAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK ++Q AW+LLT+ + L Sbjct: 65 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLQWAWELLTEVYRLPA 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL TVY +D+EA+ +W + GL +++IRI N DNFW MA+TGPCGPCSEI Sbjct: 125 ERLLATVYQDDDEAYDIWTREIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 184 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G E+G+R+IEIWN VFMQF LP +DTGMGLER+A Sbjct: 185 FYDHGPGIPGGPPGSPDEDGDRFIEIWNNVFMQFNMAADGSVTPLPAPCVDTGMGLERLA 244 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ+ +NY+IDLF+ LI A+ + TG K G+ + RVI DH+R+S+FL++DG+LP + Sbjct: 245 AVLQQVHSNYEIDLFEQLIAAASRETGEKDLGHKSL--RVIADHIRASAFLVSDGVLPGS 302 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRIMRRA+ + LG P + L+ L MG+AYP L + I + L++E Sbjct: 303 EGRGYVQRRIMRRAIRHGYQLGQRAPFLHRLVADLVRLMGAAYPSLRAQQQRIADILKAE 362 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L G ++L GDVAFKL+DT+G PLD+ D+ RG+A +D Sbjct: 363 EERFFETLAHGMEILDAALD--GGAKLLPGDVAFKLHDTYGFPLDLSADMCRERGVA-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F+ A+E Q+++ARA G E+ +L+ GA++F GY+ L G Sbjct: 420 EAGFHLAMERQKTQARA----AGKFKMER---ALEYTGGASRFTGYEDLAG--------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ + AI G V +GQ +V D+TPFYAE+GGQ+GD G Sbjct: 464 --------------TAKITAIYAAGTSVAALKTGQHGVLVLDRTPFYAESGGQVGDQGLI 509 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 R + D K + HH +E G L ++ ++ R NHSATHL+H Sbjct: 510 SSGSARFAVDDTLKIKADVHGHHGRLEDGTLNVGDTVQARVNTALRAATMRNHSATHLMH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + + RFD H+ ++SAEL+ IE VN+ I N P R+M Sbjct: 570 QALRAVLGSHVQQKGSLVNAERTRFDFAHNAAVSSAELREIERRVNEEILANQPTQARVM 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +SGA L KY VRV+ + S LC GTHV TG+I L +V+E Sbjct: 630 DIEAARSSGAMMLFDEKYGAAVRVLDIG------SSRELCAGTHVQRTGDIGLFKVVAEG 683 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 + AG+RRIEA+TG A + L ++ + A L+ + GR+ + + R L+ Sbjct: 684 GVAAGVRRIEAVTGSHALAWLQQLEDTVNQAADTLRAPVAELNGRISQALDNARALEKEV 743 Query: 775 AKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K +L +I + ++ + D+K L++ MD L+ ++++ I+L Sbjct: 744 AALKSRLAASQGQELLARAVQIKGLAVLAATLPGADAKTLRATMDQLKDQLKTAAIVLAA 803 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT D + R A DL A+ + GG GGG+P MA +GG + A+ Sbjct: 804 VDGD-KVQLAAGVTADSVGRIQAGDLVNFVARQV-GGKGGGKPDMAMAGGTDAAGLPAAL 861 Query: 890 AGVASFL 896 A VA ++ Sbjct: 862 ASVAGWV 868 >gi|241759977|ref|ZP_04758075.1| alanine--tRNA ligase [Neisseria flavescens SK114] gi|241319431|gb|EER55861.1| alanine--tRNA ligase [Neisseria flavescens SK114] Length = 874 Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/914 (41%), Positives = 536/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TTELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ K L+G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALAKGSKK--LDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G + VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDEGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFAGENRFEVHDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 569 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL N +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFL 896 K + + V ++ Sbjct: 856 AKLPEVLNSVKDWV 869 >gi|308389728|gb|ADO32048.1| alanyl-tRNA synthetase [Neisseria meningitidis alpha710] Length = 885 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/914 (41%), Positives = 537/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 14 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 74 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 194 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +VI DH+RS SFLIADG+LP+ Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 312 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVTDLVKEMGDAYPELKEKQAQIEEALKN 372 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + + Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 429 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 430 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 473 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 520 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 580 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 639 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 640 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 809 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866 Query: 883 NKADQAIAGVASFL 896 +K + V ++ Sbjct: 867 DKLPAVLDSVKDWV 880 >gi|325130665|gb|EGC53406.1| alanyl-tRNA synthetase [Neisseria meningitidis OX99.30304] Length = 874 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/902 (42%), Positives = 533/902 (59%), Gaps = 68/902 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMDE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVTDLVKEMGDAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 569 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NK 884 +K Sbjct: 856 DK 857 >gi|239816150|ref|YP_002945060.1| alanyl-tRNA synthetase [Variovorax paradoxus S110] gi|239802727|gb|ACS19794.1| alanyl-tRNA synthetase [Variovorax paradoxus S110] Length = 874 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/874 (41%), Positives = 518/874 (59%), Gaps = 59/874 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR TFL+FF GH ++ SSSL+P NDPTLMFTNSGMV FK++F G++K Y Sbjct: 7 TVADIRKTFLDFFASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYVRAA 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK ++ A++LLTK + L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLTWAFELLTKVYKLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY ED+EA+ +W K GL ++++RI N DNFW MA+TGPCGPCSEI Sbjct: 127 EKLWATVYIEDDEAYDIWTKDIGLPPERVVRIGDNKGGRYMSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D E G E+G+RYIEIWN VFMQF+ Q LP +DTGMGLER+A Sbjct: 187 FYDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFDMQPDGSVKKLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+ID+F LI+A+ + TG K GNN + +VI DH+R++SFL+ADG++P+N Sbjct: 247 AILQHVHSNYEIDIFDALIKAAARETGEKDLGNNSL--KVIADHIRATSFLVADGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG +P L+P L MG AYP+L+ + I ETL++E Sbjct: 305 EGRGYVQRRIVRRAIRHGYKLGQKKPFFHKLVPDLVKLMGEAYPKLVADEKRITETLKAE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G L G+VAFKL+DT+G PLD+ D+ RG++ +D Sbjct: 365 EERFFETLANGMEILDAALA--GDARTLPGEVAFKLHDTYGFPLDLSADVCRERGVS-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ--FIGYDLLRGSKFMKED 472 FN A+E+Q++ RA K +YG F GY+ L +E+ Sbjct: 422 EAGFNAAMEKQKAAGRAAG---------KFKMDRNVEYGGAGNVFTGYEHL------EEN 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ +G V++ GQ VV D TPFY+E+GGQ+GD G Sbjct: 467 AKVV-----------------ALYFEGAAVQQLKEGQPGIVVLDTTPFYSESGGQVGDQG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + +G++ + D QK +F HH +G L+ ++ +D R NHS THL Sbjct: 510 VLVAEGVQFGVDDTQKIKADVFGHHGTQTQGTLKVGDTVKAAVDTARRAATMRNHSVTHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV Q GS + D RFD H+ +T ++ IE VN I N R Sbjct: 570 MHKALREVLGAHVQQKGSLVDADKTRFDFAHNAAVTHDQILEIEKRVNAEILANTETHAR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A +GA L G KY + VRV+ + S LCGGTHV TG+I L IVS Sbjct: 630 VMDMESAQKTGAMMLFGEKYGESVRVLDIG------SSRELCGGTHVGRTGDIGLFKIVS 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 E + AG+RRIEA+TG A +L + ++S+A+ LK + GR+ ++ E+ R L Sbjct: 684 EGGVAAGVRRIEAVTGANALGYLQELEATVQSVAATLKSPAAELQGRLVQVLEQVRALER 743 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827 ++ K KL + D + DVN + + +++ D+K L+ MD L+ K+++ +++L Sbjct: 744 EVGSLKGKLASSKGDELLAQAVDVNGIKVLAAKLDGADAKTLRDTMDKLKDKLKTAVVVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 + K V VT D + + A +L A+ Sbjct: 804 AAVDG-AKVQVAAGVTSDTVGKVKAGELVNFVAQ 836 >gi|303245636|ref|ZP_07331919.1| alanyl-tRNA synthetase [Desulfovibrio fructosovorans JJ] gi|302492899|gb|EFL52764.1| alanyl-tRNA synthetase [Desulfovibrio fructosovorans JJ] Length = 880 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/908 (42%), Positives = 526/908 (57%), Gaps = 50/908 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR FL+FF GH+ + SS LIP DP+L+FTN+GMV FK +F GQ+KP Y+ Sbjct: 1 MMTAHEIRAKFLDFFAAQGHQKVASSPLIPREDPSLLFTNAGMVQFKKVFLGQDKPGYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW LT+ L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIRFAWTFLTEVIGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY TVY +D+EAF LW+K++GLS D+I R+ DNFWSM +TGPCGPCSEI +D+G Sbjct: 121 DKSRLYATVYQDDDEAFGLWQKVAGLSPDRIYRLGEKDNFWSMGDTGPCGPCSEIMYDRG 180 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E C P G+ + +RY+EIWNLVFMQ++Q ER LP+ SIDTGMGLER+A V+ Sbjct: 181 EEVSCGPDCGIGTC-DCDRYLEIWNLVFMQYDQLESGERVALPRPSIDTGMGLERIAAVV 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295 Q +N+DIDLF+ +I + + G+ Y + + RVI DH R+ +FL+ADG++P+NE Sbjct: 240 QGVHSNFDIDLFQTIIATAASIAGVTYGATDEQDTALRVIADHSRAVAFLVADGVMPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + +L+G ++P + + MG AYPEL+ + +E +R E+ Sbjct: 300 GRGYVLRRLIRRALRFGKLIGLSDPFLFKTAGTVVEVMGDAYPELVATRDFMERMVREEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERFG TLD+GL +L L + ++ + G AFKLYDT+G PLDI+ D+ RG+ Sbjct: 360 ERFGVTLDKGLAILAEELDRMEAAGEKTITGQFAFKLYDTYGFPLDIVNDVAGKRGIT-T 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D + + EQ++RA+ G G ++ L E ++F+GY+ L Sbjct: 419 DEDGYKACMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFVGYETLTAQ------- 471 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S + I +G+ VE +G+ V TPFY E+GGQ GD G Sbjct: 472 ---------------SRVNALISAEGQAVERLTAGETGYAVCAVTPFYGESGGQAGDVGA 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +T K + HH + G + + L +D R + NH+ THLL Sbjct: 517 ITTLTGNATVTGTIKAGPELTAHHITIAAGEILLDQEADLAVDTAVRAATARNHTCTHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LGSHV+Q GS +TPD LRFD TH +T EL +ED VN I + PV T + Sbjct: 577 HKALKNVLGSHVNQAGSLVTPDRLRFDFTHIAAMTPDELSRVEDEVNAAILLDAPVTTEV 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRVV V GV S CGGTH+S+TG+ I++E Sbjct: 637 LPLEAARAKGATALFGEKYGDTVRVVEVP----GV-SMEFCGGTHLSATGQAGSFLILAE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG RRIEA TG H+ +L K G + GR++++ ++ R L Sbjct: 692 SGVAAGTRRIEAATGLNTIKHVREMRGELDESLHAAKAKAGELPGRIKKLQDDIRAL--- 748 Query: 774 HAKRKLQLNVE-------DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K K QL + DL +I V + + + K L+ MD L+ K+ SG+ Sbjct: 749 -TKEKEQLAAKLASGQGRDLLSGLEEIGGVKVLCAKVDAPNIKALREAMDDLRSKVPSGV 807 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + K S+++ V++DL RF A L + A GG GGGRP MAQ+GG N Sbjct: 808 VAIAAEQDGGKVSLIVAVSKDLHGRFTAPALIK-EAAAAVGGSGGGRPDMAQAGGTNPAG 866 Query: 885 ADQAIAGV 892 ++A A V Sbjct: 867 IEEAFAKV 874 >gi|225075679|ref|ZP_03718878.1| hypothetical protein NEIFLAOT_00695 [Neisseria flavescens NRL30031/H210] gi|224952950|gb|EEG34159.1| hypothetical protein NEIFLAOT_00695 [Neisseria flavescens NRL30031/H210] Length = 874 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/914 (42%), Positives = 535/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TTELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LPA Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPA 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNI-DL 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN+ +E QR+RARA + K L T+F GY +R Sbjct: 419 DEEGFNREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGSAKLV------AAQIEADAAALREIVTDLTGKSEQ 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AIVLLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDV 855 Query: 883 NKADQAIAGVASFL 896 K I V ++ Sbjct: 856 EKLPAMIESVKDWV 869 >gi|325128607|gb|EGC51476.1| alanyl-tRNA synthetase [Neisseria meningitidis N1568] Length = 874 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/902 (42%), Positives = 530/902 (58%), Gaps = 68/902 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TTELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LPA Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPA 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSEQ 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AIVLLAAVN-EGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NK 884 K Sbjct: 856 GK 857 >gi|119899070|ref|YP_934283.1| alanyl-tRNA synthetase [Azoarcus sp. BH72] gi|205829981|sp|A1K991|SYA_AZOSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119671483|emb|CAL95396.1| AlaS protein [Azoarcus sp. BH72] Length = 885 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/917 (41%), Positives = 534/917 (58%), Gaps = 64/917 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y TT Sbjct: 4 AEIRAKFLKFFESKGHQIVASSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYSRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L + + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWELLTEVFKLPKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ A+++IRI N DNFW M +TGPCGPC+EIF+ Sbjct: 124 LWVTVYAEDDEAYDIWTKEVGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS EE G+RYIEIWN VFMQF + + LPK S+DTGMGLER++ V Sbjct: 184 DHGPHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERISAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG-----MKYEGNNIVN-----HRVIVDHLRSSSFLI 286 LQ NY+IDLFK LI ++ + G ++ +++ N ++V+ DH+R+ SFLI Sbjct: 244 LQGVHANYEIDLFKSLISSAMRAVGTAEALVERARDSMTNTISPSYKVLADHIRACSFLI 303 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG++P NEGRGYVLRRI+RRA+ + LG ++P L EMG AYPEL + Sbjct: 304 ADGVIPGNEGRGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGEAYPELKAGERR 363 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 + + LR E+ERF T++ G+ +++G L+ + + + NGD AFKL+DT+G PLD+ DI Sbjct: 364 VADVLRQEEERFFATIENGMAIVEGELAAMATAGNTVFNGDTAFKLHDTYGFPLDLTADI 423 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 C +D +F+ A+ Q+ +ARA K+ +L AT F GYD L Sbjct: 424 -CREREVTVDAAAFDAAMARQKEQARAAG-------KFKMAANLDYDGPATTFHGYDKLE 475 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + A+ + G V E V G VV D TPFYAE+ Sbjct: 476 -----------------------AKGNILALYKDGVAVNELVEGDLGVVVLDHTPFYAES 512 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ GD G G + D K +F HH +V+ G L + +D R + Sbjct: 513 GGQAGDRGELKGAAGIFGVEDTLKIQASVFGHHGVVKTGKLAVGQGVAARVDTAARAATA 572 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHS THL+H AL +LG HV Q GS + PD RFD H+ P+++ E++ +E+ VN I Sbjct: 573 RNHSVTHLMHKALREVLGPHVQQKGSLVDPDKTRFDFAHTAPMSAEEIREVEEIVNREIL 632 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N +M +DA SGA L G KY D VRV+S+ S LCGGTHV+ TG+ Sbjct: 633 ANAATEAAVMALDDAQKSGAMMLFGEKYGDEVRVLSIG------SSKELCGGTHVARTGD 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L IV E + AG+RR+EA+TG+ A + Q+ +++ +++ LKV V RV I Sbjct: 687 IGLFKIVVEGGVAAGVRRVEAVTGENALRYTQEQERRVQGVSALLKVQPDEVAERVAGIL 746 Query: 765 EEYRKLQLIHAKRKLQLNV---EDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKK 819 + R L+ A+ K +L EDL + ++ + D L+ MD L+ K Sbjct: 747 DNVRALEKELARLKSKLAASQGEDLVAQAVDVGGAKLLAATLEGADVPTLRETMDKLKDK 806 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 ++S I+L ++ + K S++ VT DL + A +L A+ + GG GGGRP MAQ+GG Sbjct: 807 LKSAAIVLASVA-DGKVSLIAGVTADLTGKVKAGELVNFVAQQV-GGKGGGRPDMAQAGG 864 Query: 880 PNGNKADQAIAGVASFL 896 +K A+A V +++ Sbjct: 865 TEPDKLPAALAAVQAWV 881 >gi|253997271|ref|YP_003049335.1| alanyl-tRNA synthetase [Methylotenera mobilis JLW8] gi|253983950|gb|ACT48808.1| alanyl-tRNA synthetase [Methylotenera mobilis JLW8] Length = 878 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/903 (42%), Positives = 532/903 (58%), Gaps = 56/903 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF GHE++ SSSL+P DPTL+FTN+GM FK++F G +K Y T+ QK Sbjct: 14 IRQAFLDFFASKGHEIVSSSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRATSSQK 73 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+ AW+LLT+ F L + +L Sbjct: 74 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEDAIKYAWELLTEVFKLPKDKLT 133 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179 +TVY ED+EA+ +W I G+ A++IIRI N DNFW M +TGPCGPC+EIF+D Sbjct: 134 VTVYAEDDEAYAIWNNIIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFYDH 193 Query: 180 GECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G GG PGS E+G+RYIEIWN VFMQF + LPK S+DTGMGLER++ VLQ Sbjct: 194 GAHHFGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERISAVLQ 253 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NY+IDLF+ LI A+ + T K +I + +V+ DH+R+ SFLIADG++ NEGRG Sbjct: 254 HVHANYEIDLFQTLIAAAARET--KTADLSIPSLKVLADHIRACSFLIADGVIAGNEGRG 311 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LG ++P L EMG AYPEL+ + I E L+ E++RF Sbjct: 312 YVLRRIIRRAIRHGYKLGVRSAFFHKIVPDLVAEMGDAYPELVSNQARITEILKQEEDRF 371 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +T++ G+ +L+ L+ ++ NG+ AFKL+DT+G PLD+ DI R +A +D +F Sbjct: 372 FETIENGMAILESELA--STKDVFNGETAFKLHDTYGFPLDLTADICRERNVA-VDTDAF 428 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 N A+ Q+ +ARA K+ +L+ AT F GYD L Sbjct: 429 NAAMARQKEQARA-------AGKFKMTANLEYDGVATNFHGYDKLE-------------- 467 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S+ V A+ + G V + G+ VV D TPFYAE+GGQ+GD G G Sbjct: 468 ---------TSATVTALYKDGVAVTKLTEGEVGVVVLDNTPFYAESGGQIGDCGELRGTN 518 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + D QK +F HH +++ G L + ++ Q R NHSATHL+H AL Sbjct: 519 GIFEAEDTQKIQATVFGHHGVLKTGTLSVGEQVSARVNTQARTNTMRNHSATHLMHKALR 578 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS + D RFD H+ P+T E+ +E VN I N R+M+ E Sbjct: 579 EVLGEHVQQKGSLVDTDKTRFDFVHTAPMTDDEIAKVEQIVNAEILANAACQARVMDIES 638 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A +GA L G KY D VRV+ + S LCGGTHV+ TG+I L I SES + A Sbjct: 639 AQNTGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVNRTGDIGLFKITSESGVAA 692 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RR+EA TG+ A + Q + +LA+ LK + +V ++ + + L+ A+ K Sbjct: 693 GVRRVEATTGEGALKLINAQQTLISALANDLKAPVNELASKVAQLSDHAKSLEKELARLK 752 Query: 779 LQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +L +DL+ +IA V ++ + D+ L+ MD L+ K++S I+L +S + Sbjct: 753 SKLASSQGDDLATQAVEIAGVKVLAATLDGADANALRETMDKLKDKLKSAAIVLASVS-D 811 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K S+ VT DL + A +L A + GG GGG+P MA +GG + ++ QA+A V Sbjct: 812 GKVSLAAGVTADLTSKVKAGELVNFVAGQV-GGKGGGKPDMAMAGGSDASQLPQALASVN 870 Query: 894 SFL 896 ++ Sbjct: 871 DWV 873 >gi|313668028|ref|YP_004048312.1| alanyl-tRNA synthetase [Neisseria lactamica ST-640] gi|313005490|emb|CBN86926.1| alanyl-tRNA synthetase [Neisseria lactamica 020-06] Length = 874 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/902 (42%), Positives = 531/902 (58%), Gaps = 68/902 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF++L++A + TG + + +VI DH+RS SFLIADG+LPA Sbjct: 243 AAVMQHVHSNYEIDLFQNLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPA 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L + T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYEGQDTEFKGYS----------ER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TEATVLALYKNGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGEHVEQKGSLVTAESTRFDISHPQAVTAEEITEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQDQERLVKDIITETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSEQ 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AIVLLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDV 855 Query: 883 NK 884 K Sbjct: 856 EK 857 >gi|319790646|ref|YP_004152279.1| alanyl-tRNA synthetase [Thermovibrio ammonificans HB-1] gi|317115148|gb|ADU97638.1| alanyl-tRNA synthetase [Thermovibrio ammonificans HB-1] Length = 878 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/911 (42%), Positives = 550/911 (60%), Gaps = 55/911 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TFL+FF++ GH + SS L+P NDPTL+FTN+GMV FK+ F G+E+P ++ T Sbjct: 4 SADRIRETFLKFFEEKGHARVKSSPLVPKNDPTLLFTNAGMVQFKDYFLGKEEPPFKRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+RAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI+ AW+L+T+ F L + Sbjct: 64 SCQKCMRAGGKHNDLENVGRTGRHHTFFEMLGNFSFGDYFKEEAIKFAWELVTEVFKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 RLY++VY EDEEAF++W+ + G+ ++I R+ DNFW+M +TGPCGPCSEI++D+GE Sbjct: 124 ERLYVSVYKEDEEAFRIWRDVVGVPQERIYRLGEKDNFWAMGDTGPCGPCSEIYYDRGEE 183 Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 C P GS + +RY+EIWNLVFMQFE+ + L K SIDTGMGLER+A+VLQ Sbjct: 184 FACGPNCGIGSC-DCDRYLEIWNLVFMQFERDESGKLRPLEKPSIDTGMGLERIASVLQG 242 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NY+ DL L++ + +++G+ Y + + RVI DHLR+ +FLI+DG+LPANEGR Sbjct: 243 VPSNYETDLLFPLVKWASKLSGVPYGRSEKSDTSMRVIADHLRAMTFLISDGVLPANEGR 302 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA + RLLG P + + + MG AYPEL ++ L+E +R E+ER Sbjct: 303 GYVLRRIIRRASRHGRLLGIKGPFLYSGVKEVVKIMGKAYPELELSRELVERVVRREEER 362 Query: 358 FGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL+RGL + ++ L ++++ G FKLYDT G P+D++ ++ GL +D+ Sbjct: 363 FSRTLERGLQIFQEIIDELKSRSEKVIPGSEVFKLYDTFGFPIDLVLEVANDEGLR-VDL 421 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + L+EQR RAR K W K GA + + +L R S Sbjct: 422 EGFEKLLKEQRERAR------------KAW-----KGGAQKVVSPELQRLS--------- 455 Query: 476 LCQKPPIDLTNGVSSI-----VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + P L G + V I++ E+VE G++ V+ D+TPFY E GGQ+GD Sbjct: 456 -LEHP--TLFTGYEHLEEYAKVVGILKGEELVESISEGEEATVILDRTPFYPEKGGQVGD 512 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG G ++TD Q E + H V RG L + +D + RR ++ H+AT Sbjct: 513 TGTLEGTDSLCKVTDTQNITEKLIGHKVKVLRGKLSVGDYVEARVDEERRRAITRAHTAT 572 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG+HV Q GS + PD LRFD TH + T EL+++E+ VN I +N PV Sbjct: 573 HLLHKALKEVLGNHVKQAGSLVLPDRLRFDFTHFEAPTKEELRAVEELVNRWITENYPVK 632 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M ++A+ GA AL G KY VRVV V S LCGGTHV +G+I + Sbjct: 633 IEEMPYDEALERGAIALFGEKYGSVVRVVDVG-----GVSVELCGGTHVKRSGDIGFFKL 687 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV--EEIWEEYR 768 SESSI +G RR+EA+ G A + +++ ++ L L+ + + +V + + + Sbjct: 688 TSESSISSGTRRVEAVVGPEALKWVWEKEKLIEELKGALQSPEEQLTAKVERLKEELKEK 747 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQSGII 825 + +L KRKL D + N I ++VD +EL + DAL+ K +S + Sbjct: 748 ERELEQLKRKLASGKLDELLKNAKEANGFKVITAKVDGLAGRELVDLADALRNKAKSAAV 807 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 MLVG+ K KA+++I +T+DL +RF A +L R A +L G GGGRP +AQ G + ++ Sbjct: 808 MLVGV-KGGKANLVIALTKDLTNRFKAGELIREVAPIL-QGKGGGRPDLAQGGVKDLSRL 865 Query: 886 DQAIAGVASFL 896 +A S L Sbjct: 866 QEAFDKFYSLL 876 >gi|71275909|ref|ZP_00652192.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Dixon] gi|71899253|ref|ZP_00681415.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Ann-1] gi|170729338|ref|YP_001774771.1| alanyl-tRNA synthetase [Xylella fastidiosa M12] gi|205830290|sp|B0U1K9|SYA_XYLFM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71163286|gb|EAO13005.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Dixon] gi|71730986|gb|EAO33055.1| Alanyl-tRNA synthetase, class IIc [Xylella fastidiosa Ann-1] gi|167964131|gb|ACA11141.1| Alanine--tRNA ligase [Xylella fastidiosa M12] Length = 884 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/910 (40%), Positives = 548/910 (60%), Gaps = 50/910 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FLEFF+ GH+++PS+ L+P NDPTL+FTNSGMV FK++F G EK V Sbjct: 8 TTSKIRSDFLEFFKNKGHKIVPSAPLVPGNDPTLLFTNSGMVQFKDVFLGAEKRSEVRVA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 VQ C+RAGGKHNDLD+VG T RHHTFFEMLGN+SFG YFK+ AI AW+LLT ++L Sbjct: 68 DVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAITWAWELLTHVWELPP 127 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL +TVY D+E++ LW+ + G+ D+I+RI N DNFW MA+TGPCGPC+EI Sbjct: 128 ERLLVTVYRTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCGPCTEI 187 Query: 176 FFDQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I G E+G+R+IEIWNLVFMQF++Q+ LP +DTGMGLER+A Sbjct: 188 FYDHGEHIPGGPPGSPGEDGDRFIEIWNLVFMQFDRQSDGTLVPLPTPCVDTGMGLERLA 247 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ NY+IDLF+ LI + ++T + N + VI DH R+ +FLI DG+LP+N Sbjct: 248 AILQHVHTNYEIDLFQTLILKAAELTAVADVQNKSLC--VIADHSRACAFLIVDGVLPSN 305 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +LG +P +++P L MG AYP+L A + TL +E Sbjct: 306 EGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLVAVMGDAYPKLQAAAESVMRTLLAE 365 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TLD G+ + + V + + + ++ G AF+LYDT+G P+D+ DI RG+ +D Sbjct: 366 EERFAETLDVGMKIFNEVAAKVA-NGVIPGSDAFRLYDTYGFPVDLTADIARERGMR-VD 423 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F A+ +QR ARA G G ++ T F+GY+ L+ Sbjct: 424 MAGFEAAMTQQRKTARAAG-KFGRGV--QLSAERAAMLSPTVFLGYEQLQADGLR----- 475 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A++ G + + A G +V V+ D+TPFYAE+GGQ+GD G Sbjct: 476 -----------------VVALLSDGGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTL 518 Query: 535 IG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + DG+RL++TD QK H + +G ++ L ++ R+ +++NHSATHLL Sbjct: 519 MASDGVRLEVTDTQKLMGQFHGHVTRIVQGGVKVGDVLSGSVAVARRKMVALNHSATHLL 578 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++ G+HV+Q GS + PD LRFD +H +PI++A++ IE VND + N V+ Sbjct: 579 HCALRSVFGTHVAQKGSLVAPDRLRFDFSHFEPISAAQMTLIERMVNDEVRANHLVMIEQ 638 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M + A+ +GA AL G KY + VRVV + S LCGGTH++ TG+I L I+SE Sbjct: 639 MGMQAALDAGAMALFGEKYGEHVRVVKMGT------SVELCGGTHITRTGDIGLFKIISE 692 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + +G+RRIEA+TG+ A +H++ ++ +L +A + + +VV + ++ + + L+ Sbjct: 693 CGVSSGVRRIEAVTGESALNHVLAEEHRLYEVAGLIGSNANDVVNHIRQLTDRQKTLERE 752 Query: 774 HAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K K +L + DL + +ADV ++ + +D K L+ +D L+ ++ +I+L Sbjct: 753 LEKLKGKLISGTITDLLSTAVNVADVKVVAARLDGLDGKALREALDRLKLQLSDAVIVLA 812 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G++ K A V V + + A L A + G GGGR AQ GG +G A Sbjct: 813 GVTGGKVALVTAVNGPRAMGKVKADTLLSHVATQI-NGRGGGRVDFAQGGGEDGPSLRSA 871 Query: 889 IAGVASFLKK 898 + GVA+++K+ Sbjct: 872 LDGVATWVKQ 881 >gi|148244942|ref|YP_001219636.1| alanyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA] gi|205830283|sp|A5CVU0|SYA_VESOH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146326769|dbj|BAF61912.1| alanyl-tRNA synthetase [Candidatus Vesicomyosocius okutanii HA] Length = 865 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/906 (41%), Positives = 537/906 (59%), Gaps = 58/906 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL++F+ GH + S+SLIP ND TL+F N+GMVPFK++F+G EK Y +V Sbjct: 4 AQIRQKFLDYFESKGHIIESSASLIPHNDKTLLFVNAGMVPFKDVFSGIEKRPYTRAVSV 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+C RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LTKE +L ++ Sbjct: 64 QRCARAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIHYAWEFLTKELNLPKKN 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+++V+D+D EA +W G ++I R DNFW M +TGPCGP SEIF+D GE I Sbjct: 124 LWVSVFDQDNEAEDIWVNEIGFPKNRISRCGAKDNFWQMGDTGPCGPSSEIFYDHGEHIA 183 Query: 185 GGLPG-SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 GG PG ++E+G+RYIEIWNLVF +F++Q L +DTGMGLER+ VLQ K NN Sbjct: 184 GGPPGHANEDGDRYIEIWNLVFTEFDKQEDGYLKPLAVPCVDTGMGLERLVAVLQHKNNN 243 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPANEGRGY 299 YD D F++L++A V + + NNI ++ RVI DH+RS++F+I DG++P+NEGRGY Sbjct: 244 YDTDGFQNLVKA---VVNLTPKFNNIKDNNASVRVITDHIRSAAFMIVDGVIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RR + + +G + L L E YPEL QA +E+ L+ E++RF Sbjct: 301 VLRRIIRRGIRHGHKMGIGKVFFYRLASILALEFKDVYPELEQALSKVEKVLKREEQRFS 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTLD+G+ +L+ V+++ EI NG + FKLYDT+G P+D+ DI R L ID+ F Sbjct: 361 KTLDQGMSILEEVITNFKGSEI-NGKIVFKLYDTYGFPVDLTSDIARERNLT-IDMSGFE 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEK----YGATQFIGYDLLRGSKFMKEDRKV 475 + +QR RAR S F + EK T+F+GY L+ Sbjct: 419 VEMTKQRDRARQASD-----------FKISEKGVDIAERTEFLGYKQLKN---------- 457 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S+++AI+ E+VE+ G VV Q+ FYAE+GGQ+GD G Sbjct: 458 -------------VSLIQAIINNNELVEKIEVGDHGIVVLAQSSFYAESGGQIGDKGILS 504 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ++ K+ G F HH ++ +G+L+ ++ +D ++R+ ++ NHSATHLLH Sbjct: 505 NMQVEFRVDHTNKQKSGAFEHHGVLNKGVLKVSDAVQANVDKKSRKCIARNHSATHLLHA 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG V Q GS + + LRFD ++ K I ++L+ IE VN I N V T I N Sbjct: 565 ALHIVLGKAVMQKGSLVGSEKLRFDFSYDKVIVKSDLERIESIVNRKILGNTKVYTDITN 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A GA L G KY D VRV+++ + S LCGGTHV+ G+I L I+SESS Sbjct: 625 IEGAKKKGAMTLFGKKYGDTVRVLTMGKNE---FSVELCGGTHVNQLGDIGLFRIISESS 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + AG+RRIEA+TG A L +A + S VVG+V ++ ++ ++L Q+ Sbjct: 682 VSAGVRRIEALTGYDAYQFDNRIQNSLNKIAQMTRSSNTEVVGKVTQLIKQQKELEKQIA 741 Query: 774 HAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ++K+ N D + ++ + +S ++ V SK+L++++D L+ K+ S +I+L + Sbjct: 742 TFQKKIANNQGDDLIVQAQEVKGIKLLSTVVEGVTSKDLRNIVDKLKDKLSSAVIVLAVV 801 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K S++ VT+DL ++ A + AK + GG G GR MAQ GG +A+A Sbjct: 802 IND-KVSLVTGVTKDLTKQYQARKILNHVAKQI-GGKGDGRSDMAQGGGTKPECLIKALA 859 Query: 891 GVASFL 896 V S + Sbjct: 860 SVKSLI 865 >gi|297616546|ref|YP_003701705.1| alanyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680] gi|297144383|gb|ADI01140.1| alanyl-tRNA synthetase [Syntrophothermus lipocalidus DSM 12680] Length = 877 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/903 (42%), Positives = 548/903 (60%), Gaps = 51/903 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR FL++F +NGH ++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MRTSSEIRKMFLDYFAENGHTVVESSSLVPANDPTLLFTNAGMNQFKDVFLGIDKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDL+ VGRT RHHTFFEMLGNFSFG YFK AI AWDLLT+ L Sbjct: 61 ATSSQKCVRAGGKHNDLETVGRTARHHTFFEMLGNFSFGDYFKREAIFYAWDLLTRVIGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL++T++ +D+EAF+LW++I+G+S KI+R+ DNFW+M +TGPCGPCSEI +D+G Sbjct: 121 PPERLWVTIFTDDDEAFELWQEIAGISPQKIVRMGEKDNFWAMGDTGPCGPCSEIIYDRG 180 Query: 181 ECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E P + + +R++EIWNLVFMQF + LP+ SIDTGMGLER+ ++L Sbjct: 181 EKYRCDAPLCALGVCDCDRWLEIWNLVFMQFNRDEAGNLTPLPRPSIDTGMGLERITSIL 240 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 Q +N+D DLF +IQ E++TG KY+ G RVI DH R+ +FLI DG+LP+NEG Sbjct: 241 QGVDSNFDTDLFIPIIQKIEEMTGKKYDRGPGGFPFRVIADHSRACTFLIGDGVLPSNEG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + RLLG P + ++ + +M +YP+L+ + + + +R E+E Sbjct: 301 RGYVLRRILRRAVRFGRLLGIEAPFLYRMVGVVVDKMKDSYPDLVDKQEFVAKVVRMEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 RF TL+ G+ + ++ G+ +I +G AF LYDT+G PLD+ +D+ GL G+ Sbjct: 361 RFFVTLNEGIRKVGEIIERCQAEGRKDI-SGQDAFMLYDTYGFPLDLTEDMAEENGL-GV 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 + FN+ +EEQR RAR G + EK + E +T F GY L Sbjct: 419 NKEDFNRLMEEQRERARRAQKGEDAFAQEKRLAEMLEGIPSTDFEGYQRL---------- 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 LT ++AI+ E ++ G + +V QTPFYAE+GGQ+ D G Sbjct: 469 --------FTLTQ-----IQAIISGDEELDLIRDGGAI-LVLAQTPFYAESGGQVADKGV 514 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G + DV KK G +H+ V+ GIL + +D Q R + NH+ATHLL Sbjct: 515 IKGSEGTFIVDDV-KKVAGWILHYGRVQ-GILVKNEEVQAEVDEQRRLATARNHTATHLL 572 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G H Q GS + P+ LRFD +H P+T E+++IED VN I V + Sbjct: 573 HRALRMVVGEHAQQKGSLVEPERLRFDFSHFAPLTEEEIQAIEDIVNRKIWDLEKVEVDL 632 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 E+A GA AL G KY D VRV+S+ G S LCGGTHV +TG+I L I++E Sbjct: 633 ATLEEAKQKGAMALFGEKYGDEVRVISI-----GDFSIELCGGTHVENTGQIGLFKIINE 687 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRK 769 SI AG+RR+EA+TG RA +L Q+ +LK+ AS LKV + RVE E+ E ++ Sbjct: 688 GSIGAGLRRVEALTGPRALDYLNAQERELKTAASVLKVPAQELAQRVESLSRELKESEKE 747 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIM 826 ++ + K Q E L + +VN + +++E+ ++ L+ + L+ K+ +++ Sbjct: 748 IEALKNKLARQEAAELL--QQAFEVNGVKVLVAEMSGQDMAVLRQNGEMLRDKLGRAVVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G +++ K ++++ V ++L DR +A ++ +AKV+ GGGGGGR MAQ+GG K Sbjct: 806 L-GSARDGKVNLVVFVAKELTDRLHAGEIVSAAAKVV-GGGGGGRADMAQAGGKIPEKLG 863 Query: 887 QAI 889 +A+ Sbjct: 864 EAL 866 >gi|325144845|gb|EGC67133.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240013] Length = 874 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/902 (42%), Positives = 532/902 (58%), Gaps = 68/902 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ D+ G+ + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADMARELGIE-L 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V+E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGRHVEQKGSLVTTESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NK 884 K Sbjct: 856 GK 857 >gi|121635253|ref|YP_975498.1| alanyl-tRNA synthetase [Neisseria meningitidis FAM18] gi|205830172|sp|A1KV20|SYA_NEIMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120866959|emb|CAM10719.1| alanyl-tRNA synthetase [Neisseria meningitidis FAM18] gi|325138605|gb|EGC61164.1| alanyl-tRNA synthetase [Neisseria meningitidis ES14902] gi|325142798|gb|EGC65170.1| alanyl-tRNA synthetase [Neisseria meningitidis 961-5945] gi|325198706|gb|ADY94162.1| alanyl-tRNA synthetase [Neisseria meningitidis G2136] Length = 874 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/902 (42%), Positives = 532/902 (58%), Gaps = 68/902 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + ++ IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ K L+G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALAKGSKK--LDGEIIFKLYDTYGFPYDLTADICRERNIE-L 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V+E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NK 884 K Sbjct: 856 GK 857 >gi|325134725|gb|EGC57364.1| alanyl-tRNA synthetase [Neisseria meningitidis M13399] gi|325205670|gb|ADZ01123.1| alanyl-tRNA synthetase [Neisseria meningitidis M04-240196] Length = 874 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/902 (42%), Positives = 532/902 (58%), Gaps = 68/902 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L+G++ FKLYDT+G P D+ D+ G+ + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLDGEIIFKLYDTYGFPYDLTADMARELGIE-L 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V+E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NK 884 K Sbjct: 856 GK 857 >gi|325267938|ref|ZP_08134587.1| alanine--tRNA ligase [Kingella denitrificans ATCC 33394] gi|324980624|gb|EGC16287.1| alanine--tRNA ligase [Kingella denitrificans ATCC 33394] Length = 873 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/916 (40%), Positives = 546/916 (59%), Gaps = 68/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y+ TT Sbjct: 3 TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYKRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +V+ DH+RS SFLIADG++P+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVVADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ G ++ L+G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALTK-GSNK-LDGEIIFKLYDTYGFPYDLTADICRERNI-DL 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN+ +E QR+RARA K L T+F GY+ ++ Sbjct: 419 DEEGFNREMEAQRARARAA-------QNFKANAQLDYTGADTEFTGYEK------RSQET 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K++ A+ + E V+E +G+ VV +QTPFYAE+GGQ+GD G Sbjct: 466 KII-----------------ALYKGSEAVDELQAGEAGVVVLEQTPFYAESGGQVGDVGF 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + R ++ D QK + V G L+ ++ ID R + NHS THL+ Sbjct: 509 IVSGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRNSIMRNHSVTHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + RFD++H + I++ E+ +E VN I N+PV Sbjct: 569 HKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKVET 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA SGA L G KY D VRV+++ G +S+ LCGGTHV+ TG+I I+SE Sbjct: 629 MSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AGIRR+EAITGQ A + Q+ +K++ + +K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGIRRVEAITGQAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL N +DL K+ + D+ L+ ++ L K + Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIDADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L ++ A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTNKVKAGDLIKFAAEQI-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFLKK 898 ++ + S++++ Sbjct: 856 SQVGAMLDSAESWVRE 871 >gi|325132719|gb|EGC55402.1| alanyl-tRNA synthetase [Neisseria meningitidis M6190] Length = 881 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/902 (42%), Positives = 532/902 (58%), Gaps = 68/902 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 10 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 70 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 190 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + ++ IEE L++ Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGDAYPELKEKQVQIEEALKN 368 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ K L+G++ FKLYDT+G P D+ DI R + + Sbjct: 369 EESRFAQTLETGMALLENALAKGSKK--LDGEIIFKLYDTYGFPYDLTADICRERNIE-L 425 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V+E G VV D TPFYAE+GGQ+GD G Sbjct: 469 Q-------------TESKVLALYKDGEQVDELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 516 IFSGENRFEVLDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 576 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 635 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 636 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 805 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862 Query: 883 NK 884 K Sbjct: 863 GK 864 >gi|309378363|emb|CBX23009.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 874 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/914 (42%), Positives = 536/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI LAW+ LT K ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHLAWEFLTSPKCLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+E + +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLPTVYAEDDEPYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +VI DH+RS SFLIADG+LPA Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVIADHIRSCSFLIADGVLPA 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L + T+F GY + + Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYEGQDTEFKGYSE------RQTEA 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KVL A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 466 KVL-----------------ALYKNGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVSVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSEQ 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AIVLLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGSDV 855 Query: 883 NKADQAIAGVASFL 896 K I V ++ Sbjct: 856 EKLPAMIDSVKDWV 869 >gi|222100169|ref|YP_002534737.1| Alanyl-tRNA synthetase [Thermotoga neapolitana DSM 4359] gi|221572559|gb|ACM23371.1| Alanyl-tRNA synthetase [Thermotoga neapolitana DSM 4359] Length = 864 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/906 (40%), Positives = 549/906 (60%), Gaps = 67/906 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY + T QK Sbjct: 9 IREAFLRFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRIATCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ + + +L+ Sbjct: 68 CLRT----VDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLW 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG----- 180 ++VY+EDEEAF++W + GL KI+R+ DNFW A TGPCGP +EIF+D G Sbjct: 124 VSVYEEDEEAFRIWNEKIGLPEKKILRLGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGC 183 Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 EC P G R++EIWNLVF ++ Q + + LP+ +IDTG GLER + Sbjct: 184 PEGEECTPANSEG------RFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAM 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q +N+D DLF+ +I+A E++TG+ Y+ + ++ RVI DH+R+ +FLI++G+ P+N Sbjct: 238 MQGVYSNFDTDLFQPIIKAIEELTGVSYKTDEEKDISIRVIADHIRAITFLISEGVFPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRAM + LLG EP + ++ A+ +MG YPE+++ K +++E L SE Sbjct: 298 EGRGYVLRRIIRRAMRHGILLGMNEPFLYKVVDAVVEKMGKVYPEIVRGKDMVKEVLSSE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + RF KTL++G+ + D ++ GK ++ AF+LYDT+GLPL++ +I +G+ ID Sbjct: 358 ENRFLKTLEQGMRIFDELVEKKGK---IDSQDAFRLYDTYGLPLELTLEIAKEKGVE-ID 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F++ ++EQ+ ++R + + SL E + T+F GY+ L E Sbjct: 414 VKDFDRYMKEQQRKSREAMGKVEFAKRYEYLESLPEGF-KTEFTGYERLE-----DEAET 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 VL I ++ +EEA VEVVF +TPFYAE GGQ+ D G Sbjct: 468 VL------------------IAKENRPLEEAKEKDTVEVVFSRTPFYAEKGGQVSDVGTV 509 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ V + EG+ VH V +GILR + L +D + R+ NH+ATHLLH Sbjct: 510 EWESGEGRVEYVFEALEGVIVHRIRVLKGILRRGQKVFLKVDRKRRKDTMRNHTATHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + P+ LRFD TH + +++ E+K +ED VN+ I Q +PV R Sbjct: 570 AALRKVLGEHVRQAGSLVAPERLRFDFTHYRALSAEEIKKVEDMVNEWIMQAIPVEVRYT 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+AI SG AL KY D VRVV V S LCGGTHV +TG+I L IVSE Sbjct: 630 SYEEAIRSGVIALFTEKYGDVVRVVEVP-----GVSKELCGGTHVKNTGQIGLFKIVSEE 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ +G+RR+EA+TG + ++ + L L + ++ RVE + E+ R+L+ Sbjct: 685 SVSSGVRRVEAVTGFYTLELIRRYEDVMTRLKELLGAGENEIINRVESLREKVRELE--- 741 Query: 775 AKRKL---QLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 R+L +++ E +S K+ D + V+SK L + D + + +SG+++L Sbjct: 742 --RRLSQGRVSEERISEKKLNDGTKLFYGVFEGVESKHLGGIADNVLNREKSGVVVLFS- 798 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E K S+++ V+ DL+++++A +AR AK L GG GGGR + AQ+GG + + D+ + Sbjct: 799 RFEDKVSLVVKVSNDLIEKYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERLDEVLN 857 Query: 891 GVASFL 896 + FL Sbjct: 858 RLEEFL 863 >gi|326566717|gb|EGE16856.1| alanyl-tRNA synthetase [Moraxella catarrhalis 103P14B1] Length = 887 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/897 (41%), Positives = 525/897 (58%), Gaps = 62/897 (6%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 L FF H +PSSSLIP NDPTL+FTN+GM FK+ F G EK Y + QKCVRA Sbjct: 7 LLTFFVSKQHTHVPSSSLIPHNDPTLLFTNAGMNQFKDTFLGLEKRDYVRAVSSQKCVRA 66 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYIT 128 GGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LT E L + RLY+T Sbjct: 67 GGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIAFAWEFLTDEKWLALPKDRLYVT 126 Query: 129 VYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGE 181 VY D+EAF +W K GL ++II I N DNFW M +TGPCGPC+EIF+D GE Sbjct: 127 VYHTDDEAFDIWHKDIGLPQERIIAIGDNKGGAYQSDNFWMMGDTGPCGPCTEIFYDHGE 186 Query: 182 CIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 I GGLPG+ E+G+RYIEIWN VFMQF +Q LPK S+DTGMGLER++ ++Q Sbjct: 187 HIWGGLPGTPDEDGDRYIEIWNCVFMQFNRQKDGTMQPLPKPSVDTGMGLERISAIMQGV 246 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NY+ D+F L+ + + G+ + + N + +V+ DH+RS +FLIADG++P+NEGRG Sbjct: 247 HGNYETDIFTKLMTKAVNIIGLPTDTDIQNEPSLKVLADHIRSVAFLIADGVIPSNEGRG 306 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LG T+ L+ L MG AYP+L + IE+ + E+E+F Sbjct: 307 YVLRRIIRRAVRHGNKLGATDAFFYQLVHPLADIMGDAYPQLRHEQHKIEQAILKEEEQF 366 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KTL +GL LL L L + + L G+ FKLYDT+G P D+ DI+ +G+ ID F Sbjct: 367 AKTLSQGLKLLSQELDSLQQGDALAGETVFKLYDTYGFPADLTADIVREKGIT-IDEAGF 425 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++ EQR+RAR +G + +L + AT+F+GY+ L Sbjct: 426 ELSMAEQRTRARE------AGKFAMDYHALIQVDSATEFLGYERLDN------------- 466 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S V + Q G+ V+ G + ++ D+TPFYAE+GGQ+G+ G + Sbjct: 467 ----------DSTVIHLYQDGKAVDTLAEGDEGVLILDKTPFYAESGGQVGELGEISTES 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + D QK + I +HH +V+ G + S + Q R + NHSATHLLH AL Sbjct: 517 GVFDVLDTQKSGQAI-IHHGVVKMGHINNNQSATAQVASQVRASSAKNHSATHLLHAALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 TILG VSQ GS ++ D LRFD ++ KP+T + IE VN I N P I++ + Sbjct: 576 TILGDGVSQKGSMVSSDLLRFDFSYDKPLTEQNISQIEIMVNQQILANTPAHVEILDIDS 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEY--EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A GA L G KY D VRV+S+ +DG S LCGG HV+ TG+I L I+SE I Sbjct: 636 AKNKGAMMLFGEKYGDTVRVLSMGTTDKDGKPFSIELCGGLHVTRTGDIGLFKIISEQGI 695 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG A +++ D++L LA+ K + + RV ++ ++ R L+ K Sbjct: 696 SAGVRRIEAVTGMGAVNYVQQGDKQLNQLANQFKAKRHEIAQRVAQLSDKNRHLE----K 751 Query: 777 RKLQLNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQSGIIML 827 + +LN + S H + ++ + +I ++ +D+K L+++ D ++ K+ GI++L Sbjct: 752 QIERLNQKFASLHANSLMDNLKNIHGQKVLIATVNGMDNKALRTLSDDMKSKLADGIVIL 811 Query: 828 VGI---SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 I E K ++ V + L + A D+ + ++ L GG GGG+P AQ G + Sbjct: 812 ASIYTADGEDKIAMTASVGKHLTGKIKAGDIIKHLSENL-GGKGGGKPDFAQGGATD 867 >gi|302877754|ref|YP_003846318.1| alanyl-tRNA synthetase [Gallionella capsiferriformans ES-2] gi|302580543|gb|ADL54554.1| alanyl-tRNA synthetase [Gallionella capsiferriformans ES-2] Length = 873 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/908 (41%), Positives = 538/908 (59%), Gaps = 56/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FF GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y + Sbjct: 4 SEIRQQFLDFFASKGHAIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYVRAASS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L + R Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAISFAWELLTEVFKLPKER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 LY+TVY ED+EA+ +W K GL A ++IRI N DNFW M +TGPCGPC+EIF+ Sbjct: 124 LYVTVYAEDDEAYDIWTKEMGLEASRVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D GE I GGLPG+ EE G+R+IEIWN VFMQF + LPK S+DTGMGLER++ V Sbjct: 184 DHGEHISGGLPGTPEEDGDRFIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERISAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ NY+IDLF+ LI A+ + T + + +V+ DH+R+ SFLIADG++P NEG Sbjct: 244 LQHVHANYEIDLFQALINAAARETNCS--DMDSPSLKVLADHIRACSFLIADGVIPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RG+VLRRI+RRA+ + LG E L+P L +MG AYPEL A+ ++ L+ E+E Sbjct: 302 RGFVLRRIIRRAIRHGYKLGAREAFFYKLVPDLVAQMGVAYPELTAAQDRVKGVLKLEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF T++ G+ +L+ L + + + + NG+ AFKL+DT G P+D+ D+ G+ +D Sbjct: 362 RFFATIENGMAILEADLLAMKQAGNTVFNGETAFKLHDTFGFPVDLTADVCREHGVT-VD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + +F+ A+ +Q+ +ARA K+ +L+ + AT F GY+ L Sbjct: 421 VAAFDAAMAQQKQQARAAG-------KFKMAANLEYEGPATLFHGYETLEH--------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V A+ + G V E G VV D TPFYAE+GGQ GD+G Sbjct: 465 --------------AGCVLALYKDGVSVGELNEGDTGVVVLDNTPFYAESGGQTGDSGEL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G + D QK +F HH +++ G L + ++ RR NHS THL+H Sbjct: 511 RGSHGIFAVEDTQKIQAAVFGHHGVLKTGKLLVGNGVQARVNMAARRATERNHSVTHLMH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + D RFD HS+P+T +E+ +E VN I N +R+M Sbjct: 571 KALREVLGAHVQQKGSQVDADKTRFDFVHSQPVTDSEVLRVEFIVNAEILSNAASQSRVM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 EDA +GA L G KY D VRV+++ S LCGGTHV+ TG+I L IVSES Sbjct: 631 GIEDAQQTGAMMLFGEKYGDEVRVLNIG------SSIELCGGTHVARTGDIGLFKIVSES 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+TG+ A + Q +L+++A +K GR+ ++ + + L +L Sbjct: 685 GVAAGVRRIEAVTGEGALDLIQMQQRQLRAVADAVKAQPHEAAGRIAQLLDHQKSLEKEL 744 Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL D + D+N ++ ++ D+ L+ +D L+ K++S +I+L Sbjct: 745 TALKSKLASAQGDELVAQAQDINGVKVLAALLPGADAAILRETLDKLKDKLKSAVILLAS 804 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K +++ VT D + A +L ++A+ + GG GGGRP MAQ+GG A+ Sbjct: 805 VT-DGKVALIAGVTADQTAKVKAGELVNMAAQKV-GGKGGGRPDMAQAGGTQPEHLAAAL 862 Query: 890 AGVASFLK 897 A V +++ Sbjct: 863 ASVTDWVR 870 >gi|323705255|ref|ZP_08116830.1| alanyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535157|gb|EGB24933.1| alanyl-tRNA synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 877 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/899 (40%), Positives = 561/899 (62%), Gaps = 52/899 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+ GH LPS SL+P ND +L+ N+GM P K FTG+E P + VTT Sbjct: 6 MNEIREKYLSFFESKGHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGKEIPPSRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D+D VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +TK +L + Sbjct: 66 CQKCIRT----PDIDRVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTKVLELPED 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++T+Y+ D+EAF++W K+ GL ++I+R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 122 RLWVTIYENDDEAFEIWNKVVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEDK 180 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R+IE WNLVF QF++ + LPK +IDTGMGLER+AT++QE Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFDKDAEGNYNPLPKPNIDTGMGLERIATIMQEVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D+ + + ++ G+KY + + V+ RVI DH+R +F+I+DGILP+NEGRGY Sbjct: 241 SIFDVDVIRGITDYVGKMAGVKYGADKKSDVSLRVITDHIRGVTFMISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA Y +LLG P + ++ + AYPE+ + K I++ ++ E+ERF Sbjct: 301 VLRRLLRRAARYGKLLGLDRPFLYDVVDVVVEHYKGAYPEIQERKEYIKKVIKKEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D+GL +LDG ++ L GK+ +L G AFKLYDT+G P+++ ++IL G++ +D Sbjct: 361 ETIDQGLDILDGYINDLKASGKN-VLEGSKAFKLYDTYGFPIELTKEILSESGMS-VDED 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + + LE QR RAR+ + + I+ ++K+ T+F+GY+ K D KVL Sbjct: 419 GYQKELENQRLRARSSRKEDNALWEKDIYSTMKDI--ETKFVGYEAF------KSDAKVL 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 AI++ E+V A +G++V ++ D TPFYAE+GGQ+GD+G Sbjct: 471 -----------------AIIKDDELVNSAEAGEEVNIILDMTPFYAESGGQVGDSGIIKS 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + + I D +K FVH +ERGIL ++ ID +NR + NH+ATHLLH A Sbjct: 514 EDVYINIKDCKKAGGNKFVHIGTIERGILNVGDTVEAIIDEKNRMSTARNHTATHLLHSA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +G HV Q GS +TPD LRFD TH + +T+ E+K IED VN+ I +++ V IM++ Sbjct: 574 LRKFIGDHVHQAGSLVTPDRLRFDFTHYQALTAYEIKMIEDEVNEKIYESIGVSIDIMSQ 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++AI GA AL KY D VRVV++ +S LCGGTHV++T +I I++ES + Sbjct: 634 DEAIKKGAMALFQEKYGDVVRVVNI-----SDYSKELCGGTHVTNTIQIGAFKIIAESGV 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RRIEA+TG A L + E + ++ LKV++ ++V R+ ++ + + L QL Sbjct: 689 AAGVRRIEAVTGLGALEFLNKKGELISNIEQILKVNEKDIVDRIADLSQTIKDLERQLEQ 748 Query: 775 AKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K K+ L++ D + D+N F+S ++++D ELK + D L+ +++S +I+L I Sbjct: 749 LKSKVVLSMSDKLINSAEDINGIKFVSATLNDLDVDELKMMGDILKDRLKSTVIILATI- 807 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +++K + + + T+D ++R N ++ R +V G GGGR MAQ G N K + A+ Sbjct: 808 RDEKINFVGMATKDAIERGINVGNIIREICQV-ADGKGGGRADMAQGVGNNLEKINIAL 865 >gi|134298636|ref|YP_001112132.1| alanyl-tRNA synthetase [Desulfotomaculum reducens MI-1] gi|205830077|sp|A4J2K4|SYA_DESRM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|134051336|gb|ABO49307.1| alanyl-tRNA synthetase [Desulfotomaculum reducens MI-1] Length = 878 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/905 (41%), Positives = 556/905 (61%), Gaps = 51/905 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +L FF++ GH++LPS+SLIP NDP++++T +GMVPFK FTGQ P YQ VTT QK Sbjct: 7 IREKYLRFFEQRGHQILPSASLIPHNDPSILWTAAGMVPFKPFFTGQAVPEYQRVTTCQK 66 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R D+++VGRT RHHTFFEMLGNFSFG YFKE I AW+ +TKE +L + +L+ Sbjct: 67 CIRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKESIIPWAWEFITKELNLPKEKLW 122 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 IT+Y +D+EAF++W K+ G+ +++I+R+ + NFW + GPCGPCSEI+ D GE G Sbjct: 123 ITIYQDDDEAFEIWNKVVGIPSERIVRLGKDTNFWEIG-VGPCGPCSEIYVDLGEARGCG 181 Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P + +R++EIWNLVF+QF + + L IDTGMGLER+A+VLQ +N+ Sbjct: 182 SPECQVGCDCDRFLEIWNLVFIQFFRDEEGNYSPLENKGIDTGMGLERVASVLQGVASNF 241 Query: 245 DIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 D D+F+ ++ + + G +Y + + + +VI DH R+ +F ++DG LP NEGRGYV+R Sbjct: 242 DTDIFREIMDFTANLAGQEYGQKADIDLALKVIADHCRAVTFAVSDGALPGNEGRGYVIR 301 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RRA+ + R+LG EP + + A+ +M AYPEL Q + +R+E+ERF +TL Sbjct: 302 RLLRRAVRFGRVLGVREPFLYKVAQAVIKQMQDAYPELKQKAEHVLRVIRTEEERFLETL 361 Query: 363 DRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 G +L +++ G EI GD AFKLYDT G PL++ Q+I +GLA +D+ FN Sbjct: 362 AAGSDILSALINEAKASGASEI-TGDDAFKLYDTFGFPLELTQEIAEEQGLA-VDVEVFN 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 A+EEQR RAR+ + + + +L+E+ G T+FIGY L Sbjct: 420 AAMEEQRKRARSARQETEYLSERGVLYKALREELGETRFIGYSALEAD------------ 467 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S + A+++ G AV+G++VE+V D TP YAE+GGQ+ D G Sbjct: 468 -----------SNIMALLKDGMQEISAVAGEEVEIVLDVTPCYAESGGQVADHAILRGPD 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++IT V K EG+ +H V GI++ S+ +D R+ + NHSATHLLH AL Sbjct: 517 LEVEITSVNKPVEGLVIHRGKVLSGIIKRHDSVKAIVDQPRRQDTARNHSATHLLHKALK 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + PD LRFD TH +TS EL+ IE+ VN+ + NL + + Sbjct: 577 EVLGDHVNQAGSLVEPDRLRFDFTHYAAVTSEELRRIEEIVNEAVLSNLSIEVFETSLSK 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A GAAAL G KY +VRVV + G S LCGGTH++ST E+ L I +E+S+ A Sbjct: 637 AKEMGAAALFGEKYGKQVRVVKM-----GDFSMELCGGTHLTSTAEVGLFKIFNETSVGA 691 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHAKR 777 G+RRIEA+TG +L ++E+L+ +AS +K +V R E + ++ + L Q I A R Sbjct: 692 GLRRIEAVTGTGVLKYLKAKEEQLEEIASVIKSPMHELVRRSEALVQQNKSLEQEIEALR 751 Query: 778 K--LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 + V+D+ + + +V ++ +++ D L+ ++D L+ K+ SG+I+L G + Sbjct: 752 NKLAKSEVQDILGNIKRAKEVPVLASVVAAPDMDNLRGMVDMLRDKMGSGVILL-GSTAG 810 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +K +++ VT+DL + +A +L + AK++ GGGGGGRP MAQ+GG N K +AI V Sbjct: 811 EKVNLVAAVTKDLHGQGLHAGNLVKEIAKMV-GGGGGGRPDMAQAGGKNPEKLQEAIDQV 869 Query: 893 ASFLK 897 ++ Sbjct: 870 CRVVE 874 >gi|293399698|ref|ZP_06643850.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae F62] gi|291609949|gb|EFF39072.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae F62] Length = 881 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/914 (41%), Positives = 533/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 10 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 70 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 190 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 368 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 369 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 469 Q-------------TESKVLALYKDGEQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 516 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 576 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 635 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 636 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 805 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 863 DKLPEMLASAEGWL 876 >gi|59801613|ref|YP_208325.1| hypothetical protein NGO1254 [Neisseria gonorrhoeae FA 1090] gi|75432448|sp|Q5F7C4|SYA_NEIG1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|59718508|gb|AAW89913.1| putative alanyl-tRNA synthetase [Neisseria gonorrhoeae FA 1090] Length = 874 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/914 (41%), Positives = 533/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 856 DKLPEMLASAEGWL 869 >gi|255021551|ref|ZP_05293594.1| Alanyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756] gi|254968939|gb|EET26458.1| Alanyl-tRNA synthetase [Acidithiobacillus caldus ATCC 51756] Length = 880 Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/907 (42%), Positives = 551/907 (60%), Gaps = 50/907 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +IR FL+FF GHE++PSS L+P NDPTL+FTN+GMVPFK+ F G E+ Y+ + Q Sbjct: 5 AIRQAFLDFFAARGHEIVPSSPLVPRNDPTLLFTNAGMVPFKDTFLGLEQRPYRRAVSAQ 64 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 +C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK I AW LT+ L RL Sbjct: 65 RCMRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREVIGYAWTFLTEVLKLPPERL 124 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++TV+ ED EA +W + G+ + R DNFWSM +TGPCGPCSEIF+D G IPG Sbjct: 125 WVTVFAEDREAEDIWLREMGIDPARFSRCGEKDNFWSMGDTGPCGPCSEIFYDHGPEIPG 184 Query: 186 GLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G PGS + +G+RYIEIWNLVFMQ+++ + LPK S+DTGMGLER+A VLQ NNY Sbjct: 185 GPPGSPDADGDRYIEIWNLVFMQYDRDSSGRLTPLPKPSVDTGMGLERLAAVLQGVHNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVLR 302 D DLF+ LIQA+ ++G Y + + RV+ DH+R+ SFL+ADG+LP+NEGRGYVLR Sbjct: 245 DTDLFQPLIQAAADISGKVYGADPAADTSLRVLADHVRACSFLMADGVLPSNEGRGYVLR 304 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + R LG + L+P L + MG AYPEL +A+ I+ LR E+ RF +TL Sbjct: 305 RIIRRAVRHGRKLGLGDIFFHRLVPPLVSVMGEAYPELRRAERDIQGHLRREEARFRETL 364 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RGL LL+ + L + G+V F+L DT+G P+D+ DI RGLA +D+ F AL Sbjct: 365 ERGLELLEEAIGGLAPGAPIPGEVIFRLSDTYGFPVDLTADIARERGLA-LDMPGFEAAL 423 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EQR R+RA +G G ++++ L + AT+F+GY G Sbjct: 424 AEQRQRSRAAWVGSGEVKADRLYHDLAMELPATEFLGYGGCSG----------------- 466 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGIRL 541 + V A+++ G+ V+ +G+ V+ DQTPFY E+GGQ+GD G G+R Sbjct: 467 ------AGRVLALIRDGQRVDVLRAGETGSVILDQTPFYGESGGQVGDRGLLTDAAGLRF 520 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + D QK + +H VE G LR + +D R + +HSATHLLH AL T+L Sbjct: 521 VVQDTQKPVASLHLHLGRVESGELRLGHIVHAEVDSDARAATAAHHSATHLLHAALRTLL 580 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHV Q GS +TP+ LRFD +H +P+T A+L+S+E+ VN + N+ +++ A + Sbjct: 581 GSHVQQKGSLVTPERLRFDFSHPEPLTLAQLQSLENWVNAAVRANVVADVQVLPIAQAQS 640 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL G KY + VRV+ + G +S CGGTHV +TG+I I++ES + AGIR Sbjct: 641 LGALALFGEKYGEEVRVLRL-----GDYSLEFCGGTHVQATGDIGCFKILAESGVAAGIR 695 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---------- 771 RIEA G A + + +++L++ A+ L V+ + R+ + E R+L+ Sbjct: 696 RIEAAAGAAAIAAVQLDEQRLRAAAALLHVAPAELDQRLAQTLERQRQLEKELERLRQKL 755 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 A +L VED IA V + I +D K L+ ++D L+ +I GI++L G+ Sbjct: 756 AAQAGERLASAVED-----IAGVPVLVQQIDGMDGKGLRELVDRLRSQIPHGILLLAGVQ 810 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 +K A ++ V+++L DR A L A+V+ GG GGGR +AQ+G + + A A Sbjct: 811 NDKVA-LIAAVSKELTDRVAAGPLVHAVAEVM-GGKGGGRADLAQAGAEHPEQLTAAFAL 868 Query: 892 VASFLKK 898 ++L++ Sbjct: 869 ARAWLEQ 875 >gi|217969991|ref|YP_002355225.1| alanyl-tRNA synthetase [Thauera sp. MZ1T] gi|217507318|gb|ACK54329.1| alanyl-tRNA synthetase [Thauera sp. MZ1T] Length = 873 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/908 (42%), Positives = 534/908 (58%), Gaps = 58/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y TT Sbjct: 4 AEIRDAFLKFFESKGHQIVASSSLVPHEDPTLLFTNAGMNQFKDVFLGFDKRPYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L + + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVFKLPKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W K G+ A+++IRI N DNFW M +TGPCGPC+EIF+ Sbjct: 124 LWVTVYAEDDEAYDIWTKEVGVPAERVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 183 Query: 178 DQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G+ I GG PGS EE G+RYIEIWN VFMQF + + LPK S+DTGMGLER++ V Sbjct: 184 DHGDHIWGGPPGSPEEDGDRYIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERISAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ NY+IDLF+ LI+A+ + T + + +V+ DH+R+ SFLIADG++P NEG Sbjct: 244 LQHVHANYEIDLFQALIKAAARETCSA--DMDSPSLKVLADHIRACSFLIADGVIPGNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG ++P L EMGSAYPEL + I + LR E+E Sbjct: 302 RGYVLRRIIRRAIRHGYKLGARAAFFHKMVPDLVAEMGSAYPELKDGERRIMDVLRQEEE 361 Query: 357 RFGKTLDRGLVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 RF T++ G+ ++ + GK ++ +GD AFKL+DT G PLD+ DI C + Sbjct: 362 RFFATIENGMAIVEAELAAMEAAGK-KVFDGDTAFKLHDTFGFPLDLTADI-CREREVTV 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D ++F+ A+ Q+ +ARA K+ +L+ T F GY LL +E Sbjct: 420 DALAFDAAMARQKEQARA-------AGKFKMAANLEYDGPETTFHGYTLL------EEKG 466 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +L A+ + G V E + G+ VV D TPFYAE+GGQ+GD G Sbjct: 467 NIL-----------------ALYKDGVPVNELLEGEMGVVVLDHTPFYAESGGQVGDRGE 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + D QK +F HH +V G L +V +D R + NHS THL+ Sbjct: 510 LRAAAGIFGVEDTQKIQAAVFGHHGVVRTGKLAVGQGVVARVDVAARAATARNHSVTHLM 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + PD RFD H+ P+++ E++ +E+ VN I N + Sbjct: 570 HKALREVLGAHVQQKGSLVDPDKTRFDFAHTAPMSAEEIREVEEIVNREILANAATQAEV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M E A SGA L G KY D VRV+S+ S LCGGTHV+ TG+I L IV E Sbjct: 630 MALEAAQKSGAMMLFGEKYADEVRVLSIGT------SKELCGGTHVARTGDIGLFKIVGE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 + AGIRR+EAITG+ A + Q+ +++ +++ LKV V RV I + R L + Sbjct: 684 GGVAAGIRRVEAITGENALRYAQEQERRVQGMSALLKVQPDEVAERVAGILDNVRALEKE 743 Query: 772 LIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K KL + D +I + ++ ++ D+ L+ MD L+ K++S I+L Sbjct: 744 LARLKSKLAASQGDELVSQAVEIKGIRVLAALLEGADAPTLRDTMDKLKDKLKSAAIVLA 803 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K S++ VT D + A +L A+ + GG GGGRP MAQ+GG A Sbjct: 804 AVA-DGKVSLIAGVTADHTAKVKAGELVNFVAQQV-GGKGGGRPDMAQAGGTQPENLAAA 861 Query: 889 IAGVASFL 896 +AGV ++ Sbjct: 862 LAGVKDWV 869 >gi|332112510|gb|EGJ12303.1| alanyl-tRNA synthetase [Rubrivivax benzoatilyticus JA2] Length = 877 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/914 (42%), Positives = 539/914 (58%), Gaps = 62/914 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+TFL+FF+ GH ++PSS ++P +DPTL+FTN+GM FK++F G +K Y T Sbjct: 2 KASEIRSTFLKFFESKGHTIVPSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYTRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ F L + Sbjct: 62 TSQKCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKDAISFAWELLTEHFKLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY ED+EA+ +W K+ GL A++I+RI N DNFW M +TGPCGPCSEI Sbjct: 122 DKLWATVYAEDDEAYDIWLKVIGLPAERIVRIGDNKGARYASDNFWMMGDTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS E+ G+RYIEIWN VFMQF + LPK S+DTGMGLER+A Sbjct: 182 FYDHGPDVAGGPPGSPEQDGDRYIEIWNNVFMQFNRTEDGTMHRLPKPSVDTGMGLERLA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH-----RVIVDHLRSSSFLIADG 289 VLQ +NY+IDLF +L+ A+ + G V+ +VI DH+R+ +F +ADG Sbjct: 242 AVLQHVHSNYEIDLFVNLLAAARSAV--EAAGGQDVDAESPSLKVIADHIRACAFTVADG 299 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 I+P NEGRGYVLRRI RRA+ + LG +P L+ AL EMG AYPEL + KL I E Sbjct: 300 IIPGNEGRGYVLRRIARRAIRHGYKLGARKPFFHTLVEALAVEMGEAYPELRRDKLRITE 359 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 L++E+ERF +T+ G+ +L+G L+ +++G+ AFKL+DT G PLD+ D+ RG Sbjct: 360 VLKAEEERFFQTIAHGMEILEGALASGAT--VIDGETAFKLHDTFGFPLDLTADVCRERG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D F+ A++ QR +AR S K+ L AT F GY+ L Sbjct: 418 VT-VDGAGFDAAMQRQREQAR-------SKAKFKMAQGLAYDGEATTFHGYEHL------ 463 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +C+ + V AI G V +A +G V VV D TPFYAE+GGQ+G Sbjct: 464 ------VCEH----------AKVSAIYVDGTPVTKAQAGDDVVVVLDHTPFYAESGGQVG 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G RL + D K + H A + G + +LV +D + R + NHSA Sbjct: 508 DRGELRNGRARLVVEDTVKIQAQVHGHQARIVEGEIEIGDTLVARVDAELRAKTIRNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H AL +LG HV Q GS +TP+ RFD H+ P+T+A++ +E VN I N Sbjct: 568 THLMHKALREVLGGHVQQKGSLVTPERTRFDFAHNAPVTAAQIAQVEALVNAEILANAAT 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 R M ++A GA L G KY + VRV+ + GG S LCGGTHV TG+I L Sbjct: 628 QARTMAIDEAQKLGAMMLFGEKYGETVRVLDI----GG--SRELCGGTHVQRTGDIGLFK 681 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I +E + AGIRR+EA+TG A ++L + L +A+ LKV+ V RV+ + E+ R Sbjct: 682 IAAEGGVAAGIRRVEAVTGDNALAYLQQLEGALGGVAATLKVTPAEVPARVDAVLEQLRA 741 Query: 770 L--QLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L ++ K +L D S + + ++ ++ D+K L+ MD L+ K++S Sbjct: 742 LDKEITALKGRLASAQGDELLASAVDVKGIKVLAATLAGADAKALRETMDKLKDKLKSAA 801 Query: 825 IMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I+L + K + VT DL+ + A +L A + GG GGG+P +A +GG + Sbjct: 802 IVLAAVDG-AKVQLAAGVTGDLVAGGKLKAGELVNFVAGQV-GGKGGGKPDLAMAGGTDA 859 Query: 883 NKADQAIAGVASFL 896 QA+A VA ++ Sbjct: 860 AALPQALASVAGWV 873 >gi|218780784|ref|YP_002432102.1| alanyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01] gi|218762168|gb|ACL04634.1| Alanyl-tRNA synthetase [Desulfatibacillum alkenivorans AK-01] Length = 875 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/897 (41%), Positives = 540/897 (60%), Gaps = 47/897 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R+ FLE+F+KN H ++ SSSL+P +DPTL+FTN+GMV FK F G++K Y T Sbjct: 4 NEVRSAFLEYFKKNDHRVVKSSSLVPQDDPTLLFTNAGMVQFKRTFLGEDKRDYTRAATS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI+L+WDLL +F L + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKELAIELSWDLLVNKFGLPADK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++++Y +D+EA LW+ G+ ++I+R+ DNFWSM +TGPCGPCSEI D+GE Sbjct: 124 LWVSIYLDDDEAGLLWRDKIGVPEERIVRLGEKDNFWSMGDTGPCGPCSEIHIDRGEAFG 183 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 P + + +RY+EIWNLVFMQ+ + + LP+ SIDTGMGLER+ ++LQ Sbjct: 184 CDSPDCAVGCDCDRYLEIWNLVFMQYNRDETGKMTPLPRPSIDTGMGLERICSILQNADT 243 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NY DLF + +++G K + V +VI DH R+++FL+ DGILP+NEGRGYV Sbjct: 244 NYGTDLFTPIFNRIGELSGKKLGDSKTDDVCMKVIADHSRAAAFLVGDGILPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRA+ Y R LG+ + + + A+C MG AYP+L + + I + +E+ RF + Sbjct: 304 LRRIMRRAIRYGRQLGFNKSFLHETVAAVCDSMGGAYPDLTEGRSFITNVIVNEENRFSE 363 Query: 361 TLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TLD+GL +L+ L + G+ EI +G+V FKLYDT+G P+DI++D++ +G+ +D Sbjct: 364 TLDKGLSVLNDALGEMEAKGEKEI-SGEVIFKLYDTYGFPVDIVEDVVRDKGIV-LDRDG 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F ++EQ+ ++R+ G+G + + SL + +F GY G C Sbjct: 422 FETRMKEQKEKSRSTVAFEGAG---EAFASLSSQGIKCEFQGYHGTSG-----------C 467 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 K V +V+ G+ V+EA +G V VV + TPFY E+GGQ+GD G D Sbjct: 468 SK------------VLLVVKDGKEVQEAQAGDAVSVVTEATPFYGESGGQMGDLGVITAD 515 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G+ L++ K G+ +H V +G + ++ L +D R+ + NH+ATHLLH AL Sbjct: 516 GLELEVVKTLKDPTGLIIHEGKVVKGKIAKGQNVDLKVDEAARQATARNHTATHLLHAAL 575 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++G HV Q GS + P+ LRFD TH P+T E IE VN+ I NL V T M+ + Sbjct: 576 REVVGDHVKQAGSLVGPERLRFDFTHFSPLTPEETVKIETLVNERIRDNLDVNTVEMDAD 635 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A SGA AL KY D VRVVS+E S LCGGTH +G++ IV ESS+ Sbjct: 636 QARESGAMALFEEKYGDTVRVVSMEG-----FSKELCGGTHTERSGDVGFFVIVGESSVA 690 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAK 776 AG+RRIEA+TG A ++ G L ++ LK + ++E++ + ++ + I+A Sbjct: 691 AGVRRIEALTGAGAVEYVHGLMSNLNKVSGLLKEKPETLPDKIEKLLAQNKQQEKEINAL 750 Query: 777 RKLQLNVEDLSC-HKIADVNFMSHIIS--EVDSK-ELKSVMDALQKKIQSGIIMLVGISK 832 + S +I +V I EVDS ++ + D + K+QSGI++L G Sbjct: 751 KAKIAAKASESVDDEIREVRGAKMIAKKVEVDSPAAMRDLADKFRDKLQSGIVVL-GSEV 809 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 KA ++++VT+DL +F A ++ + AK + GGGGGGRP MAQ+GG QA+ Sbjct: 810 NGKALLIVMVTKDLTKQFQAGNIIKHVAKEV-GGGGGGRPDMAQAGGSKPENLSQAM 865 >gi|239908964|ref|YP_002955706.1| alanyl-tRNA synthetase [Desulfovibrio magneticus RS-1] gi|239798831|dbj|BAH77820.1| alanyl-tRNA synthetase [Desulfovibrio magneticus RS-1] Length = 880 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/903 (42%), Positives = 530/903 (58%), Gaps = 50/903 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FLE+F GH+++ SS L+P DPTL+FTN+GMV FK +F GQ+KP Y Sbjct: 1 MMTATEIRAKFLEYFASKGHQVVASSPLVPREDPTLLFTNAGMVQFKKVFLGQDKPGYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE AI AW+ LT+ L Sbjct: 61 ATTSQKCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAITFAWEFLTEVIGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ RLY TVY +D+EA LWKKI+GLS ++I R+ DNFWSM +TGPCGPCSEI +D+G Sbjct: 121 DKSRLYATVYLDDDEAHGLWKKIAGLSDERIFRLGEKDNFWSMGDTGPCGPCSEIMYDRG 180 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E C P G+ + +RY+EIWNLVFMQF+Q R LP+ SIDTGMGLER+A V+ Sbjct: 181 EEVGCGPNCGIGTC-DCDRYLEIWNLVFMQFDQIEPGNRVALPRPSIDTGMGLERIAAVV 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295 Q +N+DIDLF+ +I ++ Q+ G+ Y N+ + RVI DH RS +FL+ADG++P+NE Sbjct: 240 QGVHSNFDIDLFQTIISSAAQIAGVTYGDNDEHDTALRVIGDHSRSVAFLLADGVMPSNE 299 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + +L+G ++P + + MG AYPEL+ ++ +E +R E+ Sbjct: 300 GRGYVLRRLIRRALRFGKLIGLSDPFLYKTAGVVVDVMGPAYPELVASREFMERVVREEE 359 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERFG TLD+GL +L L + + + G+ AFKLYDT+G PLDI+ D+ RG+A Sbjct: 360 ERFGVTLDKGLAILAEELDRMAAAGETTITGEFAFKLYDTYGFPLDIVNDVAGKRGMAA- 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D + + EQ++RA+ G G ++ L E ++F GY L Sbjct: 419 DEDGYRVCMAEQKARAKKAWKGSGETDPAVLFLELLESGMKSRFTGYTELTAK------- 471 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S + I +G+ VE ++G+ +V TPFY E+GGQ GD G Sbjct: 472 ---------------SRVNALISAEGQAVERLIAGETGYMVSAVTPFYGESGGQAGDVGT 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + K + HH V++G + + L +D R + NH+ THLL Sbjct: 517 VTTLTGDVAVLGTMKAGPELTAHHIQVQKGEILLDQEAELVVDAAVRAATARNHTCTHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS +TPD LRFD +H +T+ EL +ED VN I + PVV Sbjct: 577 HKALKNVLGGHVNQAGSLVTPDRLRFDFSHVSAMTAEELARVEDEVNAAILLDAPVVVEE 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL G KY D VRVV V S LCGGTH+ +TG+ YI+SE Sbjct: 637 LGIEAARAKGATALFGEKYGDVVRVVEVP-----GVSMELCGGTHIGATGQAGSFYILSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG RRIEA+TG A H+ +L +K G + RV+++ +E + L Sbjct: 692 SGVAAGTRRIEAVTGVNALRHVREMRGELDEALKTVKAKPGELGARVKKLLDEIKAL--- 748 Query: 774 HAKRKLQLNVE-------DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K K QL + DL +I V + + K ++ MD L+ K+ SG+ Sbjct: 749 -GKDKEQLAAKLASGQGRDLMAGLEEIGGVKVLCARVDAPSVKAMREAMDDLRSKLPSGV 807 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + + K S+++ V++DL DRF A L + A GG GGGRP MAQ+GG N Sbjct: 808 VAIASEQEGGKVSLIVAVSKDLHDRFTAPTLIK-DAAAAVGGSGGGRPDMAQAGGTNPAG 866 Query: 885 ADQ 887 D+ Sbjct: 867 IDE 869 >gi|294669536|ref|ZP_06734603.1| hypothetical protein NEIELOOT_01435 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308449|gb|EFE49692.1| hypothetical protein NEIELOOT_01435 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 873 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/915 (41%), Positives = 542/915 (59%), Gaps = 68/915 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +V+ DH+RS SFLIADG++P+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVVADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + I E L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIMEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ G ++ L+G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALTK-GSNK-LDGEIIFKLYDTYGFPYDLTADICRERNI-DL 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN+ +E QR+RARA K L T+F GY+ +D Sbjct: 419 DEEGFNREMEAQRARARAA-------QNFKANAQLDYTGADTEFTGYEK------RSQDT 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K++ A+ + E VEE +G+ VV +QTPFYAE+GGQ+GD G Sbjct: 466 KII-----------------ALYKGSEAVEELQAGEVGVVVLEQTPFYAESGGQVGDVGF 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + R ++ D QK + V G L+ ++ ID R + NHS THL+ Sbjct: 509 IVSGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + RFD++H++ I++ E+ +E VN I N+PV Sbjct: 569 HKALRDVLGTHVEQKGSLQNAELTRFDISHTQGISAEEIAEVERRVNAAIIANVPVKVET 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA SGA L G KY D VRV+++ G +S LCGGTHV+ TG+I I+SE Sbjct: 629 MSIEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVARTGDIGFFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AGIRR+EAITG A + Q+ +K++ + +K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANTKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL N +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L ++ A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFLK 897 K + + V ++K Sbjct: 856 VKLPEMLGSVEDWVK 870 >gi|225023233|ref|ZP_03712425.1| hypothetical protein EIKCOROL_00085 [Eikenella corrodens ATCC 23834] gi|224944057|gb|EEG25266.1| hypothetical protein EIKCOROL_00085 [Eikenella corrodens ATCC 23834] Length = 873 Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/902 (41%), Positives = 535/902 (59%), Gaps = 68/902 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYNRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +V+ DH+RS SFLIADG++P+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVVADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ G ++ L+G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALTK-GSNK-LDGEIIFKLYDTYGFPYDLTADICRERNI-NL 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN+ +E QR+RARA K L T+F GY+ +D Sbjct: 419 DEDGFNREMEAQRARARAAQ-------NFKANAQLDYTGADTEFTGYEK------RSQDT 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K++ A+ + E V+E G+ VV +QTPFYAE+GGQ+GD G Sbjct: 466 KII-----------------ALYKGSEAVDELQVGEAGVVVLEQTPFYAESGGQVGDVGF 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK + V G L+ ++ ID R + NHS THL+ Sbjct: 509 IFAGENRFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDNIMRNHSVTHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + RFD++H + I + E+ +E VN I N+PV Sbjct: 569 HKALRDVLGTHVEQKGSLQNAELTRFDISHPQGINAEEIAEVERRVNAAIIANVPVKVET 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA SGA L G KY D VRV+++ G +S+ LCGGTHV+ TG+I I+SE Sbjct: 629 MSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AGIRR+EAITG A + Q+ +K++ + +K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGIRRVEAITGLAALAWAQNQESLMKNIIAEVKAQTEKDVLAKIQANAANAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL N +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L ++ A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NK 884 ++ Sbjct: 856 SQ 857 >gi|237755762|ref|ZP_04584366.1| alanyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692072|gb|EEP61076.1| alanyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense SS-5] Length = 876 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/895 (41%), Positives = 546/895 (61%), Gaps = 51/895 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +FL++F+ GH ++ S+S+IP NDPTL+F N+GMVPFKN+F G E+ Y+ + QK Sbjct: 9 IRQSFLKYFESKGHTIVKSASIIPENDPTLLFVNAGMVPFKNVFLGLEERPYKRAASCQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 R GKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ + + +L Sbjct: 69 VFRVSGKHNDLENVGYTPRHHTFFEMLGNFSFGDYFKKEAIEFAWEYLTEHLKIPKEKLL 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++V++ED+EAF++W K GL KI R+ DNFWSM +TGPCGP SEI++D+GE G Sbjct: 129 VSVFEEDDEAFEIWNKHIGLDESKIKRMGYKDNFWSMGDTGPCGPSSEIYYDRGEKF-GS 187 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 +E+ RY+EIWNLVFMQ+ + K LP SIDTGMGLER+A+VLQ +NYD Sbjct: 188 PEFGAEDDFRYLEIWNLVFMQYNRDEKGVLHPLPNPSIDTGMGLERIASVLQGVDSNYDT 247 Query: 247 DLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 DLFK +IQ +E+V+G +Y N + + RVI DHLR+ +FLI+DG+LPANEGRGYVLRRI Sbjct: 248 DLFKPIIQFAEEVSGKEYGKNEKDDIAMRVIADHLRAITFLISDGVLPANEGRGYVLRRI 307 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ Y + L +P + + + +M +AYPELIQ + I+ +SE+E+F KTL R Sbjct: 308 IRRALRYGKNLSIEKPFLYEGVDVVIEKMKTAYPELIQNRSFIKTITKSEEEKFIKTLKR 367 Query: 365 GLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 + +L ++ K+ L G+ AFKLYDT+G P+D+M++IL G D+I F+ L Sbjct: 368 SMDILYQMIEQARKENRRHLTGEEAFKLYDTYGFPIDLMEEILKDEGFT-FDLIEFHNLL 426 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EEQ+ RAR S S + ++ +LK K QF+GY+ L E+ KVL Sbjct: 427 EEQKERARK-SWKSQSKEIKPVYLTLKNKLPENQFVGYETLTS-----ENSKVL------ 474 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 AI++ ++V+ A G+ VE+V D TPFY E GGQ+GD G GD + Sbjct: 475 -----------AIIKGDQLVDTAKEGEDVEIVLDITPFYPEKGGQVGDRGIIEGDEFLFE 523 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D Q +G+ VH V G ++ + +D + R + +H+ATHLLH AL +LG Sbjct: 524 VLDTQTPVDGLIVHKGKVLFGSVKEGAYVRAKVDKERRENIMRHHTATHLLHAALRNVLG 583 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS ++ + LRFD TH + +T ELK++E+ VN I +N VV + M E+A+ S Sbjct: 584 DHVKQAGSLVSDEYLRFDFTHFESMTDEELKAVEELVNREIMKNEEVVCQEMQYEEALKS 643 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A+ KY D VRV+S G+ S LCGGTHV TG+I I+SES++ +G RR Sbjct: 644 GAMAIFEEKYADVVRVIS-----AGI-SKELCGGTHVKRTGDIGYFKILSESAVSSGTRR 697 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLIHAKRK 778 IEA+ G +A + + +K L+ L + ++ RV +I E+ R+++ + K Sbjct: 698 IEAVAGIKAVEKGLQEHYIIKDLSRLLTAKEDQLLDRVLKLQNQIKEKEREIENLRKKLA 757 Query: 779 L-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 L LN+ + K+A V+ + ++ EL+ + D L++K+ +I++ E Sbjct: 758 LSNINENLNIIEKEGFKVAYVS-----VENLNPNELREIADHLRQKLGKSVILVASKDAE 812 Query: 834 K-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 K K + ++ V+++L + + A D+ + GG GGGRP AQ G + +K Q Sbjct: 813 KQKVNFVVAVSKELSENYKAGDIVK-KVASAVGGSGGGRPDFAQGGINDTSKLSQ 866 >gi|261364444|ref|ZP_05977327.1| alanine--tRNA ligase [Neisseria mucosa ATCC 25996] gi|288567357|gb|EFC88917.1| alanine--tRNA ligase [Neisseria mucosa ATCC 25996] Length = 873 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/916 (41%), Positives = 542/916 (59%), Gaps = 68/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT +L Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +V+ DH+RS SFLIADG++P+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVVADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ G ++ L+G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALTK-GSNK-LDGEIIFKLYDTYGFPYDLTADICRERNI-DL 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN+ +E QR+RARA K L T+F GY+ ++ Sbjct: 419 DEEGFNREMEAQRARARAA-------QNFKANAQLDYTGADTEFTGYEK------RSQET 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K++ A+ + E V+E +G+ VV +QTPFYAE+GGQ+GD G Sbjct: 466 KII-----------------ALYKGSEAVDELQAGEAGVVVLEQTPFYAESGGQVGDVGF 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK + V G L+ ++ ID R + NHS THL+ Sbjct: 509 IFAGENRFRVEDTQKIKAAVHGQFGSVVSGRLKVGDAVSAEIDNDIRNSIMRNHSVTHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + RFD++H + I++ E+ +E VN I N+PV Sbjct: 569 HKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKVET 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA SGA L G KY D VRV+++ G +S LCGGTHV+ TG+I I+SE Sbjct: 629 MSIEDAQKSGAVMLFGEKYGDFVRVITM-----GDYSIELCGGTHVARTGDIGFFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AGIRR+EAITG A + Q+ +K++ + +K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGIRRVEAITGLAALAWAQNQESLVKNIIAEVKAQTEKDVLAKIQANAANAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL N +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L ++ A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTNKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFLKK 898 K + + V ++++ Sbjct: 856 AKLPEMLGSVEGWVRE 871 >gi|156743640|ref|YP_001433769.1| alanyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941] gi|205830195|sp|A7NQA5|SYA_ROSCS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|156234968|gb|ABU59751.1| alanyl-tRNA synthetase [Roseiflexus castenholzii DSM 13941] Length = 905 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/911 (40%), Positives = 527/911 (57%), Gaps = 71/911 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 ++IR FL FF++ GH +PSSSLIP NDPTL+FTNSGMV FK+ F G E+ Y TT Sbjct: 7 AAIREQFLRFFEERGHVRVPSSSLIPGNDPTLLFTNSGMVQFKDTFLGLEQRPYTRATTA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI +AW+LLTK FDL R Sbjct: 67 QKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIPMAWELLTKVFDLPVER 126 Query: 125 LYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L+ TV++ D+EA +LW +G ++++R DNFW MA+ GPCGPCSEI Sbjct: 127 LWFTVFEGDDEVPPDDEAAQLWVA-AGADPERVLRFGRKDNFWVMADAGPCGPCSEITIF 185 Query: 179 QGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ + G + + Y+EIWN VFMQFE+ Q L + S+DTGMGLERMA V+ Sbjct: 186 IGDDLKEMSAKGVNSDDPNYVEIWNNVFMQFERSTMQP---LHRPSVDTGMGLERMAMVM 242 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 Q + YD DLF LI+ + G Y ++ R + DH R+ +FLIADG+LP N Sbjct: 243 QGVHSTYDTDLFIPLIERQLALLGADEPTYRA-HVAPFRAVADHSRAVAFLIADGVLPGN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GR YVLRRI+RRA+ R +G+ +P + + + +MG+ YPEL + I ET+ E Sbjct: 302 TGRSYVLRRILRRAVYQGRTVGFEKPFLADVAAVVIEQMGAVYPELRERADFILETVDLE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + +F +TL G+ +L V+ + ++ GD AF L DT+G PLD+ Q I GL Sbjct: 362 ERQFLRTLSGGVSILKSVIERVRAVGGTVIPGDDAFTLKDTYGFPLDLTQKIAAEHGLT- 420 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D + + +EEQR+R R + + W + T+F GY + G Sbjct: 421 VDEAGYERRMEEQRARGR-RAAQFKRAADAEAWADI--DLPPTRFTGYLGVSG------- 470 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V+A++ G+ V EAV+GQ+V++ D TPFYAE+GGQ+GDTG Sbjct: 471 ----------------SGTVQALIVAGDQVAEAVAGQQVQIALDSTPFYAESGGQIGDTG 514 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 IG R +I DVQ+ G+ VH+ +VE G + ++ +D R + +H+ATHL Sbjct: 515 VLIGPRGRARIDDVQRPVPGVIVHYGVVEEGAIAVYETVEAQVDSVRRAAIMRSHTATHL 574 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG H +Q GS + PD LRFD TH++P+T +L+ IE VN I + PV + Sbjct: 575 LHRALRDVLGEHAAQAGSLVAPDRLRFDFTHTRPVTPEQLREIERRVNAWIRADTPVAWQ 634 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSV---------------EYEDGGVH--SSALCG 695 + + A+ +GA AL G KY D VR+V++ E + G S LCG Sbjct: 635 ELPYQAALEAGAIALFGEKYGDVVRMVTIGCVNGNDALSPAAIAERQRAGFRMCSRELCG 694 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV +GEI L IVSESS+ AG+RRIEA+TG A + Q L ++A+ + Sbjct: 695 GTHVGRSGEIGLFRIVSESSVAAGVRRIEALTGAEAEQWVDAQIATLHNIAARVGAPPSQ 754 Query: 756 VVGRVE----EIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKEL 809 + R+E E+ + R L +HA R+ + N+E L + + D+ F++ + D+ L Sbjct: 755 LGERIEALLAELKQRQRALDELHA-RQARSNLEGLLANVQAVGDIRFLAAQVEAPDTARL 813 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGG 868 + + D L+ K+ SG+++L + + KA +L + T DL R +A +L + A ++ GG G Sbjct: 814 REMGDWLRDKLGSGVVVLAAVI-DGKAQILAMATPDLAGRRIHAGNLVKALAPIV-GGSG 871 Query: 869 GGRPHMAQSGG 879 GGRP MAQ+GG Sbjct: 872 GGRPDMAQAGG 882 >gi|308274548|emb|CBX31147.1| Alanyl-tRNA synthetase [uncultured Desulfobacterium sp.] Length = 875 Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/899 (42%), Positives = 546/899 (60%), Gaps = 45/899 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FLE+F+K+ H+++ SSSL+P DPTL+FTN+GMVPFK F G+EK Y + Sbjct: 4 SDIRRQFLEYFKKHDHQIVRSSSLVPVEDPTLLFTNAGMVPFKRTFLGEEKRGYVRAASS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE+A++ AWDLL F + + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEKAVEYAWDLLVTGFGIPVDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+++VY +D++A +W K +G+S D+I+R DNFWSM +TGPCGPCSEI D+GE Sbjct: 124 LWVSVYLDDDQAHDIWHKNAGVSEDRIVRFGDKDNFWSMGDTGPCGPCSEILIDRGEKYG 183 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P E +RY+EIWNLVFMQFE+ + LP+ SIDTGMGLER+A+V+Q Sbjct: 184 CGKPDCKVGCECDRYLEIWNLVFMQFERDASGKMTPLPRPSIDTGMGLERIASVVQNVPT 243 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NYD DL +I+ +EQ++ + +++ V +VI DH R+++FLI DGILP+NEGRGYV Sbjct: 244 NYDTDLIIPIIRKTEQLSQKRLGDSSVSDVAMKVIADHSRAAAFLICDGILPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRA+ Y R +G +P + + M AYPE A+ I +++E+ RF + Sbjct: 304 LRRIMRRAIRYGRNIGLVKPFLHETSQVVIETMKDAYPEFEGAEAFISNVIKNEEARFSE 363 Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLD GL LL+ LS + ++GD+ FKLYDT+G P+D+++D++ L +D+ F Sbjct: 364 TLDNGLRLLNDTLSEIKAKGLNTISGDIIFKLYDTYGFPVDVVRDVVRDENLF-LDMDGF 422 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 N A++ Q+ ++R S+ SG TE + +L +F+GYD D KVL Sbjct: 423 NAAMKNQKEKSR--SVATFSGITEA-YKNLSANRLIPEFVGYDK------QISDSKVLL- 472 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 IV+ G+ EAV+G +E+V ++TPFY E+GGQ GD+G Sbjct: 473 ----------------IVKDGKETAEAVAGSDIEIVTEETPFYGESGGQTGDSGIISSSN 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++++I D K A GI +H + G + S+ L++D + R + NH+ATH+LH L Sbjct: 517 LKIEIADTIKDAAGIIIHKGKIITGTVSKGQSVTLSVDNKRRSATANNHTATHILHFILK 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV Q GS ++ + LRFD TH + S L+ IE VN+ I +N M+ E Sbjct: 577 RILGDHVKQAGSFVSSERLRFDFTHFSQVDSDTLEKIETLVNERIRENALTCIEEMDAEK 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A SGA AL KY D VRV+S+ G S LCGGTH TG I L I++ESS+ + Sbjct: 637 AFKSGATALFEEKYGDVVRVISL-----GEFSKELCGGTHTDRTGNIGLFKIIAESSVAS 691 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEYRKLQLIHAK 776 G+RRIEA+TG A +++ + L A +K + +VE+ I ++ + +L K Sbjct: 692 GVRRIEALTGAAALNYIQQNMKTLNETARIVKEKPEALPQKVEKMLIQQKAYEKELEKTK 751 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKE 833 K+ D ++I +N + + +V + L+ + D + KI+SGI++L G + Sbjct: 752 AKIASRAADDMDNEIKSINGVKVLAKKVLADNPAALRDLADKFRDKIKSGIVVL-GSAAG 810 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K ++++VT+DL +++A ++ + + GGGGGGRP MAQ+GG K D+A+AG Sbjct: 811 SKVFLIVIVTKDLAGKYHAGNIVK-QVSSVVGGGGGGRPDMAQAGGSIPEKLDEALAGA 868 >gi|221066868|ref|ZP_03542973.1| alanyl-tRNA synthetase [Comamonas testosteroni KF-1] gi|220711891|gb|EED67259.1| alanyl-tRNA synthetase [Comamonas testosteroni KF-1] Length = 874 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/845 (42%), Positives = 505/845 (59%), Gaps = 54/845 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+F+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 7 SVADIRKTFLDFYASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ +I+ W+LLTK F L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESIEWGWELLTKVFGLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L TVY ED+EA+ +WK + GL A++IIRI N DNFW MA+TGPCGPCSEI Sbjct: 127 EKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGDNKGGKYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PGS EE G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 187 FYDHGEHIAGGPPGSPEEDGDRFIEIWNHVFMQFDMKEDGSVVKLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF+ LI+A+ + T E + + +VI DH+R++SFL++DG++P+N Sbjct: 247 AILQHVHSNYEIDLFQALIKAAGRET--HTEDLSTPSLKVIADHIRATSFLVSDGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I L++E Sbjct: 305 EGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVADLVVQMGDAYPKLKEQQAHITSVLKAE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G ++L GDVAFKL+DT+G PLD+ D+ RG+ +D Sbjct: 365 EERFFETLANGMEILDSALA--GDVKVLPGDVAFKLHDTYGFPLDLSNDVARERGVT-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A++ Q+ ARA K+ +L+ F+GYD L E K Sbjct: 422 EAGFNAAMQHQKETARA-------AGKFKMDRALEYTGQGNTFVGYDKL------AESAK 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 469 IV-----------------ALYADGVSVSELKAGQNGVVVLDTTPFYAESGGQVGDQGVI 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G R + D K +F HH ++E G L+ ++ +D R NHS TH++H Sbjct: 512 AAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVGDAVEAQVDTAVRAATMRNHSVTHIMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H+ P+T+ +++ IE VN + N P R+M Sbjct: 572 KALREVLGGHVQQKGSLVNAERTRFDFAHNAPVTAEQIREIEARVNAEVLANTPTDARVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHVS TG+I L +V ES Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIG------SSRELCGGTHVSRTGDIGLFKVVGES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIE ITG+ A ++L + + A+ K + R+ ++ + L ++ Sbjct: 686 GVAAGVRRIEGITGENALAYLQSLESTVDQAAAAFKAPAAELTNRIGGALDQIKALEKEI 745 Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + ADVN ++ + D+K L+ MD L+ K+ + +I+L Sbjct: 746 AALKGKLASSQGDELATQAADVNGVKVLAAKLEGADAKTLRDTMDKLKDKLGAAVIVLAA 805 Query: 830 ISKEK 834 + +K Sbjct: 806 VDGDK 810 >gi|325140755|gb|EGC63269.1| alanyl-tRNA synthetase [Neisseria meningitidis CU385] Length = 881 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/914 (41%), Positives = 533/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 10 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 70 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLER+ Sbjct: 190 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERI 249 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 368 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L GK L G++ FKLYDT+G P D+ DI R + Sbjct: 369 EESRFAQTLETGMALLENALVKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 469 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 516 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 576 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 635 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY + VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 636 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 805 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862 Query: 883 NKADQAIAGVASFL 896 +K + V ++ Sbjct: 863 DKLPAVLDSVKDWV 876 >gi|116623844|ref|YP_826000.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076] gi|122253309|sp|Q01XA0|SYA_SOLUE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116227006|gb|ABJ85715.1| alanyl-tRNA synthetase [Candidatus Solibacter usitatus Ellin6076] Length = 878 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/911 (41%), Positives = 535/911 (58%), Gaps = 71/911 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF + GH ++ SSSL+P NDPTL+FTN+GM FK++F GQEK Y + QK Sbjct: 6 IRQRFLDFFAERGHRVVRSSSLVPANDPTLLFTNAGMNQFKDVFLGQEKRDYVRAASSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AWDL+TK++ L + +LY Sbjct: 66 CVRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKADAIAYAWDLITKDYGLPKEKLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TV+ ED+EA +LW+K++G+ +I R+ DNFW M ETGPCGPCSEI +D G I Sbjct: 126 VTVFREDDEAEELWQKVTGIPKSRIFRLDEKDNFWQMGETGPCGPCSEIHYDLG--IEAA 183 Query: 187 LPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 PG E G R++EIWNLVFMQ+++ + LP+ SIDTGMGLER+A +LQ K Sbjct: 184 EPGREHEQFPDDAGGRFVEIWNLVFMQYDRDQSGKLNPLPRPSIDTGMGLERIAAILQGK 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 NYD DL +I+ + ++ G+ + + R++ DH R++ FLI DG++P+NEGRG Sbjct: 244 ITNYDTDLIYPIIEHAAEIFGVTPGADTRTDTVLRIVADHARATEFLIHDGVVPSNEGRG 303 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+IMRRA+ R++G +P + L + M YPEL+++ + + E+ R+ Sbjct: 304 YVLRKIMRRALRNVRMIGIEDPFLYKLTGFVGELMKGPYPELLESIQRVARVTKDEEHRY 363 Query: 359 GKT-LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 T L V D + S G + G ++FKLYDT+GL LD +D+ GLA ID S Sbjct: 364 ATTFLVAERVFNDAIKSIQGN--TIPGALSFKLYDTYGLALDEQEDMAREHGLA-IDRES 420 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F+ +E+QR RARA G + L E+ G T+F+GY L + Sbjct: 421 FDTEMEQQRERARASWKGAEKAAVTPAYQKLVEQ-GRTKFLGYSELEAA----------- 468 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CA 534 S +V IV + E V++ +G K E+V DQTPFYAE+GGQ+GD G A Sbjct: 469 -----------SRVVGLIVDK-ESVQQVPAGAKAELVLDQTPFYAESGGQVGDHGILYSA 516 Query: 535 IGDGIRLQITDVQKK---AEGIFVHH-----AIVERGILRTEMSLVLTIDYQNRRQLSIN 586 G+ ++ DV+ G+ VH I LR E+++ L R N Sbjct: 517 AGE----KVADVETAFPGVPGLTVHRIAALAPIAVGDTLRAEVAVPL------RDATRRN 566 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH +L T+LG HV Q GS + P LRFD TH + AEL+ +E +N I +N Sbjct: 567 HTATHLLHASLRTVLGKHVKQAGSIVDPGRLRFDFTHYAGLDHAELEEVERLMNQEILRN 626 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T I+ E AIA+GA AL G KY D+VRVVSV S LCGGTHV TG+I Sbjct: 627 TAVQTDILPLEQAIATGAMALFGEKYGDQVRVVSVPG-----FSRELCGGTHVQRTGDIG 681 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + IV E SI AG+RRIEAITG+ A +K +A +KVS+ ++ +E++ Sbjct: 682 VAKIVYEGSISAGVRRIEAITGEAALRQYQETSGAVKRVADMVKVSEPALIEHIEKMIAN 741 Query: 767 YRKL--QLIHAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 R L Q+ K KL + D I V ++ + +D +++++ D+L+ K + Sbjct: 742 ERALEKQVEQLKNKLAQAAVGSLDAEARTIKGVKVVAAHLDGMDRAQMRALADSLRNKWK 801 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++L + ++ +++ VT+DL + +A LA A+ + GG GGGRP MA++GG + Sbjct: 802 SAVVVLASV-EDGNVAIISAVTKDLTAKVHAGKLASSLAQAV-GGKGGGRPDMAEAGGKD 859 Query: 882 GNKADQAIAGV 892 + D+A+ V Sbjct: 860 PSCLDEALTAV 870 >gi|240122334|ref|ZP_04735290.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332] gi|268680920|ref|ZP_06147782.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332] gi|268621204|gb|EEZ53604.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID332] Length = 874 Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 856 DKLPEMLASAEGWL 869 >gi|260441692|ref|ZP_05795508.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2] Length = 874 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 856 DKLPEMLASAEGWL 869 >gi|291045073|ref|ZP_06570781.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2] gi|291011076|gb|EFE03073.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI2] Length = 881 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 10 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 70 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 190 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 368 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 369 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 469 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 516 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 576 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 635 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 636 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 805 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 863 DKLPEMLASAEGWL 876 >gi|56416520|ref|YP_153594.1| alanyl-tRNA synthetase [Anaplasma marginale str. St. Maries] gi|81599193|sp|Q5PBJ0|SYA_ANAMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56387752|gb|AAV86339.1| alanyl-tRNA synthetase [Anaplasma marginale str. St. Maries] Length = 882 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/769 (46%), Positives = 468/769 (60%), Gaps = 48/769 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61 ++SSIR FLEFF KNGH+L S+ L+ D +L+FT++GMVPFK FT G + Sbjct: 5 SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW +T+E L Sbjct: 65 VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ITVY ED+EAF +WKKI+G D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184 Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS + +G R+ E+WNLVFMQF + E LP IDTGMGLER A V+Q Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYD DLFK +I+ S+ V G +N + HRVI DH+R+++FLI++G+ P NEGR YV Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSP---DNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355 LRRI+RRA+ YA L + + +LP L E MG AYPEL++ + I TLRSE Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E F TL RG+ LL+ + L ++L GDVAFKLYDT G PLDI DI RGL D Sbjct: 362 EGFVDTLRRGMALLEKEIGGLSPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ + EQ++R+R H +G G + ++W L+ ++ T+F+GYD Sbjct: 421 EGFNKGMGEQKARSRKHWVGSGEDASHRLWEELQAQHKNTRFVGYD-------------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 C + V +I + G V+ SG+K ++ D +PFYAE+GGQ GD G Sbjct: 467 CCS---------TKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSIT 517 Query: 536 G-------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G G + +KA + +H + G+ ++ ID R +L NHS Sbjct: 518 GVSGVKNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH L T + ++ Q GS + D LRFD ++ +T ++ IE VN I N P Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQIALIEREVNRRIMSNKP 637 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V+T + E A+ GA AL G KY++ VRVVS+ S LCGGTHV TG+I Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIGA 691 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 IVSES I G+RRIEAITGQ L + L ++ L V G V Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEV 740 >gi|316983845|gb|EFV62825.1| alanyl-tRNA synthetase [Neisseria meningitidis H44/76] gi|325199806|gb|ADY95261.1| alanyl-tRNA synthetase [Neisseria meningitidis H44/76] Length = 874 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/914 (41%), Positives = 533/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLER+ Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALVKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY + VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFL 896 +K + V ++ Sbjct: 856 DKLPAVLDSVKDWV 869 >gi|240079700|ref|ZP_04724243.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19] Length = 874 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 856 DKLPEMLASAEGWL 869 >gi|268595847|ref|ZP_06130014.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19] gi|268549635|gb|EEZ44654.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA19] Length = 881 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 10 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 70 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 190 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 368 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 369 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 469 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 516 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 576 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 635 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 636 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 805 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 863 DKLPEMLASAEGWL 876 >gi|134093868|ref|YP_001098943.1| alanyl-tRNA synthetase [Herminiimonas arsenicoxydans] gi|205830068|sp|A4G2S9|SYA_HERAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|133737771|emb|CAL60816.1| alanyl-tRNA synthetase [Herminiimonas arsenicoxydans] Length = 869 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/906 (41%), Positives = 535/906 (59%), Gaps = 58/906 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FF+ GH ++ SS L+P NDPTLMFTNSGMV FK++F G++K Y T+V Sbjct: 4 SEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYVRATSV 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ +W+LLTK + L + Sbjct: 64 QACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALMWSWELLTKVYGLPGDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L TVY ED+EA+ +W K GL +++IRI N DNFW MA+TGPCGPCSEIF+ Sbjct: 124 LLATVYIEDQEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEIFY 183 Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G I GG PGS E+G+RYIEIWN VFMQF+ LP +DTGMGLER+A + Sbjct: 184 DHGPHIAGGPPGSPDEDGDRYIEIWNNVFMQFDMAEDGTVKPLPAPCVDTGMGLERLAAI 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+ID F LI+A+ + T K NN + +VI DH+R+++FL+ADG++P+NEG Sbjct: 244 LQGVHSNYEIDTFAALIKAAGRETNTKDLTNNSL--KVIADHIRATAFLVADGVIPSNEG 301 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYV RRI+RRA+ + LG +P L+ L +MG AYP+L I E L++E+E Sbjct: 302 RGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLQADAQRITEVLKAEEE 361 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF +TL G+ +LD L+ G ++L G+VAFKL+DT G PLD+ D+ C +D Sbjct: 362 RFFETLANGMEILDAALA--GGVKVLPGEVAFKLHDTFGFPLDLSADV-CREAGVSVDEA 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKV 475 F A+E+Q++ RA G E+ A ++ G ++ G + ++ED V Sbjct: 419 GFAAAMEKQKAAGRA----AGKFKMER----------AVEYTGAGNVFTGYENLQEDATV 464 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + +G V++ GQ VV D TPFYAE+GGQ+GD G Sbjct: 465 V-----------------GLYFEGTAVQQLKEGQAGIVVLDTTPFYAESGGQVGDQGFVS 507 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 +G++ + D QK ++ HH + +G L+ + +D R NHS TH++H Sbjct: 508 AEGVQFGVEDTQKIKADVYGHHGVQTQGTLKVGDKVQAAVDGARRAATMRNHSVTHIMHK 567 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + + RFD H+ P+T ++ IE VN I N R+M+ Sbjct: 568 ALREVLGEHVQQKGSLVDAEKTRFDFAHNAPVTHEQILEIEKRVNAEILANSDTQARVMD 627 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A +GA L G KY + VRV+ + S LCGGTHVS TG+I L +V ES Sbjct: 628 IESAQKTGAMMLFGEKYGETVRVLDIG------SSRELCGGTHVSRTGDIGLFKVVGESG 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IH 774 + AG+RRIEAITG A S+ + + S A+ LK + R+ ++ ++ + L+ I+ Sbjct: 682 VAAGVRRIEAITGANALSYFQDLEATVHSAAATLKSPPAELQPRLAQVLDQVKTLEREIN 741 Query: 775 A-KRKLQLNVED--LS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 A K KL + D LS +I + ++ + D+ L++ MD L+ K+++ I+L + Sbjct: 742 ALKGKLASSQGDELLSQAVEIKGIKVLAAKLENADAGTLRTTMDTLKDKLKTAAIVLAAV 801 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + K S++ VT D + A +L A+ + GG GGGR MAQ+GG + + A+ Sbjct: 802 N-DGKVSLIAGVTADATGKVKAGELVNFVAQQV-GGKGGGRADMAQAGGTDASGLPAALQ 859 Query: 891 GVASFL 896 GVA+++ Sbjct: 860 GVAAWV 865 >gi|116749953|ref|YP_846640.1| alanyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB] gi|205830235|sp|A0LLA3|SYA_SYNFM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116699017|gb|ABK18205.1| alanyl-tRNA synthetase [Syntrophobacter fumaroxidans MPOB] Length = 885 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/913 (41%), Positives = 530/913 (58%), Gaps = 66/913 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL+FF + GH ++ SSS+IP +DP+L+FTN+GMV FK F G+EK Y Sbjct: 2 KASEIRKAFLDFFAQRGHSVVKSSSVIPHDDPSLLFTNAGMVQFKRTFLGEEKRPYNRAA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+RAGGKHNDL+NVGRT RHHTFFEMLGNFSFG YFKE A++ AW LT++ L + Sbjct: 62 TSQKCMRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAVEYAWRFLTEDMGLPR 121 Query: 123 RRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 +LY T+++ DEEA W + L AD+I+ T DNFWSM +TGPCGPCSE Sbjct: 122 EKLYATIHEGDSEMRLGPDEEARGFWARY--LPADRILTFPTKDNFWSMGDTGPCGPCSE 179 Query: 175 IFFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 I DQG + G P + +R++E+WNLVFMQF ++ LPK SIDTGMGLER Sbjct: 180 ILIDQGAHVGCGKPDCRPGCDCDRFLELWNLVFMQFNRKEDGTMEPLPKPSIDTGMGLER 239 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 +A V+Q+ +NYD DLF + +++G +Y + V+ +VI DH R+++FLI DG Sbjct: 240 VAAVIQKVPSNYDTDLFAPMRAKIAELSGYRYGTDPEKDVSVKVIADHGRAAAFLIGDGA 299 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ + R LG P + + A+ M AYPEL++++ I Sbjct: 300 LPSNEGRGYVLRRVLRRALRHGRFLGLDRPFLSEVAVAVMESMQDAYPELLESRNFITRV 359 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCA 407 + +E+ERF +TLD GL LL + L +DE + G + FKLYDT+G P+DI+ D+ A Sbjct: 360 ILNEEERFNETLDNGLRLLQNEIRRL-RDEGAGTIPGALIFKLYDTYGFPIDIITDM--A 416 Query: 408 RGLA-GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 R L +D F +E+Q+ ++R H G G + + L + +T+F+GYD L Sbjct: 417 RDLDFKVDEAGFADLMEKQKEQSRMHWKGSGEREVSEAYRQLSAEGVSTRFVGYDTL--- 473 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 S + A+V+ G+ VEEA +G VEVV +TPFY AGG Sbjct: 474 --------------------SAQSTIAALVRDGQAVEEAPAGTDVEVVTSETPFYGAAGG 513 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G +G R+ ++D K + VH VE G LR ++ L +D R +++ Sbjct: 514 QVGDQGVIVGPSSRVIVSDTLKLPGDLIVHVGKVESGRLRVGETVRLEVDQALRGDTALH 573 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH L +LG HV Q GS + PD LRFD TH I+ EL IE VN+ I N Sbjct: 574 HTATHLLHSVLRRVLGDHVKQAGSMVAPDRLRFDFTHFAAISRDELAEIERLVNEQIRVN 633 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 + R MN ++A+ +GA AL KY DRVR+V + S LCGGTH TG+I Sbjct: 634 RDLQVREMNLDEALKTGAMALFEEKYGDRVRMVEIPG-----FSRELCGGTHTHRTGDIG 688 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L + E SI +G+RRIEA+ G+RA +L Q L A LK V RVE++ Sbjct: 689 LFVVTQEMSIASGVRRIEALAGRRALDYLGRQQSVLHQAAGLLKAGPFEVAERVEKLLAN 748 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDAL 816 ++++ ++L+ L+ + AD V + + D K L+ + D Sbjct: 749 QKQME-----KELEALKSSLTSKRSADLLEQAEEVGGVKVLVMRVEADDPKALREMNDRF 803 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++++ SG+ +L G + KA +L+ VT DL R +A +L + K + GG GGGRP MAQ Sbjct: 804 KERLSSGVTVL-GAHQGDKAFLLVGVTPDLTSRVHAGNLIKEIVKTI-GGSGGGRPDMAQ 861 Query: 877 SGGPNGNKADQAI 889 +GG K A+ Sbjct: 862 AGGNRPEKLQDAL 874 >gi|15677445|ref|NP_274601.1| alanyl-tRNA synthetase [Neisseria meningitidis MC58] gi|20532266|sp|Q9JYG6|SYA_NEIMB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|7226845|gb|AAF41948.1| alanyl-tRNA synthetase [Neisseria meningitidis MC58] Length = 874 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/914 (41%), Positives = 533/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLER+ Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFRMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVKEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALVKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + GE V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGEQVNELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFSGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 569 HKALRDVLGRHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA +GA L G KY + VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTGAMMLFGEKYGEEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKPLTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFL 896 +K + V ++ Sbjct: 856 DKLPAVLDSVKDWV 869 >gi|194097831|ref|YP_002000876.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945] gi|239998317|ref|ZP_04718241.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02] gi|240014513|ref|ZP_04721426.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae DGI18] gi|240113728|ref|ZP_04728218.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11] gi|240116471|ref|ZP_04730533.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18] gi|240121035|ref|ZP_04733997.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID24-1] gi|240125067|ref|ZP_04737953.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679] gi|254494482|ref|ZP_05107653.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 1291] gi|268599798|ref|ZP_06133965.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11] gi|268602141|ref|ZP_06136308.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18] gi|268683663|ref|ZP_06150525.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679] gi|193933121|gb|ACF28945.1| AlaS [Neisseria gonorrhoeae NCCP11945] gi|226513522|gb|EEH62867.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 1291] gi|268583929|gb|EEZ48605.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae MS11] gi|268586272|gb|EEZ50948.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID18] gi|268623947|gb|EEZ56347.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-92-679] Length = 874 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 856 DKLPEMLASAEGWL 869 >gi|255065962|ref|ZP_05317817.1| alanine--tRNA ligase [Neisseria sicca ATCC 29256] gi|255049873|gb|EET45337.1| alanine--tRNA ligase [Neisseria sicca ATCC 29256] Length = 874 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/914 (41%), Positives = 539/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYNRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +V+ DH+RS SFLIADG++P+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVVADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ G ++ L+G++ FKLYDT+G P D+ DI R + + Sbjct: 362 EESRFAQTLETGMALLENALTK-GSNK-LDGEIIFKLYDTYGFPYDLTADICRERNI-DL 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D FN+ +E QR+RARA K L T+F GY+ +D Sbjct: 419 DEEGFNREMEAQRARARAA-------QNFKANAQLDYAGADTEFTGYEK------RSQDT 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K++ A+ + E V+E +G+ VV +QTPFYAE+GGQ+GD G Sbjct: 466 KII-----------------ALYKASEAVDELQAGEAGVVVLEQTPFYAESGGQVGDVGF 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++ D QK + V G L+ ++ ID R + NHS THL+ Sbjct: 509 IFAGENCFRVEDTQKIKAAVHGQFGAVVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q GS + RFD++H + I++ E+ +E VN I N+PV Sbjct: 569 HKALRDVLGTHVEQKGSLQNAELTRFDISHPQGISAEEIAEVERRVNAAIIANVPVKVET 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA SGA L G KY D VRV+++ G +S+ LCGGTHV+ TG+I I+SE Sbjct: 629 MSIEDAQKSGAMMLFGEKYGDFVRVITM-----GDYSTELCGGTHVARTGDIGFFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AGIRR+EAITG A + Q+ +K++ + +K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGIRRVEAITGLAALAWAQNQESLVKNIIAEVKAQTEKDVLAKIQANAANAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL N +DL K+ E D+ L+ ++ L K + Sbjct: 744 ELAKAKAELAVHAGAKLLDNAKDLGAAKLV------AAQIEADAAALREIVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ + K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-DGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 855 Query: 883 NKADQAIAGVASFL 896 K + + V ++ Sbjct: 856 AKLPEMLGSVEGWV 869 >gi|268594178|ref|ZP_06128345.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02] gi|268547567|gb|EEZ42985.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae 35/02] Length = 881 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 10 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 70 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 190 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 368 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 369 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 426 DEAGFEREMEAQRARARAA-------QSFKANAQLPYDGQDTEFKGYS----------ER 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 469 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 516 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 576 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 635 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 636 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 805 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 862 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 863 DKLPEMLASAEGWL 876 >gi|268685404|ref|ZP_06152266.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035] gi|268625688|gb|EEZ58088.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 874 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDT 855 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 856 DKLPEMLASAEGWL 869 >gi|240127048|ref|ZP_04739709.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae SK-93-1035] Length = 881 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 10 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 69 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 70 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 129 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 130 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 189 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 190 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 249 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 250 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 308 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 309 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 368 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 369 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 425 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 426 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGYS----------ER 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 469 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 515 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 516 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ I N+ V I Sbjct: 576 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAILANVAVNAAI 635 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 636 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 690 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 691 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 750 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 751 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 804 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 805 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDT 862 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 863 DKLPEMLASAEGWL 876 >gi|317163606|gb|ADV07147.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107] Length = 885 Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 14 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 74 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 133 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 134 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 193 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 194 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 253 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 254 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 312 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 313 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 372 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 373 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 429 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 430 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGYS----------ER 472 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 473 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 519 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 520 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 579 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 580 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 639 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 640 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 695 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 754 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 755 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 809 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDA 866 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 867 DKLPEMLASAEGWL 880 >gi|281412824|ref|YP_003346903.1| alanyl-tRNA synthetase [Thermotoga naphthophila RKU-10] gi|281373927|gb|ADA67489.1| alanyl-tRNA synthetase [Thermotoga naphthophila RKU-10] Length = 863 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/905 (41%), Positives = 549/905 (60%), Gaps = 64/905 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY V T QK Sbjct: 9 IREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRVATCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ + + +L+ Sbjct: 68 CLRT----VDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLW 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG----- 180 ++VY+EDEEAF++W + GL KI+R+ DNFW A TGPCGP +EIF+D G Sbjct: 124 VSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGC 183 Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 EC P G R++EIWNLVF ++ Q + + LP+ +IDTG GLER + Sbjct: 184 PEGEECTPANSEG------RFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAM 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q +N+D DLF+ +I E++TG+ Y+ + V+ RVI DH+R+ +FLI++G+ P+N Sbjct: 238 MQGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRAM + LLG +EP + ++ A+ +MG YPE+++ + +++E L +E Sbjct: 298 EGRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + RF KTL++G+ + D ++ GK ++ + AF+LYDT+GLPL++ +I +G+ +D Sbjct: 358 ENRFLKTLEQGMKVFDEIVEKKGK---IDSEDAFRLYDTYGLPLELTLEIAKEKGVE-VD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + FN+ +EEQ+ ++RA ++G + K T+F GY+ K E Sbjct: 414 VQEFNKYMEEQQRKSRA-AMGDVEFARRYEYLEKLPKDFRTEFTGYE-----KLEDEGEV 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 VL I + E VEEA G VEVVF +TPFYAE GGQ+ DTG Sbjct: 468 VL------------------IARDDETVEEASEGT-VEVVFSRTPFYAEKGGQVSDTGMV 508 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + V + +EG+ VH + G LR +VL +D + R NH+ATHLLH Sbjct: 509 EWRDGKALVEYVFEASEGVIVHRIKILDGTLRRGQKVVLRVDKKRRESTMRNHTATHLLH 568 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + PD LRFD TH K ++S+E++ +ED VN+ I + +PV R Sbjct: 569 AALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSSEIEQVEDLVNEWIMEAIPVEVRYT 628 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A+ SG AL KY D VRVV V S LCGGTHV +TG+I L I+SE Sbjct: 629 SYEEAVKSGVVALFTEKYGDVVRVVEVP-----GVSKELCGGTHVKNTGQIGLFKIISEE 683 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ +G+RRIEA+TG A L Q + + L L + + RV + E+ ++L+ Sbjct: 684 SVSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKL 743 Query: 775 AKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK- 832 ++ ++ + ++ ++ D V + V++K L + D + KK GI++L SK Sbjct: 744 SQGRISEKM--ITMKQLEDGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVIL--FSKF 799 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 E K +++ V+E+LLDR++A +AR AK L GG GGGR + AQ+GG + + + + Sbjct: 800 ENKVFLVVKVSENLLDRYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERIKDVLERL 858 Query: 893 ASFLK 897 FL+ Sbjct: 859 EEFLR 863 >gi|240117118|ref|ZP_04731180.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1] gi|268602805|ref|ZP_06136972.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1] gi|268586936|gb|EEZ51612.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae PID1] Length = 874 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSITAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDT 855 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 856 DKLPEMLASAEGWL 869 >gi|240016958|ref|ZP_04723498.1| alanyl-tRNA synthetase [Neisseria gonorrhoeae FA6140] Length = 874 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/914 (41%), Positives = 532/914 (58%), Gaps = 68/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGKEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG ++P L+ L EMG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQSKPFFHKLVADLVQEMGGAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ RF +TL+ G+ LL+ L+ GK L G++ FKLYDT+G P D+ DI R + Sbjct: 362 EESRFAQTLETGMALLENALAKGGK--TLGGEIIFKLYDTYGFPYDLTADICRERNIE-P 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +E QR+RARA + K L T+F GY +R Sbjct: 419 DEAGFEREMEAQRARARAAQ-------SFKANAQLPYDGQDTEFKGY----------SER 461 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V A+ + G V E G VV D TPFYAE+GGQ+GD G Sbjct: 462 Q-------------TESKVLALYKDGGQVVELNEGDSGAVVIDFTPFYAESGGQVGDVGY 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 R ++ D QK +F + G L+ S+ +D + R NHSATHL+ Sbjct: 509 IFAGENRFEVRDTQKIKAAVFGQFGVQTSGRLKVGDSVTAKVDDEIRNANMRNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV Q GS +T + RFD++H + +T+ E+ +E VN+ + N+ V I Sbjct: 569 HKALRDVLGGHVEQKGSLVTAESTRFDISHPQAVTAEEIAEVERRVNEAVLANVAVNAAI 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA + A L G KY D VRV+ + G S+ LCGGTHVS TG+I L I+SE Sbjct: 629 MSMEDAQKTDAMMLFGEKYGDEVRVLQM-----GGFSTELCGGTHVSRTGDIGLFKIISE 683 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ- 771 I AG+RRIEAITG A Q+ +K + + K ++ +V+ +++ + L+ Sbjct: 684 GGIAAGVRRIEAITGLNALKWAQEQERLVKDIIAETKAQTEKDVLAKIQAGAAHAKALEK 743 Query: 772 ---------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +HA KL + +DL K+ E D+ L+ + L K + Sbjct: 744 ELARAKAELAVHAGAKLLDDAKDLGAAKLV------AAQIEADAAALRETVTDLTGKSDN 797 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ E K S+ V++ L + A DL + +A+ + GG GGGRP +AQ+GG + Sbjct: 798 AVILLAAVN-EGKVSLCAGVSKALTGKVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDT 855 Query: 883 NKADQAIAGVASFL 896 +K + +A +L Sbjct: 856 DKLPEMLASAEGWL 869 >gi|148270517|ref|YP_001244977.1| alanyl-tRNA synthetase [Thermotoga petrophila RKU-1] gi|205830276|sp|A5IMH8|SYA_THEP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|147736061|gb|ABQ47401.1| alanyl-tRNA synthetase [Thermotoga petrophila RKU-1] Length = 863 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/910 (41%), Positives = 556/910 (61%), Gaps = 74/910 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY V T QK Sbjct: 9 IREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRVATCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ + + +L+ Sbjct: 68 CLRT----VDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLW 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG----- 180 ++VY+EDEEAF++W + GL KI+R+ DNFW A TGPCGP +EIF+D G Sbjct: 124 VSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGC 183 Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 EC P G R++EIWNLVF ++ Q + + LP+ +IDTG GLER + Sbjct: 184 PEGEECTPANSEG------RFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAM 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q +N+D DLF+ +I E++TG+ Y+ + V+ RVI DH+R+ +FLI++G+ P+N Sbjct: 238 MQGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHMRAITFLISEGVFPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRAM + LLG +EP + ++ A+ +MG YPE+++ + +++E L +E Sbjct: 298 EGRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVAEKMGKVYPEIVRGESMVKEVLSAE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + RF KTL++G+ + D ++ G+ ++ + AFKLYDT+GLPL++ +I +G+ +D Sbjct: 358 ESRFLKTLEQGMKVFDEIVEKKGR---IDSEDAFKLYDTYGLPLELTLEIAREKGVE-VD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE--KYGATQFIGYDLLRGSKFMKED 472 + FN+ +EEQ+ ++R + LG + + L+E K T+F GY+ K E Sbjct: 414 VKEFNKYMEEQQRKSR---VALGDVEFARRYEYLEELPKDFRTEFTGYE-----KLEDEG 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 VL I + + VE+A VEVVF +TPFYAE GGQ+ DTG Sbjct: 466 EVVL------------------IAKNEKAVEDATE-DAVEVVFSKTPFYAEKGGQVSDTG 506 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + + V + +EG+ VH V G LR +VL +D + R NH+ATHL Sbjct: 507 TVEWEDGKALVEYVFEASEGVIVHRIKVLAGTLRRGQKVVLRVDKKRREATMRNHTATHL 566 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV Q GS + PD LRFD TH K ++ AE++ +E+ VN+ I + +PV R Sbjct: 567 LHAALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSMAEIEQVENLVNEWIMEAIPVEVR 626 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + E+A+ SG AL KY D VRVV V S LCGGTHVS+TG+I L I+S Sbjct: 627 YTSYEEAVKSGVVALFTEKYGDVVRVVEVP-----GVSKELCGGTHVSNTGQIGLFKIIS 681 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E S+ +G+RRIEA+TG L Q + + L L + + RV + E+ ++L+ Sbjct: 682 EESVSSGVRRIEAVTGFSTLELLRNQKKLIDQLKEILGAREDELTDRVLGLREKVKELE- 740 Query: 773 IHAKRKL---QLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 +KL +++ E ++ ++ D + +V++K L + D + KK + GI++L Sbjct: 741 ----KKLSQGRISEEKIAMKQLEDGARVFYAVFEDVEAKHLGGIADNVLKKEREGIVIL- 795 Query: 829 GISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 +SK E K S+++ V+E+LLD+++A +AR AK L GG GGGR + AQ+GG + K Sbjct: 796 -LSKFEDKVSLVVKVSENLLDKYDASSIARNIAKEL-GGSGGGRRNFAQAGGRHPEKIRG 853 Query: 888 AIAGVASFLK 897 + + FL+ Sbjct: 854 VLERLEEFLR 863 >gi|269959066|ref|YP_003328855.1| alanyl-tRNA synthetase [Anaplasma centrale str. Israel] gi|269848897|gb|ACZ49541.1| alanyl-tRNA synthetase [Anaplasma centrale str. Israel] Length = 882 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/769 (46%), Positives = 467/769 (60%), Gaps = 48/769 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61 ++SSIR FLEFF KNGH+L S+ L+ D +L+FT++GMVPFK FT G + Sbjct: 5 SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW +T+E L Sbjct: 65 VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ITVY ED+EAF +WKKI+G D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184 Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS + +G R+ E+WNLVFMQF + E LP IDTGMGLER A V+Q Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYD DLFK +I+ S+ V G +N + HRVI DH+R+++FLI++G+LP NEGR YV Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSP---DNSIAHRVIADHIRAAAFLISEGLLPGNEGRNYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355 LRRI+RRA+ YA L + + +LP L E MG AYPEL++ + I TLRSE Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E F TL RG+ LL + L ++L GDVAFKLYDT G PLDI DI RGL D Sbjct: 362 EGFVDTLRRGMALLAKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN+ + EQ+ R+R H +G G + ++W L+ ++ T+F+GYD Sbjct: 421 EGFNKGMGEQKERSRRHWVGSGEDASHRLWEELQAQHKNTRFVGYD-------------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 C + V +I + G V+ SG+K ++ D +PFYAE+GGQ GD G Sbjct: 467 CCS---------TKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSIT 517 Query: 536 G-------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G G + +KA + +H + G+ ++ ID R +L NHS Sbjct: 518 GVSGVNNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH L T + ++ Q GS + D LRFD ++ +T ++ IE VN I N P Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQIALIEREVNRRIMSNKP 637 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V+T + E A+ GA AL G KY++ VRVVS+ S LCGGTHV TG+I Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIGA 691 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 IVSES I G+RRIEAITGQ L + L ++ L V G V Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEV 740 >gi|222474888|ref|YP_002563303.1| alanyl-tRNA synthetase (alaS) [Anaplasma marginale str. Florida] gi|255002859|ref|ZP_05277823.1| alanyl-tRNA synthetase [Anaplasma marginale str. Puerto Rico] gi|222419024|gb|ACM49047.1| alanyl-tRNA synthetase (alaS) [Anaplasma marginale str. Florida] Length = 882 Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/769 (46%), Positives = 468/769 (60%), Gaps = 48/769 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFT-GQEKPVYQAV 61 ++SSIR FLEFF KNGH+L S+ L+ D +L+FT++GMVPFK FT G + Sbjct: 5 SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 + QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW +T+E L Sbjct: 65 VSSQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLS 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL+ITVY ED+EAF +WKKI+G D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 KDRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGE 184 Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + GG PGS + +G R+ E+WNLVFMQF + E LP IDTGMGLER A V+Q Sbjct: 185 HVQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLERAAAVVQGV 244 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NYD DLFK +I+ S+ V G NN + HRVI DH+R+++FLI++G+ P NEGR YV Sbjct: 245 CDNYDTDLFKAVIRKSQDVFGSP---NNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSED 355 LRRI+RRA+ YA L + + +LP L E MG AYPEL++ + I TLRSE Sbjct: 302 LRRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEG 361 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E F TL RG+ LL+ + L ++L GDVAFKLYDT G PLDI DI RGL D Sbjct: 362 EGFVDTLRRGMALLEKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQ 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F++ + EQ+ R+R H +G G + ++W L+ ++ T+F+GYD Sbjct: 421 EGFDKGMGEQKERSRKHWVGSGEDASHRLWEELQAQHKNTRFVGYD-------------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 C + V +I + G V+ SG++ ++ D +PFYAE+GGQ GD G Sbjct: 467 CCS---------TKASVLSITRDGMAVQSVNSGERACLLLDVSPFYAESGGQEGDKGSIT 517 Query: 536 G-------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G G+ + +KA + +H + G+ ++ ID R +L NHS Sbjct: 518 GVSGVNNSGGVNIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHS 577 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH L T + ++ Q GS + D LRFD ++ +T ++ IE VN I N P Sbjct: 578 ATHILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQITLIEREVNRRIMSNKP 637 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V+T + E A+ GA AL G KY++ VRVVS+ S LCGGTHV TG+I Sbjct: 638 VLTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIGA 691 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 IVSES I G+RRIEAITGQ L + L ++ L V G V Sbjct: 692 FKIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEV 740 >gi|15644148|ref|NP_229197.1| alanyl-tRNA synthetase [Thermotoga maritima MSB8] gi|6707752|sp|Q9X1B6|SYA_THEMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|4981959|gb|AAD36467.1|AE001792_7 alanyl-tRNA synthetase [Thermotoga maritima MSB8] Length = 863 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/903 (41%), Positives = 555/903 (61%), Gaps = 60/903 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY V T QK Sbjct: 9 IREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRVATCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ + + +L+ Sbjct: 68 CLRT----VDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLW 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGE---C 182 ++VY+EDEEAF++W + GL +I+R+ DNFW A TGPCGP +EIF+D G C Sbjct: 124 VSVYEEDEEAFRIWNEKIGLPEKRILRMGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGC 183 Query: 183 IPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G G ++ EG R++EIWNLVF ++ Q + + LP+ +IDTG GLER ++Q Sbjct: 184 PEGEGCTPANSEG-RFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAMMQGVY 242 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +N+D DLF+ +I+ E++TG+ Y+ + V+ RVI DH+R+ +FLI++G+ P+NEGRGY Sbjct: 243 SNFDTDLFQPIIKRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSNEGRGY 302 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRAM + LLG +EP + ++ A+ +MG YPE+++ + +++E L +E+ RF Sbjct: 303 VLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAEENRFL 362 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL++G+ + D ++ GK ++ + AF+LYDT+GLPL++ +I +G+ +D+ FN Sbjct: 363 KTLEQGMKVFDEIVEKKGK---IDSEDAFRLYDTYGLPLELTLEIAKEKGVE-VDVQEFN 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +EEQ+ ++RA ++G + K T+F GY+ K E VL Sbjct: 419 KYMEEQQRKSRA-AMGDVEFARRYEYLEKLPKDFRTEFTGYE-----KLEDEGEVVL--- 469 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + E VEEA G VEVVF +TPFYAE GGQ+ DTG Sbjct: 470 ---------------VARDDETVEEASEGT-VEVVFSRTPFYAEKGGQVSDTGMVEWRDG 513 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + V + +EG+ VH + G LR ++L +D + R NH+ATHLLH AL Sbjct: 514 KALVEYVFEASEGVIVHRIKILDGTLRRGQKVILRVDKKRREATMRNHTATHLLHAALKK 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV Q GS + PD LRFD TH K ++SAE++ +ED VN+ I + +PV R + E+A Sbjct: 574 VLGDHVRQAGSLVAPDRLRFDFTHFKGLSSAEIEQVEDLVNEWIMEAIPVEVRYTSYEEA 633 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + SG AL KY D VRVV V S LCGGTHV +TG+I L I+SE S+ +G Sbjct: 634 VKSGVVALFTEKYGDVVRVVEVP-----GVSKELCGGTHVKNTGQIGLFKIISEESVSSG 688 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+TG A L Q + + L L + + RV + E+ ++L+ +KL Sbjct: 689 VRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELE-----KKL 743 Query: 780 ---QLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK-EK 834 +++ E ++ ++ D V + V++K L + D + KK GI++L SK E Sbjct: 744 SQGRISEERIAMKQLEDGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVIL--FSKFEN 801 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 K S+++ V+E+LL +++A +AR AK L GG GGGR + AQ+GG + + + + Sbjct: 802 KVSLVVKVSENLLGKYDASSIARNIAKEL-GGNGGGRKNFAQAGGRHPERIKDVLERLEE 860 Query: 895 FLK 897 FL+ Sbjct: 861 FLR 863 >gi|83590480|ref|YP_430489.1| alanyl-tRNA synthetase [Moorella thermoacetica ATCC 39073] gi|123524268|sp|Q2RHZ3|SYA_MOOTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83573394|gb|ABC19946.1| alanyl-tRNA synthetase [Moorella thermoacetica ATCC 39073] Length = 881 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/898 (41%), Positives = 540/898 (60%), Gaps = 43/898 (4%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF GH ++ SSSL+P NDPTL+FTN+GMV FK+++ G ++ + TT Sbjct: 4 NELRERFLKFFASKGHTIVHSSSLVPANDPTLLFTNAGMVQFKDVYLGLDRRPFTRATTA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK AI AW+ LT+ +L R Sbjct: 64 QKCVRAGGKHNDLDTVGRTARHHTFFEMLGNFSFGDYFKREAITYAWEFLTRVLELPPER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 L++TVY ED+EA++LW++I+G+ A++I+R+ DNFW+M +TGPCGPCSEI +D+G Sbjct: 124 LWVTVYQEDDEAYQLWQEIAGIPAERIVRMGEKDNFWAMGDTGPCGPCSEIIYDRGPEHA 183 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 C + + +R++EIWNLVFMQ+E+ + LP+ SIDTGMGLER+A+VLQ Sbjct: 184 CSSTPCALGACDCDRWLEIWNLVFMQYERDSNGNLSPLPRPSIDTGMGLERVASVLQGVD 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +N+D DL LI+A E++TG Y+ G RVI DH RS +FLIADGILP NEGR YV Sbjct: 244 SNFDTDLIAPLIKAVEKITGRTYDPGEAGFPFRVIADHARSCTFLIADGILPGNEGRSYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA + + LG EP + L+ + MG AYPE+ + + I + E+ RF + Sbjct: 304 LRRILRRAARFGKALGIDEPFLYRLVDTVVAIMGGAYPEVAEQQEHIARVIEQEEIRFHE 363 Query: 361 TLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL+ GL +L+G+L ++ E+++G AF LYDT+G PLD+ ++I G +D F Sbjct: 364 TLNDGLKVLNGILERARQEGREVVSGLEAFTLYDTYGFPLDLTEEIAGEGGFK-VDRDGF 422 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +A+ QR RARA + + + E T F GYD L ED+ Sbjct: 423 EKAMAAQRERARAAREDVKAYDFALAFAGALEDISGTAFTGYDQL-------EDK----- 470 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 V A+ Q+G V + VV D+TP Y E GGQ+GD G G Sbjct: 471 -----------GTVLALFQEGARVTSLEANATGYVVLDRTPCYPEGGGQVGDRGELKWSG 519 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++ D ++ +G VH V G L + + +D + R+ + NH+ THLLH AL Sbjct: 520 GQARVEDTRRLPDGKIVHQINVTAGTLVVGQEVEIAVDRERRQATARNHTVTHLLHRALK 579 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV+Q GS +TP+ LRFD TH P+T EL+++E VN I NLPV T + ++ Sbjct: 580 NILGEHVNQAGSLVTPERLRFDFTHFAPLTGEELRAVEAEVNQKILANLPVTTLETSYQE 639 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GA AL G KY +RVRVV ++ +S LCGGTH+ ST E +VSES I A Sbjct: 640 AKAMGATALFGEKYGERVRVVKID-----AYSMELCGGTHLGSTSEAGSFRLVSESGIGA 694 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RR+EA+TG A + ++L ++A LKV + RV + E+ ++ + A+ + Sbjct: 695 GVRRVEAVTGAAALEMALQDRQELATIAGLLKVPPDQAIQRVRHLLEQNKENERELAQLR 754 Query: 779 LQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 +L ++ L ++A V + + D + L+ + + L+ ++ SG+++L G Sbjct: 755 NELASYTIDKLLDRVQEVAGVPVLPARVQITDPEALREMAERLRSRLGSGVVIL-GSQHN 813 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + + +V++DL+ R +A +L R A++ GGGGGR MAQ+GG + K DQA+A Sbjct: 814 GRVNFVAMVSKDLVQRGIHAGNLLREVARI-ASGGGGGRADMAQAGGKDPGKLDQALA 870 >gi|170289222|ref|YP_001739460.1| alanyl-tRNA synthetase [Thermotoga sp. RQ2] gi|205830279|sp|B1LBS9|SYA_THESQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|170176725|gb|ACB09777.1| alanyl-tRNA synthetase [Thermotoga sp. RQ2] Length = 863 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/905 (41%), Positives = 548/905 (60%), Gaps = 64/905 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+K GH++LPS+SLIP +DP L+FT +GMVPFK IF G+ +PVY V T QK Sbjct: 9 IREAFLKFFEKKGHKILPSASLIP-DDPQLLFTVAGMVPFKPIFWGKVEPVYTRVATCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ LT+ + + +L+ Sbjct: 68 CLRT----VDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFLTQVLGVPEEKLW 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG----- 180 ++VY+EDEEAF++W + GL KI+R+ DNFW A TGPCGP +EIF+D G Sbjct: 124 VSVYEEDEEAFRIWNEKIGLPEKKILRMGKEDNFWGPAGPTGPCGPDTEIFYDTGYSKGC 183 Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 EC P G R++EIWNLVF ++ Q + + LP+ +IDTG GLER + Sbjct: 184 PEGEECTPANSEG------RFVEIWNLVFTEYYQDEEGKLHPLPRKNIDTGAGLERFCAM 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q +N+D DLF+ +I E++TG+ Y+ + V+ RVI DH+R+ +FLI++G+ P+N Sbjct: 238 MQGVYSNFDTDLFQPIINRIEELTGVGYKTDEEKDVSIRVIADHIRAITFLISEGVFPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRAM + LLG +EP + ++ A+ +MG YPE+++ + +++E L +E Sbjct: 298 EGRGYVLRRIIRRAMRHGILLGMSEPFLYRIVDAVVEKMGKVYPEIVRGEGMVKEVLSAE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + RF KTL++G+ + D ++ GK ++ + AF+LYDT+GLPL++ +I +G+ +D Sbjct: 358 ENRFLKTLEQGMKVFDEIVEKKGK---IDSEDAFRLYDTYGLPLELTLEIAKEKGVE-VD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + FN+ +EEQ+ ++RA ++G + K T+F GY+ K E Sbjct: 414 VQEFNKYMEEQQRKSRA-AMGDVEFARRYEYLEKLPKDFRTEFTGYE-----KLEDEGEV 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 VL I + E VEEA G VEVVF +TPFYAE GGQ+ DTG Sbjct: 468 VL------------------IARDDETVEEASEGT-VEVVFSRTPFYAEKGGQVSDTGMV 508 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + V + +EG+ V + G LR +VL +D + R NH+ATHLLH Sbjct: 509 EWRDGKALVEYVFEASEGVIVQRIKILDGTLRRGQKVVLRVDKKRRESTMRNHTATHLLH 568 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + PD LRFD TH K ++SAE++ +ED VN+ I + +PV R Sbjct: 569 AALKKVLGDHVRQAGSLVAPDRLRFDFTHFKGLSSAEIEQVEDLVNEWIMEAIPVEVRYT 628 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A+ SG AL KY D VRVV V S LCGGTHV +TG+I L I+SE Sbjct: 629 SYEEAVKSGVVALFTEKYGDVVRVVEVP-----GVSKELCGGTHVKNTGQIGLFKIISEE 683 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ +G+RRIEA+TG A L Q + + L L + + RV + E+ ++L+ Sbjct: 684 SVSSGVRRIEAVTGFSALELLRNQKKLIDQLKEILGAREDELTDRVLSLREKVKELEKKL 743 Query: 775 AKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK- 832 ++ ++ + ++ ++ D V + V++K L + D + KK GI++L SK Sbjct: 744 SQGRISEKM--IAMKQLEDGVKVFHGVFEGVEAKHLGGIADNVLKKEGEGIVIL--FSKF 799 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 E K +++ V+E+LLDR++A +AR AK L GG GGGR + AQ+GG + + + + Sbjct: 800 ENKVFLVVKVSENLLDRYDASSIARNIAKEL-GGSGGGRKNFAQAGGRHPERIKDVLERL 858 Query: 893 ASFLK 897 FL+ Sbjct: 859 EEFLR 863 >gi|241765465|ref|ZP_04763432.1| alanyl-tRNA synthetase [Acidovorax delafieldii 2AN] gi|241364775|gb|EER59764.1| alanyl-tRNA synthetase [Acidovorax delafieldii 2AN] Length = 874 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/909 (41%), Positives = 524/909 (57%), Gaps = 56/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 6 TVADIRKTFLDFFASKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAV 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 66 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPA 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI N DNFW MA+TGPCGPCSEI Sbjct: 126 DRLLATVYQEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D E G E+G+R+IEIWN VFMQF+ LP +DTGMGLER+A Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERLA 245 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LI+A+ + TG+ N + RVI DH+R+++FL++DG++P+N Sbjct: 246 AILQHVHSNYEIDLFDALIKAAGRETGVTDLNNKSL--RVIADHIRATAFLVSDGVIPSN 303 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L MG AYP L + + I E L++E Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGKKTPFFHKLVADLVRLMGDAYPALREQEQRITEVLKAE 363 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L G ++L GDVAFKL+DT+G PLD+ D+ R + +D Sbjct: 364 EERFFETLANGMEILDAALD--GGAKVLPGDVAFKLHDTYGFPLDLTNDVCRERDVE-VD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+E+Q+++ARA G +K +L+ A QF GY+ L E K Sbjct: 421 EAGFKTAMEKQKAQARA----AGKFKMDK---ALEYTGAANQFTGYEHL------AETAK 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ AI G +GQ VV D TPFYAE+GGQ+GD G Sbjct: 468 IV-----------------AIYVDGTSAAALKTGQNGVVVLDTTPFYAESGGQVGDEGVI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 R + D K +F HH +E G L ++ ++ R NHS THL+H Sbjct: 511 TSGSARFAVGDTLKVKADVFGHHGTLEHGTLNVGDTVQAQVNTAVRAATMRNHSVTHLMH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS + D RFD H+ +T+AE++ IE VN+ I N P R+M Sbjct: 571 KALREVLGSHVQQKGSLVNADRTRFDFAHNAAVTNAEIREIERRVNEEILANQPTQARVM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHV TG+I L +VSE Sbjct: 631 DIESAQKTGAMMLFGEKYGETVRVLDIGT------SRELCGGTHVQRTGDIGLFKVVSEG 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+TG A ++L ++ + A LK + GR+ + E R L ++ Sbjct: 685 GVAAGVRRIEAVTGANALAYLQQLEDTVHQAAGTLKAPVAELNGRIGQALEHARALEKEV 744 Query: 773 IHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D ++ + ++ + D+K L+ MD L+ K+++ I+L Sbjct: 745 AALKGKLASSQGDELVTQAVEVKGLKVLAAALPGADAKTLRDTMDKLKDKLKTAAIVLAA 804 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K + VT D + R A +L A+ + GG GGG+P MA +GG + +K A+ Sbjct: 805 VDGD-KVQLAAGVTSDTVGRIKAGELVNFVAQQV-GGKGGGKPDMAMAGGTDASKLPAAL 862 Query: 890 AGVASFLKK 898 A V ++ + Sbjct: 863 ASVTGWVTQ 871 >gi|119478765|ref|ZP_01618604.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2143] gi|119448344|gb|EAW29599.1| alanyl-tRNA synthetase [marine gamma proteobacterium HTCC2143] Length = 874 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/879 (41%), Positives = 529/879 (60%), Gaps = 63/879 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL FF++ GH + SSSL+P NDPTL+FTN+GMV FK++F GQ+ Y T+ Sbjct: 4 SEIREAFLCFFEEKGHTRVASSSLVPGNDPTLLFTNAGMVQFKDVFLGQDHRSYTRATSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT ++ Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAFAWEFLTAAEWLNIPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L +TVY +D EA+ +WK + ++IIRI N DNFWSM +TGPCGPCSEI Sbjct: 124 DKLTVTVYADDSEAYDIWKNEMLVPEERIIRIGDNKGVKYASDNFWSMGDTGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS E+G+R+IEIWN VFMQ+ + + LP S+DTGMGLER+A Sbjct: 184 FYDHGPEIEGGPPGSPDEDGDRFIEIWNNVFMQYNRSSDGTMADLPAPSVDTGMGLERIA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 V+Q+ NNY+IDLF++L+ A+ +V G+ + + RVI DH+RS +FL+ DG+LP+N Sbjct: 244 AVMQDVHNNYEIDLFQNLLNAAAKVLGVNDTTDTSL--RVIADHIRSCAFLVVDGVLPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + +G E L+ L EMG+AYPEL + + IE+ L +E Sbjct: 302 EGRGYVLRRIVRRAVRHGNKMGAKEAFFYRLVAPLALEMGAAYPELPKLQSRIEKVLLTE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +++F KTLD+G+ +L+ L +L EI G+ FKLYDT G P+D+ DI RGL +D Sbjct: 362 EQQFAKTLDQGMRILEADLDNLSGKEI-PGETIFKLYDTFGFPVDLTGDIARERGLT-LD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-----EKYGATQFIGYDLLRGSKFM 469 F +A+ QR RAR+ S F ++ + G T F GYD L+ Sbjct: 420 EPGFEKAMNAQRQRARSAS-----------HFKMELPSDIDIDGETIFSGYDSLQAE--- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 C+ + A++ GE+V+ G++ VV TPFY E+GGQ+G Sbjct: 466 -------CE-------------ITALLNGGELVDRLTEGEQGVVVLASTPFYGESGGQIG 505 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D+G R +++ K A+ +HH ++ +G L + + +D R+ ++NHSA Sbjct: 506 DSGFMEVGATRFDVSETTKNADN-HLHHGVILQGGLSVGDKVSVQVDENVRQATTLNHSA 564 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + LRFD +H + +T+ +L IE VN I N V Sbjct: 565 THLLHAALRQVLGDHVTQKGSLVDSKKLRFDFSHFEGLTADQLAEIETIVNQHIRHNSEV 624 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T + + + A GA L G KY D+VRV+++ +DG S+ LCGGTHVS TG I L+ Sbjct: 625 TTTVTDMDHASELGAMMLFGEKYGDQVRVLAMG-DDG--FSTELCGGTHVSRTGNIGLMR 681 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I +ES I AG+RRIEA TG A + + ++ +A+ +K S+ NV +++++ E +++ Sbjct: 682 ITAESGIAAGVRRIEATTGATALALFSDTERRIGEIAALVKGSRENVASKIQQVLESHKQ 741 Query: 770 L--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK---KIQSGI 824 L +L K K+ + DVN + + ++++ ++K++ D + K K+ S + Sbjct: 742 LEKELSRLKSKMASAAGSELADQAVDVNGIRVVACQLEAADMKTLDDTVSKLKDKLGSSV 801 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 ++L I + K ++ V+ DL+ + A DL + A ++ Sbjct: 802 VLLASIDGD-KINLACGVSSDLIKQVRAGDLMKYFAPLV 839 >gi|327398418|ref|YP_004339287.1| alanyl-tRNA synthetase [Hippea maritima DSM 10411] gi|327181047|gb|AEA33228.1| alanyl-tRNA synthetase [Hippea maritima DSM 10411] Length = 860 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/900 (40%), Positives = 537/900 (59%), Gaps = 51/900 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FLE+F++NGH ++ S+ L+P NDPTL+F N+GMV FKN+F G+EK Y T+ Sbjct: 4 SDLRKAFLEYFKENGHTIVKSAPLVPKNDPTLLFVNAGMVQFKNVFLGKEKRDYARATSC 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI WD +T+ +D+ + Sbjct: 64 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFGWDFVTRVLGIDKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+IT++ +D+EAF++W K G+ + +I+R+ +DNFW+M +TGPCGPCSEI DQG + Sbjct: 124 LWITIFKDDDEAFEIWNKQEGVPSSRIVRMDEHDNFWAMGDTGPCGPCSEIHIDQGPDVG 183 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P S + +RY+E+WNLVFMQ+ + LPK SIDTGMGLER++ +LQ + Sbjct: 184 CGKPNCSVACDCDRYLELWNLVFMQYNRDEDGNMTPLPKPSIDTGMGLERVSAILQGVHS 243 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N+DID+F+H+I + + Y + N V RVI DHLR+ FLIADG+ P EGRGYV Sbjct: 244 NFDIDIFRHIIGNISEFFRIDYGKDSNRDVGVRVIADHLRAMDFLIADGVFPDKEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRIMRRAM + + LG EP + + + MG YPEL+Q K ++ +++E+E+F + Sbjct: 304 LRRIMRRAMRFGKKLGANEPFLYRFIDTVNDVMGDVYPELLQNKEMVVNVVKAEEEQFFE 363 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TLD GL +L+ + K +++ + AFKLYDT+G P+D+ DI G +D+ FN+ Sbjct: 364 TLDSGLRILNDIFDKATK-RVVDAESAFKLYDTYGFPIDLTVDIAKENGFE-VDVKDFNE 421 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLLRGSKFMKEDRKVLC 477 LE+QR +R G G E +W + + Y G T+F+GYD +F + R Sbjct: 422 LLEKQREASRKSWKGSGD---EFVWDAFGDIYKQKGKTEFVGYD-----EFETKAR---- 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + IV + + ++E +FD+TPFYAE+GGQ+ DTG + Sbjct: 470 --------------LLGIVGKDKKIKEQAQRGVYYFIFDKTPFYAESGGQVADTGFILKG 515 Query: 538 GIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 R ++DV+K +G +FVH V G L I+ R+ ++ +H+ATHLL A Sbjct: 516 NARAFVSDVKKYFDGNLFVHKVDVLEGEFELNDECDLRINVARRKNIARHHTATHLLDAA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG HV Q GS + + LRFD TH +T +++ IE+ +N I +N PV T M+ Sbjct: 576 LIKILGKHVRQAGSLVEDNRLRFDFTHFSKLTDEQIEEIEELINSWIVENYPVKTETMSL 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DAI SGA AL KY+D VRVVSV G S LCGGTHV ++GEI L ++ ES++ Sbjct: 636 DDAINSGAIALFDEKYSDEVRVVSV-----GNISKELCGGTHVKASGEIGLFKVIHESAV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 GIRRIEA G A ++ ++ LK AS L + + E+ + Sbjct: 691 AKGIRRIEAKVGVEAYEYVKQIEKVLKDAASKLGIP-------ITEL-PLKIEELKKKKT 742 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 K Q + K+ ++ + D EL+ + D ++ K++S I++L K+ + Sbjct: 743 LKSQPKFDPSKVVKVNGIDVYVDVFENEDVSELRHLGDTVKSKLKSCIVVLFD-KKDDRV 801 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +V+++VT+DL +R A D+ ++ L GG GGG+ AQ GG + ++ ++ I + SFL Sbjct: 802 NVIVMVTKDLANRIKAKDVVGKISRAL-GGKGGGKEEFAQGGGRDLDRLEEIIRSINSFL 860 >gi|299530963|ref|ZP_07044376.1| alanyl-tRNA synthetase [Comamonas testosteroni S44] gi|298720920|gb|EFI61864.1| alanyl-tRNA synthetase [Comamonas testosteroni S44] Length = 874 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/845 (42%), Positives = 504/845 (59%), Gaps = 54/845 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+F+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 7 SVADIRKTFLDFYASKGHTVVASSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYNRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ +I+ W+LLTK F L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESIEWGWELLTKVFGLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L TVY ED+EA+ +WK + GL A++IIRI N DNFW MA+TGPCGPCSEI Sbjct: 127 EKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGDNKGGKYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D GE I GG PGS EE G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 187 FYDHGEHIAGGPPGSPEEDGDRFIEIWNHVFMQFDMKEDGSVVKLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF+ LI+A+ + T E + + +VI DH+R++SFL++DG++P+N Sbjct: 247 AILQHVHSNYEIDLFQALIKAAGRET--HTEDLSTPSLKVIADHIRATSFLVSDGVIPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I L++E Sbjct: 305 EGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVADLVVQMGDAYPKLKEQEAHITSVLKAE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G ++L GDVAFKL+DT+G PLD+ D+ RG+ +D Sbjct: 365 EERFFETLANGMEILDSALA--GDVKVLPGDVAFKLHDTYGFPLDLSNDVARERGVT-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A++ Q+ ARA K+ +L+ A F GYD L E K Sbjct: 422 EAGFNAAMQHQKETARA-------AGKFKMDRALEYTGDANVFTGYDKL------AEAAK 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 469 IV-----------------ALYADGVSVNELQAGQNGVVVLDTTPFYAESGGQVGDQGVI 511 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G R + D K +F HH ++E G L+ ++ +D R NHS TH++H Sbjct: 512 AAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVGDAVEAQVDTAVRAATMRNHSVTHIMH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H+ P+T+ +++ IE VN + N R+M Sbjct: 572 KALREVLGGHVQQKGSLVNAERTRFDFAHNAPVTAEQIREIEARVNAEVLANTATDARVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHVS TG+I L +V ES Sbjct: 632 DIESAQKTGAMMLFGEKYGETVRVLDIG------SSRELCGGTHVSRTGDIGLFKVVGES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIE ITG+ A ++L + + A+ K + R+ ++ + L ++ Sbjct: 686 GVAAGVRRIEGITGENALAYLQSLESTVDQAAAAFKAPVAELTNRIGGALDQIKALEKEI 745 Query: 773 IHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + ADVN ++ + D+K L+ MD L+ K+ + +I+L Sbjct: 746 AALKGKLASSQGDELATQAADVNGVKVLAAKLEGADAKTLRDTMDKLKDKLGAAVIVLAA 805 Query: 830 ISKEK 834 + +K Sbjct: 806 VDGDK 810 >gi|301064400|ref|ZP_07204825.1| alanine--tRNA ligase [delta proteobacterium NaphS2] gi|300441482|gb|EFK05822.1| alanine--tRNA ligase [delta proteobacterium NaphS2] Length = 880 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/905 (40%), Positives = 534/905 (59%), Gaps = 42/905 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N IR FL++F K+ H ++ SSSLIP +DPTL+FTN+GMV FKN F G E Y Sbjct: 2 NFREIRQQFLDYFSKHDHRIVESSSLIPRDDPTLLFTNAGMVQFKNAFLG-ENVGYTRAA 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI+ W+LLT+ + L Sbjct: 61 TAQKCVRAGGKHNDLDNVGYTPRHHTFFEMLGNFSFGDYFKEEAIRWGWELLTEGYGLPA 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L+++VY +D+EA+ +W+K GL AD+I+R+ DNFW+M +TGPCGPCSEI DQG Sbjct: 121 EKLHVSVYKDDDEAYDIWQKEIGLPADRIVRLGEKDNFWAMGDTGPCGPCSEIHIDQGPS 180 Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + G P + +RY+EIWNLVF QF++ + LPK +IDTGMGLER+A V+Q Sbjct: 181 VGCGRPECACGCDCDRYLEIWNLVFTQFDRSPDGKLTPLPKPNIDTGMGLERLAAVIQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NYD DLF+ +I E ++ KY N V RVI DH R+ SFLI DGI+P+NEGRG Sbjct: 241 KSNYDTDLFRDIITRIESLSQKKYGSNERMDVAFRVISDHARAVSFLIGDGIMPSNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA + + LG + + + + MG Y EL++A+ I + +E+ RF Sbjct: 301 YVLRRIIRRASRFGQALGLEDIFLRSICDHVIELMGRDYGELVRARSFILGVVENEERRF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 TL + +L + L + E + G+V FKLYDT+GL +D+++D+ L G+D+ Sbjct: 361 ADTLRYSMKVLREEIEQLREKEKAAIPGEVVFKLYDTYGLAVDLVEDVARDENL-GVDLE 419 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + A+ QRS ++ G G K + L + ++F GYD L Sbjct: 420 GYKDAMNRQRSLSQESWKGSGEAAVPKTFRDLLNRNLTSRFTGYDTLEAE---------- 469 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S I+ ++ E V G K +++ DQT FYAE+GGQ+GDTG + Sbjct: 470 ------------SRILSLVLGDLE-VNTIYKGDKAQMILDQTAFYAESGGQVGDTGLIMN 516 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++ + K + + VH +E G L S+ ++D +R ++ +HSATHLLH A Sbjct: 517 GIAHFRVENTFKYGQDLIVHEGFLEEGELSVGDSVQASVDTAHRMAVAASHSATHLLHAA 576 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG HV Q GS + P LRFD +H +++ L +E VND I +NLP+ TRIM++ Sbjct: 577 LREILGDHVKQAGSRVAPGRLRFDFSHFTQVSTENLIEVERWVNDRIRENLPLDTRIMDK 636 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E A+ +GA A+ KY D+VR+V + G S LCGGTH TG+I + I+SE ++ Sbjct: 637 EAAMKTGAMAIFEEKYGDKVRIVDI----GEGVSRELCGGTHTRRTGDIGVFRILSEGAV 692 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 A +RRIEA+TG A + +DE+LK+ A LKV+ ++ +++ + EE R+ + Sbjct: 693 AANVRRIEALTGASALLYDQERDERLKNAAGLLKVAPDQLIEKLKRLLEEAREKEREIES 752 Query: 777 RKLQLNVEDLS--CHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGIS 831 K +L E + + ++ +S + E+++ KEL+ D ++ ++ SGI++L G Sbjct: 753 LKGRLFTEKSADLMQDVREITGISVVAKELEAETPKELREAADRIKDRLGSGIVLL-GAK 811 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K ++ VT+DL +RFNA + R + GG GGGRP MAQ GG K +A Sbjct: 812 NGGKVMLICAVTKDLTNRFNAGQIIR-ELSGIVGGKGGGRPDMAQGGGDRPEKLTEAFNS 870 Query: 892 VASFL 896 + + + Sbjct: 871 LETLI 875 >gi|126641224|ref|YP_001084208.1| alanyl-tRNA synthetase [Acinetobacter baumannii ATCC 17978] Length = 837 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/876 (43%), Positives = 508/876 (57%), Gaps = 60/876 (6%) Query: 43 MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102 M FK+ F G EK Y TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YF Sbjct: 1 MNQFKDCFLGLEKRDYVRATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYF 60 Query: 103 KERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN--- 157 K A++ AW+ LT E L + +LY+TVY D+EA+ +W K GL+ ++IIRI N Sbjct: 61 KRDALKFAWEFLTSEQWLALPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGE 120 Query: 158 ----DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQN 212 DNFW+M +TGPCGPCSEIFFD GE I GGLPGS EE G+R+IEIWN VFMQF + Sbjct: 121 KYASDNFWAMGDTGPCGPCSEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTA 180 Query: 213 KQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH 272 LP S+DTGMGLER++ VLQ +NYDIDLF+HL++A+ + G++ EG + Sbjct: 181 DGVLHPLPAPSVDTGMGLERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSL-- 238 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 RV+ DH RS FLIADG+ P+NEGRGYVLRRI+RRA+ + LG T +L L Sbjct: 239 RVVADHARSCCFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEV 298 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 MG AYPEL + +IE TL E+E+F KTL++GL LL+G L+ L KD+ + G FKLYD Sbjct: 299 MGQAYPELEARREVIEATLIREEEQFAKTLEQGLKLLEGELAQL-KDKTIPGATVFKLYD 357 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P D+ DI RG ID F + QR RAR +G + ++ + Sbjct: 358 TYGFPTDLTADIARERGFI-IDEAGFEVEMAAQRQRAR------DAGKFAVDYNNIVKVE 410 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 G TQF GY T G IV AI + G V+E G + Sbjct: 411 GETQFDGYTN----------------------TTGQGQIV-AIYKDGVQVDEVSEGDEAL 447 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 +V +QTPFYAE+GGQ+GDTG + ++ D KK+ G FVH IV G L+T ++ Sbjct: 448 IVLNQTPFYAESGGQIGDTGIFKNETGIFEVQDT-KKSGGAFVHQGIVTVGNLKTSQNVE 506 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 + R + NHSATHLLH AL ILGSHV Q GS + D LRFD + +P++ +L Sbjct: 507 AIVKADIREATARNHSATHLLHAALRQILGSHVQQKGSLVASDILRFDFANDQPVSFEQL 566 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSS 691 + +E VN I N V T +++ E A A GA L G KY D VRV+S+ D S Sbjct: 567 QQVERLVNAEIIANTAVTTELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSI 626 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751 LCGG HV TG+I L I SE + AG+RRIEA+TG +A + D ++ + S LK Sbjct: 627 ELCGGIHVKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQHINSLLKA 686 Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN-------VEDL--SCHKIADVNFMSHIIS 802 + V RV+ E LQ K+ QLN DL IA + + Sbjct: 687 QKDQTVERVQANVELVSALQ----KQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQ 742 Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862 VD+K L+++ D+++ K+++ +I+L G+ + K S+L V A D+ + A Sbjct: 743 GVDAKALRNLHDSVKSKLENAVIVLAGVEGD-KVSLLASVASQYTANLKAGDIIKHLATE 801 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 L GG GGG+P +AQ G P K Q +A + ++L++ Sbjct: 802 L-GGKGGGKPDLAQGGAPLNEKFGQVMAALPAWLEQ 836 >gi|260361824|ref|ZP_05774840.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030] gi|308114481|gb|EFO52021.1| alanine--tRNA ligase [Vibrio parahaemolyticus K5030] Length = 788 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/750 (46%), Positives = 465/750 (62%), Gaps = 48/750 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + +R FL+FF+ GH+++ SSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 STDEVRNAFLKFFESKGHQIVESSSLVPHNDPTLLFTNAGMNQFKDCFLGLEKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ LT L Sbjct: 64 TAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKEDAISFAWEFLTDVLKLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRI--------TTNDNFWSMAETGPCGPCSE 174 RL +TVY+ D+EAF +W K G+ AD+IIRI +DNFW M +TGPCGPC+E Sbjct: 124 DRLLVTVYETDDEAFDIWNKKVGVPADRIIRIGDKKGGKPYESDNFWQMGDTGPCGPCTE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG PG+ EE G+R+IEIWN VFMQF + LPK S+DTGMG+ER+ Sbjct: 184 IFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQFNRHADGTMEPLPKPSVDTGMGIERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+ID+F+ LI+A+ +V G YE + + RVI DH+RS SFLI DG++P+ Sbjct: 244 SAIMQGVHSNYEIDVFQALIKAAAEVIG--YEDLSNQSLRVIADHIRSCSFLIVDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+ L MG+A EL + + ++E+ LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGVLADIMGTAGEELKRQQAVVEKVLRI 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E FG+TL+RG+ +L+ L +L ++L+G+ FKLYDT+G P D+ D+ R A I Sbjct: 362 EEENFGRTLERGMAILNEALDNL-DGKVLDGETVFKLYDTYGFPADLTNDVAREREFA-I 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A+EEQR RAR + G+ I + T+F GY +G Sbjct: 420 DEEGFEKAMEEQRQRAR-EAGQFGTDYNAAIKVDTQ-----TEFCGYVGTKG-------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 SS V A+ +G V+ +G K +V +TPFYAE+GGQ GD G Sbjct: 466 ---------------SSSVAAMFVEGNEVDSLSAGDKAIIVLGETPFYAESGGQCGDAGE 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + ++ D QK I HH ++ G+L + +D + R +S+NHSATHLL Sbjct: 511 IRTEAGVFRVEDTQKLGNAI-AHHGVMAEGVLAKGDEVATIVDAERRAAISLNHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T+AELK +E VN I +N + T + Sbjct: 570 HAALRQVLGEHVTQKGSLVKAENLRFDFSHLEAVTAAELKEVERLVNAQIRRNHVIETNV 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ E A GA AL G KY+D VRV+S+ G S+ LCGG H S+TG+I L I SE Sbjct: 630 MDIESAKKKGAMALFGEKYDDEVRVLSM-----GDFSTELCGGIHASNTGDIGLFKITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 S I AGIRRIEA+TG+ A + Q K + Sbjct: 685 SGIAAGIRRIEAVTGEAALDAIEAQAAKYE 714 >gi|152979781|ref|YP_001352273.1| alanyl-tRNA synthetase [Janthinobacterium sp. Marseille] gi|205830071|sp|A6SVH6|SYA_JANMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151279858|gb|ABR88268.1| alanyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 869 Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/907 (41%), Positives = 535/907 (58%), Gaps = 56/907 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S IR FL+FF+ GH ++ SS L+P NDPTLMFTNSGMV FK++F G++K Y T Sbjct: 2 NSSEIREKFLKFFESKGHTIVASSPLVPGNDPTLMFTNSGMVQFKDVFLGEDKRPYTRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A++ +W+LLT+ + L Sbjct: 62 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALKWSWELLTQVYGLPA 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L TVY ED+EAF +W K GL +++IRI N DNFW MA+TGPCGPCSEI Sbjct: 122 EKLLATVYIEDDEAFDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS E+G+R+IEIWN VFMQF+ LP +DTGMGLER+A Sbjct: 182 FYDHGPHIAGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVKPLPAPCVDTGMGLERLA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+ID F+ LI+A+ + T K NN + +VI DH+R+++FL+ADG++P+N Sbjct: 242 AILQHVHSNYEIDTFEALIKAAGRETNTKDLSNNSL--KVIADHIRATAFLVADGVIPSN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG +P L+ L +MG AYP+L I + L++E Sbjct: 300 EGRGYVQRRIIRRAIRHGYKLGQKKPFFHKLVKDLVEQMGEAYPKLKADAQRITDVLKAE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LD L+ G ++L G+VAFKL+DT G PLD+ D+ RGL+ +D Sbjct: 360 EERFFETLANGMEILDAALA--GDAKVLPGEVAFKLHDTFGFPLDLSADVCRERGLS-VD 416 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+E+Q++ RA G E+ +++ F GY+ L Sbjct: 417 EAGFAAAMEKQKAAGRA----AGKFKMER---AVEYTGAGNTFTGYEHLE---------- 459 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + V + +G V GQ VV D TPFY+E+GGQ+GD G Sbjct: 460 -------------EQATVVGLYFEGTAVPSLKEGQAGIVVLDTTPFYSESGGQVGDQGFI 506 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +G++ + D QK ++ HH + +G L + +D R NHS TH++H Sbjct: 507 SAEGVQFGVEDTQKIKADVYGHHGVQTQGTLTVGDKVKAAVDGARRAATMRNHSVTHIMH 566 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + PD RFD H+ P+T ++ IE VN I N R+M Sbjct: 567 KALREVLGDHVQQKGSLVDPDKTRFDFAHNAPVTREQILEIEKRVNAEILLNSDTQARVM 626 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY + VRV+ + S LCGGTHVS TG+I L ++SES Sbjct: 627 DIESAQKTGALMLFGEKYGETVRVLDIG------SSRELCGGTHVSRTGDIGLFKVMSES 680 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEAITG +A ++ + + S A+ +K + R+ ++ ++ + L ++ Sbjct: 681 GVAAGVRRIEAITGAKALGYVQDLEAVIHSAAAMMKTQPAELEPRLAQVLDQMKALEREV 740 Query: 773 IHAKRKLQLNVEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + DV ++ ++ D L++ MD L+ K+++ I+L Sbjct: 741 GALKGKLASSQGDELLAQAVDVKGIKVLAAVLEGADVATLRNTMDKLKDKLKTAAIVLAA 800 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + K S++ VT D + + A DL A+ + GG GGG+P MAQ+GG + + A+ Sbjct: 801 VN-DGKVSLIAGVTADSIAKVKAGDLVNFVAQQV-GGKGGGKPDMAQAGGTDASGLPTAL 858 Query: 890 AGVASFL 896 GVA+++ Sbjct: 859 QGVAAWV 865 >gi|297539363|ref|YP_003675132.1| alanyl-tRNA synthetase [Methylotenera sp. 301] gi|297258710|gb|ADI30555.1| alanyl-tRNA synthetase [Methylotenera sp. 301] Length = 901 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/925 (40%), Positives = 543/925 (58%), Gaps = 72/925 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y T+ Sbjct: 12 NEIRKAFLDFFASKGHQIVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRTYTRATSS 71 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ F L + + Sbjct: 72 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKDDAIAYAWELLTEVFKLPKDK 131 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L +TVY +D+EA+ +W G+ A++IIRI N DNFW M +TGPCGPC+EIF+ Sbjct: 132 LTVTVYADDDEAYNIWHDKIGVPAERIIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 191 Query: 178 DQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G+ GG PGS E+G+R+IEIWN VFMQF + LPK S+DTGMGLER++ V Sbjct: 192 DHGDHHFGGPPGSPDEDGDRFIEIWNNVFMQFNRDEAGMMHPLPKPSVDTGMGLERISAV 251 Query: 237 LQEKTNNYDIDLFKHLIQASEQ---------------VTGMKYEGNNIVNH---RVIVDH 278 LQ NY+ID+FK LI A+ + ++ +K + I+N+ +V+ DH Sbjct: 252 LQHVHANYEIDIFKTLIDAAAREVFVTPSNQTYSVASLSELKSKYPEILNNPSLKVLADH 311 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 +R+ SFLIADG++P NEGRGYVLRRI+RRA+ + LG L+P L +MG AYP Sbjct: 312 IRACSFLIADGVIPGNEGRGYVLRRIIRRAIRHGYKLGTRAAFFYKLVPDLVKQMGEAYP 371 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396 EL+ + I + L+ E++RF +T++ G+ +L+ L+ + K + + NGD+AFKL+DT G Sbjct: 372 ELVANQSRIMDMLKLEEDRFFETIENGMEILETELATMSKANNTLFNGDLAFKLHDTFGF 431 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+ DI C +D +F+ A+ Q+ +ARA K+ +L+ T Sbjct: 432 PLDLTADI-CRERDVNVDSAAFDAAMTRQKEQARA-------AGKFKMATNLEYNGANTD 483 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 F GY+ L S K+L A+ + G V + G++ VV D Sbjct: 484 FKGYETLEASA------KIL-----------------ALYKDGTAVNQLSEGEQGVVVLD 520 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 TPFYAE+GGQ+GD G + + D QK +F HH I++ G + SL ++D Sbjct: 521 NTPFYAESGGQVGDNGVLKAENGIFAVEDTQKIQAAVFGHHGILKTGKISVGESLKASVD 580 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R + NHSATHL+H AL +LG+HV Q GS + D RFD H+ P+T E+ +E Sbjct: 581 IAARANIMRNHSATHLMHKALRQVLGTHVQQKGSLVDADKTRFDFLHNAPMTDEEIAKVE 640 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN I N P R M+ E A +GA L G KY D VRV+ + ++ LCGG Sbjct: 641 AIVNAEILANAPTQAREMDIESAQKTGAMMLFGEKYGDIVRVLDIG------STTELCGG 694 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV+ TG+I L + +ES + AG+RRIEA TG A + Q + L++ LK + Sbjct: 695 THVNRTGDIGLFKVYAESGVAAGVRRIEAATGNGALKLINAQQALISQLSADLKAPTSEL 754 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKS 811 +V ++ + + L+ A+ K +L +DL+ +IA V ++ + D+ L+ Sbjct: 755 ASKVAQLSDHAKSLEKELARLKSKLASSQGDDLATQATEIAGVKVLAVTLEGADANTLRE 814 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 MD L+ K++S I+L ++ + K S+ VT DL + A +L A+ + GG GGG+ Sbjct: 815 TMDKLKDKLKSAAIVLASVN-DGKVSLAAGVTSDLTGKIKAGELVNFVAQQV-GGKGGGK 872 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG + ++ +A+AGV+ ++ Sbjct: 873 PDMAMAGGTDASQLPKALAGVSDWV 897 >gi|254796550|ref|YP_003081386.1| alanyl-tRNA synthetase [Neorickettsia risticii str. Illinois] gi|254589786|gb|ACT69148.1| alanyl-tRNA synthetase [Neorickettsia risticii str. Illinois] Length = 848 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/769 (45%), Positives = 476/769 (61%), Gaps = 48/769 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R F++FF KNGH LPS+SL+P +DP+LMF N+GMVPFK F +K + ++ T Sbjct: 2 IDGLRKKFIDFFVKNGHTHLPSASLVPKDDPSLMFVNAGMVPFKEYFADVKKAPFSSIVT 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAW +T+E L + Sbjct: 62 AQKCVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELKLSKE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LYITVY ED+EAF++W K++G KI RI+T+DNFW M + GPCGPCSEIF+D GE + Sbjct: 122 KLYITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEHL 181 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G +P +++ GER +EIWNLVFMQ+ ++ E + IDTGMGLER+A +L+ + Sbjct: 182 SGDIPEDNKDPGERCVEIWNLVFMQYIRKQSGELARMECPCIDTGMGLERVAAILEGTDD 241 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NY LF+ +++ S++VTG K +N H+VI DHLRS+SFLIADG+LP N GR YVLR Sbjct: 242 NYKTKLFEAIVKESQKVTGNK---DNQAAHKVIADHLRSASFLIADGVLPGNTGREYVLR 298 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ Y+ +LG+ L+ L L MGS Y EL +AK LI +TL E+E F TL Sbjct: 299 RIIRRAVRYSHVLGFDTVLLPKLFWVLEECMGSYYQELTRAKNLILDTLTLEEESFRNTL 358 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 G+ LL+ V S + + L+GD+AF LYDTHG PLDI D+L + ++ +D F + + Sbjct: 359 KSGMKLLEEVSSSMKGGDTLSGDIAFTLYDTHGFPLDITIDVLKEKKIS-VDEERFAERM 417 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 + QR A+A + + T+ ++ ++G T FIGY+ G Sbjct: 418 KMQRLLAQASRMNDTAQTSSYEVKAVFLEHGKTPFIGYENFTG----------------- 460 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 +++ AI E ++ ++ DQT FY E+GGQ D G G+ L+ Sbjct: 461 ------LALILAIT-------EKEGSNELTIILDQTIFYPESGGQESDQGIIEGENTTLK 507 Query: 543 ITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + V K EG+ +H + +G I R E + L ID R L+ NHSATH+LHH L Sbjct: 508 VEKVYKSTEGVILHECKIIKGQAISRGE-KVNLKIDINRRNSLARNHSATHVLHHVLRKR 566 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+HVSQ GS +TP+ LRFD +HS+PIT EL IED +N +I + PV+T + +DAI Sbjct: 567 LGTHVSQRGSLVTPNRLRFDFSHSQPITEEELSKIEDCINLMIWDDHPVITEVKKTDDAI 626 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA L G KY+D VRVVS+ + LCGGTHV + I L+ I+S SS+ G+ Sbjct: 627 RDGAIGLFGEKYDDTVRVVSIG------EAVELCGGTHVKKSSSIGLVKILSASSVAHGV 680 Query: 721 RRIEAITG----QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 RRIEA+T Q R + Q +L S LK Q + + +++ Sbjct: 681 RRIEAVTHLTALQYMREEIQAQLYQLNEHQSKLKTMQKSHQKEITSVYQ 729 >gi|302342573|ref|YP_003807102.1| alanyl-tRNA synthetase [Desulfarculus baarsii DSM 2075] gi|301639186|gb|ADK84508.1| alanyl-tRNA synthetase [Desulfarculus baarsii DSM 2075] Length = 884 Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/907 (41%), Positives = 543/907 (59%), Gaps = 45/907 (4%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL +F GH+++ SS L P +DP+L+FTN+GMV FK +F GQE+ Y T Sbjct: 6 NELRGKFLAYFASKGHQVVASSPLAPKDDPSLLFTNAGMVQFKQVFLGQEQRPYTRAATS 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC RA GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK+ A+ AW+LLT F LD + Sbjct: 66 QKCFRASGKHNDLENVGRTPRHHTFFEMLGNFSFGDYFKQDAVTFAWELLTVGFGLDPEK 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+++V+ D+EA +LW+ G+ ++I+R+ DNFWSM +TGPCGPCSEI D G + Sbjct: 126 LWVSVHHSDDEAAELWQSEVGVRPERIVRLGDKDNFWSMGDTGPCGPCSEIHIDMGPEMG 185 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + + RY+E+WNLVFMQ+ + + LPK SIDTGMGLER+A V+Q + Sbjct: 186 CGRPDCAVGCDCNRYLELWNLVFMQYNRDASGQTTPLPKPSIDTGMGLERIAGVVQGVRS 245 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NYD DLF +I+ + Q+T Y ++ ++ RVI DH R+ +FL+ADGILP+NEGRGYV Sbjct: 246 NYDSDLFTPIIERACQITQTAYGQSDQADISLRVIADHARACAFLVADGILPSNEGRGYV 305 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA + R LG +P + + + EM AYP L A+ +++ + SE+ERF + Sbjct: 306 LRRILRRAARHGRKLGAQKPFLHQVAMKVIDEMMGAYPALGDARAFVDKVVTSEEERFNE 365 Query: 361 TLDRGLVLL-DGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLD GL LL + + K + L G+VAFKLYDT+G P+D+ + I C G+D F Sbjct: 366 TLDTGLKLLAEAIEEAKAKGQTALPGEVAFKLYDTYGFPVDLTRTI-CEEEALGVDEPGF 424 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 A+ +Q++R+RA G G L+ K T F GYD L G Sbjct: 425 EAAMGQQKTRSRASWKGSGEEGLSGPLAELRAKGFKTAFTGYDGLEG------------- 471 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 V A++ G++VE +GQK +V DQTPFY E+GGQ GD+G A G Sbjct: 472 ----------QGQVVALIVDGQMVERVGAGQKALLVCDQTPFYGESGGQAGDSGRAEGPA 521 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++ K + H V G L L LT+D+ R + + NH+ATHLLH AL Sbjct: 522 GKAVVSTASKPGGDMVAHEITVSEGYLAVGERLNLTVDHGPRGETASNHTATHLLHAALR 581 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS ++P LRFD +H + +T ++ +E VN+ + N+ V M E+ Sbjct: 582 QVLGDHVKQAGSMVSPQRLRFDFSHFEAMTPQQMGQVEAMVNEGVLANIAVTVTEMPAEE 641 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ SGA AL G KY D VRVV + G+ S LCGGTHV TG+I L +V+ESS+ A Sbjct: 642 ALGSGAMALFGEKYGDTVRVVEIP----GL-SKELCGGTHVKRTGDIGLFKLVAESSVAA 696 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIH 774 G+RR+EA+TG+ A + + +++L A LK + RV ++ E R+++ + Sbjct: 697 GVRRVEALTGRAALAAVRAMEDELHKAAGLLKARPTELAERVAKLMATLKEREREVEQLK 756 Query: 775 AKRKLQLNVEDLSCHKI--ADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVGIS 831 AK DL + D + + EVDS K L+++ D + +++ SG+++L G + Sbjct: 757 AKLAGGGGGRDLLAGVVNHGDARVLVQKV-EVDSAKALRALSDEIIERLGSGVLVL-GAA 814 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E KA +L V++DL RF+A ++ + A ++ GGGGGGRP MAQ+GG N + DQA+ Sbjct: 815 AEGKAFLLARVSKDLQGRFHAGNIVKELAPLV-GGGGGGRPDMAQAGGQNPDALDQAMER 873 Query: 892 VASFLKK 898 ++ L + Sbjct: 874 ASAMLAE 880 >gi|319941405|ref|ZP_08015733.1| alanyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B] gi|319805025|gb|EFW01855.1| alanyl-tRNA synthetase [Sutterella wadsworthensis 3_1_45B] Length = 875 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/915 (40%), Positives = 537/915 (58%), Gaps = 64/915 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR TFL+F++ GH ++ SS ++P NDPTL+FTN+GM FK+++ G + Y+ T Sbjct: 2 KVADIRRTFLKFYESKGHTIVASSPVVPGNDPTLLFTNAGMNQFKDVYLGFDHRPYKRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ F L Sbjct: 62 TSQKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKDAIHFAWELLTEHFHLPP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA+ +W K G+ AD+I+RI N DNFW M +TGPCGPCSEI Sbjct: 122 EKLWVTVYAEDQEAYDIWHKEVGIPADRIVRIGDNKGARYMSDNFWMMGDTGPCGPCSEI 181 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RY+EIWNLVFMQF + K E LP+ SIDTGMGLER+A Sbjct: 182 FYDHGPSVQGGPPGSPEEDGDRYMEIWNLVFMQFYRDEKGEMHKLPRPSIDTGMGLERIA 241 Query: 235 TVLQEKTNNYDIDLFKHLIQAS----EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 TVLQ +NYDIDLFK+L+ A+ E V+ + + N+ + +VI DH+R+ +F +ADG+ Sbjct: 242 TVLQGVHSNYDIDLFKNLLAAAKAAVESVSTVPADINS-PSLKVIADHIRACAFCVADGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGR YVLRRI RRA+ + LG P L+ A+ EMG AYPEL+ + IE+ Sbjct: 301 VPGNEGRAYVLRRICRRALRHGYKLGARGPFFYKLVDAVRKEMGEAYPELMNHE--IEKV 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + +E+ RF +TL +G+ +LD ++ K +L GDV FKL+DT+G P D+ D+ RG Sbjct: 359 IEAEERRFLQTLSKGMDILDAAIAE-NKTGVLPGDVVFKLHDTYGFPADLTADVCRERG- 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 IS N A E + + K+ L T F GY+ L + Sbjct: 417 -----ISVNTA--EFDAAMERQRAAARASAKFKMAQGLDYTGADTVFTGYETL-----TE 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 +D +V+ A+ GE V+ +G + VVF++TPFYAE+GGQ+GD Sbjct: 465 KDAEVV-----------------ALYANGEPVDRVEAGSECVVVFNRTPFYAESGGQVGD 507 Query: 531 TGCAIGDGIRLQITD---VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G A L++ D V+ G+ H V G + L +D R + NH Sbjct: 508 QGEAKNATAILKVLDTFRVKAAVTGLQCH---VAEGHVAVGDKFDLAVDEARREATARNH 564 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 S THL+H AL T+LG V+Q GS +TP+ RFD ++ KP+T+ ++ +E VN I +N Sbjct: 565 SVTHLMHFALRTVLGDKVAQKGSLVTPESTRFDFSYGKPVTAEQIAEVERIVNAQILKNT 624 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV TR++ E+A +GA L G +Y + VRV+ + S+ CGGTHV +TG+I Sbjct: 625 PVQTRVLPIEEAKKTGAVMLFGERYGEVVRVLDIG------KSTEFCGGTHVKATGDIGF 678 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 +VSES I AG+RRIEA+TG A S + + L + A K V + + Sbjct: 679 FKVVSESGIAAGVRRIEAVTGMNALSWVQNTESLLAATAREFKAPVSEVPVKAADAIATI 738 Query: 768 RKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822 R L+ + K ++ D + DV + +++ + D+K L+ MD ++ K+ S Sbjct: 739 RTLEKGIDQLKSQMAAKAGDALIAEACDVKGVKVLLARLDGADAKALRETMDKVKDKLGS 798 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + +L ++ E + + VT+DL R A +LA A +L GG GGG+P +A +GG + Sbjct: 799 AVAVLASVTGEDRVQLAAGVTKDLTGRVKAGELAGFVAGLL-GGKGGGKPDLAMAGGSDV 857 Query: 883 NKADQAIAGVASFLK 897 K +A+ ++++ Sbjct: 858 KKLPEALEAARAWIE 872 >gi|205830260|sp|A5D3F4|SYA_PELTS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 877 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/899 (40%), Positives = 551/899 (61%), Gaps = 51/899 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR ++L+FF+K GH++LPS+SLIP NDP++++T +GMVPFK FTG KP Y VTT Sbjct: 4 NEIRESYLKFFEKKGHKILPSASLIPLNDPSILWTAAGMVPFKPFFTGAAKPEYTRVTTC 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R D+++VG+T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ L + Sbjct: 64 QKCIRT----PDIESVGKTARHHTFFEMLGNFSFGDYFKESAIPWAWEFVTEHLRLPADK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+I+++ +D+EAF++W K G+ A +I+R+ + NFW + GPCGPCSEI+ D G Sbjct: 120 LWISIFLDDDEAFEIWNKTVGVPAGRIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGAERG 178 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + +R++EIWNLVF+QF + + L IDTG GLER+A+V+Q Sbjct: 179 CGSPECKVGCDCDRFLEIWNLVFIQFFKDEEGNYTPLTSKGIDTGFGLERVASVMQGVPT 238 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N+D DLF+ ++ + + G+KY +G V +VI DH R+ +F +ADG LP+NEGRGYV Sbjct: 239 NFDTDLFREIMDFTAGLFGLKYGVDGRVDVALKVIADHCRAITFAVADGALPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RR++RRA+ + RLLG +P + + A+ +MG YPEL+ + + +R E+ERFG+ Sbjct: 299 IRRLLRRAVRFGRLLGIEDPFLHEVSGAVVRQMGRVYPELVTQREHVFRVIRREEERFGE 358 Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL +G +L+ +++ + +++G+ AF+LYDT+G PL++ Q++ +GL +D F Sbjct: 359 TLAQGTEMLNRLIAEARQAGSAVVSGEDAFRLYDTYGFPLELTQEMAGEQGLT-VDTDGF 417 Query: 419 NQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 +A+EEQR RAR+ SG + ++ ++E+ G T F+GYD L + Sbjct: 418 GRAMEEQRQRARSARQETDYISGR-DAMFKKMREEVGETVFVGYDALEAT---------- 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V IVQ G+ +E A +G++VE + D TPFYAE+GGQ+ D G Sbjct: 467 -------------GRVLRIVQGGKRLESAQAGEEVEFILDVTPFYAESGGQVSDRGKVTA 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++I +V K E +FVH V GIL+ ++ +D R NHSATHLLH A Sbjct: 514 ADLEVEIHEVTKPVENLFVHRGKVVAGILKEHDTVTARVDPARRAATCRNHSATHLLHKA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS + P+ LRFD TH T EL+ +E+ VN ++ LPV + Sbjct: 574 LKEVLGGHVNQAGSLVEPERLRFDFTHYAAATPEELQKVEELVNRMVLSALPVEAFETSL 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +A GAAAL G KY +RVRVV + G S LCGGTH+ +T E+ L ++ ESS+ Sbjct: 634 AEARKMGAAALFGEKYGERVRVVKM-----GDFSLELCGGTHLRNTAEVGLFKLLGESSV 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG+ A S++ ++E+L +A +K + V RVE + + R L+ + Sbjct: 689 GAGLRRIEAVTGEGALSYVKAKEEQLAEIARLVKAAPHEAVRRVEGLLQTVRDLEAENEA 748 Query: 777 RKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + +L V+DL ++ V ++ + D L+ ++D L+ ++ SG+I+L G + Sbjct: 749 LQARLARYQVQDLMDRLREVKGVKVLAGQAAAPDMDSLRGMVDLLRDRVGSGVIVL-GSA 807 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E + +++ VT+DL+++ +A L + A V+ GGGGGGRP MAQ+GG + ++ +A+ Sbjct: 808 GENRVNLVAAVTKDLVEKGLHAGKLVKELAPVV-GGGGGGRPEMAQAGGKDPSRLKEAL 865 >gi|91788770|ref|YP_549722.1| alanyl-tRNA synthetase [Polaromonas sp. JS666] gi|123355561|sp|Q129G8|SYA_POLSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|91697995|gb|ABE44824.1| alanyl-tRNA synthetase [Polaromonas sp. JS666] Length = 878 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/907 (40%), Positives = 535/907 (58%), Gaps = 56/907 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR +FL+FF GH ++PSSSL+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 11 TVADIRKSFLDFFASKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 70 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT + L Sbjct: 71 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTDVYKLPA 130 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L+ TVY +D+EA+ +W K GL ++++RI N DNFW MA+TGPCGPCSEI Sbjct: 131 DKLWATVYIDDDEAYDIWTKEIGLPPERVVRIGDNKGAKYASDNFWMMADTGPCGPCSEI 190 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS E+ G+RYIEIWN VFMQF+ Q LP +DTGMGLER+A Sbjct: 191 FYDHGPEIAGGPPGSPEQDGDRYIEIWNNVFMQFDMQPDGSVKPLPAPCVDTGMGLERLA 250 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+ID+F LI+A+ + TG K N + RVI DH+R+++FL++DG+ P+N Sbjct: 251 AILQHVHSNYEIDVFDALIKAAARETGEKDLNNKSL--RVIADHIRATAFLVSDGVNPSN 308 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L MG AYP+L + I L++E Sbjct: 309 EGRGYVQRRIIRRAIRHGYKLGKKTPFFHKLVADLARLMGDAYPKLRTDEARITAVLKAE 368 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL+ G+ +LD L+ G ++L GDVAFKL+DT+G PLD+ D+ RG+ +D Sbjct: 369 EERFFETLEIGMTILDTALA--GGAKVLPGDVAFKLHDTYGFPLDLSADVCRERGV-DVD 425 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A++ Q+++ARA K+ +L+ F GY+ L +E K Sbjct: 426 ETGFNAAMDRQKNQARA-------AGKFKMDRALEYAGSGNTFTGYERL------EETAK 472 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ A+ G V GQ VV D TPFYAE+GGQ+GD G Sbjct: 473 IV-----------------ALYADGVPVAALTKGQSGVVVLDTTPFYAESGGQVGDEGEL 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 I + D K ++ HH VE+G L + ++ R NHSATHL+H Sbjct: 516 ISGSAHFAVGDTLKIKSDVYGHHGTVEQGTLNVGDHVNARVNLAVRAATVRNHSATHLMH 575 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + + RFD H+ P+T +++ IE VN I N+ +M Sbjct: 576 KALREVLGEHVQQKGSLVNAERTRFDFAHNAPVTDDQIREIEARVNAEILSNVATDASVM 635 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A +GA L G KY D+VRV+S+ S LCGGTHV+ TG+I L IV+ES Sbjct: 636 DMEAAQKTGAMMLFGEKYGDKVRVLSIG------SSKELCGGTHVTRTGDIGLFKIVAES 689 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RR+EA+TG+ A ++L + +++ A LK S + R+ ++ ++ + L ++ Sbjct: 690 GVAAGVRRVEAVTGENALAYLQSLESTVQAAAGSLKASPTELQQRIGQVLDQVKSLEKEI 749 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVG 829 K KL + D + DV + + + + D++ L+ MD L+ K+++G+ +L Sbjct: 750 AALKGKLASSQGDELMAQAFDVKGLKVLAARLEGADARTLRETMDKLKDKLKTGVFVLAA 809 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + VT D + A +L A+ + GG GGG+ MA +GG + ++ D A+ Sbjct: 810 VDG-NKVQIAAGVTADSVTVVKAGELVNFVAQQV-GGKGGGKADMAMAGGTDASRLDDAL 867 Query: 890 AGVASFL 896 V +++ Sbjct: 868 KSVRAWV 874 >gi|88608446|ref|YP_506054.1| alanyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama] gi|123492337|sp|Q2GEP2|SYA_NEOSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|88600615|gb|ABD46083.1| alanyl-tRNA synthetase [Neorickettsia sennetsu str. Miyayama] Length = 848 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/728 (46%), Positives = 458/728 (62%), Gaps = 46/728 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R F++FF KNGH LPS+SL+P +DP+LMF N+GMVPFK F + + ++ T Sbjct: 2 IDGLRKKFIDFFVKNGHTYLPSASLVPKDDPSLMFVNAGMVPFKEYFVDVRRAPFSSIVT 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKERAI+LAW +T+E L ++ Sbjct: 62 AQKCVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELTLSKK 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LYITVY ED+EAF++W K++G KI RI+T+DNFW M + GPCGPCSEIF+D GE + Sbjct: 122 KLYITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEHL 181 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQF--EQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G +P ++ GERY+EIWNLVFMQ+ EQ + R P IDTGMGLER+A +L+ Sbjct: 182 SGDIPEDKKDPGERYVEIWNLVFMQYIREQSGELARMECP--CIDTGMGLERVAAILEGT 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +NY LF+ +++ S+ VTG K +N H+VI DHLRS+SFLIADG+LP N GR YV Sbjct: 240 DDNYKTKLFEAIVKESQNVTGNK---DNQAAHKVIADHLRSASFLIADGVLPGNTGREYV 296 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ Y+ LG+ L+ L L MGS Y EL +A+ LI +TL E++ F Sbjct: 297 LRRIIRRAVRYSHALGFDTVLLPKLFWVLKEWMGSHYQELTRAENLILDTLTLEEQSFRN 356 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL G+ LL+ V S + + + L+GD+AF LYDTHG PLDI DIL R ++ +D F + Sbjct: 357 TLKSGMKLLEEVSSSMKEGDTLSGDIAFTLYDTHGFPLDITVDILKERKIS-VDEEGFAE 415 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 ++ QR A+A + + T+ ++ ++G T FIGY+ Sbjct: 416 RMKMQRLLAQASRMKDMAQTSSYEVKAVFLEHGKTPFIGYENF----------------- 458 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 G++ I+ ++G K+ ++ DQT FY E+GGQ D G G+ Sbjct: 459 -----TGLALILAITEKEG--------SNKLTIILDQTIFYPESGGQESDQGIIEGENTL 505 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHSATHLLHHALST 599 L++ V K EG+ +H + RG + + V L ID R L+ NHSATH+LHH L Sbjct: 506 LKVEKVYKSTEGVILHECTIIRGQVTSRGEKVNLKIDINRRNSLARNHSATHILHHVLRK 565 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG+HVSQ GS + P LRFD +HS+ IT EL IED +N +I + PV+T I ++A Sbjct: 566 RLGAHVSQRGSLVAPSRLRFDFSHSQSITEEELSKIEDCINLMIWDDHPVMTEIKKTDEA 625 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 I GA L G KY+D VRVVS+ + LCGGTHV + I L+ I+S SS+ G Sbjct: 626 IRDGAIGLFGEKYDDTVRVVSIG------EAVELCGGTHVKKSSAIGLVKILSASSVAHG 679 Query: 720 IRRIEAIT 727 +RRIEA+T Sbjct: 680 VRRIEAVT 687 >gi|15606507|ref|NP_213887.1| alanyl-tRNA synthetase [Aquifex aeolicus VF5] gi|6226165|sp|O67323|SYA_AQUAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|2983727|gb|AAC07289.1| alanyl-tRNA synthetase [Aquifex aeolicus VF5] Length = 867 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/893 (40%), Positives = 532/893 (59%), Gaps = 50/893 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ T+ Q Sbjct: 7 EIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQ 66 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ L + +L Sbjct: 67 KCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKL 126 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 Y++VY +DEEA+++W + G+ +++I R+ DNFW M + GPCGP SEI+ D+GE G Sbjct: 127 YVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEG 186 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ K +N++ Sbjct: 187 --------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFE 238 Query: 246 IDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 ID+ LIQ E+V+G KY + V RVI DHLR+ +F I+DG++P+NEGRGYV+RR Sbjct: 239 IDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRR 298 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRAM + LG P + + + M YPEL ++ ++ ++ E++RF KTL Sbjct: 299 ILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLK 358 Query: 364 RGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 G+ + V+ ++ + L+G F YDT+G P+D++ +I +GL GID+ F Sbjct: 359 AGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGFQCE 417 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 LEEQR RAR H + + + ++ LKE + F+GY+ + Sbjct: 418 LEEQRERARKH-FKVEAKKVKPVYSHLKELGKTSAFVGYEHMEWE--------------- 461 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 S +V + +G +V E G++ EVV +TPFY E GGQ+GD G D Sbjct: 462 -------SQVVGLVKGEG-LVSELKEGEEGEVVLKETPFYPEGGGQIGDAGIIESDKALF 513 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++ D QK EGI VH V +G L+ ++ +D + R + NH+ATHLLH AL +L Sbjct: 514 KVEDTQKPTEGIIVHIGKVLKGTLKVGDTVHARVDKERRWDIMRNHTATHLLHAALRNVL 573 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV Q GS + LRFD TH +T ELK +E+ VN+ I +NLPV M ++A+ Sbjct: 574 GEHVRQAGSLVADKYLRFDFTHFSALTEEELKRVEELVNEKIRENLPVNVMEMAYDEALK 633 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 +GA A+ KY +RVRV+S G S LCGGTHVS+TG+I I+SESS+ AG+R Sbjct: 634 TGAIAIFEEKYGERVRVISC-----GEFSKELCGGTHVSATGDIGYFKIISESSVGAGVR 688 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RKLQLIHAK- 776 RI A TG+ + + + LK +S L V + V+ ++EE+ EE R++Q + + Sbjct: 689 RIVAQTGRWSVETAFKEHQTLKKASSALGVGEEEVIQKIEELKEEIKDREREIQRLKQEL 748 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 KLQ+ E + + D + EV+ +EL+++ D L+++ + ++ + K K Sbjct: 749 LKLQIR-EVVKEENVGDFTLHYGVFEEVEPEELRNLADMLRQRTKKDVVFIAS-RKGDKI 806 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + +I V++++ D+ NA ++ R + GGGGGR +AQ GG +K +A+ Sbjct: 807 NFVIGVSKEISDKVNAKEVIR-EVGKVLKGGGGGRADLAQGGGKAPDKFPEAV 858 >gi|121605522|ref|YP_982851.1| alanyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2] gi|205830175|sp|A1VQK2|SYA_POLNA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120594491|gb|ABM37930.1| alanyl-tRNA synthetase [Polaromonas naphthalenivorans CJ2] Length = 874 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/868 (41%), Positives = 507/868 (58%), Gaps = 59/868 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 V+ IR TFL+FF GH ++PSSSL+P NDPTLMFTNSGMV FK++F G +K Y T Sbjct: 7 TVADIRKTFLDFFAAKGHTVVPSSSLVPGNDPTLMFTNSGMVQFKDVFLGVDKRPYVRAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESLKWAWELLTEVYKLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL TVY+ED+EA+ +W K GL +++IRI N DNFW MA+TGPCGPCSEI Sbjct: 127 ERLLATVYEEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 186 Query: 176 FFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G+ IPGG PGS E+G+R+IEIWN VFMQF LP +DTGMGLER+A Sbjct: 187 FYDHGDHIPGGPPGSPDEDGDRFIEIWNNVFMQFNMAEDGSVTPLPAPCVDTGMGLERLA 246 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+ID+F LI+A+ + TG G+ + RVI DH+R+++FL++DG+ P+N Sbjct: 247 AILQHVHSNYEIDIFDALIKAASRETGEADLGHKSL--RVIADHIRATAFLVSDGVNPSN 304 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LLG P L+ L MG AYP L I E L++E Sbjct: 305 EGRGYVQRRIIRRAIRHGYLLGKKTPFFHKLVADLAGLMGDAYPRLAADAQRITEVLKAE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL+ G+ +LD L+ K +L G+VAFKL+DT+G PLD+ D+ RGL+ +D Sbjct: 365 EERFFETLETGMQILDAALADGVK--VLPGEVAFKLHDTYGFPLDLSADVCRERGLS-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ--FIGYDLLRGSKFMKED 472 F A+ +Q+++ARA K Y T F GY+ L +E Sbjct: 422 EAGFTVAMNQQKAQARAAG---------KFKMDRALDYSGTGNVFTGYEHL------EET 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 K++ AI G +GQ +V D TPFYAE+GGQ GD G Sbjct: 467 SKII-----------------AIYADGVSAAALKAGQNGVIVLDTTPFYAESGGQAGDEG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 I R ++D K ++ HH + G L + ++ + R NHSATHL Sbjct: 510 ELISGSARFAVSDTLKIKADVYGHHGTLAEGTLNVGDHVSARVNKEVRAATVRNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV Q GS + + RFD H+ P+T A+++ +E VN I N Sbjct: 570 MHKALREVLGAHVQQKGSLVNAERTRFDFAHNAPMTDAQIREVEARVNAEILANSATDAS 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ E A +GA L G KY D VRV+S+ S LCGGTHV TG+I L IV+ Sbjct: 630 EMDMEAAQKTGAMMLFGEKYGDSVRVLSIG------SSKELCGGTHVGRTGDIGLFKIVA 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES + +G+RR+EA+TGQ A ++L + ++S A LK S + R+ ++ ++ + L Sbjct: 684 ESGVASGVRRVEAVTGQNALAYLQSLESTVQSAAGTLKASPSELQNRIGQVLDQVKALEK 743 Query: 771 QLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ K KL + D L + + ++ + D+K L+ MD L+ K+++ +I+L Sbjct: 744 EVAALKGKLASSQGDELMLQAVDVKGLKVLAARLEGADAKTLRETMDKLKDKLKTAVIVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDL 855 + K + VT D + A +L Sbjct: 804 AAVDG-SKVQIAAGVTSDSTGKVKAGEL 830 >gi|254469063|ref|ZP_05082469.1| alanyl-tRNA synthetase [beta proteobacterium KB13] gi|207087873|gb|EDZ65156.1| alanyl-tRNA synthetase [beta proteobacterium KB13] Length = 873 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/908 (40%), Positives = 546/908 (60%), Gaps = 59/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH ++ SSSL+P +DPTL+F N+GM FK+ F G +KP Y TT Sbjct: 7 NQIREIFLNFFREKGHTVVSSSSLVPSDDPTLLFANAGMNQFKDFFLGYKKPKYTTATTS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT+ F + + Sbjct: 67 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAIQYAWELLTERFQIPAEK 126 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRIT------TNDNFWSMAETGPCGPCSEIFFD 178 L +TVY ED EA+ +WK + + A+KII+I +DNFW M +TGPCGPCSEIF+D Sbjct: 127 LLVTVYHEDTEAYDIWKNVIKIPAEKIIKIADKSEKYISDNFWMMGDTGPCGPCSEIFYD 186 Query: 179 QGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G IPGG PGS E+G+R+IEIWNLVFMQF + E LPK S+DTGMGLER++ VL Sbjct: 187 HGADIPGGPPGSEDEDGDRFIEIWNLVFMQFNRNENGEMEALPKPSVDTGMGLERISAVL 246 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 Q +NY+IDLF++LI + Q K ++ + +VI DH+RS +FLI DG+ P+N+GR Sbjct: 247 QSVHSNYEIDLFQNLIHDAAQALKCKDLSHSSL--KVIADHIRSIAFLINDGVQPSNDGR 304 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ + LG TE +M +L +L M AYPEL+ IE+T E+++ Sbjct: 305 GYVLRRILRRAIRHGYKLGATESFLMPILNSLAKNMQEAYPELLTNIKKIEKTTLQEEDK 364 Query: 358 FGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+ G+ +L+ L+ K +L+G VAFKL+DT+G P+D+ DI C ID Sbjct: 365 FFETIANGMSILEQEINLTKKNKSTMLSGSVAFKLHDTYGFPIDLTADI-CREHNITIDQ 423 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+Q + EQ+++A+ + + K S+ T+F+ Y Sbjct: 424 AGFDQDMAEQKNKAK-------NASQFKAKDSIVIDIDPTKFLAY--------------- 461 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 N S +++I+ E E + +V ++PFYAE+GGQ+GDTG Sbjct: 462 --------THNEEFSTIESIILNNEPAVEVSANSTCNLVVKESPFYAESGGQVGDTGRIF 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + D QK G+ +H + RG L+ + ++ +D+ R + NHSATHLLH Sbjct: 514 NDQAEFVVHDTQKLPNGVILHIGELVRGQLKIKDPVLCQVDHIRRDSIKRNHSATHLLHK 573 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL TILG HV Q GS + RFD +HS ++ E++ +E VN+ I QN P +M Sbjct: 574 ALKTILGDHVEQKGSLVNEFRTRFDFSHSSALSETEIQQVEQIVNNEILQNNPTSAEVMA 633 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A SGA L G KY+D VRV+++ +S LCGGTHV++TG+I L I++ES Sbjct: 634 LDKAKKSGAMMLFGEKYDDEVRVLTIG------NSKELCGGTHVNATGDIGLFKILNESG 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +G+RRIEA TG + Q++ L + A LK ++ +V +++++ ++ + + A Sbjct: 688 ISSGVRRIEATTGVSLIQIIDKQNQLLNATAKELKTTKDDVAEKIKQVIDQVKTQEKTIA 747 Query: 776 KRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 +L+ + + S + + D +S I ++ +L++++D L+ I SGII+L Sbjct: 748 --QLKQKITNASKNDLLDQIEVIDGTKVLSTNIDNMEIPQLRALIDDLKNNIGSGIIILA 805 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 I+ + K ++ + VT+D+ ++F+A +A A ++ GG GGG+P MA +GG N N +A Sbjct: 806 TIN-QGKINIAVGVTKDITNQFHAGKIAGQLANMV-GGNGGGKPDMAMAGGQNINDLPEA 863 Query: 889 IAGVASFL 896 + + L Sbjct: 864 LIKIKKLL 871 >gi|330825460|ref|YP_004388763.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans K601] gi|329310832|gb|AEB85247.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans K601] Length = 873 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/909 (41%), Positives = 525/909 (57%), Gaps = 60/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 6 SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAA 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +I+ W+LLT+ + L Sbjct: 66 SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESIRWGWELLTQVYKLPP 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI N DNFW MA+TGPCGPCSEI Sbjct: 126 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D E G E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNHVFMQFDMKEDGSVTPLPAPCVDTGMGLERLA 245 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LI+A+ + T N + +VI DH+R+++FL+ADG++P N Sbjct: 246 AILQHVHSNYEIDLFDALIKAAARETHTADLANPSL--KVIADHIRATAFLVADGVIPGN 303 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I E LR E Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGCKTPFFHKLVKDLVQQMGGAYPKLREQQERITEVLRVE 363 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LDG L+ G L GDVAFKL+DT+G PLD+ D+ RG+ G+D Sbjct: 364 EERFFETLAHGMEILDGALA--GGARQLPGDVAFKLHDTYGFPLDLTCDVCRERGV-GVD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG--ATQFIGYDLLRGSKFMKED 472 F A+E Q+S ARA K +YG A +F GY+ L Sbjct: 421 EAGFAAAMEHQKSTARAAG---------KFKMDRALEYGGAANRFTGYEHL--------- 462 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +G + IV A+ G V +GQ VV D TPFYAE+GGQ+GD G Sbjct: 463 -------------SGTAKIV-ALYADGTSVAALKAGQSGVVVLDSTPFYAESGGQVGDQG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D QK ++ HH ++ G L ++ +D R NHS THL Sbjct: 509 LITAGSARFAVQDTQKIKADVYGHHGVLGEGTLNVGDTVQAQVDGAERAATMRNHSVTHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV Q GS + + RFD H+ P+T+ +++ IE VN I N R Sbjct: 569 MHKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTAGQIREIERRVNAEILANTATDAR 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A +GA L G KY + VRV+ + S LCGGTHV TG+I L +V+ Sbjct: 629 VMDIESAQKTGAVMLFGEKYGETVRVLDIGT------SRELCGGTHVQRTGDIGLFKVVA 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E + AG+RRIEA+TG+ A ++L G + + A+ LK + R+ ++ + L+ Sbjct: 683 EGGVAAGVRRIEAVTGENALAYLQGLEATVDQAAAALKAPAAELATRIAGALDQIKALEK 742 Query: 773 IHAKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ K +L ++L+ ++ + ++ + D+K+L+ MD L+ K+++ I+L Sbjct: 743 ELAQLKGKLASAQGDELASQAVEVKGIKVLAAKLDGADAKQLRETMDKLKDKLKTAAIVL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K + VT D R A +L A + GG GGG+P MA +GG + Q Sbjct: 803 AAVDGD-KVQLAAGVTADSTARVKAGELVNFVAGQV-GGKGGGKPDMAMAGGTDAEALPQ 860 Query: 888 AIAGVASFL 896 A+A VA+++ Sbjct: 861 ALASVAAWV 869 >gi|139436944|ref|ZP_01771104.1| Hypothetical protein COLAER_00077 [Collinsella aerofaciens ATCC 25986] gi|133776591|gb|EBA40411.1| Hypothetical protein COLAER_00077 [Collinsella aerofaciens ATCC 25986] Length = 878 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/897 (40%), Positives = 532/897 (59%), Gaps = 55/897 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR+ FL FF++ G +L PSSSL+P +DP+L+ N+GM FK + G++ Sbjct: 2 TTAEIRSKFLNFFEERGLKLYPSSSLVP-DDPSLLLANAGMNQFKEYYQGKKTMKEIGAI 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKCVR ND+D +G RH +FFEMLG+FSFGG K++A A++L+TKEF L Sbjct: 61 SCQKCVRT----NDIDCIGEDGRHLSFFEMLGDFSFGGVSKQQACAWAFELITKEFKLPL 116 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY TV+ ED+E +W+ + G++ D I R+ +DNFW+ TGPCGPCSEI+FD GE Sbjct: 117 DRLYFTVFTEDDETHDVWRSL-GVAEDHISRLGEDDNFWAAGPTGPCGPCSEIYFDMGEE 175 Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + G P + +R++E WNLVF Q+++Q LP ++DTGMGLERMA ++Q K Sbjct: 176 VGCGSPDCKPGCDCDRFLEFWNLVFTQYDRQEDGSMPELPHRNLDTGMGLERMAAIMQHK 235 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPANEG 296 T NYD DL +HLI+ E+++G Y+ ++ R+I DH R+ F+I+DGILP NEG Sbjct: 236 TANYDGDLMQHLIKLGEEISGKTYDADDYSGASRSLRIIADHSRAVDFMISDGILPGNEG 295 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 R YVLRR++RRA+ + RLLG + + + +MG AYPEL++ L++ + SE+E Sbjct: 296 REYVLRRLLRRAVFHGRLLGIEGAFLTKFIDEVNAQMGEAYPELLKNVALVKGIVASEEE 355 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG--ID 414 RF TLD G V LD L+ L + L GDVAFKL+DT G P+D+ +I G AG +D Sbjct: 356 RFSTTLDNGRVYLDEALAALAEGAALPGDVAFKLHDTFGFPIDLTVEIA---GTAGHDVD 412 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY--DLLRGSKFMKED 472 + F +E+Q++RARA++ G G+ +W L +K A++F GY D++ G+K Sbjct: 413 MDGFTACMEDQKARARANAKGDAWGSFNDVWVELSDKVAASEFDGYDNDVIEGAK----- 467 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V AIV+ GE VE A +G+ VEVV D+TPFYAE GGQ GD G Sbjct: 468 -------------------VVAIVRNGESVESAAAGEDVEVVLDRTPFYAEMGGQQGDAG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +G+ L + D K G++ H A V G L ++ +D + R L NH+ATHL Sbjct: 509 KLSAEGVVLTVADT-KNHNGLYAHVAHVADGTLTVGAAVTAALDAERRGFLRRNHTATHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG HVSQ GS +TP+ LRFD TH + ++S +LK++ED VN I + PVVTR Sbjct: 568 LDAALKQVLGEHVSQAGSLVTPEHLRFDFTHFEALSSEQLKAVEDLVNQQIFASKPVVTR 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M ++A A+GA AL G KY D VRVVSV ED S LCGGTH ++T EI L I+S Sbjct: 628 VMGIDEAKAAGAVALFGEKYGDVVRVVSVGAED-QPFSRELCGGTHAANTAEIGLFKIIS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ESS + +RRIEA+T + A ++ + + + A+ LK V R+E + E R+ Sbjct: 687 ESSTGSNVRRIEAVTSKGALDYMADRLALVDAAATALKCRVDEVPARMENLQAELRETS- 745 Query: 773 IHAKRKLQLNVEDLSCHKI---ADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826 K+ L D I +++ +++E +++ +L++V D + +K+ + Sbjct: 746 NKLKKALTGGSSDAISSAIEGAVELDGYKLVVAELQGLEAADLRNVWDTVHQKVAGPVAC 805 Query: 827 LVGISKEKKASVLIVVTED--LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +V EK L+ D + F+A ++ + A ++ G GGGRP+MAQ+GG N Sbjct: 806 VVASVTEKGTPALLAAGSDDAVKAGFHAGNVIKQIAGLV-DGRGGGRPNMAQAGGKN 861 >gi|319763265|ref|YP_004127202.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans BC] gi|317117826|gb|ADV00315.1| alanyl-tRNA synthetase [Alicycliphilus denitrificans BC] Length = 873 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/909 (41%), Positives = 524/909 (57%), Gaps = 60/909 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 6 SVADIRKTFLDFFAAKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRAA 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +I W+LLT+ + L Sbjct: 66 SVQTCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRESIHWGWELLTQVYKLPP 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 RL TVY ED+EA+ +W K GL +++IRI N DNFW MA+TGPCGPCSEI Sbjct: 126 ERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSEI 185 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D E G E+G+R+IEIWN VFMQF+ + LP +DTGMGLER+A Sbjct: 186 FYDHGPEIPGGPPGSPDEDGDRFIEIWNHVFMQFDMKEDGSVTPLPAPCVDTGMGLERLA 245 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +LQ +NY+IDLF LI+A+ + T N + +VI DH+R+++FL+ADG++P N Sbjct: 246 AILQHVHSNYEIDLFDALIKAAARETHTADLANPSL--KVIADHIRATAFLVADGVIPGN 303 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I E LR E Sbjct: 304 EGRGYVQRRIVRRAIRHGYKLGCKTPFFHKLVKDLVQQMGGAYPKLREQQERITEVLRVE 363 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +TL G+ +LDG L+ G L GDVAFKL+DT+G PLD+ D+ RG+ G+D Sbjct: 364 EERFFETLAHGMEILDGALA--GGARQLPGDVAFKLHDTYGFPLDLTCDVCRERGV-GVD 420 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG--ATQFIGYDLLRGSKFMKED 472 F A+E Q+S ARA K +YG A +F GY+ L Sbjct: 421 EAGFAAAMEHQKSTARAAG---------KFKMDRALEYGGAANRFTGYEHL--------- 462 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +G + IV A+ G V +GQ VV D TPFYAE+GGQ+GD G Sbjct: 463 -------------SGTAKIV-ALYADGTSVAALKAGQSGVVVLDSTPFYAESGGQVGDQG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D QK ++ HH ++ G L ++ +D R NHS THL Sbjct: 509 LITAGSARFAVQDTQKIKADVYGHHGVLGEGTLNVGDTVQAQVDGAERAATMRNHSVTHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LG+HV Q GS + + RFD H+ P+T+ +++ IE VN I N R Sbjct: 569 MHKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVTAGQIREIECRVNAEILANTATDAR 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E A +GA L G KY + VRV+ + S LCGGTHV TG+I L +V+ Sbjct: 629 VMDIESAQKTGAVMLFGEKYGETVRVLDIGT------SRELCGGTHVQRTGDIGLFKVVA 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E + AG+RRIEA+TG+ A ++L G + + A+ LK + R+ ++ + L+ Sbjct: 683 EGGVAAGVRRIEAVTGENALAYLQGLEATVDQAAAALKAPAAELATRIAGALDQIKALEK 742 Query: 773 IHAKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 A+ K +L ++L+ ++ + ++ + D+K+L+ MD L+ K+++ I+L Sbjct: 743 ELAQLKGKLASAQGDELASQAVEVKGIKVLAAKLDGADAKQLRETMDKLKDKLKTAAIVL 802 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K + VT D R A +L A + GG GGG+P MA +GG + Q Sbjct: 803 AAVDGD-KVQLAAGVTADSTARVKAGELVNFVAGQV-GGKGGGKPDMAMAGGTDAEALPQ 860 Query: 888 AIAGVASFL 896 A+A VA+++ Sbjct: 861 ALASVAAWV 869 >gi|257093631|ref|YP_003167272.1| alanyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046155|gb|ACV35343.1| alanyl-tRNA synthetase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 878 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/907 (40%), Positives = 530/907 (58%), Gaps = 54/907 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y TT Sbjct: 11 AEIRDKFLKFFESKGHQIVASSSLVPHADPTLLFTNAGMNQFKDVFLGFDKRPYLRATTS 70 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LL + L R Sbjct: 71 QKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAIRYAWELLVDVYGLPPDR 130 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+ +W + G+ A+++ RI N DNFW M +TGPCGPC+EIF+ Sbjct: 131 LWVTVYAEDDEAYDIWTREIGVPAERVERIGDNKGARYASDNFWMMGDTGPCGPCTEIFY 190 Query: 178 DQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G EEG+RYIEIWN VFMQF + LPK S+DTGMGLER A V Sbjct: 191 DHGEGIPGGPPGSPDEEGDRYIEIWNNVFMQFNRDEAGVMHPLPKPSVDTGMGLERTAAV 250 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ +NY+IDLF LI A+ + T + + RV+ DH+R+ +FLIADG++P NEG Sbjct: 251 LQHVHSNYEIDLFVRLIAAAARETASAELDSPSL--RVLADHIRACAFLIADGVIPGNEG 308 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LG L+P L EMGSAYPEL+ + + + LR E+ Sbjct: 309 RGYVLRRIIRRAIRHGYKLGARAAFFHRLVPDLVAEMGSAYPELVSQQARVTDVLRQEEV 368 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF +T++ G+ +L+G L+ L + NG AFKL+DT G PLD+ D+ RG++ +D+ Sbjct: 369 RFFETIEHGMSILEGELASLPGQGVFNGTTAFKLHDTFGFPLDLTADVCRERGVS-VDVA 427 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 +F+ A+ +Q+ +ARA ++ +L T F GY+ L Sbjct: 428 AFDAAMAQQKEQARA-------AGKFRMATALDYSGPPTTFHGYERL------------- 467 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V+ V A+ + G V+E G VV D+TPFYAE+GGQ+GD G Sbjct: 468 ----------DVTGKVLALYRDGSPVDELSEGDIGVVVLDETPFYAESGGQVGDRGVLQT 517 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 G + D QK +F HH +V G+LR + + +D R + NHSATHL+H A Sbjct: 518 AGGIFAVEDTQKIQAAVFGHHGVVRTGVLRVDDGVAAKVDVLARARTVRNHSATHLMHKA 577 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS + P+ RFD H+ P+++ E++ +E VN+ I N RIM Sbjct: 578 LREVLGGHVQQKGSLVDPEKTRFDFAHNAPLSADEIRHVEVIVNNEILANAATDARIMPI 637 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A SGA L G KY D VRV+++ S LCGG HV +G+I L I++E+ + Sbjct: 638 EEAQRSGAMMLFGEKYGDEVRVLTIG------SSKELCGGVHVRRSGDIGLFKILAETGV 691 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RR+EA+TG A + + Q L A+ +K V ++ ++ + R L+ A+ Sbjct: 692 AAGVRRVEAVTGDNALALVQQQQALLAEAAAAVKAPVSEVPAKLAQVLDNVRSLEKELAR 751 Query: 777 RKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L +DL ++ ++ ++ D L+S +D L+ K++S ++L + Sbjct: 752 LKARLASAQGDDLLAQAVEVKGARVLAAVMDGADVNALRSTIDKLRDKLKSAAVVLAS-T 810 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + K +++ VT DL + A +L + A+ + GG GGGRP MAQ+GG + A+A Sbjct: 811 ADGKVTLIAGVTGDLTGKVKAGELVNMVARQV-GGKGGGRPDMAQAGGSDAANLPAALAS 869 Query: 892 VASFLKK 898 V +++++ Sbjct: 870 VRAWVEQ 876 >gi|114566020|ref|YP_753174.1| alanyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318869|sp|Q0AZQ1|SYA_SYNWW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|114336955|gb|ABI67803.1| alanyl-tRNA synthetase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 880 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/909 (41%), Positives = 547/909 (60%), Gaps = 43/909 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + + IR TFLE+F++ GH ++ SSSL+P NDPTL+FTN+GM FK++F G +K Y Sbjct: 1 MWSSAEIRKTFLEYFEERGHSVVESSSLVPVNDPTLLFTNAGMNQFKDVFLGLDKRKYVR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLD VGRT RHHTFFEMLGNFSFG YFK AI AW+ LT+ L Sbjct: 61 ATSSQKCVRAGGKHNDLDTVGRTPRHHTFFEMLGNFSFGDYFKREAIGYAWEFLTEVVGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++T+Y +D+EA LW +ISG+ +I+R+ DNFWSM +TGPCGPCSEI +D+G Sbjct: 121 PEEKLWVTIYQDDDEAADLWPEISGIDPGRIVRLGEKDNFWSMGDTGPCGPCSEILYDRG 180 Query: 181 ECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P + +R++EIWNLVFMQF + E LP+ SIDTGMGLER++++L Sbjct: 181 IEYSCGAPDCGIGVCDCDRWLEIWNLVFMQFNRDESGEMTPLPRPSIDTGMGLERLSSIL 240 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 Q +N+D DLF +I+ E++TG YE G RVI DH R+ SFLIADG+LP+N+G Sbjct: 241 QGVDSNFDTDLFIPIIKRIEELTGKAYEQGERGFPFRVIADHSRACSFLIADGVLPSNDG 300 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + R LG + + +C M AYPEL++ + I+E +R E+E Sbjct: 301 RGYVLRRILRRALRFGRFLGIEGSFLYKNVDVVCDIMQEAYPELLEKQDFIKEVIRLEEE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF TL+ GL + ++ + D ++ G+ AF LYDT+G PLD+ +D + +D Sbjct: 361 RFLLTLNDGLKKAEEIMERARQRGDNVIPGEEAFMLYDTYGFPLDLTED-MAEENQFTLD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F++++EEQR RAR + G E++ + F GY+ R Sbjct: 420 KAGFDRSMEEQRQRARQANKGEDLLGQERLLSEKLAGIAPSSFTGYENSRD--------- 470 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S++ AI++ E++++A++G++V ++ +TPFYAE+GGQ+ D G Sbjct: 471 --------------ESVLLAIIKGSELMDKALNGEEVILITARTPFYAESGGQVADCGII 516 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G L++ DV KK +H+ IVE G+L T + L +D R + NH+ATHLLH Sbjct: 517 KGQEGLLRVQDV-KKLSAWILHYGIVE-GVLTTGEGVSLQLDDPARMDTARNHTATHLLH 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG H Q GS + P LRFD +H K ++S EL IE VN+ I + PV T + Sbjct: 575 RALREVLGEHAQQKGSLVEPARLRFDFSHLKALSSEELSRIEQMVNEAIWKLYPVTTTVT 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 A GA AL G KY + VRVV V+ +SS LCGGTHV +TG+I L I E Sbjct: 635 ALGQAREMGAMALFGEKYGEEVRVVQVD-----TYSSELCGGTHVQNTGQIGLFKITGEG 689 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQL 772 SI +G+RRIEAITG A ++ +++LK AS L+ S + R+E + ++ ++ Sbjct: 690 SIGSGLRRIEAITGSYALEYIKQLEDELKKAASALRSSPLELAKRIENLNNSLKEKDKEI 749 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVG 829 + ++L + D +K +N +I EVD ++ L+ + L+ K+ I+ML Sbjct: 750 ENLLQRLSRSSSDELVNKAFQLNDAWILIEEVDIEDPGSLRQNAEMLKDKLGRAIVMLAS 809 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I K +K S + V++DLL++ +A + GGGGGGRP MAQ+GG + +K +A+ Sbjct: 810 I-KGEKVSFVCFVSKDLLEQGLHAGKIVAAAAQVAGGGGGGRPDMAQAGGRDKSKISEAL 868 Query: 890 AGVASFLKK 898 A +KK Sbjct: 869 AEARKMVKK 877 >gi|332041455|gb|EGI77817.1| alanyl-tRNA synthetase [Hylemonella gracilis ATCC 19624] Length = 888 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/919 (40%), Positives = 528/919 (57%), Gaps = 73/919 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +V+ IR TFL+FF GH ++ SS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 7 SVADIRKTFLDFFASKGHTVVASSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRSYVRAA 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK+ ++ AW+LLT + L Sbjct: 67 SVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKKESLNWAWELLTTVYKLPA 126 Query: 123 RRLYITVYDEDEEAFKLWKKI---SGLSAD------KIIRITTN-------DNFWSMAET 166 +LY TVY ED+EA+ +W+ I +G + + +IIRI N DNFW MA+T Sbjct: 127 DKLYATVYLEDDEAYGIWEDIFVKAGWTPERIRQENRIIRIGDNKGGRYKSDNFWMMADT 186 Query: 167 GPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 GPCGPCSEIF+D G I GG PGS E+G+R+IEIWN VFMQFE LP +D Sbjct: 187 GPCGPCSEIFYDHGPHIAGGPPGSPDEDGDRFIEIWNNVFMQFEMHEDGTVTPLPAPCVD 246 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285 TGMGLER+A +LQ +NY+IDLF LI+A+ + G + N + RVI DH+R+++FL Sbjct: 247 TGMGLERLAAILQHVHSNYEIDLFDALIKAAAREVGTQDLSNPSL--RVIADHIRATAFL 304 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ++DG++P+NEGRGYV RRI+RRA+ + LG P L+ L MG AYP L + + Sbjct: 305 VSDGVIPSNEGRGYVQRRIVRRAIRHGYKLGRKTPFFHKLVGELVRLMGDAYPRLKEQQQ 364 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 I E L++E+ERF +TL G+ +LD L G ++L GDVAFKL+DT+G PLD+ D+ Sbjct: 365 RITEVLKAEEERFYETLANGMEILDAALG--GGAKVLPGDVAFKLHDTYGFPLDLTNDVC 422 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG+ +D F A+++Q+++ARA G +K +L F+GY+ L Sbjct: 423 RERGVT-VDEAGFKSAMDKQKNQARA----AGKFKMDK---ALDYTGAGNVFVGYEKLE- 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++ + A+ G + SGQ VV D TPFYAE+G Sbjct: 474 ----------------------AAAKIVALYVDGTPTAQLKSGQDGVVVLDTTPFYAESG 511 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + R ++ D QK + HH + G L ++ ++ R Sbjct: 512 GQVGDEGLIVAGPARFEVADTQKIKADVHGHHGTLAAGTLNVGDTVTAQVNLSRRAATMR 571 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHS THL+H AL +LG+HV Q GS + D RFD TH+ P+T A++ IE VN+ I Sbjct: 572 NHSVTHLMHKALHEVLGAHVQQKGSLVDADKTRFDFTHNAPVTPAQIAEIERRVNEEILA 631 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N R+++ E A A+GA L G KY D VRV+ + S CGGTHV TG+I Sbjct: 632 NSATQARVLDIEAAKATGAVMLFGEKYGDTVRVLDIGT------SREFCGGTHVPRTGDI 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L IV ES + AGIRR+EA+TG A +L + + A LK + GR+ ++ + Sbjct: 686 GLFKIVGESGVAAGIRRVEAVTGANALGYLQTLESTVHQAAGALKAPAAELQGRITQVLD 745 Query: 766 EYRKL--QLIHAKRKLQLNVEDLSCHKIADVN--------FMSHIISEVDSKELKSVMDA 815 + + L ++ K KL + D + +V ++ + D+K L+ +D Sbjct: 746 QVKALEKEIAALKGKLASSQGDELMAQAVEVKGRDGVALRVLAATLQGADAKVLRETLDK 805 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 L+ K+++ I+L + + K + VT D + + A +L A+ + GG GGG+P MA Sbjct: 806 LKDKLKTAAIVLATV-EGGKVQIAAGVTADSVGKIKAGELVNFVAQQV-GGKGGGKPDMA 863 Query: 876 QSGGPNGN---KADQAIAG 891 +GG + + KA QA+ G Sbjct: 864 MAGGTDASGLPKALQAVQG 882 >gi|253999899|ref|YP_003051962.1| alanyl-tRNA synthetase [Methylovorus sp. SIP3-4] gi|253986578|gb|ACT51435.1| alanyl-tRNA synthetase [Methylovorus sp. SIP3-4] Length = 874 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/907 (41%), Positives = 532/907 (58%), Gaps = 58/907 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y + QK Sbjct: 6 IRQQFLDFFASKGHQVVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRAASSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ + L + +L Sbjct: 66 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVYKLPKEKLL 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179 +TVY ED+EA+ +W K G+ ADK+IRI N DNFW M +TGPCGPC+EIF+D Sbjct: 126 VTVYAEDDEAYDIWTKEMGVPADKVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFYDH 185 Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G I GG PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLER++ VLQ Sbjct: 186 GAHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERISAVLQ 245 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NY+IDLF+ LI+A+ + T K + +V+ DH+R+ SFLIADG++P NEGRG Sbjct: 246 GVHANYEIDLFQALIKAAARET--KTTDLESPSLKVLADHIRACSFLIADGVIPGNEGRG 303 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LG L+P L EMG AYPEL+ K + +TL+ E++RF Sbjct: 304 YVLRRIIRRAIRHGYKLGVRAAFFYKLVPDLVIEMGEAYPELVSNKTRVMDTLKQEEDRF 363 Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T++ G+ +L+ L+ + + NG+ AFKL+DT+G PLD+ D+ R + +D Sbjct: 364 FETIENGMAILETELADIAAKGGKTFNGETAFKLHDTYGFPLDLTADVCRERDVT-VDAA 422 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 +F+ A+ Q+ +ARA K+ +L+ ATQF GY+ L Sbjct: 423 AFDAAMARQKDQARA-------AGKFKMSANLEYDGAATQFHGYEKLES----------- 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAI 535 ++V A+ + G V+ G+ VV D TPFYAE+GGQ+GD+G Sbjct: 465 ------------DALVLALYKDGAAVDSLSEGEVGVVVLDNTPFYAESGGQVGDSGELRA 512 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 DGI + D QK +F HH +V G + SL ++ + R NHSATHL+H Sbjct: 513 SDGI-FSVEDTQKVQASVFGHHGVVTTGKISKGDSLKARVNTRARAATMRNHSATHLMHK 571 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + + RFD H+ P+T E++ +E VN I N R+M Sbjct: 572 ALREVLGGHVQQKGSLVDSEKTRFDFVHTAPLTDDEIRQVEALVNAEILANEATQARVMG 631 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 EDA +GA L G KY D VRV+ + S LCGGTHVS TG+I L I ES Sbjct: 632 IEDAQKTGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVSRTGDIGLFKITGESG 685 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + AG+RR+EA TG+ A + Q L +A+ LK V ++ ++ + + L +L Sbjct: 686 VAAGVRRVEATTGENALKLMQQQQALLGQIAAELKAPASEVPAKLGQLMDNVKTLEKELA 745 Query: 774 HAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL + D ++ D + ++ + D+ L+ MD L+ K++S I+L Sbjct: 746 RLKSKLASSQGDDLVNQAVDLGGIKVLAATLDGADANTLRETMDKLKDKLKSAAIVLAS- 804 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + K S+ VT DL+ + A +L A + GG GGG+P MA +GG + ++ QA++ Sbjct: 805 ANDGKVSLAAGVTPDLIAKLKAGELVNFVAGQV-GGKGGGKPDMAMAGGTDASQLPQALS 863 Query: 891 GVASFLK 897 V ++K Sbjct: 864 SVEGWVK 870 >gi|220903571|ref|YP_002478883.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867870|gb|ACL48205.1| alanyl-tRNA synthetase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 892 Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/917 (41%), Positives = 532/917 (58%), Gaps = 44/917 (4%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +L+FF ++ HE++ S +IP NDP+L+F NSGMV FK +F G+EK Y Sbjct: 1 MLTAKEIRRRYLDFFHRHQHEIVASGPIIPPNDPSLLFANSGMVQFKKLFLGEEKRSYSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+R GKHNDL+NVGRT RHHTFFEMLGNF+FG YFK AI AWD +TKE +L Sbjct: 61 ATTCQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFAFGDYFKREAITWAWDFVTKELEL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TV+ ED+EA LW +I+GL A++I+R+ DNFW+M +TGPCGPCSEI+ DQG Sbjct: 121 PKEKLWVTVFREDDEAAVLWAEIAGLPAERIVRMGEKDNFWTMGDTGPCGPCSEIYVDQG 180 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 C P G+ + +R++EIWNLVF QF+Q R +L + +IDTGMGLERMA V Sbjct: 181 ADMSCGPDCGIGNC-DCDRFLEIWNLVFTQFDQSADGTRTLLARPNIDTGMGLERMAAVA 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNI-VNHRVIVDHLRSSSFLIADGIL 291 Q K +N+D DLF+ +IQ + + G+ Y + N++ RVI DH R+++FL+A G+L Sbjct: 240 QGKRSNFDCDLFQDIIQYAAGLAGVTYSFSAPDTNDVDTALRVIADHSRAAAFLVAGGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRR++RRA+ +A L+G EP M + + MG AYPEL+++ I+ + Sbjct: 300 PSNENRGYVLRRLIRRALRFATLMGVHEPFMHKVARKVTEVMGDAYPELVESADFIDRAV 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARG 409 E++RF TL +GL LL+ L+ L I + GD FKLYDT+G PLDI+ D+ RG Sbjct: 360 FEEEQRFSLTLKKGLDLLEEELAALKARGITLIPGDFCFKLYDTYGFPLDIVTDVAEKRG 419 Query: 410 LAGIDIISFNQALEEQRSRARAHSLG---LGSGTTEKIWF-SLKEKYGATQFIGYDLLRG 465 D F + ++EQR RAR H LG G + F SL + ++F+GY+ L Sbjct: 420 FHA-DAEGFEKYMQEQRKRARDHQKKGGLLGQGEDGQSPFKSLADGGAESRFVGYEGL-- 476 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 Q P V+ ++ A Q +++ E SG V + TPFY E G Sbjct: 477 ----------TAQSP-------VTILLDAAGQPVDVLGEGESGYAVT---EATPFYGEGG 516 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ GDTG ++ K A + VH V RG + + L +D R+ + Sbjct: 517 GQAGDTGLMSATSGEARVLTTHKPAPQLLVHEIEVVRGEILQGKEVRLAVDPDERKATAR 576 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ THLLH AL +LG HV Q GS + LRFD +H +T EL ++E VN I Sbjct: 577 NHTCTHLLHAALRRVLGPHVKQAGSLVDGRRLRFDFSHIAALTPEELAAVERQVNAAILA 636 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-YEDGGVHSSALCGGTHVSSTGE 704 +L V R M DA+A+GA AL KY VRV++V E S LCGGTH++ TGE Sbjct: 637 DLEVSAREMPMADAVAAGAIALFNEKYGSTVRVLTVAGAEMCDPESVELCGGTHLARTGE 696 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 +IVSES + AG+RRIEA+TG A H + Q +L SLA+ LK G + RV+ + Sbjct: 697 AGAFFIVSESGVAAGMRRIEAVTGWNAYGHAVEQRAELGSLAALLKSKPGQLAERVQTLH 756 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQ 821 E +KL+ K + +VN + + + +D+ K L+ VMD ++ ++ Sbjct: 757 GEVKKLRKASEKAAAAPASGAELVARAVEVNGVRLLAARLDNVPVKALREVMDDVRSRLS 816 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + + +E K +L+ V++DL RF A L + A GG GGGRP MAQ+GG Sbjct: 817 ENAVACLATVEEGKVGMLVYVSKDLHGRFTAPALIKTVAAPC-GGSGGGRPDMAQAGGNQ 875 Query: 882 GNKADQAIAGVASFLKK 898 +A A + +++ Sbjct: 876 PEGLAEAFAALKKCIEQ 892 >gi|150021161|ref|YP_001306515.1| alanyl-tRNA synthetase [Thermosipho melanesiensis BI429] gi|205830274|sp|A6LMH9|SYA_THEM4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149793682|gb|ABR31130.1| alanyl-tRNA synthetase [Thermosipho melanesiensis BI429] Length = 859 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/914 (39%), Positives = 552/914 (60%), Gaps = 79/914 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 IR FLEFF+K GH++LPS+SLIP +DP LMFT +GMVPFK IF G+ PVY VTT Sbjct: 4 EEIRQLFLEFFEKKGHKILPSASLIP-DDPQLMFTVAGMVPFKPIFWGKVDPVYPRVTTC 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R D++NVGRT RHHTFFEMLGNFSFG YFK AI+ AW+ +T+ + + R Sbjct: 63 QKCIRT----TDIENVGRTPRHHTFFEMLGNFSFGDYFKREAIEWAWEFVTQVLKIPEER 118 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECI 183 L+I+VY+EDEEA+ +W+KI G+S++KI+++ DNFW A TGPCGP +EIF+D G+ + Sbjct: 119 LWISVYEEDEEAYDIWRKI-GVSSNKIVKLGKEDNFWGPAGPTGPCGPDTEIFYDTGKEV 177 Query: 184 P---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P G P R++EIWNLVF ++ Q + L + +IDTG GLER+A ++Q Sbjct: 178 PITDGKEPNPGNTEGRFVEIWNLVFTEYYQDENGQLLPLKRKNIDTGAGLERIAAMMQGV 237 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N+D DLF +I V ++Y + + V+ RVI DH+R+ FLI+DG+ P+NEGRG Sbjct: 238 YYNFDTDLFLPIINRITDVLNVEYGRDEKHDVSIRVIADHIRALVFLISDGVFPSNEGRG 297 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA + ++LG +P + +++ A+ +MG YPE+++ + ++E + E+ERF Sbjct: 298 YILRRILRRAARHGKMLGSEKPFLHNIVDAVVEKMGKIYPEIVEKQSFVKEIIYGEEERF 357 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 + L++GL ++D ++ G ++G+ AFKLYDT+G PLDI++D+ G +D F Sbjct: 358 LQNLNKGLDIVDKIVKETGGK--IDGEAAFKLYDTYGFPLDILRDLANENGYI-LDEEGF 414 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG----ATQFIGYDLL---------RG 465 N+ +E+QR +AR +G E FS + Y +T+F+GYD+L R Sbjct: 415 NKYMEQQRKKARE-----AAGEVE---FSERTDYETLDISTKFVGYDVLSTNARVLKIRT 466 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 KF+ E + V C E++ D+TPFY E G Sbjct: 467 EKFVDEVKDVEC----------------------------------ELILDETPFYPEKG 492 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ D G G +T+V EGI VH + +G +R ++ ++D + R+ + Sbjct: 493 GQVADKGVIKGKNGEFVVTNVYVPVEGIIVHKGKL-KGKIRVGDAIFASVDEKKRKATAR 551 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG+HV Q GS + P+ LRFD TH +T E++ IE VN+ I + Sbjct: 552 NHTATHLLHAALRKVLGTHVRQAGSLVAPERLRFDFTHYAALTKEEIEKIEKMVNEKILE 611 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T++M+ ++AI +GA AL KY D+VRVV + S LCGGTHV +TGEI Sbjct: 612 AIDVNTKVMSYDEAIKNGAMALFEEKYGDKVRVVRIR-----DFSEELCGGTHVKNTGEI 666 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L I+SESS+ AG+RRIEAITG + ++L + K + L + NV ++E++ E Sbjct: 667 GLFKIISESSVSAGVRRIEAITGFASLTYLENLETNWKKIKEELDATDENVFVKIEKLKE 726 Query: 766 EYRKLQL-IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 ++L+L I +K +N++ + + + N + +++ E + E ++ D K I G+ Sbjct: 727 GIKQLELKIKEIQKNMINIKQI-LNNVQIENEIKYLVYEFEGVEQNTLRDLADKLIDRGV 785 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++V +K+ +LIV + ++ +A ++A+ +K+L GGGGGRP AQ+GG + +K Sbjct: 786 DLVVFFNKQGDKVILIVKRKKTFEKLHAGNIAKSLSKIL-DGGGGGRPDFAQAGGKDVSK 844 Query: 885 ADQAIAGVASFLKK 898 ++A + + L++ Sbjct: 845 INEAKSKLIEILRE 858 >gi|254470073|ref|ZP_05083477.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062] gi|211960384|gb|EEA95580.1| alanyl-tRNA synthetase [Pseudovibrio sp. JE062] Length = 551 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/566 (55%), Positives = 403/566 (71%), Gaps = 26/566 (4%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTN+GMVPFKN+FTG EK Y T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNF Sbjct: 1 MFTNAGMVPFKNVFTGLEKRDYVRATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNF 60 Query: 97 SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156 SFG YFKE AI+LAW+L+TKE+ L +L +TVY ED+EAF +WKK++G + +KIIRI T Sbjct: 61 SFGDYFKENAIELAWNLITKEYGLPADKLLVTVYSEDDEAFNIWKKLTGFADEKIIRIPT 120 Query: 157 NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQE 215 +DNFW+M +TGPCGPCSEIF+D GE I GG PGS EE G+R+IEIWNLVFMQ+EQ + Sbjct: 121 SDNFWAMGDTGPCGPCSEIFYDHGEQIWGGPPGSPEEDGDRFIEIWNLVFMQYEQL-ADK 179 Query: 216 RFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVI 275 R LP+ SIDTGMGLER A ++Q NNY+IDLFK LI +SE +TG++ G +HRVI Sbjct: 180 RIDLPRPSIDTGMGLERFAAIMQGVHNNYEIDLFKALIASSEHLTGVEAAGKAQASHRVI 239 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS 335 DHLRS +FLIADG+LP+NEGRGYVLRRIMRRAM +A LLG EP++ +LP L EMG Sbjct: 240 ADHLRSMAFLIADGVLPSNEGRGYVLRRIMRRAMRHANLLGAKEPVIFKMLPTLVREMGQ 299 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PEL +A+ LIEET++ E++RF KTL+RGL LL+ S LG + L+G+ AFKLYDT+G Sbjct: 300 AFPELPRAEKLIEETIQLEEKRFIKTLERGLGLLEDATSSLGSGDQLDGETAFKLYDTYG 359 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 PLD+ QD L R +A +D FN A+E QR+ ARA G G T+ IWFS+KE+ GAT Sbjct: 360 FPLDLTQDALRNREIA-VDTDGFNTAMERQRAEARAAWAGSGDAATDAIWFSIKEQAGAT 418 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 +F+GY+ T +V ++V+ GE V+ G++ ++ Sbjct: 419 EFLGYE-----------------------TEKAEGVVLSLVKDGEEVKVLKQGEEGSLIL 455 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +QTPFY E+GGQ+GD G + DG+ + +T+ QKKA+G+FVH VE G + + +L L + Sbjct: 456 NQTPFYGESGGQVGDCGTMVADGVSITVTNTQKKADGLFVHSVRVESGDVNVDDALELIV 515 Query: 576 DYQNRRQLSINHSATHLLHHALSTIL 601 D+ R + NHSATHL+H + L Sbjct: 516 DHARRSAIRSNHSATHLVHERFAKCL 541 >gi|313201870|ref|YP_004040528.1| alanyl-tRNA synthetase [Methylovorus sp. MP688] gi|312441186|gb|ADQ85292.1| alanyl-tRNA synthetase [Methylovorus sp. MP688] Length = 874 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/907 (41%), Positives = 533/907 (58%), Gaps = 58/907 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF GH+++ SSSL+P DPTL+FTN+GM FK++F G +K Y + QK Sbjct: 6 IRQQFLDFFASKGHQVVASSSLVPHGDPTLLFTNAGMNQFKDVFLGFDKRPYTRAASSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ + L + +L Sbjct: 66 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWELLTEVYKLPKEKLL 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179 +TVY ED+EA+ +W + G+ ADK+IRI N DNFW M +TGPCGPC+EIF+D Sbjct: 126 VTVYAEDDEAYDIWTREMGVPADKVIRIGDNKGARYASDNFWMMGDTGPCGPCTEIFYDH 185 Query: 180 GECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G I GG PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLER++ VLQ Sbjct: 186 GAHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRDEQGVMHPLPKPSVDTGMGLERISAVLQ 245 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NY+IDLF+ LI+A+ + T K + +V+ DH+R+ SFLIADG++P NEGRG Sbjct: 246 GVHANYEIDLFQALIKAAARET--KTTDLESPSLKVLADHIRACSFLIADGVIPGNEGRG 303 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LG L+P L EMG AYPEL+ + + +TL+ E++RF Sbjct: 304 YVLRRIIRRAIRHGYKLGVRAAFFYKLVPDLVIEMGEAYPELVSNQTRVMDTLKQEEDRF 363 Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T++ G+ +L+ L+ + + NG+ AFKL+DT+G PLD+ D+ R + +D Sbjct: 364 FETIENGMAILETELADIAAKGGKTFNGETAFKLHDTYGFPLDLTADVCRERDVT-VDAA 422 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 +F+ A+ Q+ +ARA K+ +L+ + ATQF GY+ L Sbjct: 423 AFDAAMARQKDQARA-------AGKFKMSANLEYEGAATQFHGYEKLES----------- 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAI 535 ++V A+ + G V+ G+ VV D TPFYAE+GGQ+GD+G Sbjct: 465 ------------DALVLALYKDGAAVDSLSEGEVGVVVLDNTPFYAESGGQVGDSGELRA 512 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 DGI + D QK +F HH +V G + SL ++ + R NHSATHL+H Sbjct: 513 SDGI-FTVEDTQKVQASVFGHHGVVTTGKISKGDSLKARVNTRARAATMRNHSATHLMHK 571 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + + RFD H+ P+T E++ +E VN I N R+M Sbjct: 572 ALREVLGGHVQQKGSLVDSEKTRFDFVHTAPLTDDEIRQVEALVNAEILANEATQARVMG 631 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 EDA +GA L G KY D VRV+ + S LCGGTHVS TG+I L I ES Sbjct: 632 IEDAQKTGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVSRTGDIGLFKITGESG 685 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + AG+RR+EA TG+ A + Q L +A+ LK V ++ ++ + + L +L Sbjct: 686 VAAGVRRVEATTGENALKLMQQQQALLGQIAAELKAPASEVPAKLGQLMDNVKTLEKELA 745 Query: 774 HAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL + D ++ D + ++ + D+ L+ MD L+ K++S I+L Sbjct: 746 RLKSKLASSQGDDLVNQAVDLGGIKVLAATLEGADANTLRETMDKLKDKLKSAAIVLAS- 804 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + K S+ VT DL+ + A +L A + GG GGG+P MA +GG + ++ QA++ Sbjct: 805 ANDGKVSLAAGVTPDLIAKLKAGELVNFVAGQV-GGKGGGKPDMAMAGGTDASQLPQALS 863 Query: 891 GVASFLK 897 V ++K Sbjct: 864 SVEGWVK 870 >gi|309389100|gb|ADO76980.1| alanyl-tRNA synthetase [Halanaerobium praevalens DSM 2228] Length = 877 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 370/912 (40%), Positives = 549/912 (60%), Gaps = 64/912 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +L+FF+ GH +L S+ LIP +DPTL++ N+GM PFK F G +P ++T QK Sbjct: 8 IRQAYLDFFESKGHLILDSAPLIPKDDPTLLWINAGMAPFKPYFNGSLEPPKTRISTSQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVG+T RHHT+FEMLGNFSFG YFKE AI AW+ +T+ +L++ RL+ Sbjct: 68 CIRT----NDIENVGKTARHHTYFEMLGNFSFGDYFKEEAISWAWEFVTEVLELEEDRLW 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ 180 IT+Y+EDEEAF +W GL ++I+R+ +NFW + TGPCGPCSEI +D+G Sbjct: 124 ITIYEEDEEAFAIWHDKVGLDEERIVRMGKKENFWQIG-TGPCGPCSEIHYDRGPEAGES 182 Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG EG+RY+EIWNLVF Q+ E LP +IDTGMGLER+A++LQ Sbjct: 183 EEDVLGG------EGDRYLEIWNLVFTQYNYTEAGEYQELPNKNIDTGMGLERVASILQA 236 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N++ DL K LI +++G+ Y+ + ++ ++RVI DH+RS+S I+DG LP+NEGR Sbjct: 237 TETNFETDLIKPLIDQVVEMSGIDYQKDEQSLTSYRVIADHIRSASVAISDGALPSNEGR 296 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA Y R LG+ EP + L+ + + P+L + ++ ++SE++ Sbjct: 297 GYVIRRLIRRAARYGRKLGFKEPFLYQLVEKTAEIVAAVAPDLKKQLAHVKNVIKSEEKS 356 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL++GL +L+ +L++L + E+++G AF+LYDT+G PLD+ +DI G+ +D Sbjct: 357 FLQTLEQGLNILEDILNNLKAENKEVISGQDAFRLYDTYGFPLDLTEDIAAEEGIK-VDQ 415 Query: 416 ISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + +E QR RAR +G EKI+ +++ A F GY L+ Sbjct: 416 KGFEKEMEAQRKRAREARAETSFNNGEIEKIYAEYQDQIEARNFTGYHSLQAKA------ 469 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + +VKA Q + +G K E++ +TPFYAE+GGQLGD G Sbjct: 470 -------------QIVGLVKAEKAQKSL----KAGDKAEIILTKTPFYAESGGQLGDKGV 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHL 592 D ++ D KKAE +FVH V++G + + + Y NRR+ + +HSATHL Sbjct: 513 IKNDQFEAEVKDTVKKAE-VFVHQVEVKKGKIEVGEEVTAVV-YHNRREATARHHSATHL 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q+GS + PD LRFD TH ++S EL+ +E VN I +N PV T Sbjct: 571 LHKALKEVLGEHVNQSGSLVAPDRLRFDFTHFSALSSQELEELERKVNKAIRENYPVETE 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 I ++A GA AL G KY VRVV + G S LCGGTHV +TG+I I++ Sbjct: 631 IKAIDEAKDMGATALFGEKYGQEVRVVKM-----GDFSLELCGGTHVRATGDIGAFKIIN 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG+RRIEA+TG+ A + + E L LA+ LK N++ RV+++ +E ++L+ Sbjct: 686 ESGIAAGVRRIEAVTGEYALDYFNSKLELLNQLAAELKTDPNNLLQRVKQVKKEQKELEK 745 Query: 773 IHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K +L +DL ++A +N ++ + ++D+ L+++ D L+ KI SGII+L Sbjct: 746 ELETMKEKLAGSKKDDLIDQLEEVAGINLLTAELEDLDNSALRNLTDQLKDKIDSGIIVL 805 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 E K + V+EDL+ + F A ++ AK+ GGGGGGRP MAQ+GG Sbjct: 806 AS-KGENKVIFVASVSEDLIAKGFKAGNIIAQVAKI-AGGGGGGRPDMAQAGGSKPENTS 863 Query: 887 QAIAGVASFLKK 898 A+A V + +K+ Sbjct: 864 AALAEVKNIIKE 875 >gi|251798323|ref|YP_003013054.1| alanyl-tRNA synthetase [Paenibacillus sp. JDR-2] gi|247545949|gb|ACT02968.1| alanyl-tRNA synthetase [Paenibacillus sp. JDR-2] Length = 877 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 364/907 (40%), Positives = 534/907 (58%), Gaps = 69/907 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ +L FF+ H + PS+SL+P NDP+L++ N+GM P K F G+ P +T Sbjct: 4 SEIRSKWLSFFESKRHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVIPDNPRITNS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEF-DLDQ 122 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT KE+ D Sbjct: 64 QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTSKEWIGFDP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 RL +TVY EDEEA+K W + GL A++I ++ ++NFW + E GPCGPC+EIF+D+GE Sbjct: 120 DRLSVTVYPEDEEAYKYWNEKIGLPAERIYKL--DENFWDIGE-GPCGPCTEIFYDRGEK 176 Query: 182 --------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 C PGG E ER++E+WNLVF QF LP +IDTG GLER Sbjct: 177 YGDLNDPECWPGG------ENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERF 230 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGIL 291 A++LQ+ +N+D DLF +I+ + ++ +KY N+ V +VI DH+R+ +F + DG++ Sbjct: 231 ASILQDVDSNFDTDLFIPIIERTCEIASVKYHVNDEHDVALKVIADHIRTVAFAVGDGVM 290 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGY++RR++RRA+ Y + +G P + L + MG YPE++ + IE + Sbjct: 291 PSNEGRGYIIRRLLRRAVRYGKTIGIDRPFLYELTSVVGEVMGVYYPEVVDKREFIERVI 350 Query: 352 RSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 R+E+ERF +TL GLV+L +++ G EI G+ AF+LYDT+G P D+ +D Sbjct: 351 RTEEERFHETLSDGLVMLSDLVATARKAGTTEI-GGEDAFRLYDTYGFPFDLTEDFASEN 409 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F+ A+E QR RARA G + L + ++F+GY+ L Sbjct: 410 GMT-VDREGFDAAMEAQRERARAARQDTGGMNVQG--GPLADFTVKSEFVGYNELV---- 462 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + AIV + +V+ G +V V+ D+TPFYAE+GGQ+ Sbjct: 463 -------------------TEAQITAIVHEDSLVDLVGEGSRVLVLLDRTPFYAESGGQI 503 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G +G+G LQ+ DV K G VHHA+V G +RT ++ + R + NH+ Sbjct: 504 GDKGTIVGNGFTLQVEDVTKAPHGQSVHHAVVASGTVRTGETVEAVVIRSVREDVIKNHT 563 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + D LRFD +H IT EL IE VN+ I P Sbjct: 564 ATHLLHKALKEVLGDHVNQAGSLVQADRLRFDFSHFGSITPEELTEIERKVNEQIWIGTP 623 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV +A A GA AL G KY D VRVV V G +S LCGG HV++T +I + Sbjct: 624 VVIESKQIAEAKAMGAMALFGEKYGDIVRVVQV-----GNYSIELCGGCHVANTSQIGMF 678 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 +VSES I +G+RRIEA+TG+ A S++ GQ + LK ++ LK + +V R+E ++ + + Sbjct: 679 KLVSESGIGSGVRRIEAVTGRHAYSYMEGQLDLLKQASALLKANNNDVPKRIEALFAQVK 738 Query: 769 KL----QLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L + + AK +++ + + + DV +S +S L+ + D L+ K+ S Sbjct: 739 ELGRENESLQAKLSRIEAGSLEQNAKTVGDVTVLSAKVSAPTMDALRGIADELKAKLPSA 798 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L G +E K S++ V+ DL+ + F+A + + +A GG GGGRP MAQ+GG + Sbjct: 799 VIIL-GAVQEDKVSLVAAVSADLVKKGFHAGKIVKEAAAHC-GGSGGGRPDMAQAGGKDA 856 Query: 883 NKADQAI 889 +K D+A+ Sbjct: 857 SKLDEAL 863 >gi|253574903|ref|ZP_04852243.1| alanyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845949|gb|EES73957.1| alanyl-tRNA synthetase [Paenibacillus sp. oral taxon 786 str. D14] Length = 874 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 370/913 (40%), Positives = 532/913 (58%), Gaps = 67/913 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ +LEFF GH++ PS+SL+P NDP+L++ N+GM P K F G+ KP + Sbjct: 4 SEIRSKWLEFFASKGHKIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRIKPENPRLANS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D Sbjct: 64 QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEAITWAWEFLTDKKWIGFDP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 RL +TVY EDEEAFKLW + G+ AD+II++ DNFW + E GPCGPC+EIF+D+GE Sbjct: 120 DRLSVTVYPEDEEAFKLWNEKIGIPADRIIKL--EDNFWDIGE-GPCGPCTEIFYDRGEA 176 Query: 182 --------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 C PGG E ER++E+WNLVF QF LP +IDTG GLER Sbjct: 177 YGDLSDPECYPGG------ENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERF 230 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGIL 291 A++LQ+ +N+D DLF+ +IQ + + G+ Y ++ V +VI DH+R+ +F +ADG+L Sbjct: 231 ASILQDVNSNFDTDLFQPIIQKTASLAGVTYGAAEDSDVALKVIADHIRTVTFAVADGVL 290 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYV+RR++RRA+ Y +L+G +P M L+ + MG+ YP+++ + IE+ + Sbjct: 291 PSNEGRGYVIRRLLRRAVRYGKLIGLDKPFMFSLVETVGDIMGTYYPDVVIKREFIEKVI 350 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 R+E+ERF +TL GL +L + + G+ +I +GD AFKLYDT+G PLD+ +D Sbjct: 351 RTEEERFHETLSDGLAILADISAEAKAQGRTQI-SGDDAFKLYDTYGFPLDLTEDFAAEH 409 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL+ +D F A+EEQR RARA GS + L + T+F+GY+ L Sbjct: 410 GLS-VDREGFEAAMEEQRERARAARHESGSMMVQG--GVLADFTTKTEFVGYNELE---- 462 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V++ + AIV V+ GQ +V+ TPFYAE+GGQ+ Sbjct: 463 -------------------VTTSIVAIVVDDAFVDTLGEGQSGQVILASTPFYAESGGQV 503 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G D + + K G VH V+ G LR + ++D + R NH+ Sbjct: 504 SDQGTIHNDSASATVEGLFKAPHGQHVHQVTVKTGELRVGAEVTASVDREQRSHTVKNHT 563 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL LG HV+Q GS + P LRFD +H I+ EL IE VN+ I LP Sbjct: 564 ATHLLHKALKETLGEHVNQAGSLVEPQRLRFDFSHLGSISPEELAEIERRVNEQIWNALP 623 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + ++A A GA AL G KY D VRVV V G +S LCGG HV+++ EI L Sbjct: 624 VTTSLKPIDEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVNNSAEIGLF 678 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I +G+RRIEA+TG+ A + GQ + LK A LK + +V RVE ++++ + Sbjct: 679 KIVSESGIGSGVRRIEAVTGRGAYLFMDGQLDLLKQAAGLLKANVNDVPKRVEGLFQQLK 738 Query: 769 KLQLIHAKRKLQLNV---EDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L + + +L+V +L+ + ++ + L+++ D L+ K+ Sbjct: 739 ELSRENESLQSKLSVIEAGELTSQVVSVGQTKLLAARVQAGSMDALRTLADELKVKLPDA 798 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +++L +++K V++V E++ +A L + A V GGGGGGRP MAQ+GG + + Sbjct: 799 VLVLGAPNEDKVNFVVVVPKEEVARGLHAGKLVKEIAAVC-GGGGGGRPDMAQAGGKDAS 857 Query: 884 KADQAIAGVASFL 896 K D+A+ A ++ Sbjct: 858 KLDEALKVAAEWI 870 >gi|323702194|ref|ZP_08113861.1| alanyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574] gi|323532881|gb|EGB22753.1| alanyl-tRNA synthetase [Desulfotomaculum nigrificans DSM 574] Length = 877 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 378/905 (41%), Positives = 561/905 (61%), Gaps = 51/905 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF++ GH++LPS+SLIP NDP++++T +GMVPFK FTGQ P Y+ VTT QK Sbjct: 6 IREAFLRFFEERGHQILPSASLIPHNDPSILWTAAGMVPFKPFFTGQAVPEYKRVTTCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R D+++VGRT RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L +L+ Sbjct: 66 CIRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKEKAIPWAWEFVTEHLKLPADKLW 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 IT+Y +D+EAF +W + G+ A++I+R+ + NFW + GPCGPCSEI+ D GE G Sbjct: 122 ITIYLDDDEAFDIWHNVVGVPAERIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGETRGCG 180 Query: 187 LP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P G + +R++EIWNLVF+QF + + L IDTGMGLER+A+VLQ+ +N+ Sbjct: 181 SPNCGVGCDCDRFLEIWNLVFIQFFRDEEGNYSPLKNKGIDTGMGLERVASVLQQVNSNF 240 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVLR 302 D DLF+ ++ + + G KY + V+ +VI DH R+ +F + DG LP NEGRGYV+R Sbjct: 241 DTDLFREIMDFTANMVGQKYGQDARVDLALKVIADHCRAVTFAVNDGALPGNEGRGYVIR 300 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RRA+ + R+LG EP + + A+ +M AYP+L Q I +R+E+ERF +TL Sbjct: 301 RLLRRAVRFGRVLGVHEPFLYKVAGAVINQMAIAYPDLKQRTDHILRVIRTEEERFLETL 360 Query: 363 DRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 G +L ++S GK EI +G AF+LYDT G PL++ ++I +GL+ +D F Sbjct: 361 AAGSDILASLISEARAAGKTEI-SGQDAFRLYDTFGFPLELTREIASEQGLS-VDEDGFT 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 A+EEQR RAR+ + + + +L+E+ G T+F+GY L D VL Sbjct: 419 AAMEEQRRRARSARQETEYLSERGVMYKALREELGETRFVGYGTLTA------DANVLAL 472 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 L +G+ I AV+G++VE++ D TP YAE+GGQ+ D G Sbjct: 473 -----LKDGLQEI------------SAVAGEEVEIILDVTPCYAESGGQVADYATLTGPD 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++I V K EG+FVH V G+L+ S+ + +D + R+ + NHSATHLLH AL Sbjct: 516 LEVEIYSVNKPVEGLFVHRGKVVSGVLKRHDSVKVEVDARRRQDTARNHSATHLLHKALK 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + PD LRFD TH +T ELK +E+ VN + NL V + Sbjct: 576 QVLGDHVNQAGSLVEPDRLRFDFTHYAALTPEELKQVEELVNQAVLANLSVDVFETSLSK 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GAAAL G KY +VRVV + G S LCGGTH++ T E+ L I++E+S+ A Sbjct: 636 AKAMGAAALFGEKYGKQVRVVKM-----GDFSLELCGGTHLTCTAEVGLFKIINETSVGA 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHAKR 777 G+RRIEA+TG +L ++E+L+ +A+ +K + +V RVE + ++ + L Q I A R Sbjct: 691 GLRRIEAVTGPGVLRYLAAKEEQLQEIAAVIKSPEHELVRRVEALVQQNKSLEQEIEALR 750 Query: 778 -KL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 KL + V+D+ ++ V ++ +++ D L+S++D L+ K+ SG+I+L G Sbjct: 751 GKLARAEVQDILGQVQEVKGVPVLAAVVAAPDMDNLRSMVDMLRDKLGSGVILL-GSKAG 809 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +K +++ VT+DL+ R +A +L + AK++ GGGGGGRP MAQ+GG + +K +AI V Sbjct: 810 EKVNLVAAVTKDLVGRGLHAGNLVKQIAKMV-GGGGGGRPDMAQAGGKDPSKLKEAIDQV 868 Query: 893 ASFLK 897 + ++ Sbjct: 869 IAVVE 873 >gi|157273379|gb|ABV27278.1| alanyl-tRNA synthetase [Candidatus Chloracidobacterium thermophilum] Length = 880 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 377/909 (41%), Positives = 534/909 (58%), Gaps = 60/909 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL++F ++GH ++ SS ++P +D TL+FTN+GM FK++FTG+E Y + QK Sbjct: 7 IRRRFLDYFARHGHRIVKSSPVLPPDD-TLLFTNAGMNQFKDVFTGRETREYTRAASSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RAGGKHNDLD VG+T RHHTFFEMLGNFSFG YFKE AI AW+LL +EF L RL+ Sbjct: 66 CIRAGGKHNDLDEVGKTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLLREFGLPLERLW 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 TVY++D+EAF LWKK+ G AD+I+R +NFW M ETGPCGPCSEI + G+ + Sbjct: 126 FTVYEDDDEAFALWKKV-GAPADRILRFGKKENFWQMGETGPCGPCSEIHYFLGDDLADN 184 Query: 187 LPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 P + G+ IEIWNLVFMQFE+ LPK S+DTG GLER+A+VLQ K +NYD Sbjct: 185 RPEHVNGPGDTTIEIWNLVFMQFERFADGTLKPLPKPSVDTGAGLERLASVLQGKKSNYD 244 Query: 246 IDLFKHLIQ--ASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DL +++ A+ Y+ + V+ R+I DH R+++F IADGI P N GR YVLR+ Sbjct: 245 TDLIFPIVEHIAARAGKPYHYDSPDGVSMRIIADHARATAFSIADGIYPGNTGRNYVLRK 304 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPA-LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 IMRRA+ + R LG E L +H + A + M +A+PEL +I + +E++ F TL Sbjct: 305 IMRRAIWHGRRLG-IENLFLHDITAFVVAHMAAAFPELQTQAEVITRVVTTEEKLFSATL 363 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 G L+ + +++G AF LY T+GLPLD++ I RGL +D F AL Sbjct: 364 AAGRKRLEEAFRR-AEHGVVSGADAFDLYQTYGLPLDLIAYIAEQRGLR-VDEAGFEAAL 421 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA--TQFIGYDLLRGSKFMKEDRKVLCQKP 480 E+R RAR G GT + + + + T F GYD L Sbjct: 422 TEERIRARESWKG---GTAKAVAPAYQAALDGRPTIFRGYDHLSLPDLR----------- 467 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 V+A+++QGE+VE +G+ EV+ D+TPFYAEAGGQ+GDTG + + Sbjct: 468 -----------VRALIRQGELVEVLRAGEDGEVILDETPFYAEAGGQVGDTGLLENEAVT 516 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++TD G+ VH V RG +RT + T+D RR+ +NHSATHLLH AL + Sbjct: 517 MRVTDTVAPVTGLIVHCVKVLRGAVRTHDRVTATVDADRRRRTMLNHSATHLLHAALREV 576 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+HV Q GS + PD LRFD TH +++ E+ +E VN I +N P+ R M + AI Sbjct: 577 LGAHVKQAGSEVAPDKLRFDFTHYAALSADEIAEVERLVNAQIRRNAPLAKREMPLDAAI 636 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A+GA AL G KY D VRVV V S LCGGTHV++TG+I L I+SESSI AG+ Sbjct: 637 AAGAIALFGEKYGDVVRVVEVPG-----FSIELCGGTHVTATGDIGLFKIISESSIAAGV 691 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRK 778 RRI A+TG+ A + L +LA+ ++ G V EI + KLQ L A+R+ Sbjct: 692 RRIIAVTGEAAFERFQADEAILSNLAATFRLG-----GEVSEIPAQVEKLQASLRQAERE 746 Query: 779 LQLNVEDLSCHK----------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ L+ + I DV ++ ++E+D ++ + + L K+ +++ V Sbjct: 747 IESLRLKLAQQRAETALAEARTIGDVRVLALEVTELDKSGVRQLAEYLLGKLGQAVVV-V 805 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G+ E+K S+ + V + L +R A L R A ++ GG GGGR A++GG + + +A Sbjct: 806 GLRSEEKVSLAVRVADPLTNRLQANRLVRELAAMV-GGSGGGRADYAEAGGKDPARLPEA 864 Query: 889 IAGVASFLK 897 + + ++ Sbjct: 865 LHATPAIVE 873 >gi|284097293|ref|ZP_06385431.1| alanyl-tRNA synthetase [Candidatus Poribacteria sp. WGA-A3] gi|283831199|gb|EFC35171.1| alanyl-tRNA synthetase [Candidatus Poribacteria sp. WGA-A3] Length = 734 Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust. Identities = 341/760 (44%), Positives = 462/760 (60%), Gaps = 37/760 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N +R +FL+FF H ++PS+SL+P DPTL+FTN+GM FK +F G+E+ Y Sbjct: 4 NAHELRQSFLDFFHAADHAVVPSASLLPQADPTLLFTNAGMNQFKRVFLGEEQRSYSRAV 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ A+ WD LTK L Sbjct: 64 SVQRCMRAGGKHNDLENVGYTRRHHTFFEMLGNFSFGDYFKKDAVHYGWDYLTKTLGLPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L++TV+ +D+EAF+LW+ G+ A +I+R+ DNFW M ETGPCGPCSEI DQG Sbjct: 124 DQLWVTVFQDDDEAFELWENSVGVPAARIVRLGYKDNFWQMGETGPCGPCSEIHIDQGAA 183 Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + G + + +RY+EIWNLVFMQF++ + LPK SIDTGMGLER+A V+Q Sbjct: 184 LGCGRASCAVGCDCDRYLEIWNLVFMQFDRDAEGNLHPLPKPSIDTGMGLERLAAVVQGV 243 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 +NY DLF L+ A TG Y + + RVI DHLR+ +F+I DGILP+NEGRG Sbjct: 244 DSNYATDLFMPLLSAIAVRTGCGYGKDEASDRSMRVIADHLRAITFMIVDGILPSNEGRG 303 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA + RLLG TEP + L + TEM AYPEL QA + + E+ERF Sbjct: 304 YVLRRILRRASRHGRLLGVTEPFLYELTGTVATEMEGAYPELAQAGDTCRKVVEGEEERF 363 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLD+GL +L+ +++ + L+G+ FKLYDT+G PLD++++ +GL D+ F Sbjct: 364 IGTLDQGLPILNRMVAE-AEAGSLDGESVFKLYDTYGFPLDLIEEAAREQGLVA-DLEGF 421 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 +ALE QR RAR ++ + EK + + L ++ T+F+GY L+ Sbjct: 422 QRALEAQRDRARKSAVFVAE--QEKPFITELTQRLRPTEFLGYQALQS------------ 467 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S+V+A+++ + +E V G VE+V D TPFY E GGQ+GD G G Sbjct: 468 -----------ESVVQAMLKGDALADEVVEGDDVELVLDATPFYPEGGGQVGDQGTLTGR 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 R+QI + K + + +H V G +RT L T+D R + NH+ATHLLH AL Sbjct: 517 EGRIQIRETTKVSGKLLLHKGTVVAGRVRTGEPLAATVDSVTRHGAARNHTATHLLHAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG V Q GS + P+ LRFD ++ KP+ + +L+ IE VN + N V T +M + Sbjct: 577 REVLGPQVKQYGSLVAPNRLRFDFSYFKPLRTRDLEEIEAMVNFHVLGNTFVRTDVMGIQ 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +AI +GA A G KY +RVRVV V G S LCGGTH TGEI I SE I Sbjct: 637 EAIHAGALAFFGDKYGERVRVVGV-----GEFSKELCGGTHCQHTGEIGSFRITSEGGIA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 +G+RRIEA+TG A H + ++ LA LK S VV Sbjct: 692 SGVRRIEALTGTGALDHGKKLESDVRELAELLKSSPSEVV 731 >gi|206889357|ref|YP_002248379.1| alanyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741295|gb|ACI20352.1| alanyl-tRNA synthetase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 875 Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust. Identities = 366/904 (40%), Positives = 550/904 (60%), Gaps = 44/904 (4%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL++F GHEL+ SS LIP +DP+L+FTN+GMV FK +F G+E+ Y TT Sbjct: 4 SEIRKLFLDYFVSKGHELVKSSPLIPKDDPSLLFTNAGMVQFKRVFLGEEQRPYSRATTC 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKH+DL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L + + Sbjct: 64 QKCIRAGGKHSDLENVGFTARHHTFFEMLGNFSFGDYFKRDAILFAWELLTEHFKLPKEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++++Y +D+EA ++W++ G+ +++I+R+ DNFW M +TGPCGPCSEI DQGE Sbjct: 124 LWVSIYKDDDEAAEIWEEEIGIPSERIVRLGEKDNFWQMGDTGPCGPCSEIIIDQGEDFG 183 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P S + +R++E+WNLVFMQ+ + + + LPK SIDTGMGLER+ V Q K Sbjct: 184 CGQPDCSVGCDCDRFLELWNLVFMQYNRDEEGKLTPLPKPSIDTGMGLERITAVKQGKRT 243 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N+D DLF+ +I +KY + ++ +VI DH+R+++FL+A+G++P+NEGRGYV Sbjct: 244 NFDTDLFEPIISEICSTLNVKYGKDRKTDISIKVIADHIRAATFLVAEGLIPSNEGRGYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA + +LL Y + + + ++G YPE++ + IE+ ++ E+ERF + Sbjct: 304 LRRIIRRAGRHIKLLEYDKTAFYRFVEPVVYKLGEVYPEIVSERERIEKIIKIEEERFLR 363 Query: 361 TLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +L++ + D ++++L K + ++ G FKLYDT GLP D+++++ L ID I F Sbjct: 364 SLEKAQQIFDDIINNLKKTDSKLIPGHEIFKLYDTFGLPFDLIKEMAQDSELQ-IDEIGF 422 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 Q L +QR RARA G E ++ L+ + +FIGY + + E Sbjct: 423 QQELNKQRERARAAQKSEEVGIGE-VYKQLRPQSENLRFIGY-----TDYETE------- 469 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + AIV+ E V E ++ E+ +TPFYAE+GGQ+GDTG I + Sbjct: 470 -----------TDIYAIVKNSERVNELNKDEEGEIFLFKTPFYAESGGQVGDTGMIISNS 518 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++ D KK G+ H V G ++ + ID + R+ + NH+ATHLLH AL Sbjct: 519 GKAEVYDT-KKISGLHCHKVRVIEGTIKEGDKVFAKIDLERRKAIKRNHTATHLLHAALR 577 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 T+LG HV Q GS + PD LRFD TH + + EL+ IE VN+ I +NLPV I + ++ Sbjct: 578 TVLGEHVKQAGSLVAPDRLRFDFTHFEAVNDEELREIERIVNEKILENLPVKIEIKSLDE 637 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ G AL KY D VRVV + S LCGGTH STGEI YIVSE S+ + Sbjct: 638 ALNEGVTALFEDKYEDTVRVVKIVG-----FSKELCGGTHCDSTGEIGSFYIVSEGSVAS 692 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGR-VEEIWEEYRKLQLIHAK 776 GIRRIEA+TG A + E+LK+++S LK ++ V R V E+ E+ ++++++ K Sbjct: 693 GIRRIEAVTGIEAFKYSNINREQLKAISSILKSAEPVKAVERLVAELKEKQQEIEVLKNK 752 Query: 777 RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 Q N+E++ +I V ++ + VD K L+++ D L++K+ II+L+ + Sbjct: 753 LISQ-NIEEIVKQAKEIDGVKALAVKLDGVDLKSLRTLSDKLKEKLHPAIILLIS-KADG 810 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + +L+ VT+D+ ++++A L R + + GG GGGR AQ G P+G ++ S Sbjct: 811 QGILLLSVTKDITNKYDAGKLMRNIVQAV-GGKGGGRQETAQGGCPDGESLEKVSEIFYS 869 Query: 895 FLKK 898 ++K Sbjct: 870 LIEK 873 >gi|42522107|ref|NP_967487.1| hypothetical protein Bd0501 [Bdellovibrio bacteriovorus HD100] gi|48428503|sp|P61698|SYA_BDEBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|39574638|emb|CAE78480.1| alaS [Bdellovibrio bacteriovorus HD100] Length = 907 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 380/938 (40%), Positives = 538/938 (57%), Gaps = 82/938 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR F+++F+KNGH+++PSSSLIP NDPTL+F N+GM FKN F G EK Y T Sbjct: 4 SEIRNAFIKYFEKNGHKVVPSSSLIPENDPTLLFANAGMNQFKNTFLGLEKRDYSRAVTA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ AI AW+ LTKE + + + Sbjct: 64 QKCVRAGGKHNDLENVGFTARHHTFFEMVGNFSFGDYFKKDAIHFAWEFLTKELAIPKEK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+TV+ D+EA +W G+ ++I R DNFW M +TGPCGPC+EIF+D G Sbjct: 124 LYVTVHISDDEAADIWHNQEGVPRERIFRF-DKDNFWKMGDTGPCGPCTEIFYDHGPKAG 182 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 I G +R++EIWNLVFMQ+ + LPK S+DTG GLERM+ +Q Sbjct: 183 TISDPFKGIEAGEDRFVEIWNLVFMQYFENPPGTLTPLPKPSVDTGGGLERMSAAMQGVF 242 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV------------NHRVIVDHLRSSSFLIADG 289 NNYD DLF+ +IQ + ++ ++Y + V RV+ DH RS+SFLIADG Sbjct: 243 NNYDTDLFQPMIQLACKIGNIEYISDKEVLAKNPAAAEVTSALRVLADHCRSTSFLIADG 302 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRRIMRRA+ Y R L + + + AL MGS YPEL + I Sbjct: 303 ALPSNEGRGYVLRRIMRRAIRYGRKLSADKSFLPGMAEALIESMGSVYPELKTRRDHILN 362 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407 T+R E++RF TLD+G +L+ L I L+G+V F++YDT+G P D+ + I Sbjct: 363 TIRDEEDRFIATLDKGTAILEDELKKAKSKGIKELSGEVVFRMYDTYGFPADLTRVIANE 422 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY----GATQFIGYDLL 463 +G+ ++ +F + +E+ R++++A G G E + Y + F+GY+ Sbjct: 423 QGIE-VNEAAFEKEMEDNRAKSKASWKGKSMGADEAHMIKFAKDYLQSGKSVTFLGYEGT 481 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 G D KV+ L+NG Q E V+E +G ++ + T FY E Sbjct: 482 IG------DGKVMG------LSNG----------QAE-VQELKTGDTGLMILNATTFYGE 518 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ GD G + D R ++ + K + I +HH +E G + ++V +D RR Sbjct: 519 GGGQSGDVGYIMHDTNRARVINTT-KIDDIVLHHVEIEHGSFKVGTAVVTGVDPVERRNT 577 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHSATHLLH AL +LG+HV+Q GS + RFD TH+KP++S E+K IED VN+ I Sbjct: 578 AANHSATHLLHAALRKVLGTHVTQAGSLVDSQKTRFDFTHNKPVSSEEIKKIEDLVNEQI 637 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 A+ PV T +M+ + A+ GA AL G KY VRV+++ G S LCGGTHV +T Sbjct: 638 ARCNPVQTEMMSHKAALEKGAMALFGEKYASDVRVLTM-----GDFSCELCGGTHVKNTS 692 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQ------ 753 EI L IVSE+ + +G+RRIEAIT A ++M D+ L + A F K Sbjct: 693 EIRLFKIVSEAGVSSGVRRIEAITADNALQYMMSAVTHLDDALAA-AGFQKSPHYIKHLE 751 Query: 754 -----GNVVGRVEEIWEEYRKLQLIHAKRKL---QLNVEDLSCHKI-------ADVNFMS 798 + RVE + ++ ++L+ +KL Q+NV+DL+ + + A + Sbjct: 752 TTGETATLANRVESLKDQVKQLE--KEMKKLQGGQVNVDDLAANALTFKTKAGASAKLVL 809 Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 + D + L V D L+ KIQSGI+++VG + +++ V++++ A DL + Sbjct: 810 ADVPLDDRQVLAEVTDHLKNKIQSGIVVVVG-QGDGSHPIIVSVSKEISGETKAGDLLKE 868 Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 A V+ GG GGGRP AQ PN + ++A + V S L Sbjct: 869 VAGVM-GGKGGGRPDFAQGAAPNRAQLNEAFSKVKSML 905 >gi|124267510|ref|YP_001021514.1| alanyl-tRNA synthetase [Methylibium petroleiphilum PM1] gi|205830143|sp|A2SI90|SYA_METPP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|124260285|gb|ABM95279.1| alanyl-tRNA synthetase [Methylibium petroleiphilum PM1] Length = 875 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 375/912 (41%), Positives = 526/912 (57%), Gaps = 60/912 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR+ FL+FF+ GH+++ SS ++P +DPTL+FTN+GM FK++F G +K Y T Sbjct: 2 KASEIRSAFLKFFESKGHQIVASSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYSRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ F L + Sbjct: 62 TAQKCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIAYAWELLTEVFKLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY ED+EA+++W K G+ A++I+RI N DNFW M +TGPCGPC+EI Sbjct: 122 DKLWVTVYAEDDEAYEIWNKQVGVPAERIVRIGDNKGARYASDNFWMMGDTGPCGPCTEI 181 Query: 176 FFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D E G E+G+RYIEIWN VFMQF + LPK S+DTGMGLER+ Sbjct: 182 FYDHGPEIPGGPPGSPDEDGDRYIEIWNNVFMQFNRDEAGVMHKLPKPSVDTGMGLERIT 241 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGIL 291 VLQ +NY+IDLF L+ A++Q G++ + +VI DH+R+ SF I DG++ Sbjct: 242 AVLQHVHSNYEIDLFVALLAAAKQAVDAAGAGDSDKDSPSLKVIADHIRACSFTIVDGVI 301 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRI RR + + LG +P L+ L +MG AYPEL +A+ + E L Sbjct: 302 PGNEGRGYVLRRIARRGIRHGYKLGARKPFFHTLVAELVRQMGEAYPELARAEARVTEVL 361 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+ERF +T+ G+ +L+ L+ G + L+G+ AFKL+DT+G PLD+ D+ RG+ Sbjct: 362 KQEEERFFQTIANGMEILESALA--GGAKTLDGETAFKLHDTYGFPLDLTADVCRERGVT 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL--RGSKFM 469 +D F+ A++ QR +ARA K+ L+ AT F GY+ L GSK Sbjct: 420 -VDQAGFDAAMKRQREQARA-------AGKFKMAAGLEYAGAATTFHGYEHLVHEGSK-- 469 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 V A+ G V A +G +V D TPFYAE+GGQ+G Sbjct: 470 ----------------------VTAVYVDGSAVPSAKAGDDAVIVLDHTPFYAESGGQVG 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G R+ + D QK +F HH V G +R L +D + R + NHS Sbjct: 508 DGGELRNGTSRVIVEDTQKIQADVFGHHGRVVEGEIRVGDVLNARVDGEQRARTVRNHSV 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H AL +LG HV Q GS + + RFD H+ P++ A++ +E VN I N P Sbjct: 568 THLMHKALREVLGGHVQQKGSLVNAERTRFDFAHNAPMSDAQIAKVEAIVNAEILANAPT 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 R++ E+A GA L G KY D VRV+ + S LCGGTHV TG+I L Sbjct: 628 QARVLPMEEAQKLGAMMLFGEKYGDEVRVLDIG------SSRELCGGTHVQRTGDIGLFK 681 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 +V+ES + AGIRR+EAITG A +++ + + LA LK + V GRV + E+ R Sbjct: 682 VVAESGVAAGIRRVEAITGDNALAYVQQLEGTVAGLAGALKAAPAEVPGRVAAVLEQLRT 741 Query: 770 L--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGI 824 L +L K KL + D + DV + + + + D+K L+ +D L+ K++S Sbjct: 742 LEKELAALKGKLASSQGDGLLAQAVDVKGLKVLAARLEGADAKALRDTLDQLKNKLKSAA 801 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+L + + K + VT D R A +L A+ + GG GGG+P +A +GG + Sbjct: 802 IVLA-VVEGGKVQLAAGVTADATARVKAGELVNFVAQQV-GGKGGGKPDLAMAGGTDPAG 859 Query: 885 ADQAIAGVASFL 896 A+A VA ++ Sbjct: 860 LGAALASVAGWV 871 >gi|169831075|ref|YP_001717057.1| alanyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C] gi|205830046|sp|B1I370|SYA_DESAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169637919|gb|ACA59425.1| alanyl-tRNA synthetase [Candidatus Desulforudis audaxviator MP104C] Length = 880 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 367/908 (40%), Positives = 549/908 (60%), Gaps = 66/908 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S IR +LEFF GH ++PS+SLIP NDPTL++T++GMVPFK FTG P ++ V Sbjct: 2 NSSEIRKRYLEFFAARGHRVIPSASLIPGNDPTLLWTSAGMVPFKPYFTGVATPEFRRVV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R D++ VGRT RHHTFFEMLGNFSFG YFKERAI AW+ +T++ L Sbjct: 62 TCQKCLRT----PDIEMVGRTARHHTFFEMLGNFSFGDYFKERAIPWAWEFVTRDLGLAP 117 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 L+I+VY +D EAF W+ + G+ A++I+R+ + NFW + GPCGPCSE+++D+G Sbjct: 118 EHLWISVYLDDNEAFDHWRGL-GVPAERIVRLGRDTNFWEIG-VGPCGPCSEVYYDRGPA 175 Query: 181 ------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 C PG + +R++EIWNLVF+Q+ + + L IDTGMGLER+A Sbjct: 176 YGCESASCGPGC------DCDRWLEIWNLVFIQYFRNEAGDYSPLESPGIDTGMGLERVA 229 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGIL 291 +VLQ N+D DLF+ LI + V G++Y G++ +VI DH R+ +F IADG+L Sbjct: 230 SVLQGVNTNFDTDLFRGLIDYTAGVLGVRY-GDDPAGDAALKVIADHGRAITFAIADGVL 288 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYV+RR++RRA+ A LLG +P + + A+ +M AYPEL A+ + + + Sbjct: 289 PSNEGRGYVIRRLLRRAVRKALLLGREKPFLEGVALAVIEQMAGAYPELETARDSVRKVV 348 Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 R E+ERF +TL +G ++ +++ K L G AF+LYDT+G PL++ ++I +G Sbjct: 349 RFEEERFRQTLTQGNEIIGRLIAEARAEKRSTLEGAAAFQLYDTYGFPLELTREICAEQG 408 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKF 468 LA +D F AL+ Q+ +AR+ + +F +L+++ G T+F+GY+ L Sbjct: 409 LA-VDEAGFEAALKAQQQKARSSRRETRYVEERETFFRNLRDEIGLTRFVGYEQLEAD-- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + V+A+++ G+ V A SG++V +V D TP YAE+GGQ+ Sbjct: 466 ---------------------AGVRALIRDGQRVPAAGSGEQVSLVVDTTPCYAESGGQV 504 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G G+ +R +ITD EG+ VH +VE G+L + + +D RR++ NH+ Sbjct: 505 GDHGLIEGENVRGRITDTFAPVEGLHVHEVVVEAGVLEEGARIRILVDGSRRRKICRNHT 564 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH L +LG+HV+Q GS + P+ LRFD TH +P++ AEL +E +N+I+ NL Sbjct: 565 ATHLLHRTLKAVLGTHVNQAGSLVAPERLRFDFTHIQPLSEAELAEVESRINEIVLSNLR 624 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + + + A GA AL G KY D VRVV ++ GV S LCGGTHV ST EI + Sbjct: 625 VESFQTSFDRARELGAVALFGEKYGDLVRVVQID----GV-SMELCGGTHVLSTAEIGPV 679 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I +ESS+ AG+RR+EA+TG A + L ++E+L +A ++V +V VE + + + Sbjct: 680 KITAESSVGAGLRRLEAVTGMEALAFLNSRNEQLHRIAQAVRVPVSELVVHVERLLDHQK 739 Query: 769 KLQLIHAKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 KLQ + + + +L V ++ S H+ V ++ + D EL+S++D L++++ Sbjct: 740 KLQRENEQLQDRLQVYEVKELLDRASTHE--GVRILATSVRARDMAELRSMLDLLRERLG 797 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +I+L G + K S++ V+ DL+ R A + GGGGGGRP MAQ+GG N Sbjct: 798 SAVIVL-GSAVNGKVSLVASVSRDLVARGLHAGAIIKEAAAVAGGGGGGRPEMAQAGGKN 856 Query: 882 GNKADQAI 889 K +A+ Sbjct: 857 PEKLTEAL 864 >gi|207744018|ref|YP_002260410.1| alanyl-trna synthetase protein [Ralstonia solanacearum IPO1609] gi|206595420|emb|CAQ62347.1| alanyl-trna synthetase protein [Ralstonia solanacearum IPO1609] Length = 825 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 345/784 (44%), Positives = 473/784 (60%), Gaps = 54/784 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR FL FF+ GH ++ SS L+P NDPTL+FTNSGMV FK++F G +K Y + Sbjct: 16 ASDIRQKFLTFFETKGHTVVRSSPLVPGNDPTLLFTNSGMVQFKDVFLGSDKRPYVRAAS 75 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 VQ+C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK A+ AW+LLT+E+ L Sbjct: 76 VQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDALVWAWELLTQEYKLPAD 135 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIF 176 +L+ TVY D+EA+ +W K+ GL ++++RI N DNFW MAETGPCGPCSEIF Sbjct: 136 KLWATVYQTDDEAYDIWTKVIGLPPERVVRIGDNKGAPYASDNFWQMAETGPCGPCSEIF 195 Query: 177 FDQGECIPGGLPGSSE-EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTGMGL 230 +D G I GG PGS E +G+RYIEIWN VFMQF++Q + LP +DTGMG+ Sbjct: 196 YDHGPDIWGGPPGSPEADGDRYIEIWNNVFMQFDRQLDPATGEYTLTPLPAPCVDTGMGM 255 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 ER+A +LQ +NY+IDLF+ LI A+ + T K NN + RVI DH+R+ SFLI DG+ Sbjct: 256 ERLAAILQHVHSNYEIDLFQALIAAAARETNTKDLANNSL--RVIADHIRACSFLIVDGV 313 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI+RRA+ + LG L+ L T+MG AYPEL +A+ + + Sbjct: 314 IPGNEGRGYVLRRIIRRAIRHGYKLGCRAAFFHKLVDDLVTQMGEAYPELREARDRVVDV 373 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 LR+E+ RF +T++ G+ +LDG L L ++L+G++AFKL+DT G PLD+ QD+ C Sbjct: 374 LRTEEARFFETIEHGMSILDGALGELKASGSKMLDGELAFKLHDTFGFPLDLTQDV-CRE 432 Query: 409 GLAGIDIISFNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +D +F+ A+ QR +ARA L +GT L T F GYD L Sbjct: 433 NDVIVDEAAFDAAMNRQREQARAAGKFKLAAGT-------LDYTGDKTTFHGYDQL---- 481 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 ++E ++ V A+ G V+ GQ VV D TPFYAE+GGQ Sbjct: 482 -VRE-----------------TARVTALFVDGTSVDAMQPGQTGVVVLDHTPFYAESGGQ 523 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G + + D K +F HH + G+L+ ++ +D R + NH Sbjct: 524 VGDQGTLKAATVWFDVADTLKVLPEVFGHHGTLRTGVLKVGDAVAAEVDAVRRARTMRNH 583 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+H AL +LG HV Q GS + D RFD +H+ P+T +++ +E VN I N Sbjct: 584 SATHLMHKALREVLGGHVQQKGSLVDADKTRFDFSHNAPMTPLQIREVEARVNAEIFANA 643 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 +IM +DA+ +GA AL G KY D VRV+S+ S LCGGTHV+ TG+I L Sbjct: 644 ATHAQIMGFDDAVKNGAMALFGEKYGDEVRVLSIGT------SKELCGGTHVARTGDIGL 697 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV ES + AGIRR+EAITG +L D ++ A+ L+ + R+ ++ ++ Sbjct: 698 FKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRINEAAAALRAQPSELTQRIGQVQDQV 757 Query: 768 RKLQ 771 + L+ Sbjct: 758 KTLE 761 >gi|312880061|ref|ZP_07739861.1| alanyl-tRNA synthetase [Aminomonas paucivorans DSM 12260] gi|310783352|gb|EFQ23750.1| alanyl-tRNA synthetase [Aminomonas paucivorans DSM 12260] Length = 880 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 354/891 (39%), Positives = 521/891 (58%), Gaps = 54/891 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL +F++ G PS SL+P +DPTL+FT +GMVPFK F G + P TT Sbjct: 6 AAKLREQFLSYFEEKGSRRYPSFSLVP-DDPTLLFTIAGMVPFKPYFLGLKTPEVTRATT 64 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR ND+DNVGRT RHHTFFEMLGNFSFG YFK I AW LT+ LD Sbjct: 65 AQKCVRT----NDIDNVGRTARHHTFFEMLGNFSFGDYFKAEVIPWAWTFLTERVGLDPN 120 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 R+Y TVY +D+EA +W+ GL+AD++IR+ DNFW+ GPCGPCSE+ +DQG Sbjct: 121 RMYATVYRDDDEAADIWRNSVGLAADRVIRLGEEDNFWAAGPVGPCGPCSELLYDQGPAF 180 Query: 184 ----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P PG S +RY+EIWNLVFMQF + LPK +IDTGMGLER+++V+Q+ Sbjct: 181 SCGSPDCAPGCS--CDRYLEIWNLVFMQFNRDEAGVLTPLPKKNIDTGMGLERLSSVVQQ 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 ++++ DLF+ L+ + + G+ Y G+++ RVI DHLR+++F+IADGILP+NEG Sbjct: 239 VKSDFETDLFRPLVDKACSLAGVSYGAGPGSDLAV-RVIADHLRATAFMIADGILPSNEG 297 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 GYVLRR++RRA+ + RLL EP ++ LLP + + Y EL++ + I + + E+ Sbjct: 298 TGYVLRRLLRRAVRFGRLLDLREPFLLELLPQVEATLADPYQELLRYRSTIAQVVDLEER 357 Query: 357 RFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 RFG+TL++G LL+ G G E L+G+VAF+LYDT+G P+++ +++ GL+ + Sbjct: 358 RFGRTLEQGSDLLEQEIGCTKRSGGKE-LSGEVAFELYDTYGFPVELTEEMCSEAGLS-V 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F QA+E Q+ RARA S + + L ++ G T F+GY+ M+E R Sbjct: 416 DQKGFAQAMERQKERARASSKQTCATMGSNAYTELADRQGPTVFLGYE-------MEEAR 468 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 V A+++ G +++ A G+ EVV D+TPFYAE GGQ+GD G Sbjct: 469 ----------------GTVLALLRDGVLLDRAEEGETAEVVLDRTPFYAERGGQVGDQGT 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+G+ ++ D + H + +G+L +L +D R + +H+ THLL Sbjct: 513 LSGEGLEAEVEDTVHPCGDLVAHRVRIRKGVLLPGATLEARVDGARRGDIRRHHTTTHLL 572 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL+ +LG HV Q GS ++P+GLRFD H P+T +++ +ED VN+ + +NLPV TR Sbjct: 573 HEALTQVLGDHVRQAGSLVSPEGLRFDYNHFAPLTPEQIQEVEDRVNEQVLKNLPVTTRE 632 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E A A GA AL KY +RVRVVSVE +S+ LCGGTHV +TGEI L+ + + Sbjct: 633 TDLETAKALGAKALFEEKYGERVRVVSVEG-----YSTELCGGTHVCATGEIGLVKVHKD 687 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRI+A +G+ + L+ + S L V + + + EE++ L+ Sbjct: 688 EGIGAGLRRIQATSGRASLRWSQEVSTVLRDVTSLLTVDPDALCEKTASLLEEHKALERK 747 Query: 774 HAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + LQ + L ++ DV + ++D+ L+ + D ++ + S + +L Sbjct: 748 WRQALLQTELMRLDAVVMGRKRVGDVEVVISFYEDLDTDLLRQIGDQVKGRFPSSVSVLA 807 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + EK V++ E + +A LA+ S L G GGG+P MAQ GG Sbjct: 808 TKNAEKFLVVIMATDEAVAKGVHAGKLAK-SLGALLGCNGGGKPQMAQVGG 857 >gi|255003991|ref|ZP_05278792.1| alanyl-tRNA synthetase [Anaplasma marginale str. Virginia] Length = 879 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 352/768 (45%), Positives = 459/768 (59%), Gaps = 49/768 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 ++SSIR FLEFF KNGH+L S+ L+ D +L+FT++GMVPFK FT Sbjct: 5 SLSSIRKKFLEFFVKNGHKLYASAPLVATGDASLLFTSAGMVPFKQAFTSGSSVDGAKTA 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+RAGGKHNDL+NVG TNRHHTFFEMLGNFSFG YFKERAI+LAW +T+E L + Sbjct: 65 ASQKCLRAGGKHNDLENVGYTNRHHTFFEMLGNFSFGDYFKERAIELAWRFVTEEMCLSK 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+ITVY ED+EAF +WKKI+G D+II+I+T+DNFWSM +TGPCGPCSEIF+D GE Sbjct: 125 DRLWITVYSEDQEAFDIWKKITGFPDDRIIKISTSDNFWSMGDTGPCGPCSEIFYDYGEH 184 Query: 183 IPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + GG PGS + +G R+ E+WNLVFMQF + E LP IDTGMGLE A V+Q Sbjct: 185 VQGGPPGSKDADGPRFTEVWNLVFMQFCRDEHGELNPLPHKCIDTGMGLE-TAAVVQGVC 243 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NYD DLFK +I+ S+ V G NN + HRVI DH+R+++FLI++G+ P NEGR YVL Sbjct: 244 DNYDTDLFKAVIRKSQDVFGSP---NNSIAHRVIADHIRAAAFLISEGLSPGNEGRNYVL 300 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTE-----MGSAYPELIQAKLLIEETLRSEDE 356 RRI+RRA+ YA L + + +LP L E MG AYPEL++ + I TLRSE E Sbjct: 301 RRIIRRAVRYAYQLDPSNVAIHEVLPVLTKEGSAGYMGDAYPELVRCEQSITSTLRSEGE 360 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 F TL RG+ LL+ + L ++L GDVAFKLYDT G PLDI DI RGL D Sbjct: 361 GFVDTLRRGMALLEKEIGGLLPGQVLLGDVAFKLYDTFGFPLDITLDIAKERGLK-FDQE 419 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN+ + EQ+ A + GL ++W L+ ++ T+F+GYD Sbjct: 420 GFNKGMGEQKGLA-STGWGLVKMLPHRLWEELQAQHKNTRFVGYD--------------C 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 C + V +I + G V+ SG+K ++ D +PFYAE+GGQ GD G G Sbjct: 465 CS---------TKASVLSITRDGMAVQSVNSGEKACLLLDVSPFYAESGGQEGDKGSITG 515 Query: 537 -------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G + +KA + +H + G+ ++ ID R +L NHSA Sbjct: 516 VSGVNNSGGANIAEVTYTRKASNLHIHECTITSGVFNVGDTVDAAIDVDRRERLKANHSA 575 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 TH+LH L T + ++ Q GS + D LRFD ++ +T ++ IE VN I N PV Sbjct: 576 THILHSVLRTHIDGNIQQKGSLVAEDKLRFDFNYASALTKEQITLIEREVNRRIMSNKPV 635 Query: 650 VTRIMNREDAIASGAAALLGTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 +T + E A+ GA AL G KY++ VRVVS+ S LCGGTHV TG+I Sbjct: 636 LTDHCSFEAAVQGGAIALFGEKYSEHSVRVVSMG------DSKELCGGTHVRYTGDIGAF 689 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 IVSES I G+RRIEAITGQ L + L ++ L V G V Sbjct: 690 KIVSESGIALGVRRIEAITGQSVVDGLRKDGDILLHISERLGVPVGEV 737 >gi|171058684|ref|YP_001791033.1| alanyl-tRNA synthetase [Leptothrix cholodnii SP-6] gi|205830133|sp|B1Y1G9|SYA_LEPCP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|170776129|gb|ACB34268.1| alanyl-tRNA synthetase [Leptothrix cholodnii SP-6] Length = 875 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 371/910 (40%), Positives = 530/910 (58%), Gaps = 60/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+TFL+FF+ GH+++ SS ++P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 4 SEIRSTFLKFFESKGHQIVGSSPVVPGDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+LLT+ F L + + Sbjct: 64 QKCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTEHFKLPKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFF 177 L++TVY ED+EA+++W K+ G+ A++I+RI N DNFW M +TGPCGPC+EIFF Sbjct: 124 LWVTVYSEDDEAYEIWNKVVGVPAERIVRIGDNKGARYMSDNFWMMGDTGPCGPCTEIFF 183 Query: 178 DQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D G E+G+RYIEIWN VFMQF + LPK S+DTGMGLER+ V Sbjct: 184 DHGEGIPGGPPGSPDEDGDRYIEIWNNVFMQFNRTEDGVMHKLPKPSVDTGMGLERITAV 243 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH-----RVIVDHLRSSSFLIADGIL 291 LQ +NY+IDLF + + ++ G V+ +VI DH+R+ SF I DG++ Sbjct: 244 LQHVHSNYEIDLF--VALLAAAKAAVESAGGKDVDPESPSLKVIADHIRACSFTIVDGVI 301 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRI RRA+ + LG P ++ L +MG AYPEL A+ + E L Sbjct: 302 PGNEGRGYVLRRIARRAIRHGYKLGARTPFFHKIVAELVAQMGEAYPELRAAQARVTEVL 361 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+ERF +T+ G+ +L+ L+ G + ++G+ AFKL+DT+G P+D+ D+ RG+ Sbjct: 362 KQEEERFFQTIQHGMEILEHALA--GGTKQVDGETAFKLHDTYGFPVDLTADVCRERGVT 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F+ A+E QRS+ARA K+ L T F GY+ L Sbjct: 420 -VDQAGFDAAMEHQRSQARA-------AGKFKMAAGLAYSGAPTAFHGYEHL-------- 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +C+ +S V AI G V+ A +G +V D TPFYAE+GGQ GD+ Sbjct: 464 ----VCE----------TSKVVAIYVDGTPVDAAQAGDDAAIVLDHTPFYAESGGQAGDS 509 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G R+ + D K +F HH + G ++ S V +D + R + NHSATH Sbjct: 510 GELRNGSTRVVVADTFKIQADVFGHHGRIVEGSVKVGDSFVAKVDAELRAKTVRNHSATH 569 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG+HV Q GS + + RFD H+ P++ A+++ +E VN I N Sbjct: 570 LMHKALREVLGAHVQQKGSLVNAERTRFDFAHNAPVSDAQIRQVEAIVNAEILANAAASA 629 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 ++M +DA SGA L G KY + VRV+S+ S LCGGTHV +TG+I L +V Sbjct: 630 QVMALDDAQKSGAMMLFGEKYGETVRVLSIG------SSKELCGGTHVKATGDIGLFKVV 683 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 +ES + AGIRRIEAITG A ++L + + +AS LK + V R+ + ++ R L Sbjct: 684 AESGVAAGIRRIEAITGDNALAYLQSLESTVNGVASALKSAVPEVPARISGLQDQVRALE 743 Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +L K KL + D + D+N ++ ++ D+ L++ MD L+ K+++ I+ Sbjct: 744 KELAALKGKLASSQGDSLLAQTVDINGLKVLAVVLEGADAATLRTTMDQLKNKLKTAAIV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K + VT D + A +L A+ + GG GGG+P MA +GG + +K Sbjct: 804 LAAVDG-GKVQLAAGVTADSTAKVKAGELVNFVAQQV-GGKGGGKPDMAMAGGTDPSKLA 861 Query: 887 QAIAGVASFL 896 A+A V ++ Sbjct: 862 AALASVPGWV 871 >gi|192362500|ref|YP_001981850.1| alanyl-tRNA synthetase [Cellvibrio japonicus Ueda107] gi|190688665|gb|ACE86343.1| alanyl-tRNA synthetase [Cellvibrio japonicus Ueda107] Length = 875 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 388/909 (42%), Positives = 549/909 (60%), Gaps = 59/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL++F+ GH ++ SSSL+P NDPTL+FTN+GM FK++F G E Y + Sbjct: 4 AEIRDAFLKYFESKGHTVVASSSLVPGNDPTLLFTNAGMNQFKDVFLGGETRSYTRAASS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+ LT + ++ Sbjct: 64 QRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIAYAWEFLTSKAWLNIPA 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEI 175 +L++TVY D+EA+ +W G+ A++IIRI N DNFW+M +TGPCGPC+EI Sbjct: 124 EKLWVTVYASDDEAYAIWHNEVGVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGPCTEI 183 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTGMGLER++ Sbjct: 184 FYDHGPDIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 V+Q +NY+IDLF+HL+ A+ + TG E ++ RVI DH+RS SFL++DG+LP+ Sbjct: 244 AVMQHVHSNYEIDLFQHLLSAAVEATGTSDLESKSL---RVIADHIRSCSFLVSDGVLPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG +P L+ AL MG AYPEL + + IE L Sbjct: 301 NEGRGYVLRRIIRRAIRHGNKLGQKQPFFHKLVKALAEVMGDAYPELHKNRAHIERVLLQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTLD+G+ +L+ L+ L EI G + F LYDT+G P+D+ DI RGL I Sbjct: 361 EEEQFEKTLDKGIAVLEDALAKLSGTEI-PGKLVFTLYDTYGFPVDLTNDIARERGLT-I 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D ++ A+ EQR+RARA +GT + + ++ AT+F+GY + + E Sbjct: 419 DQDGYDAAMAEQRARARA------AGTFKVDYSAVGLDLPATEFLGY------RQLAEQG 466 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ A+++ + V+ V G VV D+TPFYAE+GGQ GD G Sbjct: 467 KVV-----------------ALIKDSKKVDRLVEGDDGVVVLDRTPFYAESGGQAGDCGY 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G RL++ D QK+A +H V +G + +D R+ ++NHSATHL+ Sbjct: 510 LEQGGNRLEVRDCQKQANA-HLHLVHVLQGAISVGDVFGAKVDANVRQATALNHSATHLM 568 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG HV+Q GS + + LRFD +H + +T +LK+IE VND + N V T + Sbjct: 569 HAALRKVLGEHVTQKGSLVDSERLRFDFSHFEAVTPEQLKTIETLVNDQVRANSAVATEL 628 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A A GA AL G KY D VRV+++ G S LCGGTHV+ TG+I + I SE Sbjct: 629 CDMDTAKAKGAMALFGEKYGDTVRVLTM----GDGFSVELCGGTHVARTGDIGVFRITSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKL-KSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 S + AGIRRIEAITG +A + L Q E L + A +K ++ N++ +++ + + RKL+ Sbjct: 685 SGVAAGIRRIEAITGTKALA-LFDQVESLVDAAARSIKANRDNLLEKLDALVAQNRKLEK 743 Query: 772 -LIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L K +L + DVN ++ + D++ L+ +D + K+ S +++L Sbjct: 744 DLAGLKTRLATAGSGDVLSQAQDVNGIKVLALNLEGADARSLRDTVDQFKNKLGSAVVLL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ VT+D+ + A DL A + GG GGGRP MAQ GG + + Sbjct: 804 AAVEND-KVSLVAGVTQDITAKVKAGDLMAHVAGQI-GGKGGGRPDMAQGGGTDVARLAD 861 Query: 888 AIAGVASFL 896 A+A V ++ Sbjct: 862 ALASVLPWV 870 >gi|71891957|ref|YP_277687.1| alanyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|83305841|sp|Q493M6|SYA_BLOPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71796063|gb|AAZ40814.1| alanyl-tRNA synthetase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 879 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 370/899 (41%), Positives = 538/899 (59%), Gaps = 62/899 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N+ IR FL FF+K GH+++ SS+LIP +D TL+FTNSGM FKNIF G +KP+++ V Sbjct: 4 NIDDIRQEFLNFFKKKGHKIISSSTLIPNSDQTLLFTNSGMNQFKNIFLGIDKPLFKRVA 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 T Q+CVRAGGKHNDL+NVG T RH TFFEMLGNFSFG YFK AIQ AW+LLT F+L Sbjct: 64 TAQRCVRAGGKHNDLNNVGYTERHLTFFEMLGNFSFGDYFKNEAIQFAWELLTDVNWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TV++ D E++ +W + + I++I +N DNFW M GPCGPCS Sbjct: 124 SKNKLWVTVHNCDGESYDIWSNQIDIPNEHIVKIGSNTNDFCDSDNFWQMGNIGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D+G+ GG PGS EE GERY+EIWNLVF+QF++Q LP +S+DTGMGLER Sbjct: 184 EIFYDRGDRFQGGPPGSLEEFGERYVEIWNLVFIQFDRQENGRLLSLPMLSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR---VIVDHLRSSSFLIADG 289 + ++LQ +N+ ID+FK LI + ++ + N+I +R VI DH+R+ SFLI DG Sbjct: 244 ITSILQGVNSNFSIDVFKKLISSISRIMKI----NDIYINRSVYVIADHIRACSFLIQDG 299 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 +LPANEGRGYVLRRI+RRA+ + + LG + L+ L M L + K I E Sbjct: 300 VLPANEGRGYVLRRIIRRAILHGKKLGVNDIFFYKLVSPLIKYMQHIADILHEKKDFIAE 359 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 L SE++ F TL RGL LL+ L L K LNG++AF LYDT+G P ++ QD+ RG Sbjct: 360 ILLSEEKLFQDTLKRGLELLEKQLIRL-KGNCLNGEIAFNLYDTYGFPFELTQDVCLKRG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D F+QA+ Q+ + L + EK+ SL ++ F+GYD Sbjct: 419 IH-VDQEGFDQAMLTQKKYTK--ELNKFDISYEKL--SLCNV--SSIFVGYD-------- 463 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 K++C+ S V A+ Q + + + + ++ V+ + TPFY E+GGQ+G Sbjct: 464 ----KLICK-----------SRVMALFQNNKSINKIYTKEEGIVILNNTPFYGESGGQIG 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G Q+++ +K + I H IV G + +V +D R+ +S+NHSA Sbjct: 509 DCGQLNTISGFFQVSNTKKYGQTI-GHLGIVNSGTISVGEEIVAQVDQHKRKCISLNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL ALS +LGSHV+Q GS + LRFD H +T+ ++ ++E+ VN+ I +N P+ Sbjct: 568 THLLRAALSQVLGSHVTQKGSLVNDRYLRFDFYHHATMTTTQMNTVENIVNEQIWKNAPI 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 +M E A SGA L+ +Y+ +VRV+ + G S+ LCGGTH TGEI + Sbjct: 628 TVDVMPIELARNSGAVILINKQYDKKVRVLKI-----GNFSTELCGGTHAEHTGEIGVFM 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I E SI AGIRR+EA+T A S + LK++ + N++ ++ E Y+K Sbjct: 683 ITKECSIAAGIRRVEAVTNNVALSAIHQYKMLLKNIFQSTQSDDKNILSKIHEFKCRYQK 742 Query: 770 LQL-IHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ I R Q+ + LS + I DV + + + SK L ++ D ++ +++SG+ Sbjct: 743 LEKEIDTLRNQQIIQQSLSFIKDVYYIKDVRILVKQVVNMTSKTLFNMTDCIKHQLKSGV 802 Query: 825 IMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 I+L+ ++ KK ++++ VT+DL+ +R NA+ L K+L GG GGGRP AQ+G N Sbjct: 803 IVLINLNTNKKINLVVAVTKDLIERNRINALSLVHYIIKIL-GGKGGGRPDFAQAGINN 860 >gi|108808831|ref|YP_652747.1| alanyl-tRNA synthetase [Yersinia pestis Antiqua] gi|122382877|sp|Q1C420|SYA_YERPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|108780744|gb|ABG14802.1| alanyl-tRNA synthetase [Yersinia pestis Antiqua] Length = 738 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 340/722 (47%), Positives = 460/722 (63%), Gaps = 49/722 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SS+L+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + +L++TVY+ D+EA+ +W G+ ++IIRI N DNFW M +TGPCGPCS Sbjct: 124 PKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCS 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIFFD G+ I GG PGS+EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NY+IDLF+ LI A VTG + + RVI DH+RS +FLI+DG++P Sbjct: 244 IAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSKSL--RVIADHIRSCAFLISDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MG A EL Q + ++E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD LS L D L+G+ AF+LYDT+G P+D+ D+ R L Sbjct: 362 TEEEQFARTLERGLALLDDELSKLTGD-TLDGETAFRLYDTYGFPVDLTADVCRERNLK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F QA+E QR RAR S G G+ + SL A+QF GYD ++ Sbjct: 420 VDEAGFEQAMEAQRRRARESS-GFGAD-----YNSLIRVDSASQFSGYDHVQ-------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + V A+ + GE V+E +G++ VV ++TPFY E+GGQ+GD G Sbjct: 466 ---------------QHATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 +TD QK + I H I+ G LR S+ +D R ++ +NHSATHL Sbjct: 511 ELKNATATFSVTDTQKYGQAI-GHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + LRFD +H + + +++ +ED VN+ I +N+PV T Sbjct: 570 LHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTE 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M + A GA AL G KY+D+VRV+++ G S+ LCGGTH S TG+I L I++ Sbjct: 630 VMELDAAKEKGAMALFGEKYDDQVRVLTM-----GDFSTELCGGTHASRTGDIGLFRILT 684 Query: 713 ES 714 ES Sbjct: 685 ES 686 >gi|206602304|gb|EDZ38785.1| Alanyl-tRNA synthetase [Leptospirillum sp. Group II '5-way CG'] Length = 891 Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust. Identities = 376/916 (41%), Positives = 537/916 (58%), Gaps = 72/916 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N +R FL +F +GH+++PS+SLIP DPTL+FTN+GMVPFK+IF G EK + Sbjct: 2 NSWELRQKFLLYFNGSGHDVVPSASLIPAGDPTLLFTNAGMVPFKDIFLGAEKTTRKRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 ++QKCVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI AW LTKE +D+ Sbjct: 62 SIQKCVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAISFAWTFLTKELGMDR 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R L++TVY ED+EA +LW++++ + D+I+R+ DNFW M +TGPCGPCSEI DQGE Sbjct: 122 RLLWVTVYREDDEAERLWREVTDVLPDRIVRLGEKDNFWQMGDTGPCGPCSEILVDQGER 181 Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P + +RY+EIWNLVFMQ+++ ++ LP+ SIDTGMGLER++ V+Q+K Sbjct: 182 FSCGSPDCKVGCDCDRYLEIWNLVFMQYDRNSEGVLSPLPRPSIDTGMGLERLSAVIQKK 241 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NY+ DLF LI+ E + + Y EG+ +RV+ DHLRSS FL+ +GI P+NEGR Sbjct: 242 DSNYETDLFMPLIRTIETYSRVPYGAGEGSLDHAYRVMADHLRSSVFLLHEGIAPSNEGR 301 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 G+VLRRI+RRA+ + R LG P++ L ++ M YPEL + L I++ LR E+ R Sbjct: 302 GHVLRRIIRRALLFGRELGLPHPILPALADSVAEMMAKPYPELRTSLLRIQDVLRLEEGR 361 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL+ GL L+ +L L K +++ G++ F L+DTHG PLDI++D +G+ +D Sbjct: 362 FHQTLESGLPLVQEMLRTLEKKQEKVFPGEMLFLLHDTHGFPLDIVEDAAKMQGIL-LDY 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + +EEQR R R+ +G E S + +F GY+ Sbjct: 421 KGFEEKMEEQRERGRSS----WTGKKEDFPLSSDRLKESVEFQGYE-------------- 462 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + V +++ E V+E +G+ V VV D+T FY E GGQ+GD G I Sbjct: 463 ---------KTSLQGTVLFLLKGKEEVKEVHAGESVLVVLDKTVFYPEGGGQVGDVGDLI 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G +++ +K G V V G + ++ +D + R+ +H+ATHLLH Sbjct: 514 GPFGYIRVRGAKKPYPGWIVLAGEVVSGKVSVGETIDQHVDEEARQGSERHHTATHLLHA 573 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL T+LG V Q GS + P+ LRFD T +P++ L ++E VN I +N PV R M Sbjct: 574 ALRTVLGEQVRQAGSLVAPERLRFDFTCPQPVSPENLLAVEALVNGWIFRNSPVDAREME 633 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + A+ GA A KY DRVRVV V S LCGGTHV STG+I L I+ E+ Sbjct: 634 KSKALDMGALAFFDEKYGDRVRVVQVPGT-----SVELCGGTHVRSTGQIGSLLILQETG 688 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE---YRK-LQ 771 + AGIRRIEA+ G A + ++LK L L+ ++ + I E Y+K +Q Sbjct: 689 VAAGIRRIEAVAGPLAYQKAVTWRQELKGLRELLEAGTSSLEEKTRTILRENAAYQKEIQ 748 Query: 772 LIHAK---------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + ++ RK L V+ H++A ++ +S DS+EL++ MDA++ KI S Sbjct: 749 SLKSRLFSLEEKHSRKEMLEVDG---HQLAVIH-----VSLEDSRELRARMDAIKSKIPS 800 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPN 881 G I+L+G + +K A L + DL + F + L+A+V GG GGG+P A+ GGP Sbjct: 801 GAILLIGETTDKLA-FLGWTSPDLGEAFPISQWVKTLAAEV--GGKGGGKPSWAEGGGPK 857 Query: 882 GNKADQAIAGVASFLK 897 + V SFL+ Sbjct: 858 PDD-------VGSFLQ 866 >gi|154250174|ref|YP_001410999.1| alanyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1] gi|205830091|sp|A7HN59|SYA_FERNB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|154154110|gb|ABS61342.1| alanyl-tRNA synthetase [Fervidobacterium nodosum Rt17-B1] Length = 867 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 384/912 (42%), Positives = 555/912 (60%), Gaps = 76/912 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +L FF+K GH+ LPS+SLIP +DP LMFT +GMVPFK IF G+ PVY VTT QK Sbjct: 9 IREAYLSFFEKKGHKRLPSASLIP-DDPQLMFTVAGMVPFKPIFWGKVDPVYPRVTTCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ +TK ++ + +L+ Sbjct: 68 CVRT----NDIENVGRTPRHHTFFEMLGNFSFGDYFKQEAIEWAWEFVTKVLEMPEEKLW 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIP- 184 ++VY+ D+EA+++W+K+ G+ KI+R++ DNFW A TGPCGPCSEIF+D G +P Sbjct: 124 VSVYEYDDEAYEIWRKL-GVPERKIVRMSKEDNFWGPAGPTGPCGPCSEIFYDTGVEVPV 182 Query: 185 --GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + RYIEIWNLVF +F Q + LP+ +IDTG GLER++ ++Q Sbjct: 183 PEGQDPTPANTDGRYIEIWNLVFTEFYQDEEGNLHPLPRKNIDTGAGLERISAMMQGVYW 242 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N+D DLFK +I++ E V + Y+ + + V+ RVI DH+RS +F+IADG+LP+NEGRGYV Sbjct: 243 NFDTDLFKPIIESIENVLKVSYKSDKVKDVSIRVIADHVRSVTFMIADGVLPSNEGRGYV 302 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA+ + LLG EP + ++ ++ +MG YPE+++ + +E ++SE+ +F Sbjct: 303 LRRVLRRALRHGVLLGAKEPFLYKIVDSVVQKMGKIYPEIVEKQSFVENIVKSEELKFIN 362 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 L RGL ++ +++ GK ++ + AFKLYDT+G P+DI++DI G +D F + Sbjct: 363 NLSRGLEIVQKIVTTSGK---ISAEDAFKLYDTYGFPIDILRDIATENGYE-LDEKGFEK 418 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG----ATQFIGYDLLRGSKFMKEDRKVL 476 LEEQR R+R G E F+ K Y T F+GYD L Sbjct: 419 YLEEQRERSRK-----AQGEVE---FAQKTGYENLGIETVFVGYDTLVSE---------- 460 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAI 535 SS++K V GE VE+A + E++ D TPFYAE GGQ+ DTG Sbjct: 461 ------------SSVLKIRV-NGEFVEKAEGNDLECELILDITPFYAEKGGQVADTGVIK 507 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ----NRRQLSINHSATH 591 + V EGI VH RG L ++S+ + Q R+ NH+ATH Sbjct: 508 SQDGLFTVEYVYSPVEGIIVH-----RGKLNGKISVNEKVQSQVDEIKRKSTMRNHTATH 562 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH AL +LGSHV Q GS + P LRFD TH + +T E+ IE+ VN++I + +PVVT Sbjct: 563 ILHSALRKVLGSHVRQAGSLVEPTRLRFDFTHYQALTKDEITKIENIVNEVILKAIPVVT 622 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 I + ++A+ GA AL KY D VRVV V S LCGGTHV +TGEI L IV Sbjct: 623 EIKSYDEAVKEGAMALFEEKYGDFVRVVKV-----SDFSEELCGGTHVKNTGEIGLFKIV 677 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 SES++ AG+RRIEAITG + +L +E + L L+ + +V ++++I EE + L Sbjct: 678 SESAVSAGVRRIEAITGLNSLEYLRTDEELFEKLKLLLEAPKSEIVEKIQKILEEKKNLE 737 Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIM 826 ++ KRKL +N E+++ K+ + N + +++S +V+ LK ++D + +I+ GI++ Sbjct: 738 KEIQEIKRKL-INPEEIA-KKVKEYNNIKYVVSVLEDVEPDILKDLIDNISDRIK-GIVL 794 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L+ K V + V ++L +NA ++A+L +KVLGGGGGG P AQ+GG K D Sbjct: 795 LIS-KMSDKIIVTVKVPKELTQDYNAGNIAKLVSKVLGGGGGGS-PTFAQAGGKLIEKID 852 Query: 887 QAIAGVASFLKK 898 +A ++K Sbjct: 853 EATELFEKIIRK 864 >gi|282890190|ref|ZP_06298720.1| hypothetical protein pah_c014o045 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499847|gb|EFB42136.1| hypothetical protein pah_c014o045 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 876 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 361/904 (39%), Positives = 520/904 (57%), Gaps = 48/904 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL +F+++GH ++ SS + P +DP+L+FTN+GM FK++F G+ Y TT QK Sbjct: 6 IRRQFLNYFKEHGHRVISSSPVFPHDDPSLLFTNAGMNQFKDVFLGKSARDYHRATTSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GGKHNDL+NVG T+RH TFFEMLGNFSFG YFK AIQ AWD+ T+ F D + ++ Sbjct: 66 CIRVGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKAEAIQFAWDISTQVFGFDPQHIW 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-PG 185 TV+ +DEEAF+LW + + A KI R DNFWSM E GPCGPCSE+++D+G P Sbjct: 126 PTVFRDDEEAFELWTRY--VPASKITRFGEKDNFWSMGEVGPCGPCSELYYDRGSKYGPA 183 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 P GERY+E WNLVFMQF + LP+ SIDTG G+ER+ + + + Sbjct: 184 NNPSEDVTGERYLEFWNLVFMQFNRLEDGSLSPLPRPSIDTGAGIERVVGLKMGVDSVFG 243 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVN---HRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 D+ + LI +EQV Y+ NI VI DHLR +F IADG+ P+N RGYVLR Sbjct: 244 TDVLRELIAQTEQVFNKSYDPTNIQTAPAFHVIADHLRCLAFAIADGVQPSNVDRGYVLR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 +++RRA+ Y R LG P + +LP L MG Y EL+QA+ I E L E+E F +TL Sbjct: 304 KVLRRAVRYGRSLGMDTPFLADILPRLVATMGEDYKELVQAQQRIAEILTVEEEAFLRTL 363 Query: 363 DRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 RG +L+ ++ ++GD AFKL DT+G PL+ ++ I L ID F Sbjct: 364 RRGGNILNQIIEGAQNTHHRISGDDAFKLKDTYGFPLEEIELIARDANLV-IDKERFELL 422 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 E + R+R + ++ + + AT F+GY+ L Sbjct: 423 ENEAKERSRQVQKTTQQIASTNLFVDFVKTHAATTFLGYEQL------------------ 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIR 540 + V +V + V + ++GQ ++ DQTPFYAE GGQ+GDTG + G+ Sbjct: 465 -----SARATVTGLVVDQQFVNQIIAGQDAMIILDQTPFYAEMGGQIGDTGTIVNHQGMS 519 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 Q+T+ +G+ H + G L+ S+ ++D R+++ NH+ATHLLH AL + Sbjct: 520 FQVTNTISPYQGVIAHVGTLTHGHLKVGDSVEASVDAPRRQKIENNHTATHLLHWALHHV 579 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + P LRFD +H KP+T EL IE+ VN I NLPV T + E+A Sbjct: 580 LGEHVKQAGSVVEPGRLRFDFSHHKPLTKQELNEIENLVNQRIRLNLPVKTYEIAYEEAQ 639 Query: 661 AS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 S G KY +VRVV E+ S LCGGTH S+ G I L I E SI AG Sbjct: 640 KSTDIKQFFGEKYGAKVRVVDAEF------SKELCGGTHTSALGNIGLFRIAKEGSIAAG 693 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777 +RRIEA+TG+ A S ++ + SLA LK + R+E++ EE ++L ++ + K+ Sbjct: 694 VRRIEAVTGEDAESLSRHSEQFIDSLAELLKTQPQKLQERIEKLVEENKQLAQEMKNLKK 753 Query: 778 -KLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVGISKEK 834 K++ V +LS + ++ + II++VD + EL++ ++ LQ K+ SG+I L G+++E Sbjct: 754 GKMEGMVTELS-QQTEVIHHIPTIIAKVDVPAAELRNFLELLQAKMGSGVIAL-GVTEED 811 Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K ++I V++DL+ + NA L + A ++ G GGG+P+MAQ+GG K +A+A Sbjct: 812 KCHLIIRVSDDLVAKGINASQLIKTLAPMI-EGTGGGKPNMAQAGGKAPQKLTEALAKFR 870 Query: 894 SFLK 897 L+ Sbjct: 871 ELLQ 874 >gi|118594479|ref|ZP_01551826.1| alanyl-tRNA synthetase [Methylophilales bacterium HTCC2181] gi|118440257|gb|EAV46884.1| alanyl-tRNA synthetase [Methylophilales bacterium HTCC2181] Length = 872 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 366/907 (40%), Positives = 535/907 (58%), Gaps = 56/907 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ GH ++ SSSL+P DPTL+FTN+GM FK++F G+E+ Y + QK Sbjct: 7 IRAQFLKFFEDKGHHVVSSSSLVPHEDPTLLFTNAGMNQFKDVFLGEEQRNYVRAASSQK 66 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT+ F + + +L Sbjct: 67 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKKEAIHFAWELLTEVFAIPKEKLL 126 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQ 179 +TVY +D EA+ +W+K G+ +KII+I N DNFW M +TGPCGPCSEIF+D Sbjct: 127 VTVYADDNEAYSIWEKDIGIPTEKIIKIGDNKGSQYASDNFWMMGDTGPCGPCSEIFYDH 186 Query: 180 GECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G+ I GG+PGS +E+G+R+IEIWNLVFMQF + +K LPK S+DTGMGLER+ +LQ Sbjct: 187 GDTIEGGVPGSHNEDGDRFIEIWNLVFMQFNRDDKGVMHPLPKPSVDTGMGLERITAILQ 246 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +NYDID+F+ LI + ++T K + +V+ DH+R+++FLI DG+LPANEGRG Sbjct: 247 DVHSNYDIDIFRELIAEAAKLT--KTNNTEHPSLKVLSDHIRATTFLIGDGVLPANEGRG 304 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LG P L+ L MG Y + LIE + E++RF Sbjct: 305 YVLRRIIRRAIRHGYKLGVRAPFFFKLVAPLNLVMGDTYRFSKEQSSLIESEIHLEEKRF 364 Query: 359 GKTLDRGLVLLDGVLSHL-GKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T++ G+ +L+ + L GK++ ++G VAFKL+DT G PLD+ D+ G++ I+ Sbjct: 365 FETIENGMGILEDTIKELVGKNKTAISGKVAFKLHDTFGFPLDLTADVCRENGIS-INSE 423 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ +++Q++ AR K + T F+GYD Sbjct: 424 EFDAEMDKQKTMAR-------EAGNFKAKLQINYSGPDTVFLGYD--------------- 461 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + S+I+ I+ + V +G+ ++ DQTPFYAE+GGQ+GD G Sbjct: 462 --------KSSTSAILLGILTHEQSVASITNGESAMLILDQTPFYAESGGQIGDIGSISS 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + +TD K I+VH + +G L + I++++R+ + NHSATHL+H A Sbjct: 514 EEGVFDVTDTFKIKGNIYVHVGSMIKGKLSINDKIEADINHEHRQHVMRNHSATHLMHKA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG+H+ Q GS + RFD +H KP+T E SIE VN I +N +M+ Sbjct: 574 LKEILGNHIEQKGSLVDSYRTRFDFSHPKPLTYKEKTSIELMVNQEILKNQTTQASVMDI 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A +GA L G KY D+VRV+ + +S LCGGTHV+ TG+I L I SES I Sbjct: 634 DSAKKTGAMMLFGEKYGDKVRVLEIG------NSKELCGGTHVAKTGDIGLFKIQSESGI 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +GIRR+EA TG + Q+ + ++ L V V +V ++ ++ + + I ++ Sbjct: 688 SSGIRRVEATTGLNVIGLIAAQETIIDNVTKELNVGASEVTSKVSQLMKQLKDNEKIISQ 747 Query: 777 RKLQL---NVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K ++ DL I F+ + V++ EL+ ++D L++K QS +I+L G Sbjct: 748 LKSKIAGSEGSDLVGQAIDTGKYQFLGVSVDRVEANELREMIDNLKEKFQSAVIIL-GSH 806 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K S + VT++L A D+A+L + + GG GGGR +MA +GGPN D+AI+ Sbjct: 807 SNNKVSFAVGVTDNLTQEIKAGDIAKLLGEAV-GGKGGGRDNMAMAGGPNIQLIDEAISQ 865 Query: 892 VASFLKK 898 + L K Sbjct: 866 IKDHLIK 872 >gi|257784262|ref|YP_003179479.1| alanyl-tRNA synthetase [Atopobium parvulum DSM 20469] gi|257472769|gb|ACV50888.1| alanyl-tRNA synthetase [Atopobium parvulum DSM 20469] Length = 881 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 363/905 (40%), Positives = 524/905 (57%), Gaps = 58/905 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF+ G + PSSSL+P +DP+L+ N+GM FK + G + T Sbjct: 8 TTAEIREDFLSFFESKGCKRYPSSSLVP-SDPSLLLANAGMNQFKEYYQGIKTMKEIGAT 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QKC+R ND+DN+G + RH +FFEMLGNFSFGGY K A A + ++ + L Sbjct: 67 SCQKCLRT----NDIDNIGDS-RHLSFFEMLGNFSFGGYTKRDACTWAMEFISSPEHLGL 121 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RLY TV+ +D+EA ++WK + G++ D I R+ DNFW+ TGPCGPCSEI+FDQG Sbjct: 122 PLDRLYFTVFTDDDEAIEIWKSL-GITEDHITRLGEEDNFWAAGPTGPCGPCSEIYFDQG 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G PG ++G+RY+E WNLVF QF++Q LP +IDTGMGLER+A ++Q + Sbjct: 181 PEFEGEAPG--DDGDRYLEFWNLVFTQFDRQEDGSLPELPHRNIDTGMGLERIAAIMQHE 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 NY+ D+ + LI E+++G KY + ++ R++ DH R+ +F+I DGILP NEGR Sbjct: 239 GTNYEGDIMRTLISLGEKLSGKKYHSTDEIDRSLRILADHSRAVTFMIGDGILPGNEGRS 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRR++RRA+ + RLLG M + +G+ YPEL++ LI+ L +E+ERF Sbjct: 299 YILRRLLRRAVYHGRLLGIQGTFMAEYAHEVAVLLGAEYPELVEKSALIDGILTAEEERF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 G TLD G L L L L+G+VAF L+DT+G P+D+ ++I G +D+ +F Sbjct: 359 GATLDAGESKLTAELEQLEDGAQLSGEVAFLLHDTYGFPIDLTREIAANAGHV-VDMDAF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + A+ EQR RAR + G + IW +L ++ T F GYD Sbjct: 418 DAAMTEQRERARKSANRDAWGNAQSIWVALSDRLDETVFDGYD----------------- 460 Query: 479 KPPIDLTNGVSSI-VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 N +S + V A+VQ G+ VE A G +VEVV D+TPFYAE GGQ+GDTG G Sbjct: 461 ------NNELSGVRVVALVQDGQEVESATVGSEVEVVLDRTPFYAEMGGQVGDTGRLSGP 514 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G+ + +TD + + G+ H +VE G L S+ TID R + NH+ATHLL AL Sbjct: 515 GLYVHVTDTKHRDGGLESHIGVVEEGTLSIGDSVTATIDAGRRELIRRNHTATHLLDAAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV+Q GS + PD +RFD TH + +T EL IE VN I P+VT+IM+ E Sbjct: 575 KKVLGDHVNQAGSLVAPDRMRFDFTHFEALTKDELDRIEGMVNAEIFAAKPIVTKIMSIE 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DA A+GA AL G KY D VRVVS ED S LCGGTH +T ++ L I+SESS+ Sbjct: 635 DAKAAGAVALFGEKYGDVVRVVSAGTED-TPFSRELCGGTHARNTADLGLFKIISESSVG 693 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 + RRIEA+T A ++ + +L +A+ LKV V RVE++ ++ R A Sbjct: 694 SNSRRIEAVTSMGAIEYVDERLAQLDEVAAALKVRPSAVADRVEQLQQDLRA-----ANH 748 Query: 778 KLQLNVEDLSCHKIAD-------VNFMSHIISEVD---SKELKSVMDALQKKI--QSGII 825 KL+ + +++A+ +N S +I++++ KEL+S D ++ Q Sbjct: 749 KLEAALTGAGSNQVAEALKSAVQLNGYSCVIAKLEGLSGKELRSAWDGIRDASDGQPVAC 808 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++ + + K S+L T+ + F+A D+ + A+ + GG GGG+P MAQ+GG N Sbjct: 809 VIASATADGKVSLLAGATDSAVAAGFSAGDIVKEIAEFV-GGRGGGKPAMAQAGGSNAAG 867 Query: 885 ADQAI 889 D A+ Sbjct: 868 IDAAL 872 >gi|302391203|ref|YP_003827023.1| alanyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501] gi|302203280|gb|ADL11958.1| alanyl-tRNA synthetase [Acetohalobium arabaticum DSM 5501] Length = 875 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 366/899 (40%), Positives = 555/899 (61%), Gaps = 57/899 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL++F+ GH +LPS+ L+P NDP+L++ N+GM PFK F GQ P + T QK Sbjct: 8 IRQKFLDYFESKGHLILPSAPLVPQNDPSLLWINAGMTPFKPYFNGQATPPKTRIVTSQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND+ NVG+T+RHHTFFEMLGNFSFG YFKE AI+ ++D L E +L Q RL+ Sbjct: 68 CIRT----NDIGNVGKTDRHHTFFEMLGNFSFGDYFKEEAIKWSYDFLVNEIELKQDRLW 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 I++Y +DEEAF++WK G+ ++I+R+ ++NFW + TGPCGPCSEI +D G G Sbjct: 124 ISIYKDDEEAFEIWKNKIGIPTERIVRMGKDENFWQIG-TGPCGPCSEIHYDLGAEF--G 180 Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 + + G +RY E+WNLVF Q++ E LP +IDTGMGLER+A+++Q+ +N Sbjct: 181 CSDNCDFGCDCDRYREVWNLVFTQYDYTEDGEYKTLPSKNIDTGMGLERLASIIQQVDSN 240 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ DLF +I+ + T YE ++ + +RVI DH+RS + I DG+LP+NEGRGY++ Sbjct: 241 FETDLFIPIIEFISEHTEYDYESSDEIKSAYRVIADHIRSVTLAIGDGVLPSNEGRGYII 300 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RRA+ YA+ L P + ++P + MG+ Y E+ + I++T++SE+ +F +T Sbjct: 301 RRVLRRAVRYAKKLDLKLPFLHRIVPVVVDIMGNEYTEIADKEEQIKKTIKSEEVKFQET 360 Query: 362 LDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LD+G+V+L+ ++ L + E++ GD F LYDT+G P ++ ++I RG ID F Sbjct: 361 LDQGMVILEELIDELEGEGREVIPGDEVFTLYDTYGFPKELTEEIAQERGYR-IDSEGFE 419 Query: 420 QALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +A+EEQR+RARA + E +++ L+++ +F+GY Sbjct: 420 EAMEEQRARARAAQKDHDWSSAEIELFKELRDEIEMPEFVGY-----------------T 462 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 +P + + +VK I++ E+V+ +G++ +VV +TPFYAE+GGQ+GD G + D Sbjct: 463 QPECE-----TEVVK-IIKDNELVDSLSAGEEGQVVLTKTPFYAESGGQIGDKGALLSDD 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 I + + D Q+KAE + H ++E G L L I R + NH+ATHLLH AL Sbjct: 517 ITVTVVDTQEKAE-LISHQVVIEAGKLSVGDKLTAKIQTDQRIYIRRNHTATHLLHQALR 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV Q+GS +TP+ LRFD TH + ++ ELK IE+ VN +I +NL V E+ Sbjct: 576 DILGEHVDQSGSLVTPERLRFDFTHFEAVSEEELKEIEERVNQVIRKNLEVEVLKTTLEE 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A GAAAL +Y+D VRV+ + G +S LCGGTHV + GEI L I SE I A Sbjct: 636 AKKMGAAALFSEQYDDEVRVIKI-----GDYSLELCGGTHVDAAGEINLFKITSEGGIAA 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAK 776 G+RRIEA+TG+ A +++ Q++ LK A+ LK + VV ++E++ + + L ++ K Sbjct: 691 GVRRIEAVTGKEALNYINQQEDILKEAAAALKANPEEVVEKIEKLQSKIKDLEAEVTKFK 750 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKE 833 KL + D I ++N ++ ++ EV D++ L+++ D +++++ SGII+L E Sbjct: 751 NKLADSQADEVASDIEEINGINVVLEEVEGLDAEGLRTMGDNIKEELDSGIIILASKLGE 810 Query: 834 KKASVLIV--VTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K VL V VT+DL+D +NA + A+V GGGGGGRP MAQ+GG +K D A Sbjct: 811 K---VLFVSLVTDDLVDEGYNAGQIIGEVARV-AGGGGGGRPDMAQAGGSQPDKLDAAF 865 >gi|51893138|ref|YP_075829.1| alanyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863] gi|59798515|sp|Q67MV8|SYA_SYMTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|51856827|dbj|BAD40985.1| alanyl-tRNA synthetase [Symbiobacterium thermophilum IAM 14863] Length = 872 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 364/918 (39%), Positives = 533/918 (58%), Gaps = 81/918 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F++FF+ GH +PSSSL+P NDPTL+FTN+GM FK+ F G EK Y T Sbjct: 4 AEIRQKFIDFFKSKGHVHVPSSSLVPHNDPTLLFTNAGMNQFKDTFLGLEKREYTRAVTA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDLD VG T RHHTFFEMLGNFSFG YFKE A+ AW+ +T L + Sbjct: 64 QKCVRAGGKHNDLDEVGFTARHHTFFEMLGNFSFGDYFKEDALAYAWEFITSPEWLGLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 RL++++Y +DE+AF +W G+ AD+I+R+ DNFW M +TGPCGPCSEIF+D G Sbjct: 124 DRLWVSIYKDDEQAFDVWHNKVGVPADRIVRLGEKDNFWRMGDTGPCGPCSEIFWDMGPE 183 Query: 182 --CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 C P G + +R+ E WN VFMQ+ Q + L + +DTG+GLERMAT++Q Sbjct: 184 YACDHPDGCRIDTCGCDRWREFWNNVFMQY-NQTPEGLVPLERTGVDTGLGLERMATIMQ 242 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+DIDL++ + +++G KYEG V RVI DH R +FLIADG+ +NEG Sbjct: 243 GVWSNWDIDLWQPIFARIHELSGKKYEGEGPEAVAFRVIADHARCCTFLIADGVRFSNEG 302 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYV+RRI+RRA+ + R+LG+ EP + + A+ MG AYPE+ + +I++ LR E+E Sbjct: 303 RGYVMRRILRRAVRFGRVLGFAEPFIWKVAGAVADVMGDAYPEVRERLPVIQDELRREEE 362 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL++G+ L+ +L+ + + + +++G AF LYDT+G PLDI++D+ +G +D Sbjct: 363 RFLRTLEQGMNRLEEILARMRQKGETVISGQDAFVLYDTYGFPLDIVRDVAREQGFT-VD 421 Query: 415 IISFNQA----------------LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 + A + E +SR H G+ T+F+ Sbjct: 422 EQGYQAAMAEQRARARAARDVSYITEVQSRIAGHLEGVAP----------------TRFV 465 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY L G E R V A+ Q A G V +V D+T Sbjct: 466 GYTELAG-----EGR------------------VLAVFDQEGNATGAGEGSSVIIVLDRT 502 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ+GDTG + G+R+++ D +K G +H+ V+ G L + +D + Sbjct: 503 PFYAEGGGQVGDTGQIVAPGLRVEVEDCRKLPSGHHLHYGTVQEGFLEVGQQVEARVDAR 562 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R+ NH+ATHLLH AL +LG+HV Q GS + PD LRFD TH+ P+T ++ ++E+ Sbjct: 563 KRKDTQKNHTATHLLHKALREVLGTHVQQAGSLVAPDRLRFDFTHTGPMTPEQIAAVEEM 622 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 +N I PV M ++A A GA AL G KY + VRVVSV G S LCGG H Sbjct: 623 INAEIEAAEPVTWTEMPLDEARALGAMALFGEKYGEIVRVVSV----GDGWSRELCGGCH 678 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 VS+T E+ I+SES I G+RRIEA+TG HL ++ + +++ +Q + Sbjct: 679 VSNTSEVQYFKILSESGIGGGVRRIEAVTGPGVIRHL--EEAQARAVE-----AQEQLRS 731 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 R++E+ +E +L+ A + VE ++ V ++ ++L+++ DA++ Sbjct: 732 RMKEMEKELEQLRAKLAASQTDSLVE--RAQEVGGVKVVAGTAPVATMEDLRNMTDAIRA 789 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K+ SG+++L ++ E K +++ VT+DL R +A +L R A++ GGGGGGRP MA +G Sbjct: 790 KLGSGVVVLGAVTSEGKVNLVAAVTKDLAGRVHAGNLIREVARIC-GGGGGGRPDMATAG 848 Query: 879 GPNGNKADQAIAGVASFL 896 G N + +A+ V + Sbjct: 849 GKNPERLGEALNAVPGLV 866 >gi|254283834|ref|ZP_04958802.1| alanyl-tRNA synthetase [gamma proteobacterium NOR51-B] gi|219680037|gb|EED36386.1| alanyl-tRNA synthetase [gamma proteobacterium NOR51-B] Length = 865 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 380/889 (42%), Positives = 530/889 (59%), Gaps = 56/889 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL +F+ H + SSSL+P +DPTL+FTN+GM FK F G E Y T+ Sbjct: 3 TAEIREAFLSYFESQQHTRVASSSLVPHDDPTLLFTNAGMNQFKETFLGLEVRDYTRATS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW LT+ L + Sbjct: 63 SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIQFAWTFLTEVLGLPKA 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL+ITV+ D+EA +W G+ +++ R+ DNFW M +TGPCGP SEIF+D G + Sbjct: 123 RLWITVHISDDEAAAIWIDEIGIDPNRLSRL-DEDNFWQMGDTGPCGPSSEIFYDHGADV 181 Query: 184 PGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 PGG PGS ++ +RYIEIWNLVFMQF + LP S+DTGMGLER+A VLQ + Sbjct: 182 PGGPPGSEDDDLDRYIEIWNLVFMQFNRDADGTLHPLPAPSVDTGMGLERIAAVLQGVHS 241 Query: 243 NYDIDLFKHLIQASEQ---VTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+IDLF+ LI A+ VT ++++ + RVI DHLRS FL+ADG+LP NEGRGY Sbjct: 242 NYEIDLFQALIAATAARLGVTDLEHK-----SLRVIADHLRSCCFLVADGVLPGNEGRGY 296 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA+ + LG P L+P L +MG AYPEL ++ I L +E+++F Sbjct: 297 VLRRIIRRAIRHGSKLGADGPFFSALVPELVAQMGDAYPELRDSESRIASALANEEDQFA 356 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TLD GL +LDG L+ L ++ G++ F+LYDT+G P+D+ DI RG +D+ + Sbjct: 357 RTLDNGLSILDGELAAL-SGTVIPGELVFRLYDTYGFPVDLTNDIARERGFT-LDLDGYE 414 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSKFMKEDRKVLCQ 478 A++EQR R++ G + K+ +S G T+F GYD Sbjct: 415 AAMDEQRKRSQ-------EGGSFKVDYSNTVALEGETEFTGYD----------------- 450 Query: 479 KPPIDLTNGVS-SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 +GVS + V A+++ G+ V G VV ++TPFY E+GGQ+GDTG + Sbjct: 451 -------SGVSEATVMALLKDGDAVSTLEEGDDGIVVLNRTPFYGESGGQVGDTGFLSAN 503 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ ++ D KA+G +HH + G L T+ S+ ID R+Q+ +NHSATHLLH AL Sbjct: 504 DVKAEVRDT-TKAQGHHLHHVKILSGTLATDASVRAEIDVSVRQQIRLNHSATHLLHAAL 562 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV+Q GS + LRFD ++ KP++ EL +I D VN+ I N PV T M+ + Sbjct: 563 RQVLGEHVTQKGSLVDSQRLRFDFSNEKPVSKTELSTISDIVNEQIRGNTPVTTENMSMD 622 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A+ +GA AL G KY D VRV+++ + V LCGGTHV TG+I +L IV+ES + Sbjct: 623 AAMDAGAMALFGEKYGDSVRVLTMGNDRFSVE---LCGGTHVERTGDIGVLKIVAESGVA 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG RA + + +L ++ LK VV +V + E R L+ A+ Sbjct: 680 AGVRRIEAVTGARALAAFAAGESQLDAVCEALKTRADTVVDKVTALRSEARDLEKEVARL 739 Query: 778 KLQLNVE---DLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L DL+ + + ++ I D L+ +D + K+ +++L + Sbjct: 740 KQKLASASGGDLTADAVDVGGIKVLAATIDGADVATLRETLDQCKNKLGDAVVLLAAVEG 799 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 E K S++ V++ L + A DL R A L GG GGGRP MAQ GG + Sbjct: 800 E-KISLVAGVSKALTKQVKAGDLMREFAGRL-GGKGGGRPDMAQGGGSD 846 >gi|307265211|ref|ZP_07546770.1| alanyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|326390157|ref|ZP_08211718.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200] gi|306919833|gb|EFN50048.1| alanyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt8.B1] gi|325993805|gb|EGD52236.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 877 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 362/909 (39%), Positives = 547/909 (60%), Gaps = 55/909 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL FF+ GH LPS SLIP ND +L+ NSGM P K FTG+E P + VTT Sbjct: 6 MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R D++ VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L Sbjct: 66 CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEILKLPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y+ED+EAF++W KI GL ++I+R+ DNFW + TGPCGP SEI+FD+GE Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R+IE WNLVF QF + + LP +IDTGMGLER+AT++Q Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDERGNYHRLPNPNIDTGMGLERIATIMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D+ + + ++ ++Y + V+ RVI DH+R +F+I+DGILP+NEGRGY Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG + + ++ ++ G AYPE+I+ K I+ ++ E+ERF Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYKVVDSVIENYGEAYPEIIERKDYIKRIIKLEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D+GL +L +S L GK +L G AFKLYDT+G PLD+ ++IL G+ +D Sbjct: 361 ETIDQGLTILQDYISELKVQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEE 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + + LE+QR RAR+ S + I+ +L + T+F+GYD + D KVL Sbjct: 419 GYTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDT------YESDSKVL 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 AIV+ E+VEEA +G V ++ D TPFYAE+GGQ+GD G Sbjct: 471 -----------------AIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDKGVLEN 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + +++ D +K + F+H +ERG++ + ID +RR + NH+ATHLLH A Sbjct: 514 ENALIKVNDCKKIGDK-FIHTGTIERGLISVGDEVKAQIDVVSRRNAARNHTATHLLHKA 572 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG HV Q GS + D LRFD +H + +T ELK IE+ VN+ I Q+L V Sbjct: 573 LKEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTY 632 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A+ GA AL KY D+VRVV ++ +S LCGGTHV +T EI + IVSES++ Sbjct: 633 DEAVKEGAVALFTEKYGDKVRVVKIDD-----YSMELCGGTHVKNTNEIGIFKIVSESAV 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIH 774 AG+RRIEA+TG A +L ++E LK + LKV ++ ++E + + + + ++ Sbjct: 688 GAGLRRIEALTGLAAIKYLGEKEEILKEASDLLKVQDKEIISKIESLQQVLKTKDKEIEQ 747 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831 K K+ + D + ++ + ++S+V DS+ LK++ D L+ K++ ++L + Sbjct: 748 LKIKMASILADSLINSAISLDGIKVVVSKVEDYDSEALKALGDILKDKLKIAAVVLASST 807 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889 E KA + + T+D++ + +D+ + +V + G GGGRP MAQ G N +K D+A+ Sbjct: 808 PE-KAIFVGMATKDVVQK--GIDMGAIIKEVCKVSEGNGGGRPDMAQGTGKNLSKVDEAL 864 Query: 890 AGVASFLKK 898 +K+ Sbjct: 865 NKAIDIVKE 873 >gi|163781728|ref|ZP_02176728.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] gi|159882948|gb|EDP76452.1| alanyl-tRNA synthetase [Hydrogenivirga sp. 128-5-R1-1] Length = 873 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 358/900 (39%), Positives = 528/900 (58%), Gaps = 50/900 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF++ GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y + QK Sbjct: 8 IRELFLSFFERKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGVEKRPYTRAVSCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFKE AI+ AW+ +T L + +LY Sbjct: 68 CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKESAIEYAWEFVTGTLKLPEEKLY 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++VY +DEEA+++W + G+ +++I ++ DNFW M ETGPCGP SEI+ D+GE G Sbjct: 128 VSVYRDDEEAYRIWSEKVGVPSERIWKLGDEDNFWQMGETGPCGPSSEIYVDRGEEYEG- 186 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 ERY+EIWNLVFMQ+ + K LPK +IDTGMGLER+A+VLQ NY+I Sbjct: 187 -------DERYLEIWNLVFMQYNRDEKGNLTPLPKPNIDTGMGLERVASVLQNTKTNYEI 239 Query: 247 DLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D+ LI+ E V+G +Y + V RVI DHLR+ F I+DG+LP+NEGRGYV+RRI Sbjct: 240 DIIYPLIEFGEGVSGHRYGESPDTDVALRVIADHLRALIFAISDGVLPSNEGRGYVIRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LG EP + + + M YPEL ++ ++ +R E+ERF +TL Sbjct: 300 LRRALRFGYKLGVEEPFLNRGIDLVVDIMKDPYPELDMSREFVKGVVRGEEERFIRTLKA 359 Query: 365 GLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 G+ ++ ++ ++ + L G+ FK YDT+G PLD++ +I RGL IDI F + + Sbjct: 360 GMQAVEELIERAKEEGRDTLKGEEVFKAYDTYGFPLDLIDEIARERGLK-IDIAGFQEEM 418 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 E+QR RAR H + + + ++ LK+ ++F+GY+ Sbjct: 419 EKQRERARKH-FKVETKKVKPVYQHLKDIGKTSEFVGYEHYE------------------ 459 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 + + +V+ E+V E G++ E++ +TPFY E GGQ+GDTG D + Sbjct: 460 -----YETELMGVVKGEELVSELSEGEEAELILRETPFYPERGGQVGDTGVIESDRALFK 514 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D Q +G+ VH + +G LR +V +D + R + NH+ATHLLH AL +LG Sbjct: 515 VEDTQSPVDGVIVHRGKLLKGTLRVGDRVVARVDRERREDIMRNHTATHLLHAALKNLLG 574 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS + LRFD TH + +T ELKSIE+ VN+ I +N+PV M+ + A+ S Sbjct: 575 EHVRQAGSLVADRYLRFDFTHFEALTREELKSIEELVNEKIRENMPVQVNEMDYQSALRS 634 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A+ KY D VRV+S G S LCGGTHVS TG+I I+SESS+ AG+RR Sbjct: 635 GAVAIFEEKYGDTVRVIS-----AGEFSRELCGGTHVSRTGDIGYFKILSESSVGAGVRR 689 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLIHAKRK 778 + A TG+ A + L+ +A L + V+ R+E E+ E+ R++ + + Sbjct: 690 LIAQTGRWAVETAFREHTLLEDVAQSLNAKEEEVLSRLESLKSELKEKEREISRLR-QEL 748 Query: 779 LQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 L+ +E + ++ + V ++EL+++ D L+ K ++ L+ K+ K S Sbjct: 749 LKFQIETSVKREEVGEFTLFWGKFKGVGAEELRNLADMLRHKTGKDVVFLLS-EKDGKLS 807 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 ++ V+++ DR A L + + L GGGGGR +AQ GG N ++A+ + + LK Sbjct: 808 TVVAVSKETTDRVKANQLIKELGRAL-KGGGGGREDLAQGGGSNPGGFEEAVKILRNRLK 866 >gi|20807697|ref|NP_622868.1| alanyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4] gi|22096187|sp|Q8RAH4|SYA_THETN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|20516247|gb|AAM24472.1| Alanyl-tRNA synthetase [Thermoanaerobacter tengcongensis MB4] Length = 878 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 359/907 (39%), Positives = 543/907 (59%), Gaps = 52/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL FF+ GH LPS SL+P ND +L+ NSGM P K FTG+E P + VTT Sbjct: 6 MNEIREKFLSFFESKGHLRLPSFSLVPKNDKSLLLINSGMAPLKPYFTGKETPPSRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R D++ VG+T RH TFFEMLGNFSFG YFK+ AI AW+ + + L Sbjct: 66 CQRCIRT----PDIERVGKTARHATFFEMLGNFSFGDYFKKEAIPWAWEFVAEVLKLPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++T+Y+ED+EAF++W KI GL ++I+R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 122 RLWVTIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180 Query: 184 PGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P ++ +RY+E WNLVF QF + + LP +IDTGMGLER+A ++Q Sbjct: 181 GCGKPDCGIGCDDCDRYVEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIAAIMQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +D+D+ + + + ++Y + + V+ RVI DH+R +F+I+DGILP+NEGRG Sbjct: 241 DTIFDVDVIRGIRDFISDLAEVEYGKDADKDVSIRVITDHIRGITFMISDGILPSNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + +LLG + + ++ ++ G AYPE+I+ K I++ ++ E+ERF Sbjct: 301 YVLRRLLRRAARHGKLLGLNDAFLYKVVDSVVENYGGAYPEIIERKDYIKKIIKLEEERF 360 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 +T+D+GL +L ++ L GK +L G AFKLYDT+G PLD+ ++IL G+ ID Sbjct: 361 KETVDQGLAILQDYINELKAQGKT-VLEGAKAFKLYDTYGFPLDLTKEILQESGIT-IDE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + + LE+QR RAR+ S + I+ +L + +T+F+GY++ + + KV Sbjct: 419 EGYKEELEKQRVRARSSRKEDNSLWEQDIYSTLGDI--STKFVGYEV------YESEAKV 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L AIV+ E+VE+A +G V ++ D TPFYAE+GGQ+GD+G Sbjct: 471 L-----------------AIVKDNEVVEQAEAGDDVSIILDVTPFYAESGGQVGDSGVIE 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + +++ D KK F+H VERG++ +V ID R+ + NH+ATHLLH Sbjct: 514 EEDTLIKVNDC-KKVGNKFIHIGTVERGLISVGDKVVAKIDVSKRKGAARNHTATHLLHK 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV+Q+GS + D LRFD +H + ++ ELK IE+ VN+ I + LPVV N Sbjct: 573 ALKEVLGDHVNQSGSLVAYDRLRFDFSHYQAVSKEELKKIEERVNEKIYEQLPVVVEEKN 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 EDA+ GA AL KY D+VRVV ++ +S LCGGTHV +T EI + IVSES+ Sbjct: 633 YEDALKEGAVALFTEKYGDKVRVVKIDD-----YSMELCGGTHVKNTSEIGIFKIVSESA 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLI 773 + AG+RRIEA+TG A +L Q E L ++ LK + VV ++E + + ++ ++ Sbjct: 688 VGAGLRRIEALTGIEAIKYLNEQKEILDRVSETLKAQEKEVVSKIENLQQSLKDKEREIE 747 Query: 774 HAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K+ + E L S + V ++ + + D + LK++ D L+ +++S ++L Sbjct: 748 GLKTKIASILAETLIDSAISVDGVKVIASRVEDYDMEALKTLGDILKDRLKSAAVILASS 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 SK+ KA + + T+D +++ + + G GGGR MAQ G N +K +A+ Sbjct: 808 SKD-KALFVGMATKDAVEKGVNMGAVIKETCSIAEGNGGGRAEMAQGTGKNISKVKEALE 866 Query: 891 GVASFLK 897 +K Sbjct: 867 KAIEIVK 873 >gi|281416686|ref|ZP_06247706.1| alanyl-tRNA synthetase [Clostridium thermocellum JW20] gi|281408088|gb|EFB38346.1| alanyl-tRNA synthetase [Clostridium thermocellum JW20] Length = 880 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 354/899 (39%), Positives = 558/899 (62%), Gaps = 50/899 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL+FF+ GH LPS SLIP NDP+L+ NSGM P K FTGQE+P + VTT Sbjct: 6 LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH TFFEMLGNFSFG YFK AI AW+ T++ + Sbjct: 66 CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y++D+EAF++W K GL ++I+R+ ++NFW TGPCGPCSEI+FD+GE Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +R+IE+WNLVF QF ++ L +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D + ++ ++TG++Y + V+ RVI DH+RS++ +I+DG++P+NEGRGY Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG P + + + E AYPEL + I++ +R E+E+F Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIEESKGAYPELAERAENIKKVIRIEEEKFE 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D+GLV+L + K +++++GDV F+L+ T+G P+D+ ++I GL G+D Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419 Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + ++E ++ AR + GS + I+ L +K T+F+GY Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKL-DKSVKTEFLGY---------------- 462 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++ V I+++ ++V+EA G+ V V+ D+TPFYAE+GGQ+GD G Sbjct: 463 -------TESEATARVLYIIKEDQVVDEAQKGESVTVILDRTPFYAESGGQVGDKGLIEA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G R+++ D +K +G ++H +E G LR M + TID + R ++ NH+ THLLH A Sbjct: 516 EGARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LGSHV+Q GS + PD LRFD TH +T E+KS+ED VN+ I +++ V R M+ Sbjct: 576 LRNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A GA AL G KY D VRVV + G +S LCGGTH++ T + + IVSES + Sbjct: 636 DEARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 +G+RRIEA+TG+ A H +++ L+ +A LK + + V R+E + E + Q + Sbjct: 691 ASGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQ 750 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + KL + D K ++N + + + + D + L++ D ++ K+ SG+++L G Sbjct: 751 LRSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTG 809 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K S++++ T+D++ + +A ++ + +AKV GGGGGGRP MAQ+GG + +K D+A+ Sbjct: 810 FGGKVSLVVMATKDVVAKGIHAGNIIKEAAKV-AGGGGGGRPDMAQAGGKDVSKIDEAL 867 >gi|291286777|ref|YP_003503593.1| alanyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809] gi|290883937|gb|ADD67637.1| alanyl-tRNA synthetase [Denitrovibrio acetiphilus DSM 12809] Length = 877 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 359/902 (39%), Positives = 519/902 (57%), Gaps = 47/902 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FLE+F ++GHE++ SSSL+P +DPTL+FTN+GM FK+ F G+E Y TT QK Sbjct: 8 IRKKFLEYFAEHGHEIVSSSSLVPHDDPTLLFTNAGMNQFKDTFLGRETRSYTRATTSQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 VRAGGKHNDL+NVG T+RHHTFFEMLGNFSFG YFKE AI+ W+ LTK L +++ Sbjct: 68 VVRAGGKHNDLENVGVTSRHHTFFEMLGNFSFGDYFKEDAIKFGWEFLTKVVGLPAEKMF 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++VY++DEEA ++W+ + GL A I DNFW+M +TGPCGPCSEI DQGE Sbjct: 128 VSVYNDDEEAAQIWRDVIGLDAKDIEYRGEKDNFWAMGDTGPCGPCSEIHIDQGEHTGCQ 187 Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P E +R++E+WNLVFMQ+ + LPK SIDTGMGLER+A+V+Q T+NY Sbjct: 188 SPDCDRNCECDRHLELWNLVFMQYNRSEDGTLTPLPKPSIDTGMGLERVASVVQGVTSNY 247 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 D DLF +I+ + G KY E +N V+ RVI DH R+++FLI DG+LPAN+GRGYVL Sbjct: 248 DTDLFLPIIKYIADLAGKKYGDSEKDN-VSMRVIADHSRAATFLIGDGVLPANDGRGYVL 306 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRIMRRAM + R+LG + + M Y EL K I + + +E++ F +T Sbjct: 307 RRIMRRAMRHGRMLGLEGAFFYKVCGFVVDFMKGHYIELADKKPYIAKVVTNEEQSFSRT 366 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ GL ++D +L + ++G+ FK+YDT G P+D++ DI G +D F Q Sbjct: 367 LNTGLKIIDELLEKNKDSKTISGEDIFKMYDTFGFPVDLLADIAEDNGYV-LDNAGFEQE 425 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + Q+ RA+ G G ++ L ++F+GY+ L Sbjct: 426 MHTQQERAKKSWSGSGEQRVADVYIKLASTL-KSEFVGYEELEAE--------------- 469 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + V++I+K Q E G+ +++ +TPFYAE GGQ GD G D Sbjct: 470 ----SEVAAIIKNDAQS-----ETAEGE-CDIILTKTPFYAEGGGQAGDIGYIKTDTAVF 519 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++T K +G+ E G+++ ++ +D RR NH++TH+LH AL +L Sbjct: 520 KVTGTHKYGDGMIAMRGFTELGVIKMGETVKAQVDKTARRATERNHTSTHILHKALQMVL 579 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV Q GS + P+ LRFD H P+++ E+ IE+ N+ I N + MN +DA+ Sbjct: 580 GDHVRQAGSQVNPERLRFDFNHYAPVSAEEIMRIEEIANEEIQANTALKKTYMNIDDAVN 639 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL G KY ++VRVV + G S LCGG HV TG+I LL + SE+S+ +G+R Sbjct: 640 SGAMALFGEKYGNKVRVVEI-----GDFSKELCGGCHVDRTGDIGLLKVTSEASVASGVR 694 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+TG A + + D K A LK + + R+ E+ + + + K Q+ Sbjct: 695 RIEAVTGMAAVAGMQKLDALAKDGAKLLKTTPDGLYERMVELTDSLKDKEKELKKIADQM 754 Query: 782 NVEDLSCHKIADVNFMSHI------ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 +D + + DV +S I ++ D+ ++ +D + +I SG++ + G + K Sbjct: 755 ASKD-AAGLMDDVKIVSGIKVLAAKLANGDADAMRKFVDTARDRIGSGVV-VAGAVTDDK 812 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 + VT+D + A D+ R AK+ GGGGGGRP MAQ+GG + K D+AIA V Sbjct: 813 VIFVCGVTKDTTGKVKAGDIVREVAKIT-GGGGGGRPDMAQAGGKHPEKLDEAIANVEKI 871 Query: 896 LK 897 ++ Sbjct: 872 VE 873 >gi|149924852|ref|ZP_01913189.1| alanyl-tRNA synthetase [Plesiocystis pacifica SIR-1] gi|149814267|gb|EDM73872.1| alanyl-tRNA synthetase [Plesiocystis pacifica SIR-1] Length = 919 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 360/930 (38%), Positives = 530/930 (56%), Gaps = 51/930 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ +IR+ FL FF++ GH +PSS L+P +DPTL+F N+GMV FK++FTG++K Y Sbjct: 5 ADAHAIRSAFLSFFEERGHAAVPSSPLVPFDDPTLLFVNAGMVQFKDVFTGRDKRDYTRA 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+ Q+C+RAGGKHNDLDNVG T RHHT FEMLGNFSFG YFK AI+ W+ LT+ +L Sbjct: 65 TSAQRCLRAGGKHNDLDNVGFTPRHHTLFEMLGNFSFGDYFKRDAIRWGWEFLTQVLELP 124 Query: 122 QRRLYITVYDE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 +L ++V++ D+EA+ LW +I + ++I +NFW M +TGPCGPCSE Sbjct: 125 AEKLVVSVFNGEGENAPFDQEAYDLWAEI--IPKERIYAFDAKENFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGE--CIP-GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 I +GE P GG PG E ++Y+E+WNLVFMQ+E+ E LP S+DTG G Sbjct: 183 IHIWRGEGGAPPDGGKPGKGPAFEDDKYMELWNLVFMQYEKLASGEMTKLPAPSVDTGAG 242 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVNHRVIVDHLRSSSFLIAD 288 LER+A VL+ NY+ LF ++ + + G+ ++G ++RVI DH R+++FLIAD Sbjct: 243 LERLAAVLEGVETNYETGLFVPIVDKVKALAGVSGHQGEREASYRVIADHARATAFLIAD 302 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P GR YVLRRIMRRA+ +A L+G + + + G AYPEL +A+ +I Sbjct: 303 GVTPDQTGRPYVLRRIMRRAIRHATLVGLEDLFFHEVCDEVVNRFGEAYPELREAREVIA 362 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 ++ E+E F +TL RGL + +L+ L + ++ D A LY + G P+D+ + I Sbjct: 363 GAVKIEEEGFRRTLARGLRRVSKILAGLEAEGSKVFPVDEAADLYTSAGFPIDLTRVIAE 422 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRG 465 L +D + + LE Q+ + G G ++F + + G T F+GY G Sbjct: 423 ENELT-LDEAAVAEKLEAQKG--ESSFAGGGGSKVADVYFDIVNELGQGTAFLGYGATAG 479 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 +K ++ P + G ++ + VE A +GQ VE++FDQ+PFY E+G Sbjct: 480 EATLK---AIVIPAP--EPAEGEPAL------EPTRVESAQAGQAVELIFDQSPFYGESG 528 Query: 526 GQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GQ+GDTG A+ G + +T K G+ VHH + G + VL +D R + Sbjct: 529 GQVGDTGALRAVDGGAVVTVTQTSKPTGGLHVHHGELAGGSIAVGQRFVLEVDVARRDAI 588 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATH+LHHAL +LG HV+Q GS + PD LRFD +H++ +T E + IE VN ++ Sbjct: 589 RRNHSATHMLHHALRKVLGKHVAQKGSLVAPDRLRFDFSHARSVTREETRRIEAEVNAMV 648 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS---VEYEDGGVHSSALCGGTHVS 700 N P T M+ DA +GA L G KY VRVV+ VE E G S LCGGTHV+ Sbjct: 649 LANAPTGTAEMSLADAKQAGAIGLFGEKYGAEVRVVTIGEVETEAGEERSVELCGGTHVA 708 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGR 759 G++ L IV+E + G+RRIEA+TG A + + E + +AS L+ G V+GR Sbjct: 709 RAGDVGLFKIVAEGGVAQGVRRIEAMTGMGAVEWVQERAEVVDQVASDLRARDLGEVLGR 768 Query: 760 VEEIWEEY--RKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELK 810 +E++ EE R ++ KRKL ++ + V + I D K ++ Sbjct: 769 LEKLHEELAARGREIDSLKRKLATGGGGSQASEVVEVEGGGKTVKLTARRIPVADPKIMR 828 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL--GGGGG 868 D L+ ++ SG+++L G ++ KA++L+ T+DL + V +L+A ++ G G Sbjct: 829 EAADTLRDRMGSGVVVLAG-ERDGKANLLVATTKDLA-KGKIVHAGKLAAALVVHVDGRG 886 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGRP MAQ+GGP D +A A L K Sbjct: 887 GGRPDMAQAGGPKVAGLDDVVAHAAEELAK 916 >gi|125975678|ref|YP_001039588.1| alanyl-tRNA synthetase [Clostridium thermocellum ATCC 27405] gi|205830037|sp|A3DKB6|SYA_CLOTH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|125715903|gb|ABN54395.1| alanyl-tRNA synthetase [Clostridium thermocellum ATCC 27405] Length = 880 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 354/899 (39%), Positives = 557/899 (61%), Gaps = 50/899 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL+FF+ GH LPS SLIP NDP+L+ NSGM P K FTGQE+P + VTT Sbjct: 6 LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH TFFEMLGNFSFG YFK AI AW+ T++ + Sbjct: 66 CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y++D+EAF++W K GL ++I+R+ ++NFW TGPCGPCSEI+FD+GE Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +R+IE+WNLVF QF ++ L +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D + ++ ++TG++Y + V+ RVI DH+RS++ +I+DG++P+NEGRGY Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG P + + + E AYPEL + I++ +R E+E+F Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIKESKGAYPELAERAENIKKVIRIEEEKFE 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D+GLV+L + K +++++GDV F+L+ T+G P+D+ ++I GL G+D Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419 Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + ++E ++ AR + GS + I+ L +K T+F+GY Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKL-DKSVKTEFLGY---------------- 462 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++ V I+++ ++V+EA G V V+ D+TPFYAE+GGQ+GD G Sbjct: 463 -------TESEATARVLYIIKEDQVVDEAQKGDSVTVILDRTPFYAESGGQVGDKGLIEA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G R+++ D +K +G ++H +E G LR M + TID + R ++ NH+ THLLH A Sbjct: 516 EGARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LGSHV+Q GS + PD LRFD TH +T E+KS+ED VN+ I +++ V R M+ Sbjct: 576 LRNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A GA AL G KY D VRVV + G +S LCGGTH++ T + + IVSES + Sbjct: 636 DEARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 +G+RRIEA+TG+ A H +++ L+ +A LK + + V R+E + E + Q + Sbjct: 691 ASGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQ 750 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + KL + D K ++N + + + + D + L++ D ++ K+ SG+++L G Sbjct: 751 LRSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTG 809 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K S++++ T+D++ + +A ++ + +AKV GGGGGGRP MAQ+GG + +K D+A+ Sbjct: 810 FGGKVSLVVMATKDVVAKGIHAGNIIKEAAKV-AGGGGGGRPDMAQAGGKDVSKIDEAL 867 >gi|256003587|ref|ZP_05428576.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 2360] gi|255992378|gb|EEU02471.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 2360] gi|316939793|gb|ADU73827.1| alanyl-tRNA synthetase [Clostridium thermocellum DSM 1313] Length = 880 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 354/899 (39%), Positives = 557/899 (61%), Gaps = 50/899 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL+FF+ GH LPS SLIP NDP+L+ NSGM P K FTGQE+P + VTT Sbjct: 6 LNELRERFLKFFESKGHLRLPSFSLIPQNDPSLLLINSGMAPLKPYFTGQEEPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH TFFEMLGNFSFG YFK AI AW+ T++ + Sbjct: 66 CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKNEAIPWAWEFFTEDLKIPVE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y++D+EAF++W K GL ++I+R+ ++NFW TGPCGPCSEI+FD+GE Sbjct: 122 RLWVSIYEDDDEAFEIWNKKVGLPPERIVRMGKDNNFWEHG-TGPCGPCSEIYFDRGEDK 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +R+IE+WNLVF QF ++ L +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPDCKVGCDCDRFIEVWNLVFTQFNKEEDGSYSRLKNPNIDTGMGLERLACVMQDVN 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D + ++ ++TG++Y + V+ RVI DH+RS++ +I+DG++P+NEGRGY Sbjct: 241 NLFEVDTIRRVLDYICKITGVEYGSSEKTDVSIRVITDHIRSTTMMISDGVIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG P + + + E AYPEL + I++ +R E+E+F Sbjct: 301 VLRRLLRRAARHGKLLGMDRPFLSDVASVVIEESKGAYPELAERAENIKKVIRIEEEKFE 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D+GLV+L + K +++++GDV F+L+ T+G P+D+ ++I GL G+D Sbjct: 361 ETIDQGLVILSKYIEETRKKGEKVISGDVVFELHGTYGFPVDLTREIAEENGL-GVDEEG 419 Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + ++E ++ AR + GS + I+ L +K T+F+GY Sbjct: 420 FREKMKEHQNLAREDYQSKQGSAWGDDIYSKL-DKSVKTEFLGY---------------- 462 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++ V I+++ ++V+EA G V V+ D+TPFYAE+GGQ+GD G Sbjct: 463 -------TESEATARVLYIIKEDQVVDEAQKGDSVTVILDRTPFYAESGGQVGDKGLIEA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G R+++ D +K +G ++H +E G LR M + TID + R ++ NH+ THLLH A Sbjct: 516 EGARVKVLDCKKTNDGKYLHIGEIEEGTLRNGMEVKATIDKKRRMAIARNHTTTHLLHKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LGSHV+Q GS + PD LRFD TH +T E+KS+ED VN+ I +++ V R M+ Sbjct: 576 LRNVLGSHVNQAGSLVEPDRLRFDFTHFSAMTPEEIKSVEDQVNEKILESIAVDIREMSI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A GA AL G KY D VRVV + G +S LCGGTH++ T + + IVSES + Sbjct: 636 DEARKMGATALFGEKYGDVVRVVKI-----GDYSIELCGGTHLNVTSQAGFIKIVSESGV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 +G+RRIEA+TG+ A H +++ L+ +A LK + + V R+E + E + Q + Sbjct: 691 ASGVRRIEALTGEAALKHFDEEEKLLRDIAQVLKTNPSDSVKRIESLLNEIKAAQKEIEQ 750 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + KL + D K ++N + + + + D + L++ D ++ K+ SG+++L G Sbjct: 751 LRSKLVSSSLDDVLAKAVEINGVKVVTARFDQFDMEALRNTGDTIRNKLGSGVVVL-GTG 809 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K S++++ T+D++ + +A ++ + +AKV GGGGGGRP MAQ+GG + +K D+A+ Sbjct: 810 FGGKVSLVVMATKDVVAKGIHAGNIIKEAAKV-AGGGGGGRPDMAQAGGKDVSKIDEAL 867 >gi|224372192|ref|YP_002606564.1| alanyl-tRNA synthetase [Nautilia profundicola AmH] gi|223588444|gb|ACM92180.1| alanyl-tRNA synthetase [Nautilia profundicola AmH] Length = 853 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 366/912 (40%), Positives = 543/912 (59%), Gaps = 81/912 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64 IR FLEFF+ GH++ PS+ L+P +DPTL+FTN+GMVPFK IFTG EKP + + Sbjct: 3 IRKKFLEFFESKGHKVYPSAPLVP-DDPTLLFTNAGMVPFKPIFTG-EKPAPEPPRACSS 60 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+RAGGKHNDL+NVG TNRHHT FEMLGNFSFG YFKE AI AW+ +T+ +L + + Sbjct: 61 QLCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFGDYFKEEAIAYAWEFVTEVLELPKEK 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180 L+IT+++ D+EA K+W+K + ++I+++ DNFW M +TGPCGPCSEI FDQG Sbjct: 121 LWITIHESDDEAGKIWEKY--VPKERIVKMGDKDNFWQMGDTGPCGPCSEIHFDQGADKF 178 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E GG +G+R++EIWNLVFMQ+ + + LPK SIDTGMGLER+ + Sbjct: 179 NSPEDYLGG------DGDRFLEIWNLVFMQYNRDESGKLTPLPKPSIDTGMGLERITAIK 232 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296 + T+NYD +F+ L++ ++TG +Y + +HRVI DH+R+ +FL A G+ + EG Sbjct: 233 EGVTSNYDSSIFRPLLEKIVEITGKEYHTDKRGASHRVIADHIRAVTFLTAQGVQFSREG 292 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RR + + LLG EP M ++ L +MG YP L++ K +++T++ E+E Sbjct: 293 RGYVLRRILRRGVRHGYLLGMREPFMYKIVDTLAEQMGEQYPYLLEKKESVKDTIKLEEE 352 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF +T+D+G+ L + L D +G+VAFKLYDT+G PLD+ QD+L +D+ Sbjct: 353 RFFETIDKGMQLFEEELKKTTGD-TFSGEVAFKLYDTYGFPLDLTQDMLREVN-KQVDMK 410 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 +FN ++EQ+ RARA+ G G KI EK +F+GY+ Sbjct: 411 TFNALMQEQKDRARANWKGSGD---VKINLKDLEKVENNKFVGYEHTE------------ 455 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---- 532 + VKA+ + + E ++G V+ ++TPFYAE+GGQ+GD G Sbjct: 456 -----------YKTKVKALFDENMNMVETLNGSGW-VMLEETPFYAESGGQVGDKGELRT 503 Query: 533 --CAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 + +R+ ++ D +K + + + V L+T +V +D +NR +++ NH+ Sbjct: 504 YPTSQNGELRIVAKVVDTKKFDDK---NLSKVVEAELKTGDEVVAKVD-ENRSEIAKNHT 559 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + + LRFD TH K +T EL+SIE+ VN +IA+++P Sbjct: 560 ATHLLHAALRKVLGEHVTQAGSLVEANRLRFDFTHPKALTKEELESIEEMVNRVIAKSIP 619 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + M+ ++A GA AL G KY D VRVV G S LCGGTHV++T E+ Sbjct: 620 AEVKEMSIDEAKKMGAMALFGEKYGDVVRVVKF-----GDFSVELCGGTHVNNTAEVNSF 674 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 YI+ ES + AG+RRIEA+ G A + G + ++ + S K ++ VE+ EE + Sbjct: 675 YIIKESGVSAGVRRIEAVAGFGAYRYAKGFRDLVEEIKSENKAK--DLKAFVEKQKEEIK 732 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKIQSGIIM 826 KL K +++ +E + +I VN ++++I +D+ L+ + L+ ++ + + Sbjct: 733 KL-----KTEIK-ELEKAAVKEIKPVNKDGINYVIERIDNANLREIATDLKGRVDNLVAF 786 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L G E K V +V +D A DL + A ++ GG GGG+P AQ GG + K D Sbjct: 787 LAG---ENKGKVTLVAV-STVDSVKAGDLIKNYAPIV-GGKGGGKPDFAQGGGKDSGKID 841 Query: 887 QAIAGVASFLKK 898 + IA V L K Sbjct: 842 EMIAQVKKDLIK 853 >gi|164688540|ref|ZP_02212568.1| hypothetical protein CLOBAR_02185 [Clostridium bartlettii DSM 16795] gi|164602953|gb|EDQ96418.1| hypothetical protein CLOBAR_02185 [Clostridium bartlettii DSM 16795] Length = 879 Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust. Identities = 356/907 (39%), Positives = 545/907 (60%), Gaps = 52/907 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +F +FF+ GH + SSSLIP ND +L+ NSGM P KN F+G E P ++TV Sbjct: 7 NEIRKSFTDFFESKGHYIGKSSSLIPKNDKSLLLINSGMAPLKNYFSGVEVPPKNRMSTV 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T RH TFFEM+GNFSFG YFKE AI+ AW+ +TK ++ + + Sbjct: 67 QKCIRTG----DIENVGKTARHGTFFEMMGNFSFGDYFKEDAIKWAWEFVTKHLEIPEDK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 ++ TVY D+EA LW K S + ++I+R+ +DNFW + GPCGPCSE+++D+GE Sbjct: 123 IWATVYLNDDEAHDLWLKYSSIPEERIVRLGKDDNFWEIG-LGPCGPCSELYYDRGEQYG 181 Query: 182 CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 C P PG + +RY+E WNLVF QF++Q L +IDTGMGLER+ ++Q+ Sbjct: 182 CDNPDCKPGC--DCDRYLEFWNLVFTQFDRQEDGSYPELAHKNIDTGMGLERIGCIMQDV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N +++D + +I E+V+G+KY + + V+ R+I DH+R+ SF+IADGILP+NEGRG Sbjct: 240 DNIFEVDTIRAIIDEIERVSGVKYGVDAKSDVSIRIITDHIRAMSFMIADGILPSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + +LLG E + +L + G AYPEL++ + I++ ++ E+E+F Sbjct: 300 YVLRRLLRRAARHGKLLGIKEDYLYNLFDVVKEVSGEAYPELVEKEGYIKKVIKIEEEKF 359 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D+G +L+G + L + L G+ FKLYDT+G P+D+ Q+IL G +D Sbjct: 360 NETIDQGSEILNGYIEELKANNESTLAGEKVFKLYDTYGFPMDLTQEILEEVGF-DLDEE 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN +++QR RAR+ + + ++ S + A+ F GY L Sbjct: 419 GFNTEMDKQRERARSARGNMEGESWKEDPLSTLDSSVASTFCGYKHL------------- 465 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + +V AIV+ EIV+ G K +V D+T FYAE GGQ+GD+G Sbjct: 466 ----------STTGVVNAIVKDDEIVDSITEGDKAIIVLDRTTFYAEGGGQVGDSGILEN 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++ +K A H IV++G + T+ L ++ + R + NHSATHLLH A Sbjct: 516 ENAVFEVITTKKGANNTIKHIGIVKKGSINTKDELKSLVNREIRMASARNHSATHLLHKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LG HV+Q GS +TP+ LRFD+TH +PI+ EL +E VND+I Q+L + +M Sbjct: 576 LKETLGEHVNQAGSLVTPERLRFDITHFEPISKEELDIVERKVNDVILQSLDIDCEVMGI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +A GA AL G KY + VRVVS+ G +S LCGGTH+++T ++ L I+SE + Sbjct: 636 NEAKEKGAMALFGEKYGNEVRVVSM-----GDYSIELCGGTHLNNTSQVGLFKILSEGGV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RRIEAITG+ +L +DE ++ + LK + N+V RV + EE + L +L Sbjct: 691 AAGVRRIEAITGRSVYEYLNNRDELIEETCNALKTKEDNLVHRVNALVEENKSLTKELHD 750 Query: 775 AKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K K+ L D S ++ VN ++ ++D LK + D L+ K+QSG++ + +S Sbjct: 751 VKAKMSLQSADKLMDSKVEVNGVNLVTAKFEDMDMNSLKEMADNLRDKLQSGVVAISNVS 810 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K + ++ T+D++DR ++ ++ + + GG GGGRP+MAQ+G + K D+A++ Sbjct: 811 -DSKVNFVVTATKDVIDRGIHSGNIVK-EIAKIAGGKGGGRPNMAQAGATDATKIDEALS 868 Query: 891 GVASFLK 897 +K Sbjct: 869 YACEVIK 875 >gi|226311489|ref|YP_002771383.1| alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599] gi|226094437|dbj|BAH42879.1| alanyl-tRNA synthetase [Brevibacillus brevis NBRC 100599] Length = 882 Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust. Identities = 377/913 (41%), Positives = 537/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF + GH + PS+ L+P +DP+L++ NSG+ K F G+ P +T Sbjct: 7 NQIRQMFLDFFVEKGHRIEPSAPLVPIDDPSLLWINSGVATLKKYFDGRIIPDNPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVGRT RHHTFFEMLGNFS G YFKE AI+ AW+ LT K D Sbjct: 67 QKSIRT----NDIENVGRTARHHTFFEMLGNFSIGEYFKEEAIEWAWEFLTSPKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF+LW K G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFELWNKKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E ERY+EIWNLVF QF LPK +IDTGMGLERM +V+ Sbjct: 180 F-GNDPSDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMTSVI 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 Q NN++ DL LI+ + +++G+KY+ + V +VI DH R+ F I DG LP+NE Sbjct: 239 QGVDNNFETDLLFPLIEKTTEISGVKYKTSPEMDVALKVIADHARTVVFAIGDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYV+RR++RRA+ + LG +P + L + T MG YPE++Q + IE+ +R+E+ Sbjct: 299 GRGYVIRRLLRRAVRMGKKLGVEKPFLYSLTETVGTMMGEFYPEVVQKRAFIEKVIRAEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ERF +TL+ GL +L ++ GK ++ DV FK+YDT+G P+D+ +D +GL Sbjct: 359 ERFHETLNDGLAILSDMVKAAKDSGKTQLSGQDV-FKMYDTYGFPVDLTEDFADEQGLT- 416 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F++A+EEQR RARA + S + L + +QF+GY L + Sbjct: 417 VDRDGFDKAMEEQRERARAARQDVDSMQIQG--GPLSDLTVTSQFVGYTELVAT------ 468 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V+AI+ ++VEEA GQ V+VV QTPFYAE+GGQ+ D G Sbjct: 469 -----------------GKVEAIILDNQLVEEAEEGQTVQVVLSQTPFYAESGGQINDEG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 I D ++ ++TDVQK G VH IVE G LR + ++ + R ++ NH+ATHL Sbjct: 512 FLISDIVKARVTDVQKGPMGQNVHSVIVEAGTLRKGDDVRAEVNREARLAITQNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS + P+ LRFD TH IT EL+ IE VN+ + NL V Sbjct: 572 LHQALKDVLGTHVNQAGSLVAPERLRFDFTHISSITPEELERIEAIVNEKVWANLGVEIS 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +A A GA AL G KY D VRVV V G +S LCGG HV++T EI L +VS Sbjct: 632 NKPLAEAKAMGAMALFGEKYGDVVRVVKV-----GEYSLELCGGCHVNNTAEIGLFKLVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQ 771 ES I AG RRIEA+TG+ A L Q LK +A LK RVE + ++ +++Q Sbjct: 687 ESGIGAGTRRIEAVTGRGAYQFLNQQFTTLKEVAQALKAPVLAEAPARVEGLQQQLKEVQ 746 Query: 772 LIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + +L N+E S ++ +N ++ +S VD L+ ++D L+ K+ S +I+ Sbjct: 747 RENESLRAKLGNIEAASLTDKLQQVDGMNVLAARVSAVDMDNLRGMVDELKNKLGSAVIV 806 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNK 884 L + + K +++ VT+DL+D+ + ++ +V GGGGGGRP MAQ+GG + +K Sbjct: 807 LGAVDGD-KVNLVAGVTKDLMDQ--GIHAGKIIKEVATRCGGGGGGRPDMAQAGGKDPSK 863 Query: 885 ADQAIAGVASFLK 897 +A+ V F+K Sbjct: 864 LQEALDAVVDFVK 876 >gi|304407565|ref|ZP_07389217.1| alanyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9] gi|304343516|gb|EFM09358.1| alanyl-tRNA synthetase [Paenibacillus curdlanolyticus YK9] Length = 877 Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust. Identities = 370/910 (40%), Positives = 530/910 (58%), Gaps = 75/910 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ +L FF+ GH + PS+SL+P NDP+L++ N+GM P K F G+ P +T Sbjct: 4 SEIRSKWLAFFESKGHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVIPDNPRITNS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT + D Sbjct: 64 QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKQWIGFDP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 RL +TVY ED EAF+ W K GL ++I ++ ++NFW + E GPCGPC+EIF+D+G Sbjct: 120 SRLSVTVYPEDTEAFEFWNKKIGLPEERIYKL--DENFWDIGE-GPCGPCTEIFYDRGDK 176 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EC PGG E ER++E+WNLVF QF LP +IDTG GLER Sbjct: 177 YGDLNDPECWPGG------ENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERF 230 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADG 289 A++LQ+ +N+D DLF+ +I + ++ + Y N +H +VI DH+R+ +F + DG Sbjct: 231 ASILQDVDSNFDTDLFRPMIDRTCEIANVSYHVN--ADHDLALKVIADHIRTVAFAVGDG 288 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 +LP+NEGRGYV+RR++RRA+ Y + LG P + L + MG YPE+++ + IE Sbjct: 289 VLPSNEGRGYVIRRLLRRAVRYGKSLGIDRPFLFELTKVVGDVMGMYYPEVVEKREFIER 348 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +R+E+ERF +TL GL LL ++S + GK+EI +G+ AF+LYDT+G P D+ +D Sbjct: 349 VIRTEEERFHETLSDGLTLLGALVSQVREAGKNEI-SGEDAFRLYDTYGFPFDLTEDYAS 407 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRG 465 GL +D F+ A+E QR RARA G + S L EK ++F+GY L Sbjct: 408 ENGLT-VDRAGFDSAMEAQRERARAARQETGGMNVQGGPLSELTEK---SEFVGYSELT- 462 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 +S + AIV + +V+ A G +V V+ D+TPFYAE+G Sbjct: 463 ----------------------TNSKITAIVHEDSLVDIAGEGSRVLVLLDRTPFYAESG 500 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G GDG L + DV K +G VHHAIV G +R S ++ R + Sbjct: 501 GQIGDRGVIQGDGFVLNVEDVTKAPQGQPVHHAIVASGTVRVGESAQASVARDLREDIVK 560 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG HV+Q GS + D LRFD +H IT EL IE VN+ I Sbjct: 561 NHTATHLLHKALKEVLGEHVNQAGSLVKSDSLRFDFSHFGAITEEELADIERRVNEQIWI 620 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 PVV +A A GA AL G KY D VRVV V G +S LCGG HV++T +I Sbjct: 621 GTPVVIESKAIAEAKAMGAMALFGEKYGDVVRVVQV-----GGYSIELCGGCHVANTSQI 675 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 ++ ES I +G+RRIEA+TG+ A +++ Q + LK A LK + +V R+E ++ Sbjct: 676 GTFKLIGESGIGSGVRRIEAVTGRHAYAYMEAQFDLLKQAAGLLKSNTADVPKRIEALFG 735 Query: 766 EYRKL----QLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + ++L + + AK +++ + DV ++ +S L+ ++D L+ K+ Sbjct: 736 QVKELGRDNESLQAKLSRIEAGSLTDQAKTVGDVTILTAAVSAPSMDALRGIVDELKAKL 795 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S II+L G +++ K +++ V+ D + + FNA L + +A V GGGGGGRP MAQ+GG Sbjct: 796 PSAIIVL-GAAQDDKVNLVASVSPDFVKKGFNAGKLVKEAAAVC-GGGGGGRPDMAQAGG 853 Query: 880 PNGNKADQAI 889 + +K A+ Sbjct: 854 KDASKLADAL 863 >gi|317128237|ref|YP_004094519.1| alanyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522] gi|315473185|gb|ADU29788.1| alanyl-tRNA synthetase [Bacillus cellulosilyticus DSM 2522] Length = 878 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 369/924 (39%), Positives = 553/924 (59%), Gaps = 74/924 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+FF++ GH++ PS+SL+P DPTL++ NSG+ K F G+ P Sbjct: 1 MKKLSSAEVRQMYLDFFKEKGHDVEPSASLVPHEDPTLLWINSGVATLKKYFDGRVIPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT E Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAILWAWEFLTSEK 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +L +T+Y +D+EAF+LW K GL +IIR+ +NFW + E GPCGP +EIF Sbjct: 117 WIGFDPEKLSVTIYPDDDEAFELWNKEIGLPESRIIRL--EENFWDIGE-GPCGPNTEIF 173 Query: 177 FDQGECI------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 +D+GE P PG E ERY+EIWNLVF QF LPK +IDTGMGL Sbjct: 174 YDRGEAYGNDHNDPELYPGG--ENERYLEIWNLVFSQFNHNADGSYMPLPKKNIDTGMGL 231 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIA 287 ERM +V+Q+ N+D DLF +I +E ++G Y G N V+ +VI DH+R+ +F I Sbjct: 232 ERMVSVIQDAKTNFDTDLFLPIIHETENISGSNY-GKNAVDDTAFKVIADHIRTVTFAIG 290 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG LP+NEGRGYVLRR++RRA+ YA+ + P M L+P + + M YPE+ + + I Sbjct: 291 DGALPSNEGRGYVLRRLLRRAVRYAKQIHIERPFMYELVPVVGSVMKEFYPEVTEKEAFI 350 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 ++ +++E+ERF +TL+ GL +L V+ + E+++G F+LYDT+G P+D+ ++ + Sbjct: 351 QKVIKNEEERFHETLNEGLAILTKVIEKAKGENKEVIDGVDVFRLYDTYGFPVDLTEEYV 410 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLR 464 G + +D F +++QR RARA GS T ++I ++KE+ ++F+GYDLL Sbjct: 411 LEAGFS-VDRDGFESEMKKQRERARAARQDAGSMQTQDEILGNIKEE---SEFVGYDLLE 466 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + ++V IV+ V EA G+KV+V+ D+TPFYAE+ Sbjct: 467 -----------------------IPAVVSVIVKDKAFVNEAKQGEKVQVITDRTPFYAES 503 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G + + L + +V+K G +H V +G L M+ +D QNR+ + Sbjct: 504 GGQIADKGSFENENVTLAVLEVKKAPNGQNLHTVEVIKGTLTKNMTFAAKVDAQNRKGVI 563 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV+Q GS + D LRFD +H I+ EL+ IE VN+ + Sbjct: 564 KNHTATHLLHQALKDVLGGHVNQAGSLVAQDRLRFDFSHFGQISEDELEKIESIVNEKVW 623 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V T + +A GA AL G KY D VRVV V G +S LCGG HVS++ E Sbjct: 624 DGIEVQTMYKSLTEAKEMGAMALFGEKYGDTVRVVRV-----GDYSLELCGGCHVSNSAE 678 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L IVSE I AG+RRIEA+T + A + GQ + LK A LK +V R+E++ Sbjct: 679 IGLFKIVSEGGIGAGVRRIEAVTAKNAYQFMNGQLDVLKESAHLLKAKLNDVPFRIEQLQ 738 Query: 765 EEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDA 815 +++++L+ + +L NV D ++ +V+ +S ++ +V D L+ + D+ Sbjct: 739 QQFKELERENESFAAKLSQVEAGNVMD----ELKEVDGISILVKKVNVPDMNRLRQMADS 794 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 L++KI+SGI++L ++ + K +++ V++DL+ ++A ++ + A GGGGGGRP M Sbjct: 795 LKEKIESGILVLAAVNND-KVNIITSVSKDLVKEGYHAGNIVKEVA-TRCGGGGGGRPDM 852 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ+GG + +K D+A+ V LK+ Sbjct: 853 AQAGGKDPSKLDEALKIVPDLLKR 876 >gi|302327820|gb|ADL27021.1| alanine--tRNA ligase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 882 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 355/910 (39%), Positives = 523/910 (57%), Gaps = 57/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +F++FF+ GH + SS ++P +DPTLMFTN+GM FK IF G ++ Sbjct: 8 AQVRESFIKFFESKGHLFVRSSPVVPHDDPTLMFTNAGMNQFKAIFLGDNPKGWKRACNS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDLD VGR N HHTFFEMLGN+SFG Y+K+ AI AW+LLT+ + L + R Sbjct: 68 QKCLRVSGKHNDLDVVGRDNYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKLPKER 127 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180 L+ TVY +D+EA+++WK +SGL D+I+R + NFW M +TGPCGPCSEI +D+G Sbjct: 128 LFATVYQDDDEAWQIWKDVSGLPDDRIMRFDAHSNFWEMGDTGPCGPCSEIHYDRGDLAT 187 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + E +RYIEIWN VFMQ+E+ + L ++DTGMG ER+ +LQ Sbjct: 188 QAETFKDPIKGVNGENDRYIEIWNNVFMQYERVSDGSLIPLKAKNVDTGMGFERICAILQ 247 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 KT+NYD D+F +I +++G+ Y +G HRVI DH+R+ SF IADG LP+NEGR Sbjct: 248 GKTSNYDTDVFTPIIAKIAELSGVPYNDGEAGTPHRVIADHIRAISFAIADGALPSNEGR 307 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA +ARLLG +P + L+ L MG A+PE+ + K + ++SE+E Sbjct: 308 GYVLRRILRRASRFARLLGQKKPFICQLVQVLADTMGDAFPEIRERKEFVASVIKSEEES 367 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F +TLD GL + + L K + + GD F LYDT+G P D+ + +GL ID Sbjct: 368 FIRTLDAGLERFAAISAELKKGDKIPGDKVFLLYDTYGFPPDLTGILAEEKGLL-IDEEG 426 Query: 418 FNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + + + EQ+ RARA+ G+ + TE W E +T F+GY+L Sbjct: 427 YEKCMNEQKERARANMKQGINTMGTEG-WTQYSE--ASTNFVGYEL------------SA 471 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 C+ + +V+ +G + +V + +PFYAE GGQ+GD G + Sbjct: 472 CE----------TKVVRWREDKGVL----------SIVLETSPFYAEMGGQVGDKGTLVS 511 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL--TIDYQNRRQLSINHSATHLLH 594 + +Q+ D K + +V+ M V T+D R + NHSATHLL Sbjct: 512 ADLEIQVFDTVKVNDTALCRGKVVKGEANEKTMGAVFMATVDNDRRADIRKNHSATHLLQ 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS ++ + LRFD +H +T+ E++ +ED VN I + LPV T +M Sbjct: 572 AALREVLGTHVQQQGSFVSNELLRFDFSHFNAMTAEEIQKVEDIVNAKIMECLPVHTDVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-SSALCGGTHVSSTGEIMLLYIVSE 713 + ++A ASGA AL G KY D+VRVV + D GV S LCGG HV +TG I ++ IVSE Sbjct: 632 DVDEAKASGAMALFGEKYGDKVRVVKM--GDAGVEFSRELCGGLHVQNTGNIGMVKIVSE 689 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 SS+ AG+RRIEA++G+ A S L + L +L L+ V+ R+++ + + + L+ Sbjct: 690 SSVSAGVRRIEAVSGRGALSLLRAGTQILNALREQLRCKDAEVLDRIQQTFAKTQNLEKS 749 Query: 772 LIHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K +L + + VN +S D K K+++D +Q K+ + ++ Sbjct: 750 LQFVKLELATLAAAELLNGGINVMGVNLFVRELSLPDEK-YKNLLDGVQNKLDVDSVAVI 808 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S+ ++V +++ + A D+ R AK G GGGRP AQ+G K + Sbjct: 809 ANKDNGSGSIAVMVGKNVQAKGIKAGDIVRDLAKAC-NGKGGGRPDRAQAGTREPEKIAE 867 Query: 888 AIAGVASFLK 897 AIA ++++ Sbjct: 868 AIANANNWIR 877 >gi|290953862|ref|ZP_06558483.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica URFT1] gi|295312765|ref|ZP_06803502.1| alanyl-tRNA synthetase [Francisella tularensis subsp. holarctica URFT1] Length = 804 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 359/839 (42%), Positives = 504/839 (60%), Gaps = 47/839 (5%) Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 TVQKC+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ LTKE L Sbjct: 2 TVQKCLRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAISFAWEFLTKEIKLPV 61 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L++T+Y D+EAF +W K GL+ ++IIRI ++DNFWSM +TGPCGPC+EIF+D GE Sbjct: 62 EKLWVTIYASDDEAFDVWHKHIGLAKERIIRIDSSDNFWSMGDTGPCGPCTEIFYDHGED 121 Query: 183 IPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + GGLPG+ E+ G+RYIEIWN+VFMQ+ + LPK S+DTGMGLER++ VLQ Sbjct: 122 VAGGLPGTPEQDGDRYIEIWNIVFMQYNRHADGSTTDLPKPSVDTGMGLERISAVLQNVH 181 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +NY+IDLF+ LI+ ++QVT K N + +VI DH+R+ +FLIADG+LPANEGRGYVL Sbjct: 182 SNYEIDLFQALIKKAQQVTHAK--DINSPSLKVIADHIRACAFLIADGVLPANEGRGYVL 239 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + +G E L+ L ++MG AY +LI + LIE+TL E+E F KT Sbjct: 240 RRIIRRAIRHGNKVGAKEIFFYKLVAELVSQMGEAYSQLIDKRELIEKTLIKEEELFLKT 299 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 ++ G+ + D + +L KD ++G+VAFKLYDT+G P D+ D+ +GL +D +F Sbjct: 300 IENGIKIFDAEIENL-KDNTISGEVAFKLYDTYGFPFDLTADMAREKGLK-VDEQAFLAQ 357 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++ Q+ R++ +G + SL ++F GY L ED KVL Sbjct: 358 MQIQKQRSKE------AGKFNVDYNSLINSQVKSEFRGYSTLI------EDAKVL----- 400 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 I Q G++V VV D+TPFYAE+GGQ+GD G G G Sbjct: 401 ------------EIYQDGQLVASTSEQVSAVVVLDKTPFYAESGGQVGDKGILEGVGFEF 448 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + DVQK E I +H + +G L L + + R + NHSATHLL+ AL +L Sbjct: 449 VVEDVQKSGEAI-LHIGKLVKGRLNLNDELTARVSDKPRLATAANHSATHLLYKALKLVL 507 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G H Q GS + + LRFD TH K I+ +E++ IE VN I N PV T +++ A + Sbjct: 508 GGHAEQKGSLVDENRLRFDFTHDKAISRSEIEQIELLVNQQIRANYPVTTIETSQQKAKS 567 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL G KY D VRV+S+ G S LCGGTHV+ TG+I L + SE SI +G+R Sbjct: 568 LGAEALFGEKYGDIVRVISM-----GDFSIELCGGTHVAYTGDIGLFKVTSEGSIASGVR 622 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+T +A H + K+ ++ LK + N++ +++ + E+ + + AK K +L Sbjct: 623 RIEAVTADKAIRHTFTNENKIIAIKDSLKANDTNLIDKIKSMLEQIKNQEKQIAKLKKEL 682 Query: 782 ---NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + D+ I D+ + + VD K L++ +D + K + +I ++ + K Sbjct: 683 LSGSSNDIKETSIGDIKIVVANVDGVDVKTLRNKIDDYKSK-NTKVIAVLTTTNADKVQF 741 Query: 839 LIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I V+ L A D+A+ LS+ + G GGGR MAQ GG N DQA++ V F+ Sbjct: 742 VIGVSNALTTLIKAGDIAKELSSHI--DGKGGGRADMAQGGGNNSANIDQALSQVEKFI 798 >gi|94676688|ref|YP_588660.1| alanyl-tRNA synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|205829990|sp|Q1LTQ4|SYA_BAUCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94219838|gb|ABF13997.1| alanyl-tRNA synthetase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 884 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 361/904 (39%), Positives = 539/904 (59%), Gaps = 63/904 (6%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 MSN S+ +R FL FF + GH+++ SSSL+ NDPTL+FTN+GM FK++F G +K +Y Sbjct: 1 MSNNSTAELRQEFLNFFHQKGHKIVASSSLVSHNDPTLLFTNAGMNQFKDVFLGLDKRLY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 Q+ TT Q+C+RAGGKHNDL+ VG T RHHTFFEMLGNFSFG YFK AIQLAW+LLT + Sbjct: 61 QSATTAQRCIRAGGKHNDLEKVGYTARHHTFFEMLGNFSFGAYFKCEAIQLAWELLTGGQ 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPC 169 F+L + +L++TVY D+E + +W K + ++I+RI N DNFW M + GPC Sbjct: 121 WFNLPKDKLWVTVYATDDETYNIWAKQINIPRERIVRIGDNKGKAYASDNFWQMGDIGPC 180 Query: 170 GPCSEIFFDQGECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPCSEIFFD G + G PGS E G+RYIEIWNLVF+QF +Q L K S+DTGM Sbjct: 181 GPCSEIFFDHGNHLFGAPPGSQGEYGDRYIEIWNLVFIQFNRQMDGTLIPLQKPSVDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIAD 288 GLER+A VLQ +NYDID+F LI+A VT + N + +VI DH+RS +FL++D Sbjct: 241 GLERIAAVLQHVNSNYDIDIFSQLIKAVADVT----KATNTSSLQVIADHIRSCAFLVSD 296 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G++P+ +GRGYVLR I+RRA+ + +LG + L+ L MGS +L Q + ++E Sbjct: 297 GVVPSQDGRGYVLRHIIRRAIRHGYMLGARDAFFYKLVAPLIEVMGSTADQLKQQQNMVE 356 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + LR+E+E+F +TL+RGL +L+ VL+ L D L+G+ AF LYDT+GLP+ + DI R Sbjct: 357 QVLRTEEEQFSQTLERGLFMLEQVLTKLTGD-TLDGETAFSLYDTYGLPIYLTTDICRER 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D F A+E QR+RAR S + S+ T+F+GY K Sbjct: 416 NIK-VDENGFKSAMEVQRNRAREAS------RFSYKYNSMLSINQYTRFLGY------KH 462 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +K K V A+ + VE +K V+ D TPFY E+GGQ+ Sbjct: 463 LKSQGK-----------------VTALYLNDQSVEVIYHSEKAIVILDYTPFYGESGGQI 505 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GD+G +GI ++ D +K + H ++ G LR + ++ R ++S+NH Sbjct: 506 GDSGKITAANGI-FEVIDTKKYGNAL-GHLGMLNYGELRIGDQVTAKVNQLRRDRISVNH 563 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLL AL +LG HV Q GS + LRFD +H + + ++ +E +N I +NL Sbjct: 564 SATHLLQSALRQLLGKHVVQRGSLVHDQYLRFDFSHHQAMQVEQIHEVEKIINQQIRRNL 623 Query: 648 PVVTRIMNREDAIASGAAALLGTKY-NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 + T +M E A GA ++L +Y + +VRV+S+ G S+ LC GTH S TG+I Sbjct: 624 IIKTDMMTLEAAQNQGAISVLDHQYESSQVRVLSI-----GDFSTELCCGTHASRTGDIG 678 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L +I SES I GIRRIEAITG+ A +L Q ++ ++ K N+V +V + Sbjct: 679 LFWISSESGIALGIRRIEAITGEFALKNLHQQSNLVQQISQLFKNDGSNLVEKVRGLQNH 738 Query: 767 YRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQ 821 ++L+ + + K + ++++ KI+ ++ ++S++++ E ++ ++D ++ ++ Sbjct: 739 IKQLESKYQQLKSKQVAQEIAVLSRKISKMHGTQVLVSKLENIEPKIMRHIVDEIKHQLG 798 Query: 822 SGIIMLVGIS-KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +I+L I+ + K +++ VT+DL +R A D+ R + GG GGG + +A +G Sbjct: 799 SVVIILANINLVDGKVNLIAGVTDDLTNRIQASDIIRTLIQKFGGRGGGSKK-IAYAGSI 857 Query: 881 NGNK 884 N+ Sbjct: 858 TTNE 861 >gi|324013703|gb|EGB82922.1| alanyl-tRNA synthetase [Escherichia coli MS 60-1] Length = 784 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 355/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + E+ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSER 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDATALPAALASVKGWV 779 >gi|309791340|ref|ZP_07685863.1| alanyl-tRNA synthetase [Oscillochloris trichoides DG6] gi|308226650|gb|EFO80355.1| alanyl-tRNA synthetase [Oscillochloris trichoides DG6] Length = 895 Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust. Identities = 362/909 (39%), Positives = 532/909 (58%), Gaps = 56/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR T+L+FF+++GH ++PS+SL+ +DPTL+F NSGMVPFK++F G E+ Y TT Sbjct: 9 AQIRETYLKFFERHGHTIVPSTSLVVADDPTLLFVNSGMVPFKDVFLGLEQRPYSRATTA 68 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG + RH TFFEMLGNFSFG YFK AI +AW LL +EF L R Sbjct: 69 QKCLRVSGKHNDLEEVGPSPRHQTFFEMLGNFSFGDYFKADAIAMAWKLLVEEFKLPVER 128 Query: 125 LYITVY---DE---DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L+ TV+ DE DEEA +LW G +++R DNFW M +TGPCGPCSEI Sbjct: 129 LWFTVFAGDDEVPADEEAAQLWIA-QGADPARVLRFGRKDNFWVMGDTGPCGPCSEITMY 187 Query: 179 QGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ + G + + Y+EIWN VFMQ+E+ + LP+ S+DTGMGLERM V+ Sbjct: 188 IGDDLAKMSAAGVNSDDPDYVEIWNNVFMQYERSTMRP---LPRQSVDTGMGLERMTMVM 244 Query: 238 QEKTNNYDIDLFKHLIQA--SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q +NYD DLF +I +E + + N+ +R I DH R+ +FLIADG+LP N Sbjct: 245 QGVHSNYDTDLFVPIINRIITELGSDEAHYRANLAPYRAIADHSRAIAFLIADGVLPGNN 304 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GR YVLRRI+RRA R +G+T P + ++ + EM AYP+L + I E+ +E+ Sbjct: 305 GRSYVLRRILRRAAYQGRSIGFTRPFLAEVISTVIGEMAPAYPQLAERHAFILESANAEE 364 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ++F +TL G+ L ++ + + G+ AF L DT+G PLD+ Q I GL + Sbjct: 365 QQFLRTLSGGISRLSTIIEQVQSSGGNAVPGNDAFVLKDTYGFPLDLTQRIAGEAGLT-V 423 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D + A+ EQR R+RA + G +IW + +T+F+GY + Sbjct: 424 DEAGYTAAMNEQRERSRAAAQ-FKRGADAEIW--ADKGLPSTEFLGYTQV---------- 470 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S + A+V G+ V A +G VE+V D+TPFYAE+GGQ+GD+G Sbjct: 471 -------------AASGQILALVANGDDVSSATTGSPVEIVLDRTPFYAESGGQVGDSGR 517 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +G +++ D + A G+ VH+ +VE G + ++ + R + NH+ATH+L Sbjct: 518 LVGPHGTVRVDDTLRPAPGLIVHYGVVESGQVTVGEAVQAEVAVTRRADIERNHTATHML 577 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL ++G H +Q GS + PD LRFD TH++ + +A+L+ IE +N + + V ++ Sbjct: 578 QRALRDVVGEHAAQAGSLVAPDRLRFDFTHNRALDTAQLREIESRLNAWVRADGAVAWQV 637 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVE------YEDGGVHSSALCGGTHVSSTGEIML 707 M+ + A+ +GA AL G KY D+VR+V++E E S LCGGTHV TGEI Sbjct: 638 MDYQAALDAGAIALFGEKYGDQVRMVTIERNGTTSMEFASRDSRELCGGTHVKRTGEIGY 697 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + +V ESSI +GIRRIEA+TG+ A Q E L+ LA L VS V RVE++ E Sbjct: 698 VRLVGESSIGSGIRRIEALTGRGAEVWAEQQAEVLRDLAGRLGVSVAQVSERVEQLVSEN 757 Query: 768 RKLQ--LIHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 R+ Q L + K+ + ++E L + ++ V ++ + D+ L+ + D L+ K+ S Sbjct: 758 RQRQQELDALRGKMARASIESLLDTVNRDGAVPVLAAQVEAEDANRLREMGDWLRDKLGS 817 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+I+L G +K +L +VT DL+ ++A +L + A+++ GGGGGGRP MAQ+GG + Sbjct: 818 GVIVL-GTVIAEKPQILTMVTPDLVKAGYHAGNLVKALAQIV-GGGGGGRPEMAQAGGRD 875 Query: 882 GNKADQAIA 890 K + IA Sbjct: 876 VRKLAEVIA 884 >gi|226227321|ref|YP_002761427.1| alanyl-tRNA synthetase [Gemmatimonas aurantiaca T-27] gi|226090512|dbj|BAH38957.1| alanyl-tRNA synthetase [Gemmatimonas aurantiaca T-27] Length = 928 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 373/957 (38%), Positives = 523/957 (54%), Gaps = 136/957 (14%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--YQA 60 N S IR+ FL FF+KNGH + PSSSL+P +DPTL+FTN+GMV FK +F G E+ + Sbjct: 2 NASEIRSRFLAFFEKNGHAIRPSSSLVPADDPTLLFTNAGMVQFKKVFLGMEEAPDGKRR 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVRAGGKHNDL+ VG T RHHTFFEMLGNFSFG YFK AI+ AW+ +T++ + Sbjct: 62 ATTSQKCVRAGGKHNDLEQVGHTARHHTFFEMLGNFSFGDYFKRDAIKFAWEFITEDLKI 121 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + L +TV+ ED+EA +LWK ++ + ++I + DNFW MA+TGPCGPC+EI+ D Sbjct: 122 PREHLRVTVFHEDDEARQLWKDVADVPENRIYGLGAKDNFWQMADTGPCGPCTEIYVDLA 181 Query: 181 E-----CIPGGLPG----------------SSEEGERYIEIWNLVFMQFEQQNKQERFIL 219 + P G E R++EIWNLVFMQF++Q L Sbjct: 182 KLAADWAFPADATGEWTNTEIEDYSLDAFVEGAEAGRFLEIWNLVFMQFDRQADGTLVPL 241 Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------------E 265 PK S+DTG GLER+A V+Q TNN+ DLF+ LI E V G+ Y + Sbjct: 242 PKPSVDTGAGLERIAAVMQGVTNNFHTDLFRPLIAKVEDVVGIGYPYRPGVGLGKAYAKD 301 Query: 266 GNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323 G I + RV+ DH R+ FL+ADG+ P+NEGRGYVLRRI+RRA+ +A LLG EP ++ Sbjct: 302 GQEIDPASFRVLADHARAVGFLLADGVFPSNEGRGYVLRRILRRAVRHAWLLGRREPTLV 361 Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL---LDGVLSHLGKDE 380 H++ L M YPEL + I ET R+E++RF T+D G+ L S G Sbjct: 362 HVVEVLIDTMRDLYPELHVRRKHILETTRAEEDRFLTTIDAGMSRFEELAPAASTQGSTT 421 Query: 381 I---LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS------RARA 431 + L+G+ AF+LYDT G P+D+ + RG +DI F ++L+ QR ++R Sbjct: 422 MRGTLSGEDAFRLYDTFGFPIDLTDLMARERGYL-VDIAGFERSLQAQRKQSQEDRKSRQ 480 Query: 432 HSLGLGSGTTEKIWFSLKEKYGAT-QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490 ++ W ++ A +F+GY+ T + + Sbjct: 481 ITVSADDFADPTHWTHDQQHQAALGRFVGYE-----------------------TTEIET 517 Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-- 548 IV A+ Q + +V V+ +TPFYAE+GGQ+ D G G+G +++ +V+K Sbjct: 518 IVTAVRQ--------LPDGRVAVMLRETPFYAESGGQVSDHGTITGEGWTVEVNEVRKLD 569 Query: 549 ---------KAEGIFVH-HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 E IF HA+V R RR +H+ATHLLH AL Sbjct: 570 GRIAAIGSSTGEIIFGRAHAVVPR---------------DRRRDTERHHTATHLLHAALR 614 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS +TPD LRFD TH P+T+ +L +IE +VN + Q+ PV TR + D Sbjct: 615 KVLGDHVHQAGSLVTPDRLRFDFTHHGPVTAEQLAAIEADVNAGVWQSAPVNTREESYVD 674 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+A GA AL G KY D VRVV + S LCGGTHV +T EI L+ +++ES + A Sbjct: 675 AVAHGAMALFGEKYGDVVRVVEIPS-----LSVELCGGTHVRNTAEIGLVRVINESGVAA 729 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKR 777 G+RRIEA++G RA L ++ L +AS LKV + E+I RKL L+ ++ Sbjct: 730 GVRRIEAVSGPRAFQFLADRERALLQVASRLKVPMSGMTSGAEQI---ERKLDALMDERK 786 Query: 778 KLQLNVED-------------LSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821 +L+ +E+ K D I ++V D K L+++ DA+++ + Sbjct: 787 QLEKRLEESLRGGGAGGGLAQQLIAKAIDAGGTRFIAAKVDVPDVKALQALGDAVREALG 846 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 SG+ +L + K ++L V T+D DR D GG GGG+PHMAQ+G Sbjct: 847 SGVAVLGAALADGKGALLAVATDDARDRGLRADAVVRDVAATVGGRGGGKPHMAQAG 903 >gi|258515483|ref|YP_003191705.1| alanyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771] gi|257779188|gb|ACV63082.1| alanyl-tRNA synthetase [Desulfotomaculum acetoxidans DSM 771] Length = 878 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 368/905 (40%), Positives = 541/905 (59%), Gaps = 49/905 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +FL FF K GH ++PS+SLIP NDP++++T +GMVPFK FTG P + VTT Sbjct: 4 NEIRDSFLNFFAKRGHYIIPSASLIPANDPSILWTAAGMVPFKPFFTGAATPEHTRVTTC 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R D+D VG+T RHHTFFEMLGNFSFG YFK AI AW+ +T L + + Sbjct: 64 QKCLRT----PDIDVVGKTARHHTFFEMLGNFSFGDYFKTEAINWAWEFVTVNLGLPKEK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+I++Y+ D+EAF++W K + ADKIIR+ + NFW + GPCGPCSEI+ D GE Sbjct: 120 LWISIYENDDEAFEIWHKQVAIPADKIIRLGKDTNFWEIG-VGPCGPCSEIYIDLGEHRG 178 Query: 185 GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G G + +RY+EIWNLVF+QF + + L IDTGMGLER+A+VLQ+ Sbjct: 179 CGSADCGVGCDCDRYLEIWNLVFIQFFRDEEGNYTPLENKGIDTGMGLERVASVLQDVRT 238 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300 N+D DL + ++ + + + Y ++ + +VI DH R+ +F I DG LP+NEGRGYV Sbjct: 239 NFDTDLLREIMDYTAEQLKVIYGKDDKTDLALKVIADHSRAVTFAIGDGALPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RR++RRA+ + R LG E + + A+ +M Y +L + I++ + +E++RF + Sbjct: 299 IRRLIRRAVRFGRSLGVDELFLHKVAGAVIHQMSGTYTDLGSNQGHIKKVILNEEKRFSE 358 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL G +L+ ++ + +++G AF+LYDT+G PL++ Q+I +GL ID SF Sbjct: 359 TLANGTEILNKLIEEAIRAGNAVISGLDAFQLYDTYGFPLELTQEIAGEQGLL-IDEDSF 417 Query: 419 NQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 QA+E QRSRAR A T ++ +++++ G T FIGY+ L+ + KVL Sbjct: 418 VQAMESQRSRARSARQETEYISETGVLYKNIRDERGTTNFIGYNALQA------EAKVL- 470 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 A+V+ G+ V+ A +G ++E+V D TP YAEAGGQ+ D G Sbjct: 471 ----------------ALVKDGQNVQSAQAGDEIEIVLDITPCYAEAGGQVTDFAVLSGQ 514 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + I+ V K E + VH VE G+L+ ++ + + + R ++ NHSATHLLH AL Sbjct: 515 DLNVMISQVIKPVENLIVHKGKVESGLLQVNDTVKIEVAGERRLSIARNHSATHLLHKAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV+Q GS + PD LRFD TH +++ EL IE VN I NLPV + Sbjct: 575 KEVLGEHVNQAGSLVEPDRLRFDFTHYAAVSNEELNKIEKIVNRTILSNLPVTVSESSLS 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GAAAL G KY D VRVV + G S LCGGTH+ ST EI L ++SESSI Sbjct: 635 KAREMGAAALFGEKYGDLVRVVKM-----GEFSLELCGGTHIHSTAEIGLFKLISESSIG 689 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RR+EA+TG+ A ++ ++++L LA +K S +V RVE I + ++L+ Sbjct: 690 SGLRRVEAVTGEGALHYIETKEQQLLMLAHLVKSSPNELVRRVESIIKSVKELEHESEAL 749 Query: 778 KLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L VE+L I ++ ++ S D L++++D L+ KIQSGI+ L + Sbjct: 750 KAKLARFEVENLLSQVKMIKNIKVLAAKASAADMDSLRAMVDLLRDKIQSGIVFLSA-AN 808 Query: 833 EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 KA+++ VT+DL +A L + A V+ GGGGGGRP MAQ+GG + ++ +AI Sbjct: 809 NGKANLVAAVTKDLTSIGLHAGKLIKEVAPVV-GGGGGGRPDMAQAGGKDASRIPEAIEK 867 Query: 892 VASFL 896 V + + Sbjct: 868 VYTVV 872 >gi|261415443|ref|YP_003249126.1| alanyl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371899|gb|ACX74644.1| alanyl-tRNA synthetase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 882 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 354/910 (38%), Positives = 522/910 (57%), Gaps = 57/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +F++FF+ GH + SS ++P +DPTLMFTN+GM FK IF G ++ Sbjct: 8 AQVRESFIKFFESKGHLFVRSSPVVPHDDPTLMFTNAGMNQFKAIFLGDNPKGWKRACNS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDLD VGR N HHTFFEMLGN+SFG Y+K+ AI AW+LLT+ + L + R Sbjct: 68 QKCLRVSGKHNDLDVVGRDNYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKLPKER 127 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180 L+ TVY +D+EA+++WK +SGL D+I+R + NFW M +TGPCGPCSEI +D+G Sbjct: 128 LFATVYQDDDEAWQIWKDVSGLPDDRIMRFDAHSNFWEMGDTGPCGPCSEIHYDRGDLAT 187 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E + G + E +RYIEIWN VFMQ+E+ + L ++D GMG ER+ +LQ Sbjct: 188 QAETFKDPIKGVNGENDRYIEIWNNVFMQYERVSDGSLIPLKAKNVDIGMGFERICAILQ 247 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 KT+NYD D+F +I +++G+ Y +G HRVI DH+R+ SF IADG LP+NEGR Sbjct: 248 GKTSNYDTDVFTPIIAKIAELSGVPYNDGEAGTPHRVIADHIRAISFAIADGALPSNEGR 307 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA +ARLLG +P + L+ L MG A+PE+ + K + ++SE+E Sbjct: 308 GYVLRRILRRASRFARLLGQKKPFICQLVQVLADTMGDAFPEIRERKEFVASVIKSEEES 367 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F +TLD GL + + L K + + GD F LYDT+G P D+ + +GL ID Sbjct: 368 FIRTLDAGLERFAAISAELKKGDKIPGDKVFLLYDTYGFPPDLTGILAEEKGLL-IDEEG 426 Query: 418 FNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + + + EQ+ RARA+ G+ + TE W E +T F+GY+L Sbjct: 427 YEKCMNEQKERARANMKQGINTMGTEG-WTQYSE--ASTNFVGYEL------------SA 471 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 C+ + +V+ +G + +V + +PFYAE GGQ+GD G + Sbjct: 472 CE----------TKVVRWREDKGVL----------SIVLETSPFYAEMGGQVGDKGTLVS 511 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL--TIDYQNRRQLSINHSATHLLH 594 + +Q+ D K + +V+ M V T+D R + NHSATHLL Sbjct: 512 ADLEIQVFDTVKVNDTALCRGKVVKGEANEKTMGAVFMATVDNDRRADIRKNHSATHLLQ 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS ++ + LRFD +H +T+ E++ +ED VN I + LPV T +M Sbjct: 572 AALREVLGTHVQQQGSFVSNELLRFDFSHFNAMTAEEIQKVEDIVNAKIMECLPVHTDVM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH-SSALCGGTHVSSTGEIMLLYIVSE 713 + ++A ASGA AL G KY D+VRVV + D GV S LCGG HV +TG I ++ IVSE Sbjct: 632 DVDEAKASGAMALFGEKYGDKVRVVKM--GDAGVEFSRELCGGLHVQNTGNIGMVKIVSE 689 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 SS+ AG+RRIEA++G+ A S L + L +L L+ V+ R+++ + + + L+ Sbjct: 690 SSVSAGVRRIEAVSGRGALSLLRAGTQILNALREQLRCKDAEVLDRIQQTFAKTQNLEKS 749 Query: 772 LIHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L K +L + + VN +S D K K+++D +Q K+ + ++ Sbjct: 750 LQFVKLELATLAAAELLNGGINVMGVNLFVRELSLPDEK-YKNLLDGVQNKLDVDSVAVI 808 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S+ ++V +++ + A D+ R AK G GGGRP AQ+G K + Sbjct: 809 ANKDNGSGSIAVMVGKNVQAKGIKAGDIVRDLAKAC-NGKGGGRPDRAQAGTREPEKIAE 867 Query: 888 AIAGVASFLK 897 AIA ++++ Sbjct: 868 AIANANNWIR 877 >gi|33519641|ref|NP_878473.1| alanyl-tRNA synthetase [Candidatus Blochmannia floridanus] gi|81666648|sp|Q7VQG3|SYA_BLOFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33517304|emb|CAD83689.1| alanyl-tRNA synthetase [Candidatus Blochmannia floridanus] Length = 891 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 358/913 (39%), Positives = 527/913 (57%), Gaps = 57/913 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL+FF K H+++PSSSL+P ND TL+FTNSGM FK+IF G KP Y+ V T Sbjct: 5 IDVVRQEFLDFFHKQEHQVVPSSSLVPKNDQTLLFTNSGMNQFKDIFLGLVKPSYKRVVT 64 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 Q+C+RAGGKHNDL+NVG T H TFFEMLGNFSFG YFK+ AIQ AW+LLT F L Sbjct: 65 AQRCMRAGGKHNDLNNVGYTECHLTFFEMLGNFSFGDYFKDDAIQFAWELLTDSNWFGLS 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT-------NDNFWSMAETGPCGPCSE 174 + ++++T + ED+E++ +W K G+S +I++I +DNFW M GPCGPCSE Sbjct: 125 KDKIWVTTHIEDDESYNIWVKQVGISTKRIVKIGNKNSDLYDSDNFWQMGNIGPCGPCSE 184 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G + G PG + G RYIEIWNLVFMQF +Q LP +S+DTGMGLER+ Sbjct: 185 IFYDFGSDLKGKPPGYMQGLGSRYIEIWNLVFMQFNRQLNDRLIDLPMLSVDTGMGLERI 244 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 +LQ +NY ID+FK+LI + +K NN + VI DH+R+ FLI DG++P+ Sbjct: 245 TAILQGVHSNYLIDVFKNLIVDISNIMKVKEYINN-RSLYVIADHIRACVFLIKDGVVPS 303 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEG+GYVLRRI+RR++ + R LG + + L+ + M L K LIE+ L + Sbjct: 304 NEGQGYVLRRIIRRSVRHGRKLGVNDIFLYKLVNLVIVHMNYVSNILYDQKDLIEQILFN 363 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E++ F TL +GL LL+ L +L +D+IL+G++AF+LY T+G PL++ +DI C R + + Sbjct: 364 EEKLFNNTLKKGLELLEKSLKNLNQDKILSGEIAFQLYTTYGFPLELTKDICCERNIK-V 422 Query: 414 DIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D + F+Q L E+R+ R L I S K + F+GY Sbjct: 423 DQLEFDQIMLTERRNSKR---LSQFHKNFNNIILSSYAK--TSTFVGYKCFS-------- 469 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDT 531 CQ I A++Q E++ + Q+ V+ D TPFY E+GGQ+GD+ Sbjct: 470 ----CQSKII-----------ALLQDNELINKMCDVDQESMVILDITPFYGESGGQIGDS 514 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G+ ++ + +K + I VH ++ GI + ++ R+ +S+NHS+TH Sbjct: 515 GYLKGECGVFKVKNTKKYGQ-IIVHIGVLISGIFLIGEQVFAQVNRLKRKDISVNHSSTH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILGSHV+Q GS I RFD +H IT ++ +E+ +N I NL V Sbjct: 574 LLHSALLKILGSHVTQQGSLINDKYFRFDFSHYNAITITQINEVENLINQQIWDNLLVTE 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM E A GA LL +Y ++VRV+ + G S LCGGTHVS+T EI L I Sbjct: 634 NIMLMESARNIGAIMLLHKQYTEKVRVIQI-----GDCSIELCGGTHVSNTNEIGLFIIT 688 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 E I +G+RRIEA+T A S + + + ++++A + N++ + E Y KL Sbjct: 689 KEFGIGSGVRRIEAVTKNAALSVIQNKKKLIQNIAQIAQSDDVNLLNVIHEFKARYEKLD 748 Query: 771 ---QLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 +L+++K+++Q V L + I +V + + + ++S L ++ L+ +QSGI+ Sbjct: 749 REIKLLNSKQEIQ-KVLSLVREVYYIKNVRVLVNHVKNMESSSLFKMVKLLKHYLQSGIV 807 Query: 826 MLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +L+ I K A ++I +T+DL+ +R A+DL + + + G GGGR AQ N Sbjct: 808 VLINIRKNNIAHIVISITKDLVECNRIYAIDLIQYIIRSVKNGKGGGRFDFAQLNINNVK 867 Query: 884 KADQAIAGVASFL 896 + + + S L Sbjct: 868 NVSELVIQIQSLL 880 >gi|124514184|gb|EAY55699.1| Alanyl-tRNA synthetase [Leptospirillum rubarum] Length = 891 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 370/898 (41%), Positives = 526/898 (58%), Gaps = 65/898 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FL +F +GH+++PS+SLIP DPTL+FTN+GMVPFK+IF G EK + ++QK Sbjct: 6 LRQKFLLYFNGSGHDVVPSASLIPAGDPTLLFTNAGMVPFKDIFLGAEKTTRKRAVSIQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI AW LTKE +D+R L+ Sbjct: 66 CVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAISFAWTFLTKELGMDRRLLW 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TVY ED+EA +LW++++ + D+I+R+ DNFW M +TGPCGPCSEI DQGE G Sbjct: 126 VTVYREDDEAERLWREVTDVLPDRIVRLGEKDNFWQMGDTGPCGPCSEILVDQGERFSCG 185 Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P + +R++EIWNLVFMQ+++ + LP+ SIDTGMGLER++ V+Q+K +NY Sbjct: 186 SPDCKVGCDCDRFLEIWNLVFMQYDRNAEGVLSPLPRPSIDTGMGLERLSAVVQKKDSNY 245 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DLF LI+ E + + Y EG+ +RVI DHLRSS FL+ +GI P+NEGRG+VL Sbjct: 246 ETDLFMPLIRTIETYSRVHYGAGEGSLDHAYRVIADHLRSSVFLLHEGIAPSNEGRGHVL 305 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + R LG P++ L ++ M YPEL + I++ LR E+ RF +T Sbjct: 306 RRIIRRALLFGRELGLPHPILPSLAESVAEMMAKPYPELRTSLSRIQDVLRLEEGRFHQT 365 Query: 362 LDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+ GL L+ +L L K +++ G++ F L+DTHG PLDI++D +G+ +D F Sbjct: 366 LESGLPLVQEMLRTLEKKQEKVFPGEMLFLLHDTHGFPLDIVEDAAKMQGIL-LDYKGFE 424 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +EEQR R R+ +G E + + +F GY+ K Q Sbjct: 425 EKMEEQRERGRSS----WTGKKEDFPLPSDKLKKSVEFQGYE------------KTSMQG 468 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + L NG E V+E +G+ V VV D+T FY E GGQ+GD G IG Sbjct: 469 TVLFLLNG-----------KEEVKEVHAGESVLVVLDKTVFYPEGGGQVGDVGDLIGPFG 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++ +K G V V G + ++ +D + R+ +H+ATHLLH AL T Sbjct: 518 YIRVRGAKKPYPGWIVLSGEVVSGKVSVGETIDQHVDEEARQGSERHHTATHLLHAALRT 577 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG V Q GS + P+ LRFD T +P++ L ++E VN I +N PV M + A Sbjct: 578 VLGEQVRQAGSLVAPERLRFDFTCPQPVSPENLLAVEALVNGWIFRNSPVDASEMEKSKA 637 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA A KY DRVRVV V S LCGGTHV STG+I L I+ E+ + AG Sbjct: 638 LDMGALAFFDEKYGDRVRVVQVPGT-----SVELCGGTHVRSTGQIGSLLILQETGVAAG 692 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE----YRKLQLIHA 775 IRRIEA+ G A + ++LK L L+ ++ + I E +++Q + + Sbjct: 693 IRRIEAVAGPLAYQKAVTWRQELKDLRELLEAGTSSLEEKTRTILRENAACQKEIQSLKS 752 Query: 776 K---------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + RK L VE H++A ++ +S D +EL+ MDA++ KI SG I+ Sbjct: 753 RLFSLEEKHSRKETLEVEG---HQLAVLH-----VSLDDPRELRVRMDAIKSKIPSGAIL 804 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGN 883 L+G + +K A L + DL + F + L+A+V GG GGG+P A+ GGP + Sbjct: 805 LIGETTDKLA-FLGWTSSDLGEAFPISQWVKTLAAEV--GGKGGGKPSWAEGGGPKPD 859 >gi|149194975|ref|ZP_01872068.1| alanyl-tRNA synthetase [Caminibacter mediatlanticus TB-2] gi|149134896|gb|EDM23379.1| alanyl-tRNA synthetase [Caminibacter mediatlanticus TB-2] Length = 846 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 360/892 (40%), Positives = 529/892 (59%), Gaps = 60/892 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTVQ 65 IR FL+FF+ GH++ PS+ L+P +DP+L+FTN+GMVPFK IFTG++ P T+ Q Sbjct: 3 IRKKFLDFFESKGHKVYPSAPLVP-DDPSLLFTNAGMVPFKPIFTGEKPAPTPPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG TNRHHT FEMLGNFSFG YFKE AI AW+ +T+ LD+ RL Sbjct: 62 LCMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFGDYFKEEAIAYAWEFVTEVLKLDKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 +IT+++ D+EA K+W+K +S D+I+++ DNFW M +TGPCGPCSEI +DQGE Sbjct: 122 WITIHESDDEAGKIWQKY--VSKDRIVKMGDKDNFWQMGDTGPCGPCSEIHYDQGEKFNS 179 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 EG+R++EIWNLVFMQ+ + + LP+ SIDTGMGLER+ V + +NY+ Sbjct: 180 SEDYLGGEGDRFLEIWNLVFMQYNRDESGKLTPLPRPSIDTGMGLERITAVFEGVESNYE 239 Query: 246 IDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 +FK LIQ ++TG +Y + +HRVI DH+R+ SFL+A G+ EGRGYVLRRI Sbjct: 240 TSIFKPLIQKVVEITGKEYFKDKRGASHRVIADHIRAVSFLVAQGVRFDREGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RR + + +LG EP M ++ L +M YP L + K I+E ++ E+ERF +T+D+ Sbjct: 300 LRRGVRHGYMLGMKEPFMYKIVDTLANQMKDNYPYLEEKKEAIKEAIKIEEERFFETIDK 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ L LS + I +G+VAFKLYDT+G PLD+ QD+L +DI +F++ ++E Sbjct: 360 GMALFKEELSKTTGN-IFSGEVAFKLYDTYGFPLDLTQDMLREVN-KKVDIETFDRLMKE 417 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q+ RARA+ G G +KI EKY +F+GY+ Sbjct: 418 QKERARANWKGSGD---KKINLKDLEKYPPNKFVGYE----------------------- 451 Query: 485 TNGVSSIVKAIVQQ--GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG-IR 540 + +KA+ + E+ + SG V+ ++TPFYAE+GGQ+GD G I +G +R Sbjct: 452 KTSHKTKIKALFDEEFNEVDKLNGSGW---VMLEETPFYAESGGQVGDRGELRIENGELR 508 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + + D +K E + + VE+ L+ ++ +D ++RR+++ +HSATHLLH AL + Sbjct: 509 INVVDTKKFDE---RNLSKVEKAKLKVGDEVLAVVD-ESRREIAKHHSATHLLHSALRKV 564 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG H++Q GS + + LRFD TH K ++ EL IE+ VN +IA+ M+ ++A Sbjct: 565 LGEHITQAGSLVEANRLRFDFTHPKALSKEELNKIEEMVNRVIARGFEGEVSEMSIDEAK 624 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY D VRVV G S LCGGTHV +T EI YIV ES + AG+ Sbjct: 625 KLGAMALFGEKYGDIVRVVKF-----GDFSIELCGGTHVKNTSEIGSFYIVKESGVSAGV 679 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+ G A + + ++ L S ++ N + + E +E K K Q Sbjct: 680 RRIEAVVGYSAYEYGKNYRDLVEELKS---KNKTNDLDKFIEKQKEEIKKLKEEIKSLKQ 736 Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 V+++ +NF +I +D+ L+ + L+ ++ + + L+G +K K V + Sbjct: 737 AAVKEIKPINKDGINF---VIERIDNANLREIATDLKGRVDNLVTFLIGENKGKVNFVAV 793 Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +D+ A DL + A ++ GG GGG+P AQ GG + + D+ I V Sbjct: 794 SKVKDI----KAGDLIKEFAPIV-GGKGGGKPDFAQGGGKDIERIDEVIKKV 840 >gi|313648345|gb|EFS12789.1| alanyl-tRNA synthetase [Shigella flexneri 2a str. 2457T] Length = 784 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 353/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ ID R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADIDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IMN E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMNLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|300815902|ref|ZP_07096126.1| alanyl-tRNA synthetase [Escherichia coli MS 107-1] gi|300531831|gb|EFK52893.1| alanyl-tRNA synthetase [Escherichia coli MS 107-1] Length = 784 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 354/820 (43%), Positives = 501/820 (61%), Gaps = 56/820 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A+ + GG GGGRP MAQ+GG + A+A V ++ Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTDAAALPGALASVKGWV 779 >gi|300975107|ref|ZP_07172874.1| alanyl-tRNA synthetase [Escherichia coli MS 200-1] gi|300308788|gb|EFJ63308.1| alanyl-tRNA synthetase [Escherichia coli MS 200-1] Length = 784 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 352/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + E+ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSER 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|315289216|gb|EFU48614.1| alanyl-tRNA synthetase [Escherichia coli MS 110-3] Length = 784 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 496/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNESRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F+ A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFDAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|300919279|ref|ZP_07135796.1| alanyl-tRNA synthetase [Escherichia coli MS 115-1] gi|300413634|gb|EFJ96944.1| alanyl-tRNA synthetase [Escherichia coli MS 115-1] Length = 784 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQTDVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|300820470|ref|ZP_07100621.1| alanyl-tRNA synthetase [Escherichia coli MS 119-7] gi|300906808|ref|ZP_07124489.1| alanyl-tRNA synthetase [Escherichia coli MS 84-1] gi|300924257|ref|ZP_07140242.1| alanyl-tRNA synthetase [Escherichia coli MS 182-1] gi|301305420|ref|ZP_07211514.1| alanyl-tRNA synthetase [Escherichia coli MS 124-1] gi|301326280|ref|ZP_07219656.1| alanyl-tRNA synthetase [Escherichia coli MS 78-1] gi|309795155|ref|ZP_07689574.1| alanyl-tRNA synthetase [Escherichia coli MS 145-7] gi|300401409|gb|EFJ84947.1| alanyl-tRNA synthetase [Escherichia coli MS 84-1] gi|300419533|gb|EFK02844.1| alanyl-tRNA synthetase [Escherichia coli MS 182-1] gi|300526734|gb|EFK47803.1| alanyl-tRNA synthetase [Escherichia coli MS 119-7] gi|300839340|gb|EFK67100.1| alanyl-tRNA synthetase [Escherichia coli MS 124-1] gi|300847020|gb|EFK74780.1| alanyl-tRNA synthetase [Escherichia coli MS 78-1] gi|308121126|gb|EFO58388.1| alanyl-tRNA synthetase [Escherichia coli MS 145-7] gi|315254472|gb|EFU34440.1| alanyl-tRNA synthetase [Escherichia coli MS 85-1] gi|323154906|gb|EFZ41098.1| alanyl-tRNA synthetase [Escherichia coli EPECa14] gi|323159803|gb|EFZ45775.1| alanyl-tRNA synthetase [Escherichia coli E128010] gi|323167133|gb|EFZ52851.1| alanyl-tRNA synthetase [Shigella sonnei 53G] gi|323183219|gb|EFZ68616.1| alanyl-tRNA synthetase [Escherichia coli 1357] gi|324017048|gb|EGB86267.1| alanyl-tRNA synthetase [Escherichia coli MS 117-3] Length = 784 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|323188423|gb|EFZ73709.1| alanyl-tRNA synthetase [Escherichia coli RN587/1] Length = 784 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 496/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F+ A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFDAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKS 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|300976926|ref|ZP_07173678.1| alanyl-tRNA synthetase [Escherichia coli MS 45-1] gi|301027052|ref|ZP_07190429.1| alanyl-tRNA synthetase [Escherichia coli MS 69-1] gi|301049555|ref|ZP_07196510.1| alanyl-tRNA synthetase [Escherichia coli MS 185-1] gi|300298680|gb|EFJ55065.1| alanyl-tRNA synthetase [Escherichia coli MS 185-1] gi|300395217|gb|EFJ78755.1| alanyl-tRNA synthetase [Escherichia coli MS 69-1] gi|300409940|gb|EFJ93478.1| alanyl-tRNA synthetase [Escherichia coli MS 45-1] gi|315293661|gb|EFU53013.1| alanyl-tRNA synthetase [Escherichia coli MS 153-1] gi|315298718|gb|EFU57972.1| alanyl-tRNA synthetase [Escherichia coli MS 16-3] gi|324005757|gb|EGB74976.1| alanyl-tRNA synthetase [Escherichia coli MS 57-2] Length = 784 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|312965610|ref|ZP_07779840.1| alanyl-tRNA synthetase [Escherichia coli 2362-75] gi|312289759|gb|EFR17649.1| alanyl-tRNA synthetase [Escherichia coli 2362-75] Length = 784 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LNEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|310643515|ref|YP_003948273.1| alanyl-tRNA synthetase [Paenibacillus polymyxa SC2] gi|309248465|gb|ADO58032.1| Alanyl-tRNA synthetase [Paenibacillus polymyxa SC2] Length = 877 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 364/910 (40%), Positives = 517/910 (56%), Gaps = 74/910 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ +LEFF+ GH + PS+ L+P DP+L++ N+GM P K F G+ KP + Sbjct: 4 SEIRSKWLEFFESKGHVIEPSAPLVPHKDPSLLWINAGMAPLKPYFDGRVKPENPRIANS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT K D Sbjct: 64 QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDPKWIGFDP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +TVY EDEEA+KLW + GL A++II++ DNFW + E GPCGPC+EIF+D+GE Sbjct: 120 ERLAVTVYPEDEEAYKLWNEKVGLPAERIIKL--EDNFWDIGE-GPCGPCTEIFYDRGEA 176 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LP +IDTG GLER A++ Sbjct: 177 YGSDMTDPEMYPGG--ENERYLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 234 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ +N+D D+F+ LIQ + + G+KY N + V +VI DH+R+ +F I DG+LP+N Sbjct: 235 LQNVDSNFDTDIFQPLIQKTAAMAGVKYNDNVDSDVALKVIADHVRTVTFAIGDGVLPSN 294 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV+RR++RRA+ Y ++LG P M L+ + MG YPE++ + I + +++E Sbjct: 295 EGRGYVIRRLLRRAVRYGKMLGMNRPFMFELVETVGDIMGVYYPEVVDKRDFIIKVIKTE 354 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL GL +L + + + +++G AFKLYDT+G P D+ +D +GL Sbjct: 355 EERFHETLTDGLAILADISAQAKAEGRNVISGADAFKLYDTYGFPFDLTEDYADEQGLK- 413 Query: 413 IDIISFNQALEEQRSRAR-AH----SLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGS 466 +D F++A++EQR RAR AH S+ + G +L + + F+GY DL+ S Sbjct: 414 VDREGFDEAMQEQRQRARDAHQDNASMKIQGG-------ALSDLAVKSDFVGYNDLVTES 466 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 K + AIV +VE GQ +VV D TPFYAE+GG Sbjct: 467 KIV------------------------AIVYDDMLVESVSEGQSCQVVLDVTPFYAESGG 502 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ D G G + ++ + K +G VH +VE G L ++ +D +R ++ N Sbjct: 503 QVSDHGLLRGGTVTAKVEGLFKAPQGQHVHQVVVEAGELNVGDTVKAEVDQASRGEIEKN 562 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL +LG HV+Q GS + P LRFD +H IT EL IE VN I Sbjct: 563 HTATHLLHKALKEVLGDHVNQAGSLVEPGRLRFDFSHFGSITPEELADIELRVNRAIWSQ 622 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 L V + ++A A GA AL G KY D VRVV V G +S LCGG HVS+T +I Sbjct: 623 LNVTIELKPIDEAKALGAMALFGEKYGDIVRVVKV-----GDYSIELCGGCHVSNTSQIG 677 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L +VSES I +G+RRIEA+TG+ ++ GQ E LK A +K V R+E + ++ Sbjct: 678 LFKLVSESGIGSGVRRIEAVTGRFGFEYMEGQLELLKVSAGLVKSKLSEVPKRIESLQQQ 737 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKK 819 + L LQ + + ++ D V ++ + L+++ D L+ K Sbjct: 738 IKDLS--RENESLQSKLSAIEAGQLTDQVVQAGGVQLLAARVQASSMDALRAIADELKSK 795 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + + ++ L +K V++V E +A L + A V GGGGGGRP MAQ+GG Sbjct: 796 LPAAVLALGAAMDDKVNFVVVVPAEHTKTGLHAGKLVKEIAAVC-GGGGGGRPDMAQAGG 854 Query: 880 PNGNKADQAI 889 + +K D+A+ Sbjct: 855 KDASKLDEAL 864 >gi|222529322|ref|YP_002573204.1| alanyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725] gi|222456169|gb|ACM60431.1| alanyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725] Length = 883 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 358/909 (39%), Positives = 537/909 (59%), Gaps = 52/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + +T Sbjct: 4 STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L + Sbjct: 64 TCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL++T+Y+ED+EAF++W K GL D+I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEE 178 Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P G + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 179 KGCGRPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +DID+ K + +VTG Y + V+ RVI DH+R + F+I DGILP+NEGRG Sbjct: 239 DSLFDIDIVKAIRDKVCEVTGYDYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + R+LG E + ++ + + YPEL+Q I++ L +E+ RF Sbjct: 299 YVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESRF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D GL +L+ + L K++ +LNG++AFK+YDT+G PLD+ ++I +G+ ID Sbjct: 359 NQTIDVGLEILESEIEKLKKNKETVLNGEIAFKMYDTYGFPLDLTKEIAAEKGII-IDQE 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ +++Q+ RARA L + + I + E T F+GYD L K++ K+L Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTL------KQEAKIL 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 I L N + K EE V V+ D+TPFYAE+GGQ+ D G G Sbjct: 471 ----KIFLDNEEPAYAK---------EEDVCF----VILDKTPFYAESGGQVADKGILEG 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G+ ++ DV+K G +H V +G + S+V +D + R NH+ATHLLH A Sbjct: 514 EGVLAEVLDVKKGPRGTILHKVKVLKGEITVLSSVVAKVDEELRLAAMKNHTATHLLHSA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG H Q+GS +TPD LRFD H +P++ +L IE+ VN+II Q +PV + + Sbjct: 574 LRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQLIEIEEMVNNIIQQAIPVEKIVTDL 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS+ Sbjct: 634 DSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775 AG+RRIEAITG + ++ + LK L S +K S ++ ++E++ + + L++ Sbjct: 689 AAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLEVEIE 748 Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGI 830 K KL + +LS K D I++ + ++ K + D +++K I++ + + Sbjct: 749 KYKLLVVENELSSLFGKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKEKDSKAIVLNI-L 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888 + K +VL+ +++ + + VD ++ ++ GG GGGRP AQ GG + +K D A Sbjct: 808 EQSSKVTVLMSCSKEAVKK--GVDCGKVVKEICSVLGGKGGGRPDFAQGGGNDISKIDMA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 VQTAENILK 874 >gi|332088620|gb|EGI93733.1| alanyl-tRNA synthetase [Shigella dysenteriae 155-74] Length = 784 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|327251414|gb|EGE63100.1| alanyl-tRNA synthetase [Escherichia coli STEC_7v] Length = 784 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 495/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGVNFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|289549314|ref|YP_003474302.1| alanyl-tRNA synthetase [Thermocrinis albus DSM 14484] gi|289182931|gb|ADC90175.1| alanyl-tRNA synthetase [Thermocrinis albus DSM 14484] Length = 864 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 366/898 (40%), Positives = 524/898 (58%), Gaps = 49/898 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH + S+ LIP DPTL+F N+GMVPFKN+F G EK Y + Sbjct: 4 NEIRERFLSFFERKGHTRVRSAPLIPEGDPTLLFVNAGMVPFKNVFLGLEKRPYTRAVSC 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK AI AW+ LT+E L + R Sbjct: 64 QKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKREAILYAWEFLTQELGLPENR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+++VY +DEEA ++W + GL +++ R+ DNFW M E GPCGP SEI+ ++ Sbjct: 124 LWVSVYKDDEEALRIWTEEVGLPEERVWRMGEEDNFWQMGEVGPCGPSSEIYVER----- 178 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 SSE ER++EIWNLVFMQ+ + LP SIDTGMGLER+A+VLQ N+ Sbjct: 179 ----DSSE--ERFLEIWNLVFMQYNRDPSGHLHPLPHPSIDTGMGLERIASVLQNTPTNF 232 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 + DL + ++ E++TG Y + + V RVI DHLR+ +F +ADG++ +N GRGYVLR Sbjct: 233 ETDLLRPILAFGEEITGKAYGQDYLTDVALRVIADHLRALTFAVADGVIFSNTGRGYVLR 292 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + LG EP + + + M AYPELIQAK ++ ++ E+ERF +TL Sbjct: 293 RILRRALRFGYKLGVYEPFLYKGVDTVVRVMKDAYPELIQAKEYVKGLIKVEEERFLQTL 352 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 RG+ ++ +L K +L+G F +YDT+G PLD+++++ +GL ID+ F + + Sbjct: 353 RRGMPAVEELLQKGEKTGVLDGKDVFTIYDTYGFPLDLLEEMAREKGLT-IDMEGFEREM 411 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 QR RAR H + + + ++ LKE ++F+GY + S F K Sbjct: 412 NLQRERARKH-FKIEAKQIKPVYSHLKELGKTSRFVGYQ--QYSSFTK------------ 456 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 V AIV+ G++V E G+K E+V ++TPFYAE GGQ+GDTG G Sbjct: 457 ---------VLAIVKDGQLVSELREGEKGEIVIEETPFYAEGGGQVGDTGIIEGMEGVFH 507 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D Q EG+ +H +V +G ++ ++ ID + R + NH+ATHLLH AL +LG Sbjct: 508 VEDTQSPTEGVILHIGVVTKGRIKVGDEVLAQIDAERREDIRRNHTATHLLHAALRYVLG 567 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS ++ LRFD THS P+ E+K IE+ VN I +N PV+ M+ AI+S Sbjct: 568 DHVRQAGSLVSDKYLRFDFTHSSPLKEEEIKKIEELVNQQIMKNEPVIVEEMDYRTAISS 627 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A+ KY +RVRV+S G S LCGGTHV TG+I I+S+ S+ AG+RR Sbjct: 628 GAIAIFEEKYGERVRVIS-----AGSFSKELCGGTHVDRTGDIGYFKIISQESVGAGVRR 682 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ----LIHAKRK 778 I A TG+ A + LK LA L GN++ VE++ E + L+ + K Sbjct: 683 IVAKTGRWAVEEAYREHILLKELAEHLGTDPGNLLSVVEKLEERVKLLEREKSELELKLL 742 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + E L I VN ++ D L+ + D ++ K S +I L + E K S Sbjct: 743 QEKLKEALKKESINGVNLYWGMVENTDQSALRQMADQIRSKDSSAVIFLASVKGE-KLST 801 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 L+ V+++L + +AVD+ + +L GGGGGGR +AQ GG + A+ + + L Sbjct: 802 LVAVSKNLTHKLSAVDIVKQIGPIL-GGGGGGREDLAQGGGTKPDAFPTAVEKLRAIL 858 >gi|315645820|ref|ZP_07898941.1| alanyl-tRNA synthetase [Paenibacillus vortex V453] gi|315278581|gb|EFU41895.1| alanyl-tRNA synthetase [Paenibacillus vortex V453] Length = 875 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 364/916 (39%), Positives = 524/916 (57%), Gaps = 68/916 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K F G+ KP + Sbjct: 4 SEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRIANS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT K D Sbjct: 64 QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIGFDP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TVY EDEEAFKLW + GL +II++ DNFW + E GPCGPC+EIF+D+GE Sbjct: 120 EKLSVTVYPEDEEAFKLWNEKIGLPESRIIKL--QDNFWEIGE-GPCGPCTEIFYDRGEE 176 Query: 183 IPGGLPGSS----EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G P S E ER++E+WNLVF QF LP +IDTG GLER A++LQ Sbjct: 177 YGKGTPESEMFPGGENERWLEVWNLVFTQFNLNKDGSYTPLPNKNIDTGAGLERFASILQ 236 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D DLF+ +IQ + ++ G+KY + V +VI DH+R+ F + DG+LP+NEG Sbjct: 237 NVDSNFDTDLFQPIIQRTAELAGVKYNDSPEYDVALKVIADHIRTVVFAVGDGVLPSNEG 296 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYV+RR++RRA+ Y ++LG +P M L + MG YPE+++ + IE+ + +E+E Sbjct: 297 RGYVIRRLLRRAVRYGKVLGLDKPFMYTLTETVGDIMGVYYPEVVEKRAFIEKVVATEEE 356 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F KTL GL +L V + K +++G AFKLYDT+G P D+ +D GL +D Sbjct: 357 QFHKTLSDGLGILAEVSAEAKKQGKSVISGSDAFKLYDTYGFPFDLTEDYASENGLT-VD 415 Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKF 468 F+ A+EEQR RARA S+ + G +++K ++F+GY D +R +K Sbjct: 416 REGFDAAMEEQRDRARAARHETESMKIQGGVLSD--YTVK-----SEFVGYNDTVREAKV 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + AIV + GQ +V+ D TPFYAE+GGQ+ Sbjct: 469 L------------------------AIVSDDSFADSVSEGQTCQVILDATPFYAESGGQV 504 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G G +R ++ + K G VH VE G L+ ++ ++ R + NH+ Sbjct: 505 SDQGVLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVTAQVNASMRNDIVKNHT 564 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + P LRFD +H IT EL IE VN+ + +++P Sbjct: 565 ATHLLHKALKEVLGDHVNQAGSLVEPQRLRFDFSHFGSITQEELGDIERRVNEQVWKSIP 624 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV ++A A GA AL G KY D VRVV V G +S LCGG HV +T +I + Sbjct: 625 VVIERKGIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVGNTSQIGIF 679 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++ ES I +G+RRIEA+TG+ A HL Q + LK A LK + +V R+E + ++ + Sbjct: 680 KLLGESGIGSGVRRIEAVTGRYAYEHLEEQLDLLKQAAGLLKSNLTDVPKRIEGLNQQVK 739 Query: 769 KLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSG 823 L + + +L + S K+ V + EV + L+ + D L+ K+ Sbjct: 740 DLARENESLQGKLGAIEASQLTDKVKQVGNTPLLAVEVQAGSMDGLRGIADELKGKLPDA 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L G + K + ++ V +DL+ + ++A L + A V GGGGGGRP MAQ+GG + Sbjct: 800 ILVL-GSKADDKVNFVVAVPQDLVKKGYHAGKLVKEVASVC-GGGGGGRPDMAQAGGKDA 857 Query: 883 NKADQAIAGVASFLKK 898 +K QA+ + K Sbjct: 858 SKLAQALQHAEELVAK 873 >gi|303326376|ref|ZP_07356819.1| alanine--tRNA ligase [Desulfovibrio sp. 3_1_syn3] gi|302864292|gb|EFL87223.1| alanine--tRNA ligase [Desulfovibrio sp. 3_1_syn3] Length = 892 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 371/918 (40%), Positives = 530/918 (57%), Gaps = 46/918 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +L+FF ++ HE++PS LIP NDP+L+FTN+GMV FK +F G+EK Y Sbjct: 1 MLTAQEIRRRYLDFFLRHRHEIVPSGPLIPPNDPSLLFTNAGMVQFKKLFLGEEKRAYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKC+R GKHNDL+NVGRT RHHTFFEMLGNFSFG YFK AI AW +T+E L Sbjct: 61 AASCQKCLRVSGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKREAIAWAWQFVTEELQL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L++TV+ ED+EA ++WK ++GL+ +IIR+ DNFW+M +TGPCGPCSEI+ DQG Sbjct: 121 PKEKLWVTVFREDDEAAEIWKDVAGLTDARIIRMGEKDNFWTMGDTGPCGPCSEIYIDQG 180 Query: 181 E---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 E C P G + +R++EIWNLVF QF+Q R +L +IDTGMGLER+A V Sbjct: 181 EDMSCGPDCGIGKC-DCDRFLEIWNLVFTQFDQAADGSRALLAAPNIDTGMGLERIAAVC 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNI-VNHRVIVDHLRSSSFLIADGIL 291 Q K +N+D DLF+ +IQ + + G+ Y + N++ RVI DH RS++FLIA+G+L Sbjct: 240 QGKRSNFDCDLFQEIIQYAAGLAGVAYSFSAPDTNDVDTALRVIADHSRSAAFLIAEGVL 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NE RGYVLRR++RRA+ +A L+G EP M + + MG AYP+L+++ I+ + Sbjct: 300 PSNENRGYVLRRLIRRALRFATLMGVHEPFMHKVARKVTEVMGEAYPDLLESADFIDRAV 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E++RF TL++GL LL+ L L ++ G FKLYDT+G PLDI+ D+ RG Sbjct: 360 FEEEQRFSLTLEKGLHLLEEELQRLEAAGQTVIPGAFCFKLYDTYGFPLDIVTDVAGKRG 419 Query: 410 LAGIDIISFNQALEEQRSRARAHS-----LGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 D F + EQR RAR H LG G+G + + L + + F+GY+ L Sbjct: 420 FTA-DGSGFEAHMREQRERAREHQKKGGLLGQGAGEGDAAFKKLADDGLRSVFVGYESLT 478 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVFDQTPFYAE 523 +S V A++ G + V+ G+ V ++TPFY E Sbjct: 479 -----------------------AASPVTALLDAGGVPVDHLGEGETGFAVTEKTPFYGE 515 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ GD G + +K A + VH V RG + L++D +R+ Sbjct: 516 SGGQAGDAGLLAVVSGEAGVLTARKPAPDLIVHEIEVLRGEVHLGQEATLSVDADSRQST 575 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+ THLLH AL LG+HV Q GS + LRFD +H +T EL ++E +VN I Sbjct: 576 ARNHTCTHLLHAALRRTLGTHVKQAGSLVDSRRLRFDFSHIAALTPEELAAVERDVNRAI 635 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +LPV R M RE+A+A GA AL G KY + VRV++V E S LCGGTH+S TG Sbjct: 636 MADLPVAAREMPREEALAGGAMALFGEKYGETVRVLTVGCEGREPESMELCGGTHLSRTG 695 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 + IV+E+ + AG RRIEA+TG A + Q + +LA LK G + RV+ + Sbjct: 696 QAGSFLIVAETGVAAGTRRIEAVTGWNAYGLAVEQRAEAAALAGLLKSKPGQLAERVQTL 755 Query: 764 WEEYRKLQLIHAKRKLQ-LNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E +K++ K + DL +I V ++ + V K L+ +MD ++ ++ Sbjct: 756 QTEVKKMRKASEKAAAAPVTGADLLRRAEEINGVRLLAARLENVPVKALREIMDDVRSRL 815 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S + + +E K +L+ V++DL RF A L + GG GGGRP +AQ+GG Sbjct: 816 SSAGVACLATVEEGKVGLLLYVSKDLHGRFTAPALIK-EVAAPCGGAGGGRPDLAQAGGT 874 Query: 881 NGNKADQAIAGVASFLKK 898 D+A A + + ++K Sbjct: 875 KPEGIDEAFAVLKTLIEK 892 >gi|300899932|ref|ZP_07118138.1| alanyl-tRNA synthetase [Escherichia coli MS 198-1] gi|300356519|gb|EFJ72389.1| alanyl-tRNA synthetase [Escherichia coli MS 198-1] Length = 784 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 494/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGTNFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L + E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|300930550|ref|ZP_07145945.1| alanyl-tRNA synthetase [Escherichia coli MS 187-1] gi|300947031|ref|ZP_07161254.1| alanyl-tRNA synthetase [Escherichia coli MS 116-1] gi|300954931|ref|ZP_07167347.1| alanyl-tRNA synthetase [Escherichia coli MS 175-1] gi|301645328|ref|ZP_07245276.1| alanyl-tRNA synthetase [Escherichia coli MS 146-1] gi|312973095|ref|ZP_07787268.1| alanyl-tRNA synthetase [Escherichia coli 1827-70] gi|300318120|gb|EFJ67904.1| alanyl-tRNA synthetase [Escherichia coli MS 175-1] gi|300453345|gb|EFK16965.1| alanyl-tRNA synthetase [Escherichia coli MS 116-1] gi|300461571|gb|EFK25064.1| alanyl-tRNA synthetase [Escherichia coli MS 187-1] gi|301076398|gb|EFK91204.1| alanyl-tRNA synthetase [Escherichia coli MS 146-1] gi|310333037|gb|EFQ00251.1| alanyl-tRNA synthetase [Escherichia coli 1827-70] gi|315615081|gb|EFU95718.1| alanyl-tRNA synthetase [Escherichia coli 3431] Length = 784 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 494/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNTQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L + E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|309786227|ref|ZP_07680855.1| alanyl-tRNA synthetase [Shigella dysenteriae 1617] gi|308925972|gb|EFP71451.1| alanyl-tRNA synthetase [Shigella dysenteriae 1617] Length = 784 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 494/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQDAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|300941066|ref|ZP_07155582.1| alanyl-tRNA synthetase [Escherichia coli MS 21-1] gi|300454193|gb|EFK17686.1| alanyl-tRNA synthetase [Escherichia coli MS 21-1] Length = 784 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 494/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L + E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVV-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|319892672|ref|YP_004149547.1| Alanyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03] gi|317162368|gb|ADV05911.1| Alanyl-tRNA synthetase [Staphylococcus pseudintermedius HKU10-03] Length = 876 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 364/917 (39%), Positives = 523/917 (57%), Gaps = 73/917 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SDIRQMYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREVPKKPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT E ++ Sbjct: 67 QKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSERWMAMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ LW + GL+ D+IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 EKLYVTIHPEDTEAYDLWTNVVGLTEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDSAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHTYTPLPSKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++ Q+ NY+ DLF +I E ++G KY + +N V +VI DH+R+ +F I+DG Sbjct: 234 MTSISQDVRTNYETDLFMPIIGQVEAISGKKYLVDKDNDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ + M YP + + I Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLEINEPFMYQLVEIVADIMEPYYPNVKEKGDFIARV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +E + G+ AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEEGLAILNDLIKQAKSSNETIAGEDAFKLYDTYGFPIELTEEITLNEG 413 Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 LA ID+ SFN +E QR RAR A ++ LKE ++F+GY+ Sbjct: 414 LA-IDMDSFNDHMEAQRDRARKARQSSQSMQVQSEV---LKEINTVSKFLGYEAFE---- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + IV+ GE V A +G+ + + DQTPFYA +GGQ+ Sbjct: 466 -------------------THAKITDIVRDGERVTMADAGETIHFILDQTPFYAVSGGQV 506 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +Q+T+V K G +H +V+ G +R + TID Q R + NHS Sbjct: 507 ADKGTVSNAQFEIQVTEVIKAPNGQHLHTGVVQFGEVREAAEVTATIDRQARTAIMKNHS 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + D LRFD +H P+T+ E+K +E VN+ I ++P Sbjct: 567 ATHLLHAALKKVLGEHVNQAGSLVDSDRLRFDFSHIAPMTAKEMKQVEQMVNEEIWNSIP 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + MN EDA A GA AL G KY D VRVV+++ S LCGGTHV +T EI L Sbjct: 627 VEIQEMNIEDAKAKGAMALFGEKYGDIVRVVNMQ-----PFSIELCGGTHVRNTSEIGLF 681 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767 I SES AG+RRIEA+TGQ A +L ++ +L +K S V+ +VE++ Sbjct: 682 KITSESGTGAGVRRIEAVTGQNAFLYLEHYLDQFNALKQQVKAKSDAQVIEKVEQLQYNE 741 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVD---SKELKSVMDALQKKI 820 + L+ + LN +L I D +N MS +I+EV+ +K +++ MD + K+ Sbjct: 742 KTLKQTIEDKNKALN--ELKMGNIKDQVETINDMSVLITEVEVDNAKAMRTTMDDFKSKL 799 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 Q II+L K S++ V + L DR A D+ + A V+ GG GGGRP MAQ GG Sbjct: 800 QDSIIVLAS-DVGGKVSLIASVPKALTDRVKAGDIIKNMAPVV-GGKGGGRPDMAQGGGT 857 Query: 881 NGNKADQAIAGVASFLK 897 K +A+ + +++K Sbjct: 858 EPGKITEALQFIKNYIK 874 >gi|167037465|ref|YP_001665043.1| alanyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040127|ref|YP_001663112.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X514] gi|300914211|ref|ZP_07131527.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X561] gi|307724554|ref|YP_003904305.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X513] gi|320115879|ref|YP_004186038.1| alanyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|205830277|sp|B0K994|SYA_THEP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830278|sp|B0K0Q1|SYA_THEPX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|166854367|gb|ABY92776.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X514] gi|166856299|gb|ABY94707.1| alanyl-tRNA synthetase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889146|gb|EFK84292.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X561] gi|307581615|gb|ADN55014.1| alanyl-tRNA synthetase [Thermoanaerobacter sp. X513] gi|319928970|gb|ADV79655.1| alanyl-tRNA synthetase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 877 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 359/909 (39%), Positives = 546/909 (60%), Gaps = 55/909 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL FF+ GH LPS SLIP ND +L+ NSGM P K FTG+E P + VTT Sbjct: 6 MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R D++ VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L Sbjct: 66 CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y+ED+EAF++W KI GL ++I+R+ DNFW + TGPCGP SEI+FD+GE Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R+IE WNLVF QF + + LP +IDTGMGLER+AT++Q Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIATIMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D+ + + Q+ ++Y + V+ RVI DH+R +F+I+DGILP+NEGRGY Sbjct: 241 SIFDVDVIRGITNFVSQIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG + + ++ ++ G AYPE+I K I+ ++ E+ERF Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYRVVDSVVENYGEAYPEIIDRKDYIKRIVKLEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D+GL +L ++ L GK +L G AFKLYDT+G PLD+ ++IL G+ +D Sbjct: 361 ETIDQGLTILQDYINELKVQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEE 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + + LE+QR RAR+ S + I+ +L + T+F+GYD Sbjct: 419 GYTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYD--------------- 461 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 T +S V AIV+ E+VEEA +G V ++ D TPFYAE+GGQ+GD G Sbjct: 462 --------TYESNSKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDNGILEN 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + +++ D +K + F+H +ERG++ + ID +RR + NH+ATHLLH A Sbjct: 514 ENVLIKVKDCKKVGDR-FIHIGTIERGLISVRDEVKAQIDVVSRRNAARNHTATHLLHKA 572 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG HV Q GS + D LRFD +H + +T ELK IE+ VN+ I Q+L V Sbjct: 573 LKEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTY 632 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A+ GA AL KY D+VRVV ++ +S LCGGTHV +T EI + IVSES++ Sbjct: 633 DEAVKEGAVALFTEKYGDKVRVVKIDD-----YSMELCGGTHVKNTNEIGIFKIVSESAV 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIH 774 AG+RRIEA+TG A +L ++E LK + LK +V ++E + + + + ++ Sbjct: 688 GAGLRRIEALTGLAAIKYLEEKEEILKEASDLLKAQDKEIVSKIESLQQVLKTKDKEIEQ 747 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831 K K+ + + + ++ + ++S+V DS+ LK++ D L+ K+++ I+L + Sbjct: 748 LKIKMASILANSLINSAISLDGIKVVVSKVEDYDSEALKALGDILKDKLKTAAIVLASST 807 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889 E KA + + T+D++ + +++ + +V + G GGGRP MAQ G N +K ++A+ Sbjct: 808 PE-KAIFVGMATKDVVQK--GINMGAVIKEVCKVSEGNGGGRPDMAQGTGKNPSKVEEAL 864 Query: 890 AGVASFLKK 898 +K+ Sbjct: 865 NKAIDIVKE 873 >gi|332087414|gb|EGI92542.1| alanyl-tRNA synthetase [Shigella boydii 5216-82] Length = 784 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 351/805 (43%), Positives = 494/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFVVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMALEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S II+L ++ E K S++ V++D+ DR A +L Sbjct: 682 LVSELSGVEPKMLRTMVDDLKNQLGSTIIVLATVA-EGKVSLIAGVSKDVTDRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|315638099|ref|ZP_07893284.1| alanine--tRNA ligase [Campylobacter upsaliensis JV21] gi|315481947|gb|EFU72566.1| alanine--tRNA ligase [Campylobacter upsaliensis JV21] Length = 844 Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust. Identities = 364/899 (40%), Positives = 540/899 (60%), Gaps = 66/899 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IRT FL FF GHE+ PSS L+P +D +L+FTN+GMVPFKNIFTG+ +P T+ Q Sbjct: 3 IRTQFLNFFASKGHEITPSSPLVP-DDASLLFTNAGMVPFKNIFTGEVPRPTPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ I AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEVIAYAWEFVTEVLKLPKERL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 Y+TV+++D+EA+ LW+ + + ++I R DNFW M +TGPCGPCSEIF+DQGE Sbjct: 122 YVTVHEKDDEAYTLWQ--AHIEKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175 Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 SSE+ G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + K Sbjct: 176 EHFHSSEDYMGGDGDRFLEIWNLVFMQYERSSDGTLSPLPKPSIDTGMGLERVYAIKEGK 235 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +N+D LF LI + G Y + ++RVI DH+RSS+FL+A G+ EGRGYV Sbjct: 236 LSNFDSSLFMPLINQIASLCGRAYVYESGASYRVIADHIRSSAFLLAQGVSFDKEGRGYV 295 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LLG EP M L+ LC MG Y L + K +I+E ++ E+ERF Sbjct: 296 LRRILRRALRHGYLLGLKEPFMYKLVDVLCELMGGHYAYLNEKKEVIKEQIKLEEERFLS 355 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 T+++G+ L + L+ I +G++AFKLYDT+G PLD+ QD+L +GL+ ID F + Sbjct: 356 TIEKGIELFNEELAK--TQNIFSGEIAFKLYDTYGFPLDLTQDMLREKGLS-IDEECFER 412 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQ+ RA+A G G + L E++G +F+GY + C+ Sbjct: 413 LMSEQKERAKAAWKGSGDKAVSGDFKILLERFGKNEFVGY------------TQKACE-- 458 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S I+ + + ++ E+ GQ V D+TPFYA +GGQ+GD G +G+ Sbjct: 459 --------SQILALLDENFKMQEKLHKGQTGWVFLDKTPFYANSGGQVGDKGF-LGEN-- 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +I+D QK E I + L+ + L+ ID R Q++ +HSATHLLH+AL I Sbjct: 508 -EISDTQKFFE--LNLSKITAKNELKLDEKLLAHIDEGKREQIARHHSATHLLHYALRKI 564 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+H++Q GS + + LRFD H K +T EL+ IE+ VN++I+ + P + M+ +DA Sbjct: 565 LGAHIAQAGSLVEFNKLRFDFNHPKALTKEELEKIENLVNEMISSSYPALLEEMSLDDAK 624 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA AL KY ++VRV+S+ S LCGGTHV+++ EI +I+ ES + AG+ Sbjct: 625 KSGAIALFSEKYENKVRVLSLG------ESKELCGGTHVNNSAEIGSFFILKESGVSAGV 678 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+ + A ++ ++L+SL +++ +++ + ++ E KL K +L+ Sbjct: 679 RRIEAVVSKAAHAYAKNALKELESLK--IELKNNDLLSGISKLKNEISKL-----KNELK 731 Query: 781 -LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 N +L I V I+++++ ++K+++D + + + +I+L+ KE K S+ Sbjct: 732 NSNQNELKSENIKGVQI---CIAKIENGDIKAMIDHFKNQFEKAVILLIQ-EKEGKISLA 787 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V L A +L + A +L GG GGG+ A +GG + K D+A+ SF++K Sbjct: 788 AGVKNAPL---KAGNLVKNIAMIL-GGNGGGKDDFATAGGKDLTKIDEALKEAKSFIEK 842 >gi|323464290|gb|ADX76443.1| alanyl-tRNA synthetase [Staphylococcus pseudintermedius ED99] Length = 876 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 366/919 (39%), Positives = 527/919 (57%), Gaps = 77/919 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SDIRQMYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREVPKKPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT E ++ Sbjct: 67 QKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSERWMAMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ LW + GL+ D+IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 EKLYVTIHPEDTEAYDLWTNVVGLTEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDSAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHTYTPLPSKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++ Q+ NY+ DLF +I E ++G KY + +N V +VI DH+R+ +F I+DG Sbjct: 234 MTSISQDVRTNYETDLFMPIIGQVEAISGKKYLVDKDNDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ + M YP + + I Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLEINEPFMYQLVEIVADIMEPYYPNVKEKGDFIARV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ +E + G+ AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEEGLAILNDLIKQAKSSNETIAGEDAFKLYDTYGFPIELTEEITLNEG 413 Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 LA ID+ SFN +E QR RAR A ++ LKE ++F+GY+ Sbjct: 414 LA-IDMDSFNDHMEAQRDRARKARQSSQSMQVQSEV---LKEINTVSKFLGYEAFE---- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + IV+ GE V A +G+ + + DQTPFYA +GGQ+ Sbjct: 466 -------------------THAKITDIVRDGERVTMADAGETIHFILDQTPFYAVSGGQV 506 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +Q+T+V K G +H +V+ G +R + TID Q R + NHS Sbjct: 507 ADKGTVSNAQFEIQVTEVIKAPNGQHLHTGVVQFGEVREAAEVTATIDRQARTAIMKNHS 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + D LRFD +H P+T+ E+K +E VN+ I ++P Sbjct: 567 ATHLLHAALKKVLGEHVNQAGSLVDSDRLRFDFSHIAPMTAKEMKQVEQMVNEEIWNSIP 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + MN EDA A GA AL G KY D VRVV+++ S LCGGTHV +T EI L Sbjct: 627 VEIQEMNIEDAKAKGAMALFGEKYGDIVRVVNMQ-----PFSIELCGGTHVRNTSEIGLF 681 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI-WEE 766 I SES AG+RRIEA+TGQ A +L ++ L +K S V+ +VE++ + E Sbjct: 682 KITSESGTGAGVRRIEAVTGQNAFLYLEHYLDQFNVLKQQVKAKSDAQVIEKVEQLQYNE 741 Query: 767 YRKLQLIHAKRK----LQL-NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQK 818 Q I K K L++ N++D ++ +N MS +I+EV+ +K +++ MD + Sbjct: 742 KTLKQTIEDKNKALNELKMGNIKD----QVETINDMSVLITEVEVDNAKAMRTTMDDFKS 797 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K+Q II+L K S++ V + L DR A D+ + A V+ GG GGGRP MAQ G Sbjct: 798 KLQDSIIVLAS-DVGGKVSLIASVPKALTDRVKAGDIIKNMAPVV-GGKGGGRPDMAQGG 855 Query: 879 GPNGNKADQAIAGVASFLK 897 G K +A+ + +++K Sbjct: 856 GTEPGKITEALQFIKNYIK 874 >gi|222824071|ref|YP_002575645.1| alanyl-tRNA synthetase [Campylobacter lari RM2100] gi|222539293|gb|ACM64394.1| alanyl-tRNA synthetase [Campylobacter lari RM2100] Length = 845 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 355/888 (39%), Positives = 525/888 (59%), Gaps = 62/888 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +LEFF+ GHE+ PSS L+P +D TL+FTN+GMVPFKNIFTG+ +P T+ Q Sbjct: 3 IRKEYLEFFKSKGHEITPSSPLVP-DDATLLFTNAGMVPFKNIFTGEIPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEILKLPKERL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 Y+TV++ D+EA+ LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 122 YVTVHESDDEAYNLWQK--HIEKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGAEHFN 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER++ + + K +N+ Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSADGTLTPLPKPSIDTGMGLERVSAIKEGKFSNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF +I++ ++ G Y + ++RVI DH+RSS FL+A G+ EGRGYVLRRI Sbjct: 240 DSSLFMPIIESIAKLCGKTYIYESGASYRVIADHIRSSVFLLAQGVGFDKEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 MRRA+ + LLG M L+ +C MG Y L + K I+E ++ E+ERF T++ Sbjct: 300 MRRALRHGYLLGLKRAFMYELVDVVCELMGGHYTYLNEKKEFIKEQIKLEEERFLSTIEN 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ + + L +I +G+VAFKLYDT+G PLD+ QD+L + L+ +D FN+ ++E Sbjct: 360 GIEIFNEELKKT--KDIFSGEVAFKLYDTYGFPLDLTQDMLREKNLS-VDEAKFNELMQE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q+ RA+A G G + L EK+G F GY+ Sbjct: 417 QKDRAKASWKGSGDKAVSGDFKVLLEKFGKNTFSGYENYEEK------------------ 458 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 + I+ + + +I+ EA +G ++ ++TPFYA +GGQ D G + ++ Sbjct: 459 ----TKIIAILDENFKIITEAKAGDIAWLMLEKTPFYATSGGQSADIGFINEN----EVL 510 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 D QK + I + +++ L+T ++ ID + R Q++ +HSATHLLHHAL ILGSH Sbjct: 511 DTQKFFD-INLSQVKLKQN-LKTNDEVLACIDTKKREQIARHHSATHLLHHALREILGSH 568 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 +SQ GS + + LRFD TH K + ELK IE VN I Q I++ +A SGA Sbjct: 569 ISQAGSLVEHNKLRFDFTHPKALNKEELKQIEALVNTYIMQANEAKVEILSLNEAKKSGA 628 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 AL KY ++VRV+++ G S CGGTHV ++ EI YIV ES + AG+RRIE Sbjct: 629 IALFSEKYQEKVRVLTL----GA--SKEFCGGTHVKNSSEIGSFYIVKESGVSAGVRRIE 682 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLN 782 A+ + A ++ +E LK L +Q ++ +I KL +++ K +L+ + Sbjct: 683 AVVSKAALDYV---NENLKEL------NQAKEELKIHDILSYVAKLKNEIVSLKNELKNS 733 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 + K ++N + + + ++DS ++K+++D + K +I+L+ +EK+ ++I Sbjct: 734 SKTELSSK--ELNGIQYCVQKIDSGDIKTMIDEFKNKFNKVVILLL---QEKEGKIIIAA 788 Query: 843 -TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +D A L + A++L GG GGGR A +GG + +K +QA+ Sbjct: 789 GVKDA--SLKAGALVKEIAQML-GGNGGGRDDFATAGGKDTSKIEQAL 833 >gi|306820448|ref|ZP_07454084.1| alanine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551523|gb|EFM39478.1| alanine--tRNA ligase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 880 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 344/912 (37%), Positives = 539/912 (59%), Gaps = 61/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +FL+FF+ H + S SL+P ND +L+ N+GM P KN F G E P + + T Sbjct: 7 NDIRKSFLDFFESKEHYVKNSFSLVPKNDKSLLLINAGMAPLKNYFLGIETPPAKRMATC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR G D++N+G+T RH TFFEMLGNFSFG YFK A AW+ +TK +D+ + Sbjct: 67 QKCVRTG----DIENIGKTARHATFFEMLGNFSFGDYFKNEATAFAWEFVTKVLKMDEEK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGE-- 181 L++TVY+ED+EA ++W+ G++ D+I+++ DNFW + GPCGPCSEI+ D+GE Sbjct: 123 LWVTVYEEDDEALEIWRDKVGVNPDRIVKLGKEDNFWEIGNGQGPCGPCSEIYIDRGEEF 182 Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 C PG + +R++E WNLVF QF++Q L +IDTGMGLERMA Sbjct: 183 GCGHKDCKPGC------DCDRFLEFWNLVFTQFDKQVDGSYKKLEHPNIDTGMGLERMAC 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293 ++Q + +DID K++ +++G KY+ + V+ R+I DH+R+ +F+++DGI+P+ Sbjct: 237 IMQGVDSIFDIDTMKNIRDKVCEISGKKYQQDEKTDVSIRIITDHIRAITFMVSDGIVPS 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR+ RRAM +A+LLG + + L + Y EL Q + I + L+ Sbjct: 297 NEGRGYVLRRLARRAMRHAKLLGIEQKFIETLANVVIDVYQDGYEELGQNRDYINKVLKI 356 Query: 354 EDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+FG+T++ G+ +L+ + S + +NG AFKLYDT+G PL++ +I + + Sbjct: 357 EEEKFGETIETGMNILNQYIADSQKANNSKINGQDAFKLYDTYGFPLELTLEIAEEKNCS 416 Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +DI F +E QR RAR A + G G ++I SL T+FIGY+ L Sbjct: 417 -VDIEEFENQMEMQRQRARNARAKGSDIGWKDEIS-SLDLSVKNTEFIGYEKL------- 467 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 ED+ V+ IV G++ ++A GQ++ ++FD+TPFYAE+GGQ+GD Sbjct: 468 EDKAVIAD----------------IVIDGKLSDKAAQGQEIILIFDKTPFYAESGGQVGD 511 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG + +Q+ +V K G+F+HH + +G L+ + L +D +NR NH+AT Sbjct: 512 TGLIKNATVEIQVNNVTKSTNGLFLHHCKLNKGELKKGDKVELLVDVKNRFATMRNHTAT 571 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG H+ Q GS ++PD LRFD H ++ EL +E VN+ I + V Sbjct: 572 HLLHKALKVVLGDHIQQAGSLVSPDRLRFDFNHFAQVSKEELMKVEQLVNEQIYNAIDVQ 631 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T++M+ EDA +GA +L KY + VRV+S+ G S CGGTHV ++ EI + I Sbjct: 632 TQVMDIEDAKKTGAMSLFDEKYGETVRVLSI-----GEFSKEFCGGTHVKNSNEIGMFKI 686 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSE + +G+RRIEAITG + ++ + E +++++S LK SQ N++ R ++ E + L Sbjct: 687 VSEGGVASGVRRIEAITGYSVYNFIVEKQELIENVSSTLKTSQDNLLKRASDLMAENKNL 746 Query: 771 Q-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + A K ++ S KI DVN + +++ L+ + K+++ ++ Sbjct: 747 QKKIKEVQSAGAKTDIDSVIKSAKKINDVNLVISSFEDMEDDILRDFAQNIIDKVENSVV 806 Query: 826 MLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + ++ E +K + L +V ++L+ ++NA + + A V GG GGG+P+MA +GG + +K Sbjct: 807 VFSNVNTENQKLTFLCMVAKNLIPKYNAGKIVKEVAMVT-GGNGGGKPNMAMAGGKDVSK 865 Query: 885 ADQAIAGVASFL 896 +A++ L Sbjct: 866 IQEALSKAEEVL 877 >gi|308070327|ref|YP_003871932.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) [Paenibacillus polymyxa E681] gi|305859606|gb|ADM71394.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) [Paenibacillus polymyxa E681] Length = 877 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 362/906 (39%), Positives = 518/906 (57%), Gaps = 66/906 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ +LEFF+ GH + PS+ L+P DP+L++ N+GM P K F G+ KP + Sbjct: 4 SEIRSKWLEFFESKGHVIEPSAPLVPHKDPSLLWINAGMAPLKPYFDGRVKPENPRIANS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT K D Sbjct: 64 QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDPKWIGFDP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +TVY EDEEA+KLW + GL A++II++ DNFW + E GPCGPC+EIF+D+GE Sbjct: 120 ERLAVTVYPEDEEAYKLWNEKVGLPAERIIKL--EDNFWDIGE-GPCGPCTEIFYDRGEA 176 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LP +IDTG GLER A++ Sbjct: 177 YGSDMTDPEMYPGG--ENERYLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASI 234 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ +N+D D+F+ LIQ + + G+KY N + V +VI DH+R+ +F I DG+LP+N Sbjct: 235 LQNVDSNFDTDIFQPLIQKTAAMAGVKYNENVDSDVALKVIADHVRTVAFAIGDGVLPSN 294 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYV+RR++RRA+ Y ++LG P M L+ + MG YPE++ + I + +++E Sbjct: 295 EGRGYVIRRLLRRAVRYGKMLGMNRPYMFELVETVGDVMGVYYPEVVDKRDFIIKVIKTE 354 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL GL +L + + + +++G AFKLYDT+G P D+ +D +GL Sbjct: 355 EERFHETLTDGLAILSDISAQAKAEGRNVISGADAFKLYDTYGFPFDLTEDYADEQGLK- 413 Query: 413 IDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMK 470 +D F++A++EQR RAR AH S + + +L + ++F+GY DL+ SK + Sbjct: 414 VDREGFDEAMQEQRKRARDAHQ---DSASMKIQGGALSDLAVKSEFVGYNDLVTESKIV- 469 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 AIV + +V+ GQ +VV D TPFYAE+GGQ+ D Sbjct: 470 -----------------------AIVYEDVLVDSVSEGQSCQVVLDVTPFYAESGGQVSD 506 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G G + ++ + K +G VH +VE G L ++ +D +R ++ NH+AT Sbjct: 507 HGLLRGGTVTAKVEGLFKAPQGQHVHQVVVEAGELNVGDTVKAEVDQASRGEIEKNHTAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS + P LRFD +H IT EL IE VN I L V Sbjct: 567 HLLHKALKEVLGDHVNQAGSLVEPGRLRFDFSHFGSITPEELADIELRVNRAIWSQLDVN 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + ++A A GA AL G KY D VRVV V G +S LCGG HVS+T +I L + Sbjct: 627 IELKPIDEAKALGAMALFGEKYGDIVRVVKV-----GDYSIELCGGCHVSNTSQIGLFKL 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VSES I +G+RRIEA+TG+ ++ GQ E LK A +K V R+E + ++ + L Sbjct: 682 VSESGIGSGVRRIEAVTGRFGFEYMEGQLELLKVSAGLVKSKLSEVPKRIESLQQQIKDL 741 Query: 771 QLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSG 823 LQ + + ++ D V ++ + L+++ D L+ K+ + Sbjct: 742 S--RENESLQSKLSVIEAGQLTDQVVQAGGVQLLAARVQASSMDALRAIADELKGKLPAA 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +++L +K V+ V E +A L + A V GGGGGGRP MAQ+GG + + Sbjct: 800 VLVLGAAMDDKVNFVVAVPAEYTKAGLHAGKLVKEIAAVC-GGGGGGRPDMAQAGGKDAS 858 Query: 884 KADQAI 889 K D+A+ Sbjct: 859 KLDEAL 864 >gi|332179704|gb|AEE15393.1| alanyl-tRNA synthetase [Thermodesulfobium narugense DSM 14796] Length = 854 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 334/899 (37%), Positives = 524/899 (58%), Gaps = 60/899 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL +F++ GH +LPS SL+P DPT++FT +GMVPFK F G+E+P ++ TT QK Sbjct: 6 IRRLFLNYFKERGHTVLPSFSLVP-EDPTILFTIAGMVPFKPYFLGREEPPFKRATTSQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++ VG+T RHHTFFEMLGNFSFG YFKE+AI AW +T+ L + RL+ Sbjct: 65 CLRT----NDIEEVGKTARHHTFFEMLGNFSFGDYFKEKAIPFAWVFVTEVLHLQKERLF 120 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 IT+Y +D+E++++W+ + + A+KI R DNFWS GPCGPCSEI++D+GE Sbjct: 121 ITIYKDDDESYEIWRSLD-IPAEKIYRSGEKDNFWSAGPVGPCGPCSEIYYDRGENFGCK 179 Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P S + +R++EIWNLVFMQ+ + + +L K IDTGMGLER+A+VLQ K +NY Sbjct: 180 RPDCSPLCDCDRFLEIWNLVFMQYNRDEESNLTLLSKKGIDTGMGLERIASVLQGKDSNY 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 + DL +I+ +TG++Y+G I+ RV+ DHLR + F I+DG+LP+NEGRGYV+RR+ Sbjct: 240 ETDLIYPIIEKLSSITGIEYKGKGIIPLRVMSDHLRGAVFAISDGVLPSNEGRGYVVRRL 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ ++ L GY P + +P + +YPEL + K I + +RSE+E+F ++L Sbjct: 300 LRRALTFSHLSGYQTPFIYKAVPTVSNIYRHSYPELFEKKDYIIDAIRSEEEKFSQSLKD 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 GL + + ++ + KD I++G++AF LYDT+G P+++ ++ + A G+DI FN+ L + Sbjct: 360 GLSMFNKLMPQIKKDGIISGEIAFLLYDTYGFPVELTKE-MAAEFNIGVDIEGFNELLMQ 418 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 +++ +R S + T ++F+GYD L K + K+L Sbjct: 419 RKNLSRQGSQFVDEIITTSF---------TSEFVGYDNL------KTNSKIL-------- 455 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 I + V ++G++ ++ ++TPFY E+GGQ+ D G + + ++T Sbjct: 456 ---------GIYKNNNEVRSLLAGEEGYIILNKTPFYPESGGQVSDIGYIVSENSTFRVT 506 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 VQ++ + IF H VE G + ID + RR S NH+ TH+LH L G Sbjct: 507 SVQREKDAIF-HFGKVESGSFCAGDYVEAEIDIKRRRLSSSNHTCTHILHAVLREKFGET 565 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 V Q GS ++ + LRFD S ++ ++ IE +VN II +N V+ + M+ EDAI SGA Sbjct: 566 VKQKGSFVSDELLRFDF-FSNALSDEDIADIERSVNKIIMENFKVIVQEMDLEDAIKSGA 624 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 AL KY RVRVVS++ SS LCGGTHV TGEI IV + SI + +RRIE Sbjct: 625 IALFSDKYKSRVRVVSID-----SVSSELCGGTHVKMTGEIGTFVIVKQESIASSVRRIE 679 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQG------NVVGRVEEIWEEYRKLQLIHAKRK 778 A TG +A + + + L + L S +++ +E + R++ + + Sbjct: 680 AFTGLKALKYFQQKRKDLDEIDKILDASGSPLKKSLSILKDFDETKKRLREVTMNY---- 735 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 L++ +L+ +I + S + S+++ +D + + + I+ + ++ + AS Sbjct: 736 LRMKANNLTVEEIGKFSLYSENLDGFASEDMLFFVDLARNRFDNLILFIYSVNNQ-SASF 794 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 ++ +++ L +A +LA++ V GGG GGR ++Q G N NK + AI + FLK Sbjct: 795 VLSISDKLSQSLSAKELAKVITSVT-GGGAGGRDKVSQGGIKNINKLNSAIIALKDFLK 852 >gi|312135147|ref|YP_004002485.1| alanyl-tRNA synthetase [Caldicellulosiruptor owensensis OL] gi|311775198|gb|ADQ04685.1| alanyl-tRNA synthetase [Caldicellulosiruptor owensensis OL] Length = 879 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 349/905 (38%), Positives = 530/905 (58%), Gaps = 52/905 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + +TT QK Sbjct: 6 IREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRITTCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L + RL+ Sbjct: 66 CIRTP----DIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPRERLW 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +T+Y+ED+EAF++W K GL +I R+ DNFW + TGPCGPCSEI+FD+GE G Sbjct: 122 VTIYEEDDEAFEIWHKEVGLEPQRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEDKGCG 180 Query: 187 LP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P G + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE + + Sbjct: 181 KPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEVDSLF 240 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DID+ K + +VT +Y + V+ RVI DH+R F+I DGILP+NEGRGYVLR Sbjct: 241 DIDIVKAIRDKVCEVTSYEYRKDTEKDVSVRVITDHIRGIVFMIGDGILPSNEGRGYVLR 300 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RRA + R+LG E + ++ + ++YPEL+Q I++ L +E+ RF +T+ Sbjct: 301 RLIRRASRHGRMLGKKEAFLHLIVDTVIESYKNSYPELVQKVEYIKKVLYNEESRFNQTI 360 Query: 363 DRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 D GL +L+ + L K++ ILNG++AFK+YDT+G PLD+ ++I +G+ +D F++ Sbjct: 361 DVGLEILENEIEKLKKNKETILNGEIAFKMYDTYGFPLDLTKEIAAEKGII-VDQERFDE 419 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +++Q+ RARA L + + I + E T F+GY+ L K++ K+L Sbjct: 420 LMQQQKERARAAQKELENVGWKDINIVIDEDI-ETVFVGYETL------KQESKIL---- 468 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 I + E V A V+ D+TPFYAE+GGQ+ D G G+G+ Sbjct: 469 -------------KIFMESEEVAYAKEEDVCFVILDKTPFYAESGGQIADKGILEGEGVL 515 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ DV+K +G +H V +G + S+V +D R NH+ATHLLH AL I Sbjct: 516 AEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVDEDLRFATMKNHTATHLLHSALRKI 575 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG H Q+GS ++PD LRFD H +P++ ++ IE VN++I Q +PV + + + A+ Sbjct: 576 LGQHAQQSGSQVSPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTDLDSAL 635 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL KY++ VRV+ ++ S LCGGTHV +TG+I + I+SESS+ AG+ Sbjct: 636 RMGAIALFDEKYSNLVRVIKIDD-----FSMELCGGTHVDNTGQIGMFKIISESSVAAGV 690 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHAKRKL 779 RRIEAITG + ++ + LK L S +K S +V ++E++ + + L+ K KL Sbjct: 691 RRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIVSKIEQLENKIKNLENEVEKYKL 750 Query: 780 QLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGISKEK 834 + +LS K D I++ ++ ++ K + D ++++ I++ + + + Sbjct: 751 LVVENELSLLFSKAIDYGEFKLIVNRKETDDMDYVKLLTDKIKERDSKAIVLNI-LEQGN 809 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K +VL+ +++ + + VD ++ +V GG GGGRP AQ GG + K D A+ Sbjct: 810 KVTVLMSCSKEAVKK--GVDCGKVVREVCSVVGGKGGGRPDFAQGGGNDILKIDIAVQTA 867 Query: 893 ASFLK 897 + LK Sbjct: 868 ENILK 872 >gi|325290063|ref|YP_004266244.1| alanyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271] gi|324965464|gb|ADY56243.1| alanyl-tRNA synthetase [Syntrophobotulus glycolicus DSM 8271] Length = 875 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 346/910 (38%), Positives = 527/910 (57%), Gaps = 52/910 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R FL FFQ+ GH L S+SLIP NDPTL+ T +GMVPFK F Q +P + Sbjct: 1 MYTGDQLREMFLNFFQEKGHRLQASASLIPKNDPTLLLTVAGMVPFKPYFMRQVEPPFPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVR DL+ VG+T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ L Sbjct: 61 ATTCQKCVRT----PDLERVGKTARHHTFFEMLGNFSFGDYFKEEAITWAWEYVTEVIKL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L+ITV+ ED EA ++W +G+S D+++ +NFW+ GPCGPCSEI+ D G Sbjct: 117 PADQLWITVHPEDHEAREIWINKAGVSPDRLL--DDEENFWAAGPVGPCGPCSEIYVDLG 174 Query: 181 ECIPGGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + + +R++EIWNLVFMQ+ + LP+ +IDTGMGLER+ +V+Q Sbjct: 175 EARGCGKPDCAIGCDCDRFLEIWNLVFMQYTRDESGTLTPLPRQNIDTGMGLERITSVMQ 234 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEG 296 +N+D DLF +I ++ G+ Y+ + + +VI DH R+ +F++ DGI P+++G Sbjct: 235 GVVSNFDTDLFIPIINKIAEIAGINYKDDPKKDTALKVISDHTRAIAFMLGDGIRPSSDG 294 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ YARL+G +P + + + ++ AYPEL + + I L+ E++ Sbjct: 295 RGYVLRRILRRAVRYARLIGIEKPFLEQIFAVIQSKYAHAYPELKENENFILNHLKLEEK 354 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F TL++G +L + L K + +NG AF LY+T+G P+++ ++IL G+ +D Sbjct: 355 NFQATLEQGTQILQDKVESLKKQGLQEINGTDAFHLYETYGFPVELTEEILAEEGIT-VD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + ++ A EE R A+ S + S + + G T+F+GY L F Sbjct: 414 MENYQLAFEEHRKAAKEQSRQMVSSAENMALINKARELGKTEFVGYRQLSTETF------ 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+ E V A G++V + +TPFYAE+GGQ+ D G Sbjct: 468 -----------------VAALFSGEEEVASAGEGEEVLCLLPRTPFYAESGGQVADKGWI 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + Q+ +V+K +G F H + G+L+ + ++V +D + R+ ++ +HS+THLLH Sbjct: 511 RSERAEAQVMEVRKLPDGSFCHRLRITSGVLKVQDTVVAEVDGEIRKSIAAHHSSTHLLH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS ++ + LRFD +H +++ EL ++E+ +N I L V M Sbjct: 571 TALRKVLGQHVQQAGSLVSEERLRFDFSHFSAMSTEELNTVEEEINRQIRGALSVNIAEM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 EDA A GA AL G KY D VRVV + G S+ LCGGTHV +TGEI ++ I+SES Sbjct: 631 CMEDAKAQGAIALFGEKYGDEVRVVRM-----GEFSTELCGGTHVQNTGEIGIVKILSES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-------QGNVVGRVEEIWEEY 767 I AG+RRIEA+ G++A +++ +E L+ +A LK + G + G++++ E Sbjct: 686 GIGAGLRRIEAVAGKQALAYIHSLEESLEEIAVILKAAPGESLKKAGQMAGQLKDAEREI 745 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 KL +K + + N+ D +I V ++ + D L+ + D L+ +++ G+I+L Sbjct: 746 EKLNARLSKYEAE-NILD-KVQEIQGVKVLAAKVQAPDMDALRKMSDTLKDRLKEGVIIL 803 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G S E K + VV+ L+ +A + + A GG GGGRP MAQ+GG + +K ++ Sbjct: 804 -GASAEGKVHFVSVVSPSGLNGLHAGKIIKEVA-AFTGGSGGGRPDMAQAGGKDPSKIEE 861 Query: 888 AIAGVASFLK 897 A+A V + +K Sbjct: 862 ALAKVPAIIK 871 >gi|57506111|ref|ZP_00372033.1| alanyl-tRNA synthetase [Campylobacter upsaliensis RM3195] gi|57015595|gb|EAL52387.1| alanyl-tRNA synthetase [Campylobacter upsaliensis RM3195] Length = 844 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 362/898 (40%), Positives = 538/898 (59%), Gaps = 64/898 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL FF GHE+ PSS L+P +D +L+FTN+GMVPFKNIFTG+ +P T+ Q Sbjct: 3 IRAQFLNFFASKGHEITPSSPLVP-DDASLLFTNAGMVPFKNIFTGEVPRPTPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ I AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEVIAYAWEFVTEVLKLPKERL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 Y+TV+++D+EA+ LW+ + + ++I R DNFW M +TGPCGPCSEIF+DQGE Sbjct: 122 YVTVHEKDDEAYTLWQ--AHIEKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175 Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 SSE+ G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + K Sbjct: 176 EHFHSSEDYMGGDGDRFLEIWNLVFMQYERSSNGTLSPLPKPSIDTGMGLERVYAIKEGK 235 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +N+D LF LI + G Y + ++RVI DH+RSS+FL+A G+ EGRGYV Sbjct: 236 LSNFDSSLFMPLINQIASLCGRAYVYESGASYRVIADHIRSSAFLLAQGVSFDKEGRGYV 295 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LLG EP M L+ LC MG Y L + K I+E ++ E+ERF Sbjct: 296 LRRILRRALRHGYLLGLKEPFMYKLVDVLCELMGGHYAYLNEKKEAIKEQIKLEEERFLS 355 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 T+++G+ L + L+ I +G++AFKLYDT+G PLD+ QD+L +GL+ ID F + Sbjct: 356 TIEKGIELFNEELAKT--QNIFSGEIAFKLYDTYGFPLDLTQDMLREKGLS-IDEECFER 412 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQ+ RA+A G G + L E++G +F+GY + C+ Sbjct: 413 LMSEQKERAKAAWKGSGDKVVSGDFKILLERFGKNEFVGY------------TQKACE-- 458 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S I+ + + ++ E+ +GQ V D+TPFYA +GGQ+GD G +G+ Sbjct: 459 --------SQILALLDENFKMQEKLHNGQTGWVFLDKTPFYANSGGQVGDKGF-LGEN-- 507 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +I+D QK E I + L+ + L+ ID R Q++ +HSATHLLH+AL I Sbjct: 508 -EISDTQKFFE--LNLSKITAKNELKLDEKLLAHIDEDKREQIARHHSATHLLHYALRKI 564 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+H++Q GS + + LRFD H K +T EL+ IE+ VN++I+ + P + M+ +DA Sbjct: 565 LGTHIAQAGSLVEFNKLRFDFNHPKALTKEELEKIENLVNEMISSSYPALLEEMSLDDAK 624 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA AL KY +VRV+S+ S LCGGTHV+++ EI +I+ ES + AG+ Sbjct: 625 KSGAIALFSEKYESKVRVLSLG------ESKELCGGTHVNNSAEIGSFFILKESGVSAGV 678 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+ + A ++ ++L+SL +++ +++ + ++ E KL K + Sbjct: 679 RRIEAVVSKAAHTYAKNALKELESLK--IELKNNDLLSGISKLKNEISKL-------KNE 729 Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 L + + K +V + I++V++ ++K+++D + + + +I+L+ KE K S+ Sbjct: 730 LKNSNQNELKSENVKGVQICIAKVENGDIKAMIDHFKNQFEKAVILLIQ-EKEGKISLAA 788 Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V L A +L + A +L GG GGG+ A +GG + K D+A+ SF++K Sbjct: 789 GVKNAPL---KAGNLVKNIAMIL-GGNGGGKDDFATAGGKDLTKIDEALKEAKSFIEK 842 >gi|261405443|ref|YP_003241684.1| alanyl-tRNA synthetase [Paenibacillus sp. Y412MC10] gi|261281906|gb|ACX63877.1| alanyl-tRNA synthetase [Paenibacillus sp. Y412MC10] Length = 875 Score = 612 bits (1578), Expect = e-173, Method: Compositional matrix adjust. Identities = 359/907 (39%), Positives = 524/907 (57%), Gaps = 68/907 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K F G+ KP + Sbjct: 4 SEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRIANS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT K D Sbjct: 64 QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIGFDP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TVY EDEEA+KLW + GL ++II++ DNFW + E GPCGPC+EIF+D+GE Sbjct: 120 EKLSVTVYPEDEEAYKLWNEKIGLPKERIIKL--QDNFWDIGE-GPCGPCTEIFYDRGEG 176 Query: 183 IPGGLPGSS----EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 P S E ER++E+WNLVF QF LP +IDTG GLER A++LQ Sbjct: 177 YDTEAPESEMFPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQ 236 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D DLF+ +IQ + ++ G+KY + +VI DH+R+ +F + DG+LP+NEG Sbjct: 237 NVASNFDTDLFQPIIQKTAELAGVKYNEKTEYDIALKVIADHIRTVAFAVGDGVLPSNEG 296 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYV+RR++RRA+ Y ++LG +P M L + MG YPE+++ + IE+ + +E+E Sbjct: 297 RGYVIRRLLRRAVRYGKVLGLDKPFMYTLTGTVGDIMGVYYPEVVEKRAFIEKVIATEEE 356 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F KTL GL +L V + K +++G+ AFKLYDT+G P D+ +D GL +D Sbjct: 357 QFHKTLSDGLNILADVSAEAKKQGKSVISGNDAFKLYDTYGFPFDLTEDYASEHGLT-VD 415 Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKF 468 F+ A++EQR RARA S+ + G +++K ++F+GY D + +K Sbjct: 416 REGFDAAMKEQRDRARAARHETESMKVQGGVLSD--YTVK-----SEFVGYNDTVSEAKV 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + AIV + G+ +V+ D TPFYAE+GGQ+ Sbjct: 469 L------------------------AIVSGDSFADSVSEGETCQVILDVTPFYAESGGQV 504 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G G +R ++ + K G VH VE G L+ ++ +D R + NH+ Sbjct: 505 SDQGMLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVKAQVDSAMRNDIVKNHT 564 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + P LRFD +H IT EL IE VN+ + +++P Sbjct: 565 ATHLLHKALKEVLGEHVNQAGSLVEPQRLRFDFSHFGSITQEELADIERRVNEQVWKSVP 624 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV ++A A GA AL G KY D VRVV V G +S LCGG HV +T +I + Sbjct: 625 VVIERKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVDNTSQIGIF 679 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++ ES I +G+RRIEA+TG+ A HL GQ + LK A LK + +V R+E + ++ + Sbjct: 680 KLLGESGIGSGVRRIEAVTGRYAYEHLEGQMDLLKQAAGLLKSNLADVPKRIEGLNQQVK 739 Query: 769 KLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSG 823 L + + +L + S K+ V S + +EV + L+ + D L+ K+ Sbjct: 740 DLARENESLQGKLGAIEASQLTDKVKQVGNTSLLAAEVQAGSMDGLRGIADELKGKLPET 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L G K + ++ V ++L+ + ++A L + A V GGGGGGRP MAQ+GG + Sbjct: 800 ILVL-GSKAGDKVNFVVAVPQELVKQGYHAGKLVKEVASVC-GGGGGGRPDMAQAGGKDA 857 Query: 883 NKADQAI 889 +K QA+ Sbjct: 858 SKLAQAL 864 >gi|312622432|ref|YP_004024045.1| alanyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002] gi|312202899|gb|ADQ46226.1| alanyl-tRNA synthetase [Caldicellulosiruptor kronotskyensis 2002] Length = 883 Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust. Identities = 355/909 (39%), Positives = 536/909 (58%), Gaps = 52/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + +T Sbjct: 4 STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L + Sbjct: 64 TCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL++T+Y+ED+EAF++W K GL D+I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEE 178 Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P G + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 179 KGCGRPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +DID+ K + +VTG Y + V+ RVI DH+R + F+I DGILP+NEGRG Sbjct: 239 DSLFDIDIVKAIRDKVCEVTGYDYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + R+L E + ++ + + YPEL+Q I++ L +E+ RF Sbjct: 299 YVLRRLIRRAARHGRMLDKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESRF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D GL +L+ + L K++ +LNG++AFK+YDT+G PLD+ ++I +G+ ID Sbjct: 359 NQTIDVGLEILESEIEKLKKNKETVLNGEIAFKMYDTYGFPLDLTKEIAAEKGII-IDQE 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ +++Q+ RARA L + + I + E T F+GYD L K++ K+L Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTL------KQEAKIL 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 I L N ++ K EE V V+ D+TPFYAE+GGQ+ D G G Sbjct: 471 ----KIFLDNEETAYAK---------EEDVCF----VILDKTPFYAESGGQVADKGILEG 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G+ ++ DV+K G +H V +G + S+V +D + R NH+ATHLLH A Sbjct: 514 EGVLAEVLDVKKGPRGTILHKVKVLKGEITVLSSVVAKVDEELRLATMKNHTATHLLHSA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG H Q+GS +TPD LRFD H +P++ +L IE +N+II Q +PV + + Sbjct: 574 LRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQLIEIEKMINNIIQQAIPVEKIVTDL 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS+ Sbjct: 634 DSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775 AG+RRIEAITG + ++ + LK L S +K S ++ ++E++ + + L++ Sbjct: 689 AAGVRRIEAITGNKVYGFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLEVEIE 748 Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGI 830 K KL + +LS K D I++ + ++ K + D ++++ I++ + + Sbjct: 749 KYKLLVVENELSSLFGKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKERDSKAIVLNI-L 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888 + K +VL+ +++ + + VD ++ ++ GG GGGRP AQ GG + +K D A Sbjct: 808 EQSSKVTVLMSCSKEAVKK--GVDCGKVVKEICSVLGGKGGGRPDFAQGGGNDISKIDMA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 LQTAENILK 874 >gi|297620478|ref|YP_003708615.1| Alanyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044] gi|297375779|gb|ADI37609.1| Alanyl-tRNA synthetase [Waddlia chondrophila WSU 86-1044] Length = 870 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 353/906 (38%), Positives = 524/906 (57%), Gaps = 51/906 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N IR F+ +F++NGH +PSS ++P +DPTL+F N+GM FK+IF G+ Y+ Sbjct: 2 NTQEIRRKFINYFRENGHTHVPSSPILPHDDPTLLFINAGMNQFKDIFLGKSVRDYKRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R GGKHNDL+NVG T RH TFFEMLGNFSFG YFK+ AI+ AW++ T F+LD Sbjct: 62 TSQKCIRVGGKHNDLENVGHTLRHLTFFEMLGNFSFGDYFKKEAIRFAWEVSTTVFELDP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 R++ TV+ ED+EA+++WK+ + +KI R NFWSM +TGPCGPCSE+ +D+G Sbjct: 122 ERIWPTVFREDDEAYEIWKEY--VPEEKITRFDEKQNFWSMGDTGPCGPCSELLYDRGPK 179 Query: 183 IPGG-LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 P E+ ERY+E WNLVFMQ+ + + LPK SIDTG GLER+ ++ + Sbjct: 180 YGNAKTPLEDEKEERYMEFWNLVFMQYNRDEEGVMHPLPKPSIDTGSGLERVVSIKMDVE 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + YD D+ + LI E+++G+ Y+G + RVI DH+R +F IADG+ P+N RG Sbjct: 240 SVYDTDVLRALITRVEEISGIGYDGADKEKAPAFRVIADHIRCLAFAIADGVQPSNVDRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLR+++RRA+ Y R+LG P + L+P L MGS YPEL Q++ I E L +E+E F Sbjct: 300 YVLRKVLRRAVRYGRMLGLDRPFLADLVPLLIELMGSDYPELKQSENRIGEILTTEEENF 359 Query: 359 GKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TL RG +L+ ++ K+ + G+ AFKL DT+G PL+ + I L +D Sbjct: 360 IRTLRRGGNILNQIIDEAKKEHRQITGEEAFKLKDTYGFPLEEILLIALDDELE-VDTKR 418 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + EE + R+R +E ++ E + + +F+GY+ Sbjct: 419 FIELEEEAKERSRKTRKSTQQLASENLF----EGFASCEFLGYE---------------- 458 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 V AI+ V++ +GQ+ +V D+TPFYAE GGQ+GD G G+ Sbjct: 459 -------ETEAEGKVAAIIVDNAFVDQLEAGQEGMIVLDRTPFYAEKGGQVGDKGLLTGE 511 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++D Q +GI H +ERG +R + L+ +D + R+ ++ +H+ATHLLH AL Sbjct: 512 NSLFHVSDCQSPYKGIIAHLGKLERGAIRLKDPLMARVDLERRQSIANHHTATHLLHWAL 571 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q GS + PD LRFD +H K +T E++ IED VN I +N+ V + ++ E Sbjct: 572 CKVLGDHVKQAGSVVAPDRLRFDFSHHKGLTQKEIRDIEDLVNAKIRENIAVKSYELSYE 631 Query: 658 DAIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +AI G KY++ VRV+ ++Y S LCGGTHV G I L I E SI Sbjct: 632 EAIQREEIKQFFGDKYDNIVRVIDIDY------SKELCGGTHVKQLGSIGLFRIAKEGSI 685 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-QLIHA 775 AG+RRIEA+TG A ++ L S+A LK ++ R+ + EE ++L Q + Sbjct: 686 AAGVRRIEAVTGSWAEQRSREEENLLLSIADSLKTQPQKLIQRINSLLEENKELAQELKT 745 Query: 776 KRKLQLN--VEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGIS 831 + L V DL +K +V + I EV S E++ + D ++SG+++L S Sbjct: 746 LKSAHLKNIVADL-INKAEEVQGIRFIAQEVALSSDEMRQLADDAVNALESGVVVLAA-S 803 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + + ++ V++D++D+ A DL + A ++ GGGGGG+ H AQ+GG K QA++ Sbjct: 804 LDGRCQLMARVSDDMIDKGIKASDLIKTLAPII-GGGGGGKAHFAQAGGKTPEKISQALS 862 Query: 891 GVASFL 896 V + L Sbjct: 863 TVRTLL 868 >gi|223039439|ref|ZP_03609727.1| alanyl-tRNA synthetase [Campylobacter rectus RM3267] gi|222879235|gb|EEF14328.1| alanyl-tRNA synthetase [Campylobacter rectus RM3267] Length = 849 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 356/883 (40%), Positives = 532/883 (60%), Gaps = 65/883 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L FF GHE++PS+ L+P ND TL+FTN+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IREAYLNFFASKGHEIIPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPPIRTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKRDAIAYAWEFVTQALKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180 Y+TV++ D+EAF LW++ ++ ++I R +DNFW M +TGPCGPCSEIF+DQG Sbjct: 122 YVTVHERDDEAFALWEQ--HIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQGGEHFN 179 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E GG +G+R++EIWNLVFMQ+E+ + + LPK SIDTGMGLER+ +++ Sbjct: 180 TPEDYMGG------DGDRFLEIWNLVFMQYERSSDGKLTPLPKPSIDTGMGLERVTAIME 233 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K +NYD LF LI+ + G Y + ++RVI DH+RS +FL+A G EGRG Sbjct: 234 GKFSNYDSSLFMPLIEEVAALCGKPYAYESGASYRVISDHIRSVTFLLAQGTTFDKEGRG 293 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LLG EP M L+ +C MG Y L + K ++E ++ E+ERF Sbjct: 294 YVLRRILRRAIRHGYLLGIKEPFMYRLVDKVCELMGGHYAYLNEKKAAVKEQIKLEEERF 353 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+ GL L + L+ +I +G+ AFKLYDT G PLD+ D+L +GL +D F Sbjct: 354 LATIASGLELFESELTRT--KDIFSGEAAFKLYDTFGFPLDLTADMLREKGLK-VDEAKF 410 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++ + EQ++RA+A G G + + + +L EK+G +F GY+ L Sbjct: 411 DELMSEQKARAKAAWKGSGDKSAKGDFKALLEKFGENEFSGYEEL--------------- 455 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + T+ V +++ ++ +I++ +G++ +FD TPFYA++GGQ GD+G G Sbjct: 456 ----ERTSKVLALLDEDFKETQILK---AGEQGWAMFDVTPFYAQSGGQAGDSGEVAGAA 508 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + D QK G+ + + V++ L+ ++ L + Q R +++ +HSATHLLH AL Sbjct: 509 ---DVLDTQKFF-GLSLSNVTVKKE-LKIGDTVKLKVSEQ-RAEIARHHSATHLLHSALR 562 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ++LG+H++Q GS + LRFD +H K +T+ EL IE+ VN I++N+ T IM+ ED Sbjct: 563 SVLGTHIAQAGSSVEASRLRFDFSHPKAVTAEELTKIENFVNAAISENIEAKTEIMDIED 622 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A SGA AL G KY D+VRV+S G S LCGGTHVS+ +I +I E + A Sbjct: 623 AKNSGAIALFGEKYADKVRVLSF-----GEVSKELCGGTHVSNLSQIGAFFITKEGGVSA 677 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+ + A + +++ L + LK ++ +G V+++ E + L+ K K Sbjct: 678 GVRRIEAVCSKAALNLAKAWRSEIEELKTELKSTE--PIGAVKKLKAEIKSLK---DKAK 732 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 N L+C +VN ++ +D ++K+ +D + + + I+LV +++E K ++ Sbjct: 733 QAKNAHALAC---VNVNETKLCVAVLDGGDIKATIDEFKNENEKAAILLVQVNEEGKIAL 789 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 V L A + + +A++L GG GGG+ A +GG N Sbjct: 790 AAGVKNAAL---KAGEWVKFTAQIL-GGNGGGKDDFATAGGKN 828 >gi|312793514|ref|YP_004026437.1| alanyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180654|gb|ADQ40824.1| alanyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 883 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 355/909 (39%), Positives = 539/909 (59%), Gaps = 52/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + +T Sbjct: 4 STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L + Sbjct: 64 TCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL++T+Y+ED+EAF++W K GL D+I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEE 178 Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P G + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 179 KGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +DID+ K + +VT +Y + V+ RVI DH+R + F+I DGILP+NEGRG Sbjct: 239 DSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + R+LG E + ++ + + YPEL+Q I++ L +E+ RF Sbjct: 299 YVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESRF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D GL +L+ + L K++ ILNG++AF++YDT+G PLD+ ++I +G+ +D Sbjct: 359 NQTIDVGLEILESEIEKLKKNKEIILNGEIAFRMYDTYGFPLDLTKEIAAEKGII-VDQE 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ +++Q+ RARA L + + I + E T F+GYD L ++D K+L Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTL------EQDAKIL 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 I L N ++ VK EE V V+ D+TPFYAE+GGQ+ D G G Sbjct: 471 ----KIFLDNEETAYVK---------EEDVCF----VILDKTPFYAESGGQVADKGILEG 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G+ ++ DV+K +G +H V +G + S+V ++ + R NH+ATHLLH A Sbjct: 514 EGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVNEELRLATMKNHTATHLLHSA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG H Q+GS +TPD LRFD H +P++ ++ IE VN++I Q +PV + + Sbjct: 574 LRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTDL 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS+ Sbjct: 634 DSALKMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775 AG+RRIEAITG +A ++ + LK L S +K S ++ ++E++ + L+ Sbjct: 689 AAGVRRIEAITGNKAYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENTIKALENEVE 748 Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGI 830 K KL + +LS K D I++ ++ ++ K + D ++++ I++ + I Sbjct: 749 KYKLLVVENELSSLFGKAVDYGEFKLIVNRKETDDMDYVKLLTDKIKERDSKAIVLNI-I 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888 + K ++L+ +++ + + VD ++ +V GG GGGRP AQ GG + +K D A Sbjct: 808 QQGSKVTILMSCSKEAVKK--GVDCGKVVKEVCSVLGGKGGGRPDFAQGGGNDISKIDMA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 LQTAENILK 874 >gi|329926749|ref|ZP_08281157.1| alanine--tRNA ligase [Paenibacillus sp. HGF5] gi|328938949|gb|EGG35317.1| alanine--tRNA ligase [Paenibacillus sp. HGF5] Length = 875 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 359/907 (39%), Positives = 523/907 (57%), Gaps = 68/907 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ +LEFF + GH + PS+SL+P NDP+L++ N+GM P K F G+ KP + Sbjct: 4 SEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRIANS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE I AW+ LT K D Sbjct: 64 QKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIGFDP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TVY EDEEA+KLW + GL ++II++ DNFW + E GPCGPC+EIF+D+GE Sbjct: 120 EKLSVTVYPEDEEAYKLWNEKIGLPKERIIKL--QDNFWDIGE-GPCGPCTEIFYDRGEG 176 Query: 183 IPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 P S E ER++E+WNLVF QF LP +IDTG GLER A++LQ Sbjct: 177 YDTEAPESEMFPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQ 236 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D DLF+ +IQ + ++ G+KY + +VI DH+R+ +F + DG+LP+NEG Sbjct: 237 NVASNFDTDLFQPIIQKTAELAGVKYNEKTEYDIALKVIADHIRTVAFAVGDGVLPSNEG 296 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYV+RR++RRA+ Y ++LG +P M L + MG YPE+++ + IE+ + +E+E Sbjct: 297 RGYVIRRLLRRAVRYGKVLGLDKPFMYTLTGTVGDIMGVYYPEVVEKRAFIEKVIATEEE 356 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F KTL GL +L V + K +++G AFKLYDT+G P D+ +D GL +D Sbjct: 357 QFHKTLSDGLNILADVSAEAKKQGKSVISGSDAFKLYDTYGFPFDLTEDYASEHGLT-VD 415 Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKF 468 F+ A++EQR RARA S+ + G +++K ++F+GY D + +K Sbjct: 416 REGFDAAMKEQRDRARAARHETESMKVQGGVLSD--YTVK-----SEFVGYNDTVSEAKV 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + AIV + G+ +V+ D TPFYAE+GGQ+ Sbjct: 469 L------------------------AIVSGDSFADSVSEGETCQVILDVTPFYAESGGQV 504 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G G +R ++ + K G VH VE G L+ ++ +D R + NH+ Sbjct: 505 SDQGMLEGGSVRARVEGLFKAPHGQHVHFVTVELGELKVGDTVKAQVDTAMRNDIVKNHT 564 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + P LRFD +H IT EL IE VN+ + +++P Sbjct: 565 ATHLLHKALKEVLGDHVNQAGSLVEPQRLRFDFSHFGSITQEELADIERRVNEQVWKSVP 624 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VV ++A A GA AL G KY D VRVV V G +S LCGG HV +T +I + Sbjct: 625 VVIERKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVDNTSQIGIF 679 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++ ES I +G+RRIEA+TG+ A HL GQ + LK A LK + +V R+E + ++ + Sbjct: 680 KLLGESGIGSGVRRIEAVTGRYAYEHLEGQMDLLKQAAGLLKSNLADVPKRIEGLNQQVK 739 Query: 769 KLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSG 823 L + + +L + S K+ V S + +EV + L+ + D L+ K+ Sbjct: 740 DLARENESLQGKLGAIEASQLTDKVKQVGNTSLLAAEVQAGSMDGLRGIADELKGKLPET 799 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++L G K + ++ V ++L+ + ++A L + A V GGGGGGRP MAQ+GG + Sbjct: 800 ILVL-GSKAGDKVNFVVAVPQELVKQGYHAGKLVKEVASVC-GGGGGGRPDMAQAGGKDA 857 Query: 883 NKADQAI 889 +K QA+ Sbjct: 858 SKLAQAL 864 >gi|311031558|ref|ZP_07709648.1| alanyl-tRNA synthetase [Bacillus sp. m3-13] Length = 877 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 366/916 (39%), Positives = 545/916 (59%), Gaps = 70/916 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AQVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPANPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT E + Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGEYFKKEAIDWAWEFLTSEKWIGFEA 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +T++ EDEEA+K W ++ G+ A++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 EKLSVTIHPEDEEAYKYWNEVIGVPAERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGES 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+EIWNLVF +F LPK +IDTGMGLERM +V Sbjct: 180 YGNDLNDPELYPGG--ENERYLEIWNLVFSEFNHNPDHTYTPLPKKNIDTGMGLERMVSV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ N+D DLF +I+A+E V+G KY N +VI DH+R+ +F + DG LP+N Sbjct: 238 IQDVPTNFDTDLFIPIIEATENVSGEKYRTNVEKDTAFKVIADHIRTVTFAVGDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ LG P M L+P + M YPE+ + + I+ +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKQLGINRPFMYELVPVVAEIMVDFYPEVKEKQDFIQRVVKTE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL+ GL +L V++ +D +++G AF+LYDT+G P+++ ++ + +G+ Sbjct: 358 EERFHETLNDGLAILSTVIAKAKEDGSTVVSGSDAFRLYDTYGFPVELTEEYVEEQGMT- 416 Query: 413 IDIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +D F + +E QR RAR+ +S+ + SG L E + F+GYD L Sbjct: 417 LDHEGFEKEMEMQRDRARSARQDSNSMQVQSGV-------LGEIRTESSFVGYDQLTAE- 468 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + + IV+ GE+ + AV+G +V+V+ +TPFYAE+GGQ Sbjct: 469 ----------------------TTLSIIVKNGELADSAVTGDEVQVILAETPFYAESGGQ 506 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + + R + DVQK G +H +VE G+L E ++ + +NR Q+ NH Sbjct: 507 IADHGYIVTESGRGFVKDVQKAPNGQNLHTIVVEEGVLNREQAVKAEVHAKNRAQIIKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATH+LH AL +LG+HV+Q GS +T D LRFD +H +T E++ IE VN+ I ++ Sbjct: 567 TATHILHQALKDVLGTHVNQAGSQVTADRLRFDFSHFGQVTQEEIEKIEAIVNEKIWASI 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 VV + +A A GA AL G KY D VRVV V G +S LCGG HV +T EI L Sbjct: 627 NVVIENKSISEAKAMGAMALFGEKYGDIVRVVQV-----GEYSLELCGGCHVPNTSEIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSES I AG RR+EA+TG+ A L Q + LK A+ LK V R++ + + Sbjct: 682 FKIVSESGIGAGTRRMEAVTGEGAYRLLNDQVQLLKDAAAKLKTKPQEVGTRIDVLLSDM 741 Query: 768 RKLQLIHAKRKLQL-NVEDLS-CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822 ++LQ + +L N+E S K DVN ++ ++S+V D L++++D L+ K+ S Sbjct: 742 KELQRENQSLASKLGNIEASSLSSKAKDVNGVTMLVSKVAGTDMNNLRTMVDDLKNKLGS 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 GII+L + ++ K ++ VT+DL+++ ++A + + A GGGGGGRP MAQ+GG N Sbjct: 802 GIIVLASV-QDGKVNISAGVTKDLIEKGYHAGKVVKEVATRC-GGGGGGRPDMAQAGGKN 859 Query: 882 GNKADQAIAGVASFLK 897 + D A+ V ++K Sbjct: 860 PEQVDSALQSVEDWIK 875 >gi|312875971|ref|ZP_07735960.1| alanyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A] gi|311797169|gb|EFR13509.1| alanyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A] Length = 883 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 354/909 (38%), Positives = 537/909 (59%), Gaps = 52/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + +T Sbjct: 4 STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L + Sbjct: 64 TCQKCIRT----PDIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL++T+Y+ED+EAF++W K GL D+I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEE 178 Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P G + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 179 KGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +DID+ K + +VT +Y + V+ RVI DH+R + F+I DGILP+NEGRG Sbjct: 239 DSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + R+LG E + ++ + + YPEL+Q I++ L +E+ RF Sbjct: 299 YVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESRF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D GL +L+ + L K++ ILNG++AF++YDT+G PLD+ ++I +G+ +D Sbjct: 359 NQTIDVGLEILESEIEKLKKNKETILNGEIAFRMYDTYGFPLDLTKEIAAEKGII-VDQE 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ +++Q+ RARA L + + I + E T F+GYD L ++D K+ Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTL------EQDAKIF 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 I L N ++ VK EE V V+ D+TPFYAE+GGQ+ D G G Sbjct: 471 ----KIFLDNEETAYVK---------EEDVCF----VILDKTPFYAESGGQVADKGILEG 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G+ ++ DV+K +G +H V +G + S+V +D + R NH+ATHLLH A Sbjct: 514 EGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVVAKVDEELRLATMKNHTATHLLHSA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG H Q+GS +TPD LRFD H +P++ ++ IE VN++I Q +PV + + Sbjct: 574 LRKILGQHAQQSGSQVTPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTDL 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS+ Sbjct: 634 DSALKMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775 AG+RRIEAITG + ++ + LK L S +K S ++ ++E++ + L+ Sbjct: 689 AAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENTIKALENEVE 748 Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGI 830 K KL + +LS K D I++ ++ ++ K + D ++++ I++ + I Sbjct: 749 KYKLLVVENELSSLFGKAVDYGEFKLIVNRKETDDMDYVKLLTDKIKERDSKAIVLNI-I 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888 + K ++L+ +++ + + VD ++ +V GG GGGRP AQ GG + +K D A Sbjct: 808 QQGSKVTILMSCSKEAVKK--GVDCGKVVKEVCSVLGGKGGGRPDFAQGGGNDISKIDMA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 LQTAENILK 874 >gi|289578243|ref|YP_003476870.1| alanyl-tRNA synthetase [Thermoanaerobacter italicus Ab9] gi|289527956|gb|ADD02308.1| alanyl-tRNA synthetase [Thermoanaerobacter italicus Ab9] Length = 877 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 357/908 (39%), Positives = 547/908 (60%), Gaps = 53/908 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+ GH LPS SLIP ND +L+ NSGM P K FTG+E P + +TT Sbjct: 6 MNEIREKYLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKAYFTGKEVPPSKRITT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R D++ VG+T RH TFFEMLGNFS G YFK+ AI AW+ +T+ L Sbjct: 66 CQRCIRT----PDIERVGKTARHGTFFEMLGNFSIGDYFKKEAIPWAWEFVTEILKLPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y+ED+EAF++W KI GL +++I+R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPSERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R+IE WNLVF QF + + LP +IDTGMGLERMAT++Q Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERMATIMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D+ + + ++ ++Y + V+ RVI DH+R +F+I+DGILP+NEGRGY Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG + + ++ ++ G AYPE+I+ K I+ ++ E+ERF Sbjct: 301 VLRRLLRRAARHGKLLGINDAFLYKVVDSVVENYGEAYPEIIERKDYIKRIIKVEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D+GL +L ++ L GK +L G AFKLYDT+G PLD+ ++IL G+ +D Sbjct: 361 ETIDQGLTILQDYINELKLQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEVGIV-VDEE 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + + LE+QR RAR+ S + I+ +L + T+F+GY Sbjct: 419 GYTKELEKQRIRARSRRKEDNSLWEQDIYSTLGDI--KTKFVGY---------------- 460 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 T G +S V AIV++ E+VEEA +G V ++ D TPFYAE+GGQ+GD G Sbjct: 461 -------TTYGCNSKVLAIVKEEELVEEAEAGDDVSIILDITPFYAESGGQIGDKGVLEN 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + +++ D +K + FVH +ERG++ + ID +R + NH+ATHLLH A Sbjct: 514 ENVLIRVKDCKKIGDK-FVHIGTIERGLISVGDDVKARIDVVSRNNAARNHTATHLLHKA 572 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG HV Q GS + D LRFD +H + +T ELK IE+ VN+ I Q+L V Sbjct: 573 LKEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKKIENRVNEKIYQSLNVYIEEKTY 632 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A+ GA AL KY D+VRVV ++ +S LCGGTHV +T EI L +VSES++ Sbjct: 633 DEALKEGAVALFTEKYGDKVRVVRIDD-----YSVELCGGTHVKNTNEIGLFKVVSESAV 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIH 774 AG+RRIEA+TG A +L ++E LK + LK +V ++E + + + + ++ Sbjct: 688 GAGLRRIEALTGPYAIKYLEEKEEILKGASDLLKAQDKELVSKIEGLQQALKAKDKEIEQ 747 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831 K K+ + D + ++ + ++S++ DS+ LK++ D L+ K+++ +++L + Sbjct: 748 LKIKMASILADSLINSAISLDGIRVVVSKIEDYDSEALKALGDILKDKLKTAVVVLASST 807 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E KA + + T+D++ + N + + + KV G GGGRP +AQ G N +K +A+ Sbjct: 808 LE-KAIFVGMATKDVVQKGINMGAVIKEACKV-SEGNGGGRPDIAQGTGKNPSKVKEALD 865 Query: 891 GVASFLKK 898 +K+ Sbjct: 866 KAIEVVKE 873 >gi|297544523|ref|YP_003676825.1| alanyl-tRNA synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842298|gb|ADH60814.1| alanyl-tRNA synthetase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 877 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 357/908 (39%), Positives = 547/908 (60%), Gaps = 53/908 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+ GH LPS SLIP ND +L+ NSGM P K FTG+E P + +TT Sbjct: 6 MNEIREKYLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKAYFTGKEVPPSKRITT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R D++ VG+T RH TFFEMLGNFS G YFK+ AI AW+ +T+ L Sbjct: 66 CQRCIRT----PDIERVGKTARHGTFFEMLGNFSIGDYFKKEAIPWAWEFVTEILKLPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y+ED+EAF++W KI GL +++I+R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPSERIVRMGKEDNFWEIG-TGPCGPCSEIYFDRGEEK 180 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R+IE WNLVF QF + + LP +IDTGMGLERMAT++Q Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERMATIMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D+ + + ++ ++Y + V+ RVI DH+R +F+I+DGILP+NEGRGY Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG + + ++ ++ G AYPE+I+ K I+ ++ E+ERF Sbjct: 301 VLRRLLRRAARHGKLLGINDAFLYKVVDSVVENYGEAYPEIIERKDYIKRIIKVEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D+GL +L ++ L GK +L G AFKLYDT+G PLD+ ++IL G+ +D Sbjct: 361 ETIDQGLTILQDYINELKLQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEVGIV-VDEE 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + + LE+QR RAR+ S + I+ +L + T+F+GY Sbjct: 419 GYTKELEKQRIRARSRRKEDNSLWEQDIYSTLGDI--KTKFVGY---------------- 460 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 T G +S V AIV++ E+VEEA +G V ++ D TPFYAE+GGQ+GD G Sbjct: 461 -------TTYGSNSKVLAIVKEEELVEEAEAGDDVSIILDITPFYAESGGQIGDKGVLEN 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + +++ D +K + FVH +ERG++ + ID +R + NH+ATHLLH A Sbjct: 514 ENVLIRVKDCKKIGDK-FVHIGTIERGLISVGDDVKARIDVVSRNNAARNHTATHLLHKA 572 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG HV Q GS + D LRFD +H + +T ELK IE+ VN+ I Q+L V Sbjct: 573 LKEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKKIENRVNEKIYQSLNVYIEEKTY 632 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A+ GA AL KY D+VRVV ++ +S LCGGTHV +T EI L +VSES++ Sbjct: 633 DEALKEGAVALFTEKYGDKVRVVRIDD-----YSVELCGGTHVKNTNEIGLFKVVSESAV 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE--EYRKLQLIH 774 AG+RRIEA+TG A +L ++E LK + LK +V ++E + + + + ++ Sbjct: 688 GAGLRRIEALTGPYAIKYLEEKEEILKGASDLLKAQDKELVSKIEGLQQALKAKDKEIEQ 747 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831 K K+ + D + ++ + ++S++ DS+ LK++ D L+ K+++ +++L + Sbjct: 748 LKIKMASILADSLINSAISLDGIRVVVSKIEDYDSEALKALGDILKDKLKTAVVVLASST 807 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E KA + + T+D++ + N + + + KV G GGGRP +AQ G N +K +A+ Sbjct: 808 LE-KAIFVGMATKDVVQKGINMGAVIKEACKV-SEGNGGGRPDIAQGTGKNPSKVKEALD 865 Query: 891 GVASFLKK 898 +K+ Sbjct: 866 KAIEVVKE 873 >gi|302871868|ref|YP_003840504.1| alanyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47] gi|302574727|gb|ADL42518.1| alanyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47] Length = 881 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 346/909 (38%), Positives = 529/909 (58%), Gaps = 52/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + +T Sbjct: 4 STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L + Sbjct: 64 TCQKCIRTP----DIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL++T+Y+ED+EAF++W K GL +I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPQRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGED 178 Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P G + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 179 KGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQEV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +DID+ K + +VT +Y N V+ RVI DH+R F+I DGILP+NEGRG Sbjct: 239 DSLFDIDIVKAIRNKVCEVTNYEYGKNAEKDVSVRVITDHIRGIVFMIGDGILPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + R+LG E + ++ + + YPEL+Q I++ L +E+ RF Sbjct: 299 YVLRRLIRRASRHGRMLGKKEAFLHLIVDTVIESYKNPYPELVQKAEYIKKVLYNEESRF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D GL +L+ + L K++ ILNG++AFK+YDT+G PLD+ ++I +G+ +D Sbjct: 359 NQTIDVGLEILENEIEKLKKNKETILNGEIAFKMYDTYGFPLDLTKEIAAEKGII-VDQE 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ +++Q+ RARA L + + I ++E T F+GY+ L K++ K+L Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIEEDI-ETVFVGYETL------KQESKIL 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 I + E V A V+ D+TPFYAE+GGQ+ D G G Sbjct: 471 -----------------KIFMEDEEVAYAKEEDVCFVILDKTPFYAESGGQVADKGILEG 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G+ ++ DV+K +G +H V +G + S++ +D R NH+ATHLLH A Sbjct: 514 EGVLAEVLDVKKGPKGTILHKVKVLKGEISVLSSVIAKVDEGLRFATMKNHTATHLLHSA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG H Q+GS ++ D LRFD H +P++ ++ IE VN++I Q +PV + + Sbjct: 574 LRKILGQHAQQSGSQVSADRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTDL 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS+ Sbjct: 634 DSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775 AG+RRIEAITG + ++ + LK L S +K S ++ ++E++ + L+ Sbjct: 689 AAGVRRIEAITGNKVYEFILNSQQTLKQLRSKVKASTDSEILAKIEQLENRIKDLENEVE 748 Query: 776 KRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV---MDALQKKIQSGIIMLVGI 830 K KL + ++S VN+ I++ ++ ++ V D ++++ I++ + + Sbjct: 749 KYKLLVIESEISSLIDKAVNYGEFKLIVNRKETDDMDYVKLFTDKIKERDSKAIVLNI-L 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888 + K +VL+ +++ + + VD ++ ++ GG GGGRP AQ GG + K D A Sbjct: 808 EQGNKVTVLMSCSKEAVKK--GVDCGKVVKEICAVLGGKGGGRPEFAQGGGNDILKIDIA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 VQTAENILK 874 >gi|312143796|ref|YP_003995242.1| alanyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus'] gi|311904447|gb|ADQ14888.1| alanyl-tRNA synthetase [Halanaerobium sp. 'sapolanicus'] Length = 877 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 363/913 (39%), Positives = 541/913 (59%), Gaps = 66/913 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +L+FF+ H +L S+ L+P NDP+L++ N+GM PFK F G +P + + T QK Sbjct: 8 IRQAYLDFFESKDHLVLDSAPLVPKNDPSLLWINAGMAPFKAYFDGSLEPPHPRIATSQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVG+T RHHT+FEMLGNFSFG YFKE+AI AW+ +T+ + ++ RL+ Sbjct: 68 CIRT----NDIENVGKTARHHTYFEMLGNFSFGDYFKEKAIIWAWEFVTEVLEFEEDRLW 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ 180 IT+Y +D+EA +W+K GL ++I+R+ +NFW + TGPCGPCSEI +D+G Sbjct: 124 ITIYKDDDEAHDIWQKKVGLPEERIVRMGKKENFWQIG-TGPCGPCSEIHYDRGIEFGDS 182 Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E + GG EG+R++EIWNLVF Q+ E LP +IDTGMGLER+A++LQ Sbjct: 183 SEDVLGG------EGDRFLEIWNLVFTQYNYTEAGEYKELPNKNIDTGMGLERVASILQN 236 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGR 297 N++ DL K +I TG+ Y+ ++ +RVI DH+RS + I+DG LP+NEGR Sbjct: 237 TKTNFETDLIKPIIDEVVAKTGIAYQKDDESQTAYRVIADHIRSVAVAISDGALPSNEGR 296 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA Y R +G+TEP + L+ + P+L Q +E ++SE+E Sbjct: 297 GYVIRRLIRRAARYGRKIGFTEPFLYELVKTTAEVVKGVAPDLKQQLAHVENVIKSEEES 356 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KTL++GL +L+ L L + E+L+G AF LYDT+G PLD+ +DI G+ +D Sbjct: 357 FLKTLEQGLNILEDFLVDLKAENKEVLSGKNAFILYDTYGFPLDLTKDIASEAGIM-VDE 415 Query: 416 ISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + QR RAR SG +K++ S K + A +F GY L Sbjct: 416 EGFEAEMAAQRKRAREAREETSFSSGEIDKLYASFKAEVEAVEFTGYHSLTE-------- 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S V IV++ + ++ G++ +V +TPFYAE+GGQLGD G Sbjct: 468 ---------------ESEVVGIVRENQKLQSIKKGEEANLVLHKTPFYAESGGQLGDKGI 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHL 592 + ++ + +A+ + VH VE+G L+ S V + Y +RR+ + +HSATHL Sbjct: 513 IKNENFEAKVLNTFARAK-LPVHKVKVEKGELKRGDS-VKAVVYDDRRKATARHHSATHL 570 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH L +LG HV+Q+GS + P+ LRFD TH ++ EL IE +N + +N PV T Sbjct: 571 LHKTLKEVLGEHVNQSGSLVAPEKLRFDFTHFSALSDQELNEIEKRINKAVMENYPVETE 630 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 E+A A GA AL G KY++ VRVV + G +S LCGGTHV +TG+I I+S Sbjct: 631 EKALEEAKAMGAEALFGEKYDEEVRVVKM-----GDYSLELCGGTHVDATGDIGPFKIIS 685 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 ES I AG+RRIEA+ G+ A + + + L A+ LK V R++++ +E ++LQ Sbjct: 686 ESGIAAGVRRIEAVVGEFALDYFNEKVDILNQAAAELKTEPDQVADRIKDLQKEKKELQK 745 Query: 772 -LIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L K+KL + +D K +A +N ++ +SE+D++ L++++D L+ K+ S +I+L Sbjct: 746 ELQSLKQKLAGSKKDELLDKLKNVAGINVLTAELSELDNQGLRNLIDQLKDKLDSAVIVL 805 Query: 828 VGISKEKKASVLIV-VTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 SK + V + VT DL+++ F+A + A+V GGGGGGRP MAQ+GG +K Sbjct: 806 A--SKGQNKVVFVASVTADLIEQGFHAGKIISEVAQV-AGGGGGGRPDMAQAGGSKVDKT 862 Query: 886 DQAIAGVASFLKK 898 A+A V +KK Sbjct: 863 AAALAKVEEIIKK 875 >gi|255655294|ref|ZP_05400703.1| alanyl-tRNA synthetase [Clostridium difficile QCD-23m63] gi|296451278|ref|ZP_06893018.1| alanine--tRNA ligase [Clostridium difficile NAP08] gi|296880370|ref|ZP_06904333.1| alanine--tRNA ligase [Clostridium difficile NAP07] gi|296259884|gb|EFH06739.1| alanine--tRNA ligase [Clostridium difficile NAP08] gi|296428611|gb|EFH14495.1| alanine--tRNA ligase [Clostridium difficile NAP07] Length = 879 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 344/909 (37%), Positives = 549/909 (60%), Gaps = 54/909 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR+ FLEFF+ GH + S SL+P ND +L+ NSGM P KN F+G E P + T Sbjct: 6 LNEIRSKFLEFFESKGHYVANSYSLVPNNDKSLLLINSGMAPLKNYFSGVEVPPSVRMCT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG T RH TFFEM+GNFSFG YFK +I+ W+ +T+ ++ + Sbjct: 66 SQKCIRTG----DIENVGITARHATFFEMMGNFSFGDYFKRESIKWGWEFVTEWLNIPED 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181 ++++TVY+ED++++ +W K ++++++ +DNFW + TGPCGPCSEI+FD+GE Sbjct: 122 KIWVTVYEEDDDSYDIWAKEMNFPEERMVKLGKDDNFWEIG-TGPCGPCSEIYFDRGEEY 180 Query: 182 -CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 C P PG + +RY+E WN VF QF++ + +L +IDTGMGLERM ++Q Sbjct: 181 GCDNPDCKPGC--DCDRYLEFWNHVFTQFDRDEEGNYSLLENKNIDTGMGLERMGCIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K +++A E++TG+KY N N ++ R+I DH+R+ +FL++DG+LP+NEGR Sbjct: 239 VDTIFEVDTIKSILEAVEKLTGVKYGENPKNDISIRIITDHIRAVTFLVSDGVLPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG E + L+ + AYP L++ + I++ + E+E+ Sbjct: 299 GYVLRRLLRRAARHGKLLGVKELFLQKLIDEVIKVNDKAYPVLVEKESYIKKVVGIEEEK 358 Query: 358 FGKTLDRGLVLLDG---VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F +T+D+G +L+ VL + GK +L+G AFKLYDT+G P+D+ ++IL L+ +D Sbjct: 359 FNETIDQGTEILNSYIEVLKNEGK-TVLSGQEAFKLYDTYGFPIDLTKEILEEEHLS-VD 416 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +FN+ +E+Q+ RAR + + ++ S E + F GY + G Sbjct: 417 EEAFNEEMEKQKERARNARGNMDGESWKEDPLSKLESTVDSTFNGYSEIYGE-------- 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++AIV+ E+V+ A G KV +V D T FY E GGQ+GD G Sbjct: 469 ---------------GTIEAIVKDDELVQSAKEGDKVSIVLDNTTFYPEGGGQVGDCGLI 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + L++ + +K A H I++ G + + +D + R + NHSATHLLH Sbjct: 514 TNENLVLEVLNTKKGANNSIKHIGIIKSGSISNGDKVKTLVDRETRMSAARNHSATHLLH 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q GS +TP+ LRFD+TH + I++ ELK IE+ VN++I +L + IM Sbjct: 574 KALREVLGEHVNQAGSLVTPERLRFDITHFEAISNEELKVIEEKVNNVILSSLDIKCDIM 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 N ++A GA AL G KY D VRVVS+ G +S+ LCGGTH+++T ++ + I+SE Sbjct: 634 NIKEAKEKGATALFGEKYGDEVRVVSM-----GDYSTELCGGTHLTNTSQVGMFKILSEG 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEAITG+ +L +D + + LK + N++ R+ + EE + L +L Sbjct: 689 GVAAGVRRIEAITGKAVYEYLKERDGIISEVCVNLKSKEDNLIQRISSLLEENKNLSKEL 748 Query: 773 IHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K+ L D S ++ VN +++ +D L+ D L+ K+ SG+++L Sbjct: 749 HDMKAKMSLQSVDSIFDSKVEVNGVNLITNKFEGMDMDTLRETADNLRDKLGSGVVVLAN 808 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K + ++ T+D+LD+ ++ ++ R AK+ GG GGGRP+MAQ+G + +K DQA Sbjct: 809 VV-DDKVNFVVTATKDVLDKGIHSGNIVREVAKI-AGGKGGGRPNMAQAGASDVSKVDQA 866 Query: 889 IAGVASFLK 897 ++ + +K Sbjct: 867 LSYASEVIK 875 >gi|160902096|ref|YP_001567677.1| alanyl-tRNA synthetase [Petrotoga mobilis SJ95] gi|205830174|sp|A9BJE0|SYA_PETMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160359740|gb|ABX31354.1| alanyl-tRNA synthetase [Petrotoga mobilis SJ95] Length = 876 Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust. Identities = 342/910 (37%), Positives = 539/910 (59%), Gaps = 62/910 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+K GH+ LPSSSLIP NDP L+FT +GMVPFK IF G+ +P Y +TT QK Sbjct: 9 IRENFLYFFEKKGHKKLPSSSLIP-NDPQLLFTVAGMVPFKPIFWGKVEPTYTRITTCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+E L +L+ Sbjct: 68 CLRT----NDIENVGRTPRHHTFFEMLGNFSFGDYFKKEAIKWAWEFLTEELGLPAEKLW 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG----- 180 +VY+ D+EAF +WK + +KI+R +N+W A +TGPCGPCSEI+FD G Sbjct: 124 ASVYETDDEAFNIWKDDIKIPENKILRFGKEENWWGPAGQTGPCGPCSEIYFDTGYTENC 183 Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 C P G R++EIWN+VF ++ LP+ +IDTG G ER+ V Sbjct: 184 PDQENCTPACDCG------RFVEIWNIVFTEYYSDENGNLSPLPRKNIDTGAGFERICAV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294 Q K +N+D DLFK +I+ +++ G+K+ N V+ +VI DH R+ +FLI++GI+P+N Sbjct: 238 TQGKYDNFDSDLFKEIIEEIQRIFGVKFRVNKSKDVSIKVIADHSRAIAFLISEGIIPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ + LL P + +L + +MG YPELI+ + LI++ E Sbjct: 298 EGRGYVLRRLIRRAVRHGALLEAKGPFLSSILETVIKKMGKIYPELIEKEALIKDISFME 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E+F +T+++G+ L+ ++ +L + L G +AF+LYDT+G PLD+ ++IL +G+ +D Sbjct: 358 EEKFFETMEKGMERLNNIIQNLNNETTLPGKIAFELYDTYGFPLDLTKEILSEKGIE-VD 416 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + + +QR AR+ S + T ++I+ + + T+FIGYD L ++ Sbjct: 417 EKEFTELMNKQREMARSASGKVEYDTEKQIYKEIDKFLTPTEFIGYDKLSSTE------- 469 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V+ I++ IV +A G ++E+ F +TPFYAE GGQ+ D G Sbjct: 470 ----------------EVQLIIKGNSIVPQAQEGDEIELFFPKTPFYAERGGQVSDKGVI 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++ V+ I H +++G ++ + L +D + R+ NH+ATHLLH Sbjct: 514 YNETFEAEVIHVKPIRNEIISHLVKIKKGSIKNGERVFLKVDEKKRKATEKNHTATHLLH 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G H+ Q GS + P+ LRFD TH +P+T ++K IE +N+ I + +PV + Sbjct: 574 SALRKVIGEHIRQAGSYVAPERLRFDFTHYEPLTQDQIKQIEYLINEQIQKAIPVNIYLK 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A + AL KY + VR+V ++ S LCGGTHVS+TGEI L I+ ES Sbjct: 634 SLEEAKSMDVIALFEEKYGEVVRIVEID-----DFSRELCGGTHVSNTGEIGLFKILEES 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 SI +G+RRIEAITG + ++ + + +L+ L S+ + ++E I + + + Sbjct: 689 SISSGVRRIEAITGFESLNYATELESIMTNLSKMLDSSRDQIPDKIEGILKTIKNQE--K 746 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSH----IISEVDSKELK---SVMDALQKKIQSGIIML 827 ++LQ + + ++A+ + +++++++ E + D L +K+ G+++L Sbjct: 747 EIKQLQFQLATKNIERLAETPQIIEGEKVVVAQLENLEKDVHANTADILLQKLGRGVVIL 806 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S ++ S+++ V++D +F+A ++AR A L GGGGGG P AQ+GG NK + Sbjct: 807 FNKSNNEQVSLVVKVSKDTSKKFHAGNIARKIASYL-GGGGGGGPTFAQAGGKYANKVKE 865 Query: 888 AIAGVASFLK 897 I + F++ Sbjct: 866 VIEHINDFME 875 >gi|126698879|ref|YP_001087776.1| alanyl-tRNA synthetase [Clostridium difficile 630] gi|254974827|ref|ZP_05271299.1| alanyl-tRNA synthetase [Clostridium difficile QCD-66c26] gi|255092215|ref|ZP_05321693.1| alanyl-tRNA synthetase [Clostridium difficile CIP 107932] gi|255100300|ref|ZP_05329277.1| alanyl-tRNA synthetase [Clostridium difficile QCD-63q42] gi|255306239|ref|ZP_05350411.1| alanyl-tRNA synthetase [Clostridium difficile ATCC 43255] gi|255313954|ref|ZP_05355537.1| alanyl-tRNA synthetase [Clostridium difficile QCD-76w55] gi|255516634|ref|ZP_05384310.1| alanyl-tRNA synthetase [Clostridium difficile QCD-97b34] gi|255649733|ref|ZP_05396635.1| alanyl-tRNA synthetase [Clostridium difficile QCD-37x79] gi|260682889|ref|YP_003214174.1| alanyl-tRNA synthetase [Clostridium difficile CD196] gi|260686487|ref|YP_003217620.1| alanyl-tRNA synthetase [Clostridium difficile R20291] gi|306519842|ref|ZP_07406189.1| alanyl-tRNA synthetase [Clostridium difficile QCD-32g58] gi|122974138|sp|Q18BE7|SYA_CLOD6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|115250316|emb|CAJ68138.1| Alanyl-tRNA synthetase [Clostridium difficile] gi|260209052|emb|CBA62175.1| putative alanyl-tRNA synthetase [Clostridium difficile CD196] gi|260212503|emb|CBE03433.1| putative alanyl-tRNA synthetase [Clostridium difficile R20291] Length = 879 Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust. Identities = 345/909 (37%), Positives = 549/909 (60%), Gaps = 54/909 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR+ FLEFF+ GH + S SL+P ND +L+ NSGM P KN F+G E P + T Sbjct: 6 LNEIRSKFLEFFESKGHYVANSYSLVPNNDKSLLLINSGMAPLKNYFSGVEVPPSVRMCT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG T RH TFFEM+GNFSFG YFK +I+ W+ +T+ ++ + Sbjct: 66 SQKCIRTG----DIENVGITARHATFFEMMGNFSFGDYFKRESIKWGWEFVTEWLNIPED 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181 ++++TVY+ED++++ +W K ++++R+ +DNFW + TGPCGPCSEI+FD+GE Sbjct: 122 KIWVTVYEEDDDSYDIWAKEMNFPEERMVRLGKDDNFWEIG-TGPCGPCSEIYFDRGEEY 180 Query: 182 -CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 C P PG + +RY+E WN VF QF++ + +L +IDTGMGLERM ++Q Sbjct: 181 GCDNPDCKPGC--DCDRYLEFWNHVFTQFDRDEEGNYSLLENKNIDTGMGLERMGCIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +++D K +++A E++TG+KY N N ++ R+I DH+R+ +FL++DG+LP+NEGR Sbjct: 239 VDTIFEVDTIKSILEAVEKLTGVKYGENPKNDISIRIITDHIRAVTFLVSDGVLPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG E + L+ + AYP L++ + I++ + E+E+ Sbjct: 299 GYVLRRLLRRAARHGKLLGVKELFLQKLIDEVIKVNDKAYPVLVEKESYIKKVVGIEEEK 358 Query: 358 FGKTLDRGLVLLDG---VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F +T+D+G +L+ VL + GK +L+G AFKLYDT+G P+D+ ++IL L+ +D Sbjct: 359 FNETIDQGTEILNSYIEVLKNEGK-TVLSGQEAFKLYDTYGFPIDLTKEILEEEHLS-VD 416 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +FN+ +E+Q+ RAR + + ++ S E + F GY + G Sbjct: 417 EEAFNEEMEKQKERARNARGNMDGESWKEDPLSKLESTVDSTFNGYSEIYGE-------- 468 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++AIV+ E+V+ A G KV +V D T FY E GGQ+GD G Sbjct: 469 ---------------GTIEAIVKDDELVQSAEEGDKVSIVLDNTTFYPEGGGQVGDCGLI 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + L++ + +K A H I++ G + + +D + R + NHSATHLLH Sbjct: 514 TNENLVLEVLNTKKGANNSIKHIGIIKSGRISNGDKVKTLVDRETRMSAARNHSATHLLH 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q GS +TP+ LRFD+TH + I++ ELK IE+ VN++I +L + IM Sbjct: 574 KALREVLGEHVNQAGSLVTPERLRFDITHFEAISNEELKVIEEKVNNVILSSLDIKCDIM 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 N ++A GA AL G KY D VRVVS+ G +S+ LCGGTH+++T ++ + I+SE Sbjct: 634 NIKEAKEKGATALFGEKYGDEVRVVSM-----GDYSTELCGGTHLTNTSQVGMFKILSEG 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEAITG+ +L +D + + LK + N++ R+ + EE + L +L Sbjct: 689 GVAAGVRRIEAITGKAVYEYLKERDGIISEVCVNLKSKEDNLIQRISSLLEENKNLSKEL 748 Query: 773 IHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K+ L D S ++ VN +++ +D L+ D L+ K+ SG+++L Sbjct: 749 HDMKAKMSLQSVDSIFDSKVEVNGVNLITNKFEGMDMDTLRETADNLRDKLGSGVVVLAN 808 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K + ++ T+D+LD+ ++ ++ R AK+ GG GGGRP+MAQ+G + +K DQA Sbjct: 809 VV-DDKVNFVVTATKDVLDKGIHSGNIVREVAKI-AGGKGGGRPNMAQAGASDVSKVDQA 866 Query: 889 IAGVASFLK 897 ++ + +K Sbjct: 867 LSYASEVIK 875 >gi|260891458|ref|ZP_05902721.1| alanine--tRNA ligase [Leptotrichia hofstadii F0254] gi|260858841|gb|EEX73341.1| alanine--tRNA ligase [Leptotrichia hofstadii F0254] Length = 871 Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust. Identities = 343/909 (37%), Positives = 530/909 (58%), Gaps = 62/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +F++FF+ H+ S+SLIP +D +L+ T +GMVPFK F G+++ ++ +TT Sbjct: 4 NEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRITTY 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK L++ R Sbjct: 63 QKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLEEDR 118 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD---QGE 181 L+++VY D+EA+++W K G+ A++I+R+ DN+W+ G CGPCSEI++D G+ Sbjct: 119 LWVSVYKTDDEAYEIWNKEIGVPAERIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQNMGK 178 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 ++G+R++EIWNLVF ++ + LP+ +IDTG GLER+ +V+Q K Sbjct: 179 NNEEAYRKPGDDGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERITSVVQNKD 238 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NN+D DLF ++I+ + V ++ +GN N ++I DH+R+S FLI DG+LP+NEGRGY+ Sbjct: 239 NNFDTDLFTNIIKGIKSV--LEIQGNENEEAIKIIADHVRASVFLIGDGVLPSNEGRGYI 296 Query: 301 LRRIMRRAM-----CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 LR+I+RRA ++ + + L+P + M AYPEL + + IE+ +R E+ Sbjct: 297 LRKIIRRAFGAGSSAKQKVFEKEDIFLYKLVPYVLETMNEAYPELAEKQEYIEKVIRLEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF TL G +L+ + L + + L ++ FKLYDT G P ++ + IL +G Sbjct: 357 ERFATTLKNGTEMLEEEIQKLKAENQKELPAELTFKLYDTFGFPFELTKLILENQGFEAS 416 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 + F + L EQ R++ + ++ EK+G T+F GY S+ +E Sbjct: 417 E-EEFEKKLAEQVQRSKDSRTTISDMIKDEFIDEFFEKHGKTEFTGY-----SQNFEEKS 470 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +L I K+ E +SG E++FD+TPFYAE+GGQ+ DTG Sbjct: 471 TLL-------------HIAKS---------EGISG--YEMIFDKTPFYAESGGQVADTGI 506 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ +V KK + +F+H + RGI + + + ID R+ + NH+ATH+ Sbjct: 507 ITSGEFEGRVVNVVKKHD-VFIHQVEITRGIAPAVGVEVKMQIDVNRRKDIQRNHTATHI 565 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH L LG+HV Q+GS + + LRFD +H + ++ ++ IE VNDII NL V Sbjct: 566 LHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAVSPEMIEKIEKGVNDIILSNLQVKIN 625 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 N EDA A GA AL KY D VRVV + DG +S LCGGTHV STGEI L I S Sbjct: 626 YENIEDAKARGAMALFSDKYGDVVRVVEI---DG--YSIELCGGTHVKSTGEIGLFNIES 680 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I +G RRI A TG ++ +++ +EK+K ++ + + NVV +E+ + R Sbjct: 681 ESGIASGTRRITATTGHKSLNYVNRLEEKIKEISDIFRTDEKNVVDIIEKYIGDMRAAVK 740 Query: 773 IHAKR-----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +H + K ++N + + DV + + ELK ++D ++K+QSGII+L Sbjct: 741 VHEEMQTKLVKYEINEMLENLETVNDVKVLKSSFENKNVDELKEIVDRGKEKMQSGIIIL 800 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G + KA ++ VT+DL+ + A ++ +++A+V GG GGGRP AQ+GG +G+ + Sbjct: 801 -GTNNNGKAIFVVGVTKDLISKVKAGEIVKVAAQV-AGGNGGGRPDFAQAGGKDGSAVKE 858 Query: 888 AIAGVASFL 896 A+ F+ Sbjct: 859 AVEKAFEFI 867 >gi|218961963|ref|YP_001741738.1| alanyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans] gi|167730620|emb|CAO81532.1| alanyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans] Length = 866 Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust. Identities = 364/911 (39%), Positives = 527/911 (57%), Gaps = 66/911 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR F++FF GH +PSS +IP +DPTL+F N+GM FK+IF GQ++ Y+ Sbjct: 1 MISSKEIRQQFIDFFLNRGHIFVPSSPVIPEDDPTLLFANAGMNQFKSIFLGQKEITYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+RAGGKHNDL+ VG+ HHTFFEMLGN+SFG Y+K+ AI AW+LLT+ + + Sbjct: 61 VVNSQKCIRAGGKHNDLEEVGKDGYHHTFFEMLGNWSFGDYYKKEAISWAWELLTEVWKI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY D EAF++WK+ + + I DNFW M ETGPCGPCSEI D+G Sbjct: 121 PKDKLYATVYKTDTEAFEIWKQETDIDPTHISYFDDKDNFWEMGETGPCGPCSEIHIDRG 180 Query: 181 --ECI----PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 C PG + + R+IE+WNLVF+Q+ ++ + L +DTG G ER+A Sbjct: 181 SSHCTRQNEPGHICKINGGCSRFIELWNLVFIQYNREADKTLSPLKNKFVDTGAGFERLA 240 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ+K +NY+ DLF LI E+++G+ Y + HRVI DH+R F +ADG P+N Sbjct: 241 QVLQDKNSNYETDLFMPLINKIEELSGVAYTQETGMPHRVIADHIRCLCFALADGGFPSN 300 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA Y RLLG+ EP + L+P + +M + EL + I+ +++E Sbjct: 301 EGRGYVLRRILRRAARYGRLLGFAEPFLHLLVPLVIEQMAHHFSELNGKEDYIKMVIKAE 360 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF KTLD GL + L K E+++G AF LYDT+G P D+ + +GL ID Sbjct: 361 EERFNKTLDTGLEKFREITQKL-KGEVISGSDAFILYDTYGFPPDLTAILAEEKGLK-ID 418 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++ QR RAR A L + I FS T+F+GY Sbjct: 419 YEGFEKEMQLQRKRARKASKFTLFVNNEDWIEFS---PVTPTEFVGYK------------ 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V+ +Q+ I E+ + + + QTPFYAE+GGQ+ DTG Sbjct: 464 ---------------ENTVQTYIQRYAIQEKGL----ILMQLAQTPFYAESGGQVSDTGK 504 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + L+IT+V+K+ E I +H+ ++RG + + ID + R+ ++ NH+ATHLL Sbjct: 505 IYNEEFELEITNVRKQDEYI-IHYGKLKRGTVNN-APVTAEIDRERRKSIARNHTATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG H Q GS + D LRFD H + +T E++ +ED VN + N V T + Sbjct: 563 HKALREVLGEHTVQKGSLVHSDYLRFDFAHFRALTLEEIRKVEDIVNQAVLDNRKVKTTV 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 N E+A GA AL G KY+++VRVV VE S LCGGTH+SSTGEI L I+SE Sbjct: 623 KNIEEAKKEGAIALFGEKYSEKVRVVCVEN-----FSQELCGGTHISSTGEIGLFKIISE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY----RK 769 SS AGIRRIEAITG A + +KL +++ L N+ ++E E+ R+ Sbjct: 678 SSSAAGIRRIEAITGISALKWVQDLQDKLSRISTLLNSPVKNIESKLEATLEQISALERE 737 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLV 828 L+ AK + + E LS + + +E D+ +ELK+ + L+ K+Q I +L Sbjct: 738 LKSAKAKEEEKFVQELLSKATKQENYLLIKAQTEFDNLEELKTTAEQLKTKMQGTIAVLF 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + ++ K ++L VV+ DL+ ++NA + A+L+ ++ G GGGR +A +GG + Sbjct: 798 NLYQD-KLNILCVVSADLIPKYNAGKIVAKLANEL--KGKGGGRTDIAMAGGKD------ 848 Query: 888 AIAGVASFLKK 898 IA +AS ++K Sbjct: 849 -IANLASVMEK 858 >gi|220929512|ref|YP_002506421.1| alanyl-tRNA synthetase [Clostridium cellulolyticum H10] gi|219999840|gb|ACL76441.1| alanyl-tRNA synthetase [Clostridium cellulolyticum H10] Length = 879 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 346/907 (38%), Positives = 549/907 (60%), Gaps = 50/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ GH LPS+ L+P NDP+L+ NSGM P K FTGQE+P + VTT Sbjct: 6 LNELRERYLKFFESKGHLRLPSAPLVPKNDPSLLLINSGMAPLKPFFTGQEEPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH T+FEMLGNFSFG YFK AI AW+ +TK+ ++ Sbjct: 66 CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKNEAIPWAWEFVTKDLEMPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++T+Y++D+EAF +W K+ GL A++I+R+ DNFW GPCGPCSEI+FD+G Sbjct: 122 KLWVTIYEDDDEAFDIWHKVVGLPAERIVRMGKKDNFWEHG-IGPCGPCSEIYFDRGPEK 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+E WN VF QF + + L +IDTGMGLER+A + Q+ Sbjct: 181 GCGSPDCKVGCECDRYVEFWNNVFTQFNKDEQGNYTRLAHPNIDTGMGLERLACISQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D ++++ + G++Y+ + V+ RV+ DH+RS++ ++ DG+LP+NEGRGY Sbjct: 241 NLFEVDTVWNILEFICKTAGVEYKKSEKTDVSIRVVTDHIRSTTMMVCDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG +P + + + E AYPEL + I++ ++ E+ERF Sbjct: 301 VLRRLLRRAARHGRLLGINKPFLYDVAMVVINESKEAYPELAEKADYIKKVIKIEEERFE 360 Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 T+D+G+++L+ + + K ++ G++ FKL+DT+G PLD+ ++I GL GID Sbjct: 361 ATVDQGIIILNEFIDEIKAEKQNVIPGEMVFKLHDTYGFPLDLTREIAEENGL-GIDEEG 419 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + ++ QR +AR AH+ S ++ ++ L +K T F+GY+ Sbjct: 420 FKREMDAQRKKARDAHNSKDTSAWSDSVYDKL-DKSQKTAFVGYE--------------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S++ IV+ GEIV+ A G ++ V+ D+TPFYAE GGQ+GDTG Sbjct: 464 --------NTASDSVILYIVKDGEIVDTAQEGDEITVILDKTPFYAEMGGQVGDTGILTA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +++I + K A+G F+H VE GI+ T ++ +ID + R ++ NH+ THLLH A Sbjct: 516 QNGKVKIENCTKTADGKFLHTGFVETGIVETGSTITASIDEKRRIAINRNHTVTHLLHKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L T+LG HV Q GS + P+ LRFD +H +T ELK +ED N++I ++ V + M+ Sbjct: 576 LRTVLGDHVHQAGSLVEPNKLRFDFSHFSAMTPEELKKVEDITNEVILSSMNVNIKEMSI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A GA AL G KY + VRVV VE +S LCGGTH+++T + L+ I+ ES + Sbjct: 636 DEAKKLGALALFGEKYGNTVRVVKVED-----YSIELCGGTHLNNTAQAGLVKILGESGV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHA 775 AG+RR+EA+TG+ A + ++ L +A LK + + + +VE + +E + + I Sbjct: 691 AAGVRRLEALTGEAAIRYYTDRENLLNEVAQALKAAPQDSLKKVESLGQELKNAEKEIEQ 750 Query: 776 KRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 R ++ E S +I V ++ +D + L++ D L+ K+ SG+++L G Sbjct: 751 LRNKLVSGEAESVLANAVEIKGVKVVTARFDTMDMEGLRNTGDMLKNKLGSGVVVL-GSG 809 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 +K S ++ T+D++ + ++ ++ + AK GGGGGGRP MAQ+GG + +K D+A+ Sbjct: 810 YGEKVSFIVTATKDVVAKGIHSGNIIKEVAKT-AGGGGGGRPDMAQAGGKDLSKIDEALK 868 Query: 891 GVASFLK 897 AS ++ Sbjct: 869 TAASIVE 875 >gi|52081222|ref|YP_080013.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|52786603|ref|YP_092432.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|319644810|ref|ZP_07999043.1| alanyl-tRNA synthetase [Bacillus sp. BT1B_CT2] gi|59798507|sp|Q65GS5|SYA_BACLD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52004433|gb|AAU24375.1| alanyl-tRNA synthetase [Bacillus licheniformis ATCC 14580] gi|52349105|gb|AAU41739.1| AlaS [Bacillus licheniformis ATCC 14580] gi|317392619|gb|EFV73413.1| alanyl-tRNA synthetase [Bacillus sp. BT1B_CT2] Length = 878 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 351/910 (38%), Positives = 532/910 (58%), Gaps = 58/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SLIP DP+L++ NSG+ K F G+ P + Sbjct: 7 AQVRQMFLDFFKEKGHAVEPSASLIPHEDPSLLWINSGVATLKKYFDGRVVPENPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT K D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTDQKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +TV+ ED+EA++LW K G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ERLSVTVHPEDDEAYELWSKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGED 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E ERY+E+WNLVF +F LPK +IDTGMGLERM +V+ Sbjct: 180 Y-GNDPSDPELYPGGENERYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSVI 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q+ NYD DLF +I+A+E ++G KY +V+ DH+R+++F + DG LP+NE Sbjct: 239 QDAKTNYDTDLFMPIIKATEAISGEKYGTSAEKDTAFKVVADHIRTAAFAVGDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYV+RR++RRA+ YA+ + P M L+P + M + Y E+ + I + +++E+ Sbjct: 299 GRGYVIRRLLRRAVRYAKSININRPFMYELVPVVADIMAAFYGEVKEKADFIAKVIKTEE 358 Query: 356 ERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TL GL +L V+ + I++G+ FKLYDT+G P+++ ++ G+ + Sbjct: 359 ERFHETLHEGLAILSEVIQKEKAKGNRIISGEDVFKLYDTYGFPVELTEEYAEDEGME-V 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + +++QR RAR +GS + +L++ ++FIGY ++ Sbjct: 418 DHEGFEREMDKQRERARQARQDVGSMQVQG--GALRDIMTESEFIGYSDIK--------- 466 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + ++Q GE+V+ GQKV+ + ++TPFYAE+GGQ+GD G Sbjct: 467 --------------TETKIAELLQDGELVDLVQEGQKVQFILEKTPFYAESGGQIGDKGW 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +++TDV+K G +H IVE G ++ MS+ + + R+ + NH+ATHLL Sbjct: 513 VKSGDAAIRVTDVKKAPNGQHLHEGIVESGAIKKGMSVTAEVTERLRKDIVKNHTATHLL 572 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV+Q GS +T LRFD +H +T EL+ IE VN+ I ++PV + Sbjct: 573 HQALKDVLGTHVNQAGSLVTDSRLRFDFSHFGQVTKEELEQIETKVNEKIWASIPVQIDL 632 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +A A GA AL G KY D VRVV V G +S LCGG HV +T EI L IVSE Sbjct: 633 KPIAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVRNTAEIGLFKIVSE 687 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG RRIEA+TGQ A + + E L+ A LK + V R+E + + + Q Sbjct: 688 SGIGAGTRRIEAVTGQGAYEEMNAKLELLEQAAEVLKTNVKEVPKRIEALQSDLKDAQRE 747 Query: 774 HAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828 + +L ++ K+ +++ + + +V++K+ L++++D L+ K+ S +I+L Sbjct: 748 NESLLAKLGNKEAGEILEKVKEIDGIKLLAEKVNAKDMNHLRTMVDDLKAKLGSAVIVLG 807 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + E K ++ VT+DL++R F+A L + A+ GGGGGGRP MAQ+GG + + Sbjct: 808 AVQNE-KVNISAGVTKDLIERGFHAGKLVKQVAEAC-GGGGGGRPDMAQAGGKQPERLAE 865 Query: 888 AIAGVASFLK 897 A+A ++K Sbjct: 866 ALASAEEWVK 875 >gi|161502129|ref|YP_001569241.1| hypothetical protein SARI_00146 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863476|gb|ABX20099.1| hypothetical protein SARI_00146 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 784 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 348/805 (43%), Positives = 492/805 (61%), Gaps = 56/805 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+ +W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTGENWFALPKERLWVTVYETDDEAYGIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NY+IDLF+ LI+A +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRTLIEAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA EL + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERDIK-VDEAGFETAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVNGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 VE +GQ+ VV DQTPFYAE+GGQ+GD G G G + D QK + I H + Sbjct: 388 VEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGVGFTFAVNDTQKYGQAIG-HLGKLS 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ + +D R ++ +NHSATHL+H AL +LG+HV+Q GS ++ LRFD Sbjct: 447 AGALKVGDVVQADVDEARRARIRLNHSATHLMHAALRQVLGAHVAQKGSLVSDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + +E++ +ED VN I +NLP+ T IM E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPSEIREVEDLVNAQIRRNLPIETHIMELEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH TG+I L I+SES AG+RRIEA+TG+ A + + Q ++ Sbjct: 567 -----GDFSTELCGGTHARRTGDIGLFRIISESGTAAGVRRIEAVTGEGAMATVHAQSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K D+N + Sbjct: 622 LNDIAHLLKGDSQNLGDKVRAVLERSRQLEKELQQLKDQAAAQESASLSSKAVDLNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 ++SE V+ K L++++D L+ ++ S +I+L + E K S++ V++D+ R A +L Sbjct: 682 LVSELAGVEPKMLRTMVDDLKNQLGSTVIVLATVV-EGKVSLIAGVSKDVTGRVKAGELI 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 + A+ + GG GGGRP MAQ+GG + Sbjct: 741 GMVAQQV-GGKGGGRPDMAQAGGTD 764 >gi|86606529|ref|YP_475292.1| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab] gi|123738092|sp|Q2JTG8|SYA_SYNJA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|86555071|gb|ABD00029.1| alanyl-tRNA synthetase [Synechococcus sp. JA-3-3Ab] Length = 883 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 357/906 (39%), Positives = 527/906 (58%), Gaps = 68/906 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 ++IR FL+F+ + GH++LPS+SL+P DPT++ T +GM+PFK IF G + P Y VTT Sbjct: 8 AAIRQAFLDFYAQRGHQVLPSASLVP-EDPTVLLTIAGMLPFKPIFLGHQDPQYPRVTTA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F L R Sbjct: 67 QKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWELVTEVFGLPPER 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-----Q 179 L ++V+ EDEEAF LW+ G+ +I R+ DNFW+ TGPCGPCSEI++D Sbjct: 123 LVVSVFREDEEAFALWRDAIGIPPHRIRRMGEEDNFWAAGPTGPCGPCSEIYYDFKPELG 182 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 E I G + R++EI+NLVFM+ + ++ L + +IDTG+GLER+A VLQ Sbjct: 183 DEQIDLG------DDSRFLEIYNLVFMELNRDSEGRLTPLARQNIDTGLGLERLAQVLQG 236 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 NNY+ DL ++Q + ++ + Y V+ +VI DH R+ LIADG++P+N Sbjct: 237 VPNNYETDLIFPIVQKAAEIARVDYFQASPEQKVSLKVIGDHARAVMHLIADGVIPSNVD 296 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RR + + RLLG EP + ++ +AYPE+ + + +I+ L+ E+E Sbjct: 297 RGYVLRRLIRRMVRHGRLLGIGEPFTLPVVETAIQLAEAAYPEVREREAVIKAELQREEE 356 Query: 357 RFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 +F KTL+RG LL + +++ G + ++G AFKL+DT+G PL++ Q+I RG + + Sbjct: 357 QFLKTLERGERLLFDLFANVTASGAPKQISGADAFKLFDTYGFPLELTQEIAQERGFS-V 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F Q +E+QR RARA L T + L E T+F+GY Sbjct: 416 DVQGFEQEMEKQRQRARAAHQTLDV-TAQGSLDELAEFLIETEFLGYS------------ 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + +V+A++ +G+ V + +GQ V+VV D+TPFYAE+GGQ+GD G Sbjct: 463 -----------QSSARGVVEALLVEGKSVPQVEAGQSVQVVLDRTPFYAESGGQIGDRGY 511 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 GDG+ +++ DVQK+ + +FVH VERGILR + ID RR+ +H+ATHLL Sbjct: 512 LAGDGVLVRVEDVQKRGD-LFVHFGWVERGILRVGDPVQAQIDLACRRRAQAHHTATHLL 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL ++ +SQ GS + D LRFD T S+P+T EL+ +ED VN IA+ P I Sbjct: 571 QAALKKVVDPSISQAGSLVAFDRLRFDFTLSRPLTPEELQQVEDLVNTWIAEAHPAQVSI 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +A A GA A+ G KY VRVV GV S LCGGTHVS+T EI L I+SE Sbjct: 631 MPLAEAKARGAIAMFGEKYGAEVRVVDFP----GV-SMELCGGTHVSNTAEIGLFKIISE 685 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 S + AGIRRIEA+ G +L +D ++ L++ K + RV + E + Q Sbjct: 686 SGVAAGIRRIEAVAGPAVLEYLNERDSVVRELSAQFKAKPQEIPERVAALQAELKAAQRA 745 Query: 772 LIHAKRKLQ-LNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L A+ +L L E L +A ++ ++ + + LK+ + L K+ G ++L Sbjct: 746 LEEARSQLALLQAERLLPQAVAVGNLQILAAELGSTPPEALKTAAEHLLHKLGEGAVVLG 805 Query: 829 GISKEKKASVLIVVTEDL----LDRFNAV-DLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 + + K S++ + + L + + ++A+L+ GGRP++AQ+GG Sbjct: 806 SVPEAGKVSLVAAFSPAVQKLGLKAGSFIGEIAKLTGGGG-----GGRPNLAQAGGKQPE 860 Query: 884 KADQAI 889 K QA+ Sbjct: 861 KLAQAL 866 >gi|162453400|ref|YP_001615767.1| hypothetical protein sce5124 [Sorangium cellulosum 'So ce 56'] gi|205830212|sp|A9FRF5|SYA_SORC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|161163982|emb|CAN95287.1| alaS [Sorangium cellulosum 'So ce 56'] Length = 917 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 353/939 (37%), Positives = 519/939 (55%), Gaps = 84/939 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R TFLEFF + GHE++PS+ L+P NDPTLMF N+GMV FK++FTG+++ YQ + QK Sbjct: 12 LRRTFLEFFAQRGHEIVPSAPLVPQNDPTLMFVNAGMVQFKDVFTGKDRRPYQRAASSQK 71 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+NVG T RH TFFEMLGNFSFG YFKE AI AW+LLTK +D+ RL Sbjct: 72 CIRISGKHNDLENVGVTARHQTFFEMLGNFSFGDYFKEDAIAFAWELLTKVYDISPSRLV 131 Query: 127 ITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +T+Y+ D+EA +W+K++G D+I+R+ DNFW+M + GPCGPCSEI F G Sbjct: 132 VTIYNGEGGFPADDEAAAIWRKVTGFGDDRILRLGLADNFWTMGDVGPCGPCSEIHFFHG 191 Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMATVL 237 + G +G + EIWN VFMQ+E+ K + LP SIDTGMGLER+A+VL Sbjct: 192 KEPDVARFGEEPRIDGTGWTEIWNNVFMQYERAEKDGPLVPLPAPSIDTGMGLERLASVL 251 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPAN 294 Q T+NYD DL + L+ + +++G Y G ++ V+ RVI DH R+++FLIA+G++P Sbjct: 252 QGVTSNYDTDLLRGLVDKAAELSGKPYSGGSADDDVSMRVIADHARTAAFLIAEGVMPEK 311 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 + R YVLRR+MRRA+ + LG P + + + MG YPEL + LI E Sbjct: 312 QRREYVLRRVMRRAIRHGHRLGIDRPFLHEVALEVVRRMGETYPELRDRRELIARVTEDE 371 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + RF TL RG+ +LD + + L A LY T+G PLD+ Q ++ A Sbjct: 372 EVRFRSTLKRGMKILDERFDEMRSSGERTLPAAAAADLYTTYGFPLDLTQ-VISAESNFD 430 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D+ Q + A G G + T + +E Sbjct: 431 VDV---------QGAEAIIKGAGEADGPIDP-----------TAAV-------DPAHREA 463 Query: 473 RKVLCQKPPIDLT-----NGVSSIVKAIVQ---QGE---------IVEEAVSGQKVEVVF 515 R L Q P+ T G S IV AIV+ QGE +VE A +G VE+V Sbjct: 464 RAKLAQ--PVVFTGYEHEEGDSEIV-AIVRVEIQGEGDRARKVRALVERAEAGAAVEIVV 520 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +TPFYAE+GGQ+GD G DG R+++ D QK G+ VH +V G L + L + Sbjct: 521 RETPFYAESGGQVGDVGEVTADGARVEVKDTQKPLAGLVVHEGVVHEGALAVGQRVHLAV 580 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D+ R NHSATH+LH AL +LG H Q GS + PD LRFD TH++P+T E+ I Sbjct: 581 DHAARSATRRNHSATHVLHWALRKVLGEHAQQKGSRVGPDVLRFDFTHNRPLTREEISRI 640 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 ED VN+ + N V T I+ ++A GA A+ KY D VR++++ E LCG Sbjct: 641 EDLVNEKVLTNAKVTTEILAMDEARRRGAMAIFEEKYGDTVRMLTMTPE-----VVELCG 695 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTH + G+I L I SE + AG+RRI A TG A ++ G + +L K G+ Sbjct: 696 GTHACALGDIGLFKITSEGGVAAGVRRILASTGLNALAYARGVEAELARARQVAKAQGGD 755 Query: 756 VVGRVEEIWEEYRKLQ--LIHAKRKL-------------QLNVEDLSCHKIADVNFMSHI 800 + ++ +I R+L+ + +R++ ++ I + ++ Sbjct: 756 LAEKIGKIVAHERELEKKVAELERRILEGAGPAQGGGGGGIDAMLDGARDIGGIKVLARR 815 Query: 801 ISE-VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859 + + + L+ + + L+ K+ +L+G + KA + +++++ +R A +L + Sbjct: 816 VPDGTNPGALRDLAEKLRDKLGDRSAVLLGAAVGDKAQLAVMLSKSATERLKAGELIKPI 875 Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A+++ GG GGGRP MAQ+GG + + D AIA + + +++ Sbjct: 876 ARIV-GGSGGGRPDMAQAGGTDVAQLDAAIAALYTEVER 913 >gi|219847052|ref|YP_002461485.1| alanyl-tRNA synthetase [Chloroflexus aggregans DSM 9485] gi|219541311|gb|ACL23049.1| alanyl-tRNA synthetase [Chloroflexus aggregans DSM 9485] Length = 894 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 367/920 (39%), Positives = 523/920 (56%), Gaps = 57/920 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TF+ FF+++GH +PSSSL+ +DPTL+F NSGMV FK++F G+E+ Y Sbjct: 5 TAAQIRETFISFFKRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYTRAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI+LAW LLT+EF L Sbjct: 65 TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIRLAWKLLTEEFQLPV 124 Query: 123 RRLYITVY---DE---DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL+ TV+ DE D+EA LW G +++R DNFW M +TGPCGPCSEI Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIA-QGADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183 Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G+ + G + + Y+EIWN VFMQ+++ Q LP+ S+DTGMGLERMA Sbjct: 184 IYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRATMQP---LPRPSVDTGMGLERMAM 240 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293 V+Q + YD DLF +I V G E +R I DH R+ +FLIADG+LP Sbjct: 241 VMQGVHSTYDTDLFVSIINRIIAVRGSDEEHYQAHRSAYRAIADHSRAIAFLIADGVLPG 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N GR YVLRRI+RRA R +G+ P + ++ + +MG YPEL+ + LI Sbjct: 301 NLGRPYVLRRILRRAAYQGRTIGFERPFLAEVITTVIDQMGEVYPELVNRRELILSAADQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ +F +TL GL L+ V+ + + ++ G AF L DT+G PLD+ Q I +GL Sbjct: 361 EERQFLRTLSGGLSRLNAVIEQVRTRGETVIPGTDAFVLKDTYGFPLDLTQKIAAEQGLT 420 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + A+ EQR+R+RA + G G + +W L A+ F GY+ L Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAAGKRGGEAD-LWAEL--DLPASHFTGYERL-------S 469 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 DR + V ++ G+ + A+ G++V++V D TPFYAE+GGQ+GDT Sbjct: 470 DR----------------ATVIGMLADGDAITSAMVGRQVQIVLDTTPFYAESGGQVGDT 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +G +QI D ++ G+ VH+ V G + + T+D R + NH+ATH Sbjct: 514 GVLVGPEGSVQIEDTRRPLPGLIVHYGRVVSGTIHVGDQVQATVDMVRRADIQRNHTATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +L AL +LG H +Q GS + PD LRFD TH+KP+ EL+ IE +N + + V Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKPLDPEELREIERRLNAWVRADASVRW 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG---GVHSS----ALCGGTHVSSTGE 704 I AIA GA AL G KY D VRVV++E G G ++S LCGGTHV+ TGE Sbjct: 634 EITGYRSAIARGAIALFGEKYGDTVRVVTIERGTGIENGEYASRDSLELCGGTHVNRTGE 693 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + I+ E SI +GIRR+EA+TG+ A Q + L+ LA+ + ++ R+E + Sbjct: 694 IGFVRILGEGSIGSGIRRVEALTGRGAELWAEEQAQTLRDLAARINAQPAQLIERIEALL 753 Query: 765 EE--YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKK 819 E R+ +L + KL + D H+ V + + +EV++ + L+ + + L+ K Sbjct: 754 AENRQRRQELEALRSKLAREMLDTLVHRTQTVAGIPLLAAEVEADSVERLREMGEYLRDK 813 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + S +I+L G K +L +VT DL+ R NAV + + A ++ GGGGGGRP +AQ+G Sbjct: 814 LGSAVIVL-GAQINGKPQLLTIVTSDLVKRGLNAVHIVKPLAAIV-GGGGGGRPEIAQAG 871 Query: 879 GPNGNKADQAIAGVASFLKK 898 G ++ AI L + Sbjct: 872 GRTPDRLAAAITAAVDVLAE 891 >gi|237736819|ref|ZP_04567300.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817] gi|229420681|gb|EEO35728.1| alanyl-tRNA synthetase [Fusobacterium mortiferum ATCC 9817] Length = 866 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 356/908 (39%), Positives = 536/908 (59%), Gaps = 64/908 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF+K H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Y VTT Sbjct: 5 NQIRKEFIEFFKKKNHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK +R NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI +W+ +T+ LD+ + Sbjct: 64 QKSIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIVWSWEFVTEVLGLDKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+++V+ D+EA K+W + ++I+R+ ++N+W+ TG CGPCSEI D G Sbjct: 120 LWVSVFTTDDEAEKIWIEKCNFPKERIVRLGEDENWWAAGPTGSCGPCSEIHVDLGPAY- 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+ ++Q K Sbjct: 179 GGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERVTAMVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NN++ DL L++ + ++T KY + + +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 SNNFETDLLFPLVEEAGRLTNTKYGEDKEKDFSLKVITDHSRAVTFLINDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG +E + ++ + M AYP+L I++ ++ E+E+F Sbjct: 299 YVLRRILRRAVRHGRLLGQSELFLYKMVDKVVEMMNEAYPDLNDNLEHIKKVVKIEEEKF 358 Query: 359 GKTLDRGLVL----LDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +TLD+G+ L ++ V S GK L+GD+ F+LYDT+G P ++ ++I +G+ + Sbjct: 359 SRTLDQGIQLVNQEIEKVKSEGGKK--LSGDITFRLYDTYGFPYELTEEICEEKGVE-VS 415 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F +EEQ+ +ARA + + +KYGAT F+GY+ L KE K Sbjct: 416 REEFEAKMEEQKEKARAAREVVMEKGQDSFIEEFYDKYGATNFVGYETL------KETAK 469 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +L + E G+ + ++FD TPFY E+GGQ D G Sbjct: 470 LLS------------------------IREGKDGKTL-MIFDTTPFYGESGGQTADIGVI 504 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+G ++ DVQK+ +GIF H + +G + +L +D NR + NH+ATHLLH Sbjct: 505 SGNGFEGKVVDVQKQ-KGIFTHTVEIVKGEAKEGEEYLLEVDEMNRLATAKNHTATHLLH 563 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + LRFD H + +TS E++ +E+ VN+ IA++L V R M Sbjct: 564 KALREVLGTHVQQAGSLVNGQRLRFDFNHYEAMTSEEIEKVENLVNEKIAESLCVTVRNM 623 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + ++A GA AL G KY D VRVV V+ S LCGGTH+ + +I L I SES Sbjct: 624 SMDEAKKEGAMALFGDKYGDVVRVVKVD-----DFSIELCGGTHIDNIAKIGLFKIESES 678 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KL 770 I AG+RRIEA+TG A + + LK +A +K + NVV RVE++ E R ++ Sbjct: 679 GIAAGVRRIEAVTGLGAYELVKKMERTLKEIAKTVKSDEANVVERVEKMTETLRENSKEI 738 Query: 771 QLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + + AK + + + +I V + + ++EL+ ++D+L+ K+ S +++L Sbjct: 739 ETLKAKITNYEAGSLNAAAEEINGVKVVIKTFKDKTAEELRQMVDSLKDKLGSCVVVLA- 797 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S E KA + VT+DL+ + A +L + +A++ GG GGGRP AQ+GG + +K ++A+ Sbjct: 798 -SGEDKAVFAVGVTKDLIGKVKAGNLVKEAAQI-AGGNGGGRPDFAQAGGKDASKIEEAV 855 Query: 890 AGVASFLK 897 A V LK Sbjct: 856 AKVRETLK 863 >gi|154174082|ref|YP_001408546.1| alanyl-tRNA synthetase [Campylobacter curvus 525.92] gi|205830012|sp|A7GZA4|SYA_CAMC5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|112803074|gb|EAU00418.1| alanyl-tRNA synthetase [Campylobacter curvus 525.92] Length = 852 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 372/906 (41%), Positives = 535/906 (59%), Gaps = 67/906 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQ 59 M N+ +R +L FF+ GHE+ PS+ L+P ND TL+FTN+GMVPFK+IFTG+ +P Sbjct: 1 MQNLD-VREAYLNFFKSKGHEITPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPP 58 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T+ Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ Sbjct: 59 IRTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAIAYAWEFVTQVLK 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L RLY+TV++ D+EAF+LW + ++ D+I R +DNFW M +TGPCGPCSEIF+DQ Sbjct: 119 LPVDRLYVTVHESDDEAFELWAR--HIARDRIYRFGDHDNFWQMGDTGPCGPCSEIFYDQ 176 Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 G E GG +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER Sbjct: 177 GGEHFNTPEDYMGG------DGDRFLEIWNLVFMQYERSADGKLSPLPKPSIDTGMGLER 230 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + +++ K +NYD LF LI ++ G Y ++ ++RVI DH+RS +FL+A G Sbjct: 231 VTAIMEGKFSNYDSSLFMPLIDEVAKLCGKPYSYDSGASYRVISDHIRSVTFLLAQGTTF 290 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 EGRGYVLRRI+RRA+ + LLG EP M L+ +C MG Y L + K ++E +R Sbjct: 291 DKEGRGYVLRRILRRAIRHGYLLGIKEPFMYKLVDKVCEMMGGHYTYLNEKKAAVKEQVR 350 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ERF T+ GL L + L+ EI +G+ AFKLYDT+G PLD+ D+L +GL Sbjct: 351 LEEERFLATIASGLELFNEELAK--TKEIFSGETAFKLYDTYGFPLDLTADMLREKGLK- 407 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F++ + EQ++RA+A G G +++ + L E++G +F GYD L + Sbjct: 408 VDEAKFDELMSEQKARAKAAWKGSGDKSSKGDFKQLLEEFGENKFSGYDEL--------E 459 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 R+ S I+ + + V+ +G+ V+FD TPFYA++GGQ GDTG Sbjct: 460 RQ--------------SKILALLDNDFKRVQNLRAGESGWVMFDVTPFYAQSGGQTGDTG 505 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G G ++ D Q K G+ + V + I +T L L + R +++ +HSATHL Sbjct: 506 EITGVG---KVLDTQ-KFHGLNLSQVEVGKQI-KTGDVLNLKVS-DARAEIARHHSATHL 559 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL ILG+HV+Q GS + D LRFD +H K +TS EL+ IE VND +A + T Sbjct: 560 LHAALRKILGTHVAQAGSNVEADRLRFDFSHPKALTSEELEMIEKFVNDAVASSAAAKTE 619 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E A SGA AL G KY + VRV+S+ G S LCGGTHV + EI +I Sbjct: 620 IMDIEAAKNSGAIALFGEKYAENVRVLSL-----GNVSKELCGGTHVKNVSEIGAFFITK 674 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEA+ + A + G +L +++ LK ++ V ++++ E R+L Sbjct: 675 ESGVSAGVRRIEAVCSRAALNLARGFRSELAEISNELKTNEPMVA--IKKLKGEVREL-- 730 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K KL+ N+ D +N ++ V S ++K+++D + + S I+L+ ++ Sbjct: 731 ---KDKLK-NIGDSHAIAFTSINDTKMGVAVVKSGDIKTMIDNYKNEFASLAILLLQVND 786 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +K A V + A + +++AK+L G GGGR A +GG N + A+ Sbjct: 787 DKIAIAAGVKNAPI----KAGEWVKMAAKIL-DGNGGGRDDFATAGGKNVPMIETAVKEA 841 Query: 893 ASFLKK 898 F K+ Sbjct: 842 FEFAKE 847 >gi|264678535|ref|YP_003278442.1| alanyl-tRNA synthetase [Comamonas testosteroni CNB-2] gi|262209048|gb|ACY33146.1| alanyl-tRNA synthetase [Comamonas testosteroni CNB-2] Length = 834 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 341/811 (42%), Positives = 478/811 (58%), Gaps = 54/811 (6%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MFTNSGMV FK++F G +K Y T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+ Sbjct: 1 MFTNSGMVQFKDVFLGTDKRPYNRATSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNW 60 Query: 97 SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT 156 SFG YFK+ +I+ W+LLTK F L +L TVY ED+EA+ +WK + GL A++IIRI Sbjct: 61 SFGDYFKKESIEWGWELLTKVFGLPAEKLLATVYHEDDEAYDIWKNVIGLPAERIIRIGD 120 Query: 157 N-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQF 208 N DNFW MA+TGPCGPCSEIF+D GE I GG PGS E+G+R+IEIWN VFMQF Sbjct: 121 NKGGKYKSDNFWMMADTGPCGPCSEIFYDHGEHIAGGPPGSPDEDGDRFIEIWNHVFMQF 180 Query: 209 EQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN 268 + + LP +DTGMGLER+A +LQ +NY+IDLF+ LI+A+ + T E + Sbjct: 181 DMKEDGSVVKLPAPCVDTGMGLERLAAILQHVHSNYEIDLFQALIKAAGRETST--EDLS 238 Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328 + +VI DH+R++SFL++DG++P+NEGRGYV RRI+RRA+ + LG P L+ Sbjct: 239 TPSLKVIADHIRATSFLVSDGVIPSNEGRGYVQRRIIRRAIRHGYKLGQKTPFFHKLVAD 298 Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388 L +MG AYP+L + + I L++E+ERF +TL G+ +LD L+ G ++L GDVAF Sbjct: 299 LVVQMGDAYPKLKEQEAHITSVLKAEEERFFETLANGMEILDSALA--GDVKVLPGDVAF 356 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 KL+DT+G PLD+ D+ RG+ +D FN A++ Q+ ARA K+ +L Sbjct: 357 KLHDTYGFPLDLSNDVARERGVT-VDEAGFNAAMQHQKETARA-------AGKFKMDRAL 408 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 + A F GYD L E K++ A+ G V E +G Sbjct: 409 EYTGDANVFTGYDKL------AEAAKIV-----------------ALYADGVSVNELKAG 445 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 Q VV D TPFYAE+GGQ+GD G G R + D K +F HH ++E G L+ Sbjct: 446 QSGVVVLDTTPFYAESGGQVGDQGVIAAGGNRFAVEDTLKIKADVFGHHGVLEAGSLKVG 505 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 ++ +D R NHS TH++H AL +LG HV Q GS + + RFD H+ P+T Sbjct: 506 DAVEAQVDTAVRAATMRNHSVTHIMHKALREVLGGHVQQKGSLVNAERTRFDFAHNAPVT 565 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 + +++ IE VN + N R+M+ E A +GA L G KY + VRV+ + Sbjct: 566 AEQIREIEARVNAEVLANTATDARVMDIESAQKTGAMMLFGEKYGETVRVLDIG------ 619 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S LCGGTHVS TG+I L +V ES + AG+RRIE ITG+ A ++L + + A+ Sbjct: 620 SSRELCGGTHVSRTGDIGLFKVVGESGVAAGVRRIEGITGENALAYLQSLESTVDQAAAA 679 Query: 749 LKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISE 803 K + R+ ++ + L ++ K KL + D + ADVN ++ + Sbjct: 680 FKAPAAELTNRIGGALDQIKALEKEIAALKGKLASSQGDELATQAADVNGVKVLAAKLEG 739 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 D+K L+ MD L+ K+ + +I+L + +K Sbjct: 740 ADAKTLRDTMDKLKDKLGAAVIVLAAVDGDK 770 >gi|322382967|ref|ZP_08056799.1| alanyl-tRNA synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153087|gb|EFX45545.1| alanyl-tRNA synthetase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 882 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 355/916 (38%), Positives = 535/916 (58%), Gaps = 66/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR+ +L FF GH++ PS+SL+P ND +L++ N+GM P K F G+ P + Sbjct: 11 ASEIRSKWLNFFASKGHKVEPSASLVPHNDASLLWINAGMAPLKPYFDGRIIPENPRIVN 70 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QKC+R ND++NVG+T RHHTFFEMLGNFS G YFKE+AI AW+ LT K + Sbjct: 71 AQKCIRT----NDIENVGKTRRHHTFFEMLGNFSIGDYFKEQAITWAWEFLTDPKWIGFE 126 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R+ +TVY ED+EAF LW GL ++I ++ +DNFW + E GPCGPC+EIF+D+GE Sbjct: 127 PERISVTVYKEDQEAFDLWHNKIGLPEERIYKLG-DDNFWGIGE-GPCGPCTEIFYDRGE 184 Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 C PGG E ER++E+WNLVF QF LP +IDTG GLER Sbjct: 185 AYGDLSDPECWPGG------ENERFLEVWNLVFSQFNHNKDGSYTPLPSKNIDTGAGLER 238 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 A +LQ +N+D DLF+ +IQ + + + Y+ + +VI DH+R+ +F + DG+ Sbjct: 239 FAAILQNVDSNFDTDLFQPMIQKTCGLAKVSYKEKEETDIALKVIADHIRTVAFSVGDGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYV+RR++RRA+ Y ++LG +P M L+PALC MG Y E+++ + IE+ Sbjct: 299 LPSNEGRGYVIRRLLRRAVRYGKVLGMDKPFMYQLVPALCDVMGMYYTEIVEKQEFIEKI 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R+E+ERF +TL GL +L +++ K + + G AFKLYDT+G P+D+ +D + Sbjct: 359 IRTEEERFHETLSDGLEILSHLVAEARKKGMTQIGGQDAFKLYDTYGFPIDLTEDFAAEQ 418 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F +++EQR RARA S + L + ++F+GY+ Sbjct: 419 GMT-VDKEGFEASMQEQRERARAARQDTDSMNVQG--GPLADFTDKSEFVGYN------- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 DL V + + A++ +V+ G+ +VV D+TPFYAE+GGQ+ Sbjct: 469 --------------DLV--VPAKIIALMHNNTMVDIVNEGEICQVVLDRTPFYAESGGQV 512 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G L++ +V K G VH +VE+G R ++D R + NH+ Sbjct: 513 SDKGTIRYGETLLRVEEVGKAPHGQHVHTVLVEKGTARVGAETEASVDPSLRGDIVKNHT 572 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL+ +LG HV+Q GS + LRFD +H IT EL+ +E VN+ I QN+P Sbjct: 573 ATHLLHKALNEVLGEHVNQAGSLVAQQRLRFDFSHFGSITEEELQEVERKVNEQIWQNIP 632 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V+ ++M ++A A GA AL G KY VRVV V G +S LCGG HV++T EI Sbjct: 633 VIIKLMPIDEAKAMGAMALFGEKYGKVVRVVRV-----GDYSLELCGGCHVANTAEIGQF 687 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I +G+RRIEA+ G+ A +++ Q LK A LK +V RV+ I + + Sbjct: 688 KIVSESGIGSGVRRIEAVAGKHAYTYMEDQIRLLKETAVLLKSKVADVPKRVDSILSQMK 747 Query: 769 KL-QLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +L + I + R ++E S ++ + ++ ++ D L+ + D ++ +I SG Sbjct: 748 ELNREIESLRSKLSHIEAGSLTDQIKEVGGIKLLAAEVNAADMDSLRQLADEMKAQIGSG 807 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L G + +K +++ VT+DL + +A + + +A + GGGGGGRP MAQ+GG + Sbjct: 808 VIVL-GAASGQKVNLVAAVTQDLTKKGLHAGQIVKAAASIC-GGGGGGRPDMAQAGGKDP 865 Query: 883 NKADQAIAGVASFLKK 898 +K +A+ V +++++ Sbjct: 866 SKLKEALLYVETYIQQ 881 >gi|320161086|ref|YP_004174310.1| alanyl-tRNA synthetase [Anaerolinea thermophila UNI-1] gi|319994939|dbj|BAJ63710.1| alanyl-tRNA synthetase [Anaerolinea thermophila UNI-1] Length = 911 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 361/924 (39%), Positives = 531/924 (57%), Gaps = 57/924 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR TF++FF + GH +PSSSL+P D TL+FTN+GMV FK++F G + Y QK Sbjct: 9 IRQTFIDFFVQRGHTFVPSSSLVPGGDQTLLFTNAGMVQFKDVFLGTDHRPYSRAVNSQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDLD+VGR + HHTFFEMLGN+SFG Y+K+ AI AW+LLT+ + LD RLY Sbjct: 69 CMRVAGKHNDLDDVGRDDTHHTFFEMLGNWSFGDYYKKEAIAWAWELLTQVYQLDPARLY 128 Query: 127 ITVYDE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 T + + DEEA ++W+ + + ++ DNFW MA+TGPCGPCSEI D+ Sbjct: 129 ATCFKDEKGDIPTDEEAAEVWRSQPNFNPEHVLFFGRKDNFWEMADTGPCGPCSEIHIDR 188 Query: 180 GE--CIPGGLPGS----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 G C G+PG + + +R++EIWNLVF+Q+ + + E LP+ +DTGMG ER+ Sbjct: 189 GPEACDKKGVPGHVCRVNGDCKRFLEIWNLVFIQYNRLSPTELEPLPQRHVDTGMGFERL 248 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 ++LQ ++NY DL L+Q ++++TG NI +RVI DH R+++FLIADG++ Sbjct: 249 VSLLQGVSSNYRTDLLWPLLQKTQELTGHTDAEREANITPYRVIADHARAATFLIADGVV 308 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N GR YV R I+RRA + +G EP + + + G YPEL++ + I + + Sbjct: 309 PGNTGRNYVCRMIIRRAARFGGKIGLKEPFLAKVAEVVIQNYGDFYPELVRNRTAILDGI 368 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL-GKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+ERF +TL+ G+ L L L GK E IL+G AF LY THGLPL++ +DI +G Sbjct: 369 TREEERFQRTLESGMKELQESLDGLKGKGEKILDGKKAFDLYATHGLPLELTRDIAQEQG 428 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS--K 467 L +D F A+EE H L G+G + +G DL R + Sbjct: 429 L-DVDQQGFRDAMEE-------HRLASGAG----------KAFGPLGGEDVDLYRPALES 470 Query: 468 FMKEDR--KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 E + K + P + V + A+ ++G+ V +G +VEV+ +T FY EAG Sbjct: 471 LQAEGKLGKAGVEYNPYEWLE-VEGELLALFREGQRVSSVSAGDQVEVLLPRTGFYVEAG 529 Query: 526 GQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GQ+ D G + +++T+++K A G+ VH V RG ++ +D Q RR Sbjct: 530 GQVSDAGTIVSVNEPRWEIRVTEMRKPAAGVIVHVGEVVRGTPTVGDWVIARVDTQRRRD 589 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NH+ATHLLH L +LG H Q GS + PD LRFD TH +P+T +L+ IE VN Sbjct: 590 IMRNHTATHLLHAELQEVLGEHARQAGSLVAPDRLRFDFTHPEPLTPEQLERIEAGVNRA 649 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I +N+P+ TR+ ++AIA GA AL G KY + VR V + D S LCGGTHV T Sbjct: 650 ILENIPLQTRVKPLQEAIAEGAMALFGEKYGEVVRTVMIGETD--PLSYELCGGTHVHET 707 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I L IVSE S AG+RRIEA+TG+ A + + ++ A L S V RVE Sbjct: 708 GDIGLFLIVSEGSAAAGVRRIEAVTGRGAYELVQKRFRNMRKTAEMLSASMDEVPERVEN 767 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSKELKSVMDA 815 + +E L+ A L+ V L+ + I DV ++ +I VD+ L+S+ D Sbjct: 768 LLDEMSILR--KAVASLRQQVASLAFDQDLEKVTFIEDVAVLTSLIQGVDADTLRSLADR 825 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 +++ +G+++L + + K ++ VT+DL+ R F+A DL + + GGGGGGRP + Sbjct: 826 FRQRYSTGVVVLASVV-DGKPVIIGAVTDDLVKRNFHAGDLVK-RVAAVVGGGGGGRPTL 883 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ+GG + ++ +A+ ++K+ Sbjct: 884 AQAGGRDVSRLSEALDQTYGYVKE 907 >gi|257126597|ref|YP_003164711.1| alanyl-tRNA synthetase [Leptotrichia buccalis C-1013-b] gi|257050536|gb|ACV39720.1| alanyl-tRNA synthetase [Leptotrichia buccalis C-1013-b] Length = 871 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 346/914 (37%), Positives = 536/914 (58%), Gaps = 72/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +F++FF+ H+ S+SLIP +D +L+ T +GMVPFK F G+++ ++ +TT Sbjct: 4 NEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRITTY 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK L++ R Sbjct: 63 QKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLEEDR 118 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD---QGE 181 L+++VY D+EA+++W K G+ A++I+R+ DN+W+ G CGPCSEI++D G+ Sbjct: 119 LWVSVYKTDDEAYEIWNKEIGVPAERIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQNMGK 178 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 ++G+R++EIWNLVF ++ + LP+ +IDTG GLER+A+V+Q K Sbjct: 179 NNEEADRKPGDDGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQNKD 238 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 NN+D DLF ++ + + V ++ +GN N ++I DH+R+S FLI DG+LP+NEGRGY+ Sbjct: 239 NNFDTDLFTNITKGIKSV--LEIQGNENEEAIKIIADHVRASVFLIGDGVLPSNEGRGYI 296 Query: 301 LRRIMRRAM-----CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 LR+I+RRA ++ + + L+P + M AYPEL + + IE+ +R E+ Sbjct: 297 LRKIIRRAFGAGSAAKQKVFEKEDIFLYKLVPYVLETMNEAYPELAEKQEYIEKVIRLEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHL-GKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF TL G +L+ + L G+++ L ++ FKLYDT G P ++ + IL +G Sbjct: 357 ERFATTLKNGTEMLEEEIQKLKGENQKELPAELTFKLYDTFGFPFELTKLILENQGFEAS 416 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 + F + L EQ R++ + ++ EK+G T+F GY + +E Sbjct: 417 E-EEFEKKLAEQVQRSKDSRTTISDMIKDEFIDEFFEKHGKTEFTGY-----LQNYEEKS 470 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K+L I K+ E +SG E++FD+TPFYAE+GGQ+ DTG Sbjct: 471 KLL-------------HIAKS---------EGISG--YEMIFDKTPFYAESGGQVADTGI 506 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ +V KK + +F+H + RGI + + + ID R+ + NH+ATH+ Sbjct: 507 ITSGEFEGKVVNVVKKHD-VFIHQVEIIRGIAPAVGVEVKMQIDVNRRKDIQRNHTATHI 565 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH L LG+HV Q+GS + + LRFD +H + I+ ++ IE VNDII NL V Sbjct: 566 LHKVLRENLGTHVEQSGSLVDDEKLRFDFSHYEAISPEMIEKIEKGVNDIILSNLQVKIN 625 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 N EDA A GA AL KY D VRVV + DG +S LCGGTHV STGEI L I S Sbjct: 626 YENIEDAKARGAMALFSDKYGDIVRVVEI---DG--YSIELCGGTHVKSTGEIGLFNIES 680 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ I +G RRI A TG ++ +++ +EK+K ++ + + NVV +E+ + R Sbjct: 681 ENGIASGTRRITATTGHKSLNYVNRLEEKIKEISDIFRTDEKNVVDIIEKYIGDMRAAVK 740 Query: 773 IHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +H + + +L NVE ++ K+ +F+ + ELK ++D ++K+QS Sbjct: 741 VHEEMQTKLVKYEINEMLENVETVNGVKVLKRSFVDKNVD-----ELKEIVDRGKEKMQS 795 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 GI++L G + KA ++ VT+DL+ + A ++ +++A+V GG GGGRP AQ+GG NG Sbjct: 796 GIVIL-GTNNNGKAVFVVGVTKDLISKVKAGEIVKVAAQV-AGGNGGGRPDFAQAGGKNG 853 Query: 883 NKADQAIAGVASFL 896 + +A+ F+ Sbjct: 854 SAVKEAVEKAFEFV 867 >gi|308233742|ref|ZP_07664479.1| alanyl-tRNA synthetase [Atopobium vaginae DSM 15829] gi|328943732|ref|ZP_08241197.1| alanine--tRNA ligase [Atopobium vaginae DSM 15829] gi|327491701|gb|EGF23475.1| alanine--tRNA ligase [Atopobium vaginae DSM 15829] Length = 882 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 347/905 (38%), Positives = 513/905 (56%), Gaps = 58/905 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL FF+ G + SSSLIP DP+L+ N+GM FK + G + T Sbjct: 10 TTAEIREDFLSFFESKGCKRYESSSLIP-EDPSLLLANAGMNQFKEYYQGTKTMREIGAT 68 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDL 120 + QKC+R ND++N+G RH +FFEMLGNFSFGGY K +AI AW+ +T L Sbjct: 69 SCQKCLRT----NDIENIGDA-RHLSFFEMLGNFSFGGYTKAQAIAWAWEFITSPAHLGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY+TV+ +D+EA +LW++ G++ D I R+ DNFW+ TGPCGPCSEI+FDQG Sbjct: 124 PKDRLYVTVFTDDDEACELWQQ-QGVALDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQG 182 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G PG ++G+RY+E WNLVF QF++Q LP +IDTGMGLERMA ++Q + Sbjct: 183 PSFEGEKPG--DDGDRYLEFWNLVFTQFDRQEDGSMPELPHRNIDTGMGLERMAAIMQHE 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 +NY+ D+ + LI E+++ Y + V+ R++ DH R+ +F+I DGILP NEGRG Sbjct: 241 GSNYEGDVLRSLIGVGEELSHKTYHSSERVDTSLRILADHARAVTFMIGDGILPGNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA+ + RL+G + + M YP+L+Q K LIE + +E++RF Sbjct: 301 YVLRRLLRRAIYHGRLMGIEGSFLTKYSAEVMRLMAQVYPQLLQNKALIEGIISAEEQRF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLD G L L+HL +L G+VAFKL+DT+G P+D+ ++I G +D+ +F Sbjct: 361 TATLDAGEQALKDELAHLDAGSVLPGEVAFKLHDTYGFPIDLTREIALGLG-HDVDMDTF 419 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD--LLRGSKFMKEDRKVL 476 + +E+QRSRARA + GT+ +W L + + T F+GYD L G+ Sbjct: 420 EKLMEDQRSRARAQATRDAWGTSNSVWAKLSDSHEMTTFVGYDHNTLDGAH--------- 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 V A+V G V++ + +VEVV D TPFY E GGQ+GDTG Sbjct: 471 ---------------VVALVVDGASVDKVQANTRVEVVLDATPFYGERGGQVGDTGYLSN 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++L++ + + + H ++E+G L +L ID R + NH+ATHLL A Sbjct: 516 ESVKLRVENTLHREGELLSHECVLEQGTLAVGDTLNCAIDVHRRECIRRNHTATHLLDAA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HVSQ GS + PD LRFD TH + +T A++ +E VND I P+VTRIM+R Sbjct: 576 LIKVLGDHVSQAGSLVAPDRLRFDFTHFEALTPAQIAQVEQLVNDEIFAAEPMVTRIMSR 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A SGA L Y D VRVVS D +S LCGGTH +T +I I+SE+S+ Sbjct: 636 EEAKNSGAIQLFEDMYGDDVRVVSTGTSD-HPYSRELCGGTHARNTADIGCFKIISETSV 694 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 + +RR+EA+T ++ ++++L +A LK +VV RVE + +E L+ Sbjct: 695 GSNVRRLEALTSLGYIDYMKTREDELSQIACLLKCRPQDVVSRVEALKDEKNALE----- 749 Query: 777 RKLQLNVEDLSCHKIA----------DVNFMSHIISEVDSKELKSVMDALQKKI-QSGII 825 +K++ + S K++ D + + V K+L+SV D + +++ + Sbjct: 750 KKVKEALTGSSSQKVSSALENALDLGDYKVVLAHLEGVSGKDLRSVWDGIHQRLGEKSAC 809 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L+ + +K + + FNA L + A + G GGGRP MAQ+GG Sbjct: 810 VLLSATADKVQLLAAATQAAVDAGFNAGALIKNIAPCV-DGRGGGRPVMAQAGGNRVEGI 868 Query: 886 DQAIA 890 + A+A Sbjct: 869 NDALA 873 >gi|291545954|emb|CBL19062.1| alanyl-tRNA synthetase [Ruminococcus sp. SR1/5] Length = 880 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 367/912 (40%), Positives = 529/912 (58%), Gaps = 58/912 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FL+F + GH ++ S SL+P D +L+ N+GM P K FTG EKP VTT Sbjct: 6 VNELRKMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEKPPRTRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIHWSWEFLTEVVGLDAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y +DEEAF +W K G+ +++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSIYLDDEEAFNIWNKEVGIPSERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + + +RY+E+WN VF QFE L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D L ++ +YE N + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 241 SIFDVDTICALRNLVCEIAHKEYEKNYADDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + + YPEL + K I L +E+ +F Sbjct: 301 VLRRLIRRAARHGRLLGIEGTFLAKLSAQVIESSKAGYPELEEKKEFIFRVLTNEENQFN 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + K ++ L+GD AFKLYDT+G PLD+ ++IL +G GID Sbjct: 361 KTIDQGLRILSDMEEDMKKAGEKTLSGDNAFKLYDTYGFPLDLTKEILEEKGY-GIDEEG 419 Query: 418 FNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F +A+EEQR +AR + +G + + I ++ T+F+GYD L Sbjct: 420 FQKAMEEQRVKARTAREVTNYMGADATVYDDIDVNV-----TTEFVGYDHLT-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + + EIV+ GQK V +QTPFYA GGQ GDTG Sbjct: 467 ---------------FDSKVTVLTTETEIVDSLTEGQKGTVFVEQTPFYATMGGQEGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K G F H +E G++ + ++ L ++ + R+ NHSATHL Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGHMESGMISSGETVSLKVNEEARKDTEKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS +TPD LRFD H + +T+ EL++ E+ VN I L V T Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFQAMTAEELQATEELVNKEIQAGLDVHTD 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E+A SGA AL G KY+ +VRVVS+ G S LCGGTHV +T IML IVS Sbjct: 632 VMDVEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSKELCGGTHVKNTSSIMLFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG+RRIEA+TG+ + Q+E L A LK + VV ++ + E + LQ Sbjct: 687 ESGIAAGVRRIEALTGKAVIEYYRKQEELLHEAAKALKANTAEVVEKISHLQAEVKALQS 746 Query: 773 IHAKRKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K + L K+ +VN ++ + VD L+ + D L++++ G+++L Sbjct: 747 ENESLKSKAAQSALGDVMDKVVEVNGVKLLAAKVEGVDMNGLRDLGDKLKEQLGEGVVLL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++ + K ++L + T+ +A +L + A ++ GGGGGGRP+MAQ+GG N KA Sbjct: 807 AAVN-DGKVNLLAMATDAAQKAGAHAGNLIKAVATIV-GGGGGGRPNMAQAGGKNPEKAQ 864 Query: 887 QAIAGVASFLKK 898 +A+ A L+K Sbjct: 865 EAMDAAAGILEK 876 >gi|225873568|ref|YP_002755027.1| alanine--tRNA ligase [Acidobacterium capsulatum ATCC 51196] gi|225793929|gb|ACO34019.1| alanine--tRNA ligase [Acidobacterium capsulatum ATCC 51196] Length = 982 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 376/1014 (37%), Positives = 550/1014 (54%), Gaps = 163/1014 (16%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR TFL FF+ GH + SSSL+P NDPTL+FTN+GM FK++F G E Y TT Sbjct: 7 SDIRETFLRFFETKGHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGLEHRDYARATTS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK--EFDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+L+T + + Sbjct: 67 QKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKADAIAYAWELVTSLDWLGIPK 126 Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 +LY+T++ DEEA++LW+ G+ A++I DNFW M +TGPCGPCSEIF Sbjct: 127 EKLYVTIFKGENGVPRDEEAYELWRG-QGVPAERIFEFGAKDNFWQMGDTGPCGPCSEIF 185 Query: 177 FDQG---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 +D G PG ++ RY+EIWNLVFMQF++ E +LPK SIDTG GLER+ Sbjct: 186 YDMGMDAAETPGVDKPFGQDDARYVEIWNLVFMQFDRSANGELALLPKPSIDTGAGLERL 245 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------------------------- 264 A+VLQ K +N++ DLF LIQ + ++TG++ Sbjct: 246 ASVLQGKVSNFETDLFTPLIQKAAELTGVRVSQSASQQVSEPAKGSQGEGDVSGNDLSRA 305 Query: 265 ------------EGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309 EG + + R+I DH R+++FLI+DG+LPANEGRGYVLR+I+RR + Sbjct: 306 AHGAKQEGVLAPEGKELTGNASLRIIADHARAATFLISDGVLPANEGRGYVLRKILRRGI 365 Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369 + RLLG +P M ++ A+ EM AYPEL ++ + + + +E+ +F + L+ G L Sbjct: 366 RHGRLLGQEQPFMGQMVYAVRDEMQVAYPELKESAERVAKVVEAEERQFARVLEVGSAQL 425 Query: 370 DGVL----SHLGKD-----------------------------------------EILNG 384 D ++ + G D +L+G Sbjct: 426 DQLIRSEAAGNGSDSGDRWGSGAGTGDGAGFGDGSGFGGGSGSGAGFGDGSGSERRVLHG 485 Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI 444 AF LY+T+GLPLD M D G+ D+ F +A E+++RARA G + + Sbjct: 486 REAFHLYETYGLPLDFMMDAARDAGI-DFDLTGFEEARAEEQARARASWKGGAKQSASPV 544 Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504 + L + T F GY LR E +VL AIV+ G+ V+ Sbjct: 545 YRELPK----TIFEGYGKLR-----VEGAEVL-----------------AIVKDGQGVKA 578 Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD---GIRLQITDVQKKAEGIFVHHAIVE 561 A G VEVV + T FYA++GGQ+GD G D + +++ K +G+F H A++ Sbjct: 579 ANPGDAVEVVLNATSFYADSGGQMGDHGWLYSDDHNSVVAEVSGCTKPVQGVFAHKAVLR 638 Query: 562 RGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 + + L ++ V+ D+ R NH+ THLLH AL +LG+HV Q GS + P LRFD Sbjct: 639 QTLALGDKVDTVVDADF--RAATRRNHTGTHLLHAALREVLGTHVKQAGSLVEPGRLRFD 696 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA---IASG---AAALLGTKYND 674 +H I ELK IED +N + N TR+ ED +A A AL G KY + Sbjct: 697 FSHFTQIADEELKDIEDLINRQVLVN----TRVETIEDVPIDVAVNEYHAMALFGEKYGE 752 Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA--- 731 RVRVV + G S+ LCGGTH +TGEI ++ ++SE S+ +G+RR+EA+TG A Sbjct: 753 RVRVVKI-----GDFSTELCGGTHTGATGEIGVVKLMSEGSVSSGVRRVEAVTGLGALDE 807 Query: 732 --RSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786 R + + Q LA ++S + R+ EE +KL +L + K + Sbjct: 808 FRRGYQVAQ--LAAQLAPSAEMSPAEALQHRLAAQDEELKKLKRELDQVRMKSAASAVSG 865 Query: 787 SCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 + ++ A+VN ++ + ++D ++++++D L+ ++ SG+++L +E K ++++ VT Sbjct: 866 AANQAAEVNGVKVLAQRVDQLDRGQMRTLVDNLRNQLGSGVVVLGSAQEEGKVALIVGVT 925 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 +DL + A + AK + GG GGGRP MA++GG + ++ D A+AGV +K Sbjct: 926 KDLTGKVQAGKVVAQVAKQV-GGSGGGRPDMAEAGGKDASQLDAALAGVPEVVK 978 >gi|313637763|gb|EFS03118.1| alanyl-tRNA synthetase [Listeria seeligeri FSL S4-171] Length = 879 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 363/923 (39%), Positives = 532/923 (57%), Gaps = 72/923 (7%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA +W++ GL+ + I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLTDEHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDENDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ++G+KY E N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + K ++++ G FKLYDT G P+++ + Sbjct: 348 AFIQKVIRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---STFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ I+Q +V+E +G +++F +TPFY Sbjct: 464 T----------------------TEHVSEIL-YIIQNDALVDEVAAGXXAQLIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H +V+ G+L T ++ L++D RR Sbjct: 501 AESGGQVADKGTIQSETGLAYVEDVQKAPNKQNIHRVVVKEGVLTTGDTVKLSVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETVKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQIAVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK S ++E Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKAAYHFVTEQENTLKHAANLLKTSTKETPQKIE 735 Query: 762 EIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + + R+++ + +L D+ S +I VN ++ ++ D +L+ +D Sbjct: 736 LLQADLREVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNW 795 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 + K GI++L + E K +++ V+ED + ++A L + A GG GGGRP MA Sbjct: 796 KDKKIGGILVLGAVQGE-KVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMA 853 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q+GG N + A+ V++++K+ Sbjct: 854 QAGGKNPAELGSALDYVSTWVKE 876 >gi|312127607|ref|YP_003992481.1| alanyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108] gi|311777626|gb|ADQ07112.1| alanyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 108] Length = 881 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 352/909 (38%), Positives = 534/909 (58%), Gaps = 52/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + +T Sbjct: 4 STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R D+D VG+T RH TFFEMLGNFSFG YFK AI AW+ +T+ L + Sbjct: 64 TCQKCIRTP----DIDRVGKTARHATFFEMLGNFSFGDYFKREAIIWAWEFVTEVLKLPR 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL++T+Y+ED+EAF++W K GL D+I R+ DNFW + TGPCGPCSEI+FD+GE Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEPDRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGEE 178 Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P G + +R++E WNLVF QF++ L +IDTGMGLER+A ++QE Sbjct: 179 KGCGKPTCGIGCDCDRFVEFWNLVFTQFDKDENGVYHKLKNPNIDTGMGLERIAAIMQEV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +DID+ K + +VT +Y + V+ RVI DH+R + F+I DGILP+NEGRG Sbjct: 239 DSLFDIDIVKAIRDKVCEVTSYEYGKDAEKDVSVRVITDHIRGTVFMIGDGILPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + R+LG E + ++ + + YPEL+Q I++ L +E+ RF Sbjct: 299 YVLRRLIRRAARHGRMLGKKEAFLHLIVDTVVESYKNPYPELVQKAEYIKKVLYNEESRF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D GL +L+ + L K++ ILNG++ FK+YDT+G PLD+ ++I +G+ +D Sbjct: 359 NQTIDVGLEILESEIEKLKKNKETILNGEIVFKMYDTYGFPLDLTKEIAAEKGII-VDQE 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ +++Q+ RARA L + + I + E T F+GYD L K++ K+L Sbjct: 418 RFDELMQQQKERARAAQKELENAGWKDINIVIDEDI-ETIFVGYDTL------KQEAKIL 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 I L N ++ K E+ V V+ D+TPFYAE+GGQ+ D G G Sbjct: 471 ----KIFLDNEETAYAK---------EDDVCF----VILDKTPFYAESGGQVADKGILEG 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G+ ++ DV+K G +H V +G + S+V +D + R NH+ATHLLH A Sbjct: 514 EGVLAEVLDVKKGPRGTILHKVKVLKGEISVLSSVVAKVDEELRLATMKNHTATHLLHSA 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG H Q+GS ++PD LRFD H +P++ ++ IE VN++I Q +PV + + Sbjct: 574 LRKILGQHAQQSGSQVSPDRLRFDFAHYEPLSEEQIIEIEKMVNNVIQQAIPVEKIVTDL 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A+ GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS+ Sbjct: 634 DSALRMGATALFDEKYSNVVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLIHA 775 AG+RRIEAITG + ++ + LK L S +K S ++ ++E++ + + L+ Sbjct: 689 AAGVRRIEAITGNKVYEFILNTQQTLKQLRSKVKASTDSEIISKIEQLENKIKNLENEVE 748 Query: 776 KRKLQLNVEDLSC--HKIADVNFMSHIISEVDSKEL---KSVMDALQKKIQSGIIMLVGI 830 K KL + +LS K D I++ + ++ K + D ++++ I++ + I Sbjct: 749 KYKLLVVENELSSLYSKAVDYGEFKLIVNRKKTDDMDYVKLLTDKIKERDSKAIVLNI-I 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888 + K ++L+ +++ + + VD ++ +V GG GGGRP AQ GG + K D A Sbjct: 808 QQGSKVTILMSCSKEAVKK--GVDCGKVVKEVCSVLGGKGGGRPDFAQGGGNDVLKIDMA 865 Query: 889 IAGVASFLK 897 + + LK Sbjct: 866 LQTAENILK 874 >gi|229918435|ref|YP_002887081.1| alanyl-tRNA synthetase [Exiguobacterium sp. AT1b] gi|229469864|gb|ACQ71636.1| alanyl-tRNA synthetase [Exiguobacterium sp. AT1b] Length = 880 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 367/920 (39%), Positives = 537/920 (58%), Gaps = 79/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF+ GH + PS+SL+P DPTL++ NSG+ K F G+ P + Sbjct: 10 AQIRQMYLDFFKSKGHSVEPSASLVPVEDPTLLWINSGVATLKKYFDGRVIPANPRIVNA 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YF+E AI W+LLT + + LD Sbjct: 70 QKSIRT----NDIENVGKTARHHTFFEMLGNFSVGEYFREEAITWGWELLTSDEWYGLDP 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 RL +T++ +DEE+ ++W + G+ AD+II + DNFW + E GP GP +EIFFD+G Sbjct: 126 DRLSVTIHPDDEESKQIWMNL-GMPADRIIPL--EDNFWEIGE-GPSGPNTEIFFDRGPA 181 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+EIWN+VF Q+ LP+ +IDTGMGLER Sbjct: 182 FGDDPTDPELYPGG------ENERYLEIWNIVFSQYNHDGHGNYTELPRKNIDTGMGLER 235 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA+VLQ+ N+D DLF +I+ +E+++G Y + + V +VI DH+R+ SF I DG Sbjct: 236 MASVLQDVPTNFDTDLFMPIIRETEKISGDVYRQDSSKDVAFKVIADHIRTVSFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA++LG P M L+ + M YP++ + K I++ Sbjct: 296 LPSNEGRGYVLRRLLRRAVRYAKMLGIERPFMYELVDVVGDIMVDFYPQVNEKKDFIKKV 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L+ V I++G AF+LYDT+G PL++ + Sbjct: 356 IKNEEERFHETLNDGLAILNEVAKAQKAAGSNIISGQDAFRLYDTYGFPLELTIEYAEDH 415 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + +D F +A+ EQR RAR S+ + SG I + F+GY+ L Sbjct: 416 QMT-VDEDGFKEAMNEQRERARQARADVESMQIQSGVLADITMP-------STFLGYNNL 467 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 ++ + +++ GE+ + +G++ +V+ DQTPFYAE Sbjct: 468 E-----------------------TNAKIISLIHNGELADVVAAGEEAQVILDQTPFYAE 504 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GD G +G+ L++ DV K G +H VE G+ + E+++ ++D +R+ + Sbjct: 505 SGGQIGDKGQIVGEDFLLRVKDVSKAPNGQNLHTVTVESGVAKAEVAVTASVDQASRQAI 564 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHLLH AL LG HV+Q GS +TPD LRFD +H +TS EL+SIE VN+ I Sbjct: 565 VKNHTATHLLHRALKDTLGEHVNQAGSLVTPDRLRFDFSHFGQVTSEELQSIERQVNEKI 624 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 ++ V MN DA A GA AL G KY D VRVVS G +S LCGG HVS+T Sbjct: 625 WASIGVDIEEMNIADAKAKGAMALFGEKYGDVVRVVS-----AGDYSVELCGGIHVSNTA 679 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI L I+SES I AG RRIEA+TG A + Q E L++ A LK V RV+ + Sbjct: 680 EIGLFKILSESGIGAGTRRIEAVTGAGAYEVMNQQIETLEAAAKLLKTKPLEVPARVQAL 739 Query: 764 WEEYRKLQLIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E ++++ K +L N+E S I V ++ + D L+S++D L+ Sbjct: 740 QAEIKEVERASESLKAKLANIEASSLTDAIETIGGVQLIAKRVDGQDMDALRSMVDDLKG 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K+ S +I+L G + +K +++ VT+DL DR F+A L + A GGGGGGRP MAQ+ Sbjct: 800 KLGSAVIIL-GSANGEKVNLVAGVTKDLNDRGFHAGKLIKEVATRC-GGGGGGRPDMAQA 857 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG + K D+A+ + +++ Sbjct: 858 GGRDATKLDEALKFASHYVE 877 >gi|221195805|ref|ZP_03568858.1| alanyl-tRNA synthetase [Atopobium rimae ATCC 49626] gi|221184279|gb|EEE16673.1| alanyl-tRNA synthetase [Atopobium rimae ATCC 49626] Length = 882 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 371/914 (40%), Positives = 533/914 (58%), Gaps = 66/914 (7%) Query: 1 MSN-----VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK 55 MSN + IR FL FF+ G ++ PSSSL+P +DP+L+ N+GM FK + G + Sbjct: 1 MSNYKTMTTAEIRKNFLAFFESKGCKVYPSSSLVP-SDPSLLLANAGMNQFKEYYQGIKT 59 Query: 56 PVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 T+ QKC+R ND+DN+G NRH +FFEMLGNFSFGGY K A A + ++ Sbjct: 60 MKEIGATSCQKCLRT----NDIDNIG-DNRHLSFFEMLGNFSFGGYTKRDACTWAMEFIS 114 Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + L RLY TV+ +D+EA ++W + G++ D I R+ DNFW+ TGPCGPCS Sbjct: 115 SPEHLGLPLDRLYFTVFTDDDEAAEIWHSL-GVAEDHISRLGEEDNFWAAGPTGPCGPCS 173 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 EI+FDQG G PG ++G+RY+E WNLVF Q+++Q LP +IDTGMGLER+ Sbjct: 174 EIYFDQGPEFSGEKPG--DDGDRYLEFWNLVFTQYDRQEDGSMPELPHRNIDTGMGLERI 231 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNH--RVIVDHLRSSSFLIADGI 290 A ++Q +NY+ D+ LI+ E+++G +Y+ GN V+ R++ DH R+ SF+I DGI Sbjct: 232 AAIMQHAGSNYEGDIMTSLIELGEKLSGKRYQAGNEEVDRSLRILADHSRAVSFMIGDGI 291 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP NEGR Y+LRR++R A+ + RL+G + M + +G AY EL++ ++LIE Sbjct: 292 LPGNEGRSYILRRLLRHAVYHGRLVGIQKTFMAEYANEVVRLLGDAYSELVEKRVLIEGI 351 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L +E+ERFG TL+ G L+ L L DE L+GDVAF L+DT+G P+D+ ++I AR Sbjct: 352 LTAEEERFGTTLEAGESKLEDELKKLTGDECLSGDVAFLLHDTYGFPIDLTREI-AARAG 410 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL--LRGSKF 468 ++ F+ A+ EQ+ RARA + G + +W +L ++ T F GY+ L G + Sbjct: 411 HAVNEAQFDAAMAEQKQRARASANRDAWGKAQSVWVALSDRLDETVFDGYNHNELEGCR- 469 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V A+V+ G+ V+ A G +VEVV D+TPFYAE GGQ+ Sbjct: 470 -----------------------VVALVKGGQEVDCAAVGDEVEVVLDRTPFYAEMGGQV 506 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG D + +Q++D + K + H VE G L T L+ ID R + NH+ Sbjct: 507 GDTGTLSADNLFVQVSDTKHKEGNLIAHVGQVEEGELHTGDVLIAVIDTGRRELIRRNHT 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL ILGSHV+Q GS + PD LRFD TH + +TS EL IE +N I P Sbjct: 567 ATHLLDAALKLILGSHVNQAGSLVAPDRLRFDFTHFEALTSDELARIEGMINAEIFAAKP 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 +VT+IMN ++A A+GA AL G KY D VRVVSV ED S LCGGTH +T E+ L Sbjct: 627 IVTQIMNIDEAKAAGAVALFGEKYGDVVRVVSVGEEDHPF-SRELCGGTHAKNTAELGLF 685 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSESS+ A RRIEA+T A S++ + +L +A LKV V RVE++ + R Sbjct: 686 KIVSESSVGANSRRIEAVTSMGAISYVDERLVQLDMVAHGLKVRPEAVAARVEQLQSDLR 745 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-------IISEVDS---KELKSVMDALQK 818 + A +K + ++IA+ +H +I+ +D K+L+SV D ++ Sbjct: 746 E-----AHKKAEAATVGAGSNRIAEALHNAHELDGYRCVITRLDDLSGKDLRSVWDGIRD 800 Query: 819 KIQSGIIMLV--GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 + V ++ +KK ++L T+ + F+A L + A ++ GG GGGRP+MA Sbjct: 801 ASDGHPVACVIASVTPDKKVALLAGATDTAVAAGFSAGTLIKDIAGLV-GGRGGGRPNMA 859 Query: 876 QSGGPNGNKADQAI 889 Q+GG + + D A+ Sbjct: 860 QAGGVDISGIDVAL 873 >gi|46447153|ref|YP_008518.1| alanyl-tRNA synthetase [Candidatus Protochlamydia amoebophila UWE25] gi|81626678|sp|Q6MB06|SYA_PARUW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|46400794|emb|CAF24243.1| probable alanyl-tRNA synthetase [Candidatus Protochlamydia amoebophila UWE25] Length = 878 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 355/905 (39%), Positives = 518/905 (57%), Gaps = 48/905 (5%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 SIR FLE+F+K+ H+++ SSS++P +DPTL+F N+GM FK++F G+ Y T Q Sbjct: 5 SIRRQFLEYFKKHQHQIVSSSSVLPHDDPTLLFNNAGMNQFKDVFLGKSYRDYNRAATSQ 64 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R GGKHNDL+NVG T+RH TFFEMLGNFSFG YFK +AI+ AW++ T+ F + R+ Sbjct: 65 KCIRVGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKTQAIRFAWEVSTQVFGFEPERI 124 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 + TV+ ED+E F+LW + + A++I R DNFW+M +TGPCGPCSE+ +D+G Sbjct: 125 WPTVFREDDETFELWTQY--VPAERITRFGEKDNFWAMGDTGPCGPCSELLYDRGSDYGN 182 Query: 186 GL-PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P GER++E WNLVFMQF +Q + LPK SIDTG GLER+ + + + Sbjct: 183 ATKPSEDSSGERFLEFWNLVFMQFNRQTSGVQNPLPKPSIDTGAGLERVINLKMGVNSVF 242 Query: 245 DIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 + D+ + +I E ++G+ Y + RVI DHLR SF IADG+ P+N RGYVLR Sbjct: 243 ETDILRSIIAQIELLSGIAYHPQDQQSAAFRVIADHLRCLSFAIADGVQPSNVDRGYVLR 302 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 +++RRA+ Y R L +P + +LP L + MGS YPEL++ + I E L E+E F +TL Sbjct: 303 KVLRRAVRYGRTLKLEKPFLAEVLPQLVSTMGSDYPELVKGQDRIAEILTIEEEAFIRTL 362 Query: 363 DRGLVLLDGVLSH-LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 RG +L+ V+ +I++GD AFKL DT+GLP++ + I GL +D + Q Sbjct: 363 KRGGNILNQVIEKSRASHQIISGDDAFKLKDTYGLPIEEILLIAKDSGLK-VDEPRYQQL 421 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 EE + R+R + E I+ + G T+F G+ Sbjct: 422 EEEAKQRSRHVHKTVHQIAGENIFADFVKVRGETKFAGF--------------------- 460 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 N + S V + GE VEE SGQ+ V +TPFYAE GGQ+GDTG + Sbjct: 461 --TQNSLKSSVVGLFVNGEFVEEMQSGQEGLVFLSETPFYAEMGGQVGDTGTLENSNSKF 518 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + D +G+ H + G L+ + +ID + R++++ NH+ATHLLH AL IL Sbjct: 519 SVEDCVVPYKGLIAHKGKLNTGSLKNGEMITASIDKKRRQKIANNHTATHLLHWALHQIL 578 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-I 660 G H+ Q GS + P LRFD +H K ++ E + IED VN I +NLPV + E+A Sbjct: 579 GEHIKQAGSVVDPQRLRFDFSHHKALSLEESRQIEDLVNQKIRENLPVKCYEIKYEEAQK 638 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 G KY VRV+ ++Y S LCGGTH S+ G I L I+ ES I AGI Sbjct: 639 KEDIKQFFGEKYGSTVRVIDIDY------SKELCGGTHTSALGNIGLFRILKESGIAAGI 692 Query: 721 RRIEAITGQRARSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777 RRIEA+TG A L QDE L++LA LKV V+ ++E++ EE ++ +L K+ Sbjct: 693 RRIEAVTGAEAEL-LQRQDEDLLRTLAQQLKVPIHQVLEKLEKLQEENKQFIAELKEIKK 751 Query: 778 KLQLNVE-DLSCHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K +LNV + KI + S +I E + +EL+ +D + +I S +I+L G + Sbjct: 752 K-ELNVLINGFIKKIEQLGNTSVLILETALSVEELRLCVDLISDQIPSAVIIL-GAAFPD 809 Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K +L+ +++DL+ + NA ++ ++ ++ G GGG+ H AQ GG +A + Sbjct: 810 KCQILVKISDDLVKQGINANEIIKILMPIV-EGSGGGKQHTAQGGGKKPAMLGEAFKQIR 868 Query: 894 SFLKK 898 +LK+ Sbjct: 869 IYLKE 873 >gi|222527366|ref|YP_002571837.1| alanyl-tRNA synthetase [Chloroflexus sp. Y-400-fl] gi|222451245|gb|ACM55511.1| alanyl-tRNA synthetase [Chloroflexus sp. Y-400-fl] Length = 894 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 367/918 (39%), Positives = 525/918 (57%), Gaps = 57/918 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TFL FF ++GH +PSSSL+ +DPTL+F NSGMV FK++F G+E+ Y Sbjct: 5 TAAQIRETFLSFFIRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYSRAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI LAW LLT+EF L Sbjct: 65 TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEEFKLPV 124 Query: 123 RRLYITVY---DE---DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL+ TV+ DE D+EA LW G +++R DNFW M +TGPCGPCSEI Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIA-QGADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183 Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G+ + G + + Y+EIWN VFMQ+++ Q LP+ S+DTGMGLERMA Sbjct: 184 MYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRATMQP---LPRPSVDTGMGLERMAM 240 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293 V+Q + Y+ DLF +I + G E + +R I DH R+ +FLIADG+LP Sbjct: 241 VMQGVHSTYETDLFVAIINQIIKTRGSDEEHYHAHRSAYRAIADHARAIAFLIADGVLPG 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N GR YVLRRI+RRA R +G+ P + ++ ++ +MG AYPEL++ + LI Sbjct: 301 NLGRSYVLRRILRRAAYQGRTIGFERPFLADVITSVIEQMGEAYPELVKRRELILSAADQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ +F +TL GL L GV+ + ++++ G+ AF L DT+G PLD+ Q I +GL Sbjct: 361 EERQFLRTLSGGLTRLQGVIEQVRARGEQVIPGNDAFVLKDTYGFPLDLTQKIAAEQGLT 420 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + A+ EQR+R+RA + G + +W L A+ F GY+ L Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAASKRGGEAD-LWADL--DLPASHFTGYERL-------S 469 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 DR + V ++ G+ + A +G+ V++V D TPFYAE+GGQ+GDT Sbjct: 470 DR----------------ATVIGMLGDGDALTSADTGRSVQIVLDTTPFYAESGGQIGDT 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +G +QI D ++ G+ VH+ V G + + T+D R + NH+ATH Sbjct: 514 GLLVGPEGSVQIEDTRRPLPGLIVHYGRVVNGRISVGDQVQATVDVVRRADIQRNHTATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +L AL +LG H +Q GS + PD LRFD TH+K + EL+ +E +N + + V Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKAVDPEELREVEQRLNKWVRADTTVRW 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-------EDGGVHSSALCGGTHVSSTGE 704 I +DA+A GA AL G KY D VR+V++E E S LCGGTHV+ TGE Sbjct: 634 EITGYQDAMARGAIALFGEKYGDTVRLVTIERGQTLAEGEFASRDSLELCGGTHVNHTGE 693 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + IVSE SI +GIRRIEA+TG+ A + Q + L+ LA+ + ++ R++ + Sbjct: 694 IGFVRIVSEGSIGSGIRRIEALTGRGAEGWVEQQAQTLRELAARINAQPAQLLERIDALL 753 Query: 765 EEY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKK 819 E+ RK +L + KL DL ++ V + + +EV++ L+ + + L+ K Sbjct: 754 AEHRQRKQELEALRSKLAREQLDLLLGRVQHVAGVPLLAAEVEADSVDRLREMGEYLRDK 813 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + +I+L G K +L +VT DL+ R NAV L + A ++ GGGGGGRP +AQ+G Sbjct: 814 LGNAVIVL-GAQINGKPQLLTIVTPDLVRRGLNAVQLVKPLAALV-GGGGGGRPEIAQAG 871 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K AI L Sbjct: 872 GRHPDKLAAAIGAAVEVL 889 >gi|299144219|ref|ZP_07037299.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518704|gb|EFI42443.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 874 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 351/910 (38%), Positives = 549/910 (60%), Gaps = 64/910 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+ +L FF+ H +LPS SLIP ND +L+ +GM P K FTG+ P + VTT QK Sbjct: 9 IRSLYLNFFESKQHLMLPSFSLIPKNDKSLLLIGAGMAPMKKYFTGELTPPSRRVTTCQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR G D++NVG+T+RH TFFEMLGNFSFG YFK AI AW+ LT++ ++ + L+ Sbjct: 69 CVRTG----DIENVGKTDRHATFFEMLGNFSFGDYFKREAITWAWEFLTEQIEISKDDLW 124 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TVY ED+EAF++W + + ++I+++ +DNFW + E GP GPCSEI+ D+GE G Sbjct: 125 VTVYHEDDEAFRIWNEEIKVPKERIVKLGKDDNFWEL-EVGPSGPCSEIYVDRGEAYGCG 183 Query: 187 ----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 PG + +R+IE+WNLVF QF++ L +IDTGMGLER+ATV+Q N Sbjct: 184 DKNCKPGC--DCDRFIEVWNLVFTQFDKDESGVYHPLKNPNIDTGMGLERLATVVQHTNN 241 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300 ++ID + +I+ E+++G KYE + ++ RVI DH+R+ +F+I+D I P+NEGRGYV Sbjct: 242 IFEIDAIQDIIREIEKISGYKYETDKKLDESVRVITDHIRAMTFMISDTIRPSNEGRGYV 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGS-AYPELIQAKLLIEETLRSEDERFG 359 LRR +RRA + R+LG + + L + G+ YPELI+ + I+ +++E+E+F Sbjct: 302 LRRFIRRAARHGRILGIKKSFLSELSDLIINSWGADYYPELIENRDNIKSVIKAEEEKFL 361 Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA----GI 413 +T+++G+ +L+ + L K +IL+G+ AFKLYDT+G P+D+ +IL + G Sbjct: 362 ETIEQGMSMLESHILDLKEKKLDILDGEYAFKLYDTYGFPVDLTAEILDENSIKLDRDGF 421 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D Q + +R + ++G GS EKI+ LK +F+GY+ Sbjct: 422 DKNMDAQRKRARAARDDSDNIGWGSHDNEKIYEGLK-----NEFVGYE------------ 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K C+ I+L V+ E+V++ G++ ++ D+TPFYAE+GGQ GDTG Sbjct: 465 KDECKANIIEL-----------VKLNELVDKLTKGERGIIILDKTPFYAESGGQAGDTGI 513 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSATHL 592 D ++++ D +K +G+ +H VE GI+ ++E+S ID R + NHS THL Sbjct: 514 IESDKFKIKVIDTKKNVKGLHLHMVEVEEGIVEKSEVS--AKIDVIRRFNIRRNHSVTHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS + + +RFD TH + I +L+ IED VN I + LPV T Sbjct: 572 LHKALKEVLGNHVNQAGSEVLDNRMRFDFTHFEAIDKEDLQKIEDRVNQKIFEALPVKTT 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 I N EDA GA L KY+ VRVV++ G +S LCGGTHVS+T EI + I+S Sbjct: 632 ITNPEDAYKLGAVGLFEEKYSSVVRVVTM-----GDYSMELCGGTHVSNTSEISMFKIIS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ I +G+RRIE+ITG S+L + AS LK ++ +++ +++ + E + + Sbjct: 687 ENGISSGVRRIESITGPAVYSYLNNLENLRDESASTLKSNKSDIIQKIKLLTENVKAYEK 746 Query: 773 IHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + KL+ +++S KI +N++++ +EVD L+++ D +++K+ S +++L Sbjct: 747 QIEELKLKTAKDEVSEIIKNVKKINSINYVTYRFNEVDVNTLRNLADEVREKVGS-VVVL 805 Query: 828 VGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K + + V++DL+ + +A ++ + AKV GGGGGGRP MA +GG + +K D Sbjct: 806 FATEIDDKVNFVCAVSQDLVKQKISAGNIVKEVAKVT-GGGGGGRPDMATAGGKDASKID 864 Query: 887 QAIAGVASFL 896 A+ + + L Sbjct: 865 LALEEIKNIL 874 >gi|326204671|ref|ZP_08194527.1| alanyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782] gi|325985238|gb|EGD46078.1| alanyl-tRNA synthetase [Clostridium papyrosolvens DSM 2782] Length = 879 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 344/907 (37%), Positives = 547/907 (60%), Gaps = 50/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ GH L S+ L+P NDP+L+ NSGM P K FTGQE+P + VTT Sbjct: 6 LNELRERYLKFFESKGHLRLASAPLVPKNDPSLLLINSGMAPLKPFFTGQEEPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH T+FEMLGNFSFG YFK AI AW+ +T++ + Sbjct: 66 CQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKNEAIPWAWEFVTEDLKMPVE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++T+Y++D+EAF +W K+ GL A++I+R+ DNFW TGPCGPCSEI+FD+G Sbjct: 122 KLWVTIYEDDDEAFDIWHKVVGLPAERIVRMGKKDNFWEHG-TGPCGPCSEIYFDRGPEK 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +RY+E WN VF QF + + L +IDTGMGLER+A + Q+ Sbjct: 181 GCGSPDCKVGCECDRYVEFWNNVFTQFNRDEQGNYTRLTHPNIDTGMGLERLACISQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D +++ + G++Y+ + V+ RVI DH+RS++ ++ DG+LP+NEGRGY Sbjct: 241 NLFEVDTVWNILDYICKTAGVEYKKSEKTDVSIRVITDHIRSTTMMVCDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG +P + + + E AYPEL + I++ ++ E+ERF Sbjct: 301 VLRRLLRRAARHGRLLGINKPFLYDVAMVVINESKEAYPELAEKAGYIKKVIKIEEERFE 360 Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 T+D+G+V+L+ + + K E++ G++ FKL+DT+G PLD+ ++I GL GID Sbjct: 361 ATVDQGIVILNDFIDEIKAKKQEVIPGEMVFKLHDTYGFPLDLTREIAEENGL-GIDEDG 419 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + ++ QR +AR AH+ S ++ ++ L +K T F+GY+ ++ Sbjct: 420 FKKEMDAQRKKARDAHNSKDTSAWSDSVFDKL-DKSQKTAFVGYE------------NIV 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 C+ S++ IV+ GEIV+ A G ++ V+ D+TPFYAE GGQ+GD+G I Sbjct: 467 CE-----------SVILYIVKDGEIVDTAQEGDEITVILDKTPFYAEMGGQVGDSGALIA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++I + K A+G F+H VE G++ T ++ +ID + R ++ NH+ THLLH A Sbjct: 516 KNGVIKIENCTKTADGKFLHTGFVETGLVETGSTVTASIDEKRRTAINRNHTVTHLLHKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L T+LG HV Q GS + P+ LRFD +H +T ELK +ED N+ I ++ V + M Sbjct: 576 LRTVLGDHVHQAGSLVEPNKLRFDFSHFSAMTPEELKKVEDMTNEAILNSMEVDVKEMPI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A GA AL G KY + VRVV VE +S LCGGTH+ +T + L+ I+ ES + Sbjct: 636 DEAKKLGAMALFGEKYGNTVRVVKVED-----YSVELCGGTHLKNTAQAGLVKILGESGV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AG+RR+EA+TG+ A + ++ L ++ LK + + + +VE + +E + ++ Sbjct: 691 AAGVRRLEALTGEAAIRYYTERENLLNEVSQALKATPQDSLKKVESLGQELKNAEKEIEQ 750 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGIS 831 + KL + +V + +++ D+ + L++ D L+ K+ SG+I+L G Sbjct: 751 LRNKLVSGESESVLANAVEVKGVKVVMARFDTMDMEGLRNTGDMLKNKLGSGVIVL-GSG 809 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K S ++ T+D++ + ++ ++ + AK GGGGGGRP MAQ+GG + +K D+A+ Sbjct: 810 YGDKVSFVVTATKDVVAKGIHSGNIIKEVAKT-AGGGGGGRPDMAQAGGKDLSKIDEALK 868 Query: 891 GVASFLK 897 S ++ Sbjct: 869 SAVSIVE 875 >gi|288574979|ref|ZP_06393336.1| alanyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570720|gb|EFC92277.1| alanyl-tRNA synthetase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 878 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 355/908 (39%), Positives = 526/908 (57%), Gaps = 55/908 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F++F+ G + S SL+P DPTL+FT +GMVPFK + G +P + T QK Sbjct: 9 IRRLFVDFWVSKGAKHYDSFSLVP-EDPTLLFTIAGMVPFKKYYLGIAEPDVDSAVTSQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR ND+DNVGRT RHHTFFEMLGNFS+GGYFK+ +I W+ LT+ LD R+Y Sbjct: 68 CVRT----NDIDNVGRTARHHTFFEMLGNFSWGGYFKKESITWGWEFLTEVIGLDPDRMY 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---ECI 183 T+Y +DEEAF +W K GL +I+R ++NFW M GPCGP SEI +DQG C Sbjct: 124 ATIYKDDEEAFDVWNKDVGLPDSRILRFGEDENFWFMGPQGPCGPDSEILYDQGPAFSCG 183 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P PG E +RY+EIWN VF Q+++Q LP+ +IDTGMGLER+ +++Q +N+ Sbjct: 184 PDCKPGC--ECDRYLEIWNHVFTQYDRQEDGSLLPLPRKNIDTGMGLERLTSLVQGVSND 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 ++ DLF+ ++ + G+ Y G+ + + +VI DH+R+ SF+IADGILP+N+G+GYV Sbjct: 242 FETDLFRPIMDHVCDMAGIGY-GDGLQGDMAAKVISDHIRAVSFMIADGILPSNDGQGYV 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA Y RL+G + + L+P + M Y EL+ +L IE+ + E++RFG+ Sbjct: 301 LRRLLRRAARYGRLIGLKKAFLTDLIPNVMDIMADPYRELLDNRLTIEQVVAVEEKRFGR 360 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL++G LL +S + G IL GDVAF+LYDT+G PL++ ++I +GL+ +D F Sbjct: 361 TLEQGSDLLHQEISSVFAGDGSILPGDVAFELYDTYGYPLELTREICEEKGLS-VDEDGF 419 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + +E QR RAR+ S S T ++ L ++G T F+GYD L ++ D VL Sbjct: 420 RREMEVQRERARSSSKQANSVMTGDLYAELLSEHGPTPFLGYDSLE----LEADLTVL-- 473 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 +++G++V+ A +G VE + +TPFYAE GGQ+GD G GDG Sbjct: 474 -----------------MKEGKVVDSASTGDSVEFLLSRTPFYAERGGQVGDQGFVKGDG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +++ D A + VH IV G +++ + +D R ++ NH+ATHLLH +L Sbjct: 517 FIVEVEDTIHPAGDLIVHRGIVTSGTVKSGCEVRAMVDKDRREAITKNHTATHLLHESLI 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV QNGS ++ LRFD TH +P++S EL +E VN I N + + Sbjct: 577 RVLGGHVRQNGSLVSDRFLRFDYTHFEPLSSGELDEVELMVNQEIQNNKTIKVDETDLAT 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A GA AL KY D+VRVVS+ SS LCGG HV +TGEI L I+++ SI + Sbjct: 637 AKNLGAKALFEEKYGDKVRVVSISE-----FSSELCGGVHVCATGEIGLFKIINDESIGS 691 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 GIRRI A+TG A + LK L+S L V ++ +++ + EE R+LQ + Sbjct: 692 GIRRITAMTGMNAFRNYQNITGTLKELSSNLGVRPARLIEKIKSMDEENRELQKKLQRYT 751 Query: 779 LQLNVEDLSCHKIAD-----VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 ++ ++DL + V+ I V +L+ V D+++ K + +L+ + Sbjct: 752 IRSAMDDLRESVVKTDIGQGVSLYVASIEGVTPDQLREVGDSIKDKDTGSVTLLMSSDGD 811 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA----DQAI 889 + V +V + + + + + A + GG GGGRP MAQ+GGP + D+A+ Sbjct: 812 RTQMVCMVGGDAVEKGLHGGKIVKEVAALF-GGKGGGRPTMAQAGGPKIDDMKDILDKAV 870 Query: 890 AGVASFLK 897 A V ++K Sbjct: 871 AIVKGYVK 878 >gi|163849369|ref|YP_001637413.1| alanyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl] gi|205830020|sp|A9WCR2|SYA_CHLAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|163670658|gb|ABY37024.1| alanyl-tRNA synthetase [Chloroflexus aurantiacus J-10-fl] Length = 894 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 367/918 (39%), Positives = 525/918 (57%), Gaps = 57/918 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR TFL FF ++GH +PSSSL+ +DPTL+F NSGMV FK++F G+E+ Y Sbjct: 5 TAAQIRETFLSFFIRHGHTHVPSSSLVVADDPTLLFANSGMVQFKDVFLGREQRPYSRAV 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R GKHNDL+ VG + RHHTFFEMLGNFSFG YFK AI LAW LLT+EF L Sbjct: 65 TAQKCLRVSGKHNDLEEVGPSPRHHTFFEMLGNFSFGDYFKAEAIALAWKLLTEEFKLPV 124 Query: 123 RRLYITVY---DE---DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 RL+ TV+ DE D+EA LW G +++R DNFW M +TGPCGPCSEI Sbjct: 125 ERLWFTVFAGDDEVPPDDEAAALWIA-QGADPSRVLRFGRKDNFWVMGDTGPCGPCSEIT 183 Query: 177 FDQGECIPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 G+ + G + + Y+EIWN VFMQ+++ Q LP+ S+DTGMGLERMA Sbjct: 184 MYIGDDLSQMRAEGVNSDDPNYVEIWNNVFMQYDRATMQP---LPRPSVDTGMGLERMAM 240 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293 V+Q + Y+ DLF +I + G E + +R I DH R+ +FLIADG+LP Sbjct: 241 VMQGVHSTYETDLFVAIINQIIKTRGSDEEHYHAHRSAYRAIADHARAIAFLIADGVLPG 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N GR YVLRRI+RRA R +G+ P + ++ ++ +MG AYPEL++ + LI Sbjct: 301 NLGRSYVLRRILRRAAYQGRTIGFERPFLADVITSVIEQMGEAYPELVKRRELILSAADQ 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ +F +TL GL L GV+ + ++++ G+ AF L DT+G PLD+ Q I +GL Sbjct: 361 EERQFLRTLSGGLTRLQGVIEQVRARGEQVIPGNDAFVLKDTYGFPLDLTQKIAAEQGLT 420 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D + A+ EQR+R+RA + G + +W L A+ F GY+ L Sbjct: 421 -VDEAGYEAAMAEQRARSRAAAASKRGGEAD-LWADL--DLPASHFTGYERL-------S 469 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 DR + V ++ G+ + A +G+ V++V D TPFYAE+GGQ+GDT Sbjct: 470 DR----------------ATVIGMLGDGDALTSADTGRSVQIVLDTTPFYAESGGQIGDT 513 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G +G +QI D ++ G+ VH+ V G + + T+D R + NH+ATH Sbjct: 514 GLLVGPEGSVQIEDTRRPLPGLIVHYGRVVNGRISVGDQVQATVDVVRRADIQRNHTATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +L AL +LG H +Q GS + PD LRFD TH+K + EL+ +E +N + + V Sbjct: 574 MLQRALRDVLGEHAAQAGSLVAPDRLRFDFTHTKAVDPEELREVEQRLNKWVRADTTVRW 633 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEY-------EDGGVHSSALCGGTHVSSTGE 704 I +DA+A GA AL G KY D VR+V++E E S LCGGTHV+ TGE Sbjct: 634 EITGYQDAMARGAIALFGEKYGDTVRLVTIERGQTLAEGEFASRDSLELCGGTHVNHTGE 693 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + IVSE SI +GIRRIEA+TG+ A + Q + L+ LA+ + ++ R++ + Sbjct: 694 IGFVRIVSEGSIGSGIRRIEALTGRGAEGWVEQQAQTLRELAARINTQPAQLLERIDALL 753 Query: 765 EEY--RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKK 819 E+ RK +L + KL DL ++ V + + +EV++ L+ + + L+ K Sbjct: 754 AEHRQRKQELEALRSKLAREQLDLLLGRVQHVAGVPLLAAEVEADSVDRLREMGEYLRDK 813 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + +I+L G K +L +VT DL+ R NAV L + A ++ GGGGGGRP +AQ+G Sbjct: 814 LGNAVIVL-GAQINGKPQLLTIVTPDLVRRGLNAVQLVKPLAALV-GGGGGGRPEIAQAG 871 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K AI L Sbjct: 872 GRHPDKLAAAIGAAVEVL 889 >gi|302335910|ref|YP_003801117.1| alanyl-tRNA synthetase [Olsenella uli DSM 7084] gi|301319750|gb|ADK68237.1| alanyl-tRNA synthetase [Olsenella uli DSM 7084] Length = 880 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 353/902 (39%), Positives = 513/902 (56%), Gaps = 54/902 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR +L FF+ G L PSSSL+P DP+L+ TN+GM FK + G + T Sbjct: 9 TTAEIREDYLRFFESKGCRLYPSSSLVP-EDPSLLLTNAGMNQFKEYYQGTKTMREIGAT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QKC+R ND+DN+G +RH +FFEMLGNFSFGGY K AI AW+ +T + L Sbjct: 68 SCQKCLRT----NDIDNIG-DSRHLSFFEMLGNFSFGGYTKADAIAWAWEFITAAEHLGL 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY+TV+++D+EA +LW G++ D I R+ DNFW+ TGPCGPCSEI+FDQG Sbjct: 123 PKDRLYMTVFEDDDEAIELWHA-QGVAYDHISRLGEEDNFWAAGPTGPCGPCSEIYFDQG 181 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G PG ++GERY+E WNLVF Q+++Q LP +IDTGMGLER+A ++Q + Sbjct: 182 PAFEGERPG--DDGERYLEFWNLVFTQYDRQEDGSMPELPHRNIDTGMGLERIAAIMQHE 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 +NY+ D+ + LI EQ+ G++Y + R++ DH R+ +F+I DGILP+NEGRG Sbjct: 240 GSNYEGDVLRTLIGVGEQLAGVRYREGAATDTSLRILADHSRAVTFMIGDGILPSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA+ + RL+G + + M YP+L++ + LI+ + +E+ERF Sbjct: 300 YVLRRLLRRAVYHGRLMGVHGSFLPTYAHEVTRLMADVYPQLVENQALIDGIISAEEERF 359 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 G TLD G L L L E L+G+VAF+L+DT+G P+D+ ++I A G +D+ +F Sbjct: 360 GATLDAGEGNLTAALGRLDAGEALSGEVAFRLHDTYGFPIDLTREIAAAAGHE-VDMAAF 418 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + A+ +QR RAR + G + +W SL ++ G T+F GYD Sbjct: 419 DGAMAKQRERARQAANRDAWGASNNVWVSLSDRLGETEFCGYDE---------------- 462 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 D G V AIV+ G V+ A G+ VEVV D+T FY E GGQ GD+G + + Sbjct: 463 ----DTVEGAR--VLAIVRDGSEVDVACRGEHVEVVLDRTSFYGEMGGQQGDSGKLVCED 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 L ++D + + G H V G LR S+ ID+ R + NH+ATHLL AL Sbjct: 517 ATLAVSDAKHRDGGFVSHVGEVTAGELRVGESVRAVIDHGRRELIRRNHTATHLLDAALK 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HVSQ GS + P LRFD TH + +++ E+ +E VN I PVVT +M E+ Sbjct: 577 RVLGDHVSQAGSLVGPSRLRFDFTHFEAMSAEEMARVEGMVNAEIFAAEPVVTTVMGIEE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A ASGA AL G KY D VRVVS D S LCGGTH +T E+ L IVSE S+ + Sbjct: 637 AKASGAVALFGEKYGDVVRVVSTGASD-EPFSRELCGGTHARNTAELGLFKIVSEGSVGS 695 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 +RR+EA+T A +L + ++ +A+ L+ +V RVE++ K + + K Sbjct: 696 NVRRLEAVTSMGAIEYLDERLAQIDQVAAGLRCRPSDVAARVEQL-----KAEKAETEHK 750 Query: 779 LQLNVEDLSCHKIADV----------NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L+ + S + +AD + + V KEL+S D+++ ++ ++ Sbjct: 751 LRAALTGGSSNAVADAIASAIDRGAYRLVLARLDGVSGKELRSAWDSVRDRLGVDCACVL 810 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + K +L T+ + F+A D+ R S L GG GGG+P MAQ+GG + + D Sbjct: 811 ASESDGKVGLLAAGTDGAVSAGFSAGDIIR-SVAGLVGGRGGGKPAMAQAGGSDPSGIDA 869 Query: 888 AI 889 A+ Sbjct: 870 AL 871 >gi|325661656|ref|ZP_08150280.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472183|gb|EGC75397.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 4_1_37FAA] Length = 879 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 366/910 (40%), Positives = 527/910 (57%), Gaps = 58/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AIQ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIQWSWEFLTEVVGLDAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +DEEAF++W K G+ A++I + DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYVDDEEAFEIWNKEMGIPAERIFKFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V+Q+ Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGNYSELEQKNIDTGMGLERLASVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L + + Y + + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 241 SIFDVDTVKALRDKVCEAANVTYKKDADQDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + K I L E+++F Sbjct: 301 VLRRLIRRAARHGRLLGIEGKFLAKLSETVIEGSKDGYPELDEKKDFIFNVLTQEEDKFD 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + + +++L+G+ AFKLYDT+G PLD+ ++IL +G GID Sbjct: 361 KTIDQGLHILSVMQEEMNQAGEKVLSGENAFKLYDTYGFPLDLTKEILEEKGY-GIDEEG 419 Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F A+E+QR +AR + +G + ++I S+ T+F+GYD L Sbjct: 420 FQAAMEKQRVQAREARKETNYMGADATVYDEIDPSV-----TTEFVGYDTL--------- 465 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + + EI E GQ+ + ++TPFYA GGQ GDTG Sbjct: 466 --------------SCDSKITVLTTESEITEAVADGQRATIFVEKTPFYATMGGQEGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + K G F H V +G+ RT ++ L + + R NHSATHL Sbjct: 512 IIHTADAEFAVEETIKLLGGKFGHIGRVTKGMFRTGDTVTLEVRSKERLNTCKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS +TPD LRFD H +T E++++E VN+ IA+N PVVT Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTKEEIEAVEALVNEEIAKNNPVVTE 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +MN E+A +GA AL G KY + VRVV++ G S LCGGTHVS+TG I IVS Sbjct: 632 VMNVEEAKKTGAMALFGEKYEEDVRVVTM-----GDFSKELCGGTHVSNTGLITTFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES + AG+RRIEA+TG ++ Q++KL A LK + N+ ++ + E + L Sbjct: 687 ESGVAAGVRRIEALTGDGVFAYYKAQEQKLAEAAKLLKATPENLAEKISHLLAETKSLHS 746 Query: 771 QLIHAKRK-LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ K K Q V D+ +I V ++ + +VD L+ + D L++K+ G++++ Sbjct: 747 EIESLKSKAAQEAVGDVMNQVEEICGVKVLAVRVEDVDMGGLRELGDQLKEKLGEGVVVI 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K S++ TE L + +A +L + A ++ GGGGGGRP+MAQ+GG N D Sbjct: 807 ASAAG-GKVSLMATATEGALKKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNPEGID 864 Query: 887 QAIAGVASFL 896 A++ L Sbjct: 865 AALSKAKEVL 874 >gi|228993127|ref|ZP_04153049.1| Alanyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442] gi|228999175|ref|ZP_04158757.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock3-17] gi|229006723|ref|ZP_04164357.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock1-4] gi|228754584|gb|EEM03995.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock1-4] gi|228760792|gb|EEM09756.1| Alanyl-tRNA synthetase [Bacillus mycoides Rock3-17] gi|228766586|gb|EEM15227.1| Alanyl-tRNA synthetase [Bacillus pseudomycoides DSM 12442] Length = 880 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 356/914 (38%), Positives = 537/914 (58%), Gaps = 65/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFEEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY G ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRGGDVEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYAKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ ++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTAISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHTGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L E ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQSLHKIVVEEGTLTKESAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 ILHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVSLLKEAAGKMKTNPKDILTRVDGLFTEVKQLQ 746 Query: 772 LIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L + ++ + D VN ++ ++ D L+++MD L+ K++S + Sbjct: 747 --KENESLAAKLSNIEAGNLTDSVVTVDGVNVLATKVNVADMNNLRTMMDDLKNKLESAV 804 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++L ++ E K ++L VT+DL+++ ++A L + A GGGGGGRP MAQ+GG N Sbjct: 805 VVLAAVN-EDKVNILAGVTKDLINQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPA 862 Query: 884 KADQAIAGVASFLK 897 + D A+A V ++K Sbjct: 863 QVDDALAFVEEYVK 876 >gi|30264458|ref|NP_846835.1| alanyl-tRNA synthetase [Bacillus anthracis str. Ames] gi|47529915|ref|YP_021264.1| alanyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49187280|ref|YP_030532.1| alanyl-tRNA synthetase [Bacillus anthracis str. Sterne] gi|65321756|ref|ZP_00394715.1| COG0013: Alanyl-tRNA synthetase [Bacillus anthracis str. A2012] gi|165872747|ref|ZP_02217375.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0488] gi|167636505|ref|ZP_02394802.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0442] gi|167638586|ref|ZP_02396862.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0193] gi|170689638|ref|ZP_02880820.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0465] gi|170709398|ref|ZP_02899809.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0389] gi|177653242|ref|ZP_02935494.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0174] gi|190566972|ref|ZP_03019888.1| alanyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I] gi|227817167|ref|YP_002817176.1| alanyl-tRNA synthetase [Bacillus anthracis str. CDC 684] gi|229602565|ref|YP_002868676.1| alanine--tRNA ligase [Bacillus anthracis str. A0248] gi|254684144|ref|ZP_05148004.1| alanyl-tRNA synthetase [Bacillus anthracis str. CNEVA-9066] gi|254736491|ref|ZP_05194197.1| alanyl-tRNA synthetase [Bacillus anthracis str. Western North America USA6153] gi|254741529|ref|ZP_05199216.1| alanyl-tRNA synthetase [Bacillus anthracis str. Kruger B] gi|254751372|ref|ZP_05203409.1| alanyl-tRNA synthetase [Bacillus anthracis str. Vollum] gi|254757704|ref|ZP_05209731.1| alanyl-tRNA synthetase [Bacillus anthracis str. Australia 94] gi|33301676|sp|Q81LK0|SYA_BACAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|30259116|gb|AAP28321.1| alanine--tRNA ligase [Bacillus anthracis str. Ames] gi|47505063|gb|AAT33739.1| alanyl-tRNA synthetase [Bacillus anthracis str. 'Ames Ancestor'] gi|49181207|gb|AAT56583.1| alanyl-tRNA synthetase [Bacillus anthracis str. Sterne] gi|164711523|gb|EDR17072.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0488] gi|167513434|gb|EDR88804.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0193] gi|167528098|gb|EDR90895.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0442] gi|170125697|gb|EDS94613.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0389] gi|170666408|gb|EDT17189.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0465] gi|172081524|gb|EDT66596.1| alanyl-tRNA synthetase [Bacillus anthracis str. A0174] gi|190561963|gb|EDV15932.1| alanyl-tRNA synthetase [Bacillus anthracis Tsiankovskii-I] gi|227003572|gb|ACP13315.1| alanine--tRNA ligase [Bacillus anthracis str. CDC 684] gi|229266973|gb|ACQ48610.1| alanine--tRNA ligase [Bacillus anthracis str. A0248] Length = 880 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 357/913 (39%), Positives = 540/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILSEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 GC + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GCLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AGIRRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGIRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|121535965|ref|ZP_01667759.1| alanyl-tRNA synthetase [Thermosinus carboxydivorans Nor1] gi|121305457|gb|EAX46405.1| alanyl-tRNA synthetase [Thermosinus carboxydivorans Nor1] Length = 869 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 365/900 (40%), Positives = 528/900 (58%), Gaps = 61/900 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF H +LPS+SLIP NDPTL+ +GM PFK FTG+ KP + + T Sbjct: 4 NELRKKFLQFFASKDHLVLPSASLIPENDPTLLLIGAGMAPFKPFFTGKMKPPHPRIATC 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR G D++NVGRT RHHTFFEMLGNFSFG YFK AI +W+ +T+ +L + + Sbjct: 64 QKCVRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKREAITWSWEFITEHLNLPKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+IT++ ED+EAF++W K G+ D+I+R+ DNFW + GPCGPCSEI D GE Sbjct: 120 LWITIHTEDDEAFEIWHKEVGVPVDRIVRL--EDNFWEIG-PGPCGPCSEIHIDLGEERG 176 Query: 185 GGLP----GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P G S +RY+EIWNLVF Q+++ + L K +IDTG GLER+A+VLQ K Sbjct: 177 CGKPDCRVGCS--CDRYLEIWNLVFTQYDRDEEGNYTPLAKKNIDTGAGLERIASVLQNK 234 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +N++ DL +I+ + +V G+ Y V+ +VI DH RS + +IADG+LP+NEGRG Sbjct: 235 RSNFETDLLFPIIEHTAKVAGVTYGESAKTDVSLKVIADHGRSLTIMIADGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG +P + ++ + YPE+ K I++ ++ E+ERF Sbjct: 295 YVLRRILRRAVRHGRLLGIDKPFLADIVDVVANIFAEPYPEINDKKAYIKKVVQLEEERF 354 Query: 359 GKTLDRGLVLLDG---VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TL +G+ LL+ VL GK +L+G FKLYDT G P ++ Q+IL + +D Sbjct: 355 NATLAQGMELLNSHIRVLKESGK-TVLDGATGFKLYDTFGFPWELTQEILAEHDME-LDR 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSKFMKEDRK 474 F+QA++EQR RARA E++ + + G TQ + YD Sbjct: 413 AGFDQAMDEQRQRARAAR----QENEERV--VVPDLSGLVTQELKYD------------- 453 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S+ V ++Q G++VE A GQ+V ++ D TPFYAE GGQ+GD+G Sbjct: 454 ----------PQAESARVVLVLQDGKVVEAAHDGQEVALILDVTPFYAEGGGQVGDSGTL 503 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + +K +G H V G ++ + + +D RR S NH+ATHLLH Sbjct: 504 TAQYGTVAVVTARKLPDGTIYHVGSVTEGTIKPGDMVKIAVDAARRRDASRNHTATHLLH 563 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q GS + PD LRFD +H P+T +L +E+ VN++I +N+ V Sbjct: 564 AALKKVLGEHVNQAGSYVGPDRLRFDFSHFAPVTVEQLAEVENMVNEVILRNIAVGRIET 623 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 +E A GA AL G KY +RV VV ++ S LCGGTHVSST EI IVSE+ Sbjct: 624 TQELAREMGATALFGEKYGERVSVVIIDD-----FSKELCGGTHVSSTAEIGQFKIVSET 678 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 I +GIRRIEA+TG A ++ ++E L++ A LK ++VGR++ + + L +L Sbjct: 679 GIGSGIRRIEAVTGYAALEYIRSREEILQAAALALKSRPEDLVGRIDGVLARVKDLEKEL 738 Query: 773 IHAKRKL-QLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + VEDL +K I V ++ + D +L+S D ++ +++SG++ L Sbjct: 739 AALKTKLAKFAVEDLLANKKEINGVALVAGQVDAADMDDLRSTADLVRDRLRSGVVALGA 798 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ EK V++ + + +A ++ + AKV GGGGGGRP MAQ+GG K A+ Sbjct: 799 VTGEKVNFVVMATADAVARGVHAGNIIKEMAKV-AGGGGGGRPDMAQAGGKQPAKLADAL 857 >gi|260893293|ref|YP_003239390.1| alanyl-tRNA synthetase [Ammonifex degensii KC4] gi|260865434|gb|ACX52540.1| alanyl-tRNA synthetase [Ammonifex degensii KC4] Length = 874 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 358/897 (39%), Positives = 537/897 (59%), Gaps = 57/897 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL++F++ GH +LPS+SLIP DP+L++T +GMVPFK FTG KP ++ V T QK Sbjct: 6 IRQRFLDYFRRKGHVILPSASLIPAGDPSLLWTAAGMVPFKPYFTGAAKPEFRRVATCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R D+++VG+T RH TFFEMLGNFSFG YFK AI +AW+ +TKE LD RL+ Sbjct: 66 CLRT----QDIESVGKTARHLTFFEMLGNFSFGDYFKAEAIAMAWEFVTKELGLDIDRLW 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CI 183 +V+++DEEAF+LW K+ G+ ++I+R+ + NFW + GPCGPCSEI++D G C Sbjct: 122 FSVFEDDEEAFELWCKM-GVKPERIVRLGRDTNFWEIG-VGPCGPCSEIYYDFGPAFACG 179 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P G + +RY+EIWNLVF+Q+ + K L IDTGMGLER+ATVLQ T+ Sbjct: 180 PDCHVGC--DCDRYLEIWNLVFIQYYRDEKGNYLPLENKGIDTGMGLERVATVLQGVTSP 237 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 + DLF+ ++ A+E+ + +VI DH+R+ +F +A+G+LP+NEGRGYV+RR Sbjct: 238 FATDLFRDIVAAAERELRSPVPNRRV---KVIADHVRAVTFGVAEGVLPSNEGRGYVIRR 294 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 ++RRA+ Y L G EP + + A+C +MG YPEL+ + I +R+E+ERF TL Sbjct: 295 LLRRALLYGVLAGREEPFLGKVAAAVCDKMGEVYPELVANREHILRVIRAEEERFLGTLS 354 Query: 364 RGLVLL----DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +G+ LL + VL+ GK +L G+ AF+LYDT+G PL++ ++I +GLA +D F Sbjct: 355 QGMELLNRNIEQVLARGGK--VLPGEEAFRLYDTYGFPLELTEEICAEKGLA-VDKEGFK 411 Query: 420 QALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + +E QR RAR + G E+ + L+E+ G+ F+GY+ L Sbjct: 412 REMEAQRERARRARETVEYLGERERFYRELREEKGSVDFVGYEQL--------------- 456 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 N S +V A+V++ + A +G++VEVV D TPFYAE GGQ+ D G Sbjct: 457 -------NTRSRVV-ALVKEAKPQSSASAGEEVEVVLDVTPFYAEKGGQVSDKGVLRFPS 508 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + V++ EG+ VH V++G L+ + +D + RR+ + NH+ATHLLH AL Sbjct: 509 GEALVEYVEQPVEGMVVHRVKVQKGELKVGDEVEAAVDAERRRRTARNHTATHLLHQALK 568 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILG HV Q GS + PD LRFD H + +T E+K +E VN+I+ LPVVT + E+ Sbjct: 569 EILGPHVKQAGSLVAPDRLRFDFDHYQALTPEEIKRVEKRVNEIVLAALPVVTFTTSLEE 628 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GA AL G KY + VRVV + G +S LC GTH+ +T E+ + IV+E+S+ A Sbjct: 629 AQAMGAVALFGEKYGETVRVVKI-----GDYSIELCAGTHLRNTAEVGVFKIVAEASVAA 683 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----QLIH 774 RRIEA+TG+RA ++ ++ + +A LK + +VE +E + L + + Sbjct: 684 NTRRIEAVTGERALAYFEELEDDYRRIAFLLKAPARGLSQKVEAWLQEMKALARENEALR 743 Query: 775 AKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 K L E L +I V ++ + D+ L+S+ D L++K+ + ++L+G S + Sbjct: 744 DKLALYTMQELLDKVQEIDGVKVLAAKVEAPDTARLRSLADLLREKLGNASVVLLGASGD 803 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K ++++ T + R NA + + A+V+ GGGGGR Q+GG N + +A+ Sbjct: 804 GKVNLVVAATPGAVARGINAAQIVKAMAQVV-EGGGGGRAEFGQAGGKNPGRLGEAL 859 >gi|15618801|ref|NP_225087.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae CWL029] gi|15836425|ref|NP_300949.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae J138] gi|16752144|ref|NP_445511.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae AR39] gi|33242254|ref|NP_877195.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae TW-183] gi|6707750|sp|Q9Z714|SYA_CHLPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|4377211|gb|AAD19030.1| Alanyl tRNA Synthetase [Chlamydophila pneumoniae CWL029] gi|7189887|gb|AAF38754.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae AR39] gi|8979266|dbj|BAA99100.1| alanyl tRNA synthetase [Chlamydophila pneumoniae J138] gi|33236765|gb|AAP98852.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae TW-183] gi|269302680|gb|ACZ32780.1| alanyl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN] Length = 872 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 339/888 (38%), Positives = 507/888 (57%), Gaps = 52/888 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 ++IR+ FL+F+ H +LPSS + P NDP+++FTN+GM FK+IF +EK Y TT Sbjct: 4 NTIRSNFLKFYANRHHTILPSSPVFPHNDPSILFTNAGMNQFKDIFLNKEKVSYSRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFK AI AW++ F+ + Sbjct: 64 QKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKAEAIAFAWEVSLSVFNFNPEG 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW+ + L D+I R+T DNFWSMA TGPCG CSE+ FD+G Sbjct: 124 IYATVHEKDDEAFALWE--AYLPTDRIFRLTDKDNFWSMANTGPCGYCSELLFDRGPSFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P +GER++E WNLVFM+F + ++ LP +DTG GLER+ +++ Sbjct: 182 NASSPLDDTDGERFLEYWNLVFMEFNRTSEGSLLALPNKHVDTGAGLERLVSLIAGTHTV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 ++ D+ + LI +EQ++G Y ++ RVI DH+RS SF IADG+LP N RGYVLR Sbjct: 242 FEADVLRELIAKTEQLSGKVYHPDDSGAAFRVIADHVRSLSFAIADGLLPGNTERGYVLR 301 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 +I+RR++ Y R LG+ P + ++P+L MG AYPEL + I++ L E+E F KTL Sbjct: 302 KILRRSVNYGRRLGFRNPFLAEIVPSLADAMGEAYPELKNSLSQIQKVLTLEEESFFKTL 361 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 DRG LL VL ++G+ AFKL DT+G+P+D + +L +D+ +F++ Sbjct: 362 DRGGNLLQQVLKSSSSSSCISGEDAFKLKDTYGMPIDEIS-LLAKDYDYSVDMDTFHKLE 420 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 +E + R+R + + GT+E I+ E + ++FIGYD L F Sbjct: 421 QEAKERSRKNVVQ-SQGTSESIY---NELHLTSEFIGYDHLSCDTF-------------- 462 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDGI 539 ++AI+ + IV Q+ +V +PFYAE GGQ+GD+G C+ G I Sbjct: 463 ---------IEAIISKDHIVSSLQEKQEGAIVLKVSPFYAEKGGQVGDSGEIFCSEGTFI 513 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +T G+ VHH + +G L E ++ ++ R++++ NH+A HLLH AL Sbjct: 514 ---VTHTTSPKAGLIVHHGRISQGSLTVEAAVTAQVNRYRRKRIANNHTACHLLHKALEI 570 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 LG H+ Q GS + +R D TH + I+ +L IE VN+ I +N PV R D Sbjct: 571 TLGDHIRQAGSYVDDTKIRLDFTHPQAISPEDLLCIETLVNESIRENEPVDIREALYSDV 630 Query: 660 I-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 + +S G KY+D VRVVS HS LCGGTH +TG+I I E ++ Sbjct: 631 MNSSEIKQFFGDKYSDVVRVVSAG------HSHELCGGTHAEATGDIGFFRITKEHAVAM 684 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-----QLI 773 GIRRIEA+TG++A + + Q E L+ +A+ L+V + +V R+ +E ++ +L Sbjct: 685 GIRRIEAVTGEKAEATVHQQSEVLEEIATLLQVPRDQIVSRLTATLDERKQQDKRLNELE 744 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 ++ + +L+ +CH+ + + H ++E ++ L+ L ++I +I L K Sbjct: 745 NSLIQTKLDKLIHNCHQRQGITCLVHHLAEHENHRLQQYAQCLHQRIPEKLISLWTTEKN 804 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 K VL V++DL+ + +A DL + + GG GG+ AQ P Sbjct: 805 GKYIVLSRVSDDLITQGVHAQDLLK-AVLTPCGGRWGGKDQSAQGSAP 851 >gi|255321362|ref|ZP_05362522.1| alanyl-tRNA synthetase [Campylobacter showae RM3277] gi|255301515|gb|EET80772.1| alanyl-tRNA synthetase [Campylobacter showae RM3277] Length = 849 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 359/909 (39%), Positives = 537/909 (59%), Gaps = 85/909 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L FF GHE++PS+ L+P ND TL+FTN+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IREAYLNFFASKGHEIIPSAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPPIRTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAIAYAWEFVTQVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180 Y+TV++ D+EAF LW++ ++ ++I R +DNFW M +TGPCGPCSEIF+DQG Sbjct: 122 YVTVHESDDEAFALWEQ--HIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQGGEHFN 179 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E GG +G+R++EIWNLVFMQ+E+ + + LPK SIDTGMGLER+ +++ Sbjct: 180 TPEDYMGG------DGDRFLEIWNLVFMQYERSSDGKLTPLPKPSIDTGMGLERVTAIME 233 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 K +NYD LF LI+ ++ G Y + ++RVI DH+RS +FL+A G EGRG Sbjct: 234 GKFSNYDSSLFMPLIEEVAKLCGKPYAYESGASYRVISDHIRSVTFLLAQGTTFDKEGRG 293 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LLG EP M L+ +C MG Y L + K ++E +R E+ERF Sbjct: 294 YVLRRILRRAIRHGYLLGIREPFMYRLVDKVCELMGGHYAYLNEKKAAVKEQIRLEEERF 353 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+ GL L + L+ +I +G AFKLYDT G PLD+ D+L +GL +D F Sbjct: 354 LATIASGLELFESELART--KDIFSGKAAFKLYDTFGFPLDLTADMLREKGLK-VDEAKF 410 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++ + EQ++RA+A G G + + + +L EK+G +F GY+ L Sbjct: 411 DELMSEQKARAKAAWKGSGDKSAKGDFKALLEKFGENKFSGYEEL--------------- 455 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + T+ V +++ ++ +I++ +G++ +FD TPFYA++GGQ GD+G G Sbjct: 456 ----ERTSRVLALLDEDFKETQILK---AGEQGWAMFDVTPFYAQSGGQAGDSGEIEGVA 508 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + D QK G+ + + V++ L+ ++ L + Q R +++ +HSATHLLH AL Sbjct: 509 ---DVLDTQKFF-GLNLSNVAVKKE-LKIGDTVKLKVSEQ-RAEIARHHSATHLLHAALR 562 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ++LG+H++Q GS + LRFD +H K +T+ EL IE+ VN IA+++ T IM+ E+ Sbjct: 563 SVLGTHIAQAGSSVEASRLRFDFSHPKAVTAEELTKIENFVNSAIAESIAAKTEIMDIEE 622 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A SGA AL G KY D+VRV+S G S LCGGTHV++ +I +I E + A Sbjct: 623 AKNSGAIALFGEKYADKVRVLSF-----GEVSKELCGGTHVANLSQIGAFFITKEGGVSA 677 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+ + A +LA + G +EE+ E + + ++A +K Sbjct: 678 GVRRIEAVCSKAAL-----------NLAKAWR-------GEIEELKTELKSAEPMNAVKK 719 Query: 779 LQLNVEDLS--------CHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L+ ++ L H +A +VN ++ +D ++K+ +D + + + I+LV Sbjct: 720 LKAEIKSLKDKTKQAKDAHALAVVNVNETKLCVAVIDGGDIKATIDEFKNENEKAAILLV 779 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +++E K ++ V L A + + +A++L GG GGG+ A +GG N + A Sbjct: 780 QVNEEGKIAMAAGVKNAPL---KAGEWVKFTAQIL-GGNGGGKDDFATAGGKNVLAIEDA 835 Query: 889 IAGVASFLK 897 I F K Sbjct: 836 IRQALEFAK 844 >gi|6707748|sp|Q9XDM3|SYA_AQUPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|4587716|gb|AAD25871.1|AF027500_1 alanyl-tRNA synthetase [Aquifex pyrophilus] Length = 871 Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust. Identities = 360/898 (40%), Positives = 533/898 (59%), Gaps = 48/898 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ T+ QK Sbjct: 8 IRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ L + RLY Sbjct: 68 CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKERLY 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++VY +DEEA+++W + G+ +++I R+ DNFW M +TGPCGP SEI+ D+GE Sbjct: 128 VSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDTGPCGPSSEIYVDRGE----- 182 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 E ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ K +N++I Sbjct: 183 ---EYEGEERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEI 239 Query: 247 DLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D+ LI+ E+V+G KY + V RVI DHLR+ +F I+DG++P+NEGRGYV+RRI Sbjct: 240 DIIYPLIEFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRAM + LG TEP + + + M YPEL ++ ++ ++ E+ERF +TL Sbjct: 300 LRRAMRFGYQLGITEPFLYKGIDLVVDIMKEPYPELELSRDFVKGIVKGEEERFIRTLRS 359 Query: 365 GLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 G+ + V+ + + L G F YDT+G P+D++Q+I +GL ID+ F L Sbjct: 360 GMEYIQEVIEKALSEGRKTLTGKEVFTAYDTYGFPVDLIQEIAKEKGLE-IDLEGFQCEL 418 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EEQR RAR S + + + ++ LKE ++F+GY+ L Sbjct: 419 EEQRERARK-SFKIETKEVKPVYAHLKELGITSRFVGYEHLE------------------ 459 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 + V I+ EIV E G++ E++ +TPFY E GGQ+GD+G D + Sbjct: 460 -----YETEVLGIIVGDEIVSEIKEGEEGEIILRETPFYPEGGGQIGDSGIIETDKGIFK 514 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D Q+ EGI VH + +G + + + +D + R + NH+ATHLLH AL +LG Sbjct: 515 VEDTQRPTEGIIVHIGKLLKGKISVKDIVHARVDKERRWDIMRNHTATHLLHAALRNLLG 574 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 HV Q GS + LRFD TH P+T E+K IE+ VN+ I +NLPV M ++A+ + Sbjct: 575 EHVRQAGSLVADKYLRFDFTHFSPLTEEEIKRIEELVNEKIRENLPVSVMEMAYQEALQT 634 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A+ KY +RVRV+S G S LCGGTHVS+TG+I I+SESS+ AG+RR Sbjct: 635 GAIAIFEEKYGERVRVISC-----GEFSKELCGGTHVSATGDIGYFKIISESSVGAGVRR 689 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK---L 779 I A TG+ A + + LK +++ L V + VV +VEE+ EE ++ + K + L Sbjct: 690 IVAQTGRWAVNTAFEEHTTLKKVSNALGVKEDEVVQKVEELKEEIKEKEKEIQKLRQEIL 749 Query: 780 QLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 +L + E + + ++ + +V+ +EL+++ D L+++ ++ + KE K + Sbjct: 750 KLQIREKVKEERHRELTLYYGVFEDVEPEELRNLADILRQRTGKDVVFIAS-KKEGKINF 808 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +I ++ + A +L R + GGGGGR +AQ GG +K D+++ + L Sbjct: 809 VIASSKGISKEVRANELIR-QVGKVLKGGGGGREDLAQGGGKAPDKFDESVKLLKELL 865 >gi|254724685|ref|ZP_05186468.1| alanyl-tRNA synthetase [Bacillus anthracis str. A1055] Length = 880 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 356/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILSEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 GC + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GCLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|118475098|ref|YP_892193.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40] gi|205830013|sp|A0RPR0|SYA_CAMFF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118414324|gb|ABK82744.1| alanyl-tRNA synthetase [Campylobacter fetus subsp. fetus 82-40] Length = 845 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 363/903 (40%), Positives = 532/903 (58%), Gaps = 77/903 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF+ GHE++ S+ L+P +D TL+FTN+GMVPFK+IFTG +P T+ Q Sbjct: 3 IRKEYLDFFKSKGHEIITSAPLVP-DDATLLFTNAGMVPFKSIFTGDVPRPNPPIRTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ L + +L Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKDAISYAWEFVTEVLKLPKDKL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180 Y+TV+++D+EA++LW+K + D+I R DNFW+M +TGPCGPCSEIF+DQG Sbjct: 122 YVTVHEKDDEAYELWQKF--IQKDRIYRFGDKDNFWAMGDTGPCGPCSEIFYDQGSEHFN 179 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E GG +G+R++EIWNLVFMQFE+ LPK SIDTGMGLER+ + + Sbjct: 180 SDEDYMGG------DGDRFLEIWNLVFMQFERSKDGTMTPLPKPSIDTGMGLERVTAIKE 233 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +K +NYD LF LI ++ +YE ++RVI DH+RS +FL+A G+ EGRG Sbjct: 234 DKFSNYDSSLFMPLINEVAKLCHKQYEYKTGASYRVISDHIRSVTFLLAQGVNFDKEGRG 293 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + LLG EP M L+ + MG Y L + K ++E ++ E+ERF Sbjct: 294 YVLRRILRRAVRHGYLLGIKEPFMYKLVDKVVELMGEHYSYLKEKKEYVKELIKLEEERF 353 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 T+ GL L + L+ + + +G+VAFKLYDT+G PLD+ D+L +GL+ +D F Sbjct: 354 LATIVAGLDLFNEELAKTSSN-VFSGEVAFKLYDTYGFPLDLTADMLREKGLS-VDEAKF 411 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 + + EQ++RA+A G G E F +L E++G +FIGYD L+ S Sbjct: 412 DALMNEQKARAKASWKGSGDAAKESGDFKTLLEEFGENKFIGYDNLKSS----------- 460 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S ++ + + + V E +G+ V+ D TPFYA++GGQ GDTG +G+ Sbjct: 461 -----------SKVLALLNSEFKRVNELKNGEIGYVMLDSTPFYAQSGGQCGDTGM-LGE 508 Query: 538 GIRLQITDVQK----KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 Q D +K I ++I I+ E+SL NR ++ +HSATHLL Sbjct: 509 N---QALDTKKYFGLNLSMIEAKNSIKIGDIVLCEVSL-------NRLEIRRHHSATHLL 558 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG+H++Q GS + D LRFD +H KP+T EL+ IE+ VN+ I + P I Sbjct: 559 QAALRNVLGAHIAQAGSSVEADKLRFDFSHPKPVTKEELEKIENFVNEAILKGAPAKIEI 618 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ ++A SGA AL G KY D+VRV+++ S LCGGTHV + EI +IV E Sbjct: 619 MDIQNAKKSGAIALFGEKYADKVRVLTLG------PSKELCGGTHVENLNEIGSFFIVRE 672 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S + AG+RRIEA+ + A +++ + LK + + ++++ +E + LQ Sbjct: 673 SGVSAGVRRIEAVCSKAALELSKEFRKEINDIKDSLK--GADPLLSIKKLKDEIKSLQ-- 728 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 K N +DL + D+N + ++S+ D ++KS +D L+ K ++ L G+ K+ Sbjct: 729 -NDLKNASNTKDLD---VKDINGVKVVVSKFDG-DIKSKIDELKNKFDKVVVFLAGV-KD 782 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K S + + A +L + A ++ GGGGGGR A +GG + +K D+A+ Sbjct: 783 GKVS---LGSGSKNTSIKAGELVKTVAPIV-GGGGGGRDDFATAGGKDESKIDEALNAAT 838 Query: 894 SFL 896 F+ Sbjct: 839 KFI 841 >gi|254931439|ref|ZP_05264798.1| alanyl-tRNA synthetase [Listeria monocytogenes HPB2262] gi|293582990|gb|EFF95022.1| alanyl-tRNA synthetase [Listeria monocytogenes HPB2262] Length = 879 Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 365/927 (39%), Positives = 525/927 (56%), Gaps = 80/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ++G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +VEE +G + +V+F +TPFY Sbjct: 464 S----------------------TEQVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 ++ + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 +D + K GI++L + +K + V E + ++A L + A GG GGGR Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ+GG N + A+ V++++K+ Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876 >gi|269925210|ref|YP_003321833.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] gi|269788870|gb|ACZ41011.1| alanyl-tRNA synthetase [Thermobaculum terrenum ATCC BAA-798] Length = 879 Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 371/909 (40%), Positives = 532/909 (58%), Gaps = 53/909 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ FLEFF+ GH ++PSSSL+P DPTL+FTNSGMV FK++F G+E Y TT Sbjct: 4 SEIRSKFLEFFEARGHTVVPSSSLVPAKDPTLLFTNSGMVQFKDVFLGRESRSYTRATTA 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDL+NVG + RH TFFEMLGNFSFG YFK AI AW+ +T+ L+ R Sbjct: 64 QKCMRAGGKHNDLENVGPSARHLTFFEMLGNFSFGDYFKREAIGYAWEFVTQVLGLEPSR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+ TV+ D+EA LW++++GL +IIR+ DNFW MA+ GPCGP SEIF+D+G Sbjct: 124 LWATVHYTDDEAASLWQEVAGLPESRIIRMGDEDNFWQMADVGPCGPNSEIFYDRGPEKG 183 Query: 185 GGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + + R+ E WNLVFMQ+ Q R LPK +IDTG+GLER + ++Q + Sbjct: 184 CGDPNCTPAHDCGRFWEFWNLVFMQYYQDESGNRTPLPKKNIDTGLGLERTSAIMQGVDS 243 Query: 243 NYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 ++ DLF ++ +++ G E IV +RVI DH RS +FLIADG+ P NEGR YV Sbjct: 244 IFETDLFVPIMDEVQRIAGHSDEDRRREIVAYRVIADHSRSLAFLIADGVTPGNEGRSYV 303 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + R +G + + MG Y EL I++ R+E+E F + Sbjct: 304 LRRIIRRAIRFGRRIGIEGHFLSDTARVVVDIMGHHYTELEDQWSFIDKVTRAEEEHFSR 363 Query: 361 TLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL RG+ LD ++ L G+ EI G+ AF+LYDT+G PLD+ ++ RG + +D Sbjct: 364 TLARGVAQLDDLIDKLSASGQKEI-PGEDAFRLYDTYGFPLDLTLELARDRGFS-VDTEG 421 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSKFMKEDRKVL 476 F +A+E QR+++RA S T K+ + G TQF GY L ED Sbjct: 422 FKRAMERQRAQSRA-----ASTFTAKMPAAYAALSGEPTQFTGYTTL-------ED---- 465 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V AI+++GE+V++ GQ+ E++ D+TPFYAEAGGQ+GDTG G Sbjct: 466 ------------TGRVMAIIREGELVDKVEHGQEAEILLDRTPFYAEAGGQVGDTGVITG 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + D Q+ G +H V G + ++ L +D + R+ + NH+ATH+LH Sbjct: 514 PEGDFHVLDTQRPVNGYILHRGRVLHGSISVGQNVDLVVDARRRQDIMRNHTATHILHKT 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG H Q GS + PD LRFD TH ++ E IE +ND+ + V + Sbjct: 574 LRDVLGPHARQAGSLVAPDRLRFDFTHPSQLSDEEFFEIERIINDVSQDDRKVYAQEKPY 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +AIASGA AL G KY D VRVVS+E + S LCGGTHV TGEI +YI SE SI Sbjct: 634 TEAIASGAMALFGEKYGDIVRVVSIE-----DYGSELCGGTHVHHTGEIGPIYITSEGSI 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIH 774 +G+RR+EA+TG+ A + + E L+ L + LKV + +V + E R + Q+ Sbjct: 689 ASGVRRVEAVTGRGAIKYARERMELLERLGAKLKVPTSEIERQVALLQERLREQERQIEQ 748 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKE-LKSVMDALQKKIQSGIIMLVGIS 831 +R+L D + V+ ++++ +DS+E + + D L+ +++S +++VG Sbjct: 749 LRRQLAAGEIDQMLRNVRQVDGTKLLVAQTSLDSREAMSDLADRLRDRLRS-GVVVVGSV 807 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K S++ VVT DL+ + V +L ++ L GGGGGGRP A++GG K ++A+ Sbjct: 808 LQGKPSIVAVVTPDLVQK--GVHAGKLVKEISALVGGGGGGRPDRAEAGGRFPEKLEEAL 865 Query: 890 AGVASFLKK 898 V L + Sbjct: 866 GSVDEVLAR 874 >gi|331084749|ref|ZP_08333837.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410843|gb|EGG90265.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 879 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 365/910 (40%), Positives = 526/910 (57%), Gaps = 58/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AIQ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIQWSWEFLTEVVGLDAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +DEEAF++W K G+ A++I + DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYVDDEEAFEIWNKEMGIPAERIFKFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V+Q+ Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGNYSELEQKNIDTGMGLERLASVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L + + Y + + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 241 SIFDVDTVKALRDKVCEAANVTYKKDADQDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + K I L E+++F Sbjct: 301 VLRRLIRRAARHGRLLGIEGKFLAKLSETVIEGSKDGYPELDEKKEFIFNVLTQEEDKFD 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + + +++L+G+ AFKLYDT+G PLD+ ++IL +G GID Sbjct: 361 KTIDQGLHILSVMQEEMNQAGEKVLSGENAFKLYDTYGFPLDLTKEILEEKGY-GIDEEG 419 Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F A+E+QR +AR + +G + ++I S+ T+F+GYD L Sbjct: 420 FQAAMEKQRVQAREARKETNYMGADATVYDEIDPSV-----TTEFVGYDTLS-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + + EI E GQ+ + ++TPFYA GGQ GDTG Sbjct: 467 ---------------CDSKITVLTTESEITEAVADGQRATIFVEKTPFYATMGGQEGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + K G F H V +G+ T ++ L + + R NHSATHL Sbjct: 512 IIHTADAEFAVEETIKLLGGKFGHIGRVTKGMFGTGDTVTLEVKSKERLNTCKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS +TPD LRFD H +T E++++E VN+ IA+N PVVT Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTREEIEAVEALVNEEIAKNNPVVTE 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +MN E+A +GA AL G KY + VRVV++ G S LCGGTHVS+TG I IVS Sbjct: 632 VMNVEEAKKTGAMALFGEKYEEDVRVVTM-----GDFSKELCGGTHVSNTGLITTFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES + AG+RRIEA+TG ++ Q++KL A LK + N+ ++ + E + L Sbjct: 687 ESGVAAGVRRIEALTGDGVFAYYKAQEQKLAEAAKLLKATPENLAEKISHLLAETKSLHS 746 Query: 771 QLIHAKRK-LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ K K Q V D+ +I V ++ + +VD L+ + D L++K+ G++++ Sbjct: 747 EIESLKSKAAQEAVGDVMNQVEEICGVKVLAVRVEDVDMGGLRELGDQLKEKLGEGVVVI 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K S++ TE L + +A +L + A ++ GGGGGGRP+MAQ+GG N D Sbjct: 807 ASAAG-GKVSLMATATEGALKKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNPEGID 864 Query: 887 QAIAGVASFL 896 A++ L Sbjct: 865 AALSKAKEVL 874 >gi|229071897|ref|ZP_04205108.1| Alanyl-tRNA synthetase [Bacillus cereus F65185] gi|228711193|gb|EEL63157.1| Alanyl-tRNA synthetase [Bacillus cereus F65185] Length = 880 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 540/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIDATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T + S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVAIESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVENTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|323490022|ref|ZP_08095243.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2] gi|323396318|gb|EGA89143.1| alanyl-tRNA synthetase [Planococcus donghaensis MPA1U2] Length = 874 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 367/922 (39%), Positives = 534/922 (57%), Gaps = 73/922 (7%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+ + IR +++FF++ GH+ PS+ L+P DP+L++ NSG+ K F G+ P Sbjct: 1 MKNLKAEDIRQMYIDFFKEKGHDQEPSAPLVPFEDPSLLWINSGVATLKKYFDGRVIPNN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT E Sbjct: 61 PRIVNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGEYFKTEAIHWAWEFLTDEK 116 Query: 118 ---FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 FD D +L +T++ EDEEA+ +W G+ A++IIR+ NFW + E GP GP SE Sbjct: 117 WIGFDAD--KLSVTIHPEDEEAYAIWLNEVGVPAERIIRL--EGNFWDIGE-GPSGPNSE 171 Query: 175 IFFDQGECI------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 IF+D+GE P PG E ERY+EIWNLVF QF +LPK +IDTGM Sbjct: 172 IFYDRGESYGNDISDPELYPGG--ENERYLEIWNLVFSQFNHNPDHTYTLLPKQNIDTGM 229 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286 GLERMA V Q+ NYD DLF +I+ +E+++G KY N ++ +VI DH+R+ +F I Sbjct: 230 GLERMACVAQDVPTNYDTDLFIPIIKKTEEISGKKYGENAEMDMAFKVIADHIRTVAFAI 289 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ +A+ LG +P M L+P + M S YPE+ + Sbjct: 290 GDGALPSNEGRGYVLRRLLRRAVRFAKKLGVEQPFMYDLVPVVGDVMKSFYPEVNAKQDF 349 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQD 403 I ++ E++RF +TL GL +L V+ G++EI G+ AF+LYDT+G P+++ ++ Sbjct: 350 IIRVMKLEEQRFHETLHDGLTILSSVIEKQKAAGQNEI-PGEDAFRLYDTYGFPVELTEE 408 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDL 462 G+A +D F A++EQR RAR + S ++ ++ ++KE A++FIGY Sbjct: 409 YAEEEGMA-VDHKGFETAMQEQRDRARNARQNVNSMQSQSEVLGNIKE---ASEFIGYSQ 464 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 D VL I++ GE+V+ A G++VEV+ DQTPFYA Sbjct: 465 ------TVSDANVLF-----------------IIKDGELVDSAQEGEEVEVILDQTPFYA 501 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+ D G D ++ + +V+K G +H V G L T+ S+ +D RR Sbjct: 502 ESGGQIADRGTLSNDFVQASVLNVKKAPNGQNLHSVRVNTGEL-TKTSVQAQVDASERRH 560 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NH+ATHLLH AL +LG+HV+Q GS + PD LRFD +H +T EL++IE VN+ Sbjct: 561 TVKNHTATHLLHQALKDVLGTHVNQAGSYVGPDRLRFDFSHFGQVTKEELETIEQIVNEK 620 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + + V T N ++A GA AL G KY D VRVV + G +S LCGG HV +T Sbjct: 621 VWDGIAVQTGYYNLQEAKEMGAMALFGEKYGDVVRVVEI-----GGYSLELCGGVHVLNT 675 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 EI L IVSE I AGIRRIEA+TG+ A +L + L++ A LK S ++V +V+ Sbjct: 676 SEIGLFKIVSEGGIGAGIRRIEAVTGKGAYENLKDSETILENAAGLLKSSPRDMVQKVQT 735 Query: 763 IWEEYRKLQ------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + E + LQ L + D + K+ D+ +S + D+ +L+ ++D L Sbjct: 736 VQAEMKSLQRENESLLAKISNAQSAGILD-AAQKVGDITVLSVKVEAKDNNQLRQLLDDL 794 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMA 875 + K+ +I+L G + K + VT+DL ++A + + A+ GG GGGRP MA Sbjct: 795 KSKMDKAVIVL-GATDGDKVMLAAGVTKDLAGGDYHAGQIVKHVAEQC-GGKGGGRPDMA 852 Query: 876 QSGGPNGNKADQAIAGVASFLK 897 +G + +K D+A+ V S +K Sbjct: 853 MAGAKDASKLDEALESVYSLVK 874 >gi|299822850|ref|ZP_07054736.1| alanine--tRNA ligase [Listeria grayi DSM 20601] gi|299816379|gb|EFI83617.1| alanine--tRNA ligase [Listeria grayi DSM 20601] Length = 876 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 364/917 (39%), Positives = 536/917 (58%), Gaps = 65/917 (7%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSQEVRQMFLDFFKEKGHTIEPSASLVPANDPTLLWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 ++ QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRLSNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIVWAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY ED+EA +WK+ GL+ I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPEKLYVTVYPEDKEAKAIWKEKVGLADAHIVEI--EDNFWDIG-VGPSGPDSEIF 173 Query: 177 FDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+GE G P E E ERY+EIWNLVF QF LPK +IDTGMGLE Sbjct: 174 YDRGESY-GNDPDDPELYPGGENERYLEIWNLVFSQFNHNPDGSYTPLPKQNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIAD 288 RM +++Q+ N++ DLF I+ +E++ ++Y GN+ V +VI DH+R+ +F I D Sbjct: 233 RMVSIIQDAPTNFETDLFMPTIKETEKLANVRY-GNSSETDVAFKVIADHIRTVAFAIGD 291 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGYVLRR++RRA+ YA+L+G EP M L+P + + M S YPE+ + + I+ Sbjct: 292 GALPSNEGRGYVLRRLLRRAVRYAKLIGINEPFMYRLVPVVGSIMKSYYPEVSKQESFIQ 351 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +RSE+ERF +TL+ GL +L+ +L + + ++G FKLYDT+G P+++ ++ Sbjct: 352 KIIRSEEERFHETLNEGLAILETILKEAKASGEATISGSAIFKLYDTYGFPVELTEEYAE 411 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 GLA +D F +++QR RAR + S + ++ +L E + FIGY+ Sbjct: 412 DHGLA-VDHEGFEAEMKQQRERAREARADVKSMQVQGELLATLTE---PSAFIGYEN--- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T S IV ++Q +V+E +G++ +V+F +TPFYAE+G Sbjct: 465 -------------------TESRSQIV-YLIQNDTLVDEVKAGEEAQVIFRETPFYAESG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ D G + DVQK +H VE G+L++ + L +D R+ Sbjct: 505 GQIADHGTIQSTSGLAYVKDVQKAPNKQNLHRIFVEEGVLKSGEEVDLRVDTYKRKSTVK 564 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG HV+Q GS + P+ LRFD +H I+ AEL +E VN+ I + Sbjct: 565 NHTATHLLHRALKNVLGEHVNQAGSLVEPERLRFDFSHFSQISEAELAEMEAAVNEKIWE 624 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PVV M ++A A GA AL G KY D VRVV V G +S LCGG HV +T EI Sbjct: 625 QIPVVIEEMPIDEAKALGAMALFGEKYGDIVRVVQV-----GRYSIELCGGVHVKNTSEI 679 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L I+SES I AG RRIEA+TG+ A + Q+ LK A+ LK + +V+++ Sbjct: 680 GLFKIISESGIGAGTRRIEAVTGEAAYRFVTEQETTLKETAAKLKTNSSEAPQKVDQLLA 739 Query: 766 EYRKLQLIHAKRKLQL-NVEDLSC-HKIADVNFMSHIISEVDSK---ELKSVMDALQKKI 820 E ++++ + +L N E + + +VN + I +V++K +L+ +D + K Sbjct: 740 ELKEVKRENDSLLAKLANTESAAIFEQPEEVNGVPVIAKKVNAKDMNQLRQFVDNWKDKQ 799 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGG 879 G+++L S+E K +++ V+E ++ A L + ++A+V GG GGG+P MAQ+GG Sbjct: 800 LEGVLVL-ATSEEGKVNLIAAVSEAYRSKYPAGKLIKEVAARV--GGNGGGKPDMAQAGG 856 Query: 880 PNGNKADQAIAGVASFL 896 N +A+A V ++ Sbjct: 857 KNPEALPEALAFVKEWI 873 >gi|289434784|ref|YP_003464656.1| hypothetical protein lse_1419 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171028|emb|CBH27570.1| alaS [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 879 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 361/923 (39%), Positives = 532/923 (57%), Gaps = 72/923 (7%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA +W++ GL+ + I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLTDEHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDENDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ++G+KY E N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + K ++++ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---STFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ I+Q +V+E +G + +++F +TPFY Sbjct: 464 T----------------------TEYVSEIL-YIIQNDALVDEVAAGSEAQLIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H +V+ G+L T ++ L+++ RR Sbjct: 501 AESGGQVADKGTIQSETGLAYVEDVQKAPNKQNIHRVVVKEGVLTTGDTVKLSVNKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN Sbjct: 561 ETVKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNK 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQIAVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK + ++E Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKAAYHFVTEQENTLKHAANLLKTTTKETPQKIE 735 Query: 762 EIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + + R+++ + +L D+ S +I VN ++ ++ D +L+ +D Sbjct: 736 LLQADLREVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNW 795 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 + K GI++L G + K +++ V+ED + ++A L + A GG GGGRP MA Sbjct: 796 KDKKIGGILVL-GAVQGDKVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMA 853 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q+GG N + A+ V++++K+ Sbjct: 854 QAGGKNPAELGSALDYVSTWVKE 876 >gi|217964349|ref|YP_002350027.1| alanyl-tRNA synthetase [Listeria monocytogenes HCC23] gi|217333619|gb|ACK39413.1| alanyl-tRNA synthetase [Listeria monocytogenes HCC23] gi|307571085|emb|CAR84264.1| alaS [Listeria monocytogenes L99] Length = 879 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 365/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +VEE +G + +V+F +TPFY Sbjct: 464 S----------------------TEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNIHRVSVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 ++ + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 +D + K GI++L + +K + V E + ++A L + A GG GGGR Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ+GG N + A+ V++++K+ Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876 >gi|228954673|ref|ZP_04116696.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805000|gb|EEM51596.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 880 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIDATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVENTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|229048096|ref|ZP_04193669.1| Alanyl-tRNA synthetase [Bacillus cereus AH676] gi|228723251|gb|EEL74623.1| Alanyl-tRNA synthetase [Bacillus cereus AH676] Length = 880 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 540/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K++ +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKINPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|89100981|ref|ZP_01173826.1| alanyl-tRNA synthetase [Bacillus sp. NRRL B-14911] gi|89084317|gb|EAR63473.1| alanyl-tRNA synthetase [Bacillus sp. NRRL B-14911] Length = 877 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 366/917 (39%), Positives = 539/917 (58%), Gaps = 72/917 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FLEFF++ GH + PS+ L+P +DP+L++ NSG+ K F G+ P +T Sbjct: 7 SEIRRLFLEFFKEKGHSVEPSAPLVPHDDPSLLWINSGVATLKKYFDGRVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT E D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIDWAWEFLTDERWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +L +T++ EDEEAF +W G+ ++IIR+ NFW + E GP GP +EIF+D+G Sbjct: 123 EKLSVTIHPEDEEAFSIWTNKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGPE 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 180 YGDDQNDPELYPGG------ENERYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGI 290 MA+V+Q N+D DLF +I A E+++G KY +N + +VI DH+R+ +F I DG Sbjct: 234 MASVVQNVATNFDTDLFMPIIHAVEKISGSKYGESNEQDTAFKVIADHIRTVAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ + P M L+ + M YP++ + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQININRPFMFELVDVVGEIMADFYPQVTEKAEFIKKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L V+ + I+ G F+LYDT+G P+++ ++ Sbjct: 354 IKNEEERFHETLNDGLSILSSVIKKEKEKGSNIIPGSDVFRLYDTYGFPVELTEEYAEEE 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ ID F +E QR RAR +GS E + +K + ++F+GY+ L Sbjct: 414 GMK-IDQDGFEAEMEGQRERARTARQDVGSMKVQEGVLGDIKTE---SRFVGYEGLEAK- 468 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S+V I++ G++ E A +G++V+++ DQTPFYAE+GGQ Sbjct: 469 ----------------------SVVAVIIKDGQVAEAAGAGEEVQLILDQTPFYAESGGQ 506 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G G+G+++ I DVQK G +H A+VE GIL TE + +D +R ++ NH Sbjct: 507 IADNGVLEGEGVKVIIKDVQKAPNGQNLHSAVVESGILETEAGVTAKVDPDSRNKVIKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV+Q GS + PD LRFD +H + EL+ IE+ VN+ I +L Sbjct: 567 TATHLLHQALKDVLGTHVNQAGSLVGPDRLRFDFSHFGQVKEDELEKIEEIVNEKIWSSL 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 VV ++A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 627 NVVIENKGIDEAKAMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVRNTSAIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I+SES I AG RRIEA TG+ A L Q L A+ LK S +V RV+ + E Sbjct: 682 FKIISESGIGAGTRRIEAATGEAAYKLLKEQVNILTEAAASLKSSPRDVASRVDALLGEM 741 Query: 768 RKLQLIHAKRKLQL-NVEDLS-CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822 R+LQ + +L N+E S K + N ++++ ++V D L+++ D L++K+ S Sbjct: 742 RQLQRENESLSAKLGNIEAGSLVSKAKEENGITYLAAKVQAADMNNLRNMADDLKQKLGS 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGP 880 +++L G E K +++ VT+D +++ ++A + + ++A+ GGGGGRP MAQ+GG Sbjct: 802 AVVVL-GSVNEGKVNLIAAVTKDYIEKGYHAGKVIKEVAARCG--GGGGGRPDMAQAGGK 858 Query: 881 NGNKADQAIAGVASFLK 897 + K + A+ V ++K Sbjct: 859 DPEKLESALQFVEEWVK 875 >gi|313608702|gb|EFR84533.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL F2-208] Length = 879 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 365/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKSLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +VEE +G + +V+F +TPFY Sbjct: 464 S----------------------TEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRVSVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 ++ + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 +D + K GI++L + +K + V E + ++A L + A GG GGGR Sbjct: 791 FVDNWKDKKIGGILVLGAVEGDKVNLISAVSEEAIKSGYHAGKLLKEVATRC-GGNGGGR 849 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ+GG N + A+ V++++K+ Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876 >gi|301335327|ref|ZP_07223571.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2tet1] gi|301336313|ref|ZP_07224515.1| alanyl-tRNA synthetase [Chlamydia muridarum MopnTet14] Length = 875 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 342/883 (38%), Positives = 505/883 (57%), Gaps = 47/883 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y TT Sbjct: 4 NTLRSNFLKFYANRNHTPVTSSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 64 QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFDPDF 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW+K L DKI R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDKIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRASDGTLLALQKKCVDTGAGLERLVSLLAETETV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RGYVL Sbjct: 242 FEADVLRHLIAKVENLSGTTYSPTESKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RRA+ Y + LG+ P + ++P+L MG AYPEL ++ I+E L +E+E F KT Sbjct: 302 RKILRRAVNYGKRLGFHRPFLAEVVPSLVETMGEAYPELQASETQIQEVLTTEEEHFFKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL ++G+ AFKL DT+GLP+D + +L +D+ +F + Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDHDYTVDMETFEKL 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 E + R+R ++ S + I+ L + ++F+GY +L F Sbjct: 421 EMEAKERSRKNTAKTTSDSN-SIFLDL-DPTNTSEFVGYHMLSCDTF------------- 465 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 ++ IV+ EI G++ E++ TPFYAE GGQ+GD+G + Sbjct: 466 ----------IEGIVKYNEIATTLEEGEEGEIILRTTPFYAEKGGQIGDSGEIFCESGTF 515 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++ G+ VHH + +G L+T M++ ++ R++++ NH+ HLLH AL L Sbjct: 516 LVSHTTTPKAGLIVHHGKLSQGSLQTTMAVTAQVNQNLRKKIANNHTGCHLLHKALEITL 575 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R D + Sbjct: 576 GEHIRQAGSYVDSKKIRLDFTHNKALSPEDLLAIETIVNEKIRENDPVTIREALYSDVTS 635 Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 S G KY D VRVVS + S LCGGTH +TG+I I E ++ GI Sbjct: 636 SSEIKQFFGDKYGDVVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778 RRIEAITG+ A + GQD L +AS ++ + ++ ++ + EE R+L Q+ + + Sbjct: 690 RRIEAITGEDAETLARGQDADLNEIASVIQSPKDQILVKIRNVIEEKRELAKQVADLENQ 749 Query: 779 L-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L Q +V+ L +C KI + ++ ++++E + + ++ +AL K+I + I L K + Sbjct: 750 LVQQHVKSLLPACDKIDETLYLGYLLTEEEGQRIQQYANALHKEIPANFISLWVTEKSGR 809 Query: 836 ASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 VLI V++DL+ R V L L A GG GG+ AQ Sbjct: 810 YIVLIRVSDDLIKRGIHAQVLLEELLAPY--GGRCGGKAISAQ 850 >gi|42783517|ref|NP_980764.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 10987] gi|48428502|sp|P61697|SYA_BACC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|42739446|gb|AAS43372.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 10987] Length = 880 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 356/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYADSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K+QS ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLQSAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|258511993|ref|YP_003185427.1| alanyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478719|gb|ACV59038.1| alanyl-tRNA synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 879 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 355/910 (39%), Positives = 527/910 (57%), Gaps = 64/910 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F +FF + GH +LPS L+P +DPTL++ N+GM P K F G+E P + QK Sbjct: 9 IRRAFKQFFAERGHMVLPSFPLVPKDDPTLLWINAGMAPLKPYFDGREIPEVPRIVDAQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++ VG T RH TFFEMLGNFSFG YFK AI AW+ LT+ +LD R+ Sbjct: 69 CIRT----NDIEEVGHTARHQTFFEMLGNFSFGDYFKLEAITWAWEFLTQVLELDPERIS 124 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +T++++D+EAF++W GL A +I R DNFW + E GPCGPCSEIF+D+GE G Sbjct: 125 VTIHEDDDEAFEVWHHRVGLPASRIYR-GKEDNFWEIGE-GPCGPCSEIFYDRGEAYGCG 182 Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P + +R++EIWNLVF QF + LPK +IDTG GLER+A++LQ+ NN+ Sbjct: 183 SPDCKPGCDCDRFLEIWNLVFTQFNKNADGSYSPLPKKNIDTGSGLERLASILQDVPNNF 242 Query: 245 DIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 + DLF+ +I + +++G Y + V+ ++I DH+R+ +F I DG+LP+NEGRGYV+R Sbjct: 243 ETDLFRPIINRAAELSGRPYGRSAEDDVHLKIIADHVRTVTFAIGDGVLPSNEGRGYVIR 302 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RRA+ R LG P + L+ + MG YPE+ + + LIE +R+E+ERF +TL Sbjct: 303 RLLRRAVRSGRKLGVERPFLYELVAVVDRIMGDDYPEVREKRSLIERVVRTEEERFLQTL 362 Query: 363 DRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 G LL+ + + + +L+G+ AF+LYDT+G P+D+ +I +G+A +D F + Sbjct: 363 AAGEELLNRTIEEVKARGETVLSGEAAFRLYDTYGFPIDLTVEIAREKGIA-VDREGFER 421 Query: 421 ALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 LEEQR+RAR A + G + + E ++F+GYD L Sbjct: 422 ELEEQRARAREARQVAEGMQSQRGALETFTE---PSRFVGYDEL---------------- 462 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V + + + Q G+ V+ G++ +V+ D TPFYAE+GGQ+GD G +G Sbjct: 463 -------TVDATIIGLFQDGDRVDGLAIGEEGQVILDVTPFYAESGGQVGDRGEIVGANG 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + ++ DVQK G V V G L S+ +D RR + NH+ATHLLH AL Sbjct: 516 KAEVLDVQKAPHGQHVMRVRVVDGSLLQGDSVRAHVDEDFRRDIVKNHTATHLLHKALRD 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG+HV+Q GS + P+ LRFD +H P+T EL +E VND I ++ V R M+ ++A Sbjct: 576 VLGTHVAQAGSLVEPERLRFDFSHFGPLTDEELAEVERRVNDEIWRDHAVHIREMDLDEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA AL G KY RVRVV S LCGG HV T I I SE+ I +G Sbjct: 636 KAMGAMALFGEKYGQRVRVVQAG------ESIELCGGCHVPRTSVIGQFLITSETGIASG 689 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---------KL 770 RRIEA+TG+ A ++E+L+ +A LK + VV R + + +E R K Sbjct: 690 TRRIEAVTGRYAYRVAREREERLRQVADALKTNVSTVVERAQRVVQEMRELERELESAKA 749 Query: 771 QLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 +L HA+ +L NVE +A V + +S++D L+ ++D ++ ++ S +++++G Sbjct: 750 RLAHARVDELVANVE-----TVAGVPVIRAALSDLDMDGLRQLVDEIKARVDS-VVVVLG 803 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + V++D R +A ++ + A V GGGGGGRP +AQ+GG + K +A Sbjct: 804 SAHRGKVQFVAYVSKDWQSRGLHAGEIVKQVAAVT-GGGGGGRPDLAQAGGRDAAKLAEA 862 Query: 889 IAGVASFLKK 898 I V L++ Sbjct: 863 IQKVGEILEQ 872 >gi|152976803|ref|YP_001376320.1| alanyl-tRNA synthetase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|205829984|sp|A7GT67|SYA_BACCN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|152025555|gb|ABS23325.1| alanyl-tRNA synthetase [Bacillus cytotoxicus NVH 391-98] Length = 880 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 537/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFKEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWHEKIGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E ERY+E+WNLVF QF LPK +IDTGMGLERM +++ Sbjct: 180 Y-GNDPSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSIV 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPAN 294 Q N+D DLF +I A+E ++G KY + + +VI DH+R+ +F + DG LP+N Sbjct: 239 QNVPTNFDTDLFMPMIGATESISGEKYRSGDAEKDMAFKVIADHIRTVTFAVGDGALPSN 298 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+++ K I + +++E Sbjct: 299 EGRGYVLRRLLRRAVRYAKKLNMNRPFMYELVPVVGEVMKDFYPEVLEKKDFIAKVVKNE 358 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 359 EERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPVELTEEYAEEAGMT- 417 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 VDHAGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG----------- 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D+G Sbjct: 465 ------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADSG 512 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + DG+++ + DVQK G +H +VE G+L + ++ ID +NR + NH+ATHL Sbjct: 513 YLLTDGVKVLVKDVQKAPNGQNLHKVVVEEGVLTKDATVKAVIDTKNRSSIVKNHTATHL 572 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 573 LHQALKDVLGTHVNQAGSLVTAERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEIS 632 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV+ Sbjct: 633 QKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIVA 687 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 688 ESGIGAGTRRIEAVTGKAAYELMNDQVSLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ- 746 Query: 773 IHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 L + ++ + D +N ++ ++ D L+++MD L+ K++S +I Sbjct: 747 -KENESLAAKLSNIEAGNLTDAVVSVDGINVLATKVNVADMNNLRTMMDDLKNKLESAVI 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLAAVN-DDKVNILAGVTKDLVGQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 D+A+A V ++K Sbjct: 864 VDEALAFVQEYVK 876 >gi|229019610|ref|ZP_04176423.1| Alanyl-tRNA synthetase [Bacillus cereus AH1273] gi|229025848|ref|ZP_04182246.1| Alanyl-tRNA synthetase [Bacillus cereus AH1272] gi|228735459|gb|EEL86056.1| Alanyl-tRNA synthetase [Bacillus cereus AH1272] gi|228741690|gb|EEL91877.1| Alanyl-tRNA synthetase [Bacillus cereus AH1273] Length = 880 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 356/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLTDGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGMHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GGYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L +S + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVS-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|324328292|gb|ADY23552.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 880 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 356/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTAVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYADSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K+QS ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLQSAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|47093426|ref|ZP_00231191.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858] gi|226224105|ref|YP_002758212.1| alanyl-tRNA synthetase [Listeria monocytogenes Clip81459] gi|254824437|ref|ZP_05229438.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-194] gi|254852128|ref|ZP_05241476.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-503] gi|300764830|ref|ZP_07074820.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N1-017] gi|47018205|gb|EAL08973.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858] gi|225876567|emb|CAS05276.1| alanyl-tRNA synthetase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605431|gb|EEW18039.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-503] gi|293593673|gb|EFG01434.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-194] gi|300514506|gb|EFK41563.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N1-017] gi|328465542|gb|EGF36771.1| alanyl-tRNA synthetase [Listeria monocytogenes 1816] Length = 879 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 365/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +VEE +G + +V+F +TPFY Sbjct: 464 S----------------------TEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 ++ + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 +D + K GI++L + +K + V E + ++A L + A GG GGGR Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ+GG N + A+ V++++K+ Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876 >gi|30022464|ref|NP_834095.1| alanyl-tRNA synthetase [Bacillus cereus ATCC 14579] gi|206969900|ref|ZP_03230854.1| alanyl-tRNA synthetase [Bacillus cereus AH1134] gi|229081653|ref|ZP_04214148.1| Alanyl-tRNA synthetase [Bacillus cereus Rock4-2] gi|229111861|ref|ZP_04241407.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-15] gi|229129669|ref|ZP_04258637.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-Cer4] gi|229180664|ref|ZP_04308004.1| Alanyl-tRNA synthetase [Bacillus cereus 172560W] gi|296504879|ref|YP_003666579.1| alanyl-tRNA synthetase [Bacillus thuringiensis BMB171] gi|33301672|sp|Q817Z0|SYA_BACCR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29898022|gb|AAP11296.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 14579] gi|206735588|gb|EDZ52756.1| alanyl-tRNA synthetase [Bacillus cereus AH1134] gi|228602809|gb|EEK60290.1| Alanyl-tRNA synthetase [Bacillus cereus 172560W] gi|228653786|gb|EEL09656.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-Cer4] gi|228671617|gb|EEL26915.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-15] gi|228701657|gb|EEL54148.1| Alanyl-tRNA synthetase [Bacillus cereus Rock4-2] gi|296325931|gb|ADH08859.1| alanyl-tRNA synthetase [Bacillus thuringiensis BMB171] Length = 880 Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|229192600|ref|ZP_04319561.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 10876] gi|228590907|gb|EEK48765.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 10876] Length = 880 Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVAAESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|86608988|ref|YP_477750.1| alanyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)] gi|123751690|sp|Q2JLC4|SYA_SYNJB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|86557530|gb|ABD02487.1| alanyl-tRNA synthetase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 884 Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust. Identities = 356/907 (39%), Positives = 525/907 (57%), Gaps = 66/907 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 ++IR TFL+F+ + GH++LPS+SL+P DPT++ T +GM+PFK IF GQ P Y VTT Sbjct: 8 AAIRQTFLDFYAQRGHQVLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRDPEYPRVTTA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F L R Sbjct: 67 QKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAWAWELVTEVFGLPPER 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ EDEEAF LW+ G+ A +I R+ DNFW+ TGPCGPCSEI++D + Sbjct: 123 LVVSVFREDEEAFALWRDEIGIPAHRIQRMGEADNFWAAGPTGPCGPCSEIYYDFKPEL- 181 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R++EI+NLVFM+ + ++ L K +IDTG+GLER+A VLQ NNY Sbjct: 182 GDERIDLEDDSRFLEIYNLVFMELNRDSEGHLMPLAKQNIDTGLGLERLAQVLQGVPNNY 241 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +IQ + + G+ Y N ++ +VI DH R+ LIADG+LP+N RGYVL Sbjct: 242 ETDLIFPIIQTAAGIAGLNYSKANPEQQISLKVIGDHARAVMHLIADGVLPSNVDRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG EP + ++ +AYP++ + + LI+ L+ E+E+F KT Sbjct: 302 RRLIRRMVRHGRLLGIGEPFTIPVIETAIQLAEAAYPQVRERETLIKTELQREEEQFLKT 361 Query: 362 LDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 L+RG LL + + + + ++G AFKL+DT+G PL++ Q+I G + +D Sbjct: 362 LERGERLLLDLFTAVESSRRDSSSPKQISGADAFKLFDTYGFPLELTQEIAQEHGFS-VD 420 Query: 415 IISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 + F Q +E+QR RARA ++ L T + L + T+F+GY Sbjct: 421 LEGFEQEMEKQRQRARAAHQTIDL---TAQGSLDELADFLSQTEFLGYS----------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + +V+A++ +G+ V + +GQ V+VV D+TPFYAEAGGQ+GD G Sbjct: 467 ------------QSSARGVVEALLVEGKSVPQVEAGQAVQVVLDRTPFYAEAGGQIGDRG 514 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 GDG+ ++I DVQK+ + +FVH VERGILR + ID RR+ +H+ATHL Sbjct: 515 YLSGDGLLVRIEDVQKQGD-LFVHFGRVERGILRVGDPVQAQIDLACRRRAQAHHTATHL 573 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL I+ + Q GS + D LRFD T S+P+T EL+ IE+ VN IA+ Sbjct: 574 LQAALKRIVDPSIGQAGSLVAFDRLRFDFTLSRPVTPEELEQIENLVNTWIAEAHAAQVA 633 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM +A A GA A+ G KY VRV+ GV S LCGGTHV++T EI L I++ Sbjct: 634 IMPLAEAKARGAVAMFGEKYGAEVRVIDFP----GV-SMELCGGTHVNNTAEIGLFKIIA 688 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 E+ + AGIRRIEA+ G +L +D ++ L++ K + RV + E + Q Sbjct: 689 ETGVAAGIRRIEAVAGPAVLEYLNERDRVVRELSAQFKAKPQELPERVAALQAELKAAQK 748 Query: 772 -LIHAKRKLQ-LNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 L + +L L E L +AD+ + + + LK+ + L K+ G ++L Sbjct: 749 ELEEVRSQLALLQAEGLLAQAVAVADLKVLVAELGSTTPEALKTAAEHLLHKLGEGAVVL 808 Query: 828 VGISKEKKASVLIVVTEDL----LDRFNAV-DLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + + K S++ + + L + + ++A+L+ GGRP++AQ+GG Sbjct: 809 GSVPEAGKVSLVAAFSPAVQQLGLKAGSFIGEIAKLTGGGG-----GGRPNLAQAGGKQP 863 Query: 883 NKADQAI 889 K +A+ Sbjct: 864 EKLAEAL 870 >gi|47566576|ref|ZP_00237398.1| alanyl-tRNA synthetase [Bacillus cereus G9241] gi|47556606|gb|EAL14938.1| alanyl-tRNA synthetase [Bacillus cereus G9241] Length = 880 Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust. Identities = 356/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ E K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVNDE-KVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|313623696|gb|EFR93847.1| alanyl-tRNA synthetase [Listeria innocua FSL J1-023] Length = 879 Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust. Identities = 363/924 (39%), Positives = 530/924 (57%), Gaps = 74/924 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 +D+G E P PG E ERY+EIWNLVF QF LPK +IDTGMGL Sbjct: 174 YDRGPAFGDDESDPELYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGL 231 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ERM +++Q+ N++ DLF +I+ EQ++G+KY N V +VI DH+R+ +F I D Sbjct: 232 ERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGD 291 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I+ Sbjct: 292 GALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQADFIQ 351 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +TL+ GL +L+ +L + + ++ + G FKLYDT G P+++ ++ Sbjct: 352 KVIRTEEERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTEEYAE 411 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 GL +D F ++EQR RAR+ + S + ++ +L +K ++F+GY+ Sbjct: 412 DHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTDK---SEFVGYNT--- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T VS I+ ++Q +V+E SG + +V+F +TPFYAE+G Sbjct: 465 -------------------TEHVSEIL-YLIQDDTLVDEVASGSEAQVIFKETPFYAESG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR+ Sbjct: 505 GQVADKGTIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIK 564 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + Sbjct: 565 NHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWE 624 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + VV M +A GA AL G KY D VRVV V G +S LCGG HV +T +I Sbjct: 625 QINVVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADI 679 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK + +VE++ Sbjct: 680 GLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQLQA 739 Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDA 815 + R++ KR+ + + L+ AD V ++ ++ D +L+ +D Sbjct: 740 DLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDN 794 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 + K G+++L G + K +++ V+ED + ++A L + A GG GGGRP M Sbjct: 795 WKDKKIGGVLVL-GAVQGDKVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDM 852 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ+GG N + A+ V++++K+ Sbjct: 853 AQAGGKNPAELGTALDYVSTWVKE 876 >gi|229146959|ref|ZP_04275323.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST24] gi|228636558|gb|EEK93024.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST24] Length = 880 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLITQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|212638588|ref|YP_002315108.1| alanyl-tRNA synthetase [Anoxybacillus flavithermus WK1] gi|212560068|gb|ACJ33123.1| Alanyl-tRNA synthetase [Anoxybacillus flavithermus WK1] Length = 877 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 371/916 (40%), Positives = 536/916 (58%), Gaps = 70/916 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SLIP +DP+L++ NSG+ K F G+ P + Sbjct: 7 AQVRQMFLDFFKEKGHAVEPSASLIPIDDPSLLWINSGVATLKKYFDGRVIPDNPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT E D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +T++ EDEEAF +W GL ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 NRLSVTIHPEDEEAFDIWHNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEQ 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E ERY+E+WNLVF QF LPK +IDTGMGLERM ++L Sbjct: 180 F-GNDPNDPELYPGGENERYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q+ N+D DLF +I+A+EQ++G Y + V +VI DH+R+ +F I DG LP+NE Sbjct: 239 QDVPTNFDTDLFMPIIRATEQISGETYRTDAEKDVAFKVIADHIRTVTFAIGDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ YA+ L P M L+P + M YPE+ + I++ +++E+ Sbjct: 299 GRGYVLRRLLRRAVRYAKQLNIQRPFMYELVPVVGEIMVDYYPEVKEKASFIQKVIKNEE 358 Query: 356 ERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL-- 410 ERF +TL+ GL +L V+ G D I DV F+LYDT+G P+++ ++ G+ Sbjct: 359 ERFHETLNEGLAILASVIEKEKQRGSDTISGEDV-FRLYDTYGFPVELTEEYAEEEGMKV 417 Query: 411 --AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 AG + Q + +R S+ + G I K +T F+GYD L Sbjct: 418 DHAGFEREMERQRERARAARQDVDSMQVQGGVLGDI------KVEST-FVGYDQL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +SS+V+ IV+ G++V E GQ+ +V+ +TPFYAE+GGQ+ Sbjct: 466 ------------------SISSVVEVIVKDGQLVNEVSEGQEAQVILRETPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G G+ + + DVQK G +HH +VE+G+++T + + +D R + NH+ Sbjct: 508 ADRGWIEGETGKAYVKDVQKAPNGQHLHHIVVEQGVIQTNGTYIAHVDEAARVDIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I +NL Sbjct: 568 ATHLLHQALKDVLGVHVNQAGSLVAPDRLRFDFTHFGQVKQEELEQIEAIVNEQIWRNLS 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V ++A A GA AL G KY D VRVV V G +S LCGG HV++T EI L Sbjct: 628 VAIEYKPLDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q LK +A LK + +V+ R++ + + R Sbjct: 683 KIVSESGIGAGTRRIEAVTGKAAYRLMNDQIALLKEVAEKLKTNPKDVLTRIDTLMNDMR 742 Query: 769 KLQLIH---AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822 +LQ + A R + E+L +++ +VN + + S+V D L++++D L++K+ S Sbjct: 743 ELQRENESLAARLSHMEAENL-VNQVKEVNGVPLVTSKVNNADMNSLRAMVDDLKQKLGS 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 II+L + ++ K +++ VT DL+DR ++A L + A GGGGGGR MAQ+GG + Sbjct: 802 AIIVLASV-QQNKVNLIAGVTNDLIDRGYHAGKLIKEVATRC-GGGGGGRADMAQAGGKD 859 Query: 882 GNKADQAIAGVASFLK 897 NK D+A+ V ++K Sbjct: 860 ANKVDEALKFVEQWVK 875 >gi|290893863|ref|ZP_06556841.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-071] gi|290556580|gb|EFD90116.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-071] Length = 879 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 365/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKMLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +VEE +G + +V+F +TPFY Sbjct: 464 S----------------------TEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 ++ + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 +D + K GI++L + +K + V E + ++A L + A GG GGGR Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ+GG N + A+ V++++K+ Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876 >gi|228960660|ref|ZP_04122305.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799024|gb|EEM45996.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 880 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|317133026|ref|YP_004092340.1| alanyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3] gi|315471005|gb|ADU27609.1| alanyl-tRNA synthetase [Ethanoligenens harbinense YUAN-3] Length = 874 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/905 (39%), Positives = 525/905 (58%), Gaps = 47/905 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R +L FF+ GH LPS L+P D +L+ NSGM P K F GQ P + V Sbjct: 4 TGLNELREKYLAFFESKGHLRLPSFPLVPQGDNSLLLINSGMAPMKKYFLGQVTPPSKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKCVR D+++VG+ +RH T+FEMLGNFSFG YFK A W+ +TK L Sbjct: 64 TTCQKCVRT----PDIEHVGKDDRHGTYFEMLGNFSFGDYFKHEACAWGWEFVTKVVKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + ++Y+T+Y +D+EAF +W K G+ I+R+ DNFW +GPCGPCSEI+FD+GE Sbjct: 120 EDKVYVTIYLDDDEAFDIWTKEVGVDPSHIVRLGKEDNFWEHG-SGPCGPCSEIYFDRGE 178 Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P G + +RY+E WN+VF Q++ K + K +IDTGMGLER+A V+Q+ Sbjct: 179 EHGCGKPTCGVGCDCDRYVEFWNIVFSQYDSDGKGTYTPMAKPNIDTGMGLERLACVMQD 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N +++D +++++ + ++ G+ Y + ++ RVI DH+RS+ FL+ DG+LP+NEGR Sbjct: 239 VNNLFEVDTVQNIMKHTGRIAGVTYGEDAKADISLRVITDHIRSTVFLVGDGVLPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG EP + + + E +AYP+L++ + I+ +++E+ER Sbjct: 299 GYVLRRLLRRAARHGRLLGIREPFLYQVAETVVHENAAAYPDLVEKQSYIQSVIKAEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F T+D+GL LL+ ++ L +L+GD AFKLYDT G PLD+ DIL RG + +D Sbjct: 359 FAATIDQGLQLLEQRIAALPAGGVLSGDDAFKLYDTFGFPLDLTSDILEERGFS-VDADG 417 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + ++EQR+RARA E S E T+F+GY+ K+ C Sbjct: 418 FEKRMKEQRARARAARAAGMGAAWED---SKDEDTPETRFVGYE------------KLSC 462 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++ V AI+ +GE V A G V VV D TPFYAE+GGQ+GDTG Sbjct: 463 -----------AAKVAAIITEGERVGLADQGSTVSVVLDTTPFYAESGGQVGDTGLLTAA 511 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G+ +Q+TD +K G F+H V G L ++ +D RR + NHSA HLL AL Sbjct: 512 GVCVQVTDCRKSPTGRFLHIGKVVEGSLSAGETMQAQVDAPRRRAVMRNHSAAHLLQAAL 571 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++LG+HV Q G + +RFD TH +T+ EL ++E VN I LPVVTR M E Sbjct: 572 RSVLGTHVQQAGQLVNDRHVRFDFTHFAALTADELAAVEKEVNTAILSALPVVTRTMAVE 631 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL KY D VRVV + G S LCGGTHV +TG+I L IVSE+S+ Sbjct: 632 EAKKTGAMALFSEKYGDVVRVVQM-----GDVSKELCGGTHVDNTGKIGLFRIVSETSVS 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-KLQLIHAK 776 AG+RRIEA+TG L GQD +K A LK + + R ++ E R K ++I Sbjct: 687 AGVRRIEAVTGTNVLELLRGQDIAIKEAAQVLKAAPAELPQRAAQVAGELREKDRVIETL 746 Query: 777 R----KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 R +Q++ + ++ ++ + E+D L+ + D +++ +I+L G++ Sbjct: 747 RGRIAAMQMDALLAAAKEVGVFRLITASLKEMDVDGLRMITDRVRESDPQAVIVLAGMAG 806 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K E + + +A +L R +AK+ GGGGGGRP A +GG + ++ +A+ V Sbjct: 807 GKVVFAAACGKEAVKNGAHAGNLLRTAAKIT-GGGGGGRPDSATAGGRDASRVAEALQSV 865 Query: 893 ASFLK 897 + L+ Sbjct: 866 EAGLE 870 >gi|152991942|ref|YP_001357663.1| alanyl-tRNA synthetase [Sulfurovum sp. NBC37-1] gi|205830233|sp|A6Q747|SYA_SULNB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151423803|dbj|BAF71306.1| alanyl-tRNA synthetase [Sulfurovum sp. NBC37-1] Length = 857 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 361/905 (39%), Positives = 532/905 (58%), Gaps = 73/905 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTVQ 65 IR TFL++FQ GH+L+PSS L+P +DPTLMFTN+GMV FKNIFTG+ P T+ Q Sbjct: 3 IRKTFLDYFQSKGHKLVPSSPLVP-DDPTLMFTNAGMVQFKNIFTGEAPIPNPPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQR 123 C+RAGGKHNDLDNVG T RHHT FEMLGNFSF YFKE AI AW+ +T E DL Sbjct: 62 TCLRAGGKHNDLDNVGYTARHHTLFEMLGNFSFADYFKEDAIAYAWEFVTDEKYLDLPVE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG--- 180 ++++TV+D D+EA+ +WKK +S D+I+R DNFW M +TGPCGPCSEIF+DQG Sbjct: 122 KIWVTVHDSDDEAYDIWKKY--ISEDRIMRFGDKDNFWQMGDTGPCGPCSEIFYDQGAEH 179 Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 E + GG EG+R++EIWNLVFMQ+E+ K LPK SIDTGMGLER+ + Sbjct: 180 FHSEEDVMGG------EGDRFLEIWNLVFMQYERDEKGTLNPLPKPSIDTGMGLERVVAI 233 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPAN 294 + NNY LF ++ ++ G Y+ N ++RVI DHLRS SFL+A G+ Sbjct: 234 KEGVFNNYHSSLFMPFLEKIGELVGKPYDFDAPNSASYRVIADHLRSVSFLLAQGVNFDK 293 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRIMRRA+ + LLG EP M L+ L MG Y L I+ +++ E Sbjct: 294 EGRGYVLRRIMRRAIRHGYLLGLREPFMYKLVDTLVDLMGKQYDYLASRAEAIKTSMKME 353 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF +T++ G+ L + L + ++ NG+VAFKLYDT G PLD+ +D+L + + +D Sbjct: 354 EERFFETIEAGIKLFNEELKNT--QDVFNGEVAFKLYDTFGFPLDLTEDMLREKNIR-LD 410 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 I +FN+ +E Q+++++A+ G G T + LKE++ +F+GY+ Sbjct: 411 IDAFNKKMEAQKAQSKANWKGTGDAATTGDFKLLKEEFNTNEFVGYE------------- 457 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC- 533 T V++ V A++ + +A++G K V+ ++TPFYAE+GGQ+GD G Sbjct: 458 ----------TQEVTTKVLALLDENFKKTDAING-KGWVLLEKTPFYAESGGQVGDKGKL 506 Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQLSINHSATH 591 + + +++ D +K F+ + E G L + +D +R ++ +HSATH Sbjct: 507 EIRNEKLEIRVLDTKK-----FLDMNLSEVEGKLSVGDEVKAVVD-PSRVEIEKHHSATH 560 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH L ILG H++Q GS LRFD +H K +T+ E++ +E VND I++ +P T Sbjct: 561 LLHAGLRAILGDHIAQAGSLNDDKRLRFDFSHPKAMTAEEIEKVEAWVNDKISRAIPRKT 620 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM+ ++A +GA AL G KY + VRVVS+ G S LCGGTHV +T +I L I Sbjct: 621 EIMSVDEAKKAGAMALFGEKYGNEVRVVSM-----GDASIELCGGTHVDNTAQIGLFMIT 675 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 ES + AG+RRIEAI G+ A + E+L + +V N + + ++ E+ + L+ Sbjct: 676 KESGVSAGVRRIEAICGRAAVEKVKALREELSQIKE--EVKNQNPIAGIAKLKEQIKTLK 733 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 + + ++LS + ++ I+ EV + ++KS++D ++ K + +ML Sbjct: 734 -SEVASAMSASQKELSTVNVNG---VNVIVEEVQTGDIKSMIDDVKNKYDNVAVMLF--- 786 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 +KK +++ A D + A ++ GGGGGGRP AQ+GG + ++ A+ Sbjct: 787 -QKKGDKVLLAAGSKNTPIKAGDWIKAIAPIV-GGGGGGRPDFAQAGGKDASRITTALEE 844 Query: 892 VASFL 896 +L Sbjct: 845 AKVYL 849 >gi|218231748|ref|YP_002369198.1| alanyl-tRNA synthetase [Bacillus cereus B4264] gi|218159705|gb|ACK59697.1| alanine--tRNA ligase [Bacillus cereus B4264] Length = 880 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAVKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|301055897|ref|YP_003794108.1| alanyl-tRNA synthetase [Bacillus anthracis CI] gi|300378066|gb|ADK06970.1| alanyl-tRNA synthetase [Bacillus cereus biovar anthracis str. CI] Length = 880 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G+L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGMLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|229158004|ref|ZP_04286075.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 4342] gi|228625457|gb|EEK82213.1| Alanyl-tRNA synthetase [Bacillus cereus ATCC 4342] Length = 880 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|225181972|ref|ZP_03735405.1| alanyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1] gi|225167334|gb|EEG76152.1| alanyl-tRNA synthetase [Dethiobacter alkaliphilus AHT 1] Length = 872 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 365/902 (40%), Positives = 524/902 (58%), Gaps = 50/902 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+TFLEFF+ H +LPS SLIP NDPTL+ +GM P K FTG++ P V T QK Sbjct: 6 IRSTFLEFFKGKEHLVLPSFSLIPQNDPTLLMVGAGMAPLKPYFTGEKTPPKPRVATCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR D++ VGRT+RH TFFEMLGNFSFG YFKE AI AW+L+T + L + +LY Sbjct: 66 CVRT----PDIERVGRTSRHATFFEMLGNFSFGDYFKEEAILWAWELVTTGYKLPEDKLY 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++VY +D+EA+ +W K G++ ++I R+ DNFW + + GPCGPCSEI++D G G Sbjct: 122 VSVYLDDDEAYDIWHKKVGIAPERIFRLGKEDNFWEIGQ-GPCGPCSEIYYDLGADRGCG 180 Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P + E G +R++E+WNLVF QF E L + +IDTG GLER+A VLQ N Sbjct: 181 RP-NCEVGCDCDRFLEVWNLVFTQFNCTESGEYVPLTQKNIDTGAGLERLAVVLQGVNNL 239 Query: 244 YDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ID + L+ +VT +Y + + R+I +HLR SF++ DGILP NEGRGYVL Sbjct: 240 FEIDTVRPLLDHFSKVTKTEYGKDQEKDTSLRIITEHLRGISFMVGDGILPGNEGRGYVL 299 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RRA+ + ++LG EP + + + + E G YPEL + + I++ +R E+ERF +T Sbjct: 300 RRLLRRAVRHGKILGVGEPFLHNAVNLVVDEYGEFYPELAKGREYIQKVVRLEEERFHET 359 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L++G+ +LD ++ G +L GD AFKLYDT+G P+D+ ++IL L +D + +A Sbjct: 360 LEQGMKILDELMHKAGPRGVLPGDAAFKLYDTYGFPIDLTKEILAENKLI-LDEEGYQEA 418 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 LE QR RAR+ G + + SL++ T+F GYD L Sbjct: 419 LEAQRERARSARGASVFGKDDTDYESLRQL--TTEFTGYDSLE----------------- 459 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 V AI++ G+ G + EVV TPFY E GGQ GDTG I DG + Sbjct: 460 ------AEGEVLAILKDGQPASAVSEGDEAEVVLSVTPFYGERGGQAGDTGIIITDGGTM 513 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++TD +H +++G + + + R + NH+ATHL+H AL +L Sbjct: 514 EVTDTVMTPFEQVIHRGSIKQGTVSVGDAAKGKVFAPGRSSICRNHTATHLIHTALQEVL 573 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV Q GS +TPD LRFD T+ T +L +E VN+ I N PV + + ++A Sbjct: 574 GEHVKQAGSLVTPDRLRFDFTNLSAATPEQLAEVEQKVNEKIWANEPVSVTLASLDEAKD 633 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL KY D VR+V V G +S LCGGTHV S GEI LL IVSE+ I AG+R Sbjct: 634 MGATALFDEKYGDAVRIVRV-----GDYSMELCGGTHVQSAGEIGLLKIVSEAGIGAGMR 688 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+TG A +++ L+ A+ LK S + R+ + E++ LQ + + +L+L Sbjct: 689 RIEALTGAAAYRWFAQRNQLLEQCAAQLKSSPEQLPERISGLQAEFKDLQREYQRLQLKL 748 Query: 782 ---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 V+ L + + V +S +S + + L+ + D L+ K+ SGII+L G + E K Sbjct: 749 AGMEVDGLLSEVSQKSGVPVLSARVSAGNMETLREMADRLKNKLGSGIIIL-GAAAEGKV 807 Query: 837 SVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ VT DL+ ++A L AK L GGGGGGRP MAQ+GG + +K + A+ V S Sbjct: 808 LLVGAVTNDLVKAGYHAGKLVGEVAK-LTGGGGGGRPDMAQAGGKDPDKLESALEKVDSL 866 Query: 896 LK 897 ++ Sbjct: 867 VE 868 >gi|255284141|ref|ZP_05348696.1| alanine--tRNA ligase [Bryantella formatexigens DSM 14469] gi|255265315|gb|EET58520.1| alanine--tRNA ligase [Bryantella formatexigens DSM 14469] Length = 879 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 365/911 (40%), Positives = 523/911 (57%), Gaps = 58/911 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FL+FFQ GH + S SL+P ND +L+ NSGM P K FTG E P + VTT Sbjct: 6 VNELRKMFLDFFQSKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVVGLDAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY ED+EAF +W K G+ A++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLEDDEAFDIWNKEVGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + + +RYIE+WN VF QFE L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYIEVWNNVFTQFENDGNGNYTELQQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D + L + +Y+ + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 241 SIFDVDTIEALRNKVCEFAHTEYKTDEKKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + + L + YPEL + K I + L E+++F Sbjct: 301 VLRRLIRRAARHGRLLGISGKFLSELSATVIEGSKDGYPELEEKKDFIFKVLTQEEDKFN 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L G+ S + + + L G AF LYDT+G PLD+ ++IL +G ID Sbjct: 361 KTIDQGLSILSGMESKMEAEGVKTLAGRDAFTLYDTYGFPLDLTKEILEEKGYT-IDEEG 419 Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F A+EEQR++AR + +G + ++I S+ T+F+GYD L Sbjct: 420 FKAAMEEQRTKARNAREVTNYMGADATVYDEIDPSV-----TTEFVGYDKLE-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S + + + EI E G+ + +QTPFYA GGQ GDTG Sbjct: 467 ---------------YTSKITVLTTEKEITEAVSDGENATIFVEQTPFYATMGGQEGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D K G H V +G+ + + L++ + R NHSATHL Sbjct: 512 VIRTADAEFEVEDTIKLLGGKVGHVGRVTKGMFKVGDEVTLSVSPKKRADTCKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LG+HV Q GS +TPD LRFD H P+T+ E+ E VN+ IA +LPVVT+ Sbjct: 572 LQKALKTVLGAHVEQKGSLVTPDRLRFDFAHFAPMTAEEIAKTEALVNEQIAASLPVVTQ 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IMN E+A +GA AL G KY D VRVVS+ G S LCGGTHVS+TG I IVS Sbjct: 632 IMNIEEAKKTGAMALFGEKYADDVRVVSM-----GDFSKELCGGTHVSNTGMITTFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG+RRIEA+TG ++ +++L A +K + ++ R+ + EE + Q Sbjct: 687 ESGIAAGVRRIEALTGDGVFAYYHNLEQQLAEAAKAVKATPATLLDRLHHLTEELKAAQS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K +L + L + ++ V ++ + VD L+ + D L++K+ G+I+L Sbjct: 747 EVESLKSRLAKDALGDVMDNVKEVKGVKLLAAKLEGVDMNGLRDLGDQLKEKLGDGVIVL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++ + K S+L + T+ + +A +L + A ++ GGGGGGRP+MAQ+GG N + Sbjct: 807 ASVN-DGKVSLLSMATDGAQKQGAHAGNLIKGIAALV-GGGGGGRPNMAQAGGKNPAGVE 864 Query: 887 QAIAGVASFLK 897 A+A A L+ Sbjct: 865 DALAKAAEVLE 875 >gi|229824851|ref|ZP_04450920.1| hypothetical protein GCWU000182_00200 [Abiotrophia defectiva ATCC 49176] gi|229790854|gb|EEP26968.1| hypothetical protein GCWU000182_00200 [Abiotrophia defectiva ATCC 49176] Length = 888 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 360/913 (39%), Positives = 526/913 (57%), Gaps = 52/913 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+K GH + S SL+P ND +L+ NSGM P K FTGQE P + V T Sbjct: 6 VNELRRMFLEFFEKKGHLKMNSFSLVPHNDNSLLIINSGMAPLKPYFTGQEIPPSKRVCT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D+DNVG+T RH TFFEMLGNFSFG YFKE AI AW+ LT+ + Sbjct: 66 CQKCIRTG----DIDNVGKTARHGTFFEMLGNFSFGDYFKEEAIPWAWEFLTETVGIPAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D EAF++W K +SA++I + DNFW +GPCGPC+EI+FD+GE Sbjct: 122 RLYPSVYVDDNEAFEIWNKKMNISAERIFKFGKEDNFWEHG-SGPCGPCTEIYFDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + + +RY+E+WN+VF QF+ K L + +IDTGMGLER+A +Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNVVFSQFDNDGKGNYSDLEQKNIDTGMGLERLAVAVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D L ++ KY+ N N ++ RVI DH+RS++F+I+DGI+P+NEGRGY Sbjct: 241 SIFDVDTLLALRNKVCEIADKKYKDNEKNDISIRVITDHIRSATFMISDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA + +LLG ++ L A+ YPEL + + I + E+E+F Sbjct: 301 VLRRIIRRADRHGKLLGIDGAFLVGLAKAVIAGSKDGYPELAEKQDFILNVIEQEEEKFE 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+++GL +L+G+ + + ++G+ AFKLYDT+G P+D+ ++IL +G+ ID + Sbjct: 361 KTINQGLEILEGIQKDMEAKGVKTMSGEDAFKLYDTYGFPIDLTKEILEEKGM-DIDEEA 419 Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F QA++ Q+ AR +G + E+I ++ ++FIGYD Sbjct: 420 FKQAMKVQKDTARNARKTTSYMGADATIYEQIDPAIN-----SEFIGYD----------- 463 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 K + + L VS + ++ I E G V+ D TPFYA GGQLGD G Sbjct: 464 -KTEAEGKIVAL---VSVGSEEDGEESAISEALTDGMTGAVITDVTPFYATKGGQLGDIG 519 Query: 533 C-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 +GD + ++ D A H V +G+ + + L +D +NR NHSATH Sbjct: 520 VITVGDAV-FEVKDTIPVAGSKIAHIGKVIKGMFKIGDKVTLKVDAENRMATCRNHSATH 578 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG+HV Q+GS RFD +H K +T E+K++E VN+ IA+++PV T Sbjct: 579 LLQKALREVLGTHVEQSGSYQDAGRTRFDFSHFKAMTPEEIKAVEKLVNEKIAESIPVDT 638 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 ++M+ E+A SGA AL G KY D VRVV + G S CGGTHV +TG I I+ Sbjct: 639 KVMSIEEAKKSGAMALFGEKYGDEVRVVGM-----GDFSKEFCGGTHVKNTGMIGQFKII 693 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES + AGIRRIEAITG + + + A LK S +V + + + EE + LQ Sbjct: 694 SESGVAAGIRRIEAITGNNVIKYYENLENTIAEAAKMLKASPDKLVEKAKHLMEELKSLQ 753 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K + E L +I V ++ I + D EL+++ D L+ K+ G+I Sbjct: 754 SENESLKNKAAKEALGDVMDKVVEIGGVKVLAVDIPDTDGNELRNLGDELKNKLGEGLIF 813 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L +K+ K +++ + T+ + +A +L + A ++ GGGGGGRP+MAQ+GG K Sbjct: 814 LAS-AKDGKVNLVAMATDGAVKAGVHAGNLIKTVAPIV-GGGGGGRPNMAQAGGKFSEKK 871 Query: 886 DQAIAGVASFLKK 898 A+ VA +KK Sbjct: 872 ADAVKAVADEVKK 884 >gi|317471795|ref|ZP_07931133.1| alanyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA] gi|316900721|gb|EFV22697.1| alanyl-tRNA synthetase [Anaerostipes sp. 3_2_56FAA] Length = 879 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 353/913 (38%), Positives = 518/913 (56%), Gaps = 76/913 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FL+FF+ H ++ S SL+P ND +L+ N+GM P K FTGQE P V T Sbjct: 6 VNELRKMFLDFFESKDHLVMKSFSLVPQNDKSLLLINAGMAPLKPYFTGQEVPPKTRVAT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF++W+K G++ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+E+WN VF QFE L +IDTGMGLER+A V+QE Sbjct: 181 GCGSPDCTVGCECDRYMEVWNNVFTQFENDGNGNYEELDNKNIDTGMGLERLAVVVQEVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K + ++ G+ Y + N ++ RVI DH+RS+SF+I+DG++P+NEGRGY Sbjct: 241 SIFDVDTIKAIRDRICELAGVTYGADEKNDISIRVITDHIRSASFMISDGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R+LG E + L + E YPEL + + I + L +E+E+F Sbjct: 301 VLRRLIRRAARHGRMLGMKELFLAGLSKTVIAESKDGYPELKEKEEFIYKVLTTEEEQFN 360 Query: 360 KTLDRGLVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D+GL +L + +S GK E L G AFKLYDT+G PLD+ ++IL +G++ +D Sbjct: 361 RTIDQGLQILADMEEAMSREGKKE-LAGKDAFKLYDTYGFPLDLTKEILEEKGIS-VDET 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F +A+E+QR +AR + + + ++F+GYD L Sbjct: 419 GFQKAMEQQRKQAREARETTNYMGADATVYEQLDPAMTSEFVGYDTL------------T 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 C+ S + A+ + + V GQ+ ++ +TPFYA +GGQ D G + Sbjct: 467 CE-----------SEIIAMTTDKNLTDSLVEGQRGTIICSRTPFYATSGGQEADQGVILS 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + DV K + G F H V G L ++L ++ +NRRQ NHSATHLL A Sbjct: 516 ENSSFAVEDVIKLSGGKFGHVGYVNEGNLSVGEKVLLNVNERNRRQTEKNHSATHLLQKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L T+LGSHV Q GS LRFD TH P+TS E+K +ED VN+ IA N PV T++M+ Sbjct: 576 LRTVLGSHVEQAGSSNNAKHLRFDFTHFSPMTSEEIKKVEDIVNEEIAANRPVETKLMSM 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A +GA AL G KY D VRVVS+ G S LCGGTHV++TG I + I+SE+ + Sbjct: 636 DEAKNTGAMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVANTGSITVFKILSETGV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEAIT + + +E+L A +K + ++ R+E + E ++L + Sbjct: 691 AAGVRRIEAITDKAVFEYYEKMEEELMEAAKVVKSTPAKLMARLEALMTELKELHSENES 750 Query: 777 RKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L + L ++ DVN ++ +++VD L+ + D+L++K+ G+I+L Sbjct: 751 LKSKLAKDALGDVMDQVQDVNGVKLLAAKVADVDMNGLRELGDSLKEKLGEGVIVLAS-- 808 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG--------------GRPHMAQS 877 L + V +A A+ G G GRP+MAQ+ Sbjct: 809 -------------SLGGKVFLVAMATDGAQKAGAHAGNLIKGIAGCVGGGGGGRPNMAQA 855 Query: 878 GGPNGNKADQAIA 890 GG D AIA Sbjct: 856 GGKKPEGIDDAIA 868 >gi|303233900|ref|ZP_07320549.1| alanine--tRNA ligase [Finegoldia magna BVS033A4] gi|302494825|gb|EFL54582.1| alanine--tRNA ligase [Finegoldia magna BVS033A4] Length = 873 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 344/907 (37%), Positives = 525/907 (57%), Gaps = 73/907 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL++F + GH ++ S LIP +D +L+ N+GM P K FTG++K T+ Sbjct: 6 LNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKKDRATS 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R D+D VG+T RH TFFEMLGNFSFG YFK AI AWD LT E ++ + Sbjct: 66 SQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNELEVPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-EC 182 L+++VY+EDEEA+ +W G+S ++++++ DNFW + + GPCGPCSEI D+G E Sbjct: 122 ILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVDRGFEF 180 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +EGER++E+WNLVF QF + K ER P +IDTGMGLER+ VL+ Sbjct: 181 DPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHP--NIDTGMGLERITMVLENA 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++I L K +I+ E+++G+KY+ N N V+ R+I DH+R+ +FLI DG++P+NE RG Sbjct: 239 DNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNEQRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + +LLG + + ++ + S YPEL + + I + +E+++F Sbjct: 299 YVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEEKKF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TLD GL +LD +L D + +G+ AFKLYDT+G P+D+ ++ L +D + F Sbjct: 359 QETLDLGLNILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKE-LVGEVNKTVDEVQF 416 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA----TQFIGYDLLRGSKFMKEDRK 474 + +EEQ+ RAR GS + +S +KYG T+F GY+ L+ Sbjct: 417 KKLMEEQKERAR------GSRNESNMGWSSDKKYGEGLPETKFGGYNSLKDES------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 K I GE +GQ +V D T FY E GGQ+GD G Sbjct: 464 ------------------KVIEIYGEDENNLKAGQMGIIVLDCTTFYGEGGGQVGDKGII 505 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D + ++ D +K + +F+H+ V G L + + +D NRR + NHSATHLLH Sbjct: 506 YNDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLH 565 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G HV+Q GS + + LRFD+TH + ++ +L+ +E VND IA +PV M Sbjct: 566 QALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEM 625 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E++ + GA L KY D VRVV + G +S LCGGTHV +T +I +L I+SES Sbjct: 626 SLEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISES 680 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEAITG+ +L +D + ++ LK S + + R+E EE + L Sbjct: 681 SVAAGVRRIEAITGRAVYKYLKERDSLIDNVKRSLKASNEDEITRRIEMNTEEIKGL--- 737 Query: 774 HAKRKLQ-LNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQSG 823 K+KL+ + +DLS + + +N + +S +D+ + + ++ K++ G Sbjct: 738 --KKKLKDITNKDLSSNVDSVINDAVEVNGTKVCTFELSGLDNNSFRDFGENIKSKLEDG 795 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L S E K S + +VT+ + + A D+ R AKV GG GGGR AQ+G + Sbjct: 796 VVILAN-SDESKVSFIALVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDS 853 Query: 883 NKADQAI 889 +K D+A+ Sbjct: 854 SKVDEAL 860 >gi|118479549|ref|YP_896700.1| alanyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam] gi|196034339|ref|ZP_03101748.1| alanyl-tRNA synthetase [Bacillus cereus W] gi|196044886|ref|ZP_03112120.1| alanyl-tRNA synthetase [Bacillus cereus 03BB108] gi|218905583|ref|YP_002453417.1| alanyl-tRNA synthetase [Bacillus cereus AH820] gi|225866370|ref|YP_002751748.1| alanyl-tRNA synthetase [Bacillus cereus 03BB102] gi|205829983|sp|A0RJ00|SYA_BACAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118418774|gb|ABK87193.1| alanyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam] gi|195992881|gb|EDX56840.1| alanyl-tRNA synthetase [Bacillus cereus W] gi|196024374|gb|EDX63047.1| alanyl-tRNA synthetase [Bacillus cereus 03BB108] gi|218536398|gb|ACK88796.1| alanyl-tRNA synthetase [Bacillus cereus AH820] gi|225787137|gb|ACO27354.1| alanine--tRNA ligase [Bacillus cereus 03BB102] Length = 880 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|116872933|ref|YP_849714.1| alanyl-tRNA synthetase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461085|sp|A0AIV3|SYA_LISW6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116741811|emb|CAK20935.1| alanyl-tRNA synthetase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 879 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 364/928 (39%), Positives = 528/928 (56%), Gaps = 82/928 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA +W++ GLS + I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWREKIGLSEEHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPTFGDDTSDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHNQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L K ++F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTAK---SEFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ I+Q +V+E SG+ +V+F +TPFY Sbjct: 464 A----------------------TEHVSEIL-YIIQDDALVDEVASGKTAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKHTANLLKATTKEAPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 ++ + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870 +D + K GI++L + E K +++ V+ED + ++A L + A GG GGG Sbjct: 791 FVDNWKDKKIGGILVLGAVQGE-KVNLISAVSEDAIKAGYHAGKLLKEVATKC-GGNGGG 848 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898 RP MAQ+GG N + A+ V++ +K+ Sbjct: 849 RPDMAQAGGKNPAELATALDYVSTCVKE 876 >gi|300119209|ref|ZP_07056906.1| alanyl-tRNA synthetase [Bacillus cereus SJ1] gi|298723429|gb|EFI64174.1| alanyl-tRNA synthetase [Bacillus cereus SJ1] Length = 880 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHLGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYIK 876 >gi|229152592|ref|ZP_04280781.1| Alanyl-tRNA synthetase [Bacillus cereus m1550] gi|228630853|gb|EEK87493.1| Alanyl-tRNA synthetase [Bacillus cereus m1550] Length = 880 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H ++E G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVIEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAVKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|169824323|ref|YP_001691934.1| alanyl-tRNA synthetase [Finegoldia magna ATCC 29328] gi|205830092|sp|B0S104|SYA_FINM2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167831128|dbj|BAG08044.1| alanyl-tRNA synthetase [Finegoldia magna ATCC 29328] Length = 873 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 344/907 (37%), Positives = 525/907 (57%), Gaps = 73/907 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL++F + GH ++ S LIP +D +L+ N+GM P K FTG++K T+ Sbjct: 6 LNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKKDRATS 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R D+D VG+T RH TFFEMLGNFSFG YFK AI AWD LT E ++ + Sbjct: 66 SQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNELEVPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-EC 182 L+++VY+EDEEA+ +W G+S ++++++ DNFW + + GPCGPCSEI D+G E Sbjct: 122 ILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVDRGFEF 180 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +EGER++E+WNLVF QF + K ER P +IDTGMGLER+ VL+ Sbjct: 181 DPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHP--NIDTGMGLERITMVLENA 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++I L K +I+ E+++G+KY+ N N V+ R+I DH+R+ +FLI DG++P+NE RG Sbjct: 239 DNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNEQRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + +LLG + + ++ + S YPEL + + I + +E+++F Sbjct: 299 YVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEEKKF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TLD GL +LD +L D + +G+ AFKLYDT+G P+D+ ++ L +D + F Sbjct: 359 QETLDLGLNILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKE-LVGEVNKTVDEVQF 416 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA----TQFIGYDLLRGSKFMKEDRK 474 + +EEQ+ RAR GS + +S +KYG T+F GY+ L+ Sbjct: 417 KKLMEEQKERAR------GSRNESNMGWSSDKKYGEELPETKFDGYNSLKDES------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 K I GE +GQ +V D T FY E GGQ+GD G Sbjct: 464 ------------------KVIEIYGEDENNLKAGQMGIIVLDCTTFYGEGGGQVGDKGII 505 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D + ++ D +K + +F+H+ V G L + + +D NRR + NHSATHLLH Sbjct: 506 YNDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLH 565 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G HV+Q GS + + LRFD+TH + ++ +L+ +E VND IA +PV M Sbjct: 566 QALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEM 625 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E++ + GA L KY D VRVV + G +S LCGGTHV +T +I +L I+SES Sbjct: 626 SLEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISES 680 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEAITG+ +L +D + ++ LK S + + R+E EE + L Sbjct: 681 SVAAGVRRIEAITGRAVYKYLKERDRLIDNVKHSLKASNEDEITRRIEMNTEEIKGL--- 737 Query: 774 HAKRKLQ-LNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQSG 823 K+KL+ + +DLS + + +N + +S +D+ + + ++ K++ G Sbjct: 738 --KKKLKDITNKDLSSNVDSVINDAVEVNGTKVCTFELSGLDNNSFRDFGENIKSKLEDG 795 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L S E K S + +VT+ + + A D+ R AKV GG GGGR AQ+G + Sbjct: 796 VVILAN-SDESKVSFIALVTDSSVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDS 853 Query: 883 NKADQAI 889 +K D+A+ Sbjct: 854 SKVDEAL 860 >gi|253578839|ref|ZP_04856110.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849782|gb|EES77741.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 879 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 363/911 (39%), Positives = 522/911 (57%), Gaps = 58/911 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FL+F + GH ++ S SL+P D +L+ N+GM P K FTG E P V+T Sbjct: 6 VNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEIPPRTRVST 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY ED+EAF +W K G+ AD+I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLEDDEAFDIWNKEIGIPADRIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + + +RY+E+WN VF QFE L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D L +++G +YE N + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 241 SIFDVDTICALRNLVCEISGKEYEKNYNDDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + + YPEL + K I + L +E+ +F Sbjct: 301 VLRRLIRRAARHGRLLGIEGTFLAKLSEEVINGSKAGYPELEEKKEFIFKVLTNEENQFN 360 Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + ++ L+G+ AFKLYDT+G P+D+ ++IL +G ID Sbjct: 361 KTIDQGLRILGEMEDEMKAAGEKTLSGENAFKLYDTYGFPMDLTKEILEEKGY-DIDEAG 419 Query: 418 FNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F + +EEQR++AR+ + +G + + I ++ T+F+GYD L Sbjct: 420 FQKCMEEQRNKARSAREVTNYMGADATVYDDIDVNV-----TTEFVGYDHLT-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V + + EIV + GQK V +QTPFYA GGQ+GDTG Sbjct: 467 ---------------FDSKVTVLTTETEIVNSLMEGQKGTVFTEQTPFYATMGGQVGDTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K G F H +E G++ T ++ L +D RR NHSATHL Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGHMESGMISTGETVSLKVDEAARRDTEKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LG+HV Q GS +TPD LRFD H + +T+ E+ +E VN I L V T Sbjct: 572 LQKALKTVLGNHVEQKGSLVTPDRLRFDFAHFQAMTADEIAQVEALVNKEIQAGLEVRTD 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E+A SGA AL G KY+ +VRVVS+ G S LCGGTHV++TG IML IVS Sbjct: 632 VMDVEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSKELCGGTHVANTGNIMLFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG+RRIEA+TG + Q+E L A LK + +V ++ + E + L Sbjct: 687 ESGIAAGVRRIEALTGNGVLEYYKKQEELLHEAAKALKANPAEIVEKIGHLQGEVKALSS 746 Query: 773 IHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K +L +V D ++ V ++ + VD L+ + D L+ K+ G+++ Sbjct: 747 ENESLKSKLAQGALGDVMD-KVVEVKGVKLLAAKVDGVDMNGLRDLGDQLKGKLGEGVVL 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L ++ EK + + +A +L + A ++ GGGGGGRP+MAQ+GG N KA Sbjct: 806 LAAVNGEKVNLLAMATDAAQKAGAHAGNLIKAVAAIV-GGGGGGRPNMAQAGGKNPAKAQ 864 Query: 887 QAIAGVASFLK 897 +A+ A L+ Sbjct: 865 EAVDAAAGILE 875 >gi|228948102|ref|ZP_04110386.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123929|ref|ZP_04253121.1| Alanyl-tRNA synthetase [Bacillus cereus 95/8201] gi|228659231|gb|EEL14879.1| Alanyl-tRNA synthetase [Bacillus cereus 95/8201] gi|228811460|gb|EEM57797.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 880 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADC 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|302380501|ref|ZP_07268966.1| alanine--tRNA ligase [Finegoldia magna ACS-171-V-Col3] gi|302311444|gb|EFK93460.1| alanine--tRNA ligase [Finegoldia magna ACS-171-V-Col3] Length = 873 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 343/907 (37%), Positives = 525/907 (57%), Gaps = 73/907 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL++F + GH ++ S LIP +D +L+ N+GM P K FTG++K T+ Sbjct: 6 LNEIRKKFLDYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKKDRATS 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R D+D VG+T RH TFFEMLGNFSFG YFK AI AWD LT E ++ + Sbjct: 66 SQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWDFLTNELEVPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-EC 182 L+++VY+EDEEA+ +W G+S ++++++ DNFW + + GPCGPCSEI D+G E Sbjct: 122 ILWVSVYEEDEEAYNIWVNEVGISPERVVKLGKADNFWEL-DQGPCGPCSEIHVDRGFEF 180 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +EGER++E+WNLVF QF + K ER P +IDTGMGLER+ VL+ Sbjct: 181 DPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHP--NIDTGMGLERITMVLENA 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++I L K +I+ E+++G+KY+ N N V+ R+I DH+R+ +FLI DG++P+NE RG Sbjct: 239 DNIFEIGLVKDIIKTIEEISGVKYKENHKNDVSIRIIADHVRAMTFLIYDGVIPSNEQRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + +LLG + + ++ + S YPEL + + I + +E+++F Sbjct: 299 YVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEDRDRIVKIANAEEKKF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TLD GL +LD +L D + +G+ AFKLYDT+G P+D+ ++ L +D + F Sbjct: 359 QETLDLGLNILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKE-LVGEVNKTVDEVQF 416 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA----TQFIGYDLLRGSKFMKEDRK 474 + +EEQ+ RAR GS + +S +KYG T+F GY+ L+ Sbjct: 417 KKLMEEQKERAR------GSRNESNMGWSSDKKYGEGLPETKFDGYNSLKDES------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 K I GE +GQ +V D T FY E GGQ+GD G Sbjct: 464 ------------------KVIEIYGEDENNLKAGQMGIIVLDCTTFYGEGGGQVGDKGII 505 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D + ++ D +K + +F+H+ V G L + + +D NRR + NHSATHLLH Sbjct: 506 YNDNFKAEVYDTKKTGKKVFLHYVKVTEGSLHVGDKVTIEVDELNRRDIMKNHSATHLLH 565 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G HV+Q GS + + LRFD+TH + ++ +L+ +E VND IA +PV M Sbjct: 566 QALKDVVGDHVNQAGSYVDGERLRFDITHFEAVSKEQLEKVEQIVNDKIALGIPVKIDEM 625 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E++ + GA L KY D VRVV + G +S LCGGTHV +T +I +L I+SES Sbjct: 626 SLEESQSIGARGLFEDKYQDVVRVVQM-----GDYSIELCGGTHVKTTSDIQMLKIISES 680 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEAITG+ +L +D + ++ LK S + + R+E EE + L Sbjct: 681 SVAAGVRRIEAITGRAVYKYLKERDSLIDNVKHSLKASNEDEITRRIEMNTEEIKGL--- 737 Query: 774 HAKRKLQ-LNVEDLSCHKIADVNFMSHI---------ISEVDSKELKSVMDALQKKIQSG 823 K+KL+ + +DLS + + +N + ++ +D+ + + ++ K++ G Sbjct: 738 --KKKLKDMTNKDLSSNVDSVINDAVEVNGTKVCTFELNGLDNNSFRDFGENIKSKLEDG 795 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L S E K S + +VT+ + + A D+ R AKV GG GGGR AQ+G + Sbjct: 796 VVILAN-SDESKVSFIALVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDS 853 Query: 883 NKADQAI 889 +K D+A+ Sbjct: 854 SKVDEAL 860 >gi|229163337|ref|ZP_04291289.1| Alanyl-tRNA synthetase [Bacillus cereus R309803] gi|228620118|gb|EEK76992.1| Alanyl-tRNA synthetase [Bacillus cereus R309803] Length = 880 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ ED+EAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDDEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRDGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQAGFESEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGMHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNSKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|158320695|ref|YP_001513202.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs] gi|205829976|sp|A8MGI3|SYA_ALKOO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|158140894|gb|ABW19206.1| alanyl-tRNA synthetase [Alkaliphilus oremlandii OhILAs] Length = 880 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 360/912 (39%), Positives = 531/912 (58%), Gaps = 62/912 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ IR FLEFF+ H + PS+ L+P D +L+ NSGM P K F G E+P + + T Sbjct: 6 VNEIRKEFLEFFRSKEHIIHPSAPLVPQKDKSLLLINSGMAPLKPYFAGLEEPPGKRMAT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVGRT RH TFFEMLGNFSFG YFK+ ++ W+ +TK +L Sbjct: 66 CQKCIRTG----DIENVGRTARHATFFEMLGNFSFGDYFKKESLTWGWEFVTKNLELPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181 +L+ TVY +D+EAF++W K GL ++I+R+ DNFW + GPCGPCSEI+FD+GE Sbjct: 122 KLWATVYVDDDEAFEIWNKQIGLPEERIVRLGKADNFWEIG-LGPCGPCSEIYFDRGEDY 180 Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 C PG E +RY+E WN VF QF++ + LP +IDTGMGLERMA Sbjct: 181 GCGCEECKPGC------ECDRYVEFWNHVFTQFDRDEEGNYHPLPNPNIDTGMGLERMAC 234 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293 ++Q + +DID + ++ + ++T +Y+ + V+ R+I DH+RS S +I DGILP+ Sbjct: 235 IMQGVDSIFDIDTMQDILNSVCKITSSEYKKDERTDVSIRIITDHVRSISLMIGDGILPS 294 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA + +LLG + L+ + G Y EL+ K I+ ++ Sbjct: 295 NEGRGYVLRRLLRRAARHGKLLGVNRAFLYELVDRVADNYGETYVELVDNKDYIKRVIKV 354 Query: 354 EDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +T+D+G+ +L+ + L K+ +L+G AFKLYDT+G P D+ ++IL +GL+ Sbjct: 355 EEERFMETIDQGMDILNQYIEELVTLKETVLSGVNAFKLYDTYGFPFDLTKEILEEKGLS 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RAR +G + ++ FS +K T F GY + F E Sbjct: 415 -LDETGFESEMEKQRQRARDARIGADTEGWKEDIFSGLDKEIQTAFKGY-----TNFEVE 468 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + V AIV +VE+ G++ V+ D+T FY E GGQ+GD Sbjct: 469 GK------------------VLAIVSNDTVVEQCDKGKEATVILDETAFYGEGGGQVGDI 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAI-VERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + +RL + D +K VHH + VE G ++ + +D R + NH+AT Sbjct: 511 GTLYNEAVRLSVLDTKKGPHNQ-VHHVVRVEEGTIKIGDEVKAKVDMVTRMSTARNHTAT 569 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL I+G HV Q GS +TPD LRFD TH + +T ++ IE+ VN I L V Sbjct: 570 HLLHKALRDIVGEHVHQAGSLVTPDRLRFDFTHFEGLTKDQITQIEEKVNQQILMALDVR 629 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T + EDA GA AL G KY D VRVV V G +S+ LCGGTHV+++GEI + + Sbjct: 630 TFETSIEDAKKIGAQALFGEKYGDVVRVVKV-----GEYSTELCGGTHVTNSGEIGMFIM 684 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE+ + AG+RRIEAITG A ++ + ++ +A LK NVV RV ++ E ++ Sbjct: 685 LSEAGVAAGVRRIEAITGMEAYKYVQKNQKTIQEIADTLKTQVQNVVERVADLVHETKEK 744 Query: 771 QLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 K K QL + D+ + +N + ++ + +L+ + D L++KI SG+I Sbjct: 745 DREINKLKSQLASNSTGDILDKATVVGGINVVVEVLENQEMDDLRKIGDVLKEKIGSGVI 804 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L G S + K + + + T+D + + +A +L + +AK+ GGGGGGRP MAQ+GG N K Sbjct: 805 VL-GSSNQDKVNFVAMATKDAVSKGVHAGNLVKEAAKI-AGGGGGGRPDMAQAGGKNPQK 862 Query: 885 ADQAIAGVASFL 896 +A+ V L Sbjct: 863 IQEALDTVKEIL 874 >gi|229032038|ref|ZP_04188021.1| Alanyl-tRNA synthetase [Bacillus cereus AH1271] gi|228729283|gb|EEL80277.1| Alanyl-tRNA synthetase [Bacillus cereus AH1271] Length = 880 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQEGFESEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ G+ + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGKYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|229543743|ref|ZP_04432803.1| alanyl-tRNA synthetase [Bacillus coagulans 36D1] gi|229328163|gb|EEN93838.1| alanyl-tRNA synthetase [Bacillus coagulans 36D1] Length = 881 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 375/919 (40%), Positives = 534/919 (58%), Gaps = 72/919 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR+ FL+FF++ GH++ PS+SLIP NDP+L++ NSG+ K F G P + Sbjct: 7 AEIRSMFLDFFKEKGHKVEPSASLIPVNDPSLLWINSGVATLKKYFDGTVIPENPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YF+E AI AW+LLT K F + + Sbjct: 67 QKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAIAWAWELLTSDKWFGMPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D ++ WKKI G+S D II + NFW + E GP GP +EIFFD+GE Sbjct: 123 EKLYVTVYPDDLDSIACWKKI-GVSPDHIIPL--EGNFWEIGE-GPSGPDTEIFFDRGEK 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQ---QNKQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + E LPK +IDTGMGLERMA Sbjct: 179 YDPERLGIRLLQEDMENDRYIEIWNIVLSQFNAIPGVPRSEYPELPKKNIDTGMGLERMA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGIL 291 VLQ NYD DLF +IQ E+++G KY N +VI DH+R+ +F +ADG L Sbjct: 239 CVLQGVDTNYDSDLFMPIIQEVEKISGKKYRAGNKEADTAFKVIADHIRTVAFAVADGAL 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA+ YA L M L+P + M S YPE+ + +++ + Sbjct: 299 PSNEGRGYVLRRLLRRAVRYAIQLDIHGAFMYKLVPTVGRIMNSYYPEVEKNADFVQKVV 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 RSE+ERF +TL+ GL +L+ + K+ E L G+ F LYDT+G P+++ ++ +G Sbjct: 359 RSEEERFQETLNEGLSILEERIRAAKKNGLEQLPGEDIFMLYDTYGFPVELTEEYAHDQG 418 Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L D F + +E QR RAR A S+ + G I ++FIGYD L Sbjct: 419 LRA-DHEGFEKEMERQRERARNARQQAESMSVQGGVLGNITVK-------SEFIGYDHLE 470 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 G+ V +++ G+I E A SG+++ + DQTPFYAE+ Sbjct: 471 GTAH-----------------------VAVLLKDGDITESAASGEEIRFILDQTPFYAES 507 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G +G+++++T+VQK G +H +V G ++T + +D RR Sbjct: 508 GGQIADHGTLTAEGLKVEVTNVQKAPNGQNLHQGVVVSGTIKTGQEVFAQVDGAKRRDTE 567 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV+Q GS + P LRFD +H +T EL+ IE VN+ I Sbjct: 568 KNHSATHLLHQALKDVLGVHVNQAGSLVEPGRLRFDFSHFGQVTEEELEKIETIVNEKIW 627 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +LPV T + ++A A GA AL G KY + VRVV + G +S LCGG HVS+T + Sbjct: 628 ASLPVTTDLKKLDEAKAMGAMALFGEKYGEIVRVVQM-----GDYSLELCGGCHVSNTAQ 682 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L IVSES I AG RRIEA+TG+ A + Q LK ++ LK + R++ + Sbjct: 683 IGLFKIVSESGIGAGTRRIEAVTGKYAYGLMQEQLHLLKEASAKLKAKPTELPDRIDALQ 742 Query: 765 EEYRKLQLIHAKRKLQL-NVEDLSC---HKIAD-VNFMSHIISEVDSKELKSVMDALQKK 819 +E ++ Q +A +L N+E S K+ D +N ++ + D +L+++ D L++K Sbjct: 743 QELKEAQRENASLAAKLANIEAGSLVDRVKVVDGINVLAAKVEAGDMNQLRNMADDLKQK 802 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + SGII+L + E KAS + VT+DL+++ ++A L + A GGGGGGRP MAQ+G Sbjct: 803 LGSGIIVLAAAT-EGKASFIAGVTKDLVEKGYHAGKLVKEVASRC-GGGGGGRPDMAQAG 860 Query: 879 GPNGNKADQAIAGVASFLK 897 G + D A+ V ++K Sbjct: 861 GKQPEQIDAALQIVEEWVK 879 >gi|52141119|ref|YP_085711.1| alanyl-tRNA synthetase [Bacillus cereus E33L] gi|196039230|ref|ZP_03106536.1| alanine--tRNA ligase [Bacillus cereus NVH0597-99] gi|206976027|ref|ZP_03236937.1| alanyl-tRNA synthetase [Bacillus cereus H3081.97] gi|217961878|ref|YP_002340448.1| alanyl-tRNA synthetase [Bacillus cereus AH187] gi|222097831|ref|YP_002531888.1| alanyl-tRNA synthetase [Bacillus cereus Q1] gi|228917022|ref|ZP_04080582.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935709|ref|ZP_04098522.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229141125|ref|ZP_04269667.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST26] gi|229198515|ref|ZP_04325219.1| Alanyl-tRNA synthetase [Bacillus cereus m1293] gi|59798503|sp|Q634F6|SYA_BACCZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|51974588|gb|AAU16138.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus E33L] gi|196029857|gb|EDX68458.1| alanine--tRNA ligase [Bacillus cereus NVH0597-99] gi|206745779|gb|EDZ57176.1| alanyl-tRNA synthetase [Bacillus cereus H3081.97] gi|217067465|gb|ACJ81715.1| alanyl-tRNA synthetase [Bacillus cereus AH187] gi|221241889|gb|ACM14599.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus cereus Q1] gi|228585018|gb|EEK43132.1| Alanyl-tRNA synthetase [Bacillus cereus m1293] gi|228642403|gb|EEK98692.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST26] gi|228823947|gb|EEM69766.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842629|gb|EEM87717.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 880 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|16800607|ref|NP_470875.1| alanyl-tRNA synthetase [Listeria innocua Clip11262] gi|20532255|sp|Q92BK9|SYA_LISIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|16414012|emb|CAC96770.1| alanyl-tRNA synthetase [Listeria innocua Clip11262] Length = 879 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 360/919 (39%), Positives = 530/919 (57%), Gaps = 64/919 (6%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSEDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 +D+G E P PG E ERY+EIWNLVF QF LPK +IDTGMGL Sbjct: 174 YDRGPAFGDDESDPELYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGL 231 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ERM +++Q+ N++ DLF +I+ EQ++G+KY N V +VI DH+R+ +F I D Sbjct: 232 ERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYGHSQENDVAFKVIADHIRTVAFAIGD 291 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ I+ Sbjct: 292 GALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQ 351 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +R+E+ERF +TL+ GL +L+ +L + + ++ + G FKLYDT G P+++ ++ Sbjct: 352 KVIRTEEERFHETLNEGLAILETILKNAKETNEQTIKGADIFKLYDTFGFPVELTEEYAE 411 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 GL +D F ++EQR RAR+ + S + ++ +L +K ++F+GY+ Sbjct: 412 DHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTDK---SEFVGYNT--- 464 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T VS I+ ++Q +V+E SG + +V+F +TPFYAE+G Sbjct: 465 -------------------TEHVSEIL-YLIQDDTLVDEVASGSEAQVIFKETPFYAESG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR+ Sbjct: 505 GQVADKGTIESETGVAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIK 564 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + Sbjct: 565 NHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWE 624 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V+ M +A GA AL G KY + VRVV V G +S LCGG HV +T +I Sbjct: 625 QINVIIEEMPIAEAKELGAMALFGEKYGEVVRVVQV-----GKYSIELCGGVHVRNTADI 679 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK + +VE++ Sbjct: 680 GLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQTANLLKTTTKETPQKVEQLQA 739 Query: 766 EYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + R+++ + +L D+ S +I V ++ ++ D +L+ +D + K Sbjct: 740 DLREVRRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKK 799 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G+++L G + K +++ V+ED + ++A L + A GG GGGRP MAQ+GG Sbjct: 800 IGGVLVL-GAVQGDKVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGG 857 Query: 880 PNGNKADQAIAGVASFLKK 898 N + A+ V++++K+ Sbjct: 858 KNPAELGTALDYVSTWVKE 876 >gi|228941556|ref|ZP_04104105.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974486|ref|ZP_04135053.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981080|ref|ZP_04141381.1| Alanyl-tRNA synthetase [Bacillus thuringiensis Bt407] gi|228778621|gb|EEM26887.1| Alanyl-tRNA synthetase [Bacillus thuringiensis Bt407] gi|228785203|gb|EEM33215.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818112|gb|EEM64188.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942170|gb|AEA18066.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar chinensis CT-43] Length = 880 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K ++ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFNK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLIGQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|218899557|ref|YP_002447968.1| alanyl-tRNA synthetase [Bacillus cereus G9842] gi|218542758|gb|ACK95152.1| alanyl-tRNA synthetase [Bacillus cereus G9842] Length = 880 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V++GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKKGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESINVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + +A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|228929433|ref|ZP_04092454.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830221|gb|EEM75837.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 880 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ +++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNRLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|228902916|ref|ZP_04067057.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 4222] gi|228967463|ref|ZP_04128492.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792240|gb|EEM39813.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar sotto str. T04001] gi|228856700|gb|EEN01219.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 4222] Length = 880 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLILDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESINVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + +A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|160947669|ref|ZP_02094836.1| hypothetical protein PEPMIC_01604 [Parvimonas micra ATCC 33270] gi|158446803|gb|EDP23798.1| hypothetical protein PEPMIC_01604 [Parvimonas micra ATCC 33270] Length = 868 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 352/909 (38%), Positives = 536/909 (58%), Gaps = 64/909 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +LEFF+ GH L S LIP ND +L+ N+GM P K+ FTG +K T+ Sbjct: 6 LNEIREEYLEFFESKGHLRLKSYPLIPNNDKSLLLINAGMAPLKDYFTGVKKMSKNRATS 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D+DNVG+T RH TFFEMLGNFSFG YFK AI AW+ LT++ ++D+ Sbjct: 66 SQKCIRTA----DIDNVGKTQRHGTFFEMLGNFSFGDYFKREAITWAWEFLTEKLEMDKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 L +TVY+ED+EA+ +W+ GLSA+KI R+ DNFW + E GPCGPCSEI +D+GE Sbjct: 122 LLSVTVYEEDDEAYDIWRNEVGLSAEKIQRLGKEDNFWEL-EVGPCGPCSEIMYDRGE-- 178 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 + +R++EIWNLVF QF + L +IDTGMGLER+ VL+EK N Sbjct: 179 -----KYTNPDDRFMEIWNLVFTQFNKDKDGNYHRLEHPNIDTGMGLERLTLVLEEKDNI 233 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++I L +I+ E+++G+KY+ N I ++ RVI DH R+ +FLI DG++P+NE RGYVL Sbjct: 234 FEIGLVDTIIKKIEEISGVKYKSNEISDISIRVIADHARAMTFLIYDGVIPSNEQRGYVL 293 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RRA + +LLG + ++ + + + YPEL++ I + L +E+ +F +T Sbjct: 294 RRLIRRAARHGKLLGIKDNFLVDVSKVVMEAYNTEYPELLEDSERIFKILNAEESKFQET 353 Query: 362 LDRGLVLLDGVLSHLGKDE------ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 +++GL G+L+ +DE IL+GD AFKLYDT+G PLD+ ++IL + + +D Sbjct: 354 IEQGL----GILNSYIEDEKSKNSKILSGDKAFKLYDTYGFPLDLTKEILEEQKMT-VDE 408 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +FN+ +E+Q+ RAR +G +EK LK T+F+GY + Sbjct: 409 EAFNKNMEKQKIRARQGRNVSSAGWSEKNTDYLK-SLETTEFLGY------------TEN 455 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +C I L + +I+ QG+ K +V D+T FY E GGQ+GD G Sbjct: 456 VCIGKVIKLFKDELEV--SILNQGD---------KALLVSDKTVFYGEGGGQVGDVGIIE 504 Query: 536 GDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G +L++ D +K K GIF H V G ++ L+ ID NRR + NHSATHLLH Sbjct: 505 GKHCKLKVLDTKKNKNNGIF-HSVEVIEGSVKLNDELIFKIDVNNRRDIMKNHSATHLLH 563 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+H++Q GS + + LRFD+TH + I+ +LK +E VND IA NL + + + Sbjct: 564 QALIEVLGNHINQAGSLVDANKLRFDITHFEAISPEDLKRVEQIVNDKIALNLETIIKEV 623 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E++ GA L KY D VRVVS G S LCGGTHV + EI + I+SES Sbjct: 624 PLEESSKMGAIGLFEDKYKDIVRVVSF-----GGWSIELCGGTHVKNVSEIQMFKIISES 678 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEAITG++ +L + +++ +++ LK + +V + + +E + L+ Sbjct: 679 SVAAGVRRIEAITGRKVYDYLKKTENQIEEVSNVLKCKKAEMVSKAVSMVDEIKSLEKEL 738 Query: 775 AKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + KL++ + L +I ++F++ + + +L+ ++D L+ K+ + +I+ Sbjct: 739 KEIKLEITLSSLDSFIAEKKEINGISFIAKKVEFENQNDLRDLIDKLRDKLGTSVIVFAN 798 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K + + V++DL R NA ++ R AK++ GG GGGRP +A +GG + +K D A Sbjct: 799 VY-QGKLTFTVGVSKDLNARKINAGNIVREIAKLV-GGNGGGRPDIASAGGKDLDKVDFA 856 Query: 889 IAGVASFLK 897 + LK Sbjct: 857 LKQAEEILK 865 >gi|49481702|ref|YP_038439.1| alanyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|59798537|sp|Q6HDD7|SYA_BACHK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49333258|gb|AAT63904.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 880 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ + TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLNVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRGSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|228910224|ref|ZP_04074042.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 200] gi|228849388|gb|EEM94224.1| Alanyl-tRNA synthetase [Bacillus thuringiensis IBL 200] Length = 880 Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVAVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESINVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + +A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKSIGEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|229186628|ref|ZP_04313789.1| Alanyl-tRNA synthetase [Bacillus cereus BGSC 6E1] gi|228596887|gb|EEK54546.1| Alanyl-tRNA synthetase [Bacillus cereus BGSC 6E1] Length = 880 Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 537/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI W+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWGWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQVGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHQVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|229086952|ref|ZP_04219109.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-44] gi|228696328|gb|EEL49156.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-44] Length = 880 Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust. Identities = 352/914 (38%), Positives = 536/914 (58%), Gaps = 65/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFEEKGHAIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ ED+EAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDDEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDVEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYAKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHAGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEIKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ ++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDGLQAGEEGHLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L E ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L + ++ + D VN ++ ++ D L+++MD L+ K++S + Sbjct: 747 --KENESLAAKLSNIEAGNLTDSVVTVDGVNVLATKVNVADMNNLRTMMDDLKNKLESAV 804 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N Sbjct: 805 VVLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPA 862 Query: 884 KADQAIAGVASFLK 897 + ++A++ V ++K Sbjct: 863 QVEEALSFVEEYVK 876 >gi|218680942|ref|ZP_03528839.1| alanyl-tRNA synthetase [Rhizobium etli CIAT 894] Length = 556 Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust. Identities = 296/580 (51%), Positives = 400/580 (68%), Gaps = 31/580 (5%) Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251 E+G+R++E WNLVFMQFEQ R LP+ SIDTGMGLERMA +LQ + +D DLF+ Sbjct: 2 EDGDRFLEFWNLVFMQFEQTEPGVRNPLPRPSIDTGMGLERMACILQGVQSVFDTDLFRT 61 Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311 L A E G+K G+ +HRVI DHLRSS+FLIADG+LP+NEGRGYVLRRIMRRAM + Sbjct: 62 LTGAIEDAVGVKAAGS--ASHRVIADHLRSSAFLIADGVLPSNEGRGYVLRRIMRRAMRH 119 Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371 A+LLG EPL+ LLP L +MG AYPEL++A+ LI ETL+ E+ RF KTL+RGL LL Sbjct: 120 AQLLGAKEPLIYKLLPTLVQQMGRAYPELVRAEALISETLKLEENRFRKTLERGLSLLSD 179 Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431 + L K ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F A++ Q++ AR+ Sbjct: 180 ATADLSKGDMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFTDAMQRQKAEARS 238 Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491 H G G TE +WF LK+K+GAT+F+GYD T + + Sbjct: 239 HWAGSGEKATETVWFELKDKHGATEFLGYD-----------------------TEAAAGV 275 Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551 V+AIV+ G + EA +G KV++V +QTPFY E+GGQ+GDTG D ++ ++D QKK E Sbjct: 276 VQAIVKDGAVATEAKAGDKVQIVVNQTPFYGESGGQMGDTGVISSDHGKIDVSDTQKKGE 335 Query: 552 GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSC 611 G+FVH V G+ + ++VLT+D+ R +L NHSATHLLH A+ +LG+HV+Q GS Sbjct: 336 GLFVHSGTVVEGVFKAGDAVVLTVDHARRSRLRANHSATHLLHEAMREVLGTHVAQKGSL 395 Query: 612 ITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK 671 + P+ LRFDV+H KP+++ ELK +E+ N+I+ QN PV TR+M+ +DAIA GA AL G K Sbjct: 396 VAPERLRFDVSHPKPMSAEELKVVEEMANEIVLQNAPVTTRLMSVDDAIAEGAMALFGEK 455 Query: 672 YNDRVRVVSVEYEDGGV-----HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 Y D VRVVS+ G +S LCGGTHVS+TG+I L+ I+ ES++ AG+RRIEA+ Sbjct: 456 YGDEVRVVSMGTGLHGAKSNKPYSVELCGGTHVSATGQIGLVRILGESAVGAGVRRIEAV 515 Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 TG+ AR +L QD+++K+LA+ LKV V+ RVE + +E Sbjct: 516 TGESAREYLAEQDDRVKTLAASLKVQPSEVLSRVEALMDE 555 >gi|29840633|ref|NP_829739.1| alanyl-tRNA synthetase [Chlamydophila caviae GPIC] gi|33301683|sp|Q821R2|SYA_CHLCV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29834983|gb|AAP05617.1| alanyl-tRNA synthetase [Chlamydophila caviae GPIC] Length = 875 Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust. Identities = 343/897 (38%), Positives = 509/897 (56%), Gaps = 55/897 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H ++PSS + P NDP+++FTN+GM FK+IF +E Y TT Sbjct: 4 NTLRSNFLKFYANRHHTIVPSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI AW++ F+LD R Sbjct: 64 QKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNLDPDR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW+K L +++I R+T DNFWSMAETGPCG CSE+ FD+GE Sbjct: 124 IYATVHEKDDEAFALWEK--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGEKFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P EGER++E WNLVFM+F + + LP +DTG GLER+ ++L Sbjct: 182 TAASPLEDTEGERFLEYWNLVFMEFNRTAEGSLLALPNKHVDTGAGLERLVSILSGTNTV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ + LI +EQ++G Y + + RVI DH RS SF IADG+LP N RGYVL Sbjct: 242 FEADVLRLLISKTEQLSGKTYHADEALGAAFRVIADHTRSLSFAIADGLLPGNTERGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RRA+ Y + LG+T+P + ++P+L MG AYPEL + I+E + E+E + K+ Sbjct: 302 RKILRRAVNYGKRLGFTQPFLADIVPSLVDTMGEAYPELRLSLSQIQEVMTMEEENYFKS 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL I++G+ AFKL DT+GLPLD + +L +D+ +F Q Sbjct: 362 LHRGGNLLQQVLKSSSSSSIISGEDAFKLKDTYGLPLDEIA-LLAKDYDFTVDMETFYQL 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIW--FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 EE + R+R ++ +T+ ++ SL E ++F+GY+ L F Sbjct: 421 EEEAKERSRK-NIAKSHSSTDTVYDSLSLGEN---SEFVGYNDLSCDTF----------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIG 536 ++A+V G+ V +K ++ TPFYAE GGQ+GD+G C+ G Sbjct: 466 ------------IEALVSNGKQVSSLKEKEKGALILKVTPFYAEKGGQIGDSGEIFCSDG 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 I ++ GI +HH V +G L + ++ ++ R+++ NH+ HLLH A Sbjct: 514 TFI---VSHTTSPKAGIVIHHGEVSQGQLSQDQAVTAQVNCIRRKKIGNNHTGCHLLHKA 570 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LG H+ Q GS + +R D TH K I +L SIE VN+ I +N V TR Sbjct: 571 LEVTLGDHIRQAGSYVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREAMY 630 Query: 657 EDAIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 D + S G KY+D VRVVS + S LCGGTH TG++ I+ E + Sbjct: 631 SDVMNSKEIKQFFGDKYSDVVRVVSAGF------SHELCGGTHAEFTGDLGYFRILKEHA 684 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + GIRRIEA+TG+ A + +E L +A L+ + ++ +++ + EE ++ Q+ Sbjct: 685 VATGIRRIEAVTGREAEALAHQDNENLNEIALVLQSPRDQILNKLQNVLEERKEQAKQIS 744 Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + KL ++ D C ++ DV+++ H + E +S L+ + L +KI +I L Sbjct: 745 ELENKLIHSLLDKLIDGCQQVDDVSYLIHHLPESESHRLQQYANCLHQKIPLRLISLWTT 804 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 K K + +++DL+ + A DL ++ GG GG+ AQ N +AD Sbjct: 805 QKNGKYIIFSRISDDLVKQGLQAKDLLKIVLTPC-GGRWGGKDIFAQGSADNLPQAD 860 >gi|15834749|ref|NP_296508.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg] gi|270284916|ref|ZP_06194310.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg] gi|270288943|ref|ZP_06195245.1| alanyl-tRNA synthetase [Chlamydia muridarum Weiss] gi|13878778|sp|Q9PLH5|SYA_CHLMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|7190160|gb|AAF39003.1| alanyl-tRNA synthetase [Chlamydia muridarum Nigg] Length = 875 Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust. Identities = 330/883 (37%), Positives = 504/883 (57%), Gaps = 47/883 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y TT Sbjct: 4 NTLRSNFLKFYTNRNHTPVASSPVFPYNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 64 QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFDPDF 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW+K L ++I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTNRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 182 KATSPLEDADGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLSETDTV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ +HLI E ++ + Y RVI DH+RS SF I DG+LP N RGYVL Sbjct: 242 FEADVLRHLIAKVENLSEITYSPTESKGSAFRVIADHVRSLSFAITDGLLPGNTERGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RRA+ Y + LG+ P + ++P+L MG AYPEL A+ I+E L +E+E F KT Sbjct: 302 RKILRRAVNYGKRLGFHRPFLAEIVPSLIETMGEAYPELQAAETQIQEVLTTEEEHFFKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL ++G+ AFKL DT+GLP+D + +L +D+ +F + Sbjct: 362 LQRGGNLLHQVLKSSASLSKISGEDAFKLKDTYGLPIDEIA-LLAKDHNYTVDMDTFRKL 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 E + R+R +++ ++ I F + ++F+GYD+L F Sbjct: 421 EMEAKERSRKNTVK-NKNDSDSI-FQDVDPTNTSEFVGYDMLSCDTF------------- 465 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 ++ IV+ EI G++ ++ TPFYAE GGQ+GD+G + Sbjct: 466 ----------IEGIVKYNEIASTLEEGEEGAIILRTTPFYAEKGGQVGDSGEIFCESGTF 515 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++ G+ HH + +G L+T M++ ++ R++++ NH+ HLLH AL L Sbjct: 516 LVSHTTTPKAGLIAHHGKLSQGSLQTTMAVTAQVNQNLRKKIANNHTGCHLLHKALEVSL 575 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI- 660 G H+ Q GS + +R D +H+K ++ EL +IE VN+ I +N+PV R D + Sbjct: 576 GEHIRQAGSYVDSQKIRLDFSHNKALSPEELLTIETLVNEKIRENVPVTIREALYSDVMN 635 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 +S G KY D VRVVS + S LCGGTH +TG+I I E ++ GI Sbjct: 636 SSEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHARATGDIGYFRITKEHAVSTGI 689 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778 RRIEA TG+ A + GQD L +A+ ++ + ++ ++ + EE + L QL + + + Sbjct: 690 RRIEATTGEDAENIARGQDTDLNEIATIIQSPKDQLLVKLRNVMEEKKDLAKQLANLENQ 749 Query: 779 L-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L Q V+ L SC K+ + +++ + ++E + + ++ + L K++ + I L K + Sbjct: 750 LVQQQVKSLLTSCDKVNETSYLVYHLTEEEGQRIQHYANTLHKEVPAKFISLWVTEKNDR 809 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876 VL+ V++DL+ + +D L ++L GG GG+ AQ Sbjct: 810 YIVLVRVSDDLVKQ--GIDAQALLEELLAPYGGRCGGKAVSAQ 850 >gi|228987640|ref|ZP_04147754.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772100|gb|EEM20552.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 880 Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+ + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVTVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQTDELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|229175062|ref|ZP_04302580.1| Alanyl-tRNA synthetase [Bacillus cereus MM3] gi|228608430|gb|EEK65734.1| Alanyl-tRNA synthetase [Bacillus cereus MM3] Length = 880 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+ + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVLVVGEVMKDFYPEVVEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVITKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQEGFESEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|299140238|ref|ZP_07033404.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8] gi|298597777|gb|EFI53949.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX8] Length = 895 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 358/936 (38%), Positives = 535/936 (57%), Gaps = 92/936 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+S IR FL FF++ GH + SSSL+P NDPTL+FTN+GM FK++F G E Y Sbjct: 1 MRNLSGNQIREEFLRFFEEKGHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGAETRDY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 + QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW+LLT E Sbjct: 61 SRAASSQKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKRDAIKYAWELLTSED 120 Query: 118 -FDLDQRRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 F +D+ +LY+T+++ D EA + W + +G+ D+I + DNFW+M +TGPCG Sbjct: 121 WFGIDKSKLYVTIFEGDAAVPRDNEAEQFWLE-AGVPKDRIYELGAKDNFWAMGDTGPCG 179 Query: 171 PCSEIFFD-------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 PCSEI++D GE P G E+ +RY+EIWNLVFMQF++ + LPK S Sbjct: 180 PCSEIYYDLGLAASETGEDKPFG-----EDDQRYMEIWNLVFMQFDRSSDGVLTPLPKPS 234 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------------NN 268 IDTGMGLER+A VLQ K +NY+ DLF L+ A+ ++T Sbjct: 235 IDTGMGLERVACVLQGKLSNYESDLFTPLLAAAVKLTNFAQSSELREASIEQLAVSDEKG 294 Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328 + R+I DH R+S+FLI+DG+LPANEGRGYVLR+I+RR + + RLLG +P M ++ A Sbjct: 295 AASLRIIADHARASTFLISDGVLPANEGRGYVLRKILRRGIRHGRLLGQEKPFMHEMVLA 354 Query: 329 LCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF 388 + EMG AYPEL + + + + +E+++F +TL+ G L + ++ + +G AF Sbjct: 355 VRDEMGEAYPELKDSAERVAKVVLAEEQQFARTLELG-------LRQMNEETLRSGSQAF 407 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 LY+T G+PLD M D G+ D+ F A EE++ RARA G + ++ L Sbjct: 408 HLYETFGMPLDFMVDAARDAGIE-FDMAGFEAAKEEEQQRARASWKGGSQKSASPVYREL 466 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 + T+F GY LR +G I A+V+ G V E G Sbjct: 467 AK----TEFEGYTSLR--------------------VDGAKVI--ALVKDGVGVNELKPG 500 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565 + EVV D T FYA++GGQ+GD G A + + +++ +K +G+F H V++ I Sbjct: 501 ETGEVVLDATSFYADSGGQVGDVGWLYSADHNTVVAEVSGCKKPVQGVFAHAVTVKQSIA 560 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 + ++ ++ + R + NH+ THLLH AL +LG+HV Q GS LRFD +H Sbjct: 561 VGD-TVDTVVNGEVRAAVMRNHTGTHLLHAALRQVLGTHVKQAGSLNDRARLRFDFSHFT 619 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS--GAAALLGTKYNDRVRVVSVEY 683 + EL+ +ED VN + N V T + D GA AL G KY +RVRVV + Sbjct: 620 GVADEELQEVEDIVNRQVLANTLVQTLVDVPIDVAVHELGAMALFGEKYGERVRVVKI-- 677 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 G S+ LCGGTH+++TGEI L+ +V E ++ +G+RR+EA+TG + + + K Sbjct: 678 ---GDFSTELCGGTHIAATGEIGLVKLVGEGAVASGVRRVEAVTGTGSLAVFRRDADVAK 734 Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMS 798 A F ++ RV +E +KL+ + +++ + ++ V ++ Sbjct: 735 VAAQFGAGDADSLRARVAAQDDEMKKLRRELEQMRMKSASAATADAASSAVEVKGVKVLA 794 Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL-AR 857 + +D ++++++D L+ K+ SG+++L G + E + S+++ VT+DL+ + A + + Sbjct: 795 QRVDALDKSQMRNLVDELRGKLGSGVVVL-GAATEGRVSLIVGVTKDLIGKVQAGKIVGQ 853 Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 ++AKV G GGGRP +A++GG + D A+A A Sbjct: 854 IAAKVG--GKGGGRPDLAEAGGSDVAALDGALASAA 887 >gi|228923140|ref|ZP_04086431.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836519|gb|EEM81869.1| Alanyl-tRNA synthetase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 880 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 354/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+ + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVTVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHEGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQTGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVLVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAIIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERMVNEKIWESIDVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLIGQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|242242892|ref|ZP_04797337.1| alanyl-tRNA synthetase [Staphylococcus epidermidis W23144] gi|242233667|gb|EES35979.1| alanyl-tRNA synthetase [Staphylococcus epidermidis W23144] Length = 876 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 349/920 (37%), Positives = 523/920 (56%), Gaps = 79/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T++ ED EA+++W + GL +IIRI NFW + E GP GP +EIF+D+G Sbjct: 123 EKLYVTIHPEDTEAYRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGLA 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGKDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I+ E V+G KY + V +VI DH+R+ SF IADG Sbjct: 234 MTSISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSHFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ D+++ G AFKLYDT+G P+++ +++ Sbjct: 354 IKSEEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQEN 413 Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L+ +D+ +F Q +++QR RAR + S+ + S LK +QF+GY+ Sbjct: 414 LS-VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV-------LKNIQDDSQFVGYE--- 462 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 T S++ I+ GE V+ A +G+ + + +TPFYA + Sbjct: 463 --------------------TTDYQSLLTHIIYNGEEVKHAEAGETIYFILRETPFYAVS 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G + + +TDV K G +H +V+ G + ++ ++RR + Sbjct: 503 GGQVADKGTVGNENFEINVTDVTKAPNGQNLHKGVVQFGEATQNAKVEARVNKEDRRLIQ 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV+Q GS + P+ LRFD +H P+T E+ +E VN+ I Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIW 622 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V + M+ E+A + GA AL G KY D VRVV++ S LCGG HV++T E Sbjct: 623 RAIDVRIQEMSIEEAKSIGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTAE 677 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEI 763 I L IVSES AG+RRIEA+TG+ A HL + + ++ + LKV N VV +V+++ Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKGAFLHLEEIETQFNTIKNHLKVKSDNQVVEKVKQL 737 Query: 764 WEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE ++L +R ++ N+E+ I D+ ++ + + K ++S+MD + Sbjct: 738 QEEEKELLKQLEQRNKEITSLKLGNIEE-QVELINDLKVLATEVEIPNPKAIRSIMDDFK 796 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K+Q II+LVG + K SV+ V + L ++ A DL + ++ GG GGGRP MAQ Sbjct: 797 SKLQDTIIVLVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQG 854 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG K +A+ + ++K Sbjct: 855 GGTQPEKITEALRFIKDYIK 874 >gi|313888208|ref|ZP_07821882.1| alanine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845898|gb|EFR33285.1| alanine--tRNA ligase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 870 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 357/916 (38%), Positives = 536/916 (58%), Gaps = 78/916 (8%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 IRT FL+FF+ GH +LPS SLIP ND +L+ +GM P K FTG+E P + VTT Q Sbjct: 8 DIRTEFLKFFESKGHFILPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEEIPPAKRVTTCQ 67 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R G D+DNVG T+RH TFFEMLGNFSFG YFK I AW+ LT ++ + L Sbjct: 68 KCIRTG----DIDNVGLTDRHATFFEMLGNFSFGDYFKHEVIPWAWEFLTVNLEIPKEDL 123 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180 ++TVY ED+EA+ +WK + G+ +KIIR+ DNFW + E GP GPCSEI+ D+G Sbjct: 124 WVTVYYEDDEAYNIWKDVVGIDEEKIIRLGKEDNFWEL-EVGPSGPCSEIYVDRGLEHGS 182 Query: 181 -ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + PGG EG+R+IE+WNLVF QF++ + L +IDTGMGLER+ATVLQ Sbjct: 183 EDERPGG------EGDRFIEVWNLVFTQFDKDEEGNYKPLAHPNIDTGMGLERIATVLQG 236 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N ++ID K +IQ +V+G KY + N ++ RVI DH+R+ +F+I+D I+P+NEGR Sbjct: 237 TDNIFEIDAIKDIIQEIAKVSGKKYGQDKNADISFRVITDHIRAMTFMISDTIVPSNEGR 296 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R LG + + + G Y EL + + I+E +R E+E+ Sbjct: 297 GYVLRRLIRRAARHGRKLGIERAFLYEIADMVINSWGEQYTELKENRESIKEIIRREEEK 356 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D GLV L + + +++L+G+ AFKLYDT+G P+D+ ++IL G +D+ Sbjct: 357 FLETIDGGLVRLKAHIDEMKENNEKLLDGEKAFKLYDTYGFPIDLTEEILREDGY-DVDM 415 Query: 416 ISFNQALEEQRSRARA----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 F + +++Q+ RAR ++G + + ++ L + +F+GY Sbjct: 416 EGFQKEMDDQKRRAREARNDSNVGWANQDNKHLFEGL-----SDEFLGY----------- 459 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +K D + I+ EIV+ GQ+ VV D+T FY E+GGQ+GDT Sbjct: 460 ------EKDECDAN------ITRIIADDEIVDSLEEGQEGLVVLDKTTFYGESGGQVGDT 507 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G I D +L++TD +K +G+ +H VE G L + + ID + R + NHS TH Sbjct: 508 GEIISDNFKLRVTDTKKTKDGLHLHLVKVEEGRLE-KAPVKAIIDSKRRNNIRRNHSVTH 566 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LGSHV+Q GS + D +RFD +H +T E+ +E VN+ I + LPV T Sbjct: 567 LLHRALKDVLGSHVNQAGSLVMADRMRFDFSHFDAMTKEEIAEVERRVNEKIFEGLPVET 626 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 ++ E+A GA L KY D+VRV+S+ G +S LCGGTHVS+T EI + I+ Sbjct: 627 KVTGLEEAKEMGAIGLFEGKYQDQVRVLSM-----GDYSRELCGGTHVSNTSEISMFKIL 681 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I G+RRIE+ITG +L K + +AS LK ++ ++ ++ + Sbjct: 682 SESGISNGVRRIESITGPAVYEYLNNLSAKEEEIASELKSNKDEIIQKI-----KLNIKN 736 Query: 772 LIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISE---VDSKELKSVMDALQKKIQ 821 L A + L+ DL+ +I+D+ N + ++I + VD L+ + D ++ K+ Sbjct: 737 LKEANKNLEKLEHDLAKDQISDITGDVREKNGIKYVIKKFDGVDVNTLRDLADEVRNKLG 796 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++ ++ + K + + V++DL+D + A L + AKV GGGGGGRP MA +G Sbjct: 797 SVVVLFAAVN-DDKLNFVCAVSKDLVDKKIAAGKLIKKIAKV-AGGGGGGRPDMATAGAK 854 Query: 881 NGNKADQAIAGVASFL 896 + +K ++A+ + L Sbjct: 855 DLDKVEEALNKLDELL 870 >gi|237739614|ref|ZP_04570095.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31] gi|229423222|gb|EEO38269.1| alanyl-tRNA synthetase [Fusobacterium sp. 2_1_31] Length = 867 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 345/894 (38%), Positives = 519/894 (58%), Gaps = 62/894 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Y VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI +W+ +T+ LD+ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKLDKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA ++W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 NN++ DL +++ + ++TG +Y N N +VI DH R+ +FL+ DG++P+NEGRG Sbjct: 239 PNNFETDLLFPILEEAARITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGY + M ++ + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+V+FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEVSFKLYDTYGFPYELTEEIAEERGVTVLR- 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +K+G T+F GY+ ED Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYE-------KTEDEAT 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L EA G+ + ++FD+TPFYAE+GGQ+GD G Sbjct: 470 LLSS-----------------------REAKDGKYL-LIFDKTPFYAESGGQVGDQGRIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H +E+G + L ++ R + NH+ATHLLH Sbjct: 506 SDNFSAKVLDVQKQKD-IFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + PD LRFD +H + +T+ +L IE+ VN+ I + + VV + Sbjct: 565 ALREVVGTHVQQAGSLVDPDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIDVVVSHHS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY + VRVV V S+ LCGGTH+ + +I L IVSE Sbjct: 625 IEEAKNLGAMMLFGDKYGEVVRVVDV-----SGFSTELCGGTHIDNIAKIGLFKIVSEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773 I AG+RRIEA TG A + + LK + LK S NVV +VE+ E + + L Sbjct: 680 IAAGVRRIEAKTGYGAYLAEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKDAEKALE 739 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830 K+K+ L + + ++N +I+ K +L++++D ++ + I++L Sbjct: 740 SLKQKIALFETKAALSGMEEINGAKVLIATFKDKTADDLRTMIDTIKDNNEKAIVVLA-- 797 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 S + K S + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + +K Sbjct: 798 STQDKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESK 850 >gi|329724728|gb|EGG61234.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU144] Length = 876 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 525/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T++ ED EAF++W + GL +IIRI NFW + E GP GP +EIF+D+G Sbjct: 123 EKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGSA 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGKDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I+ E V+G KY + V +VI DH+R+ SF IADG Sbjct: 234 MTSISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ D+++ G AFKLYDT+G P+++ +++ Sbjct: 354 IKSEEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQEN 413 Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L+ +D+ +F Q +++QR RAR + S+ + S LK +QF+GY+ Sbjct: 414 LS-VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV-------LKNIQDESQFVGYE--- 462 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 T S++ I+ GE V+ +G+ + + +TPFYA + Sbjct: 463 --------------------TTDYQSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVS 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G + + +TDV K G +H IV+ G + ++ ++RR + Sbjct: 503 GGQVADKGTVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQ 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV+Q GS + P+ LRFD +H P+T E+ +E VN+ I Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIW 622 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V + M+ E+A + GA AL G KY D VRVV++ S LCGG HV++T E Sbjct: 623 RAIDVRIQEMSIEEAKSIGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTAE 677 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEI 763 I L+ IVSES AG+RRIEA+TG+ A HL + + ++ + LKV N VV +V+++ Sbjct: 678 IGLVKIVSESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQL 737 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVD---SKELKSVM 813 EE + L ++L+ ++++ K+ D +N + + +EV+ K ++S M Sbjct: 738 QEEEKGLL-----KQLEQRNKEITSLKMGDIEEQVELINNLKVLATEVEIPNPKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+LVG + K SV+ V + L ++ A DL + ++ GG GGGRP Sbjct: 793 DDFKSKLQDTIIVLVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG K +A+ + ++K Sbjct: 851 MAQGGGTQPEKITEALRFIKDYIK 874 >gi|331083851|ref|ZP_08332960.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403276|gb|EGG82836.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 6_1_63FAA] Length = 879 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 364/908 (40%), Positives = 526/908 (57%), Gaps = 54/908 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ H + S SL+P ND +L+ NSGM P K FTG E P + VTT Sbjct: 6 VNELRKMFLEFFESKEHLAMKSFSLVPRNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD + Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIAWSWEFLTEVVGLDPQ 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y+EDEEAF++W K G+ A++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSIYEEDEEAFEIWNKEMGIPAERIFRFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QFE + L + +IDTGMGLER+A+V+Q+ Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFESDGEGNYTELVQKNIDTGMGLERLASVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D L ++ +Y+ + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 241 SIFDVDTLCALRTKVCELAHTEYKKDAAKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + K I + L E+E+F Sbjct: 301 VLRRLIRRAARHGRLLGIEGKFLAELSAVVIEGSKDGYPELEEKKDFIFQVLTKEEEQFN 360 Query: 360 KTLDRGLVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 KT+D+GL +L + + GK E L+G+ AFKLYDT+G PLD+ ++IL +G ID Sbjct: 361 KTIDQGLNILSEMEAAMKAEGKTE-LSGEAAFKLYDTYGFPLDLTKEILEEKGCT-IDEA 418 Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A++EQR +AR A S G ++ + T+F+GYD L Sbjct: 419 GFKAAMDEQREKARIARSTTNYMGADATVYDEIDVNV-TTEFVGYDSLT----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-A 534 +S + + + EI+E Q+ V +QTPFYA GGQ GD G Sbjct: 467 ------------CTSKITVLTTEDEIIEALTEDQRGTVFVEQTPFYATMGGQQGDKGVIT 514 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +GD ++ D G H ++ +G+L+T + L + + R NHSATHLL Sbjct: 515 LGDA-EFKVEDTINLRGGKVGHVGVLTKGMLKTGDVVTLQVCEKYRMNSCKNHSATHLLQ 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL T+LGSHV Q GS +TPD LRFD H + +T+ EL +E+ VN I LPVVT +M Sbjct: 574 KALKTVLGSHVEQKGSLVTPDRLRFDFAHFQSMTAEELAKVEEIVNKEIQAALPVVTEVM 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A +GA AL G KY + VRVVS+ G S LCGGTHVS+TG I I+SES Sbjct: 634 SIEEAKKAGAMALFGEKYGEEVRVVSM-----GDFSKELCGGTHVSNTGVITTFKIISES 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG ++ ++K +A+ LK S + ++ + E + L + Sbjct: 689 GIAAGVRRIEALTGDGVFAYYKEIEKKQAEIAAMLKTSPSEIEEKIAHLQAEVKALHSEN 748 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K ++ E + ++ V ++ +++VD L+ + D L++K+ G+++L Sbjct: 749 ESLKAKMAQEAVGDVLNQVQEVKGVKLLAVSLTDVDMNGLRDLGDQLKEKLGEGVVVLAS 808 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ K S+L +VTE +A +L + A ++ GGGGGGRP+MAQ+GG N +K +A Sbjct: 809 VAG-GKVSLLAMVTEQAQKAGAHAGNLIKGMAAIV-GGGGGGRPNMAQAGGKNPDKVPEA 866 Query: 889 IAGVASFL 896 + A+ L Sbjct: 867 LETAANIL 874 >gi|315303256|ref|ZP_07873900.1| alanyl-tRNA synthetase [Listeria ivanovii FSL F6-596] gi|313628368|gb|EFR96857.1| alanyl-tRNA synthetase [Listeria ivanovii FSL F6-596] Length = 879 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 360/923 (39%), Positives = 529/923 (57%), Gaps = 72/923 (7%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIEFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA +W+ GL+ + I+ I +DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTIWRDKIGLTDEHIVEI--DDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDENDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ++G+KY E N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQISGVKYASESENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLNINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + K ++++ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILENAKKTDEQVIQGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLR-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---STFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ I+ +V+E +G + +++F +TPFY Sbjct: 464 T----------------------TEYVSEIL-YIIHNDVLVDEVAAGSEAQLIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +V+ G+L T ++ L++D RR Sbjct: 501 AESGGQVADKGTIQSETGLAHVEDVQKAPNKQNXXXVVVKEGVLTTGDTVKLSVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E VN+ Sbjct: 561 ETVKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEKIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQIAVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK A+ LK + ++E Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKAAYHFVTEQENILKHAANLLKTTTKETPQKIE 735 Query: 762 EIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + + R+++ + +L D+ S +I VN ++ ++ D +L+ +D Sbjct: 736 LLQADLREVRRENDSLLSKLASAASADIFESPEEIGGVNVIAKQVTAKDMNQLRQFVDNW 795 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 + K GI++L G + K +++ V+ED + ++A L + A GG GGGRP MA Sbjct: 796 KDKKIGGILVL-GAVQGDKVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMA 853 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q+GG N + A+ V++++K+ Sbjct: 854 QAGGKNPAELGSALDYVSTWVKE 876 >gi|315282412|ref|ZP_07870831.1| alanyl-tRNA synthetase [Listeria marthii FSL S4-120] gi|313613946|gb|EFR87671.1| alanyl-tRNA synthetase [Listeria marthii FSL S4-120] Length = 864 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 357/913 (39%), Positives = 523/913 (57%), Gaps = 80/913 (8%) Query: 14 FFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGK 73 FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P + QK +R Sbjct: 1 FFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDNPRMANAQKSIRT--- 57 Query: 74 HNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYD 131 ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D +LY+TVY Sbjct: 58 -NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAILFAWEFLTSPKWIGFDPDKLYVTVYP 116 Query: 132 EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----------E 181 EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF+D+G E Sbjct: 117 EDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIFYDRGPSFGDDASDPE 173 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 PGG E ERY+EIWNLVF QF LPK +IDTGMGLERM +++Q+ Sbjct: 174 LYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERMVSIIQDAP 227 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N++ DLF +I+ EQ+ G+KY + N V +VI DH+R+ +F I DG LP+NEGRGY Sbjct: 228 TNFETDLFMPIIREVEQIAGVKYGQKQENDVAFKVIADHIRTVAFAIGDGALPSNEGRGY 287 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RRA+ YA++L EP M L+P + M S YPE+ I++ +R+E+ERF Sbjct: 288 ILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQTDFIQKVIRTEEERFH 347 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TL+ GL +L+ +L + + ++++ G FKLYDT G P+++ ++ GL +D Sbjct: 348 ETLNEGLAILETILKNAKETNEQVIKGADIFKLYDTFGFPVELTEEYAEDHGLK-VDHAG 406 Query: 418 FNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F ++EQR RAR+ + S + ++ +L EK ++F+GY+ Sbjct: 407 FEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SEFVGYNT-------------- 449 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 T VS I+ ++Q +V+E +G++ +V+F +TPFYAE+GGQ+ D G Sbjct: 450 --------TEHVSEIL-YLIQNDTLVDEVAAGEEAQVIFKETPFYAESGGQVADKGTIES 500 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + DVQK +H V+ G+L+T ++ L +D RR+ NH+ATHLLH A Sbjct: 501 ETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNHTATHLLHRA 560 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ I + + VV M Sbjct: 561 LKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWEQINVVIEEMPI 620 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +A GA AL G KY D VRVV V G +S LCGG HV +T +I L IVSE+ I Sbjct: 621 AEAKELGAMALFGEKYGDVVRVVQV-----GKYSIELCGGVHVRNTADIGLFKIVSETGI 675 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG RRIEA+TG+ A + Q+ LK A+ LK + +VE++ + R++ K Sbjct: 676 GAGTRRIEAVTGKEAYRFVTEQENTLKHAANLLKTTTKETPQKVEQLQADLREV-----K 730 Query: 777 RKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 R+ + + L+ AD V ++ ++ D +L+ +D + K G+++ Sbjct: 731 RENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDKKIGGVLV 790 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G + K +++ V+ED + ++A L + A GG GGGRP MAQ+GG N + Sbjct: 791 L-GAVQGDKVNLISAVSEDAIKAGYHAGKLLKEVATRC-GGNGGGRPDMAQAGGKNPAEL 848 Query: 886 DQAIAGVASFLKK 898 A+ V++++K+ Sbjct: 849 GTALDYVSTWVKE 861 >gi|262189584|ref|ZP_06047986.1| alanyl-tRNA synthetase [Vibrio cholerae CT 5369-93] gi|262034534|gb|EEY52872.1| alanyl-tRNA synthetase [Vibrio cholerae CT 5369-93] Length = 781 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 344/805 (42%), Positives = 477/805 (59%), Gaps = 67/805 (8%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151 MLGNFSFG YFKE AIQ AW+ LT L + RL +TVY+ D+EAF +W K G+ AD+I Sbjct: 1 MLGNFSFGDYFKEDAIQYAWEFLTDVLQLPKERLLVTVYETDDEAFDIWNKKVGIPADRI 60 Query: 152 IRITT--------NDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWN 202 IRI +DNFW M +TGPCGPC+EIF+D GE I GG PGS EE G+R+IEIWN Sbjct: 61 IRIGDKKGGKKFDSDNFWQMGDTGPCGPCTEIFYDHGEHIWGGPPGSPEEDGDRFIEIWN 120 Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262 VFMQF + LPK S+DTGMG+ER++ ++Q +NY+ID+F+ LI+A+ G Sbjct: 121 NVFMQFNRHADGTMEPLPKPSVDTGMGIERISAIMQGVHSNYEIDVFQTLIKAAADAIGY 180 Query: 263 KYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM 322 + N + RV+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ + LG Sbjct: 181 QDLTNQSL--RVVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFF 238 Query: 323 MHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL 382 L+ L MG+A EL + + L+E+ LR E+E FG+TLDRG+ +L+ L L ++L Sbjct: 239 HKLVGPLAEVMGTAGAELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQL-SGQVL 297 Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442 +G+ FKLYDT+G P D+ D+ RG + ID F QA+EEQR RAR +G Sbjct: 298 DGETVFKLYDTYGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRARE------AGQFG 350 Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502 + SL + T+F GY RG S+V+ + +G V Sbjct: 351 TDYNSLIKSATNTEFCGYTASRGQ-----------------------SVVREMFVEGAEV 387 Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562 +G K +V D TPFYAE+GGQ GDTG D + D QK I HH ++ + Sbjct: 388 STLSAGDKAIIVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQ 446 Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622 G+L T + +D + R +S+NHSATHLLH AL +LG HV+Q GS + + LRFD + Sbjct: 447 GVLATGDQVDAIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDFS 506 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682 H + +T AE+K +E VN I N + T IMN ++A A GA AL G KY+D+VRV+S+ Sbjct: 507 HLEAMTPAEIKEVERLVNQEIRHNHNIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSM- 565 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ---- 738 G S+ LCGG H S+TG+I L I+SE I AGIRRIEA+TG+ A +L Q Sbjct: 566 ----GDFSTELCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDYLDAQQAQH 621 Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798 D K+ +A+ K+ + +EI + KL AK L + +IA VN + Sbjct: 622 DAKVSEMAAKAKLLE-------KEIQQLKDKLA---AKESAGLINQ---VKQIAGVNVLV 668 Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 ++ D+K L+ ++D L+ ++ SGIIML ++ E K ++ VT DL ++ A +L + Sbjct: 669 AQLNGADNKALRGMVDDLKNQLSSGIIMLGNVA-EGKVGLIAGVTNDLTNKVKAGELVNM 727 Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGN 883 A + GG GGGRP MAQ+GG + + Sbjct: 728 VALQV-GGKGGGRPDMAQAGGTDAH 751 >gi|193213512|ref|YP_001999465.1| alanyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327] gi|193086989|gb|ACF12265.1| alanyl-tRNA synthetase [Chlorobaculum parvum NCIB 8327] Length = 885 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 349/924 (37%), Positives = 509/924 (55%), Gaps = 73/924 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N IR +FL+FF H ++ S+ +IP DPTL+FTN+GM FK++F G+ Y Sbjct: 2 NSREIRQSFLDFFAAKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLGKGTREYTRAA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+L+T + L + Sbjct: 62 DTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTDVWKLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY TVY +DEE+FKLW+ + + I++ DNFW M ETGPCGPCSEI D Sbjct: 122 ERLYATVYHDDEESFKLWQSETDIEHSHILKFGDKDNFWEMGETGPCGPCSEIHIDLTPD 181 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GG P + R IE+WNLVF+Q+++Q LP+ +DTGMG ER+ VLQ K++ Sbjct: 182 GSGG-PLVNVGDHRVIELWNLVFIQYDRQADGSLQPLPQKHVDTGMGFERVTAVLQGKSS 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NYD D+F L + ++TG++Y + + RVI DH R+ +F ++DG +P NEGRG Sbjct: 241 NYDSDVFTPLFEKITELTGVRYTASLDSATDIAMRVIADHCRTLTFALSDGAMPGNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ YA LG EP+M ++ L MG +PEL + + +E+ +R+E+E F Sbjct: 301 YVLRRILRRAVRYAGTLGCHEPIMYKMVEVLVRTMGDVFPELEKQQPTVEKIIRAEEESF 360 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 TL RG + + V++ + ++G+ AFKLYDT G PLD+ + + G GID Sbjct: 361 LVTLGRGTEIFNEVVAGMKTSGSTTISGEDAFKLYDTFGFPLDLTRLMAAEVGF-GIDEE 419 Query: 417 SFNQALEEQRSRA---RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + EQ++RA R + + E WF+ + T+F+GYD L Sbjct: 420 GFEHCMTEQKTRARMDRKDKMQVQDDGGEWQWFAPE---APTEFVGYDTLE--------- 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T+ + VK G ++ VV D+TPFYAE+GGQ+GD G Sbjct: 468 -----------TSATLTAVK------------TGGDRLMVVLDRTPFYAESGGQVGDHGT 504 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT------------EMSLVLTIDYQNRR 581 D RL +TD +K E + +H R +R +S+ +D R Sbjct: 505 IETDDYRLDVTDTRKDGE-LVIHFVTSARDKVRDCAVSPADLSFEGAVSVEAAVDRDRRV 563 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 NH+ATHLLH AL +LG HV Q GS +TP+ LRFD +H ++ E++ +E VN Sbjct: 564 ATERNHTATHLLHAALRKVLGEHVQQKGSLVTPERLRFDFSHFSKVSPEEMEQVEHEVNA 623 Query: 642 IIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I + V + E+A+ GA A G KY DRVRVV V G+ S LCGGTHV Sbjct: 624 QIRKAAGVTKHADVPYEEALELGALAFFGDKYADRVRVVDVP----GI-SIELCGGTHVG 678 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-R 759 + G+I ++ IVSESS+ AGIRRIEA+TG A + L + L+ + + LK+ G + Sbjct: 679 NIGQIGMVKIVSESSVAAGIRRIEAVTGAAAEALLWQEYRNLQEIKNLLKLKADEEAGPK 738 Query: 760 VEEIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814 ++E+ +E + L + +L QL+ S +I M+ + + EL+ Sbjct: 739 IKELLDEKKALDKQLQESRLSGLLNQLSATLASAAEIGGCRIMTEQLDGLGGDELRQAAV 798 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGGGGRPH 873 AL+++ +L ++ K V E + L + NA L + +A + GGGGG+P Sbjct: 799 ALREQASCAAGLLCSVTDGKVFLVGFASDEAVKLKKINAGKLVKEAAACV-KGGGGGKPE 857 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 +A +GG + + +AI + +K Sbjct: 858 LATAGGKDPDGIGKAIETFVASVK 881 >gi|313683350|ref|YP_004061088.1| alanyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994] gi|313156210|gb|ADR34888.1| alanyl-tRNA synthetase [Sulfuricurvum kujiense DSM 16994] Length = 851 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 357/895 (39%), Positives = 518/895 (57%), Gaps = 54/895 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 +R FL FF+ HE +PSS L+P +D TL+FTN+GMVPFK+IFTG P T+ Q Sbjct: 4 VREAFLAFFESKQHERVPSSPLVP-DDATLLFTNAGMVPFKSIFTGDIPIPANPRATSAQ 62 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ L + +L Sbjct: 63 TCIRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKEEAIAHAWEFVTEVMKLPKEKL 122 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 ++TV++ D+EA ++WKK ++AD+I+R+ DNFW M +TGPCGPCSEIF DQG E Sbjct: 123 WVTVHESDDEAEEIWKK--HIAADRIMRLGDKDNFWQMGDTGPCGPCSEIFIDQGAEHFN 180 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ K E LPK SIDTGMGLER VL+ T+NY Sbjct: 181 GPEDYMGGDGDRFLEIWNLVFMQYERNAKGELKPLPKPSIDTGMGLERATAVLEGVTSNY 240 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF +I+ E + G Y ++RVI DH+R+ +FL+A G +NEGRGYVLRRI Sbjct: 241 DSTLFMPIIKKVEALIGKPYVYATGASYRVIADHIRTVTFLLAQGTNFSNEGRGYVLRRI 300 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG+T+P M + + MG YP +++ +++E + E+ERF KT+ Sbjct: 301 LRRAVRHGYLLGFTKPFMFEVADTVAELMGKQYPYIVEKLAVLKEQIMLEEERFFKTIAS 360 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ L + L + +G+VAFKLYDT G PLD+ +D+L + L+ +D+ +F + E Sbjct: 361 GIELFNEELKN--TKGTFSGEVAFKLYDTFGFPLDLTEDMLREKNLS-LDVETFETLMSE 417 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 QR RA+A G G E + +L E +G FIGY K P+ Sbjct: 418 QRKRAKAAWKGSGDAHVEGDFKTLLETFGVNTFIGY---------------AYTKAPV-- 460 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 I + + E V++ + QK V+ ++TPFYAE+GGQ GDTG L Sbjct: 461 -----KIQALLGENFERVDQLHAHQKGWVLLEETPFYAESGGQCGDTGTLDDKATVLDT- 514 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 KK G+ + H I + L ++ +D + R +++ +HSATHLLH AL +LG H Sbjct: 515 ---KKFHGLNLSH-IETKATLSVGDTVNALVDPE-RNEIAKHHSATHLLHAALYEVLGEH 569 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 +SQ GS + + LRFD +H K ++ E+ +E+ VN + L +TR M+ +DA SGA Sbjct: 570 ISQAGSLVEHNRLRFDFSHPKAMSHEEIALVEERVNYHVFHALEGMTREMSIDDAKKSGA 629 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 A G KY D VRVV+ G S CGG HV +T I IV ES + AG+RRIE Sbjct: 630 KAQFGEKYGDTVRVVNF-----GTASIEFCGGVHVDNTATIGTFVIVKESGVSAGVRRIE 684 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV- 783 A+ G A + Q L+ + + V +V+ +E + E+ + L+ H L + Sbjct: 685 AVCGNAAYNLFKQQRHLLEEVEA--SVKNRDVLAGIERLKEQVKTLK--HEMSALASSAK 740 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 E+L+ I + +++E+ + ++K +D L+ + S ++L I +K +++ Sbjct: 741 EELAVTMIGST---AVVVAELGAGDIKERIDELKNQHDSVAVLLFQIKDDK----VLLAA 793 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A D + A +L GGGGGGRP AQ+GG + +K +A +++ K Sbjct: 794 GAKNTPLKAGDWIKTIAPIL-GGGGGGRPDFAQAGGKDASKLGEAKDAALAYVTK 847 >gi|262066712|ref|ZP_06026324.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693] gi|291379511|gb|EFE87029.1| alanine--tRNA ligase [Fusobacterium periodonticum ATCC 33693] Length = 867 Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust. Identities = 340/894 (38%), Positives = 527/894 (58%), Gaps = 62/894 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Y VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI +W+ +T+ L++ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKLNKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA ++W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 NN++ DL +++ + ++TG +Y N+ N +VI DH R+ +FL+ DG++P+NEGRG Sbjct: 239 PNNFETDLLFPILEEAARITGSQYGKNSETNFSLKVITDHARAVTFLVNDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGY + M ++ + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVTVLRE 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +K+G T+F GY+ ++ ++ K+ Sbjct: 418 -EFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYENIQ------DEAKL 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + EA G+ + ++FD+TPFYAE+GGQ+GD G Sbjct: 471 LSSR------------------------EAKDGKYL-LIFDKTPFYAESGGQVGDQGRIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H +E+G + L ++ R + NH+ATHLLH Sbjct: 506 SDDFSAKVLDVQKQKD-IFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + PD LRFD +H + +T+ +L IE+ VN+ I + + VV + Sbjct: 565 ALREVVGTHVQQAGSLVDPDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIEVVVSHHS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY + VRVV V S+ LCGGTH+ + +I L IVSE Sbjct: 625 IEEAKNLGAMMLFGDKYGEVVRVVDVPG-----FSTELCGGTHIDNIAKIGLFKIVSEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 I AG+RRIEA TG A + + LK + LK S NVV +VE+ E ++ +L Sbjct: 680 IAAGVRRIEAKTGYGAYLVEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKETERELE 739 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830 K+K+ L + + ++N + +++ K +L++++D ++ + +++L Sbjct: 740 TLKQKIALFETKAALSGMEEINGVKVLVAAFKDKKAEDLRTMIDTIKDNNEKAVVVLA-- 797 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 S + K S + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + +K Sbjct: 798 STQDKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESK 850 >gi|254303692|ref|ZP_04971050.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323884|gb|EDK89134.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 867 Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust. Identities = 350/914 (38%), Positives = 536/914 (58%), Gaps = 76/914 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ LD+ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKLDKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA ++W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAERIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 NN++ DL +++ + ++TG +Y N ++ +VI DH R+ +FL+ DG++P+NEGRG Sbjct: 239 ANNFETDLLFPILEEAAKITGSQYGKNPEIDFSLKVITDHARAVTFLVNDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGYT+ M ++ + + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYTDLFMYKMVDKVVEKFEVAYPDLRKNLENIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVTVLRE 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +KYG T+F GY+ + +++ K+ Sbjct: 418 -EFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGITKFTGYEKI------EDEGKL 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + EA G+ + ++FD+TPFYAE+GGQ+GD G Sbjct: 471 LS------------------------IREAKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H E+GI + L +D R + NH+ATHLLH Sbjct: 506 SDSFEAKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLEVDIVKRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + + LRFD +H + +T+ +L IED VN+ I + + V Sbjct: 565 ALREVVGTHVQQAGSLVDSEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVAVSHHT 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L IVSE Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYR--KLQ 771 I AG+RRIEA TG A +L+ ++E LK + LK + N+V +VE+ E R + + Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEREEANILKDIEKKLKATNINLVEKVEKTLETLRDTEKE 737 Query: 772 LIHAKRKLQL--------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L K+KL L ++E++ K+ F + +++L++++D ++ + G Sbjct: 738 LETLKQKLALFETKSAISDMEEIGGAKVLIATF-----KDKSTEDLRTMIDTIKDNNEKG 792 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 II+L S + K S + VT+ L D+ A DL + A++ GG GGGRP AQ+GG + Sbjct: 793 IIVLA--STQDKLSFAVGVTKTLTDKVKAGDLVKKLAEIT-GGKGGGRPDFAQAGGKDEG 849 Query: 884 KADQAIAGVASFLK 897 K A V ++ Sbjct: 850 KLLDAFKEVREIIE 863 >gi|319651658|ref|ZP_08005785.1| alanyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2] gi|317396725|gb|EFV77436.1| alanyl-tRNA synthetase [Bacillus sp. 2_A_57_CT2] Length = 877 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 360/917 (39%), Positives = 541/917 (58%), Gaps = 72/917 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AEIRRMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT + + Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIIWAWEFLTDKNWIGFED 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +L +T++ ED+EAFK+W++ G+ ++IIR+ NFW + E GP GP +EIF+D+G Sbjct: 123 EKLSVTIHPEDDEAFKIWREKVGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGPE 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E +RY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 180 YGNDPEDPELYPGG------ENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 MA+V+Q N+D DLF +I+ +E+++G KY + V +VI DH+R+ +F + DG Sbjct: 234 MASVVQNVPTNFDTDLFMPIIRGTEEISGKKYGASKETDVAFKVIADHIRTVAFAVGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ + EP M L+P + M YPE+ + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQININEPFMYDLVPVVGEIMHDFYPEVKEKTEFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +++E+ERF +TL GL +L V+ G I DV F+LYDT+G P+++ ++ Sbjct: 354 IKNEEERFHETLHEGLAILSSVIKKEKEKGSVTIQGADV-FRLYDTYGFPVELTEEYAEE 412 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F + +E QR RAR+ + S + L E ++F+GYD L+ Sbjct: 413 EGMK-VDHAGFEKEMEGQRERARSARQDVDSMQVQG--GVLGELKIESEFVGYDKLQ--- 466 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 ++ V AIV+ G++++EA +G++V+++ ++TPFYAE+GGQ Sbjct: 467 --------------------TAAKVAAIVKDGQLIDEAHAGEEVQLILNETPFYAESGGQ 506 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G +G+++ I DVQK G +H A++E G L+ E S++ ++D Q R ++ NH Sbjct: 507 IADQGTLKAEGLKVSIKDVQKAPNGQNLHRAVIEEGTLKAEASVLASVDEQIRSKVIKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LGSHV+Q GS + PD LRFD +H ITS EL+ IE VN+ I +L Sbjct: 567 TATHLLHQALKDVLGSHVNQAGSLVGPDRLRFDFSHFGQITSEELEKIEAIVNEQIWVSL 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V + ++A A GA AL G KY VRVV V G +S LCGG HV +T I L Sbjct: 627 DVDINFKDIDEAKAMGAMALFGEKYGKIVRVVQV-----GDYSLELCGGCHVPNTSSIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I SES I AG RRIEA+TG+ A L Q LK + LK + ++ R++ + E Sbjct: 682 FKIQSESGIGAGTRRIEAVTGEAAYKLLNDQIHVLKEASGKLKTNPKDLSSRIDVLLGEM 741 Query: 768 RKLQLIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++LQ + +L N+E S +I + ++ + D L+++ D L++K+ S Sbjct: 742 KQLQRENESLAAKLGNIEAGSLVSKAKEINGITVLAEKVQASDMNNLRNMADDLKQKLGS 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGP 880 +++L G E K +++ VT+DL+ + F+A + ++AK GGGGGRP MAQ+GG Sbjct: 802 AVVVL-GSVNEGKVNIIAGVTDDLIKKGFHAGKAVKEVAAKCG--GGGGGRPDMAQAGGK 858 Query: 881 NGNKADQAIAGVASFLK 897 + K + A+ V ++K Sbjct: 859 DPEKLESALQFVEEWVK 875 >gi|27468219|ref|NP_764856.1| alanyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228] gi|57867101|ref|YP_188758.1| alanyl-tRNA synthetase [Staphylococcus epidermidis RP62A] gi|251811025|ref|ZP_04825498.1| alanyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|282875956|ref|ZP_06284823.1| alanine--tRNA ligase [Staphylococcus epidermidis SK135] gi|33301694|sp|Q8CSA7|SYA_STAES RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71153555|sp|Q5HNT2|SYA_STAEQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|27315765|gb|AAO04900.1|AE016748_134 alanyl-tRNA synthetase [Staphylococcus epidermidis ATCC 12228] gi|57637759|gb|AAW54547.1| alanyl-tRNA synthetase [Staphylococcus epidermidis RP62A] gi|251805443|gb|EES58100.1| alanyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060] gi|281294981|gb|EFA87508.1| alanine--tRNA ligase [Staphylococcus epidermidis SK135] Length = 876 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 351/923 (38%), Positives = 523/923 (56%), Gaps = 85/923 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T++ ED EAF++W + GL +IIRI NFW + E GP GP +EIF+D+G Sbjct: 123 EKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGSA 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGKDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I+ E V+G KY + V +VI DH+R+ SF IADG Sbjct: 234 MTSISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ D+++ G AFKLYDT+G P+++ +++ Sbjct: 354 IKSEEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQEN 413 Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L+ +D+ +F Q +++QR RAR + S+ + S LK +QF+GY+ Sbjct: 414 LS-VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV-------LKNIQDESQFVGYE--- 462 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 T S++ I+ GE V+ +G+ + + +TPFYA + Sbjct: 463 --------------------TTDYQSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVS 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G + + +TDV K G +H IV+ G + ++ ++RR + Sbjct: 503 GGQVADKGTVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQ 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV+Q GS + P+ LRFD +H P+T E+ +E VN+ I Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIW 622 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V + M+ E+A + GA AL G KY D VRVV++ S LCGG HV++T E Sbjct: 623 RAIDVRIQEMSIEEAKSIGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTAE 677 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEI 763 I L IVSES AG+RRIEA+TG+ A HL + + ++ + LKV N VV +V+++ Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQL 737 Query: 764 WEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMD 814 EE + L +R ++ N+E+ ++ +N + + +EV+ K ++S MD Sbjct: 738 QEEEKGLLKQLEQRNKEITSLKMGNIEE----QVELINNLKVLATEVEIPNPKAIRSTMD 793 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + K+Q II+LVG + K SV+ V + L ++ A DL + ++ GG GGGRP M Sbjct: 794 DFKSKLQDTIIVLVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDM 851 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 AQ GG K +A+ + ++K Sbjct: 852 AQGGGTQPEKITEALRFIKDYIK 874 >gi|251773418|gb|EES53967.1| alanyl-tRNA synthetase [Leptospirillum ferrodiazotrophum] Length = 884 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 344/873 (39%), Positives = 482/873 (55%), Gaps = 53/873 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +F FF+ GH +PSSSLIP DPTL+FTN+GMVPFK+ F G E P ++Q+ Sbjct: 6 IRNSFHGFFEGVGHRRVPSSSLIPPGDPTLLFTNAGMVPFKDAFLGTEPPPAPRCVSIQR 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVRAGGKHNDLD VG T RHHTFFEM+GNFSFG YFK+ AI AW+ LTK L L+ Sbjct: 66 CVRAGGKHNDLDRVGFTRRHHTFFEMMGNFSFGDYFKKEAIAFAWEYLTKTLGLSPSVLW 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TV+ +D+EA LW+ ++G+ +I+R+ DNFW M TGPCGPCSEI DQG G Sbjct: 126 VTVFTDDDEAASLWQSVAGVDPSRIVRLGEKDNFWQMGNTGPCGPCSEILVDQGSAFSCG 185 Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P + + +RY+EIWNLVFMQ+++ + LP+ SIDTGMGLER+A+VLQ +N+ Sbjct: 186 RPTCAVGCDCDRYLEIWNLVFMQYDRNDAGILTPLPRPSIDTGMGLERLASVLQGSQSNF 245 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DLF L++A + T + Y +G +RVI DH+R+S+FL+ +G++P+NEGRGYVL Sbjct: 246 ETDLFLPLMEAIGKKTRIPYGRGQGEKDFAYRVIADHVRASTFLVWEGLVPSNEGRGYVL 305 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR +RRAM ++ L P + L M + YPEL + L SE+ERF KT Sbjct: 306 RRFIRRAMQFSLDLALPTPFLPDLSRRFAELMAAPYPELAAGMDRVVTVLASEEERFMKT 365 Query: 362 LDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+ GL L+ + + + +L G+ F LYDTHGLP+D++ D G+ +D F Sbjct: 366 LETGLPLVQELARSARERGETVLTGEELFWLYDTHGLPVDVVGDWAAPLGVT-LDTEGFA 424 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GATQFIGYDLLRGSKFMKEDRKVLC 477 + EQ+ + R S T + F L +F GY+ L + Sbjct: 425 VRMGEQKEQGRR------SWTGSRASFPLPASRLSSPVRFEGYERLESPARL-------- 470 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + L +G S V+ G+++ V D +PFY E GGQ+GD G + Sbjct: 471 ----LLLASGESE-----------VQSVREGEEIWAVTDVSPFYPEGGGQVGDQGRLVAP 515 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G + I+ + G V G++ ++ L +D R ++H+ATHLLH AL Sbjct: 516 GGIVSISGAYRPYPGWIALRGKVLSGVVTQGETVQLQVDRSLRLGARVHHTATHLLHAAL 575 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHV Q GS + PD LRFD +H PIT +++ IE VN I + PV N+ Sbjct: 576 RKVLGSHVRQAGSLVLPDRLRFDFSHGAPITDGQIEEIEGMVNRWIGEGAPVEISEKNKA 635 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 DA+ASGA A KY DRVRVV + S LCGGTH ST EI +I+SES + Sbjct: 636 DALASGAMAFFDEKYGDRVRVVEIPG-----MSVELCGGTHALSTSEIGSFFILSESGVA 690 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG RRIEA+ G A G +L +A LKVS G ++ R+ E +++ ++ Sbjct: 691 AGTRRIEAVAGAAATRTAAGWRAELHRIAGDLKVSPGRILDRIAAEKREREEIEKELSRS 750 Query: 778 KLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L DL + D V + ++ D +L+ MD L+ +I SG ++L G Sbjct: 751 KSRLF--DLETQSLLDESMMVGEVRILVAVVESRDLADLRLRMDVLKGRIPSGAVILAGK 808 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 + + + +L T DL F R A+ L Sbjct: 809 AGDDRVLLLGWATPDLEKTFPVNTWVRSMAQTL 841 >gi|260587849|ref|ZP_05853762.1| alanine--tRNA ligase [Blautia hansenii DSM 20583] gi|260542114|gb|EEX22683.1| alanine--tRNA ligase [Blautia hansenii DSM 20583] Length = 892 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 364/908 (40%), Positives = 524/908 (57%), Gaps = 54/908 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ H + S SL+P ND +L+ NSGM P K FTG E P + VTT Sbjct: 19 VNELRKMFLEFFESKEHLAMKSFSLVPRNDKSLLLINSGMAPLKPYFTGAEIPPRRRVTT 78 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD + Sbjct: 79 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIAWSWEFLTEVVGLDPQ 134 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y+EDEEAF++W K G+ A++I R DNFW GPCGPCSEI++D+GE Sbjct: 135 RLYPSIYEEDEEAFEIWNKEMGIPAERIFRFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 193 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QFE + L + +IDTGMGLER+A+V+Q+ Sbjct: 194 GCGSPDCTVGCECDRYMEIWNNVFTQFESDGEGNYTELVQKNIDTGMGLERLASVVQDVD 253 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D L ++ +Y+ + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 254 SIFDVDTLCALRTKVCELAHTEYKKDAAKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 313 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + K I + L E+E+F Sbjct: 314 VLRRLIRRAARHGRLLGIEGKFLAELSAVVIEGSKDGYPELEEKKDFIFQVLTKEEEQFN 373 Query: 360 KTLDRGLVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 KT+D+GL +L + + GK E L+G+ AFKLYDT+G PLD+ ++IL +G ID Sbjct: 374 KTIDQGLNILSEMEAAMKAEGKTE-LSGEAAFKLYDTYGFPLDLTKEILEEKGCT-IDEA 431 Query: 417 SFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F A++EQR +AR A S G ++ + T+F+GYD L Sbjct: 432 GFKAAMDEQREKARIARSTTNYMGADATVYDEIDVNV-TTEFVGYDSLT----------- 479 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-A 534 +S + + + EI E Q+ V +QTPFYA GGQ GD G Sbjct: 480 ------------CTSKITVLTTEDEITEALTEDQRGTVFVEQTPFYATMGGQQGDKGVIT 527 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +GD ++ D G H ++ +G+L+T + L + + R NHSATHLL Sbjct: 528 LGDA-EFKVEDTINLRGGKVGHVGVLTKGMLKTGDVVTLQVCEKYRMNSCKNHSATHLLQ 586 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL T+LGSHV Q GS +TPD LRFD H + +T+ EL ++E+ VN I LPVVT +M Sbjct: 587 KALKTVLGSHVEQKGSLVTPDRLRFDFAHFQSMTAEELAAVEEIVNKEIQAALPVVTEVM 646 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A GA AL G KY + VRVVS+ G S LCGGTHVS+TG I I+SES Sbjct: 647 SIEEAKKVGAMALFGEKYGEEVRVVSM-----GDFSKELCGGTHVSNTGVITTFKIISES 701 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG ++ ++K +A+ LK S + ++ + E + L + Sbjct: 702 GIAAGVRRIEALTGDGVFAYYKEIEKKQAEIAAMLKTSPSEIEEKIAHLQAEVKALHSEN 761 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K ++ E + + V ++ +++VD L+ + D L++K+ G+++L Sbjct: 762 ESLKAKMAQEAVGDVLNQVQDVKGVKLLAVSLTDVDMNGLRDLGDQLKEKLGEGVVVLAS 821 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ K S+L +VTE +A +L + A ++ GGGGGGRP+MAQ+GG N +K +A Sbjct: 822 VAG-GKVSLLAMVTEQAQKAGAHAGNLIKGMAAIV-GGGGGGRPNMAQAGGKNPDKVPEA 879 Query: 889 IAGVASFL 896 + A+ L Sbjct: 880 LEAAANIL 887 >gi|288555383|ref|YP_003427318.1| alanyl-tRNA synthetase [Bacillus pseudofirmus OF4] gi|288546543|gb|ADC50426.1| alanyl-tRNA synthetase [Bacillus pseudofirmus OF4] Length = 879 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 358/918 (38%), Positives = 530/918 (57%), Gaps = 73/918 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF++ GH++ PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQVRQMYLDFFKEKGHDIEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT E D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSEKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +L +TV+ ED EA+ W K G+ ++IIR+ NFW + E GP GP +EIF+D+G Sbjct: 123 EKLSVTVHPEDNEAYDYWAKNIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGPS 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 180 YGDDANDPELYPGG------ENERYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M +V+Q+ N++ DLF +IQA+EQ+T +KY + V +VI DH+R+ +F + DG Sbjct: 234 MVSVIQDTKTNFETDLFMPIIQATEQLTSVKYGADTETDVAFKVIADHVRTVTFAVGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+L+G P M L+P + M YPE+ + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKLIGIDRPFMYELVPVVGEIMVDFYPEVKEKTEFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GK-DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +LD +L+ GK +E+++G F+LYDT+G P+D+ ++ + + Sbjct: 354 MKTEEERFHETLNEGLGILDKILAEAKGKNEEVISGSDVFRLYDTYGFPVDLTEEYVEEK 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL ID F +E+QRSRARA GS + L E + F+GY+ L Sbjct: 414 GLT-IDRDGFEVEMEQQRSRARAARQESGSMQVQDEL--LGEINAESTFVGYNQL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V ++ E + +G+ +V+ TPFYAE+GGQ+ Sbjct: 466 ------------------SAEGTVSVLIAGKERMSSVPAGETAQVILSTTPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG +G+G+ ++T+V K G +H +VE G L+ +++ T++ +R + NH+ Sbjct: 508 ADTGTIVGEGVIARVTEVTKAPNGQHLHTVVVEEGELKEGVTVTSTVEETSRIGIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS ++ D LRFD +H +T EL IE+ VN+ + + Sbjct: 568 ATHLLHQALKDVLGVHVNQAGSLVSEDRLRFDFSHFGQVTKEELTKIEEIVNEKVWNAIS 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V +A GA AL G KY D VRVV V G +S LCGG HV +T EI L Sbjct: 628 VDISEKKLAEAKEMGAMALFGEKYGDTVRVVQV-----GDYSLELCGGCHVRNTAEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 +VSES I AG+RRIEA+TGQ A + Q L + + +K +V R+E + ++ Sbjct: 683 KVVSESGIGAGVRRIEAVTGQGAYEFMNDQLRLLTTASELVKAKNVKDVPARIEAMQQQI 742 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKI 820 R LQ L + ++ + D V +S ++ D L++++D L++ + Sbjct: 743 RDLQ--RENESLSSKLGNMEAGNLIDEAVEVNGVKVLSKEVNASDMDGLRAIVDKLKQDL 800 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 SG+I+L +S E K +++ VT+DL+ + +A L + A GGGGGGRP MAQ+GG Sbjct: 801 DSGVIVLGAVSGE-KVNLVAGVTKDLISQGHHAGKLVKEVASRC-GGGGGGRPDMAQAGG 858 Query: 880 PNGNKADQAIAGVASFLK 897 + +A+A V F+K Sbjct: 859 KKPEQLAEALAYVPEFVK 876 >gi|319957309|ref|YP_004168572.1| alanyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511] gi|319419713|gb|ADV46823.1| alanyl-tRNA synthetase [Nitratifractor salsuginis DSM 16511] Length = 859 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 349/900 (38%), Positives = 522/900 (58%), Gaps = 62/900 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-PVYQAVTTVQ 65 IR +L++F + GH ++PSS L+P +DPTL+FTN+GMV FK+IFTG+ P T+ Q Sbjct: 3 IRKMYLDYFAQRGHRVVPSSPLVP-DDPTLLFTNAGMVQFKSIFTGEAPIPNPPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQR 123 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ +T E L Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKKEAIAFAWEFVTGEEYLALPVE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-EC 182 ++++TV++ D+EA+++WK+ ++ ++I R DNFW M +TGPCGPCSEIF+DQG E Sbjct: 122 KIWVTVHESDDEAYEIWKE--HIAEERIKRFGDKDNFWQMGDTGPCGPCSEIFYDQGAEH 179 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G +G+R++EIWNLVFMQ+E+ E LPK SIDTGMGLER+ + + N Sbjct: 180 FNGPEDYMGGDGDRFLEIWNLVFMQYERDETGELHPLPKPSIDTGMGLERVVAIKEGVFN 239 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYD LFK LI A ++ G I ++RVI DHLRS++FL+A G+ EGRGYVLR Sbjct: 240 NYDSSLFKPLIDAITEIVGKAPTEETIASYRVIADHLRSTTFLLAQGVNFDKEGRGYVLR 299 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RIMRRA+ + LLG EP M L+ L +MG Y L + ++ ++ E+ERF +T+ Sbjct: 300 RIMRRAIRHGYLLGLREPFMHRLVDTLVEQMGGHYDYLPKRAEAVKTAMKMEEERFFETI 359 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 + G+ L + L ++ +G+VAFKLYDT+G PLD+ QD+L +G+ +D+ +F + Sbjct: 360 EAGIKLFNEELQRT--KDVFSGEVAFKLYDTYGFPLDLTQDMLREKGIE-LDMATFEGKM 416 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EQ++++RA G G + +L+E++G +F+GY Sbjct: 417 AEQKAKSRAAWKGSGDAAVSGDFKALEERHGPNRFVGY---------------------- 454 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVE----VVFDQTPFYAEAGGQLGDTG--CAIG 536 + T+ + IV + + + V QK+E V+ D TPFYAE+GGQ+GD G Sbjct: 455 EETDTKTRIVALLDENFKEV------QKLEGLGWVMLDPTPFYAESGGQVGDRGELVVWS 508 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 G +++ D +K + + + E L + +D +RRQ++ +HSATHLLH A Sbjct: 509 GGPNVKVLDT-RKFHALNLSYVDTEGNTLEVGQEVEALVD-DSRRQIAKHHSATHLLHAA 566 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS + LRFD TH K +++ EL+ +E VN+++ + + +++ Sbjct: 567 LREVLGEHVTQAGSLVEATRLRFDFTHPKALSAEELQKVEHWVNEVVDRAIEGEVKVLPI 626 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A GA AL G KY D VRVV G S LCGGTHV +T E+ L I ES + Sbjct: 627 EEAKKEGAMALFGEKYGDEVRVVRF-----GDASVELCGGTHVRNTAEVGLFAITKESGV 681 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+ G+ + + K + +K + + + ++ E+ + L+ Sbjct: 682 SAGVRRIEAVCGKESAKLFDHLRRERKEIVEAVKNPE--PLAGIAKLKEQIKTLK-SELD 738 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 L ++L+ KI D+ I+ EV + ++K ++D ++ + + +ML +KK Sbjct: 739 AALAGGAKELAEEKIGDITV---IVDEVKAGDIKKMIDEIKNRHEKVAVMLF----QKKG 791 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +++ A D + A +L GGGGGGRP AQ+GG N K +A+ +L Sbjct: 792 DKVLLAAGSKNTPVKAGDWIKEVAPIL-GGGGGGRPDFAQAGGKNPEKIPEAMRAAKGYL 850 >gi|260494135|ref|ZP_05814266.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_33] gi|260198281|gb|EEW95797.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_33] Length = 867 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 344/894 (38%), Positives = 524/894 (58%), Gaps = 62/894 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ +D+ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKIDKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 TNN++ DL +++ + ++TG +Y N+ + +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 TNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGMQLVNQEIDNLLTNGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVTVLR- 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +KYG T+F GY+ ED Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYE-------KTEDEGK 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + EA G+ + ++FD+TPFYAE+GGQ+GD G Sbjct: 470 LLS-----------------------LREAKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H E+GI + L +D R + NH+ATHLLH Sbjct: 506 SDNFIGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLEVDIVRRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IED VN+ I + + V + Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGIEVNISHHS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L IVSES Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVP-----GFSTELCGGTHIDNIGKIGLFKIVSESG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773 I AG+RRIEA TG A + + LK + LK + N++ +VE+ E + + +L Sbjct: 680 IAAGVRRIEAKTGYGAYLVEKTEADILKDIEKKLKATNSNLIEKVEKTLETLKDTEKELE 739 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830 K+KL L + + ++ +++ K +L++++D ++ + + II+L Sbjct: 740 ALKQKLALFETKAAISGMEEIGGAKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA-- 797 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 S + K + + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + K Sbjct: 798 STQDKLAFAVGVTKTLTDKIKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEK 850 >gi|293366424|ref|ZP_06613102.1| alanine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|291319458|gb|EFE59826.1| alanine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)] gi|329735187|gb|EGG71479.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU045] Length = 876 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 351/923 (38%), Positives = 522/923 (56%), Gaps = 85/923 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLNFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T++ ED EAF++W + GL +IIRI NFW + E GP GP +EIF+D+G Sbjct: 123 EKLYVTIHPEDTEAFRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGSA 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGKDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I+ E V+G KY + V +VI DH+R+ SF IADG Sbjct: 234 MTSISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSNFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ D+++ G AFKLYDT+G P+++ +++ Sbjct: 354 IKSEEERFHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQEN 413 Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L+ +D+ +F Q +++QR RAR + S+ + S LK +QF+GY+ Sbjct: 414 LS-VDMPTFEQEMQQQRDRARQARQNSQSMQVQSEV-------LKNIQDESQFVGYE--- 462 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 T S++ I+ GE V+ +G+ + + +TPFYA + Sbjct: 463 --------------------TTDYQSLITHIIYNGEEVKHVEAGETIYFILRETPFYAVS 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G + + +TDV K G +H IV+ G + ++ ++RR + Sbjct: 503 GGQVADKGTVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQ 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV+Q GS + P+ LRFD +H P+T E+ +E VN+ I Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIW 622 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V + M+ E+A + GA AL G KY D VRVV++ S LCGG HV++T E Sbjct: 623 RAIDVRIQEMSIEEAKSIGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTAE 677 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEI 763 I L IVSES AG+RRIEA+TG+ A HL + + ++ + LKV N VV +V+++ Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKGAFLHLEEIETQFNNIKNHLKVKSDNQVVEKVKQL 737 Query: 764 WEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMD 814 EE + L +R ++ N+E+ ++ +N + + +EV+ K ++S MD Sbjct: 738 QEEEKGLLKQLEQRNKEITSLKMGNIEE----QVELINNLKVLATEVEIPNPKAIRSTMD 793 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + K+Q II+LVG + K SV+ V + L ++ A DL + ++ GG GGGRP M Sbjct: 794 DFKSKLQDTIIVLVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDM 851 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 AQ GG K +A+ + ++K Sbjct: 852 AQGGGTQPEKITEALRFIKDYIK 874 >gi|91202499|emb|CAJ72138.1| strongly similar to alanyl-tRNA synthetase [Candidatus Kuenenia stuttgartiensis] Length = 885 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 355/910 (39%), Positives = 520/910 (57%), Gaps = 65/910 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N IR FL FF+K H + P SL+P D TL+FT +GM FK++F G+ + + T Sbjct: 2 NTGEIRNKFLTFFEKKSHVIWPGDSLVPQGDATLLFTGAGMNQFKDMFLGKGRLNIKRAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R G DL+NVGRT HHTFFEMLGNFSFG YFK I AW+ L +E L + Sbjct: 62 TCQKCLRTG----DLENVGRTASHHTFFEMLGNFSFGDYFKRETIAWAWEFLVQELRLPE 117 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIFF 177 +L+++VY +D E++++W+K + KI NDNFW + GPCGPCSEIF+ Sbjct: 118 EKLFVSVYKDDPESYEIWEKHIRILKSKIYSYGENDNFWPANAPAQGPNGPCGPCSEIFY 177 Query: 178 DQG--------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 DQG EC P + +R++EIWNLVF QF+++ LP ++DTGMG Sbjct: 178 DQGAGVGCGREECEPAC------DCDRFVEIWNLVFTQFDRKEDGRLEPLPNKNVDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIA 287 LERMA V+Q N+DID+F +I++ E +T ++Y + N V R I DH+++S F IA Sbjct: 232 LERMARVMQGVPTNFDIDIFAPVIKSIEDITHLRYHDKKENAVCMRRIADHVKASIFCIA 291 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+LP NEGRGYV RR++RRA+ LG E + L+P + M YP++ Q + I Sbjct: 292 DGVLPGNEGRGYVERRLLRRAIRDGAQLGLKECFLYKLVPIISDLMQDYYPDIKQRRENI 351 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDIL 405 ++SE+E+F +TL+ G V L ++ + K++I L G AFKLYDT+G PLD+ + IL Sbjct: 352 ARIIKSEEEKFLETLELGTVRLKELMDTMQKNKIKELPGKEAFKLYDTYGFPLDMTELIL 411 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G + +D L+ QR +AR+ S G +KE T F+GY+ Sbjct: 412 KEHGFS-MDSAGVEVELKRQRMQARSSSSMTGQVFDAGFLGKIKEISKGTTFLGYE---- 466 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 K C+ I AIVQ ++E+A +G +V +V DQTPFY E+G Sbjct: 467 --------KDSCRARII-----------AIVQGDYLIEKAEAGSEVSIVLDQTPFYGESG 507 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GDTG +G + ITD KK + +H + +GI+RT + ID R + Sbjct: 508 GQIGDTGILESEGSHICITDT-KKNDSFIIHIGKITKGIVRTGDMIDARIDTHRRGLIKR 566 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATH+LH L ++G H Q GS ++PD LRFD H +T E+ IED VN+ I + Sbjct: 567 NHTATHVLHWVLRNVIGRHAEQAGSMVSPDRLRFDFHHFSSLTKEEINRIEDLVNEKIME 626 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N V + ++A +GA AL G KY +RVR+VS+ G S LCGGTH+++TGEI Sbjct: 627 NALVSVKEQTLQEARNAGAVALFGEKYEERVRMVSI-----GDFSKELCGGTHINNTGEI 681 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 IV ESS+ AGIRRIEAITG A + ++E ++ L L + ++ + +E+ Sbjct: 682 GPFRIVGESSVAAGIRRIEAITGISALTRDREKEEIVQELCGILNACEEDLSSKTQELLN 741 Query: 766 EYRKL-QLIHAKRKLQL--NVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E +KL + +H +++ +L ++ LS +++ VN ++ I + +++ D L K Sbjct: 742 EVKKLHKELHKQKQKELLEKIDSLSVTAKEVSGVNIITKRIDNASADDMRRTADMLMKSE 801 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + + L G + V+I ++ L R +A +++ AK++ GGGGGGRP MAQ+GG Sbjct: 802 KETAVAL-GSVLNGRVIVIISLSTGLASRGLHAGSISKEVAKIV-GGGGGGRPEMAQAGG 859 Query: 880 PNGNKADQAI 889 K D+A+ Sbjct: 860 QVVGKLDEAL 869 >gi|319400948|gb|EFV89167.1| alanyl-tRNA synthetase [Staphylococcus epidermidis FRI909] Length = 876 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 349/920 (37%), Positives = 521/920 (56%), Gaps = 79/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T++ ED EA+++W + GL +IIRI NFW + E GP GP +EIF+D+G Sbjct: 123 EKLYVTIHPEDTEAYRIWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGSD 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGNDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I+ E V+G KY + V +VI DH+R+ +F IADG Sbjct: 234 MTSISQNVRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTIAFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSHFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ ++++ G AFKLYDT+G P+++ +++ Sbjct: 354 IKSEEERFHETLEEGLTILNELIKEAKNSNQVIKGHDAFKLYDTYGFPIELTEELATQEK 413 Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L+ +D+ +F Q +++QR RAR + S+ + S LK +QF+GY+ Sbjct: 414 LS-VDMSTFEQEMQQQRDRARQARQNSQSMQVQSEV-------LKNIQDDSQFVGYE--- 462 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 T S++ I+ GE V+ A +G+ + + +TPFYA + Sbjct: 463 --------------------TTDYQSLITHIIYNGEEVKHAEAGETIYFILRETPFYAVS 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G + + +TDV K G +H IV+ G + ++ ++RR + Sbjct: 503 GGQVADKGTVGNESFEINVTDVTKAPNGQNLHKGIVQFGEATQNAKVEARVNKEDRRLIQ 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV+Q GS + P+ LRFD +H P+T E+ +E VN+ I Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFDFSHFGPMTQEEINLVERRVNEEIW 622 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V + M+ E+A + GA AL G KY D VRVV++ S LCGG HV++T E Sbjct: 623 RAIDVRIQEMSIEEAKSIGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTAE 677 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEI 763 I L IVSES AG+RRIEA+TG+ A HL + + ++ + LKV N VV +V+++ Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKGAFLHLEEIETQFNTIKNHLKVKSDNQVVEKVKQL 737 Query: 764 WEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +E + L +R ++ N+E+ I +V ++ + D K ++S MD + Sbjct: 738 QDEEKGLLKQLEQRNKEITSLKMGNIEE-QVELINNVKVLATEVEIPDPKAIRSTMDDFK 796 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K+Q II+LVG + K SV+ V + L ++ A DL + ++ GG GGGRP MAQ Sbjct: 797 SKLQDTIIVLVG-QVDGKVSVIATVPKSLTNQVKAGDLIKNMTPII-GGKGGGRPDMAQG 854 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG K +A+ + ++K Sbjct: 855 GGTQPEKITEALRFIKDYIK 874 >gi|160880749|ref|YP_001559717.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg] gi|205829959|sp|A9KMW7|SYA1_CLOPH RecName: Full=Alanyl-tRNA synthetase 1; AltName: Full=Alanine--tRNA ligase 1; Short=AlaRS 1 gi|160429415|gb|ABX42978.1| alanyl-tRNA synthetase [Clostridium phytofermentans ISDg] Length = 879 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 357/906 (39%), Positives = 516/906 (56%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R +L+FF+ GH L S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMYLDFFESKGHLKLNSFSLVPQNDKSLLLINSGMAPLKPYFTGQEIPPKKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI +W+ LT+ L Sbjct: 66 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVVGLSGD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y ED+EAF +W K G++ ++I R+ DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSIYLEDDEAFDIWNKEVGIAPERIFRMGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +R+IE+WN VF QF L +IDTGMGLER+A V+Q+ Sbjct: 181 GCGDPNCTVGCECDRFIEVWNNVFTQFNSDGNGNYEELENKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +DID K + ++ +Y + ++ R+I DH+RS +F+ +DGI+P+NEGRGY Sbjct: 241 TLFDIDTMKAIRDHVCKMANAEYKVDPKKDMSIRLITDHIRSVTFMTSDGIIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + E YPEL + K I + L E+E+F Sbjct: 301 VLRRLLRRAARHGRLLGIQGKFLAELSKTVIAESKDGYPELEEKKEYILKVLTIEEEKFN 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + L + + LNG+ AFKLYDT+G PLD+ ++IL +G + ID Sbjct: 361 KTIDQGLSILSEMEEALVSNGTKTLNGEDAFKLYDTYGFPLDLTKEILEEKGFS-IDEEG 419 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F +A++ QR AR A ++ G I+ + + F+GYD R S Sbjct: 420 FKKAMQVQRETARSARAVTNYMGADASIYDEIDPAI-TSNFVGYD--RTSH--------- 467 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 +S + + + ++ +E V GQ ++ D+TPFYA GGQ D G +G Sbjct: 468 ------------TSKISVLTTETDLTDEVVGGQTATIIVDETPFYATMGGQTADIGFIVG 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++ D K G H V +G + ++ LTID Q R+ + NHSATHLL A Sbjct: 516 KDAEFEVEDTIKLKGGRVGHLGTVTKGSFKVGETVTLTIDTQKRQAIGKNHSATHLLQKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LGSHV Q GS +T + LRFD TH +T E+ +E VN+ IA+N+PVVT +M+ Sbjct: 576 LRNVLGSHVEQAGSFVTSERLRFDFTHFSALTKEEIAKVEAMVNEEIAKNVPVVTDVMSV 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 EDA SGA AL G KY D VRVV++ G S LCGGTHV++TG I + I+SE+ I Sbjct: 636 EDAKKSGAMALFGEKYGDSVRVVTM-----GDFSKELCGGTHVANTGSITVFKILSEAGI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEAIT + +E+L A K ++V R+E + EE + + K Sbjct: 691 AAGVRRIEAITSNAVFEYYKSMEEELHEAAKVAKTEPASLVKRIESLQEELKTALSENEK 750 Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L L ++ V ++ +++ D L+++ D L++K+ +I+L S Sbjct: 751 LKAKLANNSLGDVMNQVVEVKGVKLLASKVTDADMNGLRNLGDQLKEKLGECVILLASAS 810 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 ++K + + + +A +L + A VL GGGGGGRP+MAQ+GG N + D AI Sbjct: 811 EDKVNLIAMATDGAMAKGAHAGNLIKEVA-VLVGGGGGGRPNMAQAGGKNPSGIDAAIEK 869 Query: 892 VASFLK 897 S ++ Sbjct: 870 AVSVVE 875 >gi|310658795|ref|YP_003936516.1| alanyl-tRNA synthetase [Clostridium sticklandii DSM 519] gi|308825573|emb|CBH21611.1| alanyl-tRNA synthetase [Clostridium sticklandii] Length = 882 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 348/914 (38%), Positives = 537/914 (58%), Gaps = 62/914 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ IR +L FF+ H S SL+P ND +L+ N+GM P KN F G E P + + T Sbjct: 6 VNEIREKYLSFFRSKDHYSRSSFSLVPENDKSLLLINAGMAPMKNYFMGLETPPNKRMAT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T RH TFFEMLGNFSFG YFK+ AI AW+ +TK+ +L+ Sbjct: 66 CQKCVRTG----DIENVGKTARHATFFEMLGNFSFGDYFKKEAIAWAWEFVTKDLELNPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGE- 181 L++TVY ED+EAF +W+K + ++I+R+ DNFW + TGPCGPCSEI+ D+G+ Sbjct: 122 DLWVTVYLEDDEAFDIWEKDINVPKERIVRLGKEDNFWEIGTGTGPCGPCSEIYIDRGKE 181 Query: 182 --CI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 C P PG + +R++E WNLVF QF + LP +IDTGMGLERMA ++Q Sbjct: 182 FGCSDPDCKPGC--DCDRFLEFWNLVFTQFNKDEDGNYNPLPNPNIDTGMGLERMACIMQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 + +DID K + +++G +Y V+ R+I DH R+ +FLI+DG+LP+NEG Sbjct: 240 GVDSIFDIDTMKSIRDNVCELSGKEYGKSTETDVSIRLITDHSRAVTFLISDGVLPSNEG 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + RLLG ++ L+ + G AYP+L++ K I++ L E+E Sbjct: 300 RGYVLRRLIRRAARHGRLLGIKNNFLVKLMETVIENYGEAYPDLVEKKEYIKKILTVEEE 359 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F +TLD+G+V+L + + + ++L+G+ AF+LYDT+G P+++ +I+ GL +D Sbjct: 360 KFSETLDQGMVILKEYMDKIKSESKDVLSGEDAFRLYDTYGFPIELTLEIVEEYGLK-VD 418 Query: 415 IISFNQALEEQRSRARAHSLGLG----SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 F +++Q+ RAR+ G T + + FS+++ +FIGY+ L S +K Sbjct: 419 EDGFKAEMQKQKERARSARTDKGVEGWKETADTLTFSIEK----NEFIGYNELEASAQIK 474 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + ++ ID+ + GQ E+VF++TPFYAE+GGQ+ D Sbjct: 475 D---IIFDNQKIDILS--------------------EGQAGELVFEKTPFYAESGGQVAD 511 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + ++ DVQK G+F+H V G + L +D + R+ NH+ T Sbjct: 512 KGIVKSENFVAEVKDVQKSHNGLFIHRVEVVSGEAKLSDKCELVVDEKLRKSTQRNHTCT 571 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG+H+ Q GS ++ LRFD TH +PITS +L IE+ VN+ I + PV Sbjct: 572 HLLHKALRQVLGAHIHQAGSLVSDTRLRFDFTHFEPITSEQLSQIENMVNEAIFKAYPVK 631 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 +MN E+A SGA AL KY D VRVVSV G S+ LCGGTHVS++ +I + I Sbjct: 632 VEVMNIEEAKKSGAMALFDEKYEDNVRVVSV-----GEFSTELCGGTHVSNSSDIGMFKI 686 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SES I +G+RRIEAITG +L+ ++ L + S +K ++ N+V ++ + E+Y+ Sbjct: 687 LSESGIASGVRRIEAITGSNVYQYLLEKEAVLDEIKSLVKSNEDNLVIKLSQTIEDYKTA 746 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q +K K ++ ++ I + ++ ++D + L++V + + KI++ ++ Sbjct: 747 QKELSKLKSEIAKNQINEILEGAKDIDGIKYVYSSFEDLDDETLRNVAENVIDKIENSVV 806 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGN 883 +L E K S + +V++ L + V + +V L GGGGGG+P+MAQ+GG + + Sbjct: 807 LLSSYF-ENKISFVCMVSKGALQK--GVHAGKFIKEVSSLTGGGGGGKPNMAQAGGKDIS 863 Query: 884 KADQAIAGVASFLK 897 K +A+ + LK Sbjct: 864 KLGEAMKQSETILK 877 >gi|300854401|ref|YP_003779385.1| alanyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528] gi|300434516|gb|ADK14283.1| alanyl-tRNA synthetase [Clostridium ljungdahlii DSM 13528] Length = 879 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 346/916 (37%), Positives = 534/916 (58%), Gaps = 66/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+K GH +PS SL+P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNQIREMYLSFFEKKGHLRMPSFSLVPNNDKSLLLINAGMAPLKPYFTGLKVPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFKE I AW+ T + + Sbjct: 66 CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEVIPWAWEFTTDVLKIPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY+T+Y +D+EA+ +W K + + +I R+ DNFW GPCGPCSEI +D+GE Sbjct: 122 KLYVTIYLDDDEAYDIWVKKTDIDPSRIFRLGKEDNFWEHG-AGPCGPCSEIHYDRGE-- 178 Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G + E + +R +E WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 179 -GKITTVDEFVKAGDSDRVVEFWNLVFTQFDKDEEGNYNKLSHPNIDTGMGLERMATIMQ 237 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 K + +++D +++ + G++Y N + ++ R+I DH+RS +F+I+DGILP+NEG Sbjct: 238 GKNSIFEVDTINSILKEVSNMAGIEYSKNEKSDMSMRIITDHVRSVTFMISDGILPSNEG 297 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + + LG E + L + YPEL + + I++ ++ E+E Sbjct: 298 RGYVLRRLLRRAAKHGKSLGIKEGFLYKLTEVVINNSCGNYPELKEKEEYIKKIIKLEEE 357 Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +T+D G+ +L+ +S L K+ +L G+ AFKLYDT+G P+++ Q+IL +G+ +D Sbjct: 358 RFDETIDSGMQILNDFISDLKSNKNTVLEGEKAFKLYDTYGFPIELTQEILEEKGMT-VD 416 Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + FNQ +++QR RAR+ + +G + KI F + T F GYD L+ S Sbjct: 417 LDEFNQNMKDQRERARSARAETNYMGAENTVLNKIPFEIN-----TVFEGYDRLKSS--- 468 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S VK IV+ E V G++ ++ TPFYAE GGQ+G Sbjct: 469 --------------------SKVKLIVKDEEFVSVLNEGEEGVIITANTPFYAEMGGQVG 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + + ++ D +K G +H V G + E ++ L++D R + NH+A Sbjct: 509 DKGTVFSENFKGEVLDCKKNLAGKVLHFVKVISGSINLEDTIELSVDEDRRSNIRKNHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL +LG V Q+GS + LRFD H + ++ +L++IE+ VN+ I + PV Sbjct: 569 THLLDSALKQVLGEQVHQSGSYVDESRLRFDFNHFEAVSYEKLRNIENLVNESIMKVYPV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T IM+ E+A SGA AL KY D VRVVSV G S LCGGTHVS++GEI L Sbjct: 629 KTTIMSLEEAKESGAIALFDNKYKDEVRVVSV-----GNFSKELCGGTHVSNSGEIGLFK 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR--VEEIWEEY 767 I SE+ I AGIRRIEA+TG+ A ++ + + L+ ++S LK S+ +V + ++ + Sbjct: 684 ITSETGIAAGIRRIEAVTGKMAAEYVNSKSDILREISSKLKCSEKEIVHKLDLQSSELKE 743 Query: 768 RKLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + ++ K K+ + ED S KI ++ + I+ +VD L+ + D ++ K ++ + Sbjct: 744 LEKEIEELKLKVAGSAEDDILKSVEKIGGIDLFTGILKDVDGNSLRELADKIRSKSENCV 803 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNG 882 ++L G S K ++ + T++ + + + ++ +V + GGGGGGRP MAQ+GG Sbjct: 804 VLL-GSSIGGKVQLVAMATKEAVK--SGIHCGKIIKEVAAITGGGGGGRPDMAQAGGRLP 860 Query: 883 NKADQAIAGVASFLKK 898 +K +AI + + K Sbjct: 861 DKLQEAIGKSNTIITK 876 >gi|150390222|ref|YP_001320271.1| alanyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF] gi|149950084|gb|ABR48612.1| alanyl-tRNA synthetase [Alkaliphilus metalliredigens QYMF] Length = 893 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 356/914 (38%), Positives = 542/914 (59%), Gaps = 64/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL+F+++ H + S L+P ND +L+ N+GM P KN F+G E P + + T Sbjct: 19 LNEIRKLFLDFYEEKEHYVQSSYPLVPHNDKSLLLINAGMAPLKNYFSGVETPPSKRMAT 78 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEMLG+F+FG YFK +IQ W+ TK ++ + Sbjct: 79 CQKCIRTG----DIENVGKTSRHATFFEMLGSFAFGDYFKTESIQWGWEFATKYLEMPED 134 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181 +++ +VY+ED+EA+ +W+ + ++I+R+ DNFW + GPCGPCSE++FD+G+ Sbjct: 135 KIWASVYEEDDEAYGIWENQIKMPKERIVRLGKEDNFWEIG-VGPCGPCSELYFDRGDKY 193 Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 C PG + +R++E WN VF QF++ +LP +IDTGMGLER+A Sbjct: 194 SCGHDDCKPGC------DCDRFVEFWNHVFTQFDKDEAGNYNLLPNPNIDTGMGLERVAC 247 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPA 293 ++Q+ + +++D KH++ + T +Y + N R+I DHLRS +F+I DGILP+ Sbjct: 248 IMQDVDSIFEVDTMKHILNSVCTATNTQYNKDVKTNISLRIITDHLRSITFMIGDGILPS 307 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA + +LLG ++ + L+ + G AY EL++ K I++ ++ Sbjct: 308 NEGRGYVLRRLLRRAARHGKLLGVSKSFLYELMDTVTETYGGAYSELVEKKDYIKKIIQV 367 Query: 354 EDERFGKTLDRGLVLLDGVLSHL-GKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E++RF +T+ +GL +L+ + + GK E +LNG AFKLYDT+G PLD+ ++IL R + Sbjct: 368 EEDRFQETIHQGLEILNQHIEEMIGKSENMLNGTYAFKLYDTYGFPLDLTKEILEEREMT 427 Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F +E+QR+RAR A S G G E + +L +K T F GY+ LR Sbjct: 428 -VDESEFESEMEKQRNRARKARSGGDTEGWKEDAFDAL-DKNIQTSFKGYETLRA----- 480 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + KVL AI+++ + V +G++V +V D+TPFY E+GGQ+GD Sbjct: 481 -EGKVL-----------------AIIEENQSVNLTSAGKEVVIVLDKTPFYPESGGQIGD 522 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAI-VERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G D Q+ D K+ + +H I + RGIL+ S+ +D + R NH+A Sbjct: 523 IGHIFKDEFEGQVLDT-KQGKNQRIHQYIKILRGILQVGDSIQGEVDKEPRHNTERNHTA 581 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL I+G HV Q GS +TP+ LRFD +H + ++SA+L +E VN I L V Sbjct: 582 THLLHKALKGIIGEHVEQAGSLVTPEKLRFDFSHFEGLSSADLSKVELEVNQEILNALNV 641 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T + E+A GA AL G KY D VRVV G +S LCGGTHV ++ EI Sbjct: 642 DTVEASLEEAKKMGAMALFGEKYGDDVRVVKT-----GDYSVELCGGTHVKNSSEIGTFL 696 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-- 767 I+SE+ + AG+RRIEA+TGQ A H+ + ++ + S LK + RVEE+ +E Sbjct: 697 ILSETGVAAGVRRIEAVTGQEAYHHIKREQGLIQDIESLLKTKGEQLTKRVEELLKETKE 756 Query: 768 --RKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 ++LQ + +K Q E L+ I N + H E ++L+++ D+L++KI SG+ Sbjct: 757 KDKELQQLKSKLANQSIDEILNQIEVIEGTNLLVHHFGEQSMEDLRNIGDSLKQKIGSGV 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I L G KAS + T+D++++ ++ ++ R AK+ GGGGGGRP MAQ+GG N Sbjct: 817 IAL-GAESNDKASFFVTATKDVVEKGVHSGNMIREVAKI-AGGGGGGRPDMAQAGGKNPE 874 Query: 884 KADQAIAGVASFLK 897 K A++ V LK Sbjct: 875 KIQSALSIVKGLLK 888 >gi|255349144|ref|ZP_05381151.1| alanyl-tRNA synthetase [Chlamydia trachomatis 70] gi|255503681|ref|ZP_05382071.1| alanyl-tRNA synthetase [Chlamydia trachomatis 70s] gi|255507361|ref|ZP_05383000.1| alanyl-tRNA synthetase [Chlamydia trachomatis D(s)2923] gi|289525793|emb|CBJ15274.1| alanyl-tRNA synthetase [Chlamydia trachomatis Sweden2] gi|296435369|gb|ADH17547.1| alanyl-tRNA synthetase [Chlamydia trachomatis E/150] gi|296439086|gb|ADH21239.1| alanyl-tRNA synthetase [Chlamydia trachomatis E/11023] Length = 875 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 334/887 (37%), Positives = 492/887 (55%), Gaps = 55/887 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y TT Sbjct: 4 NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 64 QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFDPDF 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RGYVL Sbjct: 242 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F KT Sbjct: 302 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL ++G+ AFKL DT+GLP+D + +L ID+ +F + Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 E + R+R ++ + + F + ++FIGYD L F Sbjct: 421 EVEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF------------- 465 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 ++ I++ EI G + ++ TPFYAE GGQ+GD+G + Sbjct: 466 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAEKGGQIGDSGEIFCESGTF 515 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL L Sbjct: 516 LVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 575 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D ++ Sbjct: 576 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 635 Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 S G KY D VRVV + S LCGGTH +TG+I I E ++ GI Sbjct: 636 SSEIKQFFGDKYGDIVRVVLAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771 RRIEA TG+ A + GQD L +A+ ++ + ++ ++ + EE + L Q Sbjct: 690 RRIEATTGEDAENIARGQDMDLNEIATVIQSPKDQILIKIRSVMEEKKDLAKQVADLENQ 749 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 L+ + K L SC KI D +++ + ++E + + ++ +A+ K+I + I L Sbjct: 750 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876 K + VL V++DL R V L A++L GG GG+ AQ Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 850 >gi|256027953|ref|ZP_05441787.1| alanyl-tRNA synthetase [Fusobacterium sp. D11] gi|289765898|ref|ZP_06525276.1| alanyl-tRNA synthetase [Fusobacterium sp. D11] gi|289717453|gb|EFD81465.1| alanyl-tRNA synthetase [Fusobacterium sp. D11] Length = 867 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 345/894 (38%), Positives = 524/894 (58%), Gaps = 62/894 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ +D+ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKIDKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 TNN++ DL +++ + ++TG +Y N+ + +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 TNNFETDLLFPILEEAGKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + +R E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVRIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGMQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVTVLR- 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +KYG T+F GY+ ED Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYE-------KTEDEGK 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + EA G+ + ++FD+TPFYAE+GGQ+GD G Sbjct: 470 LLS-----------------------LREAKDGKYL-LIFDKTPFYAESGGQVGDQGKIH 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H E+GI + L +D R + NH+ATHLLH Sbjct: 506 SDDFIGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLEVDTVRRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IED VN+ I + + V + Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGVEVNISHHS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L IVSES Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSESG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773 I AG+RRIEA TG A + + LK + LK + N++ +VE+ E + + +L Sbjct: 680 IAAGVRRIEAKTGYGAYLVEKTEADILKDIEKKLKATNSNLIEKVEKTLETLKDTEKELE 739 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830 K+KL L + + ++ +++ K +L++++D ++ + + II+L Sbjct: 740 TLKQKLALFETKAAISGMEEIGGAKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLA-- 797 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 S + K + + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + K Sbjct: 798 STQDKLAFAVGVTKTLTDKVKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEK 850 >gi|237744281|ref|ZP_04574762.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1] gi|229431510|gb|EEO41722.1| alanyl-tRNA synthetase [Fusobacterium sp. 7_1] Length = 867 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 344/894 (38%), Positives = 524/894 (58%), Gaps = 62/894 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ +D+ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKIDKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWTEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 TNN++ DL +++ + ++TG +Y N+ + +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 TNNFETDLLFPILEEAGKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLKNIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGMQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVTVLR- 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +KYG T+F GY+ ED Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEKFYDKYGVTKFTGYE-------KTEDEGK 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + EA G+ + ++FD+TPFYAE+GGQ+GD G Sbjct: 470 LLS-----------------------LREAKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H E+GI + L +D R + NH+ATHLLH Sbjct: 506 SDDFIGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLKVDIVRRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IED VN+ I + + V + Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTTEQLSKIEDIVNEKIREGIEVNISHHS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L IVSES Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIVSESG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773 I AG+RRIEA TG A + + LK + LK + N++ +VE+ E + + +L Sbjct: 680 IAAGVRRIEAKTGYGAYLVEKTEADILKDIERKLKATNSNLIEKVEKTLETLKDTEKELE 739 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830 K+KL L + + ++ +++ K +L++++D ++ + + II+L I Sbjct: 740 ALKQKLALFETKAAISGMEEIGGTKVLVAAFKDKSAEDLRTMIDTIKAENEKAIIVLASI 799 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + K + + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + K Sbjct: 800 --QDKLAFAVGVTKTLTDKVKAGDLVKKLAE-MTGGKGGGRPDFAQAGGKDKEK 850 >gi|294785718|ref|ZP_06751006.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27] gi|294487432|gb|EFG34794.1| alanine--tRNA ligase [Fusobacterium sp. 3_1_27] Length = 867 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 344/896 (38%), Positives = 529/896 (59%), Gaps = 66/896 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ +++ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKINKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 TNN++ DL +++ + ++TG +Y N+ + +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 TNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLGNIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGITVLR- 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +KYG T+F GY+ ED Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYE-------KTEDEGK 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + E G+ + ++FD+TPFYAE+GGQ+GD G Sbjct: 470 LLN-----------------------LRETKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H E+GI + L +D R + NH+ATHLLH Sbjct: 506 SDNFVGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLVVDVVRRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IE+ VN+ I + + V N Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEKLSKIENIVNEKIREGIEVSISYHN 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY D+VRVV V S+ LCGGTH+ + G+I L I+SE Sbjct: 625 IEEAKKLGAMMLFGDKYGDKVRVVDVPG-----FSTELCGGTHIDNIGKIGLFKIISEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 I AG+RRIEA TG A +L+ ++E L + LK + N+V +VE+ E ++ + Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828 L + K+KL L + ++N + +I+ K +L++++DA++ + + II+L Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 S + K + + VT+ L+D+ A DL + A++ GG GGGR AQ+GG + K Sbjct: 798 --STQDKLAFAVGVTKTLIDKIKAGDLVKKLAEIT-GGKGGGRADFAQAGGKDEEK 850 >gi|205830053|sp|A6TQZ4|SYA_ALKMQ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 880 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 356/914 (38%), Positives = 542/914 (59%), Gaps = 64/914 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL+F+++ H + S L+P ND +L+ N+GM P KN F+G E P + + T Sbjct: 6 LNEIRKLFLDFYEEKEHYVQSSYPLVPHNDKSLLLINAGMAPLKNYFSGVETPPSKRMAT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEMLG+F+FG YFK +IQ W+ TK ++ + Sbjct: 66 CQKCIRTG----DIENVGKTSRHATFFEMLGSFAFGDYFKTESIQWGWEFATKYLEMPED 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181 +++ +VY+ED+EA+ +W+ + ++I+R+ DNFW + GPCGPCSE++FD+G+ Sbjct: 122 KIWASVYEEDDEAYGIWENQIKMPKERIVRLGKEDNFWEIG-VGPCGPCSELYFDRGDKY 180 Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 C PG + +R++E WN VF QF++ +LP +IDTGMGLER+A Sbjct: 181 SCGHDDCKPGC------DCDRFVEFWNHVFTQFDKDEAGNYNLLPNPNIDTGMGLERVAC 234 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPA 293 ++Q+ + +++D KH++ + T +Y + N R+I DHLRS +F+I DGILP+ Sbjct: 235 IMQDVDSIFEVDTMKHILNSVCTATNTQYNKDVKTNISLRIITDHLRSITFMIGDGILPS 294 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA + +LLG ++ + L+ + G AY EL++ K I++ ++ Sbjct: 295 NEGRGYVLRRLLRRAARHGKLLGVSKSFLYELMDTVTETYGGAYSELVEKKDYIKKIIQV 354 Query: 354 EDERFGKTLDRGLVLLDGVLSHL-GKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E++RF +T+ +GL +L+ + + GK E +LNG AFKLYDT+G PLD+ ++IL R + Sbjct: 355 EEDRFQETIHQGLEILNQHIEEMIGKSENMLNGTYAFKLYDTYGFPLDLTKEILEEREMT 414 Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F +E+QR+RAR A S G G E + +L +K T F GY+ LR Sbjct: 415 -VDESEFESEMEKQRNRARKARSGGDTEGWKEDAFDAL-DKNIQTSFKGYETLRA----- 467 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + KVL AI+++ + V +G++V +V D+TPFY E+GGQ+GD Sbjct: 468 -EGKVL-----------------AIIEENQSVNLTSAGKEVVIVLDKTPFYPESGGQIGD 509 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAI-VERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G D Q+ D K+ + +H I + RGIL+ S+ +D + R NH+A Sbjct: 510 IGHIFKDEFEGQVLDT-KQGKNQRIHQYIKILRGILQVGDSIQGEVDKEPRHNTERNHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL I+G HV Q GS +TP+ LRFD +H + ++SA+L +E VN I L V Sbjct: 569 THLLHKALKGIIGEHVEQAGSLVTPEKLRFDFSHFEGLSSADLSKVELEVNQEILNALNV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T + E+A GA AL G KY D VRVV G +S LCGGTHV ++ EI Sbjct: 629 DTVEASLEEAKKMGAMALFGEKYGDDVRVVKT-----GDYSVELCGGTHVKNSSEIGTFL 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-- 767 I+SE+ + AG+RRIEA+TGQ A H+ + ++ + S LK + RVEE+ +E Sbjct: 684 ILSETGVAAGVRRIEAVTGQEAYHHIKREQGLIQDIESLLKTKGEQLTKRVEELLKETKE 743 Query: 768 --RKLQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 ++LQ + +K Q E L+ I N + H E ++L+++ D+L++KI SG+ Sbjct: 744 KDKELQQLKSKLANQSIDEILNQIEVIEGTNLLVHHFGEQSMEDLRNIGDSLKQKIGSGV 803 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I L G KAS + T+D++++ ++ ++ R AK+ GGGGGGRP MAQ+GG N Sbjct: 804 IAL-GAESNDKASFFVTATKDVVEKGVHSGNMIREVAKI-AGGGGGGRPDMAQAGGKNPE 861 Query: 884 KADQAIAGVASFLK 897 K A++ V LK Sbjct: 862 KIQSALSIVKGLLK 875 >gi|166154091|ref|YP_001654209.1| alanyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] gi|166154966|ref|YP_001653221.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335296|ref|ZP_07223540.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2tet1] gi|205830022|sp|B0B8X5|SYA_CHLT2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830023|sp|B0BAK4|SYA_CHLTB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|165930079|emb|CAP03562.1| alanyl-tRNA synthetase [Chlamydia trachomatis 434/Bu] gi|165930954|emb|CAP06516.1| alanyl-tRNA synthetase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 875 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 334/887 (37%), Positives = 492/887 (55%), Gaps = 55/887 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y TT Sbjct: 4 NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 64 QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSVFNFDPDF 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETKTV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RGYVL Sbjct: 242 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F KT Sbjct: 302 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL ++G+ AFKL DT+GLP+D + +L ID+ +F + Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 E + R+R ++ + + F + ++FIGYD L F Sbjct: 421 EVEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF------------- 465 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 ++ I++ EI G + ++ TPFYAE GGQ+GD+G + Sbjct: 466 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAEKGGQIGDSGEIFCESGTF 515 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL L Sbjct: 516 LVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 575 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D ++ Sbjct: 576 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 635 Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 S G KY D VRVV + S LCGGTH +TG+I I E ++ GI Sbjct: 636 SSEIKQFCGDKYGDIVRVVLAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771 RRIEA TG+ A + GQD L +A+ ++ + ++ ++ + EE + L Q Sbjct: 690 RRIEATTGEDAENIARGQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQ 749 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 L+ + K L SC KI D +++ + ++E + + ++ +A+ K+I + I L Sbjct: 750 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876 K + VL V++DL R V L A++L GG GG+ AQ Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 850 >gi|34763053|ref|ZP_00144027.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887279|gb|EAA24376.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 867 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 345/896 (38%), Positives = 527/896 (58%), Gaps = 66/896 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ +++ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKINKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 TNN++ DL +++ + ++TG +Y N+ + +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 TNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGITVLR- 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +KYG T+F GY+ ED Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYE-------KTEDEGK 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + E G+ + ++FD+TPFYAE+GGQ+GD G Sbjct: 470 LLN-----------------------LRETKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H E+GI + L +D R + NH+ATHLLH Sbjct: 506 SDNFVGKVLDVQKQKD-IFIHTVEFEKGISEENKTYKLVVDVVRRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IED VN+ I + + V N Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVSISYHN 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L I+SE Sbjct: 625 IEEAKKLGAMMLFGDKYGDMVRVVDVP-----GFSTELCGGTHIDNIGKIGLFKIISEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 I AG+RRIEA TG A +L+ ++E L + LK + N+V +VE+ E ++ + Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828 L + K+KL L + ++N + +I+ K +L++++DA++ + + II+L Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 S + K + + VT+ L D+ A DL + A++ GG GGGR AQ+GG + K Sbjct: 798 --STQDKLAFAVGVTKTLTDKIKAGDLVKKLAEIT-GGKGGGRADFAQAGGKDEEK 850 >gi|153853058|ref|ZP_01994467.1| hypothetical protein DORLON_00452 [Dorea longicatena DSM 13814] gi|149753844|gb|EDM63775.1| hypothetical protein DORLON_00452 [Dorea longicatena DSM 13814] Length = 887 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 356/908 (39%), Positives = 521/908 (57%), Gaps = 52/908 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 14 VNELRRMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI W+ LT+ LD Sbjct: 74 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWTWEFLTEVVGLDPD 129 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y +D+EAF++W K G+ A++I R DNFW GPCGPCSE+++D+GE Sbjct: 130 RLYPSIYQDDDEAFEIWNKEIGIPAERIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 188 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + E +RY+EIWN VF QF+ L + +IDTGMGLER+A ++Q+ Sbjct: 189 GCGQPGCTVGCECDRYMEIWNNVFTQFDNDGHNNYTELEQKNIDTGMGLERLACIVQDVD 248 Query: 242 NNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +DID K L + G++Y+ N + RV+ DH+RS +F+I+DGILP+N GRGY Sbjct: 249 SMFDIDTLKALRDHVCNMAGVEYQKDDNTDTSIRVLTDHIRSVTFMISDGILPSNSGRGY 308 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG ++ L + YPEL + K I + E+ +F Sbjct: 309 VLRRLLRRACRHGRLLGIKGAFLVKLAQTVIDGSKDGYPELEEKKDFIFNVIAKEEAQFN 368 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + K + +L+G AFKLYDT+G P+D+ +IL +GL D Sbjct: 369 KTIDQGLSILADMEEEMKKNGEAVLSGKNAFKLYDTYGFPIDLTSEILEEKGLT-YDEKG 427 Query: 418 FNQALEEQRSRARAHSLGLG--SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A +EQR+++ + G SG ++ L + +++F+GY+ L Sbjct: 428 FEEAQKEQRAKSEG-TFGTHNYSGKDASVYDELDAEL-SSEFVGYNQLE----------- 474 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 V S V A+ + E+V+ G K ++ +TPFYA GGQ D G Sbjct: 475 ------------VESDVTAMTSETEVVDALTDGDKGTIIVAKTPFYATMGGQEADKGIIC 522 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + DV K A G F H V +G+++ + L +D +NR NHSATHLL Sbjct: 523 TEDGEFVVEDVVKLAGGKFGHVGQVTKGMIKVGDKVTLKVDKENRALAENNHSATHLLQK 582 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV Q GS LRFD TH +T+ EL+ +ED VN+ I +NLPVV + M Sbjct: 583 ALRMVLGNHVEQAGSLNNAQRLRFDFTHFSAMTAEELQKVEDIVNEKIRENLPVVIKNMP 642 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A +GAAAL G KY D VRVVS+ G S CGGTHV +TG IM I+SE+ Sbjct: 643 IEEAKKTGAAALFGEKYGDIVRVVSM-----GDFSIEFCGGTHVKNTGNIMAFKILSETG 697 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG+RRIEA+T + + Q++KL A LK + N+ +V + E + L+ Sbjct: 698 VAAGVRRIEALTSKGLLDYYSAQEKKLHETAKLLKATPENIEEKVSHLMNENKVLKGEVE 757 Query: 776 KRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L + + ++ V F++ + VD L+ + D L++K+ G+I+L + Sbjct: 758 SLKSKLAKDAMGDVMNQVEEVKGVKFLATSLEGVDMNGLRDLGDQLKEKLGEGVILLASV 817 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + K S++ T+ + + +A +L + AK++ GGGGGGRP+MAQ+GG N + A+ Sbjct: 818 N-DGKVSLMATATDGAMKQGAHAGNLIKAVAKLV-GGGGGGRPNMAQAGGKNPAGVEDAL 875 Query: 890 AGVASFLK 897 L+ Sbjct: 876 KAAKEALE 883 >gi|152991270|ref|YP_001356992.1| alanyl-tRNA synthetase [Nitratiruptor sp. SB155-2] gi|205830162|sp|A6Q576|SYA_NITSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151423131|dbj|BAF70635.1| alanyl-tRNA synthetase [Nitratiruptor sp. SB155-2] Length = 850 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 355/900 (39%), Positives = 527/900 (58%), Gaps = 62/900 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL +F H + PS+ L+P DPTL+FTN+GMVPFK IFTG+ T+ Q Sbjct: 3 IRKEFLNYFASKAHTIYPSAPLVP-EDPTLLFTNAGMVPFKKIFTGEMPAEVPRATSCQT 61 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ +L +L+ Sbjct: 62 CIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIAYAWEFVTEVLELPVEKLW 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIPG 185 +TV++ D+EA K+W+K + D+I R DNFW M +TGPCGPCSEIF+DQGE G Sbjct: 122 VTVHESDDEAEKIWQKF--VKKDRIKRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEHFKG 179 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 +G+R++EIWNLVFMQ+E+ E LPK SIDTGMGLER+ + + +NYD Sbjct: 180 PEDYLGGDGDRFLEIWNLVFMQYERNEAGELLPLPKPSIDTGMGLERITAIKEGVLSNYD 239 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 LF LI A ++ KY + RVI DH+R+ +FL++ G++ +NEGRGYVLRRI+ Sbjct: 240 SSLFMPLIDAISDLSKKKYIYKEGASFRVIADHIRAVTFLLSQGVMFSNEGRGYVLRRIL 299 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RR + + LLG EP M L + MG Y L + ++E +R+E+ERF +T++ G Sbjct: 300 RRGVRHGYLLGLKEPFMYRLADKVAEIMGGHYSYLYEKLSTVKEQIRAEEERFYQTIEAG 359 Query: 366 LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 + L + L+ I +GDVAFKLYDT+G PLD+ +D+L +GL +D F ++EQ Sbjct: 360 MRLFEEELAKT--KTIFSGDVAFKLYDTYGFPLDLTEDMLREKGLR-LDKERFETLMQEQ 416 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 R RA+A G G KE G +F+GY+ L+ Sbjct: 417 RQRAKAAWKGSGDVALSG---DFKELLGLKNEFVGYEKLKA------------------- 454 Query: 485 TNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRL- 541 +I+ ++ + + E GQK ++ ++TPFYAE+GGQ+GD G + +G ++ Sbjct: 455 ----HTIITGLLDESFKKCESLKPGQKGWILLEETPFYAESGGQIGDRGEIRLYEGEKIA 510 Query: 542 QITDVQKKAE-GIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ D +K + + + AI E ++ + ++ +D ++RR+++ +HSATH+LH AL I Sbjct: 511 KVLDTKKFFDLNMSLVEAIKE---VKKDEAVEAVVD-KSRREIAKHHSATHILHSALRKI 566 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV+Q GS + + LRFD +H KP+ + E++ IE+ VN++IAQ + M + A Sbjct: 567 LGEHVTQQGSLVEANRLRFDFSHPKPLNAQEIERIENFVNEVIAQGIEAKVEEMPIDKAK 626 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY D VRV VE+ D V LCGGTHV ++ EI +I ES + +G+ Sbjct: 627 EKGAMALFGEKYGDVVRV--VEFGDVSVE---LCGGTHVKNSAEIGSFFITKESGVSSGV 681 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+ G A E L + +V +++ ++++ +E + L K++++ Sbjct: 682 RRIEAVCGMSAVKLAKSWRESLVKASE--EVKNKDILLGIKKLKDEIKDL-----KQEIK 734 Query: 781 LNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 N+ +S ++A ++N + +I EVD+ ++K ++D L+ + +ML EK V Sbjct: 735 -NISSVSAKELASQEINGVRVVIDEVDAGDIKKIIDDLKNAHEKLAVMLFQKRGEK---V 790 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 LI + + A D + A V+ GGGGGGRP AQ+GG N K +A + K+ Sbjct: 791 LIAAGAKGV-KLKAGDWVKSVAPVV-GGGGGGRPDFAQAGGKNPEKIGEAKKAALEYAKE 848 >gi|256844995|ref|ZP_05550453.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2] gi|256718554|gb|EEU32109.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_36A2] Length = 867 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 345/896 (38%), Positives = 527/896 (58%), Gaps = 66/896 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ +++ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKINKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDKNSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 TNN++ DL +++ + ++TG +Y N+ + +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 TNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLENIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGITVLR- 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +KYG T+F GY+ ED Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYE-------KTEDEGK 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + E G+ + ++FD+TPFYAE+GGQ+GD G Sbjct: 470 LLN-----------------------LRETKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H E+GI + L +D R + NH+ATHLLH Sbjct: 506 SDNFVGKVLDVQKQKD-IFIHTVEFEKGISEENKTYKLVVDVVRRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IED VN+ I + + V N Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEQLSKIEDIVNEKIREGIEVSISYHN 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L I+SE Sbjct: 625 IEEAKKLGAMMLFGDKYGDMVRVVDVP-----GFSTELCGGTHIDNIGKIGLFKIISEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 I AG+RRIEA TG A +L+ ++E L + LK + N+V +VE+ E ++ + Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828 L + K+KL L + ++N + +I+ K +L++++DA++ + + II+L Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 S + K + + VT+ L D+ A DL + A++ GG GGGR AQ+GG + K Sbjct: 798 --STQDKLAFAVGVTKTLTDKIKAGDLVKKLAEIT-GGKGGGRADFAQAGGKDEEK 850 >gi|289423561|ref|ZP_06425362.1| alanine--tRNA ligase [Peptostreptococcus anaerobius 653-L] gi|289156063|gb|EFD04727.1| alanine--tRNA ligase [Peptostreptococcus anaerobius 653-L] Length = 878 Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust. Identities = 352/915 (38%), Positives = 533/915 (58%), Gaps = 67/915 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR F EFF+ GH + S SL+P ND +L+ NSGM P KN F+G E P + ++T Sbjct: 6 LNEIRKNFTEFFRSKGHYIAKSHSLVPSNDKSLLLINSGMAPLKNYFSGVETPPKERMST 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 VQKC+R G D++NVG T RH TFFEM+GNFSFG YFK+ AI AW+ +T+ L + Sbjct: 66 VQKCIRTG----DIENVGVTARHATFFEMMGNFSFGDYFKKDAITWAWEFITQWLKLPEE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181 ++++TVY+ D+EA+ LWK + G ++I+R+ +DNFW + GPCGPCSEI+FD+GE Sbjct: 122 KIWVTVYESDDEAYDLWKNMIGFPEERIVRLGKDDNFWEIG-LGPCGPCSEIYFDKGEKY 180 Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 C PG + +R++E WNLVF QF++Q L +IDTGMGLERMA Sbjct: 181 GCGCEDCKPGC------DCDRFLEFWNLVFTQFDRQEDGSYGDLENKNIDTGMGLERMAC 234 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILP 292 V+Q+ +++D + ++Q ++ G Y GN+ N R+I DH+RS SF++ADGILP Sbjct: 235 VMQDVDTIFEVDTIQEVLQNVCKIAGKTY-GNDPKNDKSIRIITDHIRSVSFMVADGILP 293 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA + +LLG + L+ + G AYPEL++ + I++ + Sbjct: 294 SNEGRGYVLRRLLRRAARHGKLLGIEGGFLNDLVDVVIKTSGEAYPELVEKEAYIKKVIG 353 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E+F + L +GL +L GK I +G++AFKLYDT+G PLD+ +IL G Sbjct: 354 IEEEKFAEALHQGLEILKSYTEETKDAGKTHI-SGEMAFKLYDTYGFPLDLTMEILEDEG 412 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D F ++ Q+ RARA + G G K + + +++F GY K + Sbjct: 413 MT-VDEEGFEAEMQAQKDRARA-ARGNREGDAWKEDPLTRLEDASSEFDGY------KNL 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 K D KV KAIV E+V+ G + E++ D T FY GGQ+G Sbjct: 465 KMDSKV-----------------KAIVADNELVDSIEEGCEAELILDTTTFYPNGGGQVG 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G D ++ D K A H + G L+ + +++ + R + NHSA Sbjct: 508 DKGTIESDIGVFEVVDTIKGANSSIKHIGRLVSGSLKLGDLVATSVNKELRMDAARNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL T+LG HV+Q GS + PD LRFD TH + IT +L IE+ VND + +++P+ Sbjct: 568 THLLHKALKTVLGEHVNQAGSLVAPDRLRFDFTHFESITKDQLLEIEEMVNDFVLESMPI 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 +MN A GA AL G KY + VRVV++ G S LCGGTH+ +T ++ L Sbjct: 628 TAEVMNINAAKEMGATALFGEKYGENVRVVTM-----GDCSIELCGGTHLDNTAQVGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY-- 767 IVSES + AG+RRIEAITG+ + D + S+ LK + N+ R + I EE Sbjct: 683 IVSESGVAAGVRRIEAITGRSVYQSIKDTDRLVASVVDILKTREDNLFERAKTIVEENKA 742 Query: 768 --RKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++LQ I AK ++ N + + S +I VN +++ +D L+ D L+ K++SG Sbjct: 743 LEKELQAIKAKMSME-NADSVLDSKIEIKGVNLITNRYEGMDMDTLRQAADQLRDKLESG 801 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L ++ + K +++ +++ +D+ +A ++ R AK+ GG GGGRP+MAQ+G + Sbjct: 802 VVVLANVT-DGKINIVATASKEAIDKGAHAGNIVREVAKI-AGGKGGGRPNMAQAGASDI 859 Query: 883 NKADQAIAGVASFLK 897 +K D+A++ ++ Sbjct: 860 SKLDEALSAAKEIVE 874 >gi|57505123|ref|ZP_00371068.1| alanyl-tRNA synthetase [Campylobacter coli RM2228] gi|305433060|ref|ZP_07402216.1| alanine--tRNA ligase [Campylobacter coli JV20] gi|57019098|gb|EAL55813.1| alanyl-tRNA synthetase [Campylobacter coli RM2228] gi|304443761|gb|EFM36418.1| alanine--tRNA ligase [Campylobacter coli JV20] Length = 842 Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust. Identities = 361/899 (40%), Positives = 522/899 (58%), Gaps = 68/899 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 +R+ +L FF+ GHE+ PSS L+P +D TL+FTN+GMVPFK+IF G+ +P T+ Q Sbjct: 3 VRSEYLNFFKSKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFIGEVPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184 Y+TV++ D+EAF+LW+K + ++I R DNFW M +TGPCGPCSEIF+DQGE Sbjct: 122 YVTVHESDDEAFELWQK--HIQKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEYFN 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + K +N+ Sbjct: 180 GEEDYMGGDGDRFLEIWNLVFMQYERSADGKLTPLPKPSIDTGMGLERVTAIKEGKFSNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF +I ++ G Y + + RVI DH+RSS FL+A G EGRGYVLRRI Sbjct: 240 DSSLFMPIIDEIAKLCGKTYIYESGASFRVIADHIRSSVFLLAQGTSFDKEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG +P M +L+ +C MG Y L + K I+E + E+ERF T++ Sbjct: 300 LRRALRHGYLLGLKKPFMYNLVDVVCKLMGEHYTYLNEKKDFIKEQICLEEERFLSTIEN 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ + + L + E+ +G+VAFKLYDT+G PLD+ QD+L + L +D F + + E Sbjct: 360 GIEIFNKELKN--TKEVFSGEVAFKLYDTYGFPLDLTQDMLREKNLV-VDEAKFEELMNE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q++RA+A G G + +L EK+G F+GY+ K CQ + L Sbjct: 417 QKNRAKASWKGSGDKVASGDFKNLLEKFGENCFVGYE------------KTECQATVLAL 464 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 + V ++ G V+ D TPFYA +GGQ+ DTG IG ++ Sbjct: 465 LDEDFKEVSSLKGLG------------WVMLDNTPFYATSGGQIADTG-YIGTS---EVL 508 Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D QK ++ ++V+ ++ ++ ID R Q + +HSATHLLHHAL ILGS Sbjct: 509 DTQK---FFNLNLSLVKANEEIKLNDKIIAKIDTDKREQTARHHSATHLLHHALREILGS 565 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 H+SQ GS + + LRFD TH K ++ EL+SIE VN++I + + M EDA SG Sbjct: 566 HISQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIISSSEAILENMPLEDAKKSG 625 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+RRI Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679 Query: 724 EAITGQRARSH---LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKL 779 EA+ + A M ++ LK +S G V+++ E KL+ + K Sbjct: 680 EAVVSRAALEFCKTFMNENLNLKEELKSNDLSLG-----VKKLKNEILKLKNELKNSNKS 734 Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 QLN +++N + + V+S ++K+++D + K + I+L+ +K+ K ++ Sbjct: 735 QLNS--------SNINGVQICVECVESGDIKTMIDEFKNKFEKAAILLIQ-TKDDKITLA 785 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 V L A +L + A++L GG GGGR A +GG + +K D+A+ ++K Sbjct: 786 AGVKNCPL---KAGNLVKNIAQIL-GGNGGGRDDFATAGGKDISKIDEALKQALDLIQK 840 >gi|189485045|ref|YP_001955986.1| alanyl-tRNA synthetase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|205830280|sp|B1GZ43|SYA_UNCTG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|170287004|dbj|BAG13525.1| alanyl-tRNA synthetase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 877 Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust. Identities = 342/904 (37%), Positives = 516/904 (57%), Gaps = 46/904 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL FF+ +G ++PS SLIP D TL+FT++GMV FK F GQ K + T+ Sbjct: 6 SKIRAEFLGFFKNSGCAVVPSDSLIPAGDKTLLFTSAGMVQFKQHFLGQSKDSFTRATSC 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC R +D+D VG T RH TFFEMLGNFSFG YFK+ A AW+ LTK L + + Sbjct: 66 QKCFRT----SDIDQVGTTARHLTFFEMLGNFSFGDYFKKEAAAWAWEFLTKNMSLPKDK 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LYIT+Y +D+E +WK I+ A+KII++ NFW+M ETGPCGPCSEI D G+ Sbjct: 122 LYITIYKDDDEVAGIWKNIA--PANKIIKMDEKTNFWNMGETGPCGPCSEILIDLGQETG 179 Query: 185 GGLPGSSEEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P E +RY+EIWNLVF QF++Q LP+ +IDTGMGLER++ + + N Sbjct: 180 CGSPACCPECNCDRYLEIWNLVFTQFDKQPDGSLKNLPRKNIDTGMGLERLSATVNGRKN 239 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 +D DLF +++ + ++ +K EG+NI R+I DH R+ +FLI+DGILP+NEGRGYVLR Sbjct: 240 VFDTDLFMPVMENAAEILKIKNEGSNISKLRMIADHSRAITFLISDGILPSNEGRGYVLR 299 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + GY +P + L+ + M AYPEL I +++E+E+F +TL Sbjct: 300 RILRRALRQGKFYGYNKPYINELVSDVLKIMEGAYPELSSKLSNIRSIVKTEEEKFLETL 359 Query: 363 DRGLVLLDGVL-SHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 + G +L ++ S+ KD I++G FKLYDT+G P D+ +++ GL ID F Sbjct: 360 ESGSEILSSLINSYKSKDINIISGKDVFKLYDTYGFPHDLTKEMAFENGLE-IDEDKFK- 417 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 E+++++ ++ GSG + ++S L++K G T F GYD + E R Sbjct: 418 -FEQKKAQEKSRVAWCGSGERDITFYSILRKKTGDTVFTGYD-----NYASESR------ 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V A+++ G + E +G E++ + FYA++GGQ D G + Sbjct: 466 ------------VLALIKDGSEISELKTGDNGEIILSHSSFYAQSGGQSDDKGKIANNSF 513 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + + K A +FVH V +G+++ ++ ID + R+Q++ +H+A HLLH AL Sbjct: 514 ESIVEYIFKPAGNLFVHKVKVLKGLIKINDAVSTIIDIERRKQIARHHTAAHLLHKALRE 573 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 G H++Q GS + D RFD TH + +L IE VN II N V M A Sbjct: 574 AFGGHITQAGSLVARDYFRFDFTHFSALKKDDLIKIEKRVNSIIRLNSEVCIETMAIAKA 633 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDG-GVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 +GA AL G KY D VR V ++ E G G +S LCGGTHVS TG+I + I+SESS A Sbjct: 634 RNAGAMALFGEKYGDEVRTVLIKNESGDGNYSMELCGGTHVSRTGDIGIFKIISESSAAA 693 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+ G A ++++ ++ + + L S+ +V + + +Y+KL+ K Sbjct: 694 GVRRIEAVAGIAAENYILDEEAVIIKTSKILNASKEELVNKAHKYTSDYKKLENEFKSLK 753 Query: 779 LQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 L ++ + KI +NF+S I + D K L+++ D L++K++S ++++V E Sbjct: 754 SSLISGEIDSYAKEVKKINGINFLSVIADKADIKALRTISDQLKEKLKSAVLLIVS-KNE 812 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +AS ++ T D + + NA +A+ A + G GG+P AQ G + + + A+ Sbjct: 813 DRASFILSATADCVQKGINAGKIAKAFAASI-NGSAGGKPDFAQGGSKDLSNLNDAVKNA 871 Query: 893 ASFL 896 ++ Sbjct: 872 HKYI 875 >gi|206896025|ref|YP_002246808.1| alanyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265] gi|206738642|gb|ACI17720.1| alanyl-tRNA synthetase [Coprothermobacter proteolyticus DSM 5265] Length = 876 Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust. Identities = 342/897 (38%), Positives = 519/897 (57%), Gaps = 56/897 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+ +L FF++ GH LPSSSL+P +DPTLMFT++GMV FK F GQ +P + +TTVQK Sbjct: 8 IRSVYLSFFEEKGHLRLPSSSLLP-DDPTLMFTSAGMVQFKPYFLGQAQPPAKRITTVQK 66 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R G DL+NVG T+RHHTFFEMLGNFS G YFK+ AI AW+L+T+ F L RL+ Sbjct: 67 CLRTG----DLENVGHTSRHHTFFEMLGNFSIGDYFKKEAILWAWELVTQRFKLPPERLW 122 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGECIPG 185 +T+Y +D+E+F +W + GL ++I+R+ +NFW TGPCGPCSEI +D GE P Sbjct: 123 VTIYQDDDESFDIWHNLVGLPENRIVRMGKEENFWGPPGPTGPCGPCSEIHYDMGEEWPC 182 Query: 186 GLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P G + EGER+ E WNLVF Q+ Q LP+ +IDTGMGLERMA ++Q K N Sbjct: 183 DDPSKGPAAEGERFREFWNLVFTQYYQDENGNLSDLPRKNIDTGMGLERMAAIMQGKPTN 242 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 ++ DLF+ +I+A Q+TG KYE N+V RVI DH+R+ +F I DG +P+NEGRGYV+RR Sbjct: 243 FETDLFQPIIEAIGQLTGKKYE-ENLVAFRVIADHIRALTFAITDGAVPSNEGRGYVIRR 301 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I RR++ Y LG EP + +++P + + YPELI + L + ++ E+E F +TL Sbjct: 302 IARRSVRYGLQLGKEEPFLYNIVPVVVEHYKNWYPELIGGQDLSMKLIKQEEEAFLRTLS 361 Query: 364 RGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 LD ++ + K I + + F+LYDT+GLPLDI+ D+L L+ D NQ Sbjct: 362 SSQRYLDELVQQMKKQGIKEVPAEEVFRLYDTYGLPLDIIDDVLQENNLS-TDKEKLNQI 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +E+ + ++RA G + T+ I+ L T+F GYD L S Sbjct: 421 IEQYKEQSRASWKGGEAVLTDTIFTRLVGNI-KTEFTGYDQLEDS--------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 S+I+ + E G + ++ + TPFYAE+GGQ D G + Sbjct: 465 -------STIIATVKDNSRT--ELHEGDEGAIIVEHTPFYAESGGQEADHGIITTETGTF 515 Query: 542 QITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++ DVQK G + VH+ V G+++ L +D + R+ + H+ATHLLH AL + Sbjct: 516 RVDDVQKVLGGNVIVHYGQVTSGVIKEGQQAFLQVDIERRKAMQRAHTATHLLHAALRRV 575 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG HV Q GS + PD RFD +H + ++ A+++ +E VN+ + +N V + ++A Sbjct: 576 LGDHVRQGGSKVGPDWFRFDFSHFESMSPAQIQEVERLVNEQVLENKEVNIFFTSLDEAK 635 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY + VRVV V S LCGGTH TG+I L +I+SES+ GI Sbjct: 636 KMGAMALFGEKYGETVRVVEVP-----DWSMELCGGTHAKRTGDIGLFHIISESASSQGI 690 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--------LQL 772 RRIEAITG++A HL ++ +K +A L S+ VV +++++ ++ ++ ++ Sbjct: 691 RRIEAITGKKALEHLWNLEKLVKDVAEELDTSKDMVVQKLQKLNQDLKEKDKEIKHLIER 750 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 +H +L + +I + F++ + D L +DA+ + + +G Sbjct: 751 VHTAEGKELFTK---AEEINGIKFINAVFPPRDPSALIIAVDAM-RSFNKPFVAALGTLN 806 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +K +++ + D+ ++ N ++ ++A + GG GGGRP + Q+GG + ++ A+ Sbjct: 807 NEKPVLVLAASPDVAEKVNLREVVNMAASYI-GGKGGGRPTLVQAGGTDASRLSVAV 862 >gi|331002247|ref|ZP_08325766.1| alanyl-tRNA synthetase 1 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411341|gb|EGG90757.1| alanyl-tRNA synthetase 1 [Lachnospiraceae oral taxon 107 str. F0167] Length = 885 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 354/893 (39%), Positives = 524/893 (58%), Gaps = 54/893 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ IR FL+FF++ GH + S SL+P ND +L+ NSGM P K FTGQE P + V T Sbjct: 12 VNRIRKKFLDFFEEKGHLSMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVCT 71 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD Sbjct: 72 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVAGLDAN 127 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY ED+EAF++W K G+ A++I + DNFW E GPCGPCSE+++D+GE Sbjct: 128 RLYPSVYLEDDEAFEIWNKEIGIPAERIFKFGKEDNFWEHGE-GPCGPCSEVYYDRGEKY 186 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + + +RY+E+WN VF QF K L + +IDTGMGLER+A LQ+ Sbjct: 187 GCGKPSCTVGCDCDRYMEVWNNVFSQFNSDGKGNYTELVQKNIDTGMGLERLAVALQDVE 246 Query: 242 NNYDIDLFKHLIQ--ASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +++D K L+ A+ T K + ++ R+I DH+RS +F+I+DGI+P+NEGRGY Sbjct: 247 SIFEVDTIKSLLDRVAALAKTSYKEDAKKDISLRLITDHIRSCTFMISDGIMPSNEGRGY 306 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R+LG + + L + YPEL + K +I + L E+ +F Sbjct: 307 VLRRLLRRAARHGRMLGIKDTFLASLANTVIELSKDGYPELEEKKEMILKVLTEEENKFD 366 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + +L K +++++G+ AF+LYDT+G PLD+ ++I+ +G +D Sbjct: 367 KTIDQGLSILSEIEENLTKSGEKVISGEDAFRLYDTYGFPLDLTKEIIEEKGFT-VDEAG 425 Query: 418 FNQALEEQRSRARAHSLG---LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN+A+E QR++ARA +G+ T I+ SL K + F GYD L Sbjct: 426 FNKAMEAQRNQARAARKATNYMGADVT--IYQSLDPKLTSV-FEGYDSL----------- 471 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 L G + A+ + EIVE G ++ D+T FYA GGQ D G Sbjct: 472 ---------LDTGK---ITALTTEDEIVEAIAEGDHGTIILDKTSFYATMGGQNADIGLI 519 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D + DV K + H V +G+ + ++ +D NR++ + NHSATHLLH Sbjct: 520 KKDDAVFNVVDVIKLSGDKIGHVGFVTKGMFKLGDTVETVVDADNRKKTAANHSATHLLH 579 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + D LRFD TH K +T E+ ++E+ VN I + LPVVT +M Sbjct: 580 KALREVLGNHVEQAGSYVAADRLRFDFTHFKSLTKEEIANVEEIVNAEINKALPVVTDVM 639 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 N EDA SGA AL G KY VRVVS+ G S LCGGTHV +T +I L ++SE+ Sbjct: 640 NVEDAKKSGAMALFGEKYRGDVRVVSM-----GDFSKELCGGTHVHNTADIKLFKVLSEN 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+TG+ + +++ +A LK + ++ + E + +E + L+ + Sbjct: 695 GIAAGVRRIEALTGEGVIEFYQDIESRMQKMAELLKTGEAELITKAESLLDEMKTLKSEN 754 Query: 775 AKRKLQLNVEDL--SCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K +L E L S I +N F++ +S V+ EL+++ D L+ + G+++L Sbjct: 755 EKLKAKLASEALGDSAENIETINGVKFIAMQVSGVEMNELRNLGDKLKNDVDDGMVVLAS 814 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K ++L + ++ L +A ++ + A ++ GGGGGGRP++AQ+GG N Sbjct: 815 -DVDGKVNLLCMAGDNALKAGAHAGNIIKAIATLV-GGGGGGRPNIAQAGGKN 865 >gi|322434171|ref|YP_004216383.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9] gi|321161898|gb|ADW67603.1| alanyl-tRNA synthetase [Acidobacterium sp. MP5ACTX9] Length = 941 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 357/964 (37%), Positives = 526/964 (54%), Gaps = 120/964 (12%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL FF+ H + SSSL+P NDPTL+FTN+GM FK++F G EK Y + Sbjct: 7 SQIREDFLRFFEGKAHRRVHSSSLVPANDPTLLFTNAGMNQFKDVFLGAEKRDYSRAASS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI AW+LLT F +D+ Sbjct: 67 QKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKKDAIAYAWELLTSAAWFAIDK 126 Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 +LY+T+++ DEEA++ W ++ G+ A++I + DNFW+M +TGPCGPCSEI+ Sbjct: 127 EKLYVTIFEGDEKVPRDEEAYQFWLEV-GVPAERIFELGAKDNFWAMGDTGPCGPCSEIY 185 Query: 177 FD-------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D G +P G E+ +RY+EIWNLVFMQFE+ + LPK SIDTGMG Sbjct: 186 YDLGLAASESGADVPFG-----EDDQRYMEIWNLVFMQFERASDGTLTPLPKPSIDTGMG 240 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH-----------RVIVDH 278 LER++ VLQ +NYD DLF LI+ + ++T N + H R+I DH Sbjct: 241 LERVSCVLQGVMSNYDTDLFIPLIKRAAELTLKPTSENPDMGHPVGDEKGAASLRIIADH 300 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 R+++FLIADG+ PANEGRGYVLR+I+RR + + RLLG +P M ++ A+ EM AYP Sbjct: 301 ARAATFLIADGVQPANEGRGYVLRKILRRGIRHGRLLGQEQPFMFEMVKAVRDEMKVAYP 360 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---------------------- 376 EL++ + + + +E+E+F + +++ + LD L + Sbjct: 361 ELVEHAERVSKVVLAEEEQFARVIEKAMNELDRTLDAIKQLPSVLDRWNKTPESAPDYKE 420 Query: 377 ----------------GKDE--------ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 K+E + G AF ++T+GLP+D M+D G+ Sbjct: 421 AEAAFWVTFELVHRTVNKNEARPKSRHGMFPGRTAFFFFETYGLPIDFMEDAARDAGIE- 479 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +A E++ RARA G T ++ L + T+F GY LR Sbjct: 480 LDRAEFEKAKIEEQERARASWKGGSQKTASPVYRELAK----TEFEGYSALR-------- 527 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +G I A+V+ G V G++ EVV D T FYA++GGQ+GD G Sbjct: 528 ------------VDGARVI--ALVKDGVGVHVLSPGEEGEVVLDATSFYADSGGQVGDVG 573 Query: 533 ---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHS 588 A + ++ K +G+F H I + I + E+ V ++ + R NH+ Sbjct: 574 WLYAADHTTVLAEVRGANKPVQGVFAHKVIAKVAIAVGDEVDTV--VNGEVRAATMRNHT 631 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 THLLH AL +LG HV Q GS + D LRFD +H + EL+ IE VN + +N P Sbjct: 632 GTHLLHAALREVLGKHVKQAGSLVNRDRLRFDFSHFTGVAEEELREIETIVNAQVLKNTP 691 Query: 649 VVTRIMNREDAIAS--GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + D + GA AL G KY D+VRVV + G S+ LCGGTH +TGEI Sbjct: 692 VETLVDVPIDVAVNDYGAMALFGEKYGDKVRVVRI-----GEFSTELCGGTHTLATGEIG 746 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 ++ +V ESS+ +G+RR+EAI+G A E + + + + EEI + Sbjct: 747 VIKLVGESSVASGVRRLEAISGTGALDEFRRGFEVSRVVPGGAAGLRDRLASDEEEIKKL 806 Query: 767 YRKLQLIHAKRKLQLNVEDLSCH-KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 R+L + K + + ++ V ++ + VD +++ ++D L+ K+ SG++ Sbjct: 807 RRELDGLRLKAAQAATADAAAGAIEVKGVKVLAKRLDGVDKAQMRELVDQLRGKLGSGVV 866 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + E K ++++ VT+DL + A + L A ++ GG GGGRP +A++GG + ++ Sbjct: 867 VLGAATAEGKVALIVGVTKDLTGKVQAGKIVGLLAALV-GGKGGGRPDLAEAGGSDVSQL 925 Query: 886 DQAI 889 D A+ Sbjct: 926 DAAL 929 >gi|172058083|ref|YP_001814543.1| alanyl-tRNA synthetase [Exiguobacterium sibiricum 255-15] gi|205830090|sp|B1YJE5|SYA_EXIS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|171990604|gb|ACB61526.1| alanyl-tRNA synthetase [Exiguobacterium sibiricum 255-15] Length = 880 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 357/910 (39%), Positives = 534/910 (58%), Gaps = 59/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FFQ GH + PS+SL+P DPTL++ NSG+ K F G+ P + Sbjct: 10 AQIRQMYLDFFQSKGHAIEPSASLVPIEDPTLLWINSGVATLKKYFDGRVIPQNPRIVNA 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YF+E AI+ W+LLT + + LD Sbjct: 70 QKSIRT----NDIENVGKTARHHTFFEMLGNFSVGDYFREDAIKWGWELLTSDEWYGLDP 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +T++ ED+ A ++W ++ G+ A++II + DNFW + E GP GP +EIFFD+G Sbjct: 126 DRLSVTIHPEDDAARQIWLEL-GVPAERIIPL--EDNFWEIGE-GPSGPNTEIFFDRGPA 181 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P SE E ERY+EIWN+VF Q+ LP+ +IDTGMGLERMA+V+ Sbjct: 182 F-GDDPNDSELYPGGENERYLEIWNIVFSQYNHDGHGNYTELPRKNIDTGMGLERMASVM 240 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295 Q+ N+D DLF +I +E+++G +Y + V +VI DH+R+ +F I DG LP+NE Sbjct: 241 QDVPTNFDTDLFMPIIHKTEEISGKRYREDTKLDVAFKVIADHIRTVAFAIGDGALPSNE 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ YA++LG P M L+ + + M YP++ + I+ +++E+ Sbjct: 301 GRGYVLRRLLRRAVRYAKMLGIERPFMYELVDTVGSVMVDFYPQVPEKADFIKRVIKNEE 360 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TL GL +L+ V + I++G+ AF+LYDT+G PL++ + ++ + Sbjct: 361 ERFHETLHDGLAILNTVAQAAKNNGEHIISGEDAFRLYDTYGFPLELTVEYAEDHQMS-V 419 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +A++EQR RARA G+ ++ L +QF+GY L D Sbjct: 420 DEEGFKRAMDEQRKRARAARED--GGSMQQQSEVLATLTVPSQFVGYTDLEA------DA 471 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K++ A++ GE V E +G++ +++ D TPFYAE+GG++ D+G Sbjct: 472 KII-----------------ALLHDGERVTEVAAGEEAQLLLDVTPFYAESGGEVADSGT 514 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G L + DVQK G +H +V GI + S+ ++ +R+ ++ NH+ATHLL Sbjct: 515 ITGPDFVLDVKDVQKAPNGQNLHTVVVRTGIALADASVHAAVEASSRQAITKNHTATHLL 574 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL LG+HV+Q GS ++ + LRFD +H +T+ EL +IE +VN I +L V Sbjct: 575 HKALKDTLGTHVNQAGSLVSAERLRFDFSHFGAVTAEELATIEQDVNQAIWASLAVEIEE 634 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 MN DA A GA AL G KY + VRVVS G +S LCGG HV +T EI L IVSE Sbjct: 635 MNIADAKAKGAMALFGEKYGETVRVVS-----AGTYSIELCGGIHVRNTAEIGLFKIVSE 689 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG RRIEA+TG A + G + L+ A LK V GR+E + + R+ + Sbjct: 690 SGIGAGTRRIEAVTGAGAYHVMNGHLQTLEQAARVLKTKTTEVPGRIEALQVQLRETERA 749 Query: 774 HAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 H + +L N+E S +I V ++ + D L+ +MD L+ + S II+L Sbjct: 750 HESLQAKLANIEAASLKDDVEQINGVQVLAKQVDVSDMDALRGMMDELKSSLGSAIIVL- 808 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G ++ K +++ V++DL+D+ ++A L + A GGGGGGRP MAQ+GG + K ++ Sbjct: 809 GSAQGDKVNLVASVSKDLIDQGYHAGKLIKEVATRC-GGGGGGRPDMAQAGGKDPAKLNE 867 Query: 888 AIAGVASFLK 897 A+A + +++ Sbjct: 868 ALAFTSHYVQ 877 >gi|283470895|emb|CAQ50106.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ST398] Length = 877 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 8 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT E ++ Sbjct: 68 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEKWMGMEP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 737 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875 >gi|220906096|ref|YP_002481407.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7425] gi|219862707|gb|ACL43046.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7425] Length = 889 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 356/911 (39%), Positives = 533/911 (58%), Gaps = 78/911 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF GH++LPS+SL+P DPT++ T +GM+PFK IF GQ++ TT Sbjct: 19 AEIRQRFLDFFAARGHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQEAEVPRATTS 77 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR +ND++NVGRT RHHTFFEMLGNFSFG YFK AI AW+L+T+ + L R Sbjct: 78 QKCVR----NNDIENVGRTARHHTFFEMLGNFSFGDYFKPDAIAWAWELVTEVYHLPADR 133 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ +D+EAF++W + GL +I R+ + NFW+ TGPCGPCSEI+FD Sbjct: 134 LVVSVFQDDDEAFEIWNQKIGLPPQRIRRMGEDSNFWAAGPTGPCGPCSEIYFD------ 187 Query: 185 GGLPGSSEEGE---------RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E GE R++E++NLVFMQ+ + + L +IDTGMGLERMA Sbjct: 188 ----FHPERGEQNIDLDDDSRFLELYNLVFMQYNRDAEGNLSPLKNKNIDTGMGLERMAQ 243 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILP 292 VLQ NNY+ DL +IQ + ++ + Y + ++ +VI DHLR+ +IADGI Sbjct: 244 VLQGVPNNYETDLIFPIIQKAAEIADLDYSKSTDSTKISLKVIGDHLRAVMHMIADGITA 303 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RR + + RL+G +P ++ +AYP + I+ L+ Sbjct: 304 SNVGRGYVLRRLIRRIVRHGRLIGIDKPFTAEVVETAIELAEAAYPNVRLKGDSIKAELQ 363 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E+E F KTLDRG LL ++S + GK +I +G AF LYDT+G PL++ Q+I + Sbjct: 364 REEESFLKTLDRGEKLLADIISRVQSKPGKQQI-SGQDAFTLYDTYGFPLELTQEIAAEQ 422 Query: 409 GLAGIDIISFNQALEEQRSRAR-AH-SLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D+ F +E+QR RAR AH ++ L GT +K L E T+F+GY Sbjct: 423 GLT-VDLEGFEAEMEQQRQRARDAHETIDLTVQGTLDK----LAEHIHTTEFLGY----- 472 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S+F SIV A++ +G+ V +G V++V DQTPFYAE+G Sbjct: 473 SQFSS------------------PSIVTALLVEGQTVTTVEAGTTVQIVLDQTPFYAESG 514 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G GD + ++I DVQK++ GIF+H+ VERG ++ + ID RR++ Sbjct: 515 GQIGDRGYLSGDTLLVRIEDVQKES-GIFIHYGRVERGSVQVNDRVTAQIDLSCRRRVQA 573 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATHLL AL ++ ++SQ GS ++ D LRFD +P+T+AEL++IED +N IA+ Sbjct: 574 HHTATHLLQSALKKLVDDNISQAGSLVSFDRLRFDFNCPRPVTAAELQAIEDQINTWIAE 633 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 P T ++ +A A GA A+ G KY VRV+ V GV S LCGGTHVS+T EI Sbjct: 634 AHPAQTSVLPIAEAKAKGAIAMFGEKYGSEVRVLDV----AGV-SMELCGGTHVSNTAEI 688 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L I++E+ + +GIRRIEA+ G +L ++ ++ L+ KV V RV + Sbjct: 689 GLFKIIAETGVASGIRRIEAVAGPAVLEYLNLRERVVRDLSDRFKVKPEEVPDRVTALQT 748 Query: 766 EYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKI 820 E + + QL K +L L D ++ + ++++ VD++ LK+ + L +K+ Sbjct: 749 ELKTTQKQLAELKNELALAKSDSLLAQVEAIGSFKVLVAQLEGVDAEALKTAAERLLQKL 808 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSG 878 G ++L + + +K +++ + + + + + ++ L GG GGGRP++AQ+G Sbjct: 809 APGAVVLASVPELEKVNLVAAFSSEAQQK--NLHAGKFIGEIAQLCGGKGGGRPNLAQAG 866 Query: 879 GPNGNKADQAI 889 G + K +AI Sbjct: 867 GRDAAKLPEAI 877 >gi|288819149|ref|YP_003433497.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] gi|288788549|dbj|BAI70296.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] gi|308752733|gb|ADO46216.1| alanyl-tRNA synthetase [Hydrogenobacter thermophilus TK-6] Length = 871 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 359/900 (39%), Positives = 530/900 (58%), Gaps = 55/900 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL FF+K GH + S+ L+P +DPTL+F N+GMVPFKN+F G EK Y Sbjct: 1 MFSTDEIRELFLSFFEKKGHVRVRSAPLVPESDPTLLFVNAGMVPFKNVFLGIEKRPYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKC+R GKHNDL++VG T+RHHTFFEMLGNFSFG YFK++AI+ AW+ +T+ L Sbjct: 61 AVSCQKCLRVSGKHNDLESVGYTSRHHTFFEMLGNFSFGDYFKKQAIEYAWEFITQYLKL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LYITV++EDEE +++W+ GL +I + DNFW M +TGPCGP SEI FD+G Sbjct: 121 PEDKLYITVFEEDEETYRIWRDDIGLEEGRIWKRGEEDNFWQMGDTGPCGPSSEIHFDKG 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 E EEGERY+E+WNLVFMQ+ + K LPK +IDTGMGLER+A+VLQ+ Sbjct: 181 E---------GEEGERYLEVWNLVFMQYNRDEKGNLTPLPKPNIDTGMGLERIASVLQKT 231 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGR 297 NY+ID+ + L+ E+++ +Y G + V RVI DHLR+ +F I+DG+LP+N GR Sbjct: 232 KTNYEIDIIRPLVAFGEELSQKRY-GESFEVDVALRVIADHLRAITFAISDGVLPSNVGR 290 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RRI+RRA+ YA LG EP + + + M AYPEL + ++ ++ E+E+ Sbjct: 291 GYVIRRILRRALRYAYKLGVQEPFLYRGIDLVVDIMKRAYPELETSIGFVKSVVKGEEEK 350 Query: 358 FGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F TL + +++ ++ G+ I +G F LYDT+G PLD+++DI +GL +D Sbjct: 351 FINTLKNAMPVVEEIIHKTLEEGRSSI-SGAQVFTLYDTYGFPLDMLEDIAREKGLY-VD 408 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F + +E QR +AR H + S + I+ LKE +QF+GYD ++ E + Sbjct: 409 MKGFEEQMELQREKARKH-FKITSKEVKPIYAHLKELGKTSQFVGYD-----QYQAETK- 461 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V AI++ G++V E G++ E+V ++TPFYAE GGQ+GD G Sbjct: 462 -----------------VIAIIKDGQMVSELKEGEEGELVLEKTPFYAERGGQVGDKGFI 504 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 G+G + D Q EG+ H + +G L+ + ID + R + NH+ATHLLH Sbjct: 505 RGEGAYFMVEDTQSPVEGVITHIGKLIKGSLKVMDQVHAIIDRERREDIRRNHTATHLLH 564 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 L +LG HV Q GS ++ LRFD TH + + L IE+ VN+ I QN V Sbjct: 565 AVLRHVLGDHVRQAGSLVSDQYLRFDFTHYEALDWDRLSRIEELVNEHIRQNYEVSVEET 624 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + AI GA A+ KY+DRVRV++V G S LCGGTHV TG+I IVSES Sbjct: 625 DYTKAIKEGAIAIFEEKYSDRVRVITV-----GEVSKELCGGTHVRRTGDIGYFKIVSES 679 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV---VGRVEEIWEEYRKLQ 771 S+ AG+RRI A TG+ A + L+ L+ L V Q ++ + R+E +E K + Sbjct: 680 SVGAGVRRIVAKTGRWAVEDAFREHRMLQELSISLGVKQEDIPDAIQRLERQLKEKEK-E 738 Query: 772 LIHAKRKL--QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + K L Q+ + L I + ++D+++L++ D ++ ++ ++ + Sbjct: 739 VARLKELLLEQMVQKQLKEELINGIRLYWGFFEDIDTEDLRNTADRIRSSSENCVVFFI- 797 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K ++ S L+ ++++L+ + +A ++ + KVL GGGGGGR +AQ GG N +AI Sbjct: 798 TKKGERLSTLLALSKNLVPKLSAKEMIKEVGKVL-GGGGGGREDLAQGGGTNLQAVGKAI 856 >gi|323439035|gb|EGA96767.1| alanyl-tRNA synthetase [Staphylococcus aureus O11] gi|323442822|gb|EGB00447.1| alanyl-tRNA synthetase [Staphylococcus aureus O46] Length = 877 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 525/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 8 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 68 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + + +EI NG AFKLYDT+G P+++ ++I Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKVTTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 737 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875 >gi|289523056|ref|ZP_06439910.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503599|gb|EFD24763.1| alanine--tRNA ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 880 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 348/902 (38%), Positives = 532/902 (58%), Gaps = 48/902 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FL +F++ H+ PS SLIP +DPTL+FT +GMVPFK F G +KP TT QK Sbjct: 9 LRELFLSYFEQKEHKRFPSFSLIP-DDPTLLFTIAGMVPFKPYFLGLKKPEVLRATTSQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT+RHHTFFEMLGNFSFG YFKERAI AW+ LTK LD R+Y Sbjct: 68 CLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKERAIPWAWEFLTKVIGLDPERMY 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y +D+EAF++W K+ GL KI+R+ DNFW+ GPCGPCSE+ +DQG G Sbjct: 124 ATIYLDDDEAFEIWNKVVGLPESKIVRMGEKDNFWAAGPIGPCGPCSELIYDQGPAFSCG 183 Query: 187 LPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P + +RY+E+WNLVFMQ+ + + LPK +IDTGMGLER+A+++Q +++ Sbjct: 184 KPDCFVGCDCDRYLEVWNLVFMQYNRDEEGNLTPLPKKNIDTGMGLERLASIVQGARSDF 243 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 + DLF LI+ +++G++Y + + RVI DHLR+ +F+IADG+LP+NEGRGYVLR Sbjct: 244 ETDLFLPLIEKVSRLSGVEYAADKRFDTAMRVIADHLRALAFMIADGVLPSNEGRGYVLR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RRA Y R+LG P ++ L+P L M Y EL++ + IE + E++RF +TL Sbjct: 304 RLLRRASRYGRVLGLDRPFLIELMPELLEIMADHYKELVEYRSTIESVINLEEKRFSRTL 363 Query: 363 DRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 D+G LL+ +S + + +L+G+ AF LYDT+G PL++ ++I +G+ +D F + Sbjct: 364 DQGSALLEEEISRVIRSGSSVLSGETAFTLYDTYGFPLELTEEICQEQGIE-VDREEFER 422 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +E QR AR S L S +++ +L K+G T+F+GY+ Sbjct: 423 CMERQREMARTASKQLASMAKKEVHSTLLAKFGPTKFVGYE------------------- 463 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 ++ S V AI++ VEEA G++VE++ +TPFYAE GGQ+GD G + Sbjct: 464 ----SDEAESKVLAILKDSREVEEAHEGEEVEILLAETPFYAEKGGQVGDKGWIETSTGK 519 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 L++ D + + H V+ G + + +D R + +H++TH++H AL+ + Sbjct: 520 LEVLDTYYYHDVLIAHRVRVKSGYVSADDEAKAKVDLSRRNAIRRHHTSTHIIHEALTRV 579 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG H+ Q GS ++P+ LRFD TH I+ ++ IE N++I N+ + + E+A Sbjct: 580 LGPHIRQAGSYVSPNYLRFDFTHFDAISRDDIVKIEQIANEVIQANIKLNIFETSMEEAK 639 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA A KY DRVRV+ + + + LCGG HV++TG+I L IV E SI +G+ Sbjct: 640 KIGAKAFFDEKYGDRVRVIQIP-----GYCAELCGGLHVNATGDIGLTKIVKEESIGSGL 694 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778 RRI A+ G A SH + ++ L V G++ + ++++E + L +L + K Sbjct: 695 RRITALAGMAAVSHYQELFDLVEDLTLISGVEAGSLKEKFTDVFQEIKNLKTELQRSNLK 754 Query: 779 LQLNVED--LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 L L+ D LS +I + ++ ++D+ L+ V D L+K ++ +++L S E K Sbjct: 755 LALSQCDKILSQRQIVNGFTLLTGKFEDLDADILRQVGDHLKKGLKKVLLVLGS-SFEGK 813 Query: 836 ASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 ++ + ED + D +A AK++ GGGGGRP++AQ+GG K + A+ V Sbjct: 814 VVLVAMADEDAVRDGIHAGKFINRVAKIV-DGGGGGRPNVAQAGGKKVEKLEDALNAVPR 872 Query: 895 FL 896 L Sbjct: 873 IL 874 >gi|196250079|ref|ZP_03148773.1| alanyl-tRNA synthetase [Geobacillus sp. G11MC16] gi|196210263|gb|EDY05028.1| alanyl-tRNA synthetase [Geobacillus sp. G11MC16] Length = 878 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 365/911 (40%), Positives = 531/911 (58%), Gaps = 60/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P + Sbjct: 7 AEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDNPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT E D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +TV+ EDEEA+ +W+ GL ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E +RY+E+WNLVF QF LPK +IDTGMGLERM ++L Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q+ N++ DLF +I+A+EQ+ G +Y + N V +VI DH+R+ +F + DG LP+NE Sbjct: 239 QDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I +R+E+ Sbjct: 299 GRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARVIRTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TL GL +L V+ K ++ G+ AF+LYDT+G PL++ ++ G++ + Sbjct: 359 ERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEAGMS-V 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F + +E QR RARA + S + + +K++ ++F+GYD L Sbjct: 418 DHAGFEREMERQRERARAARQDVDSMQVQGGVLGDIKDE---SRFVGYDELV-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 VSS V AI++ G+ VEE +G++ +++ D TPFYAE+GGQ+ D G Sbjct: 467 ---------------VSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQIADQG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + DVQK G +H +VERG ++ +D R Q+ NH+ATHL Sbjct: 512 VFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I +++PV Sbjct: 572 LHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIPVDIF 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 E+A A GA AL G KY D VRVV V G +S LCGG HV +T I L IVS Sbjct: 632 YKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG RRIEA+TG+ A + Q L+ A LK S + R++ ++ E R+LQ Sbjct: 687 ESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELRQLQR 746 Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + A R + E L+ ++ V ++ + D +L+++ D L++K+ + +I+L Sbjct: 747 ENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTAVIVL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K ++ VT+DL+ + ++A L + A GGGGGGRP MAQ+GG + NK Sbjct: 807 AAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKDANKVG 864 Query: 887 QAIAGVASFLK 897 +A+ V +++K Sbjct: 865 EALDYVETWVK 875 >gi|257460412|ref|ZP_05625513.1| alanyl-tRNA synthetase [Campylobacter gracilis RM3268] gi|257441743|gb|EEV16885.1| alanyl-tRNA synthetase [Campylobacter gracilis RM3268] Length = 847 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 359/901 (39%), Positives = 526/901 (58%), Gaps = 69/901 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR+ +L FF GH+++PS+ L+P +D +L+FTN+GMVPFK+IFTG +P T+ Q Sbjct: 3 IRSEYLNFFASKGHQIIPSAPLVP-DDDSLLFTNAGMVPFKSIFTGAVPRPTPPIRTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + +L Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKEQAIAYAWEFITEILKLPKDKL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---C 182 Y+TV+++D++A++ W + ++ ++I R +DNFW+M +TGPCGPCSEIF+DQGE Sbjct: 122 YVTVHEKDDKAYEFWAR--HIARERIYRFGDHDNFWAMGDTGPCGPCSEIFYDQGEEHFH 179 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 P G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + K + Sbjct: 180 SPEDYMGG--DGDRFLEIWNLVFMQYERSKDGKLSPLPKPSIDTGMGLERVTAIKEGKFS 237 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYD LF LI ++ G Y + ++RVI DH+RS FL+A G EGRGYVLR Sbjct: 238 NYDSSLFMPLIDEVAKLCGRPYVYESGASYRVIADHIRSVVFLLAQGTNFNREGRGYVLR 297 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + LLG EP M L+ +C MG Y L + K ++E ++ E+ERF TL Sbjct: 298 RILRRAVRHGYLLGIKEPFMYRLVDKVCELMGGHYAYLNEKKEAVKEQIKLEEERFFATL 357 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 G+ L + L+ EI +G+VAFKLYDT+G PLD+ D+L + L +D F+ + Sbjct: 358 ANGIELFNEELAR--TKEIFSGEVAFKLYDTYGFPLDLTADMLREKNLR-VDEAKFDALM 414 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EQR A+A G G + +L EK+G +F GY+ L Sbjct: 415 SEQRQIAKAAWKGSGDKNVRGDFKALLEKFGENKFSGYEEL------------------- 455 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIR 540 + S ++ + + V+E +G +FD TPFYA++GGQ GD+G +I D Sbjct: 456 ---SRTSKVLALLNEDFAEVDELKAGDIGWAMFDVTPFYAQSGGQTGDSGEVESIAD--- 509 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + D Q K G+ + H + R L+ + L + + R Q++ +HSATHLLH AL + Sbjct: 510 --VFDTQ-KFYGLNLSHLRLNRN-LKIGDIVGLKVS-EEREQIARHHSATHLLHAALRAV 564 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG+H++Q GS + D LRFD +H K ++ EL IE+ VN+ + + T IM+ +DA Sbjct: 565 LGAHIAQAGSLVEADRLRFDFSHPKALSDEELAKIEEFVNNAVCKGCAAKTEIMDIDDAK 624 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA AL G KY +VRVVS G S LCGG HV + EI +IV ES + AG+ Sbjct: 625 NSGAIALFGEKYGSKVRVVSF-----GEISKELCGGIHVRNLSEIGSFFIVKESGVSAGV 679 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778 RRIEA+ + A + + KL +++ LK + + +E++ +E R L Q+ HA Sbjct: 680 RRIEAVCSRAALNLALQNRAKLAEISAELKGIE--PLRAIEKLKDEIRSLKDQIKHAS-- 735 Query: 779 LQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 S H +A +N ++ V+S ++K+++D + + IML+ + + K Sbjct: 736 --------SSHALAFLNVGDTKLCVASVESGDIKTMIDEFKNSHEKAAIMLMQVGADGKI 787 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 S+ V + A + +L A++L GGGGGGR A +GG + K ++AI S+ Sbjct: 788 SIAAGVKNAPI---KAGEWVKLVAQIL-GGGGGGRDDFATAGGKDVLKIEEAIKEAISYA 843 Query: 897 K 897 K Sbjct: 844 K 844 >gi|46907732|ref|YP_014121.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 4b F2365] gi|59798548|sp|Q71ZG6|SYA_LISMF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|46881001|gb|AAT04298.1| alanyl-tRNA synthetase [Listeria monocytogenes serotype 4b str. F2365] Length = 879 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 365/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +VEE +G + +V+F +TPFY Sbjct: 464 S----------------------TEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKLEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 ++ + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 +D + K GI++L + +K + V E + ++A L + A GG GGGR Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ+GG N + A+ V++++K+ Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876 >gi|218132498|ref|ZP_03461302.1| hypothetical protein BACPEC_00357 [Bacteroides pectinophilus ATCC 43243] gi|217992608|gb|EEC58610.1| hypothetical protein BACPEC_00357 [Bacteroides pectinophilus ATCC 43243] Length = 868 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 353/895 (39%), Positives = 518/895 (57%), Gaps = 48/895 (5%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 +L+FF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT QKC+R Sbjct: 2 YLDFFESKGHLKMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTTCQKCIRT 61 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130 G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD RLY +VY Sbjct: 62 G----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDASRLYPSVY 117 Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190 +D+EAF +W K G++ ++I R DNFW +GPCGPCSEI++D+GE G PG Sbjct: 118 VDDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKYGCGKPGC 176 Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248 + + +RY+E+WN VF QF L + +IDTGMGLER+A V+Q+ + +D+D Sbjct: 177 TVGCDCDRYMEVWNNVFSQFNNDGHGNYSDLIQKNIDTGMGLERLAVVVQDVDSIFDVDT 236 Query: 249 FKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306 + L ++ G+ Y+ + V+ RVI DH+RS +F+++DGI+P+NEGRGYVLRR++R Sbjct: 237 LQALRNKVCEMAGVTYKEDEKTDVSIRVITDHIRSVTFMVSDGIMPSNEGRGYVLRRLLR 296 Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366 RA + RLLG + L + YPEL + K I + + E+++F KT+D+GL Sbjct: 297 RAARHGRLLGIEGKFLSKLCETVIEGSKDGYPELDEKKAFIFKVIDQEEDKFNKTIDQGL 356 Query: 367 VLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 +L+ + + L K ++IL+G AFKLYDT+G PLD+ ++IL +G+ ID F A+EE Sbjct: 357 GILEQLEADLVKTGNKILSGADAFKLYDTYGFPLDLTKEILEEKGIT-IDEEGFKSAMEE 415 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 QR +AR + + + + F+GYD L Sbjct: 416 QRIKARTARKTTNYMGADATVYDEIDPAITSSFVGYD---------------------KL 454 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 TN S V + + +VE G + +V D+T FY GGQ GD G ++ Sbjct: 455 TN--QSKVSVLTTEENVVEALSDGDRGTIVVDETVFYGSMGGQEGDRGVITSPEGEFRVD 512 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 G H ++ +G+++T ++ LT+D R NHSATHLL AL +LG+H Sbjct: 513 TTIHLKGGRIGHVGVMTKGMIKTGDTVTLTVDAPARAATCANHSATHLLQKALRDVLGTH 572 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 V Q GS + PD LRFD H + +T E+ S+E VN+ IA+ LPVVT IM+ EDA +GA Sbjct: 573 VEQKGSYVDPDRLRFDFAHFQAMTPDEIASVESIVNEKIAEALPVVTNIMSLEDAKKTGA 632 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 AL G KY D+VRVVS+ G S+ LCGGTHV++T IML IVSES + AGIRRIE Sbjct: 633 MALFGEKYGDKVRVVSM-----GDFSTELCGGTHVANTSNIMLFKIVSESGVAAGIRRIE 687 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784 A+TG ++ + L K ++ R+ + +E + L + K K +L E Sbjct: 688 ALTGNGVLAYYRNIENTLAEACRTAKTEPSQLIHRIASMNDEIKSLSSENEKLKAKLANE 747 Query: 785 DL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 + + +I F+ +++VD L+++ D ++ KI SGI++L ++ K +++ Sbjct: 748 AVGDVLANVQEIGSFRFLPVSVADVDMNGLRTLGDNMKDKIGSGIVILAS-TQGDKVNII 806 Query: 840 IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 + T+D + + +A +L + A ++ GGGGGGRP+MAQ+GG N D+ +A A Sbjct: 807 AMATDDAVAKGAHAGNLIKAVAPIV-GGGGGGRPNMAQAGGKNPAGIDEMLAKAA 860 >gi|167746982|ref|ZP_02419109.1| hypothetical protein ANACAC_01694 [Anaerostipes caccae DSM 14662] gi|167653942|gb|EDR98071.1| hypothetical protein ANACAC_01694 [Anaerostipes caccae DSM 14662] Length = 868 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 350/906 (38%), Positives = 513/906 (56%), Gaps = 76/906 (8%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 FL+FF+ H ++ S SL+P ND +L+ N+GM P K FTGQE P V T QKC+R Sbjct: 2 FLDFFESKDHLVMKSFSLVPQNDKSLLLINAGMAPLKPYFTGQEVPPKTRVATCQKCIRT 61 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130 G D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+ LD RLY +VY Sbjct: 62 G----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPERLYPSVY 117 Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190 +D+EAF++W+K G++ ++I R DNFW GPCGPCSEI++D+GE G P Sbjct: 118 LDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGSPDC 176 Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248 + E +RY+E+WN VF QFE L +IDTGMGLER+A V+QE + +D+D Sbjct: 177 TVGCECDRYMEVWNNVFTQFENDGNGNYEELDNKNIDTGMGLERLAVVVQEVDSIFDVDT 236 Query: 249 FKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306 K + ++ G+ Y + N ++ RVI DH+RS+SF+I+DG++P+NEGRGYVLRR++R Sbjct: 237 IKAIRDRICELAGVTYGADEKNDISIRVITDHIRSASFMISDGVMPSNEGRGYVLRRLIR 296 Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366 RA + R+LG + + L + E YPEL + + I + L +E+E+F +T+D+GL Sbjct: 297 RAARHGRMLGMKDLFLAGLSKTVIAESKDGYPELKEKEEFIYKVLTTEEEQFNRTIDQGL 356 Query: 367 VLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +L + +S GK E L G AFKLYDT+G PLD+ ++IL +G++ +D F +A+E Sbjct: 357 QILADMEEAMSREGKKE-LAGKDAFKLYDTYGFPLDLTKEILEEKGIS-VDETGFQRAME 414 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 +QR +AR + + + ++F+GYD L C+ Sbjct: 415 QQRKQAREARETTNYMGADATVYEQLDPAMTSEFVGYDTL------------TCE----- 457 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S I+ Q E+ + V GQ+ ++ +TPFYA +GGQ D G + + + Sbjct: 458 -----SEIIAMTTDQ-ELTDSLVEGQRGTIICSRTPFYATSGGQEADQGVILSENSSFAV 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 DV K + G F H V G L ++L ++ +NRRQ NHSATHLL AL T+LGS Sbjct: 512 EDVIKLSGGKFGHVGYVNEGNLSVGEKVLLNVNERNRRQTEKNHSATHLLQKALRTVLGS 571 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS LRFD TH P+T E+K +E VN+ IA +LPV T++M+ ++A +G Sbjct: 572 HVEQAGSSNNAKHLRFDFTHFSPMTPEEIKKVEHIVNEEIAASLPVETKLMSMDEAKNTG 631 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRVVS+ G S LCGGTHV++TG I I+SE+ I AG+RRI Sbjct: 632 AMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVANTGSITAFKILSETGIAAGVRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EAIT + + +E+L + +K + ++ R+E + E ++L + K +L Sbjct: 687 EAITDKAVFEYYEKMEEELMEASKVVKSTPAKLMARLEALMTELKELHSENESLKSKLAK 746 Query: 784 EDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + L ++ DVN ++ +++VD L+ + D+L++K+ G+I+L Sbjct: 747 DALGDVMDQVQDVNGVKLLAAKVADVDMNGLRELGDSLKEKLGEGVIVLAS--------- 797 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGG--------------GRPHMAQSGGPNGNK 884 L + V +A A+ G G GRP+MAQ+GG Sbjct: 798 ------SLGGKVFLVAMATDGAQKAGAHAGNLIKGIAGCVGGGGGGRPNMAQAGGKKPEG 851 Query: 885 ADQAIA 890 D AIA Sbjct: 852 IDDAIA 857 >gi|159900152|ref|YP_001546399.1| alanyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779] gi|205830067|sp|A9B660|SYA_HERA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|159893191|gb|ABX06271.1| alanyl-tRNA synthetase [Herpetosiphon aurantiacus ATCC 23779] Length = 889 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 349/902 (38%), Positives = 502/902 (55%), Gaps = 60/902 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL++F + GH ++PSSSLIP ++PTL+FT +GMV F ++F G+E Y + Sbjct: 4 SELRQRFLDYFARQGHAVVPSSSLIPADNPTLLFTVAGMVQFNDVFLGRESRPYSRAVSS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GK NDL+NVG + RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+E LD +R Sbjct: 64 QKCLRISGKQNDLENVGPSPRHHTFFEMLGNFSFGDYFKKDAIRFAWEFLTQEIGLDPKR 123 Query: 125 LYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +++++Y+ DEEA LW ++ + A++I+R DN WS + GP GPCSEI + Sbjct: 124 MWVSIYEGDEQIPADEEAHDLW--LAYMPAERILRFDAKDNLWSAGDVGPRGPCSEIHYY 181 Query: 179 QGECIPGGLP-GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G+ +P G + E + Y+EIWNLVFMQ+ + +LPK SIDTGM LER+A V Sbjct: 182 IGDDPDNQVPEGVNSEDDTYMEIWNLVFMQYNRDENGVLTLLPKPSIDTGMSLERLAIVK 241 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGM---KYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 Q +Y+ DLF +I ++ G Y+ N+ H V+ DH RS +F+IADG+ P N Sbjct: 242 QGVFRSYETDLFTPIIHTVMELLGTGSDHYQANSSAYH-VVADHSRSIAFMIADGLRPGN 300 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGR YVLRR++RRA + + +G+ P + + + MG+AYPEL + I E + E Sbjct: 301 EGRSYVLRRLVRRAAYFGQTIGFKAPFLAETIATVIDMMGAAYPELRSKQAYIAEVVTGE 360 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF KTL GL L+ +L + + +G AFKLYDT+G PLD+ + I+ RGL +D Sbjct: 361 EERFNKTLAGGLRQLEAMLPNQADKAVFSGADAFKLYDTYGFPLDLTERIVAERGLT-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + + LE QR+R R + TE+ W + T F GY+ L Sbjct: 420 LAGYEAELEAQRARGRGAAQFKKGAVTER-W--AERNLAPTSFTGYNELESWGH------ 470 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V A+ GE + GQ+V V D+TP YAE+GGQ+GD+G Sbjct: 471 -----------------VLALEFDGEELGTVQRGQEVAFVLDRTPCYAESGGQMGDSGVL 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +G + I DVQK G+FVH V +G + + +T+D RR + NH+ATHLLH Sbjct: 514 VGPHGTIVIDDVQKPVPGVFVHRGKVSKGSVSLGEQVTVTVDAARRRDIVRNHTATHLLH 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL LG H Q GS + P+ LRFD + K ++S +L+ IED VN I + V M Sbjct: 574 RALRDTLGDHAEQKGSLVAPERLRFDFNNQKGLSSEQLQQIEDQVNAWIRADSKVEAAEM 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH----------SSALCGGTHVSSTGE 704 A GA AL G KY D VRVV+V + H S LCGG HV+ TGE Sbjct: 634 ALPQARELGAMALFGEKYGDVVRVVTVGCGNASDHIHTNSEAPVCSRELCGGVHVARTGE 693 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I IVSE S+ +G+RRIEA+TG+ A + Q + +++L L G V +++ + Sbjct: 694 IGFFKIVSEGSVASGVRRIEAVTGRAAAEWVSQQAQLIRTLGDKLGAQPGKVEEKLDALL 753 Query: 765 --EEYRKLQLIHAKRKLQL-NVEDLSCHKI--ADVNFMSHIISEVDSKELKSVMDALQKK 819 ++ R+ ++ + ++ V+ L KI A + + D+ + + + L+ K Sbjct: 754 LDQKARRDEIERLRGEIAAGQVDSLLAQKIEQAGTPLVVARVEASDADSFRRLGEQLRDK 813 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 I SG+++L G + K +L T D + R + L+AKV GGGGGR AQ+ Sbjct: 814 IGSGVVIL-GTVIDGKPLLLAAATADQVKAGRHAGNLVKALAAKVG--GGGGGRADFAQA 870 Query: 878 GG 879 GG Sbjct: 871 GG 872 >gi|258424044|ref|ZP_05686926.1| alanyl-tRNA synthetase [Staphylococcus aureus A9635] gi|257845665|gb|EEV69697.1| alanyl-tRNA synthetase [Staphylococcus aureus A9635] Length = 877 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 8 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 68 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSNDQVVDKLTQ 737 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875 >gi|262048613|ref|ZP_06021496.1| alanyl-tRNA synthetase [Staphylococcus aureus D30] gi|259163260|gb|EEW47819.1| alanyl-tRNA synthetase [Staphylococcus aureus D30] Length = 876 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 525/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAI 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY+D VRVV++ S LCGG HV +T Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYSDVVRVVNM-----APFSIELCGGIHVRNTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874 >gi|49483863|ref|YP_041087.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425743|ref|ZP_05602167.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428403|ref|ZP_05604801.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431041|ref|ZP_05607420.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397] gi|257433727|ref|ZP_05610085.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410] gi|257436642|ref|ZP_05612686.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876] gi|282904199|ref|ZP_06312087.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus C160] gi|282906025|ref|ZP_06313880.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Btn1260] gi|282914423|ref|ZP_06322209.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M899] gi|282919393|ref|ZP_06327128.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427] gi|282924718|ref|ZP_06332386.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101] gi|283958379|ref|ZP_06375830.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|293503498|ref|ZP_06667345.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424] gi|293510515|ref|ZP_06669221.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809] gi|293531055|ref|ZP_06671737.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015] gi|56749413|sp|Q6GG85|SYA_STAAR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|49241992|emb|CAG40689.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271437|gb|EEV03583.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275244|gb|EEV06731.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278244|gb|EEV08886.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 68-397] gi|257281820|gb|EEV11957.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus E1410] gi|257283993|gb|EEV14116.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M876] gi|282313553|gb|EFB43948.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C101] gi|282317203|gb|EFB47577.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus C427] gi|282321604|gb|EFB51929.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M899] gi|282331317|gb|EFB60831.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595817|gb|EFC00781.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus C160] gi|283790528|gb|EFC29345.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920323|gb|EFD97389.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus M1015] gi|291095164|gb|EFE25429.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 58-424] gi|291466879|gb|EFF09399.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus M809] gi|315195518|gb|EFU25905.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS00] Length = 876 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 622 WKGIDVNIQEMDIVSAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV N VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDNQVVDKLTQ 736 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874 >gi|282916887|ref|ZP_06324645.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139] gi|283770692|ref|ZP_06343584.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19] gi|282319374|gb|EFB49726.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus D139] gi|283460839|gb|EFC07929.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus H19] Length = 876 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 525/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + + +EI NG AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKVTTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGLVQFGQVNVGATVSAEVNQNDRRDI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874 >gi|302333292|gb|ADL23485.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JKD6159] Length = 876 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 350/924 (37%), Positives = 526/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPSEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + + +EI +G AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKVTTNEI-SGKDAFKLYDTYGFPIELTEEIAVQA 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S + I F A+ F+GYD Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEVLKNITF-------ASTFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874 >gi|283955931|ref|ZP_06373421.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336] gi|283792591|gb|EFC31370.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 1336] Length = 842 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 356/892 (39%), Positives = 516/892 (57%), Gaps = 72/892 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IRKAYLDFFASKGHEVTPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 Y+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQGE Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175 Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 SSE+ G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K Sbjct: 176 EHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGK 235 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +N+D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYV Sbjct: 236 FSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYV 295 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF Sbjct: 296 LRRILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLS 355 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 T++ G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F Sbjct: 356 TIENGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFEL 412 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQ++RA+A G G T + +L EK+G F+GY+ K C+ Sbjct: 413 LMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESK 460 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + L + V + G V+ + TPFYA +GGQ D+G + Sbjct: 461 ILALLDEEFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AK 504 Query: 541 LQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK ++ + ++ G L+ + ID + R Q++ +HSATHLLHHAL Sbjct: 505 REVLDTQK---FFNLNLSFIKAGEELKVGDIVHAKIDTEKREQIARHHSATHLLHHALRE 561 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSHVSQ GS + + LRFD TH K ++ EL+SIE VN++I + + M E+A Sbjct: 562 ILGSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEA 621 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG Sbjct: 622 KKSGAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAG 675 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRK 778 +RRIEA+ + A + Q E+L LK +++ ++++ E L+ + K Sbjct: 676 VRRIEAVVSKAALEFVKNQLEELSKAKDELK--NNDILSGLKKLKNEILSLKNELKNSSK 733 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 +L+ +++ +I + VD+ ++K+++D + K +I+L+ + EK Sbjct: 734 TELDSKNIQGVEIC--------VKRVDNGDIKAMIDDFKNKFAKAVILLIQVKDEK---- 781 Query: 839 LIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I + + D A L + +A++L GG GGGR A +GG + NK D+A+ Sbjct: 782 -ITLAAGVKDVPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLNKIDEAL 831 >gi|282908937|ref|ZP_06316755.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911255|ref|ZP_06319057.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WBG10049] gi|295428195|ref|ZP_06820827.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590838|ref|ZP_06949476.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8] gi|282324950|gb|EFB55260.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327201|gb|EFB57496.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus WW2703/97] gi|295128553|gb|EFG58187.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575724|gb|EFH94440.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus MN8] gi|312437914|gb|ADQ76985.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH60] Length = 877 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 8 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 68 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 623 WKGIDVNIQEMDIVSAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV N VV ++ + Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDNQVVDKLTQ 737 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875 >gi|329767041|ref|ZP_08258569.1| alanyl-tRNA synthetase [Gemella haemolysans M341] gi|328837766|gb|EGF87391.1| alanyl-tRNA synthetase [Gemella haemolysans M341] Length = 873 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 345/914 (37%), Positives = 525/914 (57%), Gaps = 83/914 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF + GH++ PS+SL+P +DPTL++ NSG+ K F G+E P +T Sbjct: 7 TQIRRMYLDFFVEKGHKIEPSASLVPVDDPTLLWINSGVATLKKYFDGREIPENPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK A+ AW+ LT E L++ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKNEAVPWAWEFLTSEKWLGLEK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 +L +T++ ED EA+ LW + GL D+IIRI N FW + E GP GP +EIF+D+GE Sbjct: 123 EKLSVTIHPEDTEAYDLWHNVIGLPEDRIIRIEGN--FWDIGE-GPSGPNTEIFYDRGED 179 Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E +RY+E+WN+VF Q+ LP +IDTGMGLER Sbjct: 180 ADTWSPKEEMYPGG------ENDRYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 + +VLQ+ N+D DLF +I+ E+++G KY N V +VI DH+R+ +F IADG Sbjct: 234 IVSVLQDVPTNFDTDLFIPIIREIEKLSGAKYGVNAEQDVAFKVIADHIRTVAFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++LG + M L + M YP + ++ +++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLGLNKSFMYKLTDVVAEIMEDYYPNVKESANFVKDV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E++RF +TL+ G +L+ + + KD ++++G AFKLYDT G P+++ ++ Sbjct: 354 ILKEEDRFHETLNEGEAILNNIAKEV-KDTTKVISGKDAFKLYDTFGFPIELTEEYAEEL 412 Query: 409 GLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +DI FN+ +E+Q+ RAR+ S+ + S +I G ++F GY L Sbjct: 413 GLT-VDIDGFNEEMEKQKERARSSRQEDSSMQVQSDLYNRI-------VGDSEFTGYTKL 464 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYA 522 ++ K+L AIV + + + E G++ V+VVFD+TPFYA Sbjct: 465 ------TDEGKLL-----------------AIVDKDDNLLENYKGEENVKVVFDKTPFYA 501 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+ D G + +G + ++ DV+K + +H V G L L +D R Sbjct: 502 ESGGQVADRGLVLAEGFKAEVIDVKKLPDKRHIHLVKVLEGELVVGKEYKLEVDRAYRLN 561 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NH+ATHLL+ AL +GSH+ Q GS +T + LRFD+TH P+T E++ +E VN Sbjct: 562 IEKNHTATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQ 621 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I L + T M +A GA AL G KY D VRVVS+ G +S LCGGTH +++ Sbjct: 622 IWNALEIKTEEMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNANS 676 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 E+ + IVSES + AG+RRIEA+TG+ A +L Q+E L+S+ K + NVV +V Sbjct: 677 AEVGIFKIVSESGVAAGVRRIEALTGKAAYEYLREQEETLRSVEKLTKANVSNVVEKVSG 736 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDA 815 + E +KL K LQ + + + + + VN ++ ++ + LK ++D Sbjct: 737 LQSEIKKLA--KEKESLQQKIANAELNNLVNNIKEVNGVNVLTSVVESENMNHLKQLVDN 794 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 + K+++ +I ++ E K + ++ V + + D++NA L + A V G GGGRP MA Sbjct: 795 AKSKLENYVIAFASVN-EDKVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMA 852 Query: 876 QSGGPNGNKADQAI 889 Q+G N + D+A Sbjct: 853 QAGAKNKDNIDKAF 866 >gi|258446862|ref|ZP_05695016.1| alanyl-tRNA synthetase [Staphylococcus aureus A6300] gi|257854437|gb|EEV77386.1| alanyl-tRNA synthetase [Staphylococcus aureus A6300] Length = 876 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 350/924 (37%), Positives = 525/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ + S LCGG HV +T Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----ALFSIELCGGIHVRNTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S +KV S VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQ 736 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874 >gi|253733131|ref|ZP_04867296.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|253728887|gb|EES97616.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TCH130] gi|329733217|gb|EGG69554.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21193] Length = 877 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 8 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 68 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGTTVSAEVNQNDRRDI 562 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 737 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875 >gi|255311581|ref|ZP_05354151.1| alanyl-tRNA synthetase [Chlamydia trachomatis 6276] gi|255317882|ref|ZP_05359128.1| alanyl-tRNA synthetase [Chlamydia trachomatis 6276s] Length = 875 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 333/887 (37%), Positives = 491/887 (55%), Gaps = 55/887 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y TT Sbjct: 4 NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 64 QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFDPDF 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RGYVL Sbjct: 242 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F KT Sbjct: 302 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL ++G+ AFKL DT+GLP+D + +L ID+ +F + Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 E + R+R ++ + + F + ++FIGYD L F Sbjct: 421 EVEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF------------- 465 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 ++ I++ EI G + ++ TPFYA GGQ+GD+G + Sbjct: 466 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESGTF 515 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL L Sbjct: 516 LVSHTIAPKTGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 575 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D ++ Sbjct: 576 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 635 Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 S G KY D VRVVS + S LCGGTH +TG+I I E ++ GI Sbjct: 636 SSEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771 RRIEA TG+ A + QD L +A+ ++ + ++ ++ + EE + L Q Sbjct: 690 RRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQ 749 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 L+ + K L SC KI D +++ + ++E + + ++ +A+ K+I + I L Sbjct: 750 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876 K + VL V++DL R V L A++L GG GG+ AQ Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 850 >gi|222151505|ref|YP_002560661.1| alanyl-tRNA synthetase homolog [Macrococcus caseolyticus JCSC5402] gi|222120630|dbj|BAH17965.1| alanyl-tRNA synthetase homolog [Macrococcus caseolyticus JCSC5402] Length = 874 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 361/925 (39%), Positives = 529/925 (57%), Gaps = 89/925 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+ P +T Sbjct: 7 AEIRQMYLDFFVEKGHMIEPSAPLVPIDDDTLLWINSGVATLKKYFDGRVIPSNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT E ++ Sbjct: 67 QKSIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSERWMAIEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ LW GL+ D+I RI NFW + E GP GP +EIF+D+GE Sbjct: 123 EKLYVTIHPEDTEAYDLWVNEIGLTDDRITRI--EGNFWDIGE-GPSGPNTEIFYDRGES 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LPK +IDTGMGLER Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNPDHTYSPLPKQNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 MA++ Q+ NYD DLF +I+A+EQ++G KY N + V +VI DH+R+ SF I DG Sbjct: 234 MASISQDVPTNYDTDLFMPIIKATEQISGRKYRDNKEDDVAFKVIADHIRTVSFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ +A+ + +P M L+ + M YP++ + K I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRFAQKIDINKPFMYDLVDIVAAIMKPYYPDVDKNKDFIKKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE++RF +TL+ GLV + + S D +L G+ FKLYDT G P+++ +++ G Sbjct: 354 VKSEEDRFHETLEEGLVQFNALKDSAKASDNVLKGEDVFKLYDTFGFPVELTEELAEEAG 413 Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 + +D F A+E QR+RAR S+ + + I S + F+GYD L Sbjct: 414 VE-VDHEGFEVAMEAQRTRAREARQKTQSMQVQNEVLSNIRVS-------STFVGYDTLT 465 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 V + + A++Q G VEEA V+ + +TPFYA + Sbjct: 466 -----------------------VDTNIIALLQDGVEVEEADDRSDVQFIMAETPFYAVS 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ DTG G+G +++T+V K G +H V G + T+ ++ ++ + R + Sbjct: 503 GGQVADTGTVTGEGFEIEVTEVTKAPNGQNLHTGTVRFGKV-TKSAVNAAVNAEFRTFVI 561 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHL+H AL +LG+HV+Q GS +TP+ LRFD +H P+T E+ +E VN+ I Sbjct: 562 KNHSATHLMHQALKDVLGTHVNQAGSLVTPERLRFDFSHFGPVTKEEIAKVEQIVNEKIW 621 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 QN+ V M +A A GA AL G KY D VRV VE D +S LCGG HV +TGE Sbjct: 622 QNIHVEINEMPISEAKAKGAMALFGEKYGDIVRV--VEMSD---YSIELCGGVHVRNTGE 676 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763 I L IVSES AG+RRIEA+T + A S+L + + +L +KV ++ + +V EI Sbjct: 677 IGLFKIVSESGTGAGVRRIEAVTSKAAFSYLSEYVDTVDTLLPVVKVKAKEQLTEKVNEI 736 Query: 764 WEEYRKLQLIHAKRKLQLNVE-------DLSCHKIADVNFMSHIISEV---DSKELKSVM 813 ++ + K+ +QLN E D+S + I ++N + + +EV D+K L+ +M Sbjct: 737 TSMVKEQE----KQIVQLNKEISALKMGDIS-NNIQEINGIKVLSTEVEVQDAKMLRELM 791 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q +I LV + K + + V + L D+ A DL + A+ GG GGGRP Sbjct: 792 DDYKSKVQDAVIFLVAAT--DKLNYMASVPKALTDKVKAGDLIKAVAQET-GGKGGGRPD 848 Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898 AQ G PN +A+ V S++ + Sbjct: 849 SAQGGAPNPKDVTKALQFVNSYINQ 873 >gi|15605482|ref|NP_220268.1| alanyl-tRNA synthetase [Chlamydia trachomatis D/UW-3/CX] gi|76789490|ref|YP_328576.1| alanyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13] gi|237805100|ref|YP_002889254.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT] gi|6707747|sp|O84754|SYA_CHLTR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123606616|sp|Q3KKU4|SYA_CHLTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|6578113|gb|AAC68344.2| Alanyl tRNA Synthetase [Chlamydia trachomatis D/UW-3/CX] gi|76168020|gb|AAX51028.1| alanyl-tRNA synthetase [Chlamydia trachomatis A/HAR-13] gi|231273400|emb|CAX10315.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/TZ1A828/OT] gi|296436296|gb|ADH18470.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/9768] gi|296438155|gb|ADH20316.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/11074] gi|297140656|gb|ADH97414.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/9301] Length = 875 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 333/887 (37%), Positives = 491/887 (55%), Gaps = 55/887 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y TT Sbjct: 4 NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 64 QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFDPDF 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RGYVL Sbjct: 242 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F KT Sbjct: 302 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL ++G+ AFKL DT+GLP+D + +L ID+ +F + Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 E + R+R ++ + + F + ++FIGYD L F Sbjct: 421 EVEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF------------- 465 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 ++ I++ EI G + ++ TPFYA GGQ+GD+G + Sbjct: 466 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESGTF 515 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL L Sbjct: 516 LVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 575 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D ++ Sbjct: 576 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 635 Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 S G KY D VRVVS + S LCGGTH +TG+I I E ++ GI Sbjct: 636 SSEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771 RRIEA TG+ A + QD L +A+ ++ + ++ ++ + EE + L Q Sbjct: 690 RRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQ 749 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 L+ + K L SC KI D +++ + ++E + + ++ +A+ K+I + I L Sbjct: 750 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876 K + VL V++DL R V L A++L GG GG+ AQ Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 850 >gi|229062084|ref|ZP_04199409.1| Alanyl-tRNA synthetase [Bacillus cereus AH603] gi|229169132|ref|ZP_04296847.1| Alanyl-tRNA synthetase [Bacillus cereus AH621] gi|228614360|gb|EEK71470.1| Alanyl-tRNA synthetase [Bacillus cereus AH621] gi|228717236|gb|EEL68911.1| Alanyl-tRNA synthetase [Bacillus cereus AH603] Length = 880 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 357/913 (39%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGES 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L E ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKALIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVAI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|153953949|ref|YP_001394714.1| alanyl-tRNA synthetase [Clostridium kluyveri DSM 555] gi|219854563|ref|YP_002471685.1| hypothetical protein CKR_1220 [Clostridium kluyveri NBRC 12016] gi|205830035|sp|A5N7T5|SYA_CLOK5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146346830|gb|EDK33366.1| AlaS [Clostridium kluyveri DSM 555] gi|219568287|dbj|BAH06271.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 879 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 338/908 (37%), Positives = 529/908 (58%), Gaps = 50/908 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+K H LPS SL+P ND +L+ N+GM P K FTG + P + V T Sbjct: 6 LNQIREMYLSFFEKKAHLRLPSFSLVPQNDKSLLLINAGMTPLKPYFTGLKVPPSKRVAT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L + Sbjct: 66 CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKKEAIPWAWEFITEVLKLPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY+T+Y +D+EA+ +W K + + KI R+ DNFW GPCGPCSEI++D+ + Sbjct: 122 RLYVTIYLDDDEAYDIWVKSTDVDPSKIFRLGKEDNFWEHG-VGPCGPCSEIYYDRAQEK 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + E + ++ +E WNLVF QF++ L +IDTGMGLERMAT++Q + Sbjct: 181 INSVEEFVEAADNDKIVEFWNLVFTQFDKDENGNYNRLSNPNIDTGMGLERMATIMQGEN 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +++D +++ ++G KY NN ++ R+I DH+RS +F+I+DGILP+NEGRGY Sbjct: 241 SIFEVDTINAILKEVCNISGTKYNEHKNNDISIRIITDHIRSITFMISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + + LG + + L + +YP+L K I++ +R E+ERF Sbjct: 301 VLRRLLRRAAKHGKSLGIDDRFLYKLSNVVIDNSCESYPKLKDRKEYIKKVIRLEEERFD 360 Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D G+ +L+ + L +L G+ AFKLYDT+G P+++ ++IL + + G+D+ Sbjct: 361 ETIDSGMKILNEFIEELENSNSLLLEGEKAFKLYDTYGFPIELTEEILQEKNM-GVDLEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 FN+ ++ Q+ AR+ E + Y T F GY+ L + Sbjct: 420 FNKKMQNQKEMARSARTETNYMGAEDTVLNKIPLYIDTVFEGYNSLEST----------- 468 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S VK ++++GE V G+K ++ TPFYAE GGQ+GD G + Sbjct: 469 ------------SKVKLMIKEGEFVSLLSQGEKGVILVANTPFYAEMGGQVGDKGIIYNE 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +I D + G +H V G + E +++L +D R + NH++THLL AL Sbjct: 517 NFEGKIIDCKNNVAGKILHFVEVISGSVSLEDTVLLKVDKNRRDDIRRNHTSTHLLGEAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV Q+GS + LRFD H + + +L+ +E+ VN+ I + V T +M+ E Sbjct: 577 RRVLGEHVHQSGSYVDEHRLRFDFNHFESLNDKQLREVEELVNENIRKAKTVNTNLMSLE 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A SGA A+ +KY+D VRVVS+ G S LCGGTHV ++GEI L IVSE+ I Sbjct: 637 EAKKSGAVAIFDSKYSDEVRVVSI-----GDFSRELCGGTHVGNSGEIGLFKIVSEAGIA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHA 775 AGIRRIEA+TG+ A +L + + LK +A+ K S+ +V +++ + E R+L +L Sbjct: 692 AGIRRIEAVTGREAVEYLYSKSDMLKEIANKFKCSEKEIVHKLDLQFNELRELRKELEEF 751 Query: 776 KRKLQLNVED--LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K KL + E+ L+ KI +N + I+ +VD L+ + D ++ K Q+ +++L G + Sbjct: 752 KIKLAGSAEESILNGVKIVKGINLFTGILKDVDGNALRELADKIRSKSQNAVVLL-GSNA 810 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E K +++ + T+D +++ V ++ + GGGGGGRP MAQ+GG +K ++AI Sbjct: 811 EGKVNLVAMATKDAVEK--GVHCGKIIKEVAAVAGGGGGGRPDMAQAGGKFPDKLEEAIG 868 Query: 891 GVASFLKK 898 ++ ++K Sbjct: 869 KCSAIMEK 876 >gi|161509845|ref|YP_001575504.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848647|ref|ZP_06789393.1| alanyl-tRNA synthetase [Staphylococcus aureus A9754] gi|304380785|ref|ZP_07363452.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|205830218|sp|A8Z4F6|SYA_STAAT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160368654|gb|ABX29625.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|269941104|emb|CBI49490.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus TW20] gi|294824673|gb|EFG41096.1| alanyl-tRNA synthetase [Staphylococcus aureus A9754] gi|302751447|gb|ADL65624.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340661|gb|EFM06594.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320140495|gb|EFW32349.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144034|gb|EFW35803.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314293|gb|AEB88706.1| Alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus T0131] gi|329728452|gb|EGG64889.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21189] Length = 877 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 8 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 68 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 463 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAI 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 737 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875 >gi|296327899|ref|ZP_06870435.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155033|gb|EFG95814.1| alanine--tRNA ligase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 867 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 342/896 (38%), Positives = 525/896 (58%), Gaps = 66/896 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCSRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ +++ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKINKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWVEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 TNN++ DL +++ + ++TG +Y N N +VI DH R+ +FL+ DG++P+NEGRG Sbjct: 239 TNNFETDLLFPILEEAGKITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGYT+ M ++ + + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYTDLFMYKMVDKVVEKFEVAYPDLRKNLENIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGIQLVNQEIDNLLINGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGITVLR- 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +KYG T+F GY+ +++ K+ Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTEFTGYEK------TEDEGKL 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + D +K ++FD+TPFY E+GGQ+GD G Sbjct: 471 LSLREAKD-------------------------RKYLLIFDKTPFYGESGGQIGDQGKIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H E+GI + L +D R + NH+ATHLLH Sbjct: 506 SDNFEAKVLDVQKQKD-IFIHTVKFEKGIPEENKTYKLEVDVIKRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + + LRFD +H + +T +L IED VN I + + VV + Sbjct: 565 ALREVVGTHVQQAGSLVDSEKLRFDFSHYEALTEEQLSKIEDIVNKKIREGIEVVVSHHS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L I SE Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVHG-----FSTELCGGTHIDNIGKIGLFKITSEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYR--KLQ 771 I AG+RRIEA TG A +L+ ++E LK++ LK + N+V +VE+ E + + + Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEADILKNIEKKLKATNSNLVEKVEKNLETLKDTEKE 737 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828 L K+KL L + + ++ + +I+ K +L++++D ++ + I++L Sbjct: 738 LEALKQKLALFETKAAISGMEEIGGVKVLIAAFKDKSTEDLRTMIDTIKDNNEKAIVVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 S + K + + VT+ L D+ A DL + A++ GG GGGRP AQ+GG + K Sbjct: 798 --STQDKLAFAVGVTKTLTDKIKAGDLVKKLAEIT-GGKGGGRPDFAQAGGKDEGK 850 >gi|254829737|ref|ZP_05234392.1| alanyl-tRNA synthetase [Listeria monocytogenes 10403S] Length = 879 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 364/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ + Sbjct: 348 YFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR+RARA + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +V+E +G + +V+F +TPFY Sbjct: 464 S----------------------TEHVSEIL-YLIQNDTLVDEVAAGNEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDRVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 + + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 LLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 +D + K GI++L + +K + V E + ++A L + A GG GGGR Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ+GG N + A+ V++++K+ Sbjct: 850 PDMAQAGGKNPAELRTALDYVSTWVKE 876 >gi|297748879|gb|ADI51425.1| Alanyl-tRNA synthetase [Chlamydia trachomatis D-EC] gi|297749759|gb|ADI52437.1| Alanyl-tRNA synthetase [Chlamydia trachomatis D-LC] Length = 924 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 333/887 (37%), Positives = 491/887 (55%), Gaps = 55/887 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y TT Sbjct: 53 NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 112 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 113 QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFDPDF 172 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 173 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 230 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 231 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 290 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RGYVL Sbjct: 291 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 350 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F KT Sbjct: 351 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 410 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL ++G+ AFKL DT+GLP+D + +L ID+ +F + Sbjct: 411 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 469 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 E + R+R ++ + + F + ++FIGYD L F Sbjct: 470 EVEAKERSRKNTKKTKNDSDS--VFQDLDPTNTSEFIGYDTLSCDTF------------- 514 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 ++ I++ EI G + ++ TPFYA GGQ+GD+G + Sbjct: 515 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESGTF 564 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL L Sbjct: 565 LVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 624 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D ++ Sbjct: 625 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 684 Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 S G KY D VRVVS + S LCGGTH +TG+I I E ++ GI Sbjct: 685 SSEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 738 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771 RRIEA TG+ A + QD L +A+ ++ + ++ ++ + EE + L Q Sbjct: 739 RRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQ 798 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 L+ + K L SC KI D +++ + ++E + + ++ +A+ K+I + I L Sbjct: 799 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 854 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876 K + VL V++DL R V L A++L GG GG+ AQ Sbjct: 855 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 899 >gi|298694898|gb|ADI98120.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED133] Length = 876 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKETTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874 >gi|57650500|ref|YP_186513.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] gi|87161149|ref|YP_494270.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195427|ref|YP_500231.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221731|ref|YP_001332553.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. Newman] gi|221141112|ref|ZP_03565605.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258450555|ref|ZP_05698617.1| alanyl-tRNA synthetase [Staphylococcus aureus A5948] gi|284024675|ref|ZP_06379073.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus 132] gi|71153554|sp|Q5HFE4|SYA_STAAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|122539371|sp|Q2FXV9|SYA_STAA8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123485547|sp|Q2FGA8|SYA_STAA3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830217|sp|A6QHF9|SYA_STAAE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|57284686|gb|AAW36780.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus COL] gi|87127123|gb|ABD21637.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202985|gb|ABD30795.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374531|dbj|BAF67791.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. Newman] gi|257861713|gb|EEV84512.1| alanyl-tRNA synthetase [Staphylococcus aureus A5948] gi|315198685|gb|EFU29013.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus CGS01] Length = 876 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAI 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874 >gi|291485146|dbj|BAI86221.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. natto BEST195] Length = 878 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 358/912 (39%), Positives = 532/912 (58%), Gaps = 62/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +TV+ EDEEA++ W K G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E +RY+E+WNLVF +F LPK +IDTGMGLERM +V Sbjct: 180 YGNDPEDPELYPGG--ENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294 +Q N+D DLF +I+A+E ++G Y +N+ + +VI DH+R+ +F ++DG LP+N Sbjct: 238 IQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ + P M L+P + M YPE+ + I + +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKVIKTE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +ERF +TL+ GL +L ++ KD+ +++G FKLYDT+G P+++ ++ + Sbjct: 358 EERFHETLNEGLAILSEMIKK-EKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + +QR RAR +GS + +L++ + F+GY K Sbjct: 417 -VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQ------TKA 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 D ++ ++Q G+++EEA G+ V+++ D+TPFYAE+GGQ+GD Sbjct: 468 DANIIV-----------------LLQDGQLIEEAYEGESVQIILDETPFYAESGGQIGDK 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++I DVQK G VH +VE G ++ + + ++ R + NH+ATH Sbjct: 511 GYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I ++PV Sbjct: 571 LLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSI 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L IV Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I AG RRIEA+TGQ A + Q LK A LK + V RV + E ++ Q Sbjct: 686 SESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELKEAQ 745 Query: 772 LIHAKRKLQL-NVED---LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +L NVE LS K D VN ++ ++ D L++++D L+ K+ S +I+ Sbjct: 746 RENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSAVIV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G + K ++ VT+DL+++ +A L + +A+V GGGGGGRP MAQ+GG K Sbjct: 806 L-GAVQNDKVNISAGVTKDLIEKGLHAGKLVKQAAEVC-GGGGGGRPDMAQAGGKQPEKL 863 Query: 886 DQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 EEALASVEDWVK 875 >gi|262051273|ref|ZP_06023497.1| alanyl-tRNA synthetase [Staphylococcus aureus 930918-3] gi|282920165|ref|ZP_06327890.1| alanyl-tRNA synthetase [Staphylococcus aureus A9765] gi|259160910|gb|EEW45930.1| alanyl-tRNA synthetase [Staphylococcus aureus 930918-3] gi|282594513|gb|EFB99498.1| alanyl-tRNA synthetase [Staphylococcus aureus A9765] Length = 876 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAI 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----RVEEINGYKVLVTEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874 >gi|237741671|ref|ZP_04572152.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13] gi|229429319|gb|EEO39531.1| alanyl-tRNA synthetase [Fusobacterium sp. 4_1_13] Length = 867 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 343/896 (38%), Positives = 528/896 (58%), Gaps = 66/896 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ +++ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIKWSWEFVTEVLKINKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 TNN++ DL +++ + ++TG +Y N+ + +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 TNNFETDLLFPILEEAAKITGSQYGKNSETDFSLKVITDHARAVTFLINDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEVAYPDLKKNLGNIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGITVLR- 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +KYG T+F GY+ ED Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTKFTGYE-------KTEDEGK 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + E G+ + ++FD+TPFYAE+GGQ+GD G Sbjct: 470 LLN-----------------------LRETKDGKYL-LIFDKTPFYAESGGQVGDQGKIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H E+GI + L +D R + NH+ATHLLH Sbjct: 506 SDNFVGKVLDVQKQKD-IFIHTVEFEKGIAEENKTYKLVVDVVRRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + P+ LRFD +H + +T+ +L IE+ VN+ I + + V N Sbjct: 565 ALREVVGTHVQQAGSLVDPEKLRFDFSHYEALTAEKLSKIENIVNEKIREGIEVSISYHN 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY D+VRVV V S+ LC GTH+ + G+I L I+SE Sbjct: 625 IEEAKKLGAMMLFGDKYGDKVRVVDVP-----GFSTELCEGTHIDNIGKIGLFKIISEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYRKL--Q 771 I AG+RRIEA TG A +L+ ++E L + LK + N+V +VE+ E ++ + Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEANILNDIEKKLKATNSNLVEKVEKTLETLKETEKE 737 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLV 828 L + K+KL L + ++N + +I+ K +L++++DA++ + + II+L Sbjct: 738 LENLKQKLALFETKSVISGMEEINGVKVLIATFKDKSAEDLRTMIDAIKAENEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 S + K + + VT+ L+D+ A DL + A++ GG GGGR AQ+GG + K Sbjct: 798 --STQDKLAFAVGVTKTLIDKIKAGDLVKKLAEIT-GGKGGGRADFAQAGGKDEEK 850 >gi|89897947|ref|YP_515057.1| alanyl-tRNA synthetase [Chlamydophila felis Fe/C-56] gi|123483857|sp|Q255X6|SYA_CHLFF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|89331319|dbj|BAE80912.1| alanyl tRNA synthetase [Chlamydophila felis Fe/C-56] Length = 875 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 334/880 (37%), Positives = 501/880 (56%), Gaps = 54/880 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H ++PSS + P NDP+++FTN+GM FK+IF +E Y TT Sbjct: 4 NTLRSNFLKFYANRHHAIVPSSPIFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFK++AI AW++ F+ D Sbjct: 64 QKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKKQAIAFAWEVSLSVFNFDPNL 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW++ L +++I R+T DNFWSMAETGPCG CSE+ FD+G Sbjct: 124 IYATVHEKDDEAFALWEQ--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGANFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P +GER++E WNLVFM+F + LP +DTG GLER+ +++ Sbjct: 182 KATSPLEDTDGERFLEYWNLVFMEFNRTADGSLLSLPSKHVDTGAGLERLVSIISGTNTV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ + LI +E+++G KY + + RVI DH RS SF IADG+LP N RGYVL Sbjct: 242 FEADVLRLLISKTEELSGKKYHEDEALGAAFRVIADHTRSLSFAIADGLLPGNTERGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RR++ Y + LG+T+P + ++P+L MG AYPEL + I+E + +E+E + K+ Sbjct: 302 RKILRRSVNYGKRLGFTKPFLAEIVPSLVDSMGEAYPELRLSLSQIQEVMTTEEENYFKS 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL +++G+ AFKL DT+GLPLD + +L +D+ +F Q Sbjct: 362 LHRGGNLLQQVLKSSSTSSLISGEDAFKLKDTYGLPLDEIA-LLAKDYNFSVDLETFYQL 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIW--FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +E + R+R ++ T+ I+ SL E ++FIGY+ L F Sbjct: 421 EKEAKERSRK-NIAKSQNATDAIYDSLSLGEN---SEFIGYNDLSCDTF----------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIG 536 ++AIV +G+ V +K ++ TPFYAE GGQ+GD+G C+ G Sbjct: 466 ------------IEAIVSEGKQVSSLQEKEKGALILKSTPFYAEKGGQIGDSGEIFCSDG 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++ GI +HH V +G L ++ ++ R+++S NH+ HLLH A Sbjct: 514 TFV---VSHTTSPKAGIVIHHGEVSQGQLSQAQAVTTQVNCIRRKRISNNHTGCHLLHKA 570 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LG H+ Q GS + +R D TH K I+ +L SIE VN+ I +N V TR Sbjct: 571 LEMTLGDHIRQAGSYVDDSKIRLDFTHPKAISPEDLASIELLVNEKIRENHQVETRNTLY 630 Query: 657 EDAIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 D + S G KY+D VRVVS + S LCGGTH TG++ I+ E + Sbjct: 631 SDVVNSKEIKQFFGDKYSDVVRVVSAGF------SHELCGGTHAEFTGDLGYFRILKEHA 684 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + GIRRIEA+TG+ A +E L +A L+ + ++ +++ I EE ++ Q+ Sbjct: 685 VATGIRRIEAVTGKEAEILAHQDNEDLNEIALILQSPRDQILHKLQNILEEKKEQAKQIS 744 Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + KL ++ D C ++ DV+F+ H + E +S L+ + L +KI S +I L Sbjct: 745 ELETKLIHSLLDKLIDHCQQVNDVSFLIHHLPESESHRLQQYANCLHQKIPSRLISLWTT 804 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 K K + +++DL+ + A DL ++ GG GG Sbjct: 805 QKNGKYIIFSRISDDLIKQGLQAKDLLKILLAPCGGRWGG 844 >gi|294783331|ref|ZP_06748655.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA] gi|294480209|gb|EFG27986.1| alanine--tRNA ligase [Fusobacterium sp. 1_1_41FAA] Length = 867 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 342/894 (38%), Positives = 519/894 (58%), Gaps = 62/894 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ Y VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFKE AI +W+ +T+ L++ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFVTEVLKLNKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA ++W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAERIWIEKCNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-VQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 NN++ DL +++ + ++TG +Y ++ N +VI DH R+ +FL+ DG++P+NEGRG Sbjct: 239 PNNFETDLLFPILEEAARITGSQYGKSSETNFSLKVITDHARAVTFLVNDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGY + M ++ + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVERFEVAYPDLKKNLENIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+V+FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGIQLVNQEIDNLLANGKNK-LDGEVSFKLYDTYGFPYELTEEIAEERGVTVLR- 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +K+G T+F GY+ ED Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEDFYDKHGVTKFTGYE-------KTEDEAT 469 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L EA G+ + ++FD+TPFYAE+GGQ+GD G Sbjct: 470 LLSS-----------------------REAKDGKYL-LIFDKTPFYAESGGQVGDQGRIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H +E+G + L ++ R + NH+ATHLLH Sbjct: 506 SDNFSAKVLDVQKQKD-IFIHTVEIEKGSAEENKTYKLEVNLLRRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS + D LRFD +H + +T+ +L IE+ VN+ I + + VV + Sbjct: 565 ALREVVGTHVQQAGSLVDSDKLRFDFSHYEAVTAEQLAKIENIVNEKIREGIDVVVSHHS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY + VRVV V S+ LCGGTH+ + +I L IVSE Sbjct: 625 IEEAKNLGAMMLFGDKYGEVVRVVDVPG-----FSTELCGGTHIDNIAKIGLFKIVSEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LI 773 I AG+RRIEA TG A + + LK + LK S NVV +VE+ E + + L Sbjct: 680 IAAGVRRIEAKTGYGAYLVEKEEADTLKEIEKKLKASNTNVVEKVEKTLESLKDTEKSLE 739 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGI 830 K+K+ L + + ++N +I+ K +L++++D ++ + I++L Sbjct: 740 TLKQKIALFETKAALSGMEEINGAKVLIATFKDKTADDLRTMIDTIKDNNEKAIVVLA-- 797 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 S + K S + VT+ L D+ A DL + A+ + GG GGGRP AQ+GG + +K Sbjct: 798 STQDKLSFAVGVTKTLTDKVKAGDLVKQLAE-MTGGKGGGRPDFAQAGGKDESK 850 >gi|205830105|sp|A4IR80|SYA_GEOTN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 878 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 364/911 (39%), Positives = 530/911 (58%), Gaps = 60/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P + Sbjct: 7 AEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDNPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT E D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +TV+ EDEEA+ +W+ GL ++IIR+ FW + E GP GP +EIF+D+GE Sbjct: 123 ERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGKFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E +RY+E+WNLVF QF LPK +IDTGMGLERM ++L Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q+ N++ DLF +I+A+EQ+ G +Y + N V +VI DH+R+ +F + DG LP+NE Sbjct: 239 QDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I +R+E+ Sbjct: 299 GRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARVIRTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TL GL +L V+ K ++ G+ AF+LYDT+G PL++ ++ G++ + Sbjct: 359 ERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEAGMS-V 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F + +E QR RARA + S + + +K++ ++F+GYD L Sbjct: 418 DHAGFEREMERQRERARAARQDVDSMQVQGGVLGDIKDE---SRFVGYDELV-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 VSS V AI++ G+ VEE +G++ +++ D TPFYAE+GGQ+ D G Sbjct: 467 ---------------VSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQIADQG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + DVQK G +H +VERG ++ +D R Q+ NH+ATHL Sbjct: 512 VFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I +++PV Sbjct: 572 LHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIPVDIF 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 E+A A GA AL G KY D VRVV V G +S LCGG HV +T I L IVS Sbjct: 632 YKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG RRIEA+TG+ A + Q L+ A LK S + R++ ++ E R+LQ Sbjct: 687 ESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELRQLQR 746 Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + A R + E L+ ++ V ++ + D +L+++ D L++K+ + +I+L Sbjct: 747 ENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTAVIVL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K ++ VT+DL+ + ++A L + A GGGGGGRP MAQ+GG + NK Sbjct: 807 AAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKDANKVG 864 Query: 887 QAIAGVASFLK 897 +A+ V +++K Sbjct: 865 EALDYVETWVK 875 >gi|15924608|ref|NP_372142.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50] gi|15927198|ref|NP_374731.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315] gi|148268099|ref|YP_001247042.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9] gi|150394167|ref|YP_001316842.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156979936|ref|YP_001442195.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3] gi|253316601|ref|ZP_04839814.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006403|ref|ZP_05145004.2| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793693|ref|ZP_05642672.1| alanyl-tRNA synthetase [Staphylococcus aureus A9781] gi|258411008|ref|ZP_05681288.1| alanyl-tRNA synthetase [Staphylococcus aureus A9763] gi|258420190|ref|ZP_05683145.1| alanyl-tRNA synthetase [Staphylococcus aureus A9719] gi|258438192|ref|ZP_05689476.1| alanyl-tRNA synthetase [Staphylococcus aureus A9299] gi|258443655|ref|ZP_05691994.1| alanyl-tRNA synthetase [Staphylococcus aureus A8115] gi|258448776|ref|ZP_05696888.1| alanyl-tRNA synthetase [Staphylococcus aureus A6224] gi|258453595|ref|ZP_05701573.1| alanyl-tRNA synthetase [Staphylococcus aureus A5937] gi|269203244|ref|YP_003282513.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98] gi|282893121|ref|ZP_06301355.1| alanyl-tRNA synthetase [Staphylococcus aureus A8117] gi|282928252|ref|ZP_06335857.1| alanyl-tRNA synthetase [Staphylococcus aureus A10102] gi|295406740|ref|ZP_06816545.1| alanyl-tRNA synthetase [Staphylococcus aureus A8819] gi|296276721|ref|ZP_06859228.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MR1] gi|297245678|ref|ZP_06929543.1| alanyl-tRNA synthetase [Staphylococcus aureus A8796] gi|54039649|sp|P67011|SYA_STAAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|54042024|sp|P67010|SYA_STAAM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830214|sp|A7X328|SYA_STAA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830215|sp|A6U287|SYA_STAA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830216|sp|A5ITE3|SYA_STAA9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|13701416|dbj|BAB42710.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus N315] gi|14247389|dbj|BAB57780.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu50] gi|147741168|gb|ABQ49466.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH9] gi|149946619|gb|ABR52555.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus JH1] gi|156722071|dbj|BAF78488.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus Mu3] gi|257787665|gb|EEV26005.1| alanyl-tRNA synthetase [Staphylococcus aureus A9781] gi|257840158|gb|EEV64622.1| alanyl-tRNA synthetase [Staphylococcus aureus A9763] gi|257843901|gb|EEV68295.1| alanyl-tRNA synthetase [Staphylococcus aureus A9719] gi|257848236|gb|EEV72227.1| alanyl-tRNA synthetase [Staphylococcus aureus A9299] gi|257851061|gb|EEV75004.1| alanyl-tRNA synthetase [Staphylococcus aureus A8115] gi|257858054|gb|EEV80943.1| alanyl-tRNA synthetase [Staphylococcus aureus A6224] gi|257864326|gb|EEV87076.1| alanyl-tRNA synthetase [Staphylococcus aureus A5937] gi|262075534|gb|ACY11507.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ED98] gi|282590059|gb|EFB95141.1| alanyl-tRNA synthetase [Staphylococcus aureus A10102] gi|282764439|gb|EFC04565.1| alanyl-tRNA synthetase [Staphylococcus aureus A8117] gi|285817300|gb|ADC37787.1| Alanyl-tRNA synthetase [Staphylococcus aureus 04-02981] gi|294968487|gb|EFG44511.1| alanyl-tRNA synthetase [Staphylococcus aureus A8819] gi|297177329|gb|EFH36581.1| alanyl-tRNA synthetase [Staphylococcus aureus A8796] gi|312830005|emb|CBX34847.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129899|gb|EFT85889.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus CGS03] gi|329727520|gb|EGG63976.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus 21172] Length = 876 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 350/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S +KV S VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVVEKLTQ 736 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874 >gi|296437225|gb|ADH19395.1| alanyl-tRNA synthetase [Chlamydia trachomatis G/11222] Length = 874 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 333/886 (37%), Positives = 491/886 (55%), Gaps = 54/886 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y TT Sbjct: 4 NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 64 QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFDPDF 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW+K L D+I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTDRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RGYVLR Sbjct: 242 FEADVLRHLISKIENLSGTTYSTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVLR 301 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 +I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F KTL Sbjct: 302 KILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKTL 361 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 RG LL VL ++G+ AFKL DT+GLP+D + +L ID+ +F + Sbjct: 362 QRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKLE 420 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 E + R+R ++ + + F + ++FIGYD L F Sbjct: 421 VEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF-------------- 464 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 ++ I++ EI G + ++ TPFYA GGQ+GD+G + Sbjct: 465 ---------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESGTFL 515 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL LG Sbjct: 516 VSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTLG 575 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D ++S Sbjct: 576 EHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMSS 635 Query: 663 GA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 G KY D VRVVS + S LCGGTH +TG+I I E ++ GIR Sbjct: 636 SEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGIR 689 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------QL 772 RIEA TG+ A + QD L +A+ ++ + ++ ++ + EE + L QL Sbjct: 690 RIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQL 749 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + + K L SC KI D +++ + ++E + + ++ +A+ K+I + I L K Sbjct: 750 VQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITEK 805 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876 + VL V++DL R V L A++L GG GG+ AQ Sbjct: 806 NGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 849 >gi|163942138|ref|YP_001647022.1| alanyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4] gi|229135211|ref|ZP_04264010.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST196] gi|205829987|sp|A9VI09|SYA_BACWK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|163864335|gb|ABY45394.1| alanyl-tRNA synthetase [Bacillus weihenstephanensis KBAB4] gi|228648253|gb|EEL04289.1| Alanyl-tRNA synthetase [Bacillus cereus BDRD-ST196] Length = 880 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 356/913 (38%), Positives = 539/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGES 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L + ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKDAAVKAVIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVAI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|295109896|emb|CBL23849.1| alanyl-tRNA synthetase [Ruminococcus obeum A2-162] Length = 879 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 365/912 (40%), Positives = 519/912 (56%), Gaps = 58/912 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FL+F + GH ++ S SL+P D +L+ N+GM P K FTG E P VTT Sbjct: 6 VNELRQMFLDFMESKGHLVMKSFSLVPQGDKSLLLINAGMAPLKPYFTGAEIPPRTRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF +W K G+ A++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYQDDDEAFNIWNKEVGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + + +RY+E+WN VF QFE L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D L +++G +YE N + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 241 SIFDVDTICALRNLVCEISGKEYEKNYQDDVSIRLITDHIRSATFMISDGIMPTNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + + YPEL + K I + L +E+ +F Sbjct: 301 VLRRLIRRAARHGRLLGIKGTFLAKLSEEVINGSKAGYPELEEKKEFIFKVLTNEENQFN 360 Query: 360 KTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + ++ L+G+ AFKLYDT+G PLD+ ++IL +G ID Sbjct: 361 KTIDQGLRILGDMEEEMKTAGEKTLSGENAFKLYDTYGFPLDLTKEILEEKGYT-IDEDG 419 Query: 418 FNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F +A+EEQR +AR + +G + ++I ++ T+F GYD L Sbjct: 420 FQKAMEEQRVKARTSREVTNYMGADATVYDEIDVNV-----TTEFEGYDNLI-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + + +IV + GQK V +TPFYA GGQ GD G Sbjct: 467 ---------------YDSEITVLTTEKDIVTSLMEGQKGTVFVKETPFYATMGGQEGDCG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + D K G F H +E G+L T ++ L ++ Q RR NHSATHL Sbjct: 512 VIETANGKFVVEDTIKLRGGKFGHVGYMESGMLSTGETVSLKVNEQARRDTEKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS +TPD LRFD H + +T E+ E VN I LPV T Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFQAMTPDEIVEAEALVNKEIQAALPVETN 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 IM+ E+A SGA AL G KY+ +VRVVS+ G S LCGGTHV +T IML IVS Sbjct: 632 IMDIEEAKKSGAMALFGEKYDQKVRVVSM-----GDFSRELCGGTHVRNTSSIMLFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + AG+RRIEA+TG + Q+ L A LK V ++ + + + LQ Sbjct: 687 EAGVAAGVRRIEALTGNGVIEYYKKQEAMLHEAAKALKAQPAEVAEKIAHLQADVKALQS 746 Query: 773 IHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827 + K +L L ++I DV + + S V D L+ + D L++KI G+++L Sbjct: 747 ENESLKSKLAQGSLGDVMNQIVDVKGVKLLASRVEGIDMNGLRDLGDQLKEKIGEGVVVL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 ++ K ++L + T+ +A +L + A ++ GGGGGGRP+MAQ+GG N KA Sbjct: 807 AAVNG-GKVNLLAMATDAAQKAGAHAGNLIKGVAAIV-GGGGGGRPNMAQAGGKNPEKAQ 864 Query: 887 QAIAGVASFLKK 898 +AI A L++ Sbjct: 865 EAIDAAAGILEQ 876 >gi|159030141|emb|CAO91033.1| alaS [Microcystis aeruginosa PCC 7806] Length = 878 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 347/904 (38%), Positives = 521/904 (57%), Gaps = 54/904 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FF H++LPS+SL+P DPT++ T +GM+PFK IF GQ+ P + TT Sbjct: 12 SEIRQRFLDFFAARNHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKTPEFPRATTS 70 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI AW+L T+ F+L R Sbjct: 71 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFNLPPER 126 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ EDEEAF +W+ G+ A +I ++ DNFW TGPCGPCSEI++D + Sbjct: 127 LVVSVFKEDEEAFAIWRDKIGIPAHRIQKMGEADNFWVSGPTGPCGPCSEIYYDFHPEL- 185 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ NNY Sbjct: 186 GDKTIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLANKNIDTGMGLERMAQILQKVANNY 245 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL ++ + ++ + Y+ + V+ +VI DH+RS +IADGI +N RGYVL Sbjct: 246 ETDLIFPIVAEAARLAAIDYQKADEKTKVSLKVIGDHVRSVVHMIADGISASNTDRGYVL 305 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + S Y + + + +I+ L E+ RF +T Sbjct: 306 RRLIRRVVRHGRLIGIEGQFITKVAEVAIALSESVYGNVRERETVIKAELEREEARFLET 365 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL+ +L + ++G AF LYDT+G PL++ Q+I +GL+ +D F Q Sbjct: 366 LERGEKLLESILEK--EKSQISGVDAFTLYDTYGFPLELTQEIAEEQGLS-VDTAGFEQE 422 Query: 422 L--EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + ++QRS+A ++ L T + L E T+F+GY L+ Sbjct: 423 MKKQQQRSKAAHETIDL---TVQGSLDKLAEHIHPTEFLGYTDLQA-------------- 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ V A++ G+ VE A +G +V+VV DQTPFYAE+GGQ+GD G GD + Sbjct: 466 ---------TATVTAVLVAGKTVESAAAGTEVQVVLDQTPFYAESGGQIGDKGYLTGDNL 516 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++ DVQK++ GIF+H +ERG++ T ++ ID RR+ NH+ATHLL AL Sbjct: 517 LIRVEDVQKES-GIFIHFGRIERGVVTTGDTINAQIDRSCRRRAQANHTATHLLQSALKK 575 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + +SQ GS ++ + LRFD +P+TSAEL+ +E+ +N IA+ +M E+A Sbjct: 576 LVDAGISQAGSLVSFERLRFDFNCPRPLTSAELQQVEEQINTWIAEAHDTQIAVMGLEEA 635 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY VRV+ + S LCGGTHV +T EI L I+SE+ I AG Sbjct: 636 KQKGAIAMFGEKYGSEVRVIDIPR-----VSMELCGGTHVKNTAEIGLFKIISETGIAAG 690 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777 IRRIEA+ G ++L +D+ ++ L KV + R+ + E + + QL K+ Sbjct: 691 IRRIEAVAGPAVLAYLNERDQVVRDLCDRFKVKPLEIPDRITALQSELKGTQKQLEAVKQ 750 Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L LN D I + + + ++D+ L + + LQ+K+ G ++L Sbjct: 751 ELALNKSDALLSQAESIGEFKLLVASLGDIDANALMAAAERLQQKLGEGAVILASTPAAD 810 Query: 835 KASVLIVVTEDLL-DR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K S++ + ++ DR A AK+ GGGGGRP++AQ+GG + +K +A+A Sbjct: 811 KVSLVAAFSPRVIKDRGLQAGKFIGAIAKIC-AGGGGGRPNLAQAGGRDASKLSEALAKA 869 Query: 893 ASFL 896 S L Sbjct: 870 KSQL 873 >gi|254828262|ref|ZP_05232949.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N3-165] gi|258600650|gb|EEW13975.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL N3-165] Length = 879 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 364/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR+RARA + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +V+E +G + +V+F +TPFY Sbjct: 464 S----------------------TEHVSEIL-YLIQNDTLVDEVAAGNEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 + + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 LLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 +D + K GI++L + +K + V E + ++A L + A GG GGGR Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ+GG N + A+ V++++K+ Sbjct: 850 PDMAQAGGKNTAELGTALDYVSTWVKE 876 >gi|138896126|ref|YP_001126579.1| alanyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2] gi|134267639|gb|ABO67834.1| Alanyl-tRNA synthetase [Geobacillus thermodenitrificans NG80-2] Length = 892 Score = 585 bits (1509), Expect = e-165, Method: Compositional matrix adjust. Identities = 364/911 (39%), Positives = 530/911 (58%), Gaps = 60/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P + Sbjct: 21 AEVRRMFLQFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIIPDNPRICNA 80 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT E D Sbjct: 81 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFDP 136 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +TV+ EDEEA+ +W+ GL ++IIR+ FW + E GP GP +EIF+D+GE Sbjct: 137 ERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGKFWDIGE-GPSGPNTEIFYDRGEA 193 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E +RY+E+WNLVF QF LPK +IDTGMGLERM ++L Sbjct: 194 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 252 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q+ N++ DLF +I+A+EQ+ G +Y + N V +VI DH+R+ +F + DG LP+NE Sbjct: 253 QDVPTNFETDLFMPIIRATEQIAGEQYGKDPNKDVAFKVIADHIRAVTFAVGDGALPSNE 312 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I +R+E+ Sbjct: 313 GRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGEIMQDYYPEVKEKADFIARVIRTEE 372 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TL GL +L V+ K ++ G+ AF+LYDT+G PL++ ++ G++ + Sbjct: 373 ERFHETLHEGLAILAEVMEKAKKQGSTVIPGEEAFRLYDTYGFPLELTEEYAAEAGMS-V 431 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F + +E QR RARA + S + + +K++ ++F+GYD L Sbjct: 432 DHAGFEREMERQRERARAARQDVDSMQVQGGVLGDIKDE---SRFVGYDELV-------- 480 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 VSS V AI++ G+ VEE +G++ +++ D TPFYAE+GGQ+ D G Sbjct: 481 ---------------VSSTVIAIIKDGQPVEEVGTGEEAQIIVDVTPFYAESGGQIADQG 525 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G+ + DVQK G +H +VERG ++ +D R Q+ NH+ATHL Sbjct: 526 VFEGETGTAVVKDVQKAPNGQHLHSIVVERGAVKKGDRYTARVDEVKRSQIVKNHTATHL 585 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I +++PV Sbjct: 586 LHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPDELERIEAIVNEQIWKSIPVDIF 645 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 E+A A GA AL G KY D VRVV V G +S LCGG HV +T I L IVS Sbjct: 646 YKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTAAIGLFKIVS 700 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG RRIEA+TG+ A + Q L+ A LK S + R++ ++ E R+LQ Sbjct: 701 ESGIGAGTRRIEAVTGEAAYRFMSEQLALLQEAAQKLKTSPRELNARLDGLFAELRQLQR 760 Query: 773 IH---AKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + A R + E L+ ++ V ++ + D +L+++ D L++K+ + +I+L Sbjct: 761 ENESLAARLAHMEAEHLTRQVKEVGGVPVLAAKVQANDMNQLRAMADDLKQKLGTAVIVL 820 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K ++ VT+DL+ + ++A L + A GGGGGGRP MAQ+GG + NK Sbjct: 821 AAV-QGGKVQLIAAVTDDLVKKGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKDANKVG 878 Query: 887 QAIAGVASFLK 897 +A+ V +++K Sbjct: 879 EALDYVETWVK 889 >gi|224418366|ref|ZP_03656372.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|253827685|ref|ZP_04870570.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|313141896|ref|ZP_07804089.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|253511091|gb|EES89750.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] gi|313130927|gb|EFR48544.1| alanyl-tRNA synthetase [Helicobacter canadensis MIT 98-5491] Length = 853 Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust. Identities = 346/897 (38%), Positives = 518/897 (57%), Gaps = 60/897 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 +R FLEFFQ GH++ S L+P +DPTL+FTN+GMV FK+IFTG+ P T+ Q Sbjct: 5 VRALFLEFFQSKGHKIYESMPLVP-DDPTLLFTNAGMVQFKDIFTGKVPTPSPNIATSAQ 63 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFK+ AI AW+ +T+ + L Sbjct: 64 LCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEVLGFSKEVL 123 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 Y+T+++ D+EAF+LWK+ + +++I R+ DNFW M +TGPCGPCSEIF DQG E Sbjct: 124 YVTIHESDDEAFELWKE--HIDSNRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQGAEKFN 181 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ +L+ K++N+ Sbjct: 182 GPEDYFGGDGDRFLEIWNLVFMQYERDIEGNLKPLPKPSIDTGMGLERVMALLEGKSSNF 241 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF LI E++ G KY + + RVI DH R+ +FL+A G+ EGRGYVLRRI Sbjct: 242 DSSLFMPLIAKVEEIVGQKYFYESGASFRVIADHARAVAFLLAQGVNFDKEGRGYVLRRI 301 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG +P + +L ++C MGS Y L + K +I+ ++E+ERF +TL+ Sbjct: 302 LRRAVRHGYLLGMRKPFVYEVLESVCENMGSHYHYLKEKKEIIKTQCKAEEERFFETLEN 361 Query: 365 GLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 G+ L + L L K++ + +G++AFKLYDT+G PLD+ QD+L G G+DI SF Sbjct: 362 GMNLFNKELEVLKKEKSKALFSGEIAFKLYDTYGFPLDLTQDMLRENGF-GVDIDSFEVC 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +++Q+ +A+A+ G G E + +L K+G FIGY+ + K+L Sbjct: 421 MQKQKEQAKANWKGSGDSIQEGDFKTLLSKFGENVFIGYEC------AESKSKILA---- 470 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IR 540 L + VK + +G V+FD+TP Y ++GG +GD G + I Sbjct: 471 --LLDENFKEVKTLQGKG------------YVMFDKTPLYPQSGGPIGDKGRILQQNEIV 516 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY-QNRRQLSINHSATHLLHHALST 599 ITD +K F + + E+ + I+ ++R +++ +HSATHLLH AL Sbjct: 517 ATITDTKK----YFGLNISTLETLKPLEIGQEVWIEVSKDRLEIAKHHSATHLLHKALRE 572 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + + LRFD +H K ++ EL +E VN+ I + P + +M E A Sbjct: 573 VLGDHITQAGSLVESNRLRFDFSHPKALSYEELNKVELLVNEKILKANPQICEVMGIEAA 632 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + GA AL G KY + VRV+S S LCGG HV +T I YIV ES + +G Sbjct: 633 KSKGAMALFGEKYGENVRVISFG------DSIELCGGIHVENTANIGSFYIVKESGVSSG 686 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+ G+ A + ++ S LK N++ +++ E+ + L+ K Sbjct: 687 VRRIEAVCGKAAYYYGKEALSEIASAKEMLKTQ--NLLEGIKKQKEQIKALKSQGGNSKN 744 Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 ++N KI ++N +S +I ++K ++D ++ K + +I+L+ S A V Sbjct: 745 EIN-----NLKIQEINGISMVIQGFSGSDIKEIIDEIKNKYEKVVILLIDESGRIAAGVK 799 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + A + AKV+ GG GGGR A +GG +K ++A+ F+ Sbjct: 800 NAPIK-------AGIWVKEVAKVM-GGNGGGRDDFATAGGKALDKIEEALKKAKEFV 848 >gi|224500670|ref|ZP_03669019.1| alanyl-tRNA synthetase [Listeria monocytogenes Finland 1988] Length = 879 Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust. Identities = 364/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR+RARA + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +V+E +G + +V+F +TPFY Sbjct: 464 S----------------------TEHVSEIL-YLIQNDTLVDEVAAGNEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 + + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 LLQADLREV-----KRENESLLSKLASAASADIFESPKEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 +D + K GI++L + +K + V E + ++A L + A GG GGGR Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ+GG N + A+ V++++K+ Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876 >gi|255026679|ref|ZP_05298665.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-003] Length = 879 Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust. Identities = 364/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PXMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIIFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR+RARA + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +V+E +G + +V+F +TPFY Sbjct: 464 S----------------------TEHVSEIL-YLIQNDTLVDEVAAGNEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 + + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 LLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 +D + K GI++L + +K + V E + ++A L + A GG GGGR Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ+GG N + A+ V++++K+ Sbjct: 850 PDMAQAGGKNPAELRTALDYVSTWVKE 876 >gi|16803544|ref|NP_465029.1| alanyl-tRNA synthetase [Listeria monocytogenes EGD-e] gi|47097201|ref|ZP_00234765.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854] gi|224501556|ref|ZP_03669863.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL R2-561] gi|254898330|ref|ZP_05258254.1| alanyl-tRNA synthetase [Listeria monocytogenes J0161] gi|254912178|ref|ZP_05262190.1| alanyl-tRNA synthetase [Listeria monocytogenes J2818] gi|254936506|ref|ZP_05268203.1| alanyl-tRNA synthetase [Listeria monocytogenes F6900] gi|20532249|sp|Q8Y722|SYA_LISMO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|16410933|emb|CAC99582.1| alanyl-tRNA synthetase [Listeria monocytogenes EGD-e] gi|47014415|gb|EAL05384.1| alanyl-tRNA synthetase [Listeria monocytogenes str. 1/2a F6854] gi|258609100|gb|EEW21708.1| alanyl-tRNA synthetase [Listeria monocytogenes F6900] gi|293590151|gb|EFF98485.1| alanyl-tRNA synthetase [Listeria monocytogenes J2818] Length = 879 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 364/927 (39%), Positives = 524/927 (56%), Gaps = 80/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++++ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR+RARA + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +V+E +G + +V+F +TPFY Sbjct: 464 S----------------------TEHVSEIL-YLIQNDTLVDEVAAGNEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 + + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 LLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 +D + K GI++L + +K + V E + ++A L + A GG GGGR Sbjct: 791 FVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRC-GGNGGGR 849 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P MAQ+GG N + A+ V++++K+ Sbjct: 850 PDMAQAGGKNPAELGTALDYVSTWVKE 876 >gi|21673007|ref|NP_661072.1| alanyl-tRNA synthetase [Chlorobium tepidum TLS] gi|41018235|sp|Q8KG04|SYA_CHLTE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21646071|gb|AAM71414.1| alanyl-tRNA synthetase [Chlorobium tepidum TLS] Length = 885 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 336/869 (38%), Positives = 485/869 (55%), Gaps = 69/869 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N IR +FL+FF H ++ S+ +IP DPTL+FTN+GM FK++F G+ Y Sbjct: 2 NSREIRQSFLDFFAGKEHRIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLGKGTREYTRAA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+L+T+ + L + Sbjct: 62 DTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIGWAWELMTEVWKLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY TVY +DEE+FKLW+ + + I++ DNFW M ETGPCGPCSEI D Sbjct: 122 ERLYATVYHDDEESFKLWQSETDIEHSHILKFGDKDNFWEMGETGPCGPCSEIHIDLTPD 181 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GG P + R IE+WNLVF+Q+++Q LP+ +DTGMG ER+A VLQ K++ Sbjct: 182 GSGG-PLVNVGDHRVIELWNLVFIQYDRQADGTLVPLPQKHVDTGMGFERVAAVLQGKSS 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NYD D+F L ++TG Y + + + RVI DH R+ +F ++DG +P NEGRG Sbjct: 241 NYDSDVFAPLFDRITELTGTVYTASLDSPSDIAMRVIADHCRTLTFALSDGAMPGNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ YA LG EP++ ++ L MG +PEL + + +E+ +R+E+E F Sbjct: 301 YVLRRILRRAVRYAGTLGCHEPIIYKMVEVLVRTMGDVFPELEKQQATVEKIIRAEEESF 360 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 TL RG + + V++ + ++G AFKLYDT G PLD+ + + GL GID Sbjct: 361 LVTLGRGTEIFNEVVADMKTAGSTTISGADAFKLYDTFGFPLDLTRLMAAEVGL-GIDEA 419 Query: 417 SFNQALEEQRSRARAHSLG---LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + EQ++RAR G + E WF+ + T F+GYD+L Sbjct: 420 GFEHCMMEQKTRARMDRKGKMQMQDDGGEWQWFAPE---APTTFVGYDMLE--------- 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + +V VSG K+ +V DQTPFYAE+GGQ+GD G Sbjct: 468 -----------------------TEATLVAARVSGDKLLMVLDQTPFYAESGGQVGDHGT 504 Query: 534 AIGDGIRLQITDVQKKAEGIF-----VHHAIVERGILRTE------MSLVLTIDYQNRRQ 582 G RL +TD +K E I H + + + + +S+ +D R Sbjct: 505 LETAGYRLDVTDTRKDGEQIVHVVTSAHDKVRDCAVTPADVSFDGVVSVKAAVDRDRRVA 564 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NH+ATHLLH AL +LG HV Q GS +TP+ LRFD +H +++ EL+ +E VN Sbjct: 565 TERNHTATHLLHAALRKVLGEHVQQKGSLVTPERLRFDFSHFSKVSAEELEQVEHEVNAE 624 Query: 643 IAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + V + E+A+A GA A G KY DRVRVV V G+ S LCGGTHV + Sbjct: 625 IRKAASVTKHADVPYEEALALGALAFFGDKYADRVRVVEVP----GI-SIELCGGTHVGN 679 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RV 760 G+I ++ IVSESS+ AGIRRIEA+TG A + L + L+ + + LK+ G ++ Sbjct: 680 IGQIGMVKIVSESSVAAGIRRIEAVTGAAAEALLWQEYRDLQEIKNLLKLKADEEAGPKI 739 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDA 815 +E+ EE + L + +L ++ L+ ++ M+ + V EL+ A Sbjct: 740 KELLEEKKALDKQLQESRLAGLLDRLAASLAGGEEVNGCRIMTERLDGVSGDELRQAAVA 799 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTE 844 L++++ + +L G++ K + V E Sbjct: 800 LRERVPCAVGLLCGVADGKVSLVAFASDE 828 >gi|253732273|ref|ZP_04866438.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724062|gb|EES92791.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 877 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 350/924 (37%), Positives = 523/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 8 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 68 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 124 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 180 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 181 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 234 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 235 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 295 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 355 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 413 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK + F+GYD Sbjct: 414 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSVSTFVGYD-- 463 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 464 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 503 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 562 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 563 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 622 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 623 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 677 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 678 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 737 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 738 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 793 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 794 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 851 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 852 MAQGGGTQPENISKSLSFIKDYIK 875 >gi|22299646|ref|NP_682893.1| alanyl-tRNA synthetase [Thermosynechococcus elongatus BP-1] gi|22295830|dbj|BAC09655.1| alanyl-tRNA synthetase [Thermosynechococcus elongatus BP-1] Length = 891 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 361/911 (39%), Positives = 520/911 (57%), Gaps = 60/911 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+F+ GH +LPS+SLIP +DPT++ T +GM+PFK IF GQE P TT QK Sbjct: 18 IRQKFLDFYAAKGHTILPSASLIP-DDPTVLLTIAGMLPFKPIFLGQEAPKVPRATTAQK 76 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK AI AW+L+T + L RL Sbjct: 77 CLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKGEAIAWAWELMTTVYGLPPERLL 132 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP-G 185 ++V++ D+EA+ +W + GL ++I R+ NFW+ TGPCGPCSEI++D P Sbjct: 133 VSVFENDDEAYDIWHRQVGLPKERIQRMGEESNFWTAGPTGPCGPCSEIYYD---FYPEK 189 Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 GL ++ R+IE++NLVFM+ Q ++ R L +IDTGMGLERMA VLQ NNY Sbjct: 190 GLANVDLDDDGRFIELYNLVFMELNQDDQGHRTPLKAKNIDTGMGLERMAQVLQGVPNNY 249 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+A+ Q G++Y+ N +VI DH R+ LIADG+ +N GRGYVL Sbjct: 250 ETDLIFPIIEAAAQRAGIQYQKANASTQTSLKVIGDHTRAVVHLIADGVTASNVGRGYVL 309 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + ++RLLG + L + YP + + + +I L+ E+E+F KT Sbjct: 310 RRLIRRIVRHSRLLGINGLVTPDLAQVAIDLAANVYPNVRERQAVILSELQREEEQFLKT 369 Query: 362 LDRGLVLLDGVLSHLGKDE-------ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 LDRG LL +LS L K + L G AF L+DT+G PL++ Q+I +G+ G+D Sbjct: 370 LDRGEKLLAEMLSPLKKAKGKKRSQPQLAGRDAFVLFDTYGFPLELTQEIAAEQGI-GVD 428 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F + EQR R++A + E I SL ++ TQF GY+ L Sbjct: 429 VAEFEACMAEQRQRSQAAHETIDVTVQEGI-DSLGDQLHPTQFRGYEEL----------- 476 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +++ V AI+ G A +G +V+V+ + TPFYAE+GGQ+GD G Sbjct: 477 ------------SLTTTVTAILVAGHPATTATAGTEVQVILEATPFYAESGGQIGDRGYL 524 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + I DVQK+ E +FVH+ VERG L+ + ID RR++ +H+ATHLL Sbjct: 525 ASSDALVHIHDVQKQKE-LFVHYGKVERGSLKVGDRVSAQIDLSCRRRVQAHHTATHLLQ 583 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++ ++SQ GS + D LRFD +P+T EL+ IED +N I+++ T IM Sbjct: 584 AALKKLIDENISQAGSLVAFDRLRFDFNCPRPLTREELQQIEDQINAWISESHTTHTYIM 643 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 +A A GA A+ G KY ++VRV+ + GV S LCGGTHV +T EI L I+SES Sbjct: 644 ALSEAKAKGAIAMFGEKYGEQVRVLDIP----GV-SMELCGGTHVHNTAEIGLFKIISES 698 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772 + AGIRRIEAI G R +L +D ++ L K ++ R+ ++ + + Q L Sbjct: 699 GVAAGIRRIEAIAGAAVRDYLQQRDSIVRELCDRFKAKPEEILDRISQLQADLKAQQKAL 758 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHI----ISEVDSKELKSVMDALQKKIQSGIIMLV 828 H K +L L + V SH+ ++ VD + LK+ + L K+ SG ++L Sbjct: 759 EHLKAELALAKTQALLEQAKPVG-NSHVLIASLAGVDPQGLKTAAEWLLNKLGSGAVVLA 817 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 K ++L+ ++D++ R +A L A+V GG GGGRP+ AQ+GG K + Sbjct: 818 TQPAADKVNLLVAASQDVVQRGVHAGQLVAALAQVC-GGRGGGRPNFAQAGGSQPAKLAE 876 Query: 888 AIAGVASFLKK 898 A+ S LK+ Sbjct: 877 ALELAHSRLKE 887 >gi|223044141|ref|ZP_03614180.1| alanyl-tRNA synthetase [Staphylococcus capitis SK14] gi|222442535|gb|EEE48641.1| alanyl-tRNA synthetase [Staphylococcus capitis SK14] Length = 876 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 349/917 (38%), Positives = 515/917 (56%), Gaps = 73/917 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT E ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T++ ED A+K+W + GL +IIRI NFW + E GP GP +EIF+D+G Sbjct: 123 EKLYVTIHPEDTGAYKIWNEDIGLDETRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGDE 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQNDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289 MA++ Q NY+ DLF +I E V+G KY E ++ +VI DH+R+ +F IADG Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENVSGKKYLEVEEQDVA-FKVIADHIRTIAFAIADG 292 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 293 ALPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKR 352 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ KD + G+ AFKLYDT+G P+++ +++ Sbjct: 353 VIKSEEERFHETLEEGLSILNQLIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQE 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL+ +D+ +F +++QR RAR A ++ LK + F+GY+ Sbjct: 413 GLS-VDMTTFENEMQQQRDRARQARQSSQSMQIQSEV---LKNITDDSTFVGYE------ 462 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T SI+ ++ GE VE +G+ V TPFYA +GGQ Sbjct: 463 -----------------TTDYQSIITHLIYNGEEVESVEAGETVYFTLKATPFYAVSGGQ 505 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G D + +++V K G +H IV+ G + +++ ++RR + NH Sbjct: 506 VADEGTIGNDKFEIAVSEVTKAPNGQNLHKGIVQYGQATVGAEVDASVNKEDRRAIQKNH 565 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLLH AL +LG HV+Q GS + D LRFD +H P+T EL +E VN+ I + + Sbjct: 566 SATHLLHAALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMTQEELDQVERRVNEEIWRGI 625 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V + M ++A + GA AL G KY D VRVV++ S LCGG HVS+T EI L Sbjct: 626 DVRIQEMGIDEAKSMGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVSNTAEIGL 680 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766 IVSES AG+RRIEA+TG+ A +L K ++ + +KV S VVG+V ++ EE Sbjct: 681 FKIVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNHVKVKSDEQVVGKVTQLQEE 740 Query: 767 YRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + L +R ++ NVED I D+ ++ + ++K ++S MD + K+ Sbjct: 741 EKSLLKQLEQRNKEITSLKMGNVED-QVEVINDLKVLATEVEVPNAKAIRSTMDDFKSKL 799 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 Q II+L + + K S++ V + L D+ A D+ + A ++ GG GGGRP MAQ GG Sbjct: 800 QDTIIVLAS-NVDGKVSIIATVPKSLTDQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGT 857 Query: 881 NGNKADQAIAGVASFLK 897 +A+ + ++K Sbjct: 858 QPENITEALHFIKDYIK 874 >gi|34222740|sp|Q8DH56|SYA_THEEB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 882 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 361/911 (39%), Positives = 520/911 (57%), Gaps = 60/911 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+F+ GH +LPS+SLIP +DPT++ T +GM+PFK IF GQE P TT QK Sbjct: 9 IRQKFLDFYAAKGHTILPSASLIP-DDPTVLLTIAGMLPFKPIFLGQEAPKVPRATTAQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK AI AW+L+T + L RL Sbjct: 68 CLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKGEAIAWAWELMTTVYGLPPERLL 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP-G 185 ++V++ D+EA+ +W + GL ++I R+ NFW+ TGPCGPCSEI++D P Sbjct: 124 VSVFENDDEAYDIWHRQVGLPKERIQRMGEESNFWTAGPTGPCGPCSEIYYD---FYPEK 180 Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 GL ++ R+IE++NLVFM+ Q ++ R L +IDTGMGLERMA VLQ NNY Sbjct: 181 GLANVDLDDDGRFIELYNLVFMELNQDDQGHRTPLKAKNIDTGMGLERMAQVLQGVPNNY 240 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+A+ Q G++Y+ N +VI DH R+ LIADG+ +N GRGYVL Sbjct: 241 ETDLIFPIIEAAAQRAGIQYQKANASTQTSLKVIGDHTRAVVHLIADGVTASNVGRGYVL 300 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + ++RLLG + L + YP + + + +I L+ E+E+F KT Sbjct: 301 RRLIRRIVRHSRLLGINGLVTPDLAQVAIDLAANVYPNVRERQAVILSELQREEEQFLKT 360 Query: 362 LDRGLVLLDGVLSHLGKDE-------ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 LDRG LL +LS L K + L G AF L+DT+G PL++ Q+I +G+ G+D Sbjct: 361 LDRGEKLLAEMLSPLKKAKGKKRSQPQLAGRDAFVLFDTYGFPLELTQEIAAEQGI-GVD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + F + EQR R++A + E I SL ++ TQF GY+ L Sbjct: 420 VAEFEACMAEQRQRSQAAHETIDVTVQEGI-DSLGDQLHPTQFRGYEEL----------- 467 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +++ V AI+ G A +G +V+V+ + TPFYAE+GGQ+GD G Sbjct: 468 ------------SLTTTVTAILVAGHPATTATAGTEVQVILEATPFYAESGGQIGDRGYL 515 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + I DVQK+ E +FVH+ VERG L+ + ID RR++ +H+ATHLL Sbjct: 516 ASSDALVHIHDVQKQKE-LFVHYGKVERGSLKVGDRVSAQIDLSCRRRVQAHHTATHLLQ 574 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++ ++SQ GS + D LRFD +P+T EL+ IED +N I+++ T IM Sbjct: 575 AALKKLIDENISQAGSLVAFDRLRFDFNCPRPLTREELQQIEDQINAWISESHTTHTYIM 634 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 +A A GA A+ G KY ++VRV+ + GV S LCGGTHV +T EI L I+SES Sbjct: 635 ALSEAKAKGAIAMFGEKYGEQVRVLDIP----GV-SMELCGGTHVHNTAEIGLFKIISES 689 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--L 772 + AGIRRIEAI G R +L +D ++ L K ++ R+ ++ + + Q L Sbjct: 690 GVAAGIRRIEAIAGAAVRDYLQQRDSIVRELCDRFKAKPEEILDRISQLQADLKAQQKAL 749 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHI----ISEVDSKELKSVMDALQKKIQSGIIMLV 828 H K +L L + V SH+ ++ VD + LK+ + L K+ SG ++L Sbjct: 750 EHLKAELALAKTQALLEQAKPVG-NSHVLIASLAGVDPQGLKTAAEWLLNKLGSGAVVLA 808 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 K ++L+ ++D++ R +A L A+V GG GGGRP+ AQ+GG K + Sbjct: 809 TQPAADKVNLLVAASQDVVQRGVHAGQLVAALAQVC-GGRGGGRPNFAQAGGSQPAKLAE 867 Query: 888 AIAGVASFLKK 898 A+ S LK+ Sbjct: 868 ALELAHSRLKE 878 >gi|21283297|ref|NP_646385.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2] gi|49486451|ref|YP_043672.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MSSA476] gi|297207662|ref|ZP_06924097.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911744|ref|ZP_07129187.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70] gi|33301697|sp|Q8NW87|SYA_STAAW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56749384|sp|Q6G8V1|SYA_STAAS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21204737|dbj|BAB95433.1| alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MW2] gi|49244894|emb|CAG43355.1| putative alanyl-tRNA synthetase [Staphylococcus aureus subsp. aureus MSSA476] gi|296887679|gb|EFH26577.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885990|gb|EFK81192.1| alanine--tRNA ligase [Staphylococcus aureus subsp. aureus TCH70] Length = 876 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 350/924 (37%), Positives = 524/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H +V+ G + ++ ++ +RR + Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGVVQFGQVNVGATVSAEVNQNDRRDI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S LKV S VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQLKVKSDDQVVDKLTQ 736 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+E+ ++ ++N +++EVD +K ++S M Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIEN----QVEEINGYKVLVTEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874 >gi|297588300|ref|ZP_06946943.1| alanine--tRNA ligase [Finegoldia magna ATCC 53516] gi|297573673|gb|EFH92394.1| alanine--tRNA ligase [Finegoldia magna ATCC 53516] Length = 873 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 340/902 (37%), Positives = 513/902 (56%), Gaps = 63/902 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL +F + GH ++ S LIP +D +L+ N+GM P K FTG++K T+ Sbjct: 6 LNEIRKKFLNYFGERGHLVIKSFPLIPQDDKSLLLINAGMAPLKKYFTGEKKLKKDRATS 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R D+D VG+T RH TFFEMLGNFSFG YFK+ AI AWD LT E ++ + Sbjct: 66 SQRCIRTA----DIDEVGKTQRHGTFFEMLGNFSFGDYFKKEAITWAWDFLTNELEVPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-EC 182 L+ITVY+EDEEA+ +W G+S ++++++ DNFW + + GPCGPCSEI D+G E Sbjct: 122 ILWITVYEEDEEAYNIWVNEVGVSPERVVKLGKGDNFWEL-DQGPCGPCSEIHVDRGFEF 180 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQ--QNKQERFILPKMSIDTGMGLERMATVLQEK 240 P +EGER++E+WNLVF QF + K ER P +IDTGMGLER+ VL+ Sbjct: 181 DPREDAKPGDEGERFLEVWNLVFTQFNKTADGKYERIAHP--NIDTGMGLERITMVLENA 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++I L K +I+ E+++G+KY+ N N V+ R+I DH+R+ +FLI DG++P+NE RG Sbjct: 239 DNIFEIGLVKDIIKTIEEISGVKYKENHQNDVSIRIIADHVRAMTFLIYDGVIPSNEQRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + +LLG + + ++ + S YPEL + + I + +E+++F Sbjct: 299 YVLRRLIRRACRHGKLLGINDSFIEKVIDSCIKVYESGYPELKEERDRIVKIANAEEKKF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TLD GL +LD +L D + +G+ AFKLYDT+G P+D+ ++ L +D F Sbjct: 359 QETLDLGLSILDSMLKETDSD-VFSGENAFKLYDTYGFPIDLTKE-LVGEVNKTVDEDEF 416 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA----TQFIGYDLLRGSKFMKEDRK 474 + +EEQ+ RAR GS + +S +KYG T+F GYD L+ Sbjct: 417 KKLMEEQKERAR------GSRNESNMGWSSDKKYGEGLPETKFDGYDSLKDES------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + I GE +GQ ++ D T FY E GGQ+GD G Sbjct: 464 ------------------EVIEIYGEDENNLNAGQMGIILLDCTTFYGEGGGQVGDKGII 505 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D + ++ D +K + +F+H+ V G L + + +D NRR + NHSATHLLH Sbjct: 506 YNDNFKAEVYDTKKTGKKVFLHYVKVIEGSLNVGDKVTIEVDELNRRDIMKNHSATHLLH 565 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G HV+Q GS + + LRFD+TH + +T +L+ +E VN+ IA +PV M Sbjct: 566 QALKDVVGDHVNQAGSYVDGERLRFDITHFEAVTKEQLEKVEQIVNEKIALGIPVKIDEM 625 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E + + GA L KY D VRVV + G +S LCGGTHV +T +I +L I+SES Sbjct: 626 SLEQSQSIGARGLFEDKYQDVVRVVQM-----GDYSKELCGGTHVKTTSDIQMLKILSES 680 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEAITG+ +L +D + ++ LK S + + R E+ E K Sbjct: 681 SVAAGVRRIEAITGRAVYKYLNERDSLIDTVKHSLKASNEDEITRRIEMNTEEIKELKKK 740 Query: 775 ----AKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + L N++ + I +S +D+ + + ++ K++ G+++L Sbjct: 741 LKDITNKDLSSNIDSVIEDAVDIDGTKVCVFALSGLDNNSFRDFGENIKSKLEDGVVILA 800 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 S E K S + +VT+ + + A D+ R AKV GG GGGR AQ+G + +K D+ Sbjct: 801 N-SDESKVSFITLVTDSAVKKGVFAGDIVREVAKVC-GGNGGGRKDFAQAGAKDSSKVDE 858 Query: 888 AI 889 A+ Sbjct: 859 AL 860 >gi|224476716|ref|YP_002634322.1| alanyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421323|emb|CAL28137.1| putative alanyl-tRNA synthetase [Staphylococcus carnosus subsp. carnosus TM300] Length = 876 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 349/919 (37%), Positives = 517/919 (56%), Gaps = 77/919 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR F+++F++ GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQNFIDYFKEQGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGREIPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT + ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKREAIEFAWEFLTSDRWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T++ ED EA+ LW + GL +IIRI N FW + E GP GP +EIF+D+G Sbjct: 123 EKLYVTIHPEDTEAYDLWHDVIGLEESRIIRIEGN--FWDIGE-GPSGPNTEIFYDRGPE 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGKDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290 MA++ Q NY+ DLF +I+ E+++G KY+ + V +VI DH+R+ +F I DG Sbjct: 234 MASIAQNVRTNYETDLFMPIIEDVEKISGKKYQEDADQDVAFKVIADHIRTIAFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ A+ M YPE+ Q I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLDINEPFMYQLVDAVADIMEPYYPEVKQKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ ++ ++NG AFKLYDT+G P+++ ++I G Sbjct: 354 IKSEEERFHETLEEGLAILNDMIKDAKAGGNVINGKDAFKLYDTYGFPIELTEEIADNEG 413 Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L +D+ +F +++QR RAR + S+ + S LK + F GYD+ Sbjct: 414 LT-VDMKTFEAEMQKQRDRARQARQKSESMQIQSEV-------LKNITTQSTFTGYDV-- 463 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 M ++ K+ I+ GE VE+A +G V V + TPFYA + Sbjct: 464 ----MDQNTKITD-----------------IIVNGERVEKADAGDTVFFVLEATPFYAVS 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G + +++T+V G +H V+ G + + ++++ +RR + Sbjct: 503 GGQVADQGTVSNENFEIEVTEVTNAPNGQNLHKGAVQFGQVAEGAEVEASVNHADRRDIK 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV+Q GS + D LRFD +H P+T EL+ +E VN+ I Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEGDRLRFDFSHFGPVTEEELEQVERRVNEEIW 622 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V + M E+A ASGA AL G KY D VRVV D S LCGG HV +T E Sbjct: 623 KGIDVTIKEMPIEEAKASGAMALFGEKYGDVVRVV-----DMSPFSIELCGGIHVQNTSE 677 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEI 763 I L IVSES AG+RRIEA+TG+ A +L K K++ +K Q V +V ++ Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKAAFLYLEEIQNKFKAVKHQVKAKQDEQVAEKVSQL 737 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVD---SKELKSVMDALQK 818 + ++L +R ++ + +I ++N + + +VD +K L+ MD + Sbjct: 738 IDNEKQLHKQLEQRNQEITALKMGSIDDQIEEINGLKVLALQVDAENAKALRQTMDDFKS 797 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K+Q +I+L +K A V V + D+ A DL + A V+ GG GGGRP MAQ G Sbjct: 798 KLQDSVIILASDVGDKVALVATVPKSE-TDKVKAGDLIKNMAPVV-GGKGGGRPDMAQGG 855 Query: 879 GPNGNKADQAIAGVASFLK 897 G +K +A+ + +++K Sbjct: 856 GSEPSKITEALQFIKNYIK 874 >gi|86151665|ref|ZP_01069879.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94] gi|315124034|ref|YP_004066038.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841294|gb|EAQ58542.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 260.94] gi|315017756|gb|ADT65849.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 842 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 355/892 (39%), Positives = 517/892 (57%), Gaps = 72/892 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 Y+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQGE Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175 Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 SSE+ G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K Sbjct: 176 EHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGK 235 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +N+D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYV Sbjct: 236 FSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYV 295 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF Sbjct: 296 LRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLS 355 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 T++ G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F Sbjct: 356 TIENGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFEL 412 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQ++RA+A G G T + +L EK+G F+GY+ K C+ Sbjct: 413 LMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESK 460 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + L + V + G V+ + TPFYA +GGQ D+G + Sbjct: 461 ILALLDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AK 504 Query: 541 LQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK ++ + V+ G L+ + ID + R Q++ +HSATHLLHHAL Sbjct: 505 REVLDTQK---FFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALRE 561 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSHVSQ GS + + LRFD TH K ++ EL+SIE VN++I + + M E+A Sbjct: 562 ILGSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEA 621 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG Sbjct: 622 KKSGAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAG 675 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRK 778 +RRIEA+ + A + Q E+L + LK +++ V+++ E L+ + K Sbjct: 676 VRRIEAVVSKAALEFVKNQLEELSKVKDELK--NNDILNGVKKLKNEILSLKNELKNSSK 733 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 +L+ +++ +I + +D+ ++K+++D + K +I+L+ + EK Sbjct: 734 TELDSKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK---- 781 Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I + + D A L + +A++L GG GGGR A +GG + +K ++A+ Sbjct: 782 -ITLAAGVKDAPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831 >gi|237803179|ref|YP_002888373.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT] gi|231274413|emb|CAX11208.1| alanyl-tRNA synthetase [Chlamydia trachomatis B/Jali20/OT] Length = 875 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 332/887 (37%), Positives = 491/887 (55%), Gaps = 55/887 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H + SS + P NDP+++FTN+GM FKNIF G+E+ Y TT Sbjct: 4 NTLRSNFLKFYANRNHTPVASSPVFPHNDPSILFTNAGMNQFKNIFLGKEQTSYTRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK+ AI AW++ F+ D Sbjct: 64 QKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKQDAISFAWEVSLSIFNFDPDF 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW+K L ++I R+T DNFWSMA+TGPCG CSE+ FD+GE Sbjct: 124 IYATVHEKDDEAFALWEKY--LPTNRIFRLTDKDNFWSMADTGPCGFCSELLFDRGEKFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P +GER++E WNLVFM+F + + L K +DTG GLER+ ++L E Sbjct: 182 KAASPLEDVDGERFLEYWNLVFMEFNRTSDGTLLALQKKCVDTGAGLERLVSLLAETETV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ +HLI E ++G Y RVI DH+RS SF IADG+LP N RGYVL Sbjct: 242 FEADVLRHLISKIENLSGTTYSPTEAKGAAFRVIADHIRSLSFAIADGLLPGNTERGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RRA+ Y + LG+ P + ++P+L MG AYPEL + I+E L +E+E F KT Sbjct: 302 RKILRRAVNYGKRLGFNRPFLADVVPSLVDVMGEAYPELSASVTQIQEVLTTEEEHFFKT 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL ++G+ AFKL DT+GLP+D + +L ID+ +F + Sbjct: 362 LQRGGNLLQQVLKSSASSAKISGEDAFKLKDTYGLPIDEIA-LLAKDYNYAIDMDTFEKL 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 E + R+R ++ + + F + ++FIGYD L F Sbjct: 421 EVEAKERSRKNTKKTKNDSDSV--FQDLDPTNTSEFIGYDTLSCDTF------------- 465 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 ++ I++ EI G + ++ TPFYA GGQ+GD+G + Sbjct: 466 ----------IEGIIKYNEIASSLEEGDEGAIILRTTPFYAGKGGQIGDSGEIFCESGTF 515 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++ G+ VH + +G L T M++ ++ R++ + NH+ HLLH AL L Sbjct: 516 LVSHTIAPKAGLIVHLGKLSQGSLTTTMAVTAQVNQNLRKKTANNHTGCHLLHKALEMTL 575 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G H+ Q GS + +R D TH+K ++ +L +IE VN+ I +N PV R + D ++ Sbjct: 576 GEHIRQAGSYVDSQKIRLDFTHNKALSPEDLLAIETLVNEKIRENDPVTIREVLYSDVMS 635 Query: 662 SGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 S G KY D VRVVS + S LCGGTH +TG+I I E ++ GI Sbjct: 636 SSEIKQFFGDKYGDIVRVVSAGF------SHELCGGTHAQATGDIGYFRITKEHAVATGI 689 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------Q 771 RRIEA TG+ A + QD L +A+ ++ + ++ ++ + EE + L Q Sbjct: 690 RRIEATTGEDAENIAREQDVDLNEIATVIQSPKDQILVKIRSVMEEKKDLAKQVADLENQ 749 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 L+ + K L SC KI D +++ + ++E + + ++ +A+ K+I + I L Sbjct: 750 LVQQQVKTLLT----SCEKICDTSYLVYYLTEEEGQRIQHYANAIHKEIPTNFISLWITE 805 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--GGRPHMAQ 876 K + VL V++DL R V L A++L GG GG+ AQ Sbjct: 806 KNGRYIVLSRVSDDLTKR--GVQAHTLLAELLAPYGGRCGGKAISAQ 850 >gi|253583470|ref|ZP_04860668.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725] gi|251834042|gb|EES62605.1| alanine-tRNA ligase [Fusobacterium varium ATCC 27725] Length = 866 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 349/907 (38%), Positives = 529/907 (58%), Gaps = 62/907 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF+ H+ S+SLIP +D TL+ T +GMVPFK F GQ++ Y VTT Sbjct: 5 NQIRKEFIEFFEAKHHKHFESASLIP-DDATLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AIQ +W+ +T+ +D+ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWSWEFVTEVLKIDKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+++V+ D+EA ++W + ++++R+ ++N+W+ TG CGPCSEI D G Sbjct: 120 LWVSVFTTDDEAEQIWIEKCNFPKERLVRLGEDENWWAAGPTGSCGPCSEIHVDLGPAY- 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A ++Q K Sbjct: 179 GGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAMVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 +NN++ DL LI+ + ++T +Y + N +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 SNNFETDLLFPLIEEAAKLTNSQYGRDEEENFSLKVITDHSRAVTFLINDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG++E + ++ + + M +AYP+L I++ ++ E+E+F Sbjct: 299 YVLRRILRRAVRHGRLLGHSELFLYKMVDKVVSMMENAYPDLRSNVEHIKKVVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TLD+G+ L++ + L I L+G+V FKLYDT+G P ++ ++I +G+ I Sbjct: 359 SRTLDQGMQLVNQEIEKLKAANITKLDGEVTFKLYDTYGFPYELTEEICQEKGIE-ISKE 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + EQ+ +ARA + + ++YGAT+F GY L K+ K+L Sbjct: 418 EFEAKMTEQKEKARAAREVVMEKGQDSFIEEFYDRYGATEFSGYTTL------KDTGKLL 471 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + D K ++FD TPFY E+GGQ D G G Sbjct: 472 SSRDGKD-------------------------NKKLMIFDVTPFYGESGGQAADIGMITG 506 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G ++ DVQK+ +GIF+H V +G L ID NR + NH+ATHLLH A Sbjct: 507 NGFEGKVIDVQKQ-KGIFIHTVEVLKGTPIEGEEYFLEIDEANRMATAKNHTATHLLHEA 565 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LGSHV Q GS + + LRFD H + +T+ EL+ +E+ VN+ IA+ + V M+ Sbjct: 566 LREVLGSHVQQAGSFVNGERLRFDFNHYEAMTAEELEKVEELVNEKIAEAIDVKIANMSM 625 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A +GA AL G KY D VRVVSVE S LCGGTH+ + G+I L I SE+ I Sbjct: 626 DEAKKAGATALFGDKYGDVVRVVSVEG-----FSIELCGGTHIDNIGKIGLFKIESEAGI 680 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQL 772 AGIRRIEA+TG+ A + + LK++ +K + N++ RVE+ I E ++L+ Sbjct: 681 AAGIRRIEAVTGKGAYKVVKDTEMLLKNVEKVVKSDEANLLDRVEKMVETIKENSKELEE 740 Query: 773 IHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + + R Q+ + L+ + I V + + +L+ ++D ++ K+ + +++L Sbjct: 741 LKS-RFTQIEAQALAENSEIINGVTVIMKTFKTRTADDLRKMIDYVKDKMTNTVVVLA-- 797 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S KA VT++L + A +L + A V+ GG GGGRP AQ+GG + K +A+ Sbjct: 798 SSTDKAIFAAGVTKELTSKVKAGNLVK-EAAVITGGNGGGRPDFAQAGGKDVTKIQEAMD 856 Query: 891 GVASFLK 897 V LK Sbjct: 857 SVKETLK 863 >gi|314933784|ref|ZP_07841149.1| alanine--tRNA ligase [Staphylococcus caprae C87] gi|313653934|gb|EFS17691.1| alanine--tRNA ligase [Staphylococcus caprae C87] Length = 876 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 349/917 (38%), Positives = 516/917 (56%), Gaps = 73/917 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT E ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T++ ED A+K+W + GL +IIRI NFW + E GP GP +EIF+D+G Sbjct: 123 EKLYVTIHPEDTGAYKIWNEDIGLDETRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGDE 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQNDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADG 289 MA++ Q NY+ DLF +I E V+G KY E ++ +VI DH+R+ +F IADG Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENVSGKKYLEVEEQDVA-FKVIADHIRTIAFAIADG 292 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 293 ALPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKR 352 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ KD + G+ AFKLYDT+G P+++ +++ Sbjct: 353 VIKSEEERFHETLEEGLSILNQLIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQE 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL+ +D+ +F +++QR RAR A ++ LK + F+GY+ Sbjct: 413 GLS-VDMTTFENEMQQQRDRARQARQSSQSMQIQSEV---LKNITDDSTFVGYE------ 462 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T SI+ ++ GE VE +G+ V TPFYA +GGQ Sbjct: 463 -----------------TTDYQSIITHLIYNGEEVESVEAGETVYFTLKATPFYAVSGGQ 505 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G D + +++V K G +H IV+ G + +++ ++RR + NH Sbjct: 506 VADEGTIGNDKFEIAVSEVTKAPNGQNLHKGIVQYGQATVGAEVDASVNKEDRRAIQKNH 565 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLLH AL +LG HV+Q GS + D LRFD +H P+T EL +E VN+ I + + Sbjct: 566 SATHLLHAALKEVLGYHVNQAGSLVEADRLRFDFSHFGPMTQEELDQVERRVNEEIWRGI 625 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V + M ++A + GA AL G KY+D VRVV++ S LCGG HVS+T EI L Sbjct: 626 DVRIQEMGIDEAKSMGAMALFGEKYSDIVRVVNM-----APFSIELCGGIHVSNTAEIGL 680 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766 IVSES AG+RRIEA+TG+ A +L K ++ + +KV S VVG+V ++ EE Sbjct: 681 FKIVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNHVKVKSDEQVVGKVTQLQEE 740 Query: 767 YRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + L +R ++ NVED I D+ ++ + ++K ++S MD + K+ Sbjct: 741 EKSLLKQLEQRNKEITSLKMGNVED-QVEVINDLKVLATEVEVPNAKAIRSTMDDFKSKL 799 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 Q II+L + + K S++ V + L D+ A D+ + A ++ GG GGGRP MAQ GG Sbjct: 800 QDTIIVLAS-NVDGKVSIIATVPKSLTDQVKAGDIIKNMAPIV-GGKGGGRPDMAQGGGT 857 Query: 881 NGNKADQAIAGVASFLK 897 +A+ + ++K Sbjct: 858 QPENITEALHFLKDYIK 874 >gi|157164208|ref|YP_001467070.1| alanyl-tRNA synthetase [Campylobacter concisus 13826] gi|205830011|sp|A7ZE62|SYA_CAMC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|112800400|gb|EAT97744.1| alanyl-tRNA synthetase [Campylobacter concisus 13826] Length = 852 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 347/898 (38%), Positives = 523/898 (58%), Gaps = 68/898 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQ 59 M N+ IR +L+FF+ GHE++ S+ L+P ND TL+FTN+GMVPFK+IFTG+ +P Sbjct: 1 MQNLD-IRKAYLDFFKSKGHEVVASAPLVP-NDATLLFTNAGMVPFKSIFTGEVPRPTPP 58 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T+ Q C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ Sbjct: 59 IRTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKKEAIAYAWEFVTEVLK 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + +LY+TV++ D EAF++W + ++ ++I R +DNFW M +TGPCGPCSEIF+DQ Sbjct: 119 LPKDKLYVTVHESDYEAFEIWS--THIAKERIYRFGDHDNFWQMGDTGPCGPCSEIFYDQ 176 Query: 180 GE---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 G P G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + Sbjct: 177 GAEHFNTPEDYMGG--DGDRFLEIWNLVFMQYERSADGKLSPLPKPSIDTGMGLERVTAI 234 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 LQ K +NYD LF LI ++ G Y + ++RVI DH+RS +FL+A G EG Sbjct: 235 LQGKFSNYDSTLFMPLISEVAKLCGKPYVYESGASYRVISDHIRSVTFLLAQGTTFDKEG 294 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ + LLG EP M L+ +C MG Y L K ++E ++ E+E Sbjct: 295 RGYVLRRILRRAIRHGYLLGIKEPFMYKLVDKVCELMGGHYTYLNDKKAAVKEQIKLEEE 354 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF T+ GL L + L + EI +G+ AFKLYDT G PLD+ D+L +GL +D Sbjct: 355 RFLATIASGLELFESELKNT--KEIFSGEAAFKLYDTFGFPLDLTADMLREKGLK-VDEA 411 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ + EQ++RA+A G G + + + L EK+G +FIGY+ L+ Sbjct: 412 RFDELMSEQKARAKAAWKGSGDKSAKGDFKELLEKFGENKFIGYEELKSK---------- 461 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S I+ + ++ + ++ +G++ V+FD TPFYA++GGQ GD G +G Sbjct: 462 ------------SKILALLDEEFKNIDGLDAGKEGWVMFDVTPFYAQSGGQCGDNGKIVG 509 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ-----NRRQLSINHSATH 591 + + D +K H + +++T +L + + + +R + + +HSATH Sbjct: 510 ---KADVLDTEK-------FHGL-NLSLVKTSAALKVGDEVELEVGSDRAETARHHSATH 558 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ++G+H++Q GS + D LRFD +H K ++ E+ +E+ VN+ I T Sbjct: 559 LLHAALRAVVGTHIAQAGSNVEADRLRFDFSHPKALSGEEISKVENLVNEWIVNGANAKT 618 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 ++M E+A SGA AL KY D+VRVVS G S LCGGTHV + EI +I Sbjct: 619 QVMELEEAKKSGAIALFNEKYADKVRVVSF-----GDVSKELCGGTHVKNIDEIGSFFIT 673 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 ES + AG+RRIEA+ + A + + + + + ++ + V+++ E + L Sbjct: 674 KESGVSAGVRRIEAVCSRAALN--LARSFRAELEELKEELKSAEPLNAVKKLKGEIKGL- 730 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K KL+ N ++ +VN ++ +DS ++K+++D + + + I+L+ + Sbjct: 731 ----KDKLK-NAKNSHALAFLNVNDTKLCVASIDSGDIKTLIDEFKNEHEKAAILLIQVD 785 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +E K S+ V + A + +A++L GG GGG+ A +GG N + AI Sbjct: 786 EEGKISLAAGVKNAPI---KAGAWVKFAAQIL-GGNGGGKDDFATAGGKNALAIEDAI 839 >gi|16331117|ref|NP_441845.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6803] gi|2500959|sp|P74423|SYA_SYNY3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|1653611|dbj|BAA18523.1| alanyl-tRNA synthetase [Synechocystis sp. PCC 6803] Length = 877 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 359/896 (40%), Positives = 522/896 (58%), Gaps = 54/896 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF H++LPS+SL+P DPT++ T +GM+PFK IF GQ+ + TT QK Sbjct: 13 IRQQFLNFFADRQHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKSAEFPRATTSQK 71 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK +AI AW+L T+ F L RL Sbjct: 72 CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKSQAIAWAWELSTQVFKLPAERLV 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++V++ED+EAF +W+ G+ A +I R+ +DNFW TGPCGPCSEI++D + G Sbjct: 128 VSVFEEDDEAFAIWRDEIGIPAHRIQRMGADDNFWVSGPTGPCGPCSEIYYDFHPEL-GD 186 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 E+ R+IE +NLVFMQ+ + N L K +IDTGMGLERMA +LQ+ NNY+ Sbjct: 187 EKLDLEDDSRFIEFYNLVFMQYNRDNAGNLTPLEKKNIDTGMGLERMAQILQKVPNNYET 246 Query: 247 DLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DL +IQ + + G+ Y N V+ +VI DH+RS +IADGI +N GRGYVLRR Sbjct: 247 DLIFPIIQTAANIAGIDYAQANEKTKVSLKVIGDHVRSVVHMIADGISASNLGRGYVLRR 306 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 ++RR + + RLLG + YP +++ + LIE+ L+ E+ F KTL+ Sbjct: 307 LIRRVVRHGRLLGINGEFTTKVAATAVQLAQPVYPNVLERQSLIEQELQREEAAFLKTLE 366 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 RG LL +++ G EI D AF LYDT G PL++ Q+I +G+ +D+ F +A++ Sbjct: 367 RGEKLLADLMAD-GVTEIAGAD-AFTLYDTFGFPLELTQEIAEEQGIT-VDVEGFEKAMQ 423 Query: 424 EQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 EQ+ R++A ++ L T ++ L T+F+GY L+ Sbjct: 424 EQQERSKAAHETIDL---TVQESLDKLANHIHPTEFLGYTDLQS---------------- 464 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 S+IVKA++ GE+V++AV+GQ V++V DQTPFY E+GGQ+GD G GD + + Sbjct: 465 -------SAIVKAVLVGGELVDQAVAGQTVQIVLDQTPFYGESGGQIGDKGFLNGDNLLI 517 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +I DV K+ GIF+H VERG ++ ++ TID RR+ NH+ATHLL AL ++ Sbjct: 518 RIEDV-KRESGIFIHFGRVERGTVQIGTTITATIDRACRRRAQANHTATHLLQSALKRVV 576 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 +SQ GS + + LRFD + +T EL+ IED +N IA+ +M DA A Sbjct: 577 DEGISQAGSLVDFNRLRFDFNSPRAVTMEELQQIEDLINQWIAEAHQTEVAVMPIADAKA 636 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA A+ G KY VRV+ V GV S LCGGTHV++T EI L IV+E+ I AG+R Sbjct: 637 KGAIAMFGEKYGAEVRVIDVP----GV-SLELCGGTHVANTAEIGLFKIVAETGIAAGVR 691 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKRKL 779 RIEA+ G +L ++ +K L LK + RV ++ +E + + QL K++L Sbjct: 692 RIEAVAGPSVLDYLNVREAVVKELGDRLKAKPEEIPDRVHQLQQELKASQKQLEALKQEL 751 Query: 780 QLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 L + + + + + VD + LK+ + LQ+K+ ++L I +E K Sbjct: 752 ALQKSEQLLTQAQTVGEFKILVADLGTVDGESLKTAAERLQQKLGESAVVLASIPEEGKV 811 Query: 837 SVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S++ + L+ + A AK+ GGGGGGRP++AQ+GG + +K +A+A Sbjct: 812 SLVAAFSPQLVKTKQLKAGQFIGAIAKIC-GGGGGGRPNLAQAGGRDASKLPEALA 866 >gi|321312266|ref|YP_004204553.1| alanyl-tRNA synthetase [Bacillus subtilis BSn5] gi|320018540|gb|ADV93526.1| alanyl-tRNA synthetase [Bacillus subtilis BSn5] Length = 878 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 358/912 (39%), Positives = 532/912 (58%), Gaps = 62/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +TV+ EDEEA++ W K G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E +RY+E+WNLVF +F LPK +IDTGMGLERM +V Sbjct: 180 YGNDPEDPELYPGG--ENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294 +Q N+D DLF +I+A+E ++G Y +N+ + +VI DH+R+ +F ++DG LP+N Sbjct: 238 IQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ + P M L+P + M YPE+ + I + +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKVIKTE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +ERF +TL+ GL +L ++ KD+ +++G FKLYDT+G P+++ ++ + Sbjct: 358 EERFHETLNEGLAILSEMIKK-EKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + +QR RAR +GS + +L++ + F+GY Sbjct: 417 -VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQ--------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T ++I+ ++Q G+++EEA G+ V+++ D+TPFYAE+GGQ+GD Sbjct: 465 -------------TQADANII-VLLQDGQLIEEAHEGESVQIILDETPFYAESGGQIGDK 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++I DVQK G VH +VE G ++ + + ++ R + NH+ATH Sbjct: 511 GYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I ++PV Sbjct: 571 LLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSI 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L IV Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I AG RRIEA+TGQ A + Q LK A LK + V RV + E + Q Sbjct: 686 SESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELKDAQ 745 Query: 772 LIHAKRKLQL-NVED---LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +L NVE LS K D VN ++ ++ D L++++D L+ K+ S +I+ Sbjct: 746 RENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSAVIV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G + K ++ VT+DL+++ +A L + +A+V GGGGGGRP MAQ+GG K Sbjct: 806 L-GAVQNDKVNISAGVTKDLIEKGLHAGKLVKQAAEVC-GGGGGGRPDMAQAGGKQPEKL 863 Query: 886 DQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 EEALASVEDWVK 875 >gi|166365301|ref|YP_001657574.1| alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843] gi|205830148|sp|B0JI84|SYA_MICAN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|166087674|dbj|BAG02382.1| alanyl-tRNA synthetase [Microcystis aeruginosa NIES-843] Length = 874 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 346/908 (38%), Positives = 520/908 (57%), Gaps = 62/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FF H++LPS+SL+P DPT++ T +GM+PFK IF GQ+ P + TT Sbjct: 8 SEIRQRFLDFFAARNHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKTPEFPRATTS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI AW+L T+ F+L R Sbjct: 67 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFNLPPER 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ EDEEAF +W+ G+ A +I ++ DNFW TGPCGPCSEI++D + Sbjct: 123 LVVSVFKEDEEAFAIWRDKIGIPAHRIQKMGEEDNFWVSGPTGPCGPCSEIYYDFHPEL- 181 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ NNY Sbjct: 182 GDKTIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLANKNIDTGMGLERMAQILQKVANNY 241 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL ++ + ++ + Y+ + V+ +VI DH+RS +IADGI +N RGYVL Sbjct: 242 ETDLIFPIVAEAARLAAIDYQKADEKTKVSLKVIGDHVRSVVHMIADGISASNTDRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + S Y + + + +I+ L E+ RF +T Sbjct: 302 RRLIRRVVRHGRLIGIEGQFITKVAEVAIALSESVYGNVRERETVIKAELEREEARFLET 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL+ +L + ++G AF LYDT+G PL++ Q+I +GL+ +D F Q Sbjct: 362 LERGEKLLESILEK--EKSQISGVDAFTLYDTYGFPLELTQEIAEEQGLS-VDTAGFEQE 418 Query: 422 L--EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + ++QRS+A ++ L T + L E T+F+GY L+ Sbjct: 419 MKKQQQRSKAAHETIDL---TVQGSLDKLAEHIHPTEFLGYTDLQA-------------- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ V A++ G+ VE A +G +V+VV D+TPFYAE+GGQ+GD G GD + Sbjct: 462 ---------TATVTAVLVAGKTVESAAAGTEVQVVLDRTPFYAESGGQIGDKGYLTGDNL 512 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DVQK++ GIF+H +ERGI+ T ++ ID RR+ NH+ATHLL AL Sbjct: 513 LIRIEDVQKES-GIFIHFGRIERGIVTTGDTINAQIDRSCRRRAQANHTATHLLQSALKK 571 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ +SQ GS ++ D LRFD +P+TS+EL+ +E+ +N IA+ +M E+A Sbjct: 572 LVDGGISQAGSLVSFDRLRFDFNCPRPLTSSELQQVEEQINTWIAEAHDTQIAVMGLEEA 631 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY VRV+ + S LCGGTHV +T EI L I+SE+ I AG Sbjct: 632 KQKGAIAMFGEKYGSEVRVIDIPS-----VSMELCGGTHVKNTAEIGLFKIISETGIAAG 686 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777 IRRIEA+ G ++L +D+ +++L KV + R+ + E + + QL K+ Sbjct: 687 IRRIEAVAGPAVLAYLNERDQVVRALCDRFKVKPLEIPDRITALQSELKGTQKQLEAVKQ 746 Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L LN D I + + + ++D+ L + + LQ+K+ G ++L Sbjct: 747 ELALNKSDALLSQAESIGEFKLLVASLGDIDANALMAAAERLQQKLGEGAVILASTPAAD 806 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGPNGNKADQA 888 K S++ + ++ D + K +G GGGGGRP++AQ+GG + +K +A Sbjct: 807 KVSLVAAFSPRVIK-----DKGLQAGKFIGAIAKICAGGGGGRPNLAQAGGRDASKLSEA 861 Query: 889 IAGVASFL 896 +A S L Sbjct: 862 LAKAKSQL 869 >gi|153814718|ref|ZP_01967386.1| hypothetical protein RUMTOR_00933 [Ruminococcus torques ATCC 27756] gi|145847749|gb|EDK24667.1| hypothetical protein RUMTOR_00933 [Ruminococcus torques ATCC 27756] Length = 880 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 358/893 (40%), Positives = 523/893 (58%), Gaps = 54/893 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFKE AIQ W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIQWTWEFLTEVVGLDPN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY++D EAF++W K G+ A++I + DNFW +GPCGPCSE+++D+GE Sbjct: 122 RLYPSVYEDDAEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V+Q+ Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYSELEQKNIDTGMGLERLASVVQDVD 240 Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +D+D K H+ + +E+ G +Y NN V+ RVI DH+RS +F+I+DGI+P+NEGR Sbjct: 241 SIFDVDTIKALRDHVCRLAEKEYGEEY--NNDVSIRVITDHVRSVTFMISDGIMPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + + L + YPEL + K I + E+E+ Sbjct: 299 GYVLRRLLRRACRHGRLLGIHKGFLPELAETVIAGSKDGYPELEEKKEFILNVISKEEEQ 358 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KT+D+GL +L ++S + K E ILNG+ AF+LYDT+G PLD+ ++IL +GL +D Sbjct: 359 FNKTIDQGLGILAEMISDMEKKEEKILNGEDAFRLYDTYGFPLDLTKEILEEKGLC-VDE 417 Query: 416 ISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F ++E QR +AR A + G ++ S+ ++F+GY+ L Sbjct: 418 DGFKASMEVQRKKARDAREVTNYMGADVTVYESIDPNV-TSEFVGYEHLT---------- 466 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S V + + EI + G+ V +TPFYA +GGQ DTG Sbjct: 467 -------------WESDVTVLTTETEIADALSEGEHGTVFVQETPFYATSGGQEADTGYI 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 ++ D K G H ++ +G++R+ +VL +D + R + NHSATHLL Sbjct: 514 RTAEGEFKVEDTVKLLGGKVGHVGVMTKGMIRSGDKVVLEVDAKKRALSARNHSATHLLQ 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL T+LGSHV Q GS + D LRFD TH +T E+ +E VN+ IA+ V + M Sbjct: 574 KALRTVLGSHVEQAGSSVNEDRLRFDFTHFSAMTEDEITQVEKLVNESIAKAYDVDIKNM 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E+A +GA AL G KY D VRVV++ G +S CGGTHV++T EIM L IVSE+ Sbjct: 634 PIEEAKKTGAQALFGEKYGDIVRVVNM-----GDYSIEFCGGTHVNNTSEIMALKIVSET 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+T + + +EKLK+ A+ LK + N+ ++ + E + L ++ Sbjct: 689 GVAAGVRRIEALTSEGLMKYYAQTEEKLKNAAALLKATPDNLSDKIHHMIAENKTLHSEV 748 Query: 773 IHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K+ Q D+ ++ + ++ I VD L+ + D L++K+ G+++L Sbjct: 749 ESLKSKIAQSAAGDVLDQVKEVKGIKLLAAQIEGVDMNGLRELGDQLKEKLGDGVVVLAS 808 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S + K S++ T+ + + +A +L + A + GGGGGGRP+MAQ+GG N Sbjct: 809 GS-DSKVSLMATATDGAMKKGAHAGNLVKAIAGCV-GGGGGGRPNMAQAGGKN 859 >gi|269121339|ref|YP_003309516.1| alanyl-tRNA synthetase [Sebaldella termitidis ATCC 33386] gi|268615217|gb|ACZ09585.1| alanyl-tRNA synthetase [Sebaldella termitidis ATCC 33386] Length = 870 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 336/915 (36%), Positives = 535/915 (58%), Gaps = 71/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +F++FF+ H+ S+SLIP +D TL+ T +GMVPFK+ F G+++ ++ +TT Sbjct: 4 NEIRKSFIDFFKSKEHKYFESASLIP-DDKTLLLTVAGMVPFKSFFLGEKEAPFKRITTY 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVG T RH TFFEMLGNFSFG YFK AI +W+ +T+ LD + Sbjct: 63 QKCIRT----NDLENVGVTTRHQTFFEMLGNFSFGDYFKREAIFWSWEYITEILKLDSEK 118 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+++V+ +D+EA+ +W K G+ ++I+R+ +DN+W+ G CGPCSEI+ D GE + Sbjct: 119 LWVSVFLDDDEAYDIWNKEVGVPEERIVRLGEDDNWWAAGPIGSCGPCSEIYIDLGEKLG 178 Query: 185 GG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G PG + +RY+EIWNLVF ++ + LP+ +IDTG GLER+A V+Q+K Sbjct: 179 CGNLDCKPGC--DCDRYLEIWNLVFTEWNRLEDGSLIPLPEKNIDTGAGLERIAAVMQKK 236 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 +N+D DLF +I +E++ ++ E NN + ++I DH+R+++FLI DG+LP+NEGRG Sbjct: 237 ESNFDTDLFIPIINETEKI--LEVERNNKTDKALKIIADHVRAAAFLIGDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 Y+LR+++RRA A R+ + + L+P + M AYPE+ IE+ ++ Sbjct: 295 YILRKLIRRAFGVASTIKERIFEKEDIFLYRLVPVVAEIMKEAYPEMESKIDYIEKVMKI 354 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F TL G+ +L + L KD + +++FKLYDT+G P ++ +++L + Sbjct: 355 EEEKFTVTLKNGVEILKEEVEKLKKDGKDKFPSEISFKLYDTYGFPFELTKEVLEYEEIE 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 + F + LEEQ+ R+++ + ++ EK+G T+FIGY E Sbjct: 415 -VSEDEFLEKLEEQKIRSKSSKETISDMIKDEFIDEFYEKHGKTKFIGY----------E 463 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +++ + I+ ++G S+ E++FDQTPFYAE+GGQ+ DT Sbjct: 464 EKEAKAKILHINKSHGSSN--------------------YEIIFDQTPFYAESGGQVADT 503 Query: 532 GCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSA 589 G D ++ +V KK + +++H + +GI+ + L L ID R+ NH+A Sbjct: 504 GIINSQDLFEGKVVNVIKKKD-VYIHEVELIKGIIPKIGDELTLKIDKFKRKDTQRNHTA 562 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 TH+LH AL +LGSHV Q+GS + + LRFD +H + ++ ++++IE N I+ +N+ + Sbjct: 563 THILHKALREVLGSHVEQSGSLVDSERLRFDFSHYEAVSPEQIEAIERIANQIVLENIEL 622 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + E A A GA AL G KY D VRVV + S LCGGTHV STGEI L+ Sbjct: 623 AVYNEDIETAKARGAMALFGDKYGDEVRVVEIPQ-----FSIELCGGTHVKSTGEIGLIN 677 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I SES I +G+RRI A TG ++ + +E K LA LKV + + VE++ E Y+ Sbjct: 678 IESESGIASGVRRITATTGYKSLDFVNTLEESQKELAKSLKVEEKKIKEAVEKLKESYKD 737 Query: 770 LQLIHAK---RKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSG 823 L+ + + L+ + DL H I ++N +I D++ELK ++D ++ K++SG Sbjct: 738 LEKDYNDLQMKFLKYEINDLMGH-IIEINGTKVLIKGFENKDNEELKEIVDRVKDKLKSG 796 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ L+G + A L V++DL + A D+ + +K+ G GGGRP AQ+GG G Sbjct: 797 VV-LIG-ANNGNAMFLAGVSKDLTGKIKAGDIVKEVSKI-ANGNGGGRPDFAQAGGKAGE 853 Query: 884 KADQAIAGVASFLKK 898 K +A+ +L++ Sbjct: 854 KVYEALEHGKRYLEE 868 >gi|239637575|ref|ZP_04678547.1| alanyl-tRNA synthetase [Staphylococcus warneri L37603] gi|239596793|gb|EEQ79318.1| alanyl-tRNA synthetase [Staphylococcus warneri L37603] Length = 876 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 351/924 (37%), Positives = 518/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKNEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 +LY+T++ ED EA+K+W + GL +IIRI N FW + E GP GP +EIF+D+GE Sbjct: 123 EKLYVTIHPEDIEAYKIWNEKIGLEESRIIRIEGN--FWDIGE-GPSGPNTEIFYDRGED 179 Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 FGKDDPEEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I EQV+G Y NN V +VI DH+R+ SF IADG Sbjct: 234 MTSISQNVRTNYETDLFMPIINEVEQVSGKNYLQNNDQDVAFKVIADHIRTISFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKSDFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+G +S G EI NG AFKLYDT+G P+++ +++ Sbjct: 354 IKSEEERFHETLEEGLSILNGFISQAKEGNQEI-NGKDAFKLYDTYGFPIELTEELATQE 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK + F+GYD Sbjct: 413 GLT-VDMTTFETEMQQQRDRARQARQNSQSMQVQSEV-------LKNITTESHFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++Q GE V++A + + + + TPFYA Sbjct: 463 ---------------------TTDYQTELIHLIQNGEEVDKADAEETIYFMLKDTPFYAV 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ D G D + +T+V K G +H V+ G + + +++ RR + Sbjct: 502 SGGQVADKGIVSNDHFEIAVTEVTKAPNGQNLHKGTVQFGQVNKGSEVDASVNKDERRSI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG HV+Q GS + P+ LRFD +H +T E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKEVLGEHVNQAGSLVEPNRLRFDFSHFGQMTQDEINQVERRVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + MN ++A A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 622 WRGIDVRIQEMNIDEAKAMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVENTA 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L E+ + +KV + VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEHIQEQFNLVKDLVKVKTDDQVVDKITQ 736 Query: 763 IWEEYRKL--QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 I +E + L QL +++ N+ED ++ +N + + +EVD +K ++S M Sbjct: 737 IQDEEKSLIKQLEQRDKEITSLKMGNIED----QVETINGLKVLATEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q +I+L + + K S++ V +D D+ A D+ + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTVIILAS-NVDDKVSIIATVPKDQTDKIKAGDIIKNMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG +++ + ++K Sbjct: 851 MAQGGGTQPENITESLRFIKDYIK 874 >gi|307693255|ref|ZP_07635492.1| alanyl-tRNA synthetase [Ruminococcaceae bacterium D16] Length = 890 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 342/912 (37%), Positives = 522/912 (57%), Gaps = 54/912 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL FF+ GH LPS SLIP ND +L+ NSGM P K FTG+++P VTT Sbjct: 9 LNELREMFLSFFETKGHLRLPSFSLIPQNDASLLLINSGMAPMKPFFTGEQEPPRHRVTT 68 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEF-DLD 121 QKC+R G D++N+G+T RH T+FEMLGNFSFG YFK+ AI AW+ LT KE+ LD Sbjct: 69 CQKCIRTG----DIENIGKTARHGTYFEMLGNFSFGDYFKKEAIHWAWEFLTSKEWVGLD 124 Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RLY +V+ D+EAF++W + G+ A++I + DNFW +GPCGPCSEI Sbjct: 125 PERLYPSVFAGNETTPADDEAFRIWNEEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEI 183 Query: 176 FFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 ++D+GE G PG + + +RYIE+WN+VF QF+ + L + +IDTGMGLER+ Sbjct: 184 YYDRGEQWGCGKPGCTVGCDCDRYIEVWNVVFSQFDNDGENHYTELKQKNIDTGMGLERL 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A V Q + +D+D ++ + ++TG Y ++ V+ RVI DH+RS++F+I DG+L Sbjct: 244 ACVCQGVPSLFDVDTVMNITRKVTEITGASYGQSHATDVSLRVITDHIRSATFMICDGVL 303 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA + +LLG +P + + + E YPEL + + I + + Sbjct: 304 PSNEGRGYVLRRLLRRAARHGKLLGVNDPFLYTVCDTVIHENEGHYPELRERQDYITKVI 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLS-HLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409 R E+E F KT+D GL + + +LS H K E +G AFKLYDT+G P+D+ +++ +G Sbjct: 364 RVEEENFAKTIDGGLKIFNDMLSEHKAKGESTFSGADAFKLYDTYGFPIDLTLEMVEEQG 423 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D F++ ++EQR RAR LG + F + T+F+GYD Sbjct: 424 MK-LDEAEFHKQMDEQRQRARKAREALGDLGWAGVEFG--KDVPETEFVGYD-----HTA 475 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +D KV+ A+V + E EE + G + VV D+TPFYAE GGQ+ Sbjct: 476 IDDAKVV-----------------ALVVENEQAEEVMPGVEAIVVLDKTPFYAEMGGQVA 518 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G DG+ Q+TDVQK G ++H + +G+L+ ++ ID + R+ + HSA Sbjct: 519 DHGTISADGVTFQVTDVQKNKGGKYMHTGKLTQGVLKVGDTVSAAIDVKRRKAVMRAHSA 578 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL T+LG HV Q GS + D LRFD TH +T+ EL + VN+ + + + Sbjct: 579 THLLDKALRTVLGDHVHQAGSLVEEDRLRFDFTHFSALTAEELAKVSAMVNEAVLEGYDI 638 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T ++ E+A GA AL G KY D VRVV + G +S CGGTH+ +T ++ + + Sbjct: 639 HTDVLPIEEAKKKGAIALFGEKYGDTVRVVDM----GEGYSVEFCGGTHLDNTAKVGVFH 694 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I SE S+ +G+RRIEA TGQ + + E L A+ LK G + + E+ E + Sbjct: 695 ISSEFSVASGVRRIEATTGQASLDVMNRNQEMLFQAAAALKAKPGELREKAEQTMLEVKT 754 Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L + K K + + + ++ ++ ++ I++ D+ +L+ + D L+ K + + Sbjct: 755 LHQMVEKFKAKESAGEADRFLFGARQVGELKVLTATIADADANKLRQMGDMLRDKAPNVV 814 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ EK + + E + A ++ + + + GG GGG+P A GG + K Sbjct: 815 AVLATVNGEKITFLAVCGKEAVAKGIKAGEIIK-NVTAICGGKGGGKPDSAMGGGTDILK 873 Query: 885 ADQAIAGVASFL 896 D A+A + F+ Sbjct: 874 LDDALASIDDFV 885 >gi|16079794|ref|NP_390618.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|221310677|ref|ZP_03592524.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] gi|221315000|ref|ZP_03596805.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319921|ref|ZP_03601215.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324202|ref|ZP_03605496.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. SMY] gi|3122886|sp|O34526|SYA_BACSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|2635186|emb|CAB14682.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. 168] Length = 878 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 358/912 (39%), Positives = 531/912 (58%), Gaps = 62/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +TV+ EDEEA++ W K G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E +RY+E+WNLVF +F LPK +IDTGMGLERM +V Sbjct: 180 YGNDPEDPELYPGG--ENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294 +Q N+D DLF +I+A+E ++G Y +N+ + +VI DH+R+ +F ++DG LP+N Sbjct: 238 IQNVPTNFDTDLFVPIIKATESISGETYGKDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ + P M L+P + M YPE+ + I + +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMFDLVPVVAEIMADFYPEVKEKADFIAKVIKTE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +ERF +TL+ GL +L ++ KD+ +++G FKLYDT+G P+++ ++ + Sbjct: 358 EERFHETLNEGLAILSEMIKK-EKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + +QR RAR +GS + +L++ + F+GY K Sbjct: 417 -VDHEGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTVESTFVGYSQ------TKA 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 D ++ ++Q G+++EEA G+ V+++ D+TPFYAE+GGQ+GD Sbjct: 468 DANIIV-----------------LLQDGQLIEEAHEGESVQIILDETPFYAESGGQIGDK 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++I DVQK G VH +VE G ++ + + ++ R + NH+ATH Sbjct: 511 GYLRSEQAVVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSGVIKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I ++PV Sbjct: 571 LLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSI 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L IV Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVRNTAEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I AG RRIEA+TGQ A + Q LK A LK + V RV + E + Q Sbjct: 686 SESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQTADELKTNIKEVPKRVAALQAELKDAQ 745 Query: 772 LIHAKRKLQL-NVED---LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +L NVE LS K D VN ++ ++ D L++++D L+ K+ S +I+ Sbjct: 746 RENESLLAKLGNVEAGAILSKVKEVDGVNVLAAKVNAKDMNHLRTMVDELKAKLGSAVIV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G + K ++ VT+DL+++ +A L + +A+V GGGGGGRP MAQ+GG K Sbjct: 806 L-GAVQNDKVNISAGVTKDLIEKGLHAGKLVKQAAEVC-GGGGGGRPDMAQAGGKQPEKL 863 Query: 886 DQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 EEALASVEDWVK 875 >gi|229013606|ref|ZP_04170737.1| Alanyl-tRNA synthetase [Bacillus mycoides DSM 2048] gi|228747665|gb|EEL97537.1| Alanyl-tRNA synthetase [Bacillus mycoides DSM 2048] Length = 880 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 356/913 (38%), Positives = 538/913 (58%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGES 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGESILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDQAGFENEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S V A+V+ GE + + ++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNVVALVKNGEYTDSLQADEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L E ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKEAAVKALIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL ILG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDILGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESIDVAI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKAIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFTEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLASVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|229098860|ref|ZP_04229796.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-29] gi|229117885|ref|ZP_04247247.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-3] gi|228665542|gb|EEL21022.1| Alanyl-tRNA synthetase [Bacillus cereus Rock1-3] gi|228684533|gb|EEL38475.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-29] Length = 880 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 540/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHKGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S + A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNIVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKGAAVKAVIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESINVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKSIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +LV ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLVSVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|310778164|ref|YP_003966497.1| alanyl-tRNA synthetase [Ilyobacter polytropus DSM 2926] gi|309747487|gb|ADO82149.1| alanyl-tRNA synthetase [Ilyobacter polytropus DSM 2926] Length = 868 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 350/899 (38%), Positives = 530/899 (58%), Gaps = 60/899 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF++ H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ V T Sbjct: 5 NEIRQRFVEFFKEKEHKHYESASLIP-DDPTLLLTVAGMVPFKPFFLGQKEAPNSRVVTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVG+T RHHTFFEMLGNFSFG YFKE AI +W+ +T+ L++ + Sbjct: 64 QKCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKEEAIAWSWEFITEVLGLEKEK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 ++I+V+ D+EA K+W + + ++I+R+ DN+WS TG CGPCSEI+ D G Sbjct: 120 MWISVFTTDDEAEKIWIEKCNIPKERIVRLGEEDNWWSAGPTGSCGPCSEIYVDMGIEYG 179 Query: 185 G---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG E +R++EIWNLVF ++ ++ LPK +IDTG GLER+A+V+Q+K Sbjct: 180 GDENSKPGDPEADDRFLEIWNLVFTEWNKKEDGTLEPLPKKNIDTGAGLERIASVVQKKI 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGY 299 NNY+ DL +I+ + ++T +Y + +VI DH+R SFLI DG+LP+NEGRGY Sbjct: 240 NNYETDLILPIIEEAGRLTSSEYGKTEKTDFSLKVIADHIRGISFLINDGVLPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA+ + RLLG +E + L+ + M AYPE+++ I++ ++ E+E+F Sbjct: 300 VLRRVLRRAVRHGRLLGTSENFLYKLVDKVVEIMKGAYPEILENMEHIKKIIKIEEEKFS 359 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL +G+ +++ + + + L+G++ FKLYDT+G P ++ ++I C + + Sbjct: 360 HTLGQGMQMVNDEIEKAKESGENKLSGEITFKLYDTYGFPYELTEEI-CEEKDVEVYLEE 418 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +EEQ+ RAR+ + + +KYG T F GY+ L+ Sbjct: 419 FTAKMEEQKKRARSAREVVMEKGQDSFVEEFYDKYGKTVFEGYEKLQN------------ 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 K+IV E ++E KV ++F++TP YAE+GGQ D G D Sbjct: 467 ---------------KSIVYHVENIDE----NKVMLIFNKTPLYAESGGQASDHGTVTAD 507 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G++ +I DVQK+ E IF+H +V+ G +L+ + + LT+D + RR + NH+ATHLLH Sbjct: 508 GLKGKIIDVQKQKE-IFMHTVVVDEGMDLLKKGLEVTLTVDDERRRDIMRNHTATHLLHK 566 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LGSHV Q GS + D LRFD TH + +T +L+ +E VN I +N + + M Sbjct: 567 ALKDVLGSHVQQAGSLVDADRLRFDFTHYEAVTRDQLEEVEKIVNRQIFKNTSLKVQHMT 626 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A SG+ AL G KY D VRVV+V +SS LCGG HV TGEI L I++E+ Sbjct: 627 LDEAKESGSTALFGDKYGDLVRVVNVP-----GYSSELCGGIHVDRTGEIGLFNILTETG 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + AG RRIEA TG + + + + S++ LK ++ ++E+ E +R+ +L Sbjct: 682 VAAGTRRIEATTGVASYKTVNQMERLILSVSDALKTDPKHLEEKIEKTIEAFRETNKELE 741 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGI 830 K KL + I ++N + +I + KE L+ ++D + K+ S II+L G Sbjct: 742 ALKSKLASYEANSLFDNIEEINNVKVLIKAFEGKEAGSLREIVDKAKDKLGSCIIVL-GT 800 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E KA + VT+DL+ + A DL + AK+ GG GGGRP AQ+GG +G K +A+ Sbjct: 801 DNE-KAVFAVGVTKDLMSKVKAGDLVKEIAKI-AGGNGGGRPDFAQAGGKDGKKVPEAL 857 >gi|317500249|ref|ZP_07958478.1| alanine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087517|ref|ZP_08336451.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898345|gb|EFV20387.1| alanine-tRNA ligase [Lachnospiraceae bacterium 8_1_57FAA] gi|330406269|gb|EGG85786.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 3_1_46FAA] Length = 880 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 358/893 (40%), Positives = 523/893 (58%), Gaps = 54/893 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFKE AIQ W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIQWTWEFLTEVVGLDPN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY++D EAF++W K G+ A++I + DNFW +GPCGPCSE+++D+GE Sbjct: 122 RLYPSVYEDDAEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V+Q+ Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYSELEQKNIDTGMGLERLASVVQDVD 240 Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +D+D K H+ + +E+ G +Y NN V+ RVI DH+RS +F+I+DGI+P+NEGR Sbjct: 241 SIFDVDTIKALRDHVCRLAEKEYGEEY--NNDVSIRVITDHVRSVTFMISDGIMPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + + L + YPEL + K I + E+E+ Sbjct: 299 GYVLRRLLRRACRHGRLLGIHKGFLPELAETVIAGSKDGYPELEEKKEFILNVISKEEEQ 358 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KT+D+GL +L ++S + K E ILNG+ AF+LYDT+G PLD+ ++IL +GL +D Sbjct: 359 FNKTIDQGLGILAEMISDMEKKEEKILNGEDAFRLYDTYGFPLDLTKEILEEKGLC-VDE 417 Query: 416 ISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F ++E QR +AR A + G ++ S+ ++F+GY+ L Sbjct: 418 DGFKASMEVQRKKARDAREVTNYMGADVTVYESIDPNV-TSEFVGYEHLT---------- 466 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S V + + EI + G+ V +TPFYA +GGQ DTG Sbjct: 467 -------------WESDVTVLTTETEIADALSEGEHGTVFVQETPFYATSGGQEADTGYI 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 ++ D K G H ++ +G++R+ +VL +D + R + NHSATHLL Sbjct: 514 RTAEGEFKVEDTVKLLGGKVGHVGVMTKGMIRSGDKVVLEVDAKKRALSARNHSATHLLQ 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL T+LGSHV Q GS + D LRFD TH +T E+ +E VN+ IA+ V + M Sbjct: 574 KALRTVLGSHVEQAGSSVNEDRLRFDFTHFSAMTEDEITQVEKLVNESIAKAYDVDIKNM 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E+A +GA AL G KY D VRVV++ G +S CGGTHV++T EIM L IVSE+ Sbjct: 634 PIEEAKKTGAQALFGEKYGDIVRVVNM-----GDYSIEFCGGTHVNNTSEIMALKIVSET 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+T + + +EKLK+ A+ LK + N+ ++ + E + L ++ Sbjct: 689 GVAAGVRRIEALTSEGLMKYYAQTEEKLKNAAALLKATPDNLSDKIHHMIAENKTLHSEV 748 Query: 773 IHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K+ Q D+ ++ + ++ I VD L+ + D L++K+ G+++L Sbjct: 749 ESLKSKIAQSAAGDVLDQVKEVKGIKLLAAQIEGVDMNGLRELGDQLKEKLGDGVVVLAS 808 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S + K S++ T+ + + +A +L + A + GGGGGGRP+MAQ+GG N Sbjct: 809 GS-DGKVSLMATATDGAMKKGAHAGNLVKAIAGCV-GGGGGGRPNMAQAGGKN 859 >gi|195953907|ref|YP_002122197.1| alanyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1] gi|195933519|gb|ACG58219.1| alanyl-tRNA synthetase [Hydrogenobaculum sp. Y04AAS1] Length = 856 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 328/905 (36%), Positives = 514/905 (56%), Gaps = 67/905 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+ GH ++ SSS++P +DPTL+F N+GMVPFKN+F G E Y+ T+ QK Sbjct: 6 IREKFLSFFENKGHTVVKSSSIVPKSDPTLLFVNAGMVPFKNVFLGLESLPYKRATSCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C R GKHNDL++VGRT RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ L + ++Y Sbjct: 66 CFRVSGKHNDLESVGRTTRHHTFFEMLGNFSFGDYFKKEAILYAWEFVTEVLRLPKDKIY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++V+ D+EA+ +WK + + DKI R+ DNFW M ETGPCG SEI+ D+GE Sbjct: 126 VSVHQNDQEAYDIWKDMVKVPEDKIWRMGDEDNFWQMGETGPCGYSSEIYIDRGE----- 180 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 + ERY+EIWNLVFMQF + L K SIDTGMGLER+A+V+Q K +N++I Sbjct: 181 ---KYSQDERYLEIWNLVFMQFNKDESGHMEPLAKPSIDTGMGLERIASVIQGKDSNFEI 237 Query: 247 DLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D+ +I E ++ +Y+ + + RVI DH R+ + I++GI+P+NEGRGYV+R++ Sbjct: 238 DIIMPIIHFVEDLSSKRYKTDEETDIAMRVIADHSRACTVAISEGIIPSNEGRGYVVRKV 297 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + +G E + + + + +AYPEL +K ++ +++E+ RF +TL+ Sbjct: 298 LRRAVRFGYKIGIKEEFLYKSIDVVVDTLKNAYPELEMSKEFVKNIIKAEESRFLETLEN 357 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 L L D ++ K +++GD FK YDT+G PLDI+Q++ +G+ +D+ F + LE+ Sbjct: 358 SLELFDRYIAE-NKSNVISGDFIFKAYDTYGFPLDILQEMTHEKGMT-LDMKGFYELLEK 415 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q+ +R H ++++ S+K+K + F GY +E KVL Sbjct: 416 QKEESRKHF--KSEEKVDEVYLSIKDK-ARSIFTGY------THTEEQAKVLF------- 459 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 I++ G++ EE + ++ ++TPFY E GGQ+GD+G + Sbjct: 460 ----------IIKDGKMTEELKEQEDGIIILNKTPFYPEKGGQIGDSGILENSEALFIVN 509 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 D + +G+ H V +G LR ++ ID + R + +H++THLLH AL + G Sbjct: 510 DTKTPTDGVIAHIGKVIKGRLRVGTDVLAKIDKERREDIKRHHTSTHLLHAALRNMFGES 569 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 V Q GS + + LRFD T + + EL+++E +N+ I +N + + + ++AI +GA Sbjct: 570 VRQAGSYVGDEFLRFDFTFYRSLKPEELEALEAMINEEIMKNEEIFVKELPYQEAIKTGA 629 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 A+ KY D VRV+S G S LCGGTHV TG+I ++SESS+ AGIRRI Sbjct: 630 IAIFEEKYGDVVRVIS-----AGDFSKELCGGTHVKRTGDIGYFKLISESSVGAGIRRII 684 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLIHAK---- 776 A G++A + LK++ + ++ N++ RV EE+ E+ ++Q++ +K Sbjct: 685 AKAGRKAVREAYEDSKLLKTIYQEIGANKQNLLERVIALKEELKEKDNQIQMLKSKLVRL 744 Query: 777 -RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKK 835 K LN+E +I + I+ E L+ + D+ ++ + + + +SK K Sbjct: 745 EAKASLNIE-----QINGIKLYWGILEEASLDNLREIADSYRQHPNTVVFL---VSKSPK 796 Query: 836 ASVLIVVTEDLLDRFNAV--DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 S+LI ++DL A+ D+A+ G GGGR +AQ G + A+ + Sbjct: 797 KSILIARSKDLNYDMKAIIKDIAKPME-----GSGGGREDLAQGGVQKIETFNSALEVLK 851 Query: 894 SFLKK 898 S L K Sbjct: 852 SILSK 856 >gi|167767297|ref|ZP_02439350.1| hypothetical protein CLOSS21_01816 [Clostridium sp. SS2/1] gi|167711272|gb|EDS21851.1| hypothetical protein CLOSS21_01816 [Clostridium sp. SS2/1] Length = 868 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 356/899 (39%), Positives = 509/899 (56%), Gaps = 48/899 (5%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 +LEFF+ GH L S SL+P ND +L+ N+GM P K FTGQE P VTT QKC+R Sbjct: 2 YLEFFESKGHLALKSFSLVPKNDNSLLLINAGMAPLKPYFTGQEVPPRTRVTTCQKCIRT 61 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130 G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LTK LD RLY +VY Sbjct: 62 G----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTKVIGLDPDRLYPSVY 117 Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190 ++D+EAF++W+K G++ ++I R DNFW GPCGPCSEI++D+GE G P Sbjct: 118 EDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGSPDC 176 Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248 + + +RY+E+WN VF QFE L +IDTGMGLER+A V+QE + +D+D Sbjct: 177 TVGCDCDRYMEVWNNVFTQFENDGHNHYTELENKNIDTGMGLERLAVVVQEVDSIFDVDS 236 Query: 249 FKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306 K + +V G+ Y ++ V+ RVI DH+RS++F+++DGI P+NEGRGYVLRR++R Sbjct: 237 IKAIRDEICKVAGVTYGADHETDVSIRVITDHIRSATFMLSDGITPSNEGRGYVLRRLIR 296 Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366 RA + RLLG + + + E YPEL + I L E+++F KT+D+GL Sbjct: 297 RAARHGRLLGIDHLFLTDISKVVIRESKDGYPELEEKAEFIFNHLSQEEKQFNKTIDQGL 356 Query: 367 VLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +L + ++ G E+ D AFKLYDT+G PLD+ +IL +G +D F + ++ Sbjct: 357 SILADMEKAMNEKGSKELAGAD-AFKLYDTYGFPLDLTIEILEEKGFT-VDKEGFEKEMQ 414 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 QR ARA + + + T+F+GYD L C+ Sbjct: 415 VQRETARAARKTTNYMGADATVYEQLDPAMTTKFVGYDEL------------TCEGE--- 459 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 + A+ + E+V G K +V DQT FYA +GGQ D G I ++ Sbjct: 460 --------ITAMTTETEVVSTLNKGDKGTIVADQTAFYATSGGQEADKGVIISGDASFEV 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 DV K + G F H V G V T++ +NR + NHSATHLL AL +LG+ Sbjct: 512 EDVIKLSGGKFGHVGHVVEGTFNVGDKAVFTVNEKNRALGAKNHSATHLLQKALREVLGT 571 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS + LRFD TH P++ E+ +E VN+ IAQ+LPVVT++M+ E+A +G Sbjct: 572 HVEQAGSLNNAEHLRFDFTHFSPLSDDEIARVEKIVNEKIAQDLPVVTKVMSMEEAKKTG 631 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VRVVS+ G S LCGGTHV +TG I I+SE+ + +G+RRI Sbjct: 632 AMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVKNTGAITAFKILSETGVASGVRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+T Q ++ Q+E+LK A LK + ++ R+E + E ++L+ + K +L Sbjct: 687 EAVTDQGVFNYYHKQEEELKEAAKALKATPATLLTRIESLLAEVKELKSENESLKSKLAK 746 Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + L ++ V ++ I +VD L+ + D L++K+ G+I+L K V Sbjct: 747 DALGDVMDQVEEVKGVKLLATSIEDVDMNGLRELGDNLKEKLGEGVIVLASQKDGKVFLV 806 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 +V E +A +L + A + GGGGGGRP+MAQ+GG N +A+A V L+ Sbjct: 807 AMVTDEAQKAGAHAGNLIKAIAGCV-GGGGGGRPNMAQAGGKNPAGIPEAVAKVKEILE 864 >gi|269216088|ref|ZP_06159942.1| alanine--tRNA ligase [Slackia exigua ATCC 700122] gi|269130347|gb|EEZ61425.1| alanine--tRNA ligase [Slackia exigua ATCC 700122] Length = 901 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 353/922 (38%), Positives = 512/922 (55%), Gaps = 73/922 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF--TGQEKPVYQA 60 + IR +L FF++ G + LPSSSLIP +DP+L+ T++GMV FK F + P Y Sbjct: 23 TTAEIREKYLRFFEEKGCKRLPSSSLIP-DDPSLLLTSAGMVQFKPYFLHVKEFDPNYIG 81 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TTVQKCVR ND+D +G T RH +FFEMLGNFSFG YFK A++ T+ +L Sbjct: 82 ATTVQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGVYFKHEMCTWAYEFSTEVLEL 137 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY TV+++D+E ++WK + G+ I R+ +DNFW TGPCGPCSEI+FDQG Sbjct: 138 PKDRLYFTVFEDDDETIEIWKSL-GVLESHITRLGEDDNFWRAGPTGPCGPCSEIYFDQG 196 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G PG ++G+R++E WN VF QF+ Q LP +IDTGMGLERMA ++Q Sbjct: 197 PDFEGDAPG--DDGDRFLEFWNCVFTQFDGQEDGTLAPLPTKNIDTGMGLERMAAIMQGV 254 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH------------RVIVDHLRSSSFLIAD 288 +NY+ D+ + L+ E+++G Y G R+ DH RS +F+IAD Sbjct: 255 QSNYETDVLRDLVAVGERLSGASYRGGTNATAGDGAQAKVDLSLRICADHSRSVAFMIAD 314 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 GILP+NEGRGYVLRR++RRA+ + LG P + L + MG YPE++ + L+E Sbjct: 315 GILPSNEGRGYVLRRLLRRAVMHGHKLGIEGPFLGEYLAKIIELMGDVYPEIVDNRELVE 374 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + SE+ERFG+TL G L LS L +L G AF L+DT+G P+++ ++I C+ Sbjct: 375 RIILSEEERFGRTLRTGQAYLVDELSAL-DGSVLPGQTAFTLHDTYGFPIELTEEI-CSE 432 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--------LKEKYGATQFIGY 460 +D F+ +EEQRSRARA + G E W + LKE GA F+GY Sbjct: 433 SGVTVDHAGFDACMEEQRSRARAAT----KGDAEAAWSTYGGVHAETLKE-VGANIFVGY 487 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + T SSIV A+++ G V G++ E+V +TPF Sbjct: 488 EH----------------------TEAASSIV-ALIKDGARVARIEQGEEAELVLAKTPF 524 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE GG++GDTG G G Q+ D + G+ H V +G L + +D R Sbjct: 525 YAEMGGEVGDTGTIEGAGGYAQVEDTKAPEAGLICHRVKVVKGSLSVGEDVAAAVDADRR 584 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 +++ NH+ATH+LH AL +LG HV+Q GS + PD LRFD H P+T+ E+K +ED N Sbjct: 585 ARITRNHTATHILHAALRQVLGDHVNQAGSYVGPDRLRFDFAHFAPMTADEIKQVEDLAN 644 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 +I + + ++A ASG AL G KY D VRVV + G S LCGG HV Sbjct: 645 AVIMSATDMNIYETSLDEARASGVTALFGEKYGDTVRVV-----EAGGFSRELCGGCHVR 699 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +T EI LL +V+E+S+ A RRIEA+T A +L + +L + AS LK + +V RV Sbjct: 700 NTAEIGLLKVVAETSVAANTRRIEAVTSYAALDYLNTRAAELDAAASALKSAPLDVAARV 759 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVE-DLSCH--KIADVNFMSHII--SEVDSKELKSVMDA 815 ++ + A+R Q E D S + + DV + +I +D +++V D Sbjct: 760 AANLATIKEFE-AEARRAKQAAAESDASAYLDAMVDVGYPLIVIRVDGLDGGAMRNVWDV 818 Query: 816 LQKKI-QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 ++ ++ + G ++L ++ K + E + FNA D+ + ++ + GGGGG+P M Sbjct: 819 VRARMPKPGALVLGAVTDGKPIIMAAASDEAVAAGFNAKDVIKQASSHI-KGGGGGKPTM 877 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 AQ+GG + + D A+ +FL Sbjct: 878 AQAGGKDASGMDAALEAARAFL 899 >gi|86148968|ref|ZP_01067200.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597061|ref|ZP_01100297.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25] gi|218562159|ref|YP_002343938.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20532267|sp|Q9PI05|SYA_CAMJE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|85840326|gb|EAQ57583.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190750|gb|EAQ94723.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 84-25] gi|112359865|emb|CAL34653.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927005|gb|EFV06360.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 842 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 350/888 (39%), Positives = 512/888 (57%), Gaps = 64/888 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 Y+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N+ Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRRI Sbjct: 240 DSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIEN 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + E Sbjct: 360 GIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q++RA+A G G T + +L EK+G F+GY+ K C+ + L Sbjct: 417 QKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESKILAL 464 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 + V + G V+ + TPFYA +GGQ D+G + ++ Sbjct: 465 LDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508 Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D QK ++ + ++ G L+ + ID + R Q++ +HSATHLLHHAL ILGS Sbjct: 509 DTQK---FFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + + LRFD TH K + EL+SIE VN +I + + M E+A SG Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+RRI Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN 782 EA+ + A + Q E+L + LK +++ ++++ E L+ + K +L+ Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSSKTELD 737 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 +++ +I + +D+ ++K+++D + K +I+L+ + EK I + Sbjct: 738 SKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----ITL 784 Query: 843 TEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + D A L + +A++L GG GGGR A +GG + +K ++A+ Sbjct: 785 AAGVKDVPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831 >gi|154483551|ref|ZP_02025999.1| hypothetical protein EUBVEN_01255 [Eubacterium ventriosum ATCC 27560] gi|149735461|gb|EDM51347.1| hypothetical protein EUBVEN_01255 [Eubacterium ventriosum ATCC 27560] Length = 886 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 346/906 (38%), Positives = 525/906 (57%), Gaps = 48/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL+FF+ GH ++ S SL+P ND +L+ N+GM P K FTGQE P V T Sbjct: 13 LNELRKMFLDFFESKGHLVMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRTRVAT 72 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI +W+ LT+ L+ Sbjct: 73 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKREAIHWSWEFLTEVVGLEAD 128 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY ED+EAF +W K G+ A++I + DNFW GPCGPCSEI++D+G Sbjct: 129 RLYPSVYLEDDEAFDIWNKEMGIPAERIFKFGKEDNFWEHG-AGPCGPCSEIYYDRGAKY 187 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + E +RYIEIWN VF QFE L + +IDTGMGLER+ATV+Q+ Sbjct: 188 GCGKPGCTVGCECDRYIEIWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLATVVQDVD 247 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L ++ +Y E V+ R++ DH+RS++F+I+DGI+P+NEGRGY Sbjct: 248 SIFDVDTIKALRDKVCELANKEYKKEYKWDVSIRIVTDHIRSATFMISDGIMPSNEGRGY 307 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG + L + YPEL + K +I + L E+ +F Sbjct: 308 VLRRLIRRAARHGKLLGIDGRFLSTLSETVIESSKDGYPELEEKKSMIFKVLSEEENKFN 367 Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D GL +L + + K+ L+G+ AFKLYDT+G PLD+ ++IL +G G+D Sbjct: 368 KTIDTGLNILADMEEEMKKNNQTQLSGENAFKLYDTYGFPLDLTEEILEEKGF-GVDEDG 426 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F +A+E QR +AR+ + + +K T+F+GYD L Sbjct: 427 FKEAMEVQRKKARSARKKTNYMGADATVYEQLDKALTTKFVGYDKLISD----------- 475 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 ++V A+ + E+V+ V G K +V ++TPFY GGQ+GD G + + Sbjct: 476 ------------TVVTALTTEKEVVQALVDGDKGTIVTEETPFYGTMGGQVGDKGIIVTN 523 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G ++ + G H V +G+++ + +D R S NHSATHLL AL Sbjct: 524 GGEFKVEETIHLLGGKIGHVGTVVKGMIQVGDKATMKVDSAFRADTSKNHSATHLLQKAL 583 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LG HV Q GS + D LRFD TH + +T E++ +E+ VN+ IA L V+T+ M+ + Sbjct: 584 KTVLGEHVEQAGSYVDADRLRFDFTHFQAMTKEEIEKVENLVNEQIATGLDVITKEMSLD 643 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY ++VRVVS+ G +S LCGGTHVS+T I I+SES + Sbjct: 644 EAKETGAMALFGEKYGEKVRVVSM-----GDYSIELCGGTHVSNTNVISSFKIISESGVA 698 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T H + L A K +V +++ +++E ++L + K Sbjct: 699 AGVRRIEALTSTGLMKHYKESENVLNQAAKLAKSEPVALVEKIQALYDEIKELSKENEKL 758 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L E + ++ V ++ + V EL+++ D L++K+ G++++V ++ Sbjct: 759 KAKLANEAVGDVLSQVVEVKGVKLLATHVEGVGMNELRNLGDQLKEKMGGGVVVIVS-TQ 817 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + KA+V+++ ED + + +A ++ + AK++ GGGGGGRP+MAQ+GG N A A+ Sbjct: 818 DGKANVIVMADEDAISKGAHAGNMIKEIAKLV-GGGGGGRPNMAQAGGKNPAGAKDAVEA 876 Query: 892 VASFLK 897 + L+ Sbjct: 877 AKTILE 882 >gi|296333167|ref|ZP_06875620.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675327|ref|YP_003866999.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149365|gb|EFG90261.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413571|gb|ADM38690.1| alanyl-tRNA synthetase [Bacillus subtilis subsp. spizizenii str. W23] Length = 878 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 358/912 (39%), Positives = 530/912 (58%), Gaps = 62/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K DQ Sbjct: 67 QKAIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDQ 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +TV+ EDEEA++ W K G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTVHPEDEEAYEFWAKKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E +RY+E+WNLVF +F LPK +IDTGMGLERM +V Sbjct: 180 YGNDPEDPELYPGG--ENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294 +Q N+D DLF +I+A+E ++G Y +N+ + +VI DH+R+ +F ++DG LP+N Sbjct: 238 IQNVPTNFDTDLFVPIIKATETISGEIYGTDNVKDTAFKVIADHIRTVAFAVSDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ + P M L+P + M YPE+ + I + +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKTINIHRPFMYDLVPVVAEIMADFYPEVKEKSDFIAKVIKNE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +ERF +TL+ GL +L ++ KD+ +++G FKLYDT+G P+++ ++ + Sbjct: 358 EERFHETLNEGLAILSEMIKK-EKDKGSSVISGADVFKLYDTYGFPVELTEEYAEDENMT 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + + +QR RAR +GS + +L++ + F+GY K Sbjct: 417 -VDHKGFEEEMNQQRERARNARQDVGSMQVQG--GALRDVTDESTFVGYSQ------TKA 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 D V+ ++Q G+ ++EA G+ V+++ D+TPFYAE+GGQ+GD Sbjct: 468 DANVIV-----------------LLQDGQFIDEAHEGESVQIILDETPFYAESGGQIGDK 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++I DVQK G VH +VE G ++ + + ++ R + NH+ATH Sbjct: 511 GYLRSEQAIVRIKDVQKAPNGQHVHEGVVESGTVQKGLHVTAEVEDHMRSSVIKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I ++PV Sbjct: 571 LLHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELEQIERIVNEKIWASIPVSI 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L IV Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GGYSLELCGGCHVRNTAEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I AG RRIEA+TGQ A + Q LK A LK + V RV + E ++ Q Sbjct: 686 SESGIGAGTRRIEAVTGQGAYVEMNSQISVLKQAADELKTNIKEVPKRVAALQAELKEAQ 745 Query: 772 LIHAKRKLQL-NVED---LSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +L NVE LS K D V ++ ++ D L++++D L+ K+ S +I+ Sbjct: 746 RENDTLLAKLGNVEAGAILSKVKEVDGVRVLAEKVNAKDMNHLRTMVDELKAKLGSAVIV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G + K ++ VT+DL+++ +A L + +A+V GGGGGGRP MAQ+GG K Sbjct: 806 L-GAVQNDKVNISAGVTKDLIEKGLHAGKLVKQAAEVC-GGGGGGRPDMAQAGGKQPEKL 863 Query: 886 DQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 EEALASVEDWVK 875 >gi|217077683|ref|YP_002335401.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B] gi|217037538|gb|ACJ76060.1| alanyl-tRNA synthetase [Thermosipho africanus TCF52B] Length = 859 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 357/901 (39%), Positives = 537/901 (59%), Gaps = 55/901 (6%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 IR FLEFF+K GH++LPS+SLIP DP L+FT +GMVPFK IF G+ PVY + T Q Sbjct: 5 EIRRLFLEFFEKKGHKILPSASLIP-EDPQLLFTIAGMVPFKPIFWGKVDPVYTRIATCQ 63 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KCVR D++NVG+T RHHTFFEMLGNFSFG YFKE AI+ AW+ +T+ + + RL Sbjct: 64 KCVRT----TDIENVGKTPRHHTFFEMLGNFSFGDYFKEEAIEWAWEFVTQVLKIPEERL 119 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIP 184 +I+VY +D EA+++W+KI G+ + KI+++ DNFW A TGPCGP +EIF+D +P Sbjct: 120 WISVYKDDNEAYEIWRKI-GVPSSKILKLGKEDNFWGPAGPTGPCGPDTEIFYDTQRDVP 178 Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + R++EIWNLVF +F Q L + +IDTG GLER+A ++Q Sbjct: 179 TSDGKEPTPANTEGRFVEIWNLVFTEFYQDENGNLLPLKRKNIDTGAGLERVAAMMQGVY 238 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NN+D DLF +I+ + ++Y+ + V+ RVI DH+R+ FLI+DG+ P+NEGRGY Sbjct: 239 NNFDTDLFAPIIEGICNILNVEYKKDEKIDVSIRVIADHIRALVFLISDGVFPSNEGRGY 298 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA + +LLG P + L+ + +MG+ YPE+++ K +E + E++RF Sbjct: 299 VLRRILRRAARHGKLLGANAPFLHKLVDFVVNKMGNVYPEIVEKKEFTKEIILGEEKRFL 358 Query: 360 KTLDRGLVLLDGVL-SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 + L++GL L++ V+ + GK ++G++AFKLYDT+G PLDI++D+ G +D F Sbjct: 359 QNLNKGLELVEKVVRENNGK---ISGEMAFKLYDTYGFPLDILRDLAEENGYV-LDEQGF 414 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 N+ +E+QR A++ + G T + LK K ++F+GY+ +E KVL Sbjct: 415 NEYMEKQRLLAKSAA-GDVEFTKRTGYEDLKLK---SEFVGYEK------YEEYSKVLA- 463 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ E V EA E+V ++TPFYAE GGQ+ DTG G+ Sbjct: 464 -----------------IKVSEFVNEAQDAD-CEIVLERTPFYAEKGGQVSDTGIIKGEN 505 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + V EGI VH + +G L + ID + R+ + NH+ATHLLH AL Sbjct: 506 GEFLVEYVYSPTEGIIVHRGKL-KGRLSVGEKVYAKIDIEKRKATARNHTATHLLHAALR 564 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG+HV Q GS + + LRFD TH ++ E++ +E VN++I + + V+ + ++ Sbjct: 565 KVLGTHVRQAGSLVESEKLRFDFTHFNALSVDEIEQVEKMVNNVILEAIDVIVEEKDYDE 624 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA AL KY D+VRVV V G S LCGGTHV +TGEI L IVSE S+ A Sbjct: 625 AVKEGAMALFEEKYGDKVRVVKV-----GNFSEELCGGTHVKNTGEIGLFKIVSEGSVSA 679 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKR 777 GIRR+EAITG + +L + + L+V+ V R+E + EE +KL I + + Sbjct: 680 GIRRVEAITGLNSLMYLQRLENNWLKVRKVLEVNDEEVFRRIENMKEEIKKLNSEIKSLK 739 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 + ++++ + +K +N + +I+ + + E+ + D + + G+ ++V K + Sbjct: 740 QKMVDIDSIYKNKKV-INNVEYIVEKFEGLEVDVLRDLADRLVDKGVDLVVLFDKVGEKV 798 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 +LIV + +A ++A+ +KVL GGGGGGRP AQ+GG + K +AI + L+ Sbjct: 799 ILIVKKKKSNQLLHAGNIAKELSKVL-GGGGGGRPDFAQAGGKDFGKVQEAIKKLEEILR 857 Query: 898 K 898 + Sbjct: 858 E 858 >gi|329943212|ref|ZP_08291986.1| alanyl-tRNA synthetase [Chlamydophila psittaci Cal10] gi|313848364|emb|CBY17368.1| putative alanyl-tRNA synthetase [Chlamydophila psittaci RD1] gi|325507370|gb|ADZ19008.1| alanyl-tRNA synthetase [Chlamydophila psittaci 6BC] gi|328814759|gb|EGF84749.1| alanyl-tRNA synthetase [Chlamydophila psittaci Cal10] gi|328915050|gb|AEB55883.1| alanyl-tRNA synthetase [Chlamydophila psittaci 6BC] Length = 875 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 333/878 (37%), Positives = 501/878 (57%), Gaps = 50/878 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H ++ SS + P NDP+++FTN+GM FK+IF +E Y TT Sbjct: 4 NTLRSNFLKFYANRHHTIVSSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI AW++ F+ D R Sbjct: 64 QKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNFDPDR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW++ L +++I R+T DNFWSMAETGPCG CSE+ FD+GE Sbjct: 124 IYATVHEKDDEAFALWER--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGEQFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P EGER++E WNLVFM+F + + LP +DTG GLER+ +++ Sbjct: 182 KAASPLEDSEGERFLEYWNLVFMEFNRSAEGSLLALPNKHVDTGAGLERLVSIISGTDTV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ + LI +E+++G KY + + RVI DH+RS SF IADG++P N RGYVL Sbjct: 242 FEADVLRLLISKTEELSGKKYHPDEALGAAFRVIADHVRSLSFAIADGLIPGNTERGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RR++ Y + LG+T+P + ++PAL MG AYPEL + I+E + E+E + K+ Sbjct: 302 RKILRRSVNYGKRLGFTKPFLAEIVPALVDAMGEAYPELRLSASQIQEVMTIEEENYFKS 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL I++G+ AFKL DT+GLPLD + +L +D+ +F Q Sbjct: 362 LHRGGNLLQQVLKSSSSSSIISGEDAFKLKDTYGLPLDEIA-LLAKDYDFSVDLDTFYQL 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +E + R+R ++ TT+ ++ SL +T F+GY+ L F Sbjct: 421 EKEAKERSRK-NIAKSHNTTDTVYDSLSLGENST-FVGYNDLSCDTF------------- 465 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDG 538 ++AI++ GE V +K ++ +TPFYAE GGQ+GD+G C+ G Sbjct: 466 ----------IEAIIKDGEQVPYLKEKEKGILILKETPFYAEKGGQVGDSGEIFCSDGTF 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++ GI +HH V +G L ++ + R+ +S NH+ HLLH AL Sbjct: 516 V---VSHTTSPKAGIVIHHGEVSQGQLCPAQAVTAQVHCLRRKNISNNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH K I +L SIE VN+ I +N V TR + D Sbjct: 573 MTLGDHIRQAGSFVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREASYSD 632 Query: 659 AIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + S G KY+D VRVVS + S LCGGTH TG++ I+ E ++ Sbjct: 633 VMNSKEIKQFFGDKYSDIVRVVSAGF------SHELCGGTHAEFTGDLGCFRILKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-KLQLIH-A 775 GIRRIEA+TG+ A + L +A L+ + ++ +++ I +E + + +LI Sbjct: 687 TGIRRIEAVTGKEAEVLARQDTQDLNEIALILQSPRDQILNKLQNILDEKKEQTKLISDL 746 Query: 776 KRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + KL ++ D C ++ DV++ H + E +S L+ + L +KI + ++ L K Sbjct: 747 ENKLIYSLLDKVIDRCQQVEDVSYFIHHLPESESHRLQQYANCLHQKIPARLVSLWTTQK 806 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 K + +++DL+ + A DL ++ GG GG Sbjct: 807 NGKYIIFSRISDDLVKQGLQAKDLLKILLTPCGGRWGG 844 >gi|260654150|ref|ZP_05859640.1| alanine--tRNA ligase [Jonquetella anthropi E3_33 E1] gi|260631135|gb|EEX49329.1| alanine--tRNA ligase [Jonquetella anthropi E3_33 E1] Length = 879 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 359/902 (39%), Positives = 516/902 (57%), Gaps = 61/902 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F++F+ G PS SL+P +DP+L+FT +GMVPFK + G E+P ++ T QK Sbjct: 6 IRRKFIDFWVSKGAHHFPSFSLVP-DDPSLLFTIAGMVPFKKYYLGLEEPPVKSAVTSQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR ND++NVG T RHHTFFEMLGNFS+GGYFK ++ W+ LT+ LD R+Y Sbjct: 65 CVRT----NDIENVGHTARHHTFFEMLGNFSWGGYFKHESLTWGWEFLTQVIGLDGSRMY 120 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CI 183 T+Y +DEEA+K+W GL+ D I+R +NFW M GPCGP SEI +DQGE C Sbjct: 121 ATIYKDDEEAYKVWHDEIGLADDHILRCGEEENFWFMGPQGPCGPDSEILYDQGEKFSCG 180 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P PG + +RY+EIWN VF QF++Q LP+ +IDTGMGLER+ +++Q TN+ Sbjct: 181 PNCHPGC--DCDRYLEIWNHVFTQFDRQEDGSMLPLPRKNIDTGMGLERLTSLVQGVTND 238 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYV 300 ++ DLF LI+ ++G+ Y G++ +VI DH+RS F++ADGILP+NEG GYV Sbjct: 239 FETDLFLPLIRKVTDLSGVAY-GSSAAGDLALKVISDHIRSVCFMLADGILPSNEGPGYV 297 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA+ Y RL+G P + LLP + +EM Y EL +++L I + + E+ RFG+ Sbjct: 298 LRRLLRRAVRYGRLIGIDRPFLNDLLPVVVSEMSDPYAELAESQLTIRQIIDVEENRFGR 357 Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL +G LL+ + K + L GDVAF+LYDT+G PL++ +I + L +D F Sbjct: 358 TLSQGCALLNDEIDRAVKAGSKTLAGDVAFQLYDTYGFPLELTTEICSEKNLT-VDESEF 416 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + +Q+ RAR S +G T + +L+ + G F+GYD L S Sbjct: 417 KAQMTQQKDRARKASKQVGVVITGDAFTALQNRLGTVPFVGYDALSSS------------ 464 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S + +V G +V+ +GQ + V TPFYAE GGQ+GDTG Sbjct: 465 -----------SQIVGLVCDGALVDRLETGQSGQAVVTPTPFYAERGGQVGDTGTLTAVR 513 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 +T +A + V V G L T+ + ++D + R ++ NH+ATHLLH AL Sbjct: 514 TEAAVTGCFYRAGDLSVLDITVNSGALETDQFVTASVDKERRAAITRNHTATHLLHQALI 573 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV QNGS ++P+ LRFD TH + +T +++ +E N + N+PV T MN D Sbjct: 574 DVLGGHVRQNGSLVSPEFLRFDYTHFEAMTPEQIRQVETLANRKVLANMPVDTEQMNLAD 633 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GA AL KY D VRVVS G S LCGGTHV +TGEI L+ IVSE SI + Sbjct: 634 AKAKGAKALFEEKYGDVVRVVSA-----GDFSCELCGGTHVGATGEIGLVKIVSEESIGS 688 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RR+ A+TG + L++LA V VV +V + +E ++L R+ Sbjct: 689 GVRRLTAVTGMNSYDMFDKASSALRTLAQKFNVRPEGVVEQVVALEQENKEL-----ARQ 743 Query: 779 LQLNVE-DLSCH--------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L V+ DL+ ++ S I V ++ D ++ K +++ +G Sbjct: 744 LADKVKSDLAGRLDGGIARTELDGCCLCSARIDGVPMDMMREAGDRVKDKEPRSVVVFMG 803 Query: 830 ISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++E K +L +V E L ++A + + A ++ GGGGGGRP MAQ+GG + K DQA Sbjct: 804 QTEEGKVQILCMVGAEALKAGYHAGKIVKALAGLV-GGGGGGRPDMAQAGGRDCAKIDQA 862 Query: 889 IA 890 +A Sbjct: 863 LA 864 >gi|157414790|ref|YP_001482046.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116] gi|205830015|sp|A8FKT2|SYA_CAMJ8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157385754|gb|ABV52069.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81116] gi|307747428|gb|ADN90698.1| Alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni M1] gi|315931702|gb|EFV10657.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 327] Length = 842 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 354/893 (39%), Positives = 517/893 (57%), Gaps = 74/893 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEFLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 Y+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQGE Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175 Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 SSE+ G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K Sbjct: 176 EHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGK 235 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +N+D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYV Sbjct: 236 FSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYV 295 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF Sbjct: 296 LRRILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLS 355 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 T++ G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F Sbjct: 356 TIENGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFEL 412 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQ++RA+A G G T + +L EK+G F+GY+ K C+ Sbjct: 413 LMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESK 460 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + L + V + G V+ TPFYA +GGQ D+G + Sbjct: 461 ILALLDEDFKEVSTLKDAG------------WVMLKNTPFYATSGGQSADSGFM----AK 504 Query: 541 LQITDVQKKAEGIF-VHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 ++ D QK F ++ + V+ G L+ + ID + R Q++ +HSATHLLHHAL Sbjct: 505 REVLDTQK----FFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALR 560 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ILGSHVSQ GS + + LRFD TH K ++ EL++IE VN++I + + M E+ Sbjct: 561 EILGSHVSQAGSLVESNKLRFDFTHHKALSKEELENIEKRVNEMIINSSEAILENMPLEE 620 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + A Sbjct: 621 AKKSGAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSA 674 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKR 777 G+RRIEA+ + A + Q E+L + LK +++ ++++ E L+ + Sbjct: 675 GVRRIEAVVSKAALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSS 732 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 K +L+ +++ +I + +D+ ++K+++D + K +I+L+ + EK Sbjct: 733 KTELDSKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK--- 781 Query: 838 VLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I + + D A L + +A++L GG GGGR A +GG + +K ++A+ Sbjct: 782 --ITLAAGVKDVPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831 >gi|19704032|ref|NP_603594.1| alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|22096188|sp|Q8RFJ8|SYA_FUSNN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|19714224|gb|AAL94893.1| Alanyl-tRNA synthetase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 867 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 344/909 (37%), Positives = 529/909 (58%), Gaps = 66/909 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIREKFIEFFMQKQHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ +++ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGNYFKKEAIKWSWEFVTEVLKINKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+WS TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWIEECNFPKERIVRMGESENWWSAGPTGSCGPCSEIHVDLG-IQY 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A V+Q K Sbjct: 179 GGDENSKIGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAVVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 TNN++ DL +++ + ++TG +Y N N +VI DH R+ +FL+ DG++P+NEGRG Sbjct: 239 TNNFETDLLFPILEEAGKITGSQYGKNPETNFSLKVITDHARAVTFLVNDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLGY + M ++ + + AYP+L + I + ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGYKDLFMYKMVDKVVEKFEIAYPDLRKNVENIRKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + +L GK++ L+G+++FKLYDT+G P ++ ++I RG+ + Sbjct: 359 SNTLDQGIQLVNQEIDNLLTNGKNK-LDGEISFKLYDTYGFPYELTEEIAEERGVIVLR- 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +KYG T+F GY+ +++ K+ Sbjct: 417 EEFEAKMEEQKEKARSAREVVMEKGQDSFIEEFYDKYGVTEFTGYEK------TEDEGKL 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + D +K ++FD+TPFYAE+GGQ+GD G Sbjct: 471 LSLREAKD-------------------------RKYLLIFDKTPFYAESGGQVGDQGKIY 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D ++ DVQK+ + IF+H +E+G+ + L +D R + NH+ATHLLH Sbjct: 506 SDNFAGKVLDVQKQKD-IFIHTVKLEKGMPEENKTYKLEVDVVKRLDTAKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL I+G+HV Q GS + + LRFD +H + +T +L IED VN I + + VV + Sbjct: 565 ALREIVGTHVQQAGSLVDSEKLRFDFSHYEALTEEQLSKIEDIVNKKIREGIEVVVSHHS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY D VRVV V S+ LCGGTH+ + G+I L I SE Sbjct: 625 IEEAKKLGAMMLFGDKYGDVVRVVDVHG-----FSTELCGGTHIDNIGKIGLFKITSEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEY----RK 769 I AG+RRIEA TG A +L+ ++E LK++ LK + N+V +VE+ E ++ Sbjct: 680 IAAGVRRIEAKTGYGA--YLVEKEEADILKNIEQKLKATNSNLVEKVEKNLETLKDTEKE 737 Query: 770 LQLIHAKRKLQLNVEDLS-CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L+++ K L +S +I V + + +++L++++D ++ + II+L Sbjct: 738 LEILKQKLALFETKAAISGMEEIGGVKVLIAAFKDKSTEDLRTMIDTIKDNNEKAIIVLA 797 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 S + K + + VT+ L D+ A DL + A++ GG GGGRP AQ+GG + K A Sbjct: 798 --STQDKLAFAVGVTKTLTDKIKAGDLVKKLAEIT-GGKGGGRPDFAQAGGKDEGKLLDA 854 Query: 889 IAGVASFLK 897 V ++ Sbjct: 855 FKEVREIIE 863 >gi|256752916|ref|ZP_05493749.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1] gi|256748196|gb|EEU61267.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus CCSD1] Length = 757 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 326/767 (42%), Positives = 471/767 (61%), Gaps = 45/767 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL FF+ GH LPS SLIP ND +L+ NSGM P K FTG+E P + VTT Sbjct: 6 MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R D++ VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L Sbjct: 66 CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEVLGLPVN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y+ED+EAF++W KI GL ++I+R+ DNFW + TGPCGP SEI+FD+GE Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R+IE WNLVF QF + + LP +IDTGMGLER+AT++Q Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDEQGNYHRLPNPNIDTGMGLERIATIMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D+ + + Q+ ++Y + V+ RVI DH+R +F+I+DGILP+NEGRGY Sbjct: 241 SIFDVDVIRGITNFVSQIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG + + ++ ++ G AYPE+I K I+ ++ E+ERF Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYRVVDSVVENYGEAYPEIIDRKDYIKRIVKLEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D+GL +L ++ L GK +L G AFKLYDT+G PLD+ ++IL G+ +D Sbjct: 361 ETIDQGLTILQDYINELKVQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEE 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + + LE+QR RAR+ S + I+ +L + T+F+GYD Sbjct: 419 GYTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYD--------------- 461 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 T +S V AIV+ E+VEEA +G V ++ D TPFYAE+GGQ+GD G Sbjct: 462 --------TYESNSKVLAIVKDEELVEEAEAGDDVSIILDVTPFYAESGGQIGDNGILEN 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + +++ D +K + F+H +ERG++ + ID +RR + NH+ATHLLH A Sbjct: 514 ENVLIKVKDCKKVGDR-FIHIGTIERGLISVRDEVKAQIDVVSRRNAARNHTATHLLHKA 572 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG HV Q GS + D LRFD +H + +T ELK IE+ VN+ I Q+L V Sbjct: 573 LKEILGDHVHQAGSLVADDRLRFDFSHYQAVTKEELKQIENRVNEKIYQSLNVHIEEKTY 632 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A+ GA AL KY D+VRVV ++ +S LCGGTHV +T EI + IVSES++ Sbjct: 633 DEAVKEGAVALFTEKYGDKVRVVKID-----DYSMELCGGTHVKNTNEIGIFKIVSESAV 687 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 AG+RRIEA+TG A +L ++E LK + LK +V ++E + Sbjct: 688 GAGLRRIEALTGLAAIKYLEEKEEILKEASDLLKAQDKEIVSKIESL 734 >gi|291522221|emb|CBK80514.1| alanyl-tRNA synthetase [Coprococcus catus GD/7] Length = 880 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 358/913 (39%), Positives = 526/913 (57%), Gaps = 58/913 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++ +R FLEFF+ GH + S SLIP ND +L+ NSGM P K FTG E P + VT Sbjct: 6 SLNELRKMFLEFFESKGHLAMKSFSLIPHNDNSLLLINSGMAPLKPYFTGAEIPPRRRVT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R G DL+NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD Sbjct: 66 TCQKCIRTG----DLENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTQVVGLDP 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY ++Y +D+EAF +W K G++ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 DRLYPSIYQDDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEK 180 Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G PG + + +RY+E+WN VF QF L + +IDTGMGLER+A V+Q+ Sbjct: 181 YGCGKPGCTVGCDCDRYMEVWNNVFSQFNNDGHNHYTDLIQKNIDTGMGLERLAVVVQDV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +D+D + L + G+KY + V+ R+I DH+RS++F+I+DGI+P+NEGRG Sbjct: 241 DSIFDVDTIQALRNKVCDLAGVKYLEKHETDVSIRIITDHIRSATFMISDGIMPSNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + L + YPEL + K I L E+++F Sbjct: 301 YVLRRLIRRAARHGRLLGIEGKFLAKLSATVIETSKDGYPELEEKKEFIFNVLTQEEDKF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 KT+D+GL +L+ + L ++ +L+G AFKLYDT+G P+D+ ++IL +G ID Sbjct: 361 NKTIDQGLSILNEMEEKLSAEDKKVLDGADAFKLYDTYGFPMDLTKEILEEKGY-DIDEE 419 Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 F ++EQR +AR ++ +G + ++I S+ + F+GY+ Sbjct: 420 GFTVCMQEQRQKARDARKVSNYMGKDATVYDEIDPSV-----TSVFVGYE---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 K C+ P + + + E+ + GQ + +TPFYA +GGQ+ DT Sbjct: 465 --KTECESP-----------ITVLTTETELTDALTDGQTGTIFTQETPFYATSGGQMADT 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G ++ DV K G H +V G+ + + L I+ + R + NHSATH Sbjct: 512 GVITGPEGTFEVKDVVKLLGGKIGHIGVVTSGMFKKGDVVKLAINKEKRSDTAKNHSATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LGSHV Q GS D LRFD TH +T EL +ED VN+ IA+ LPV+T Sbjct: 572 LLQKALRIVLGSHVEQAGSFNNQDKLRFDFTHFSALTQEELDRVEDIVNEEIAKGLPVLT 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 ++MN EDA +GA AL G KY+D VRVVS+ G S LCGGTH +T I I+ Sbjct: 632 KVMNIEDAKKTGAMALFGEKYSDDVRVVSM-----GDFSKELCGGTHTDNTASIAAFKII 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ + AG+RRIEA+TG + ++KL A K +V R+E + EE + L Sbjct: 687 SETGVAAGVRRIEALTGNGVFKYYKEVEKKLHEAAKTAKCDPAQLVKRIEGLHEEIKTLT 746 Query: 772 LIHAKRKLQLNVEDLS--CHKIADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIM 826 + + K ++ + + +++ DVN +S + + ++D +EL ++ D L+ K+ G+I+ Sbjct: 747 AENNQLKNKMAKDAMGDVMNQVKDVNGVSFLPVHVKDIDMQELMNLGDQLKAKLGDGVIL 806 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L K S+L + T+ + + +A +L + AK++ GGGGGGRP+MAQ+GG N Sbjct: 807 LAS-ENGGKVSLLAMATDGAMKKGAHAGNLIKAVAKLV-GGGGGGRPNMAQAGGKNPAGI 864 Query: 886 DQAIAGVASFLKK 898 +QA+ A L K Sbjct: 865 NQALEAGAEELAK 877 >gi|330684847|gb|EGG96537.1| alanine--tRNA ligase [Staphylococcus epidermidis VCU121] Length = 876 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 348/924 (37%), Positives = 518/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK AI+ AW+ LT E ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKNEAIEFAWEFLTSEKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T++ ED EA+K+W + GL +IIRI NFW + E GP GP +EIF+D+G Sbjct: 123 EKLYVTIHPEDVEAYKIWNEKIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGAD 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 FGKDDPEEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I EQV+G Y N V +VI DH+R+ SF IADG Sbjct: 234 MTSISQNVRTNYETDLFMPIINEVEQVSGKTYLQNIDQDVAFKVIADHIRTISFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVAEIMEPYYPNVKEKSEFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+G +S G EI NG AFKLYDT+G P+++ +++ Sbjct: 354 IKSEEERFHETLEEGLAILNGFISQAKEGNQEI-NGKDAFKLYDTYGFPIELTEELATQE 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK + F+GY+ Sbjct: 413 GLT-VDMTTFEAEMQQQRDRARQARQNSQSMQVQSEV-------LKNITTESHFVGYN-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++Q GE V++A +G+ + + TPFYA Sbjct: 463 ---------------------TTDYQTELIHLIQNGEEVDKADTGETIYFMLKDTPFYAV 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ D G D + +T+V K G +H ++ G + + +++ RR + Sbjct: 502 SGGQVADKGTVSNDHFEIAVTEVTKAPNGQNLHKGTIQFGQVTKGAEVDASVNKDERRSI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG HV+Q GS + P+ LRFD +H +T E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKEVLGDHVNQAGSLVEPNRLRFDFSHFGQMTQDEINQVERRVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + MN ++A A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 622 WRGIDVRIQEMNIDEAKAMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVENTA 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L E+ + +KV + VV ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEHIQEQFNLVKDLVKVKTDDQVVDKITQ 736 Query: 763 IWEEYRKL--QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 I +E + L QL +++ N+E+ ++ +N + + +EVD +K ++S M Sbjct: 737 IQDEEKSLIKQLEQRDKEITSLKMGNIEE----QVETINGLKVLATEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q +I+L + + K S++ V +D D+ A D+ + A ++ GG GGGRP Sbjct: 793 DDFKSKLQDTVIILAS-NVDGKVSIIATVPKDQTDKIKAGDIIKNMAPIV-GGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG +++ + ++K Sbjct: 851 MAQGGGTQPENITESLRFIKDYIK 874 >gi|86153544|ref|ZP_01071748.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843270|gb|EAQ60481.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni HB93-13] Length = 842 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 354/892 (39%), Positives = 516/892 (57%), Gaps = 72/892 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF GHE+ PSS L+P +D TL+F N+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IRKAYLDFFASKGHEITPSSPLVP-DDATLLFANAGMVPFKSIFTGEIPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 Y+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQGE Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175 Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 SSE+ G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K Sbjct: 176 EHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGK 235 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +N+D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYV Sbjct: 236 FSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYV 295 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF Sbjct: 296 LRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLS 355 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 T++ G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F Sbjct: 356 TIENGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFEL 412 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQ++RA+A G G T + +L EK+G F+GY+ K C+ Sbjct: 413 LMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESK 460 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + L + V + G V+ + TPFYA +GGQ D+G + Sbjct: 461 ILALLDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AK 504 Query: 541 LQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK ++ + V+ G L+ + ID + R Q++ +HSATHLLHHAL Sbjct: 505 REVLDTQK---FFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALRE 561 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSHVSQ GS + + LRFD TH K ++ EL+SIE VN++I + + M E+A Sbjct: 562 ILGSHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEA 621 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG Sbjct: 622 KKSGAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAG 675 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRK 778 +RRIEA+ + A + Q E+L + LK +++ V+++ E L+ + K Sbjct: 676 VRRIEAVVSKAALEFVKNQLEELSKVKDELK--NNDILNGVKKLKNEILSLKNELKNSSK 733 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 +L+ +++ +I + +D+ ++K+++D + K +I+L+ + EK Sbjct: 734 TELDSKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK---- 781 Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I + + D A L + +A++L GG GGGR A +GG + +K ++A+ Sbjct: 782 -ITLAAGVKDAPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831 >gi|57238291|ref|YP_178628.1| alanyl-tRNA synthetase [Campylobacter jejuni RM1221] gi|148925880|ref|ZP_01809567.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486] gi|73621968|sp|Q5HVQ7|SYA_CAMJR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|57167095|gb|AAW35874.1| alanyl-tRNA synthetase [Campylobacter jejuni RM1221] gi|145844866|gb|EDK21970.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8486] gi|315057927|gb|ADT72256.1| Alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni S3] Length = 842 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 350/888 (39%), Positives = 512/888 (57%), Gaps = 64/888 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 Y+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N+ Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRRI Sbjct: 240 DSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIEN 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + E Sbjct: 360 GIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q++RA+A G G T + +L EK+G F+GY+ K C+ + L Sbjct: 417 QKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESKILAL 464 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 + V + G V+ + TPFYA +GGQ D+G + ++ Sbjct: 465 LDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508 Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D QK ++ + ++ G L+ + ID + R Q++ +HSATHLLHHAL ILGS Sbjct: 509 DTQK---FFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + + LRFD TH K + EL+SIE VN +I + + M E+A SG Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+RRI Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN 782 EA+ + A + Q E+L + LK +++ ++++ E L+ + K +L+ Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSSKTELD 737 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 +++ +I + +D+ ++K+++D + K +I+L+ + EK I + Sbjct: 738 SKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----ITL 784 Query: 843 TEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + D A L + +A++L GG GGGR A +GG + +K ++A+ Sbjct: 785 AAGVKDVPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831 >gi|210622569|ref|ZP_03293251.1| hypothetical protein CLOHIR_01199 [Clostridium hiranonis DSM 13275] gi|210154152|gb|EEA85158.1| hypothetical protein CLOHIR_01199 [Clostridium hiranonis DSM 13275] Length = 911 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 346/901 (38%), Positives = 537/901 (59%), Gaps = 55/901 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR+ FLEFF+ H + S L+P ND +L+ N+GM P KN F+G E P + T Sbjct: 39 LNEIRSKFLEFFKTKDHYVGASYPLVPNNDKSLLLINAGMAPLKNYFSGVEVPPKNRMAT 98 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG T RH TFFEMLGNFSFG YFK ++ W+ TK ++ + Sbjct: 99 CQKCIRTG----DIENVGVTARHATFFEMLGNFSFGDYFKRESLAWGWEFATKWLNIPEE 154 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181 ++++TVY++D+EAF +W K G ++I+R+ +DNFW + GPCGPCSEI+FD+GE Sbjct: 155 KIWVTVYEKDDEAFDIWSKEMGFPEERIVRLGKDDNFWEIG-LGPCGPCSEIYFDRGEEY 213 Query: 182 -C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 C P PG + +R++E WN VF QF ++ L +IDTGMGLER+A ++Q Sbjct: 214 GCDSPDCKPGC--DCDRFLEFWNHVFTQFSKEEDGSYSELENKNIDTGMGLERIACIMQG 271 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEG 296 N +++D +++A +V G++Y G + N R+I DH+R+ SFLIADG+LP+NEG Sbjct: 272 VDNIFEVDTIHSVLEAVSKVAGVEY-GKDKANDKSIRIITDHIRAVSFLIADGVLPSNEG 330 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGY+LRR++RRA + +LLG + L+ + G AYPEL++ + I++ ++ E+E Sbjct: 331 RGYILRRLLRRAARHGKLLGIKGTFLNGLVDEVIKVSGDAYPELVEKEDYIKKVIKIEEE 390 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F +T+D+G+ +L+ L K+ +L+G++AFKLYDT+G PLD+ +IL GL+ ++ Sbjct: 391 KFNETIDQGMEMLNSYKEELKKEGKTVLSGEIAFKLYDTYGFPLDLTVEILREEGLS-VN 449 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F++ +E+Q+ RAR + G G + K KE+ ++F+GY L G + K Sbjct: 450 EEEFSEEMEKQKERART-ARGNMDGESWKEDPLAKEENVESEFVGYVELTG------EGK 502 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 VL AIV+ EIVE A G+ V VV D+T FY E GGQ GD G Sbjct: 503 VL-----------------AIVEDSEIVESASEGKDVVVVLDKTNFYPEGGGQAGDCGVL 545 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D + + + +K G H V G L+ L +D +NR S NH+ATHLLH Sbjct: 546 KNDNCAVAVKNTKKGPAGSIKHFGTVVAGELKAGDVLTCEVDRENRMACSRNHTATHLLH 605 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG H +Q GS +T D LRFD TH + +T ELK+IE+ VN+ I VV M Sbjct: 606 KALKEVLGDHANQAGSLVTADRLRFDFTHFEAVTKEELKTIEEKVNNAIFNAYDVVAETM 665 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A A GAAAL G KY + VRVVS+ G +S LCGG H+S+T + + I+SE Sbjct: 666 DINAAKAKGAAALFGEKYGNEVRVVSM-----GDYSMELCGGAHISNTAQAGMFKIISEG 720 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+TG+ ++ +DE + + + +K + ++ RVE + EE + L +L Sbjct: 721 GVAAGVRRIEAVTGKAVYEYMNKKDELIAKVCATIKAKEDGLLHRVENVLEENKNLEKEL 780 Query: 773 IHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + K ++ + D + ++ V+ +++ +D L+ D L+ K++SG+++L Sbjct: 781 HNLKTQISMQSADSALDSKVEVKGVSLVTNKYENMDMNTLRDTADNLRDKMESGVVVLAN 840 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K + ++ T+D++++ ++ ++ R AK+ GG GGGRP+MAQ+G K D+A Sbjct: 841 VA-DGKVNFVVTATKDVIEKGVHSGNIVREVAKI-AGGKGGGRPNMAQAGATEPAKVDEA 898 Query: 889 I 889 + Sbjct: 899 L 899 >gi|329770463|ref|ZP_08261842.1| alanyl-tRNA synthetase [Gemella sanguinis M325] gi|328836318|gb|EGF85984.1| alanyl-tRNA synthetase [Gemella sanguinis M325] Length = 873 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 342/911 (37%), Positives = 525/911 (57%), Gaps = 77/911 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF + GH++ PS+SL+P +DPTL++ NSG+ K F G+ P +T Sbjct: 7 TEIRRMFLDFFVEKGHKIEPSASLVPVDDPTLLWINSGVATLKKYFDGRVIPENPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK A+ AW+ LT E L++ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKPEAVAWAWEFLTSEKWLGLEK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 +L +T++ ED EA+ +W GL ++IIRI N FW + E GP GP +EIF+D+GE Sbjct: 123 EKLSVTIHPEDTEAYDIWHNQIGLPEERIIRIEGN--FWDIGE-GPSGPNTEIFYDRGEE 179 Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WN+VF Q+ LP +IDTGMGLER Sbjct: 180 TDTKSPKEEMYPGG------ENERYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGI 290 +A+VLQ+ N+D DLF +I E+++G KY NN + +VI DH+R+ F IADG Sbjct: 234 IASVLQDVPTNFDTDLFMPIINEIEKLSGKKYGVNNEKDEAFKVIADHIRTVVFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ YA++L M L + M YP + ++ +++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRYAKVLELNNSFMYKLTDVVAEIMNDYYPNVKESADFVKDV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E++RF +TL+ G +L+G++S + KD +I++G AFKLYDT G P+++ ++ Sbjct: 354 ILKEEDRFHETLNEGEAILNGIVSEV-KDTTKIISGKDAFKLYDTFGFPIELTEEYAEEY 412 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +DI FN+ +E+Q+ RAR+ S + +S G ++FIGY Sbjct: 413 GLK-VDIDGFNEEMEKQKERARSSRQDDSSMQVQSDLYS--RIIGNSEFIGYTQFE---- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV-EVVFDQTPFYAEAGGQ 527 VSS + AIV + + + + S ++V +VVF++TPFYAE+GGQ Sbjct: 466 -------------------VSSKLLAIVDKEDNLLDKYSDEEVVKVVFEKTPFYAESGGQ 506 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR--TEMSLVLTIDYQNRRQLSI 585 + D G + +G + ++ DV+K + +H V G + E L+++ D+ R + Sbjct: 507 IADHGEILANGFKAKVLDVKKLPDKRHIHFVKVLEGEFKVGNEYELIVSRDF--RLNVEK 564 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL+ AL +GSH+ Q GS +T + LRFD+TH P+T E++ +E VN I Sbjct: 565 NHTATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWN 624 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 L + T M +A GA AL G KY D VRVVS+ G +S LCGGTH S++ E+ Sbjct: 625 ALEIKTEEMPIAEARKLGAQALFGEKYGDIVRVVSI-----GDYSIELCGGTHNSNSSEV 679 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + ++SE+ + AG+RRIEA+TG+ A +L Q+E L+++ K + NVV +V + Sbjct: 680 GIFKVISETGVAAGVRRIEALTGRAAYEYLRQQEETLRTVEKLTKANASNVVEKVTNLQT 739 Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQK 818 E +KL K LQ + + + + + +N ++ ++ + LK ++D + Sbjct: 740 EIKKLS--KEKESLQQKIANAELNNLVNNIKEVNGINVLTSLVESENMNHLKQLVDNAKS 797 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K+++ II I+ + K + ++ V + + D++NA L + A V G GGGRP MAQ+G Sbjct: 798 KLENYIIAFASIN-DDKVNFVVAVDKAITDKYNAGKLVNILATVC-EGRGGGRPDMAQAG 855 Query: 879 GPNGNKADQAI 889 N + D+A Sbjct: 856 AKNKDNIDKAF 866 >gi|229105022|ref|ZP_04235676.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-28] gi|228678399|gb|EEL32622.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-28] Length = 880 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 540/913 (59%), Gaps = 63/913 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ+ GH + PS+SL+P DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +T++ EDEEAF +W + G+ ++IIR+ +NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTIHPEDEEAFTIWNEKMGVPKERIIRL--EENFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF QF LPK +IDTGMGLERM ++ Sbjct: 180 YGNDFSDPELYPGG--ENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N+D DLF +I A+E ++G KY ++ + +VI DH+R+ +F + DG LP+ Sbjct: 238 VQDVPTNFDTDLFMPMIGATESISGEKYCNGDLEKDMAFKVIADHIRTVTFAVGDGALPS 297 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ Y++ L P M L+P + M YPE+++ K I + +++ Sbjct: 298 NEGRGYVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKN 357 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL G +L V++ +++ +++G AF+LYDT+G P+++ ++ G+ Sbjct: 358 EEERFHETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT 417 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RARA + S + L E A++F+GY Sbjct: 418 -VDHKGFEAEMEKQRERARAARQDVDSMQVQG--GVLGEVKVASEFVGYG---------- 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T S + A+V+ GE + +G++ +++ D TPFYAE+GGQ+ D Sbjct: 465 -------------TVATESNIVALVKNGEYTDSLQAGEEGQLMLDVTPFYAESGGQIADR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG+++ + DVQK G +H +VE G L ++ ID +NR + NH+ATH Sbjct: 512 GYLLADGVKVVVKDVQKAPNGQNLHKVVVEEGTLTKGAAVKAVIDTKNRSSVVKNHTATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+HV+Q GS +T + LRFD +H + + EL+ IE VN+ I +++ V Sbjct: 572 LLHQALKDVLGTHVNQAGSLVTSERLRFDFSHFGQVQADELEKIERIVNEKIWESINVEI 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E+A GA AL G KY D VRVV V G +S LCGG HV +T I + IV Sbjct: 632 SQKSIEEAKEMGAMALFGEKYGDVVRVVQV-----GDYSLELCGGCHVDNTASIGIFKIV 686 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 +ES I AG RRIEA+TG+ A + Q LK A +K + +++ RV+ ++ E ++LQ Sbjct: 687 AESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQ 746 Query: 772 LIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +L N+ D S + VN ++ ++ D L+++MD L+ K++S ++ Sbjct: 747 KENESLAAKLSNIEAGNLTD-SVMTVDGVNVLAAKVNVADMNNLRTMMDDLKNKLESAVV 805 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +LV ++ + K ++L VT+DL+ + ++A L + A GGGGGGRP MAQ+GG N + Sbjct: 806 VLVSVN-DDKVNILAGVTKDLISQGYHAGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQ 863 Query: 885 ADQAIAGVASFLK 897 ++A+A V ++K Sbjct: 864 VEEALAFVQEYVK 876 >gi|154686881|ref|YP_001422042.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens FZB42] gi|205829982|sp|A7Z735|SYA_BACA2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|154352732|gb|ABS74811.1| AlaS [Bacillus amyloliquefaciens FZB42] Length = 878 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 352/910 (38%), Positives = 540/910 (59%), Gaps = 58/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT E D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +TV+ EDEEA+ LW + G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEK 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P SE E +RY+E+WNLVF +F LPK +IDTGMGLERM +V+ Sbjct: 180 Y-GNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSVI 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANE 295 Q+ + N+D DLF +I+A+E+++G Y + + + +VI DH+R+ +F ++DG LP+NE Sbjct: 239 QDVSTNFDTDLFMPIIEATERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ YA+ LG + P M L+P + M + YPE+ + + I + +++E+ Sbjct: 299 GRGYVLRRLLRRAVRYAKTLGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKVIKTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TL+ GL +L V+ + I++G FKLYDT+G P+++ ++ + + Sbjct: 359 ERFHETLNEGLAILSDVIKKEKEKGSGIISGKDVFKLYDTYGFPVELTEEYAEDEQMT-V 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +E+QR RAR +GS + +L++ + F+GY + K + Sbjct: 418 DHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSAV------KAEA 469 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ ++ G+++ EA G V+++ D+TPFYAE+GGQ+GD G Sbjct: 470 KVI-----------------ELLHDGQLISEAHEGDTVQILLDKTPFYAESGGQIGDRGV 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + + I DV+K G VH V+ G ++ S+ ++ Q R + NH+ATHLL Sbjct: 513 LRSEQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHTATHLL 572 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I +++PV + Sbjct: 573 HQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWESIPVAIDL 632 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +A GA AL G KY D VRVV V G +S LCGG HV++T EI L IVSE Sbjct: 633 KPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLFKIVSE 687 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG RRIEA+TG+ A + Q L+ A LK + +V R++ + E ++ Q Sbjct: 688 SGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKSNVKDVPKRIQSLQAELKEAQRE 747 Query: 774 HAKRKLQL-NVEDLSC-HKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828 + +L NVE + K+ D+ + + +V++K+ L++++D L+ K+ S +I+L Sbjct: 748 NESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSAVIILG 807 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + E K ++ VT+DL+++ +A + + +A+V GGGGGGRP MAQ+GG + K ++ Sbjct: 808 AVQNE-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVC-GGGGGGRPDMAQAGGKHPEKLEE 865 Query: 888 AIAGVASFLK 897 A+A ++K Sbjct: 866 ALASAVDWIK 875 >gi|121612666|ref|YP_001000209.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176] gi|167005165|ref|ZP_02270923.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176] gi|205830017|sp|A1VYL8|SYA_CAMJJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|87250291|gb|EAQ73249.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 81-176] Length = 842 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 354/892 (39%), Positives = 515/892 (57%), Gaps = 72/892 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF GHE+ PSS L+P +D TL+F N+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IRKAYLDFFASKGHEITPSSPLVP-DDATLLFANAGMVPFKSIFTGEIPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 Y+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQGE Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGE---- 175 Query: 186 GLPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 SSE+ G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K Sbjct: 176 EHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGK 235 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 +N+D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYV Sbjct: 236 FSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYV 295 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF Sbjct: 296 LRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLS 355 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 T++ G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F Sbjct: 356 TIENGIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFEL 412 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 + EQ++RA+A G G T + +L EK+G F+GY+ K C+ Sbjct: 413 LMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESK 460 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 + L + V + G V+ + TPFYA +GGQ D+G + Sbjct: 461 ILALLDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AK 504 Query: 541 LQITDVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D QK ++ + V+ G L+ + ID + R Q++ +HSATHLLHHAL Sbjct: 505 REVLDTQK---FFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALRE 561 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILGSHVSQ GS + + LRFD TH K + EL+SIE VN++I + + M E+A Sbjct: 562 ILGSHVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNEMIINSSEAILENMPLEEA 621 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 SGA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG Sbjct: 622 KKSGAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAG 675 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRK 778 +RRIEA+ + A + Q E+L + LK +++ V+++ E L+ + K Sbjct: 676 VRRIEAVVSKAALEFVKNQLEELSKVKDELK--NNDILNGVKKLKNEILSLKNELKNSSK 733 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 +L+ +++ +I + +D+ ++K+++D + K +I+L+ + EK Sbjct: 734 TELDSKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK---- 781 Query: 839 LIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 I + + D A L + +A++L GG GGGR A +GG + +K ++A+ Sbjct: 782 -ITLAAGVKDAPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831 >gi|82751218|ref|YP_416959.1| alanyl-tRNA synthetase [Staphylococcus aureus RF122] gi|123547858|sp|Q2YT60|SYA_STAAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|82656749|emb|CAI81178.1| alanyl-tRNA synthetase [Staphylococcus aureus RF122] Length = 876 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 348/924 (37%), Positives = 522/924 (56%), Gaps = 87/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D TL++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDTLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ +W K GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDMEAYNIWHKDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPAEEMYPGG------ENERYLEVWNLVFSEFNHNKDHSYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF ++ E+V+G +Y NN V +VI DH+R+ +F I+DG Sbjct: 234 MASVSQNVRTNYETDLFMPIMNEIEKVSGKQYLVNNEQDVAFKVIADHIRTIAFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE+ERF +TL+ GL +L+ ++ + +EI NG AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEDGLAILNELIKKAKATTNEI-NGKDAFKLYDTYGFPIELTEEIAVQA 412 Query: 409 GLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D+ +F +++QR RAR + S+ + S LK A+ F+GYD Sbjct: 413 GLK-VDMTTFESEMQQQRDRARQARQNSQSMQVQSEV-------LKNITSASTFVGYD-- 462 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T + + ++ GE V + +G+ V + +TPFYA Sbjct: 463 ---------------------TATAQTTLTHLIYNGEEVSQVEAGETVYFMLTETPFYAV 501 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+ DTG D + +++V K G +H V+ G + ++ ++ +RR + Sbjct: 502 SGGQVADTGIVYNDNFEIAVSEVTKAPNGQNLHKGAVQFGQVNVGATVSAEVNQNDRRDI 561 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL ++LG HV+Q GS + D LRFD +H P+T+ E+ +E VN+ I Sbjct: 562 QKNHSATHLLHAALKSVLGDHVNQAGSLVEADRLRFDFSHFGPMTNDEIDQVERLVNEEI 621 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + + V + M+ A GA AL G KY D VRVV++ S LCGG HV +T Sbjct: 622 WKGIDVNIQEMDIASAKEMGAMALFGEKYGDVVRVVNM-----APFSIELCGGIHVRNTS 676 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 EI L IVSES AG+RRIEA+TG+ A +L EK ++ S +KV S V+ ++ + Sbjct: 677 EIGLFKIVSESGTGAGVRRIEALTGKAAFLYLEDIQEKFNTMKSQMKVKSDDQVIDKLTQ 736 Query: 763 IWEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVM 813 + +E + L +R ++ N+ED ++ ++N +++EVD +K ++S M Sbjct: 737 LQDEEKALLKQLEQRDKEITSLKMGNIED----QVEEINGYKVLVTEVDVPNAKAIRSTM 792 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D + K+Q II+L + + K S++ V + L + A DL + A ++ G GGGRP Sbjct: 793 DDFKSKLQDTIIILAS-NVDDKVSMVATVPKSLTNNVKAGDLIKQMAPIV-SGKGGGRPD 850 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ GG ++++ + ++K Sbjct: 851 MAQGGGTQPENISKSLSFIKDYIK 874 >gi|284925772|gb|ADC28124.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni IA3902] Length = 842 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 350/888 (39%), Positives = 512/888 (57%), Gaps = 64/888 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 Y+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N+ Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRRI Sbjct: 240 DSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIEN 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + E Sbjct: 360 GIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q++RA+A G G T + +L EK+G F+GY+ K C+ + L Sbjct: 417 QKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESKILAL 464 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 + V + G V+ + TPFYA +GGQ D+G + ++ Sbjct: 465 LDEDFKEVSTLKDVG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508 Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D QK ++ + ++ G L+ + ID + R Q++ +HSATHLLHHAL ILGS Sbjct: 509 DTQK---FFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + + LRFD TH K + EL+SIE VN +I + + M E+A SG Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+RRI Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN 782 EA+ + A + Q E+L + LK +++ ++++ E L+ + K +L+ Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSSKTELD 737 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 +++ +I + +D+ ++K+++D + K +I+L+ + EK I + Sbjct: 738 SKNIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----ITL 784 Query: 843 TEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + D A L + +A++L GG GGGR A +GG + +K ++A+ Sbjct: 785 AAGVKDVPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831 >gi|254252618|ref|ZP_04945936.1| Alanyl-tRNA synthetase [Burkholderia dolosa AUO158] gi|124895227|gb|EAY69107.1| Alanyl-tRNA synthetase [Burkholderia dolosa AUO158] Length = 914 Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust. Identities = 303/672 (45%), Positives = 413/672 (61%), Gaps = 42/672 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH ++ SSSL+P NDPTLMFTNSGMV FK++F G ++ Y T Sbjct: 22 KAAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLMFTNSGMVQFKDVFLGTDRRPYSRAT 81 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T Q+ VRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+LLT + L + Sbjct: 82 TAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKQDAIKFAWELLTTVYLLPK 141 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTND-------NFWSMAETGPCGPCSEI 175 +L++TVY ED+EA+ +W K G++ ++IIRI N +TGPCGPC+EI Sbjct: 142 DKLWVTVYQEDDEAYDIWAKEVGVATERIIRIGDNKGARYAVGQLLDDGDTGPCGPCTEI 201 Query: 176 FFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 F+D G + GG PGS EE G+RYIEIWNLVFMQF + + LPK +DTGMGLER+A Sbjct: 202 FYDHGPDVWGGPPGSHEEDGDRYIEIWNLVFMQFNRDAQGNMTRLPKPCVDTGMGLERLA 261 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY+IDLF++LI+A+ +VT + NN + +VI DH+R+ +FLI DG++P N Sbjct: 262 AVLQHVHSNYEIDLFQNLIKAAARVTEVADLNNNSL--KVIADHIRACAFLIVDGVIPGN 319 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + LG L+ L EMG AYPEL +A+ + + LR E Sbjct: 320 EGRGYVLRRIVRRAIRHGYKLGRKGSFFHKLVADLVAEMGDAYPELKEAEQRVTDVLRQE 379 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T++ G+ +L+ L+ L ++L+G++AFKL+DT+G PLD+ D+ R + Sbjct: 380 EERFFETIEHGMSILEAALAELDAKGGKVLDGELAFKLHDTYGFPLDLTADVCRERSVT- 438 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D +F+ A+ QR +ARA K L+ T F GY+ + +D Sbjct: 439 VDEPAFDDAMARQREQARA-------AGKFKATQGLEYTGAKTTFHGYE-----EIAFDD 486 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ A+ G V E +GQ VV D TPFYAE+GGQ+GD G Sbjct: 487 AKVV-----------------ALYVDGSSVNEVKTGQHAVVVLDHTPFYAESGGQVGDQG 529 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K + HH +E+G L+ L ID Q R + NHSATHL Sbjct: 530 VLANAATRFAVADTLKVQADVIGHHGTLEQGTLKIGDVLRAEIDAQRRARTQRNHSATHL 589 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H AL +LGSHV Q GS + D RFD H+ P+T E++ +E VND I N P + R Sbjct: 590 MHKALREVLGSHVQQKGSLVDADKTRFDFAHNAPLTDDEIRRVEQIVNDEILANAPGIVR 649 Query: 653 IMNREDAIASGA 664 +M ++A+ GA Sbjct: 650 VMPYDEAVKGGA 661 >gi|242373918|ref|ZP_04819492.1| alanyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1] gi|242348472|gb|EES40074.1| alanyl-tRNA synthetase [Staphylococcus epidermidis M23864:W1] Length = 876 Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust. Identities = 345/920 (37%), Positives = 511/920 (55%), Gaps = 79/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYLDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED A+K+W + GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 EKLYVTIHPEDTGAYKIWNEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQNDPEEEMYPGG------ENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA++ Q NY+ DLF +I E ++G KY V +VI DH+R+ +F IADG Sbjct: 234 MASISQNVRTNYETDLFMPIINEVENISGKKYLEVDEQDVAFKVIADHIRTIAFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ + KD + G+ AFKLYDT+G P+++ +++ G Sbjct: 354 IKSEEERFHETLEEGLAILNQFIEKAKKDNHEIKGEDAFKLYDTYGFPVELTEELATQEG 413 Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L +D+ +F +++QR RAR + S+ + S LK + F+GY+ Sbjct: 414 LT-VDMATFENEMQQQRDRARQARQNSQSMQIQSEV-------LKNITDDSTFVGYE--- 462 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 T S + ++ GE VE +G+ V + +TPFYA + Sbjct: 463 --------------------TTDYQSTITHLIYNGEEVESVEAGETVYFILKETPFYAVS 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G + + +T+V K G +H V+ G + +++ RR + Sbjct: 503 GGQVADEGTVGNENFEIAVTEVTKAPNGQNLHKGTVQFGQATVGAEVDASVNKDERRAIQ 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV+Q GS + D LRFD +H P++ E+ +E VN+ I Sbjct: 563 KNHSATHLLHQALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMSQEEIDQVERRVNEEIW 622 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + + V + M ++A + GA AL G KY D VRVV++ S LCGG HV++T E Sbjct: 623 RGIDVRIQEMGIDEAKSMGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVNNTSE 677 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763 I L IVSES AG+RRIEA+TG+ A +L K ++ + +KV S VVG++ ++ Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKSAFLYLEDIQSKFNTIKNNVKVKSDDQVVGKITQL 737 Query: 764 WEEYRKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 EE + L +R ++ N+ED I D+ ++ + ++K ++S MD + Sbjct: 738 QEEEKNLLKQLEQRNKEITSLKMGNIED-QVETINDLKVLATEVDVPNAKAIRSTMDDFK 796 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K+Q II+L + K S++ V + L D+ A DL + A V+ GG GGGRP MAQ Sbjct: 797 SKLQDAIIVLAS-NVNGKVSIIATVPKSLTDQVKAGDLIKHMAPVV-GGKGGGRPDMAQG 854 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG K +A+ + ++K Sbjct: 855 GGTQPEKITEALRFIKDYIK 874 >gi|284048255|ref|YP_003398594.1| alanyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731] gi|283952476|gb|ADB47279.1| alanyl-tRNA synthetase [Acidaminococcus fermentans DSM 20731] Length = 875 Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust. Identities = 342/901 (37%), Positives = 516/901 (57%), Gaps = 58/901 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF++ GH +LPS+SLIP +DPTL+ +GM PFK FTG+ KP +TT Sbjct: 7 NEIRQKYLDFFKERGHLVLPSASLIPHDDPTLLLIGAGMAPFKPYFTGKVKPPATRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR G D++NVGRT RHHT+FEMLGNFSFG YFK+ I AW+ LTK +L + Sbjct: 67 QKCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWAWEFLTKVLELPADK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+ITVY +D+EA+ LW + G+ A++I+++ DN+W + GPCGP SEI D GE Sbjct: 123 LWITVYPKDQEAYDLWHDVCGVPAERIVKL--EDNWWEITSGGPCGPDSEIHIDLGEERG 180 Query: 185 GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P G + R++E+WNLVF Q+ ++ L +IDTG+GLER+A+VLQ K + Sbjct: 181 CGSPDCGPGCDCGRFLELWNLVFTQYNKEPDGSYTPLQHKNIDTGLGLERVASVLQNKPS 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N++ DL +I+ + +V+G Y + + V+ +VI DH RS +F+I DGILP+NEGRGY+ Sbjct: 241 NFETDLIFPIIEYACRVSGKTYNADPKDDVSLKVIADHARSVTFMIGDGILPSNEGRGYI 300 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA+ + RLLG + ++ + G Y +L + K IE+ + E+ F + Sbjct: 301 LRRVLRRAIRHGRLLGIRKEFLVGAADLVIDMYGDHYTDLREKKSYIEKVIAMEENSFLQ 360 Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL++G LL+ + + K +LNG+ AF+LYDT G P ++ ++IL +G +D F Sbjct: 361 TLEQGTDLLNQKIDAMRKAGSTVLNGEDAFQLYDTFGFPWELTEEILEEQGFT-MDKEGF 419 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +A+E QR RAR S +K G + E R + Sbjct: 420 EKAMEAQRERAR-------SARNDK--------------------EGKPVLYETRHLKLG 452 Query: 479 KPPIDLT--NG-VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +D NG V++I A + ++ A SG ++ V+ T F+AE GGQLGDTG + Sbjct: 453 TLTVDEASKNGKVAAIFPA--HDTQPIQNAKSGDELAVILTNTAFHAEGGGQLGDTGRLV 510 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D +TD +K +G + +E+G L + ++ + R ++ NH+ATHLLH Sbjct: 511 SDKGIFNVTDTKKLPDGYTIQLGTLEQGTLSVGDEVEFEVNLKRRADIARNHTATHLLHA 570 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LGSHV+Q GS + PD LRFD +H P+T EL +ED VN+ I + V Sbjct: 571 ALKQVLGSHVNQAGSYVGPDRLRFDFSHFSPLTEEELAQVEDIVNEKILDAVDVEISQQE 630 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E A GA AL G KY VRVV+V +S LCGG HVS+T I L I+SESS Sbjct: 631 LEKAREMGAMALFGEKYGKIVRVVNVPG-----YSMELCGGVHVSNTSHIGLFKILSESS 685 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773 + AG+RRIEA+TG+ A ++ + + A+ +K N+V R+ + E+ R K + Sbjct: 686 VGAGVRRIEAVTGRGALAYTRELENLIGEAATAVKGRPNNLVTRISALQEDLRAEKHRAD 745 Query: 774 HAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ++KL Q + V F++ + D L+ + D L+ K G+++L Sbjct: 746 EMEKKLVAAQAASVTADAKDVKGVAFLAQEVKVQDVDALRKMGDTLRDKT-GGVVVLAAP 804 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K ++L++ +++ + + +A +A+ A+ + GG GGGRP MAQ+GG + +K + + Sbjct: 805 MSADKVNILVMASKEAVKKGIHAGKIAKAVAQTM-GGNGGGRPDMAQAGGKDASKVQEGL 863 Query: 890 A 890 A Sbjct: 864 A 864 >gi|205355365|ref|ZP_03222136.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421] gi|205346599|gb|EDZ33231.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni CG8421] Length = 842 Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust. Identities = 350/888 (39%), Positives = 511/888 (57%), Gaps = 64/888 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IRKAYLDFFASKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 Y+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N+ Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRRI Sbjct: 240 DSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIEN 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + E Sbjct: 360 GIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q++RA+A G G T + +L EK+G F+GY+ K C+ + L Sbjct: 417 QKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESKILAL 464 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 + V + G V+ + TPFYA +GGQ D+G + ++ Sbjct: 465 LDEDFKEVSTLKDVG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508 Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D QK ++ + ++ G L+ + ID + R Q++ +HSATHLLHHAL ILGS Sbjct: 509 DTQK---FFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGS 565 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + + LRFD TH K + EL+SIE VN +I + + M E+A SG Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSG 625 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+RRI Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRI 679 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN 782 EA+ + A + Q E+L + LK +++ ++++ E L+ + K +L+ Sbjct: 680 EAVVSKAALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSSKTELD 737 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 + + +I + +D+ ++K+++D + K +I+L+ + EK I + Sbjct: 738 SKSIQGVEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----ITL 784 Query: 843 TEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + D A L + +A++L GG GGGR A +GG + +K ++A+ Sbjct: 785 AAGVKDVPLKAGTLVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 831 >gi|146296899|ref|YP_001180670.1| alanyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|205830010|sp|A4XKP4|SYA_CALS8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145410475|gb|ABP67479.1| alanyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 881 Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust. Identities = 347/909 (38%), Positives = 518/909 (56%), Gaps = 52/909 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ GH LPS SLIP ND +L+ N+GM P K F G E+P + +T Sbjct: 4 STDEIREKFLQFFESKGHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFLGIEEPPRRRIT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R D+D VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L + Sbjct: 64 TCQKCIRT----PDIDKVGKTARHATFFEMLGNFSFGDYFKKEAITWAWEFVTEILKLPK 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL++T+Y+ED+EAF++W K GL +I R+ DNFW + TGPCGPCSEI+FD+G Sbjct: 120 ERLWVTIYEEDDEAFEIWHKEVGLEEGRIKRMGKEDNFWEIG-TGPCGPCSEIYFDRGVD 178 Query: 183 IPGG--LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G G + +RY+E WNLVF QF++ L +IDTGMGLER+A ++Q Sbjct: 179 KGCGKETCGIGCDCDRYVEFWNLVFTQFDKDENGVYHRLKNPNIDTGMGLERIAAIMQGV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +DID+ K + ++TG +Y + V+ RVI DH+R + F+I DGILP+NEGRG Sbjct: 239 DSLFDIDIVKAIRDKICEITGCEYGKDSEKDVSIRVITDHIRGTVFMIGDGILPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + R+LG E + ++ + S YPELIQ I++ L +E+ RF Sbjct: 299 YVLRRLIRRAARHGRMLGKRETFLHLIVDTVIEAYKSPYPELIQKGEYIKKVLYNEESRF 358 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D GL LL+ + L K+ +L G++AFKLYDT+G PLD+ ++I +G+ +D Sbjct: 359 NQTIDIGLELLENEIDRLKKNKENVLKGEIAFKLYDTYGFPLDLTREIAAEKGII-VDQA 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ ++EQ+ RAR L + + I +++++ T F+GYD L Sbjct: 418 GFDRLMQEQKERARMAQKELENIGWKDINITIEDEV-ETVFVGYDTLE------------ 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S V I + V A G ++ D+TPFYAE+GGQ+ D G Sbjct: 465 -----------TQSRVLKIFSNDDEVSYAKEGDICYIILDKTPFYAESGGQVADKGVLET 513 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G ++ DV+K +G +H A V +G + + ++ ++ R NH+ATHLLH + Sbjct: 514 EGGVAEVLDVKKGPKGTILHKAKVIKGEIAVDNNIFAKVNKNLRLATMKNHTATHLLHSS 573 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG H +Q+GS + P+ LRFD H +P++ ++ IE VNDII Q +PV + Sbjct: 574 LRRILGEHATQSGSLVEPERLRFDFAHFEPLSEEQIVEIEKMVNDIIQQAIPVEKIQTDL 633 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + AI GA AL KY++ VRV+ + G S LCGGTHV +TG+I + I+SESS+ Sbjct: 634 DSAIKMGATALFDEKYSNIVRVIKI-----GDFSMELCGGTHVDNTGQIGMFKIISESSV 688 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLIHA 775 AG+RRIEAITG + ++ + LK + + LK S +V ++ ++ E L+ Sbjct: 689 AAGVRRIEAITGNKVYEFMLNNQKVLKDIRNKLKANSDSEIVAKINQLEERITALEKELE 748 Query: 776 KRKLQLNVEDLSC-----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL L +LS +I + + + D+ ++ + D +++K S I+L I Sbjct: 749 KHKLLLVDNELSLLYNEGLQIGEFRLIINKKETHDTDYIRLLTDRVREK-DSKAIVLNLI 807 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQA 888 ++KKA VL+ +++ + + +D + V + GG GGGRP AQ GG D A Sbjct: 808 KQDKKAIVLMACSKEAVKK--GIDCGKTVKDVCEVLGGKGGGRPDFAQGGGNKIENLDLA 865 Query: 889 IAGVASFLK 897 +K Sbjct: 866 AQRAIELIK 874 >gi|283954216|ref|ZP_06371740.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414] gi|283794234|gb|EFC32979.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 414] Length = 842 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 354/888 (39%), Positives = 514/888 (57%), Gaps = 64/888 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF GHE+ PSS L+P +D TL+FTN+GMVPFK+IF G+ +P T+ Q Sbjct: 3 IRKAYLDFFALKGHEITPSSPLVP-DDATLLFTNAGMVPFKSIFIGEVPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 Y+TV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 122 YVTVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N+ Sbjct: 180 SSQDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF +I ++ G Y + + RVI DH+RSS FL+A G+ EGRGYVLRRI Sbjct: 240 DSSLFMPIIDEIAKLCGKAYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG+ + M L+ +C MG Y L + K I+E + E+ERF T++ Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDFIKEQICLEEERFLSTIEN 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + E Sbjct: 360 GIEIFNEELKN--AKEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMNE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q++RA+A G G T + +L EK+G F+GY+ K C+ + L Sbjct: 417 QKARAKASWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KTECESKILAL 464 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 N V ++ G V+ + TPFYA +GGQ D+G + ++ Sbjct: 465 LNEDLKEVFSLKDAG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508 Query: 545 DVQKKAEGIFVHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D QK ++ + ++ G L+ + ID + R Q++ +HSATHLLHHAL ILGS Sbjct: 509 DTQK---FFNLNLSFIKAGEELKVGDIIHAKIDTEKREQIARHHSATHLLHHALREILGS 565 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HVSQ GS + + LRFD TH K ++ EL+SIE VN++I + + M E+A SG Sbjct: 566 HVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKSG 625 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL KY VRV+++ S LCGGTHV +T +I YI+ ES + AGIRRI Sbjct: 626 AIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIIKESGVSAGIRRI 679 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN 782 EA+ + A + Q E+L + + LK +++ V+++ E L+ + K +L+ Sbjct: 680 EAVVSKAALEFVKNQLEELFKIKNELK--NNDILSGVKKLKNEILNLKNELKNSSKTELD 737 Query: 783 VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 +++ +I + VD+ ++K+++D + K +I+L+ I EK I + Sbjct: 738 SKNIKGVEIC--------VKRVDNGDIKAMIDDFKNKFNKAVILLIQIKDEK-----ITL 784 Query: 843 TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + D A L + A++L GG GGGR A +GG + +K D+A+ Sbjct: 785 AAGVKDAPLKAGVLVKEVAQIL-GGNGGGRDDFATAGGKDLSKIDEAL 831 >gi|260583982|ref|ZP_05851730.1| alanine--tRNA ligase [Granulicatella elegans ATCC 700633] gi|260158608|gb|EEW93676.1| alanine--tRNA ligase [Granulicatella elegans ATCC 700633] Length = 881 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 358/921 (38%), Positives = 516/921 (56%), Gaps = 74/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FFQ+ GH++ PS+SLIP NDPTL++ NSG+ K F G E P +T Sbjct: 7 SEIRQMYLDFFQEKGHKVHPSASLIPVNDPTLLWINSGVATLKKYFDGTETPEVPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHT FEM+GNFS G YFKE I AW+ LT E LD Sbjct: 67 QKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEVIPWAWEFLTSEKWLALDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY+T Y +D E LW + GL D II + DNFW + GPCGP +EIF+D+GE Sbjct: 123 NRLYVTYYPKDPETKYLWMEKVGLPEDHIIPV--EDNFWDIG-AGPCGPDTEIFYDRGEK 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF QF LP ++DTGMGLER+ + Sbjct: 180 YQTLAEDDPENYPGG--ENERYLEIWNLVFSQFNHMPDGTYPPLPHKNVDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +IQ EQ++ G KY + V+ +VI DH+R+ SF I DG LP Sbjct: 238 VIQDTPTNFETDLFMPIIQQLEQLSAGKKYNTSKDLDVSFKVIADHIRAVSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGY++RR++RR++ + + LG + L+P + + M S YPE+ + I++ + Sbjct: 298 SNEGRGYIIRRLIRRSVMHGQRLGIQGSFLTKLVPTVASIMHSYYPEVTENMEFIQKVIA 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ RF +T+ GL +L+ V + + + +L+G+ AFKLYDT+G P ++ + G Sbjct: 358 NEENRFQETIHDGLAILETVFAEMKEQNQTVLSGENAFKLYDTYGFPYELTLEYASDNGY 417 Query: 411 AGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +D F ++ Q+ RARA S+ + S L++ + F+GYD R Sbjct: 418 E-VDEEGFQAEMKAQKERARAARNTETSMNVQSAV-------LRDITVESTFVGYD--RT 467 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++ ++ AIV + E+VE A+ +V+VVF+QTPFYAE G Sbjct: 468 TE---------------------KGLLSAIVYEDELVESALEDTRVQVVFNQTPFYAEMG 506 Query: 526 GQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G + ++ T VQ KKA H I ++ + VL +D Q R +L Sbjct: 507 GQLSDHGVIKDESGQVVATVVQVKKAPNGQPLHTIDVIAPMQLNSTYVLEVDQQERAKLI 566 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG+H +Q GS + P LRFD +H +T+ EL +E VN+ I Sbjct: 567 KNHTATHLLHQALKEVLGTHANQAGSLVAPGYLRFDFSHFGQVTAEELAEMERIVNEKIW 626 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 L VVT E+A GA AL G KY ++VR+V++ S LCGG HVS+T E Sbjct: 627 AALDVVTVETTLEEAKKLGAMALFGEKYGNKVRMVNI-----ANWSIELCGGVHVSNTQE 681 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEI 763 I L I+SES I AG+RRIEA+T Q A L + LK +AS +K Q + RV + Sbjct: 682 IGLFKILSESGIGAGVRRIEAVTSQEAFELLAKHELLLKQIASDVKSVQLDSTPERVSHL 741 Query: 764 WEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +E ++ Q + K +L V DL S + +F++ + D EL+ + D ++ Sbjct: 742 QQELKEAQHEISALKAKLMKSEVADLFESVSTAGNYSFITVHLPNKDMNELRQLADTWRQ 801 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K S + +V ++ +KA++L V++D ++ A D+ + A + GGGGGRP MAQ+ Sbjct: 802 KAASD-VFVVATNEGEKANLLAAVSKDANEKGIKAGDIIKSIASHI-QGGGGGRPDMAQA 859 Query: 878 GGPNGNKADQAIAGVASFLKK 898 GG N A+ V FL + Sbjct: 860 GGKNPAGIPAALKAVEEFLTQ 880 >gi|227498470|ref|ZP_03928616.1| alanyl-tRNA synthetase [Acidaminococcus sp. D21] gi|226903928|gb|EEH89846.1| alanyl-tRNA synthetase [Acidaminococcus sp. D21] Length = 874 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 338/900 (37%), Positives = 515/900 (57%), Gaps = 57/900 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF+ +GH +LPS+SLIP +DPTL+ +GM PFK FTG+ KP +TT Sbjct: 7 NEIRQKYLDFFKAHGHLVLPSASLIPHDDPTLLLIGAGMAPFKPFFTGKMKPPSPRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR +D++NVGRT RHHT+FEMLGNFSFG YFK+ I AW+ LTKE +L + Sbjct: 67 QKCVRT----DDIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWAWEFLTKELELPADK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+IT+Y +D+EA+ +W + G+ ++I+R+ DNFW + +GPCGP SEI D G Sbjct: 123 LWITIYPKDDEAYHIWHDVVGVPDERIVRL--EDNFWQIG-SGPCGPDSEIHIDLGADKG 179 Query: 185 GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P G + R++E+WNLVF QF Q L +IDTG GLER+A+V+Q K + Sbjct: 180 CGEPTCGPGCDCGRFLELWNLVFTQFNQNADGTYTPLKHKNIDTGAGLERLASVIQGKPS 239 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N++ DL +I+ + +++ KY + ++ +V+ DH RS +F+I DGILP+NEGRGYV Sbjct: 240 NFETDLIFPIIELACELSHKKYNADAKTDISLKVVADHARSLTFMIGDGILPSNEGRGYV 299 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA+ + RLLG + L + + G Y EL++ K I++ + E+ F + Sbjct: 300 LRRVLRRAIRHGRLLGIRGKFLAALADKVISMYGEHYTELVEKKEFIDKVIDMEETSFLQ 359 Query: 361 TLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL +G LL+ ++ + K+ +L+GD AFKLYDT G P ++ +IL +G+ +D F Sbjct: 360 TLSQGTDLLNEKIAAMKKENKTVLSGDDAFKLYDTFGFPWEVTDEILQEQGMT-MDKEGF 418 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++A+ Q+ RAR +K G M + R + + Sbjct: 419 DKAMASQKERAR-------KARNDK--------------------EGRPVMYDTRSLHLE 451 Query: 479 KPPIDLTNGVSSIVKAIVQQGEI--VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 +D + +V A+ Q+GE ++E +G + ++ T F+AE GGQLGDTG I Sbjct: 452 GLTVDEASK-EGVVAALYQEGETTPIKEGHTGDSLAIILTNTAFHAEGGGQLGDTGRLIS 510 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 D + + +K +G +H VE G ++ ++ + ++ NH+ATHLLH A Sbjct: 511 DAGIFDVENTKKLPDGTTIHLGTVESGAFSVGQAVTFEVNLDRKADIARNHTATHLLHAA 570 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS + PD LRFD +H P+T+ E+ +ED VN+ I + V + Sbjct: 571 LKKVLGGHVNQAGSYVGPDRLRFDFSHFSPLTAEEVSRVEDLVNEAILDAVDVQISEEDI 630 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A GA AL G KY VRVV+V HS LCGG HVS+T I L I+ ESS+ Sbjct: 631 DKAKEMGAMALFGEKYGKIVRVVNVPG-----HSMELCGGVHVSNTSRIGLFKILGESSV 685 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIH 774 AG+RRIEA+TG A + + L+ + +K ++ R+E + +E + K Sbjct: 686 GAGLRRIEAVTGHGALLYTRELEALLEDASQKVKGRPNTLLSRIEALQDELKAEKHHAAE 745 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGIS 831 ++KL + K+ DV + +I EV D L+S+ D L+ K GI++L Sbjct: 746 LEQKLVAAAAQSAGDKVKDVKGIPVLIDEVKVDDVSALRSMGDQLRDKT-GGIVVLFAAM 804 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 +K ++L + +++ + + +A + + +A+VL GG GGGRP MAQ+GG N K +A+A Sbjct: 805 APQKVNILTMASKEAVAKGAHAGKIVKAAAQVL-GGNGGGRPDMAQAGGKNSGKIAEAMA 863 >gi|313680711|ref|YP_004058450.1| alanyl-tRNA synthetase [Oceanithermus profundus DSM 14977] gi|313153426|gb|ADR37277.1| alanyl-tRNA synthetase [Oceanithermus profundus DSM 14977] Length = 895 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 347/934 (37%), Positives = 524/934 (56%), Gaps = 84/934 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA-- 60 + IR +L FF++ GH LP SLIP +DPTL+F +GM P K F G KPV+ Sbjct: 2 TTAEIREKYLRFFEEKGHLRLPPFSLIPEDDPTLLFIVAGMAPLKPYFMGA-KPVFPGHE 60 Query: 61 -----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 V T QKC+R G D++NVGRT RH+TFFEMLGNFSFG YFK+ AI AW+ +T Sbjct: 61 GEHRRVVTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAIAWAWEFVT 116 Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168 K LD RLY+TVY +D+EA+ +W+ + G+ ++I R ++NFW S GP Sbjct: 117 DPKWLGLDPDRLYVTVYKDDDEAYAIWRDVVGVPEERISRWDEDENFWPAGAISEGPNGP 176 Query: 169 CGPCSEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERFI--LPKM 222 CGPCSEIF+D+G P ++ G+R++EIWNLVF QF + E + LP+ Sbjct: 177 CGPCSEIFYDRGPGFGSPDETGPNTGSGDRFVEIWNLVFTQFNRSGPIPGEGVLEPLPQK 236 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSS 282 +IDTGMGL R+A +LQ+ + Y D FK LI + +G+ Y+G V+HRVI DH+R+ Sbjct: 237 NIDTGMGLYRVAAILQDVEDFYATDTFKPLIDLVAERSGVPYKGALSVSHRVIADHVRAV 296 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 ++DG +N GRGYV+RR++RRA+ + LLG EP + L P + +G YPE+ + Sbjct: 297 VAALSDGATFSNTGRGYVIRRLLRRAVRHGYLLGIKEPFLHELAPVVAELLGDYYPEMKE 356 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 ++ +R+E+ RF +TL++G+ L+ +L+ L + ++L G+ AF+L+DT+G PLD+ + Sbjct: 357 QLASVQPAIRAEEARFLETLEQGIRRLESLLAGLKEGDVLPGEEAFRLHDTYGFPLDLTE 416 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHS------LGLGSGTTEKIWFSLKEKYGATQ 456 +I RG+ +D F +A+ EQ RARA S + E+++ E +GAT+ Sbjct: 417 EIAAERGVK-VDREGFERAMREQVERARAASAFSGDVFAAAAPALERVF----EDHGATE 471 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVVF 515 F GY+ L +++ KVL ++ QGE ++ +GQ +VV Sbjct: 472 FTGYERL------EDEGKVL------------------LILQGEAELDRLEAGQGGQVVL 507 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+TPFYAE GGQ+GD+G G R ++ +K +G+ +H VE G L ++ + Sbjct: 508 DRTPFYAEGGGQVGDSGYLEWPGGRARVVTTKKSKQGLHLHEVEVEEGALAVGAAVRAVV 567 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D + RR NH+ATHLLH AL +LG V Q GS + PD LRFD TH+ ++ E++ + Sbjct: 568 DPE-RRCTEKNHTATHLLHAALRAVLGPQVRQAGSLVAPDRLRFDFTHAAALSPEEVRKV 626 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGGV 688 E VN + + PV M E+A +GA AL G KY D VRVV VE + V Sbjct: 627 ELLVNRWVQADFPVSWTFMPLEEAKKAGAMALFGEKYADTVRVVKVEGSPDTAGILEAEV 686 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S LCGG HV TGEI I +E ++ AG+RRIEA+TG+ A + ++ +LA Sbjct: 687 RSMELCGGCHVRRTGEIGYFVITAEEAVSAGVRRIEALTGEAAVRYARDLLDRDAALARA 746 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL------SCHKIADVNFMSHIIS 802 L S + R+E++ +E ++L+ + K L L + + +++ + Sbjct: 747 LGTSLEGLPQRIEKLQQELKQLRRENEKLAADLARAQLGGGGAPAVREAGGWRYVAAAFA 806 Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862 +D L+ V D + ++ +++ VG ++++ V+ D + R A + Sbjct: 807 GLDVPSLRQVADEILERYGVDLVV-VGAG----GALIVKVSPDAVQRGLAAGQVIRALAE 861 Query: 863 LGGGGGGGRPHMAQSGGPNGNKA----DQAIAGV 892 GG GGG+PH+AQ GG + KA D+ +AG+ Sbjct: 862 RTGGRGGGKPHLAQGGGFDVEKALAALDEVLAGL 895 >gi|210615765|ref|ZP_03290746.1| hypothetical protein CLONEX_02964 [Clostridium nexile DSM 1787] gi|210150101|gb|EEA81110.1| hypothetical protein CLONEX_02964 [Clostridium nexile DSM 1787] Length = 885 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 359/911 (39%), Positives = 525/911 (57%), Gaps = 60/911 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FL FF+ H ++ S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 12 VNELRKMFLNFFESKEHLVMKSFSLVPNNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 71 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD Sbjct: 72 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIHWSWEFLTEVVGLDPD 127 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF +W K G++ ++I + DNFW +GPCGPCSEI++D+GE Sbjct: 128 RLYPSVYVDDQEAFDIWNKEMGIAPERIFKFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 186 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V+Q+ Sbjct: 187 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNGNYEELEQKNIDTGMGLERLASVVQDVD 246 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L + ++Y + + V+ R+I DH+RS++F+I+DGI+P NEGRGY Sbjct: 247 SIFDVDTIKALRDKVCEFASVEYKADADKDVSIRLITDHIRSATFMISDGIMPTNEGRGY 306 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + K I + L E+++F Sbjct: 307 VLRRLIRRAARHGRLLGIDGKFLAKLSATVIEGSKDGYPELEEKKEFIFKVLTQEEDKFN 366 Query: 360 KTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 KT+D+GL +L + + GK +L+G AFKLYDT+G PLD+ ++IL G ID Sbjct: 367 KTIDQGLSILASMQDEMKEAGKT-VLSGADAFKLYDTYGFPLDLTKEILEEAGYT-IDEE 424 Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 F ++EEQR +AR + +G + ++I S+ ++F+GYD L + Sbjct: 425 GFKASMEEQRVKARNAREVTNYMGADATVYDEIEASV-----TSEFVGYDRLTHT----- 474 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + + + EIVE GQ + D+TPFYA GGQ GDT Sbjct: 475 ------------------SKISVLTTESEIVEAITEGQNGTIFVDETPFYATMGGQEGDT 516 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +++ K G H V +G+ + S+ L + + R NHSATH Sbjct: 517 GIICTEDAEFTVSNTIKLLGGKIGHVGNVTKGMFKVGDSVTLEVAEKERANTCKNHSATH 576 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL T+LGSHV Q GS +TPD LRFD H +T EL+ +E+ VN IA+N+PVVT Sbjct: 577 LLQKALKTVLGSHVEQKGSLVTPDRLRFDFAHFSAMTPEELEKVENIVNTEIAKNVPVVT 636 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +MN E A A+GA AL G KY + VRVVS+ G S LCGGTHVS+TG I IV Sbjct: 637 EVMNIEQAKATGAMALFGEKYEEDVRVVSM-----GDFSKELCGGTHVSNTGNITTFKIV 691 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ + AG+RRIEA+TG + +++L A K + N+ ++E + E + LQ Sbjct: 692 SEAGVAAGVRRIEALTGDGVFCYYKEVEKELAEAAKAAKSTPANLKEKIEHMQAEMKALQ 751 Query: 772 --LIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + K K + +++ +VN ++ + +VD L+ + D L++K+ G+++ Sbjct: 752 SEIESLKSKAAKDALGDVMNQVKEVNGVRLLATAVEDVDMNGLRDLGDQLKEKLGEGVVV 811 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + S K +++ + T++ +++ +A +L + A ++ GGGGGGRP+MAQ+GG N Sbjct: 812 IAS-SASGKVNLIAMATDEAMEKGAHAGNLIKGIAALV-GGGGGGRPNMAQAGGKNPAGI 869 Query: 886 DQAIAGVASFL 896 AIA A L Sbjct: 870 PDAIAKAAEVL 880 >gi|78044932|ref|YP_359396.1| alanyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901] gi|123576855|sp|Q3AEN8|SYA_CARHZ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|77997047|gb|ABB15946.1| alanyl-tRNA synthetase [Carboxydothermus hydrogenoformans Z-2901] Length = 874 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 359/906 (39%), Positives = 542/906 (59%), Gaps = 54/906 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ GH++LPS+SLIP NDP+L++T +GMVPFK FTG P + VTT QK Sbjct: 6 IREKFLKFFESKGHKILPSASLIPANDPSLLWTAAGMVPFKPYFTGAAVPEVRRVTTCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R D+++VGRT RHHTFFEMLGNFSFG YFK+ AI AW+ +T+ + + +LY Sbjct: 66 CLRT----PDIESVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWEFVTEHLGISKDKLY 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 IT+Y +D+EAF +W + G+ A++I R+ + NFW + GPCGPCSEI+ D G G Sbjct: 122 ITIYLDDDEAFDIWHNVVGVPAERITRLGKDTNFWEIG-VGPCGPCSEIYVDLGPEKGCG 180 Query: 187 LP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P G + + R++EIWNLVF+QF + + L + IDTGMGLER+A+VLQ +N+ Sbjct: 181 SPDCGVACDCGRFLEIWNLVFIQFFRDEQGNYTPLEQKGIDTGMGLERVASVLQGVPSNF 240 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 D D+F+ ++ + Q+ G+KY + V+ +VI DH R+ +F I DG LP+NEGRGYV+R Sbjct: 241 DTDIFREIMDYAAQILGVKYGYDEKVDVALKVIADHTRAITFAITDGALPSNEGRGYVIR 300 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLRSEDERFGKT 361 R++RRA+ + RLL EP + HL+ A E MG YPEL + + ++ E+E+F +T Sbjct: 301 RLLRRALRFGRLLDREEPFL-HLVAAKVIEQMGDVYPELREKAEHTLKIIKLEEEKFRET 359 Query: 362 LDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 L++GL +L ++ L GK EI G +AFKLYDT+G P+++ ++I +G +D F Sbjct: 360 LNQGLSMLAELMERLTQEGKKEI-PGHLAFKLYDTYGFPIELTKEIAEEKGFT-VDEEGF 417 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 Q +EEQR RAR + +T + LKE+ G F+GY+ L S Sbjct: 418 KQQMEEQRRRAREAREDVDYLSTRDAFLKQLKEELGEVTFVGYEKLSES----------- 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + + AI++ G+ VE + ++ E++ TPFY E GGQ+ D G +GD Sbjct: 467 ------------TEIIAIIKNGQKVESLAAEEEGEIITRVTPFYPEGGGQVADKGEILGD 514 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G +L + DV+K +H V G ++ L +D R + NH+ATHLLH AL Sbjct: 515 GFKLSVLDVEKPLSDFILHKVKVVEGSVKVGDKATLMVDETTRMSTARNHTATHLLHKAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HV+Q GS +TP+ LRFD TH + ++ +L+ IE+ VN+ I +NL V + Sbjct: 575 KMVLGEHVNQAGSLVTPERLRFDFTHFEGVSDEDLRKIENIVNEAILRNLLVQIDYTTLD 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +G AL KY D VRVV + G S+ LCGGTHVSSTG I I+ ESSI Sbjct: 635 EARKAGVIALFDEKYGDLVRVVKI-----GEFSAELCGGTHVSSTGVIGFFKILGESSIG 689 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLI 773 AG+RRIEA+TG A ++ ++ L+ K + + ++ + + E+ R+++ + Sbjct: 690 AGVRRIEALTGLGALEYVRSLEDTLQKATEPYKCTFAELPEKISNTLKTLKEKDREIEAL 749 Query: 774 HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K + V+ L S +I V +S II D + L+ D ++ + + +++L G+ Sbjct: 750 MQKIA-SIEVKSLLNSVREIKGVKVLSAIIDGADMEGLRKAYDVVKASLANYVVLLAGV- 807 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 K+ K + L V ++L D+++A +L + +AK+ GGGGGGRP MAQ+GG N K +A+ Sbjct: 808 KDGKVNFLAGVDKNLTDKYHAGELVKEAAKI-AGGGGGGRPDMAQAGGKNPEKVKEALQV 866 Query: 892 VASFLK 897 + ++++ Sbjct: 867 IDAYVQ 872 >gi|328955592|ref|YP_004372925.1| alanyl-tRNA synthetase [Coriobacterium glomerans PW2] gi|328455916|gb|AEB07110.1| alanyl-tRNA synthetase [Coriobacterium glomerans PW2] Length = 885 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 337/906 (37%), Positives = 513/906 (56%), Gaps = 57/906 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S IR +FL+FF++ G +++PSSSL+P DP+L+ N+GM FK + G++ Sbjct: 9 STSEIRASFLDFFERRGCKVVPSSSLLP-EDPSLLLANAGMNQFKQYYLGKKTMREIGAA 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R D+D +G RH +FFEMLGNFSFGG KE+A A++ T+ L Sbjct: 68 SCQKCIRT----TDIDIIGSDGRHLSFFEMLGNFSFGGVTKEQACAWAYEFSTEVLKLAP 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+ T++DEDEEA ++W+ + G+S D I R+ DNFW+ TGPCGPCSEI++DQGE Sbjct: 124 HRLHFTIFDEDEEAHEIWRAL-GVSEDHISRLGAEDNFWAAGPTGPCGPCSEIYYDQGEA 182 Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P + E +RY+E WNLVF ++++Q LP ++DTGMG+ER+A ++Q Sbjct: 183 FGCGSPTCAPGCECDRYLEFWNLVFTRYDRQADGSMPELPHRNLDTGMGIERVAAIVQHA 242 Query: 241 TNNYDIDLFKHLIQASEQVTG-----MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 ++NY+ D+ LI +++G + Y+G++ + R+I DH R+++F++ADGI P+NE Sbjct: 243 SSNYEGDVLSGLIALGVEISGRAYDPLSYQGDS-RSLRIIADHSRAATFMLADGIRPSNE 301 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ + RLLG + ++ MG Y ELI+ + L+ L SE+ Sbjct: 302 GRGYVLRRLIRRAVMHGRLLGIEGAFLSRFARSVIETMGPHYSELIEHRDLVVSFLASEE 361 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERF T+D G L+ L+ L + + L+G VAF L+DT G P+D+ +I RG++ ID Sbjct: 362 ERFFATIDNGSAFLEDALAGLARGDTLDGRVAFTLHDTFGFPIDLTIEIARDRGIS-IDE 420 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ A+ EQR RARA + + + +W L + T F+GYD + E R V Sbjct: 421 EGFDNAMTEQRERARAQVRDVAWSSFDSVWIGLADTISPTAFVGYD-----NYEAEARIV 475 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 AI+ + V+ + Q E+V D+TPF+ E GGQ+GDTG + Sbjct: 476 ------------------AIILEDRSVDAVEADQVAEIVLDRTPFFGERGGQIGDTGTLL 517 Query: 536 -GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM--SLVLTIDYQNRRQLSINHSATHL 592 DG + + + E I H + G R + +++ ID R ++ NH+ATHL Sbjct: 518 RPDGGTAFVVERTEWRERILCSH-VGRVGAERLSVGDTVIAQIDVARRERIRRNHTATHL 576 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG HV+Q GS + + LRFD TH T+ +L ++ED VND I ++LPV T Sbjct: 577 LHAALRGVLGEHVAQEGSFVDDERLRFDFTHFSACTADQLAAVEDRVNDWIFEDLPVATD 636 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E+A +SGA AL KY+ RVRVVS G S LCGGTH +T ++ + I+S Sbjct: 637 VMDLEEAKSSGALALFSEKYSSRVRVVSC-----GTASRELCGGTHAHTTSQLGIFKILS 691 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ESS+ RRIEA++ ARS + L A L+V +V RV + R+ Sbjct: 692 ESSVGTNTRRIEAVSSAGARSFFRRRLALLDETAEKLRVRPEDVPARVSALERSLRETSD 751 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIML 827 +L A + D + + D + +++ + D ++L+ D ++K+ + + Sbjct: 752 KLRRALVGDTSDAIDRAIGEAVDAGGYALVVARIDGLDPQDLRGAWDTIRKRSDGPVAAV 811 Query: 828 VGISKEKKASVLIVV-TEDLLDR-FNAVDL-ARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + + K+ VLI ED + F+ L R++ K+ GGGGGRP MAQ+GG Sbjct: 812 LAGATSKRTPVLIAAGDEDAVHAGFDGAALIKRIAPKI--AGGGGGRPAMAQAGGKETGG 869 Query: 885 ADQAIA 890 D A++ Sbjct: 870 IDAALS 875 >gi|28210757|ref|NP_781701.1| alanyl-tRNA synthetase [Clostridium tetani E88] gi|41018208|sp|Q896F2|SYA_CLOTE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28203195|gb|AAO35638.1| alanyl-tRNA synthetase [Clostridium tetani E88] Length = 879 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 344/915 (37%), Positives = 533/915 (58%), Gaps = 68/915 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+ GH + S SL+P ND +L+ N+GM P K FTG + P VTT Sbjct: 6 LNEIREAYLNFFEGKGHLRMESFSLVPKNDKSLLLINAGMAPLKPYFTGVQTPPKSRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +TK ++ + Sbjct: 66 CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKCEVIPWAWEFVTKSLNIPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGEC 182 +LY+T+Y +D+EA+ +W K + + +I R+ DNFW + + GPCGPCSEI + +GE Sbjct: 122 KLYVTIYLDDDEAYDIWTKSTDIDPSRIFRLGKEDNFWEIGQ-GPCGPCSEIHYQREGEK 180 Query: 183 IPGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 I S EE + IE WNLVF QF++ + L +IDTGMGLERMAT+ Sbjct: 181 I-----NSVEEFIKKSDDDEVIEFWNLVFTQFDKDENENYNRLAHPNIDTGMGLERMATI 235 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPAN 294 +Q + +++D K ++ ++ +KY N ++ RVI DH+RS +F+I+DGILP+N Sbjct: 236 MQGVNSIFEVDTIKAVLDEISEIANIKYGENKEKDISLRVITDHVRSVTFMISDGILPSN 295 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + +LLG + + + AY EL + + I++ ++ E Sbjct: 296 EGRGYVLRRLLRRASRHGKLLGIKGNFLYKVCKVVIENSHKAYKELKEKEEYIKKIIKLE 355 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +T+D G+ +L+ + L +++L GD AFKLYDT+G P+++ ++IL + + Sbjct: 356 EERFAETIDGGIQILNEYVDELINKGEKVLPGDKAFKLYDTYGFPIELTKEILEEKSI-D 414 Query: 413 IDIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 ID F + +E Q+ RARA + +G K+ L+ T+F+GY L Sbjct: 415 IDEGGFTKEMEAQKQRARAAREETNYMGSEDTIINKLPIELQ-----TEFLGYSEL---- 465 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 V + + AI++ E+VEE G K ++ D+TPFY+E GGQ Sbjct: 466 -------------------SVEAKIIAIIKGEELVEELKQGDKGIIIVDKTPFYSEKGGQ 506 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG G ++++I D + G +H + G ++ + ++ LT+D R + NH Sbjct: 507 IGDTGILAGKNVKVKIQDCRNNISGKILHFVEILEGSIKLQDTVNLTVDRLRRDAIRKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLLH AL I+G+H+ Q GS + LRFD H +T ELK++E VN I + + Sbjct: 567 SATHLLHEALKKIVGAHIEQAGSFVDEHRLRFDFNHFSSLTKEELKNVEKLVNKKIMEVI 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T++MN E+A SGA AL KY+++VRVVS+ G S LCGGTHVS++GEI L Sbjct: 627 PVNTKVMNIEEAKESGAVALFDEKYDEKVRVVSL-----GDFSKELCGGTHVSNSGEIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEI 763 I+SE+ + AG+RRIE +TG A ++ ++ L+ L LK S +++ + +EEI Sbjct: 682 FKIISETGVAAGVRRIEGVTGFNALKYIEEKEALLEGLCEVLKCSNKDIINKATSQIEEI 741 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + +++ + +K + ED+ + ++ + +S ++ ++D L+ + D L+ KIQ Sbjct: 742 KNKEKEINNLKSKL-ASGSQEDILKNIKEVKGIKLVSGVLKDIDGGALRDLADKLRDKIQ 800 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+++L + + K V + E + + + + A + GGGGGGRP MAQ+GG N Sbjct: 801 EGLVVLASVGEGKIQFVAMATKEAVAKGAHCGKIIKEVASI-AGGGGGGRPDMAQAGGKN 859 Query: 882 GNKADQAIAGVASFL 896 KA++AIA V L Sbjct: 860 PEKAEEAIAKVEDIL 874 >gi|257468000|ref|ZP_05632096.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] gi|317062286|ref|ZP_07926771.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] gi|313687962|gb|EFS24797.1| alanyl-tRNA synthetase [Fusobacterium ulcerans ATCC 49185] Length = 866 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 348/907 (38%), Positives = 527/907 (58%), Gaps = 62/907 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF+ H+ S+SLIP +D TL+ T +GMVPFK F GQ++ Y VTT Sbjct: 5 NQIRKEFIEFFEAKHHKHFESASLIP-DDATLLLTVAGMVPFKPYFLGQKEAPYPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +T+ +D+ + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWSWEFVTEVLKIDKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+++V+ D+EA ++W + ++++R+ ++N+W+ TG CGPCSEI D G Sbjct: 120 LWVSVFTTDDEAEQIWIEKCNFPKERLVRLGEDENWWAAGPTGSCGPCSEIHVDLGPAY- 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG R+IEIWNLVF ++ + LPK +IDTG GLER+A ++Q K Sbjct: 179 GGDENSKLGDEGTDNRFIEIWNLVFTEWNRMEDGSLEPLPKKNIDTGAGLERIAAMVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 +NN++ DL L++ + ++T +Y + N +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 SNNFETDLLFPLVEEAVKLTNSQYGRDEEENFSLKVITDHSRAVTFLINDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG +E + ++ + + M +AYP+L I++ ++ E+E+F Sbjct: 299 YVLRRILRRAVRHGRLLGQSELFLYKMVDKVVSMMENAYPDLRSNIDHIKKVVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TLD+G+ L++ + L I L+G+V FKLYDT+G P ++ ++I C I Sbjct: 359 SRTLDQGMQLVNQEIEKLKAAGITKLDGEVTFKLYDTYGFPYELTEEI-CQEKEIEISKE 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + EQ+ +ARA + + +KYGAT+F GY L K+ K+L Sbjct: 418 EFEAKMTEQKEKARAAREVVMEKGQDSFIEEFYDKYGATEFTGYTTL------KDTGKLL 471 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + D G+K+ ++FD TPFY E+GGQ D G G Sbjct: 472 SARDGKD------------------------GKKL-MIFDTTPFYGESGGQAADIGIITG 506 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +G ++ DVQK+ +GIF H V +G L +D NR + NH+ATHLLH A Sbjct: 507 NGFEGKVIDVQKQ-KGIFTHTVEVLKGTPIEGEEYFLEVDEANRMATAKNHTATHLLHEA 565 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LGSHV Q GS + + LRFD H + +T EL+ +E+ VN+ IA+ + V M+ Sbjct: 566 LREVLGSHVQQAGSFVNGERLRFDFNHYEAMTGEELEKVEELVNEKIAEAINVSVADMSM 625 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A +GA AL G KY D VRVVSVE S LCGGTH+ + G+I L I SE+ I Sbjct: 626 DEAKKAGATALFGDKYGDVVRVVSVEG-----FSIELCGGTHIDNIGKIGLFKIESEAGI 680 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQL 772 AGIRRIEA+TG+ A + + LK++ +K + N++ RVE+ I E ++L+ Sbjct: 681 AAGIRRIEAVTGKGAYKAVKNIEMLLKNVEKVVKSDEANLLDRVEKMVETIKENSKELEE 740 Query: 773 IHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + + R Q+ + L+ + I V + + +L+ ++D ++ K+ + +++L Sbjct: 741 LKS-RFTQIEAQALAENSEVINGVTVIMKTFKTTTADDLRKMVDYVKDKMANTVVVLA-- 797 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S KA VT++L + A +L + A V+ GG GGGRP AQ+GG + K +A+ Sbjct: 798 SGADKAIFAAGVTKELTSKVKAGNLVK-EAAVITGGNGGGRPDFAQAGGKDATKIQEAMN 856 Query: 891 GVASFLK 897 V LK Sbjct: 857 AVKETLK 863 >gi|153951507|ref|YP_001398463.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97] gi|205830016|sp|A7H4N3|SYA_CAMJD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|152938953|gb|ABS43694.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97] Length = 842 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 354/889 (39%), Positives = 511/889 (57%), Gaps = 66/889 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF HE+ PSS L+P +D TL+FTN+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IRKAYLDFFASKRHEITPSSPLVP-DDATLLFTNAGMVPFKSIFTGEIPRPNPPRKTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE+AI AW+ +T+ L + RL Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 YITV++ D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 122 YITVHENDDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFN 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N+ Sbjct: 180 SSEDYMGGDGDRFLEIWNLVFMQYERSANGVLSPLPKPSIDTGMGLERVTAIKEGKFSNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRRI Sbjct: 240 DSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ Sbjct: 300 LRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTYLNEKKDSIKEQIRFEEERFLSTIEN 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ + + L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + E Sbjct: 360 GIEIFNEELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELLMNE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q++RA+A G G T + +L EK+G F+GY+ K C+ + L Sbjct: 417 QKARAKASWKGSGDKTVSGDFKNLLEKFGENHFVGYE------------KAECESKILAL 464 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 + V + G V+ + TPFYA +GGQ D+G + ++ Sbjct: 465 LDEDFKEVSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AKREVL 508 Query: 545 DVQKKAEGIF-VHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 D QK F ++ + ++ G L+ ID + R Q++ +HSATHLLHHAL ILG Sbjct: 509 DTQK----FFNLNLSFIKAGEELKVGTIAHARIDAEKREQIARHHSATHLLHHALREILG 564 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 SHVSQ GS + + LRFD TH K ++ EL+SIE VN++I + + M E+A S Sbjct: 565 SHVSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKS 624 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA AL KY VRV+++ S LCGGTHV +T +I YIV ES + AG+RR Sbjct: 625 GAIALFNEKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRR 678 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQL 781 IEA+ + A + Q E L LK +++ V+++ E L+ + K +L Sbjct: 679 IEAVVSKAALEFVKNQLEGLSKAKDELK--NNDILSGVKKLKNEILSLKNELKNSSKTEL 736 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 + +++ +I + VD+ ++K+++D + K +I+L+ + EK I Sbjct: 737 DSKNIQGVEIC--------VKRVDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----IT 783 Query: 842 VTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + D A L + +A++L GG GGGR A +GG + +K D+A+ Sbjct: 784 LAAGVKDAPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKIDEAL 831 >gi|269123200|ref|YP_003305777.1| alanyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112] gi|268314526|gb|ACZ00900.1| alanyl-tRNA synthetase [Streptobacillus moniliformis DSM 12112] Length = 865 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 334/917 (36%), Positives = 533/917 (58%), Gaps = 81/917 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +F+EFF+ H+ S+SLIP +D TL+ T +GMVPFK+ F G++K Y +TT Sbjct: 4 NELRKSFIEFFKSKEHKHFESASLIP-DDKTLLLTVAGMVPFKSFFLGEKKAPYNRITTY 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVG T RHHTFFEMLGNFSFG YFK +I+ +W+ +T+ LD R Sbjct: 63 QKCIRT----NDLENVGVTPRHHTFFEMLGNFSFGDYFKRESIKWSWEYITEILKLDPNR 118 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD---QGE 181 LY++VY D+EA+ +W K G+ D ++R+ +DN+W+ E G CGPCSEI++D GE Sbjct: 119 LYVSVYLTDDEAYDIWTKEVGVPEDHMVRLGDDDNWWAAGEIGSCGPCSEIYYDTQIMGE 178 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 +EG R++EIWNLVF ++ + LP+ +IDTG GLER+A+V+Q K+ Sbjct: 179 NNEEINSKPGDEGNRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIASVVQNKS 238 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN++ DLF +I+ ++V +K E + + ++I DHL++S+FLI DG+LP+NEGRGY+L Sbjct: 239 NNFETDLFIPIIENIKEVLSIKEEEIS-TSVKIIADHLKASTFLICDGVLPSNEGRGYIL 297 Query: 302 RRIMRRAMCYA-----RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 ++++RRA + + + +++ ++ M AY EL + + I+ ++SE++ Sbjct: 298 KKLIRRAYGAGAIENREIFNKSLTFLHNIVDSIIDNMKEAYIELDEKREYIKNIIKSEED 357 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F +TL G +L + + I L DV+FKLYDT+G P + + I+ + Sbjct: 358 KFSRTLKSGTEILFEEIKKCKSENISKLPSDVSFKLYDTYGFPFEFTRLIVENNKM---- 413 Query: 415 IIS---FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 I+S FNQ LEEQ R++ + ++ ++ G T F GYD L + Sbjct: 414 IVSEDEFNQKLEEQVKRSQDSRVKNSDMIKDEFIDKFYKENGKTLFTGYDTLN------D 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + KVL K + + EV+F++TPFYAE GGQ+ D Sbjct: 468 EAKVLHIK-------------------------NLENELYEVIFNRTPFYAEGGGQIADK 502 Query: 532 GCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G D + ++ DV KK++ +F+H+ E L+ ++ +L +D + R + NH+AT Sbjct: 503 GVIKYDNKVIAEVKDVIKKSD-VFIHYISGEE--LKFDIEYILEVDKKRRNDIKKNHTAT 559 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH L +LGS V Q GS ++ DGLRFD ++ + ++ ++ IE+ VN++I +NLPV Sbjct: 560 HLLHKVLKDVLGSAVEQAGSLVSDDGLRFDFSYYEQVSQEQVNIIENKVNELILENLPVY 619 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 N DA+ GA AL KY D VRV+ + GV S LCGGTHVSSTGEI L I Sbjct: 620 INYENINDAVKKGAMALFSDKYGDVVRVIDI----SGV-SLELCGGTHVSSTGEIGLFKI 674 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--- 767 SE +GIRRIEA TG ++ ++ ++ ++ +++ K S N++ + + EE Sbjct: 675 KSEQGKASGIRRIEATTGYKSLEYVHNLEKDIQDISNKFKTSPVNLIPAINKYREEVKVQ 734 Query: 768 ----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKI 820 ++LQ +R ++ + DL+ I D+N + ++ + D ELK ++D ++ + Sbjct: 735 ENTIKELQ----RRLVKFEINDLTNEAI-DINGVKVLVKSFKDKDVNELKDLVDRAKEIL 789 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 +S +I+ S +KA + VT+DL+++++A ++ + +A + G GGGRP AQ+GG Sbjct: 790 KSCVILFG--SNNEKAIFVSGVTKDLINKYHAGNIVK-NAATIADGNGGGRPDFAQAGGK 846 Query: 881 NGNKADQAIAGVASFLK 897 +GNK +A+ ++K Sbjct: 847 DGNKVKEALEKTLEYIK 863 >gi|262038170|ref|ZP_06011567.1| alanine--tRNA ligase [Leptotrichia goodfellowii F0264] gi|261747818|gb|EEY35260.1| alanine--tRNA ligase [Leptotrichia goodfellowii F0264] Length = 870 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 331/914 (36%), Positives = 530/914 (57%), Gaps = 74/914 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +F++FF+ H+ S+SLIP +D +L+ T +GMVPFK F G+++ ++ +TT Sbjct: 4 NELRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFKRITTY 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK LD+ R Sbjct: 63 QKCIRT----NDLENVGKTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLDKER 118 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD------ 178 L+++V++ D+EA+K+W + G+ A++++R+ +DN+W+ G CGPCSEI++D Sbjct: 119 LWVSVFETDDEAYKIWNEEIGVPAERMVRLGEDDNWWAAGPVGSCGPCSEIYYDTQNMGK 178 Query: 179 ---QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + C PG +EG+R++EIWNLVF ++ + LP+ +IDTG G+ER+A+ Sbjct: 179 NNEEINCKPG------DEGDRFLEIWNLVFTEWNRLEDGTLVPLPEKNIDTGAGIERIAS 232 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 V+Q K +N++ DLF +I+ E+V +K E ++ +VI DH+R+S FLI DG+LP+NE Sbjct: 233 VIQNKKSNFETDLFMPIIKGIEKVLDIKKEEHDEA-VKVIADHIRASVFLIGDGVLPSNE 291 Query: 296 GRGYVLRRIMRRAMCYARL----LGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEET 350 GRGY+LR+I+RRA + + E + +H L + E M YP+L++ IE+ Sbjct: 292 GRGYILRKIIRRAFGVGSVAKEKVFEKEDIFLHKLVSYVVETMKDGYPDLVEKSEYIEKV 351 Query: 351 LRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++ E+ERF TL G +L ++ + L+ +++FKLYDT G P ++ + IL Sbjct: 352 IKIEEERFSTTLKNGTEMLSEEIAKLKKQNKKKLSSEISFKLYDTFGFPFELTKLILNNE 411 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ + F + LEEQ +R++ + + + EK+G T+F GY+ F Sbjct: 412 GIE-VSEEDFEKRLEEQITRSQRSRVTISDMIKDDFIDEFFEKHGKTEFTGYE-----NF 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + + K E +SG E++FD+TPFYAE+GGQ+ Sbjct: 466 ADKGKILYAAKS-----------------------EGMSG--YEMIFDKTPFYAESGGQV 500 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINH 587 DTG I G K +F+H V +GI+ E + V L ID + R+ + NH Sbjct: 501 SDTG-KITAGEFEGRVVDVVKKRDVFIHQVEVIKGIIPAENTTVELEIDVERRKDIQRNH 559 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATH+LH L LG+HV Q+GS + D LRFD +H +PI+ ++ IE VN++I N+ Sbjct: 560 TATHILHKVLREKLGTHVEQSGSLVESDRLRFDFSHYEPISKEMIEEIEYEVNNVILSNI 619 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 N ++A GA AL KY D VRVV + S LCGG HV STGEI Sbjct: 620 KTKIDYENIQEAKNRGAMALFSDKYGDIVRVVEIP-----GFSIELCGGAHVKSTGEIGF 674 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I SE+ I +G+RRI A TG ++ ++ G +EKL +++ +K + N+V +++ E+ Sbjct: 675 FNIESETGISSGVRRIIATTGHKSLEYVNGIEEKLAEISATMKSDENNIVEVLKKYKNEF 734 Query: 768 RKLQLIHAK---RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + L+ + + R L+ + ++ +I+ V ++ + ELK ++D ++K+QS Sbjct: 735 KDLEKAYMQLQSRLLKYEINEIFEGVEEISGVKVLAKTFENKNIDELKEIVDRGKEKLQS 794 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 GII+L S +KA + VT+DL+ + A D+ +++A+ G GGGRP AQ+GG NG Sbjct: 795 GIIILG--SNNEKAIFVAGVTKDLISKIKAGDIVKVAAQT-ADGNGGGRPDFAQAGGKNG 851 Query: 883 NKADQAIAGVASFL 896 + +A+ ++ Sbjct: 852 SAVKEAVEKSKEYI 865 >gi|237750646|ref|ZP_04581126.1| alanyl-tRNA synthetase [Helicobacter bilis ATCC 43879] gi|229373736|gb|EEO24127.1| alanyl-tRNA synthetase [Helicobacter bilis ATCC 43879] Length = 897 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 346/908 (38%), Positives = 518/908 (57%), Gaps = 88/908 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR ++EFF+ GH++ S L+P +D +L+FTN+GMV FK+IFTG+ P T+ Q Sbjct: 18 IRAKYIEFFKSKGHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPSPNIATSSQ 76 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI AW+ +T+ D+ L Sbjct: 77 LCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEILGFDKSLL 136 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180 Y+T+++ D+EAF+LW + + +I R+ DNFW M +TGPCGPCSEI+ DQG Sbjct: 137 YVTIHESDDEAFELW--CEHIESSRIKRMGDKDNFWQMGDTGPCGPCSEIYVDQGAEFFH 194 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E GG EG+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + Sbjct: 195 SEEDYFGG------EGDRFLEIWNLVFMQYERSADGTLTPLPKPSIDTGMGLERVIALKE 248 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--------------------NIVNHRVIVDH 278 + NN+D LF ++Q +++TG Y + +I + RVI DH Sbjct: 249 GEINNFDSSLFAPIMQCIKELTGKSYYRDSVLLKNTMGFAKDIIDSCKKDIASFRVIADH 308 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ +FL+A G+ EGRGYVLRRI+RRA+ + LLG + + ++ +C MG Y Sbjct: 309 ARAVAFLLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDSMGGHYS 368 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396 LI+ K ++E R+E+ERF +T++ G+ L L + + ++ NG++AFKLYDT+G Sbjct: 369 YLIERKNALQEQCRAEEERFFETIESGMALFQTELDSMRQKNEKSFNGEIAFKLYDTYGF 428 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+ QD+L GL G+D+ F + ++EQ+ R++AH G G + + +L +YG + Sbjct: 429 PLDLTQDMLRELGL-GVDMQGFEKCMQEQKDRSKAHWKGSGDSVKDGDFNALLSEYGKNE 487 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVF 515 F+GY+ + V S + A++ + VE +GQ+ V+ Sbjct: 488 FVGYERM-----------------------SVESKILALLDSNFKRVESLQAGQEGWVML 524 Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 + TPFY E+GG +GD G D I Q+ D QK G+ + +V +L+ + Sbjct: 525 ESTPFYPESGGPVGDKGILKNDSHIVTQVLDTQKYF-GLNLSK-VVATSMLKVGDLVKAQ 582 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D +R ++ +HSATHLLH+AL ILGSH++Q GS + + LRFD +H K ++ EL+ Sbjct: 583 VD-SSRFEIIKHHSATHLLHYALRQILGSHIAQAGSLVEANRLRFDFSHPKALSVDELEQ 641 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE VN+ IA++ P + M E A A GA AL G KY + VRV+++ S LC Sbjct: 642 IESLVNEEIAESSPQICETMGIEQAKAKGAMALFGEKYGESVRVITLG------DSVELC 695 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK---V 751 GG H+ +T EI YIV ESS+ +G+RRIEA+ G+ A ++ E +KSL LK V Sbjct: 696 GGIHIHNTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYNYGKAALESIKSLKEQLKAQDV 755 Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811 QG V +++ +E R+ + K + +V+ L ++ V + + V++KE K Sbjct: 756 LQG--VAKLQNALKEARE-----SANKAKQSVKSLDYEEVNGVKLIVLKLDLVEAKEAKD 808 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 ++D + + + I+LV E V + + A + A++L GG GGGR Sbjct: 809 IIDRAKNENEKVAILLV---TESGGKVSLTAGVKGVSSLKAGAWVKQVAQIL-GGNGGGR 864 Query: 872 PHMAQSGG 879 A +GG Sbjct: 865 DDFATAGG 872 >gi|46203377|ref|ZP_00051608.2| COG0013: Alanyl-tRNA synthetase [Magnetospirillum magnetotacticum MS-1] Length = 473 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 277/462 (59%), Positives = 341/462 (73%), Gaps = 2/462 (0%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 MS V+ IR+TFL++F+ GH ++PSSSL+P NDPTLMFTN+GMV FKN+FTG EK Y Sbjct: 1 MSGVNEIRSTFLDYFRDAGHAVVPSSSLVPKNDPTLMFTNAGMVQFKNVFTGVEKRPYVK 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T+ QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFK AI+LAW L+TKEF L Sbjct: 61 ATSSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKADAIELAWRLITKEFGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL +TVY +D+EA LWKKI+G DKIIRI T+DNFW M +TGPCGPCSEIF DQG Sbjct: 121 TPERLLVTVYADDDEAAGLWKKIAGFGDDKIIRIGTSDNFWQMGDTGPCGPCSEIFIDQG 180 Query: 181 ECIPGGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + GG PGS E+G+R++E WNLVFMQ+EQ R LP+ SIDTGMGLERMA +LQ Sbjct: 181 PTLAGGPPGSPDEDGDRFLEFWNLVFMQYEQVEPGVRNPLPRPSIDTGMGLERMAAILQG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +NYD DLF+ LI A ++RVI DHLRS+SFLIADG+LP+NEGRGY Sbjct: 241 VHSNYDTDLFRALIDAVAHAVSRAPTLETRASYRVIADHLRSTSFLIADGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRIMRRAM + LLG +P+M L+PAL EMG A+PEL++++ LI ETLR E+ RF Sbjct: 301 VLRRIMRRAMRHLELLGARDPVMYRLVPALVREMGQAFPELVRSEALISETLRLEEGRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RGL +LD L + L+G+ AF LYDT+G PLD+ QD L ARG+ G+D +F+ Sbjct: 361 KTLERGLAILDTESRDLSAGQNLSGETAFTLYDTYGFPLDLTQDALKARGI-GVDTAAFD 419 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 A++ Q+ ARA G G TE +WF +KE+ GAT+F+GY+ Sbjct: 420 AAMQRQKQAARAAWQGSGEAATETVWFGIKERTGATEFLGYE 461 >gi|270307496|ref|YP_003329554.1| alanyl-tRNA synthetase [Dehalococcoides sp. VS] gi|270153388|gb|ACZ61226.1| alanyl-tRNA synthetase [Dehalococcoides sp. VS] Length = 876 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 352/905 (38%), Positives = 534/905 (59%), Gaps = 55/905 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK + G KP +T+ QK Sbjct: 12 LRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENPRMTSCQK 71 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C R D+++VG + H T FEMLGNFS G YFK+ AI AW+ +T+ ++ RL+ Sbjct: 72 CFRT----TDIESVGDAS-HLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNIPAERLW 126 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGE---C 182 +TVY +D+EA LWK+ G+S +I+R+ DNFW A ++GPCGPCSEI +D G+ C Sbjct: 127 VTVYLDDDEAIALWKE-QGVSEGRIVRLGAADNFWGPAGDSGPCGPCSEIHYDFGQEMGC 185 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 S + G R+ EIWNLVF+QF Q +R LP SIDTGMGLER+ ++Q K N Sbjct: 186 GKADCNPSCKCG-RFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILMQSKKN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ D+F +++ + Q++G KY + + R++ +H R +FLIADG++P GRGYV Sbjct: 245 VYETDIFAPIVEKACQLSGKKYGCDTATDRALRIVSEHSRGITFLIADGVIPDKAGRGYV 304 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA+ + R LG +P ++ + A+ M YPEL + + + E + SE+ RF + Sbjct: 305 LRRLLRRAVLFGRRLGLEKPFLVDMAGAVIARMSGIYPELKKRQTYVLEMIASEEARFSE 364 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL GL LL+ ++ + +I +G AFKLYDT+G P+++ +I RGL+ +D+ F Sbjct: 365 TLATGLELLEEIVRQIKGGQI-SGQDAFKLYDTYGFPVEMTTEIAAERGLS-VDLGGFEA 422 Query: 421 ALEEQRSRARA-HSLGLGSGTTEKIWFSLK--EKYGATQFIGYDLLRGSKFMKEDRKVLC 477 +E QR++AR+ + T + +++ EK T F+GY+L R Sbjct: 423 EMEVQRTKARSSRKFSFDAAATAEAVKNMRHGEK---TCFVGYELTR------------- 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 QK S + I+ +G V+ G + +V D++PFYAE GGQ+GDTG I Sbjct: 467 QK----------STIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEIITG 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G R ++ + G+F+H V G L+ S ID + RR ++ NH+ATH+L AL Sbjct: 517 GGRFEVKNTLHLPNGVFLHQGRVISGCLKISESAAAHIDEERRRDIARNHTATHILQTAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG V Q GS +TP+ LRFD +H +P+T E++ E+ VND I +NLPV M Sbjct: 577 RQVLGEQVQQRGSVVTPERLRFDFSHLRPMTKDEIRRAEEFVNDKIRRNLPVYAEEMPYR 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A+ G AL G KY DRVRV+ V S+ LCGGTHVS++GEI L IVSESS+ Sbjct: 637 HALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVSASGEISLFKIVSESSVG 693 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHA 775 AG+RRIEA+TG+ A +++ Q + L L+ L+ + + ++ E+ EE L+ + + Sbjct: 694 AGLRRIEAVTGREAEAYINLQQDSLSELSGMLEAAPEESLRKLAELKEEIDTLKKTVQNL 753 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISK 832 +R++ + K D + ++S V++ L+ D L+ K+ SG+I+L G Sbjct: 754 ERQMSRGEAEELLSKAEDYKGIKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GTVS 812 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K L +VT DL+++ ++A ++ + +++ GGGGGG+P+MAQ GG + K D+A+ Sbjct: 813 EDKPFFLCMVTPDLIEKGYHAGNIVKKLSQI-AGGGGGGKPNMAQGGGRDKAKLDEALQA 871 Query: 892 VASFL 896 V L Sbjct: 872 VKGML 876 >gi|308174440|ref|YP_003921145.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7] gi|307607304|emb|CBI43675.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens DSM 7] Length = 878 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 353/911 (38%), Positives = 538/911 (59%), Gaps = 60/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT E D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +TV+ EDEEA+ LW + G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEK 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P SE E +RY+E+WNLVF +F LPK +IDTGMGLERM +V+ Sbjct: 180 Y-GNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSVI 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPAN 294 Q+ N+D DLF +I+A+E+++G Y G + V +VI DH+R+ +F ++DG LP+N Sbjct: 239 QDVPTNFDTDLFMPIIEATERISGDAY-GKDAVKDTAFKVIADHIRTVAFAVSDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ +G + P M L+P + M + YPE+ + + I + +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKTIGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKVIKTE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL+ GL +L V+ + I++G FKLYDT+G P+++ ++ + Sbjct: 358 EERFHETLNEGLAILSDVIKKEKEKGSGIISGKDVFKLYDTYGFPVELTEEYAEDEQMK- 416 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F +E+QR RAR +GS + +L++ + F+GY + K + Sbjct: 417 VDHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSAV------KAE 468 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 KV+ ++ G+++ EA G V+++ D+TPFYAE+GGQ+GD G Sbjct: 469 AKVI-----------------ELLHDGQLISEAQEGDTVQILLDKTPFYAESGGQIGDRG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + I DV+K G VH V+ G ++ S+ ++ Q R + NH+ATHL Sbjct: 512 VLRSEQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I +++PV Sbjct: 572 LHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWESIPVAID 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + +A GA AL G KY D VRVV V G +S LCGG HV++T EI L IVS Sbjct: 632 LKPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG RRIEA+TG+ A + Q L+ A LK + +V R++ + E ++ Q Sbjct: 687 ESGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKSNVKDVPKRIQSLQAELKEAQR 746 Query: 773 IHAKRKLQL-NVEDLSC-HKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIML 827 + +L NVE + K+ D+ + + +V++K+ L++++D L+ K+ S +I+L Sbjct: 747 ENESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSAVIIL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + E K ++ VT+DL+++ +A + + +A+V GGGGGGRP MAQ+GG K + Sbjct: 807 GAVQNE-KVNLSAGVTKDLIEKGLHAGKMVKQAAEVC-GGGGGGRPDMAQAGGKQPEKLE 864 Query: 887 QAIAGVASFLK 897 +A+A ++K Sbjct: 865 EALASAEDWIK 875 >gi|225572273|ref|ZP_03781137.1| hypothetical protein RUMHYD_00567 [Blautia hydrogenotrophica DSM 10507] gi|225040257|gb|EEG50503.1| hypothetical protein RUMHYD_00567 [Blautia hydrogenotrophica DSM 10507] Length = 868 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 356/905 (39%), Positives = 527/905 (58%), Gaps = 60/905 (6%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 FLEFF+ GH L S SLIP ND +L+ NSGM P K FTG E P + VTT QKC+R Sbjct: 2 FLEFFESKGHLALKSFSLIPQNDKSLLLINSGMAPMKPYFTGAEIPPRKRVTTCQKCIRT 61 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130 G D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+ LD RLY ++Y Sbjct: 62 G----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIRWSWEFLTEVVGLDPDRLYPSIY 117 Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190 +DEEAF++W K G++ ++I R DNFW GPCGPCSEI++D+GE PG Sbjct: 118 LDDEEAFEIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCKKPGC 176 Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248 + + +RYIEIWN VF QFE + L + +IDTGMGLER+ATV+QE + +D+D Sbjct: 177 TVGCDCDRYIEIWNNVFTQFENDGEGHYTELEQKNIDTGMGLERLATVVQEVDSIFDVDT 236 Query: 249 FKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306 L ++ G++Y + V+ R+I DH++SS+F+I+DGI+P NEGRGYVLRR++R Sbjct: 237 NCALRNRVCELAGVEYLKDEKTDVSIRLITDHVKSSTFMISDGIMPTNEGRGYVLRRLIR 296 Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366 RA + RLLG M L + YPEL + K I L +E+ +F KT+D+GL Sbjct: 297 RAARHGRLLGIDGKFMAKLSATVIEGSKDGYPELEEKKDFIFNVLNNEENQFNKTIDQGL 356 Query: 367 VLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 +L + + K ++L G+ AFKLYDT+G PLD+ ++IL +G +D F +A+E Sbjct: 357 RILADLEEKMEKAGTKVLTGEEAFKLYDTYGFPLDLTKEILEEKGRQ-VDEEGFQKAMEI 415 Query: 425 QRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 QR +AR ++ +G + ++I S+ T+F+GY+ L Sbjct: 416 QRKQAREAREVSNYMGADATVYDEIDPSV-----TTEFVGYEHL---------------- 454 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDG 538 S + + + EIV + GQ+ V +TPFYA GGQ GDTG + +G Sbjct: 455 -------AFESEITVLTTEKEIVSSLMEGQRGTVFVKKTPFYATMGGQEGDTGLISTANG 507 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + Q+ + K G + H + G+L + + L ++ Q RR NHSATHLL AL Sbjct: 508 V-FQVEETIKLRGGKYGHVGHMVSGMLSVQDVVRLEVNVQGRRDTEKNHSATHLLQKALK 566 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG+HV Q GS +TPD LRFD H + +T E++ +E VN I + LPV T IM+ E+ Sbjct: 567 VVLGAHVEQKGSLVTPDRLRFDFAHFQAMTPEEMEKVEKLVNQEIQEALPVRTDIMDIEE 626 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A +GA AL G KY++ VRVVS+ G S LCGGTHVS+T +I+L +VSES I A Sbjct: 627 AKKTGAMALFGEKYDEEVRVVSM-----GEFSKELCGGTHVSNTSQILLFKLVSESGIAA 681 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+TG + + L A K S G + ++ + E + L + K Sbjct: 682 GVRRIEALTGNGVMEYYKNLESLLNQAAKAAKTSTGELSDKIFHMQNEIKALHSENESLK 741 Query: 779 LQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 ++ + L ++ V ++ + VD L+ + D L++K++ G+++L+ ++ Sbjct: 742 SKMAQDSLGDVMNQVTEVKGVKLLAVKLENVDVSGLRDLGDQLKEKLEEGVVVLITVNS- 800 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K ++L + T+ + + +A +L + +A ++ GGGGGGRP+MAQ+GG + K ++A+ + Sbjct: 801 GKVNLLAMATDGAMKQGAHAGNLIKAAAAIV-GGGGGGRPNMAQAGGKSPEKVEEALQKI 859 Query: 893 ASFLK 897 L+ Sbjct: 860 PEILE 864 >gi|169334468|ref|ZP_02861661.1| hypothetical protein ANASTE_00871 [Anaerofustis stercorihominis DSM 17244] gi|169259185|gb|EDS73151.1| hypothetical protein ANASTE_00871 [Anaerofustis stercorihominis DSM 17244] Length = 874 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 343/904 (37%), Positives = 527/904 (58%), Gaps = 46/904 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FLEF++ GH L S SL+P ND +L+ NSGM P K F G+E P + VTT Sbjct: 6 LNELRKMFLEFYESKGHLRLESFSLVPHNDKSLLLINSGMAPLKPYFIGEEVPPKKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D+DNVG+T RH TFFEMLGNFSFG YFK+ AI AW+ LT++ LD+ Sbjct: 66 CQKCIRTP----DIDNVGKTARHGTFFEMLGNFSFGDYFKKEAIAFAWEFLTEKIGLDKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY++VY+ D+EA ++WK GL+ ++I R+ DNFW + GPCGPCSEI+ D+GE Sbjct: 122 KLYVSVYENDDEAAEIWKNDIGLTDNRITRLGKEDNFWEIG-LGPCGPCSEIYVDRGEEY 180 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 P G + +RY+E+WNLVF QF++ + L +IDTGMGLER+A +QE Sbjct: 181 GCDRPTCGVGCDCDRYMEVWNLVFTQFDKDKEGNYNKLEHPNIDTGMGLERLAAYVQEVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D ++++ +++G KY N+ V+ RVI DH+RSS F+ +DGIL +NEGRGY Sbjct: 241 NIFEVDTIRYILDYICEISGKKYGVNENDDVSIRVITDHIRSSVFMASDGILTSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VL+RI+RRAM + +LLG M + + G AYP L + + I + + E+E+F Sbjct: 301 VLKRILRRAMRHGKLLGIEGHFMEGVAKKVIEISGEAYPALREKETTILKLINIEEEKFN 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +T+++GL ++D ++++L K + L G AFKLYDT+G PL++ ++IL +GL +D F Sbjct: 361 ETVNQGLSMIDELIANL-KGDTLGGLDAFKLYDTYGFPLELTEEILEEKGLK-VDKNGFE 418 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A++EQ+ +AR+ + + + +T+F GY+ L + E ++ Sbjct: 419 KAMQEQKDKARSARNNKEIVSYKGDLTNFIANLPSTEFSGYESLSDKGKVIE---IIKDN 475 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ID+ N +GEI V+F++TPFYA +GGQ+ D G D + Sbjct: 476 EAIDILN-----------EGEI---------GLVIFNRTPFYATSGGQVHDIGKIEDDKV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ V K + FVH + G L + +T+D QNR NHSATHLLH AL Sbjct: 516 NAKVKSVTKSGDK-FVHEVEIISGSLEADKEYSMTVDKQNRLNTERNHSATHLLHKALKE 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG HV+Q GS + + LRFD +H + +T+ EL IE VN I V + ++A Sbjct: 575 VLGEHVNQAGSYVDSERLRFDFSHFEKVTNEELDEIEKRVNAEILNKDEVNYFETSIDEA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA AL G KY VRVV + G +S LCGG HV++T +I + I+SESS+ +G Sbjct: 635 RKLGATALFGEKYGSNVRVVKM-----GDYSIELCGGCHVNNTNDISMFKILSESSVASG 689 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777 +RRIEAITG+ A + + +L+++ L+++ N++ +V+E+ + + L +L ++ Sbjct: 690 VRRIEAITGKCAIEESLEKYHELQTIKDKLRLNNNNIIEKVDELLNKNKSLLKELEAFRK 749 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGISKEK 834 + +V DVN + ++VD +L+ + D ++ K+++ I+ LV ++ EK Sbjct: 750 EANKDVVSGIIDNAFDVNGTKCVFAKVDGLNVNDLRELSDKVKDKVENVIVFLVSVAGEK 809 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + E + D FN + A V G GGGGRP MAQ+G + +KAD A+ Sbjct: 810 GFMIASASKEAVKDGFNCGKFIKDVA-VSIGSGGGGRPDMAQAGIKDISKADMALENAKG 868 Query: 895 FLKK 898 F+K+ Sbjct: 869 FIKE 872 >gi|189499310|ref|YP_001958780.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides BS1] gi|189494751|gb|ACE03299.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides BS1] Length = 886 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 348/903 (38%), Positives = 518/903 (57%), Gaps = 67/903 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +FL++F+K H ++ S+ +IP DPTL+FTN+GM FK++F + Y Sbjct: 4 SDIRQSFLDYFEKKEHTIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLDKGSRPYSRAADT 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT+ + L + R Sbjct: 64 QKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIAWAWELLTEVWSLPKER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY TVY +D+E+ ++WK + + D I++ DNFW M ETGPCGPCSEI D + + Sbjct: 124 LYATVYQDDDESLEIWKTATDIDPDHIMKFGDKDNFWEMGETGPCGPCSEIHIDLTDDLS 183 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G ++++ R IE+WNLVF+Q+ ++ + LPK +DTGMG ER+ VLQ K +NY Sbjct: 184 GRELVNADD-HRVIELWNLVFIQYNRKADRSLEPLPKKHVDTGMGFERITAVLQSKGSNY 242 Query: 245 DIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 D D+F L A TG+ Y +G + RVI DH R+ +F I DG +P NEGRGYV Sbjct: 243 DTDIFAPLFDAITAHTGVAYTATLDGERDMAMRVIADHARTLTFAITDGAVPGNEGRGYV 302 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ YAR L +P++ L+ + MG+ +PEL + + +E+ ++SE+E F Sbjct: 303 LRRILRRAVRYARKLDCNQPVLYRLVGVIADTMGAVFPELKKQQATVEKIVKSEEESFLV 362 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL RG+ + + + L K++ ++G+ AF+LYDT+G PLD+ + + GL G+D F Sbjct: 363 TLGRGIEIFGEIAAALKASKEKSISGEDAFRLYDTYGFPLDLTRLMASEEGL-GVDEKGF 421 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++EQ+ RAR T ++ + E+ G T F+GY+ L Sbjct: 422 GACMKEQKERARKDRKQKQQITGDEGQWQWFEQKGPTVFLGYETLE-------------- 467 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + +I+ ++G ++++V DQTPFYAE+GGQ GD G G+ Sbjct: 468 ------------------TEAQIIGVRIAGSQMQLVLDQTPFYAESGGQTGDRGRIEGEN 509 Query: 539 IRLQITDVQKKAEGIFVHHA--IVER--GILRTEMSLVLT--------IDYQNRRQLSIN 586 + D +K + + VH A + +R G T S+ + +D + R N Sbjct: 510 YIFDVIDTRKDGD-VIVHVAGTVYDRATGGEVTPESIAFSQAVQVQAQVDKETREATERN 568 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL +LG HV Q GS + PD LRFD +H + +++ EL+++E VN+ I + Sbjct: 569 HTATHLLHAALRKVLGEHVQQKGSLVGPDRLRFDFSHFEKVSAGELEAVEAEVNERIREA 628 Query: 647 LPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +V + E A+ GA A G KY DRVRVV V GV S LCGGTHVS+ G+I Sbjct: 629 GALVKHADIPYEAALEKGALAFFGDKYADRVRVVEVP----GV-SMELCGGTHVSNVGQI 683 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIW 764 L I+SESSI +GIRRIEA++G+ A L G ++L+ + L+ + +V RV+E+ Sbjct: 684 GLFKIMSESSIASGIRRIEAMSGKAAEEVLWGDYQELQQVRQLLRTGGEESVAARVQELL 743 Query: 765 EEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 EE + L +L K L L+ + VN + + D + L+S+ L++K Sbjct: 744 EERKILDKKLQDMKLSLLLDKAIGELEQADTVNGCRIFVMKYDDSGADTLRSLGQFLREK 803 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 I G+ +L G + K V E + + NA +L + +A ++ GGGGG+P A +G Sbjct: 804 IGRGVGLLAGEEQGKVTLVGFAGDEAIRECGLNAGELVKKAAAMV-QGGGGGKPGFATAG 862 Query: 879 GPN 881 G N Sbjct: 863 GKN 865 >gi|331091263|ref|ZP_08340104.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404710|gb|EGG84249.1| alanyl-tRNA synthetase 1 [Lachnospiraceae bacterium 2_1_46FAA] Length = 879 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 353/911 (38%), Positives = 523/911 (57%), Gaps = 58/911 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FL+FF+ GH + S SL+P ND +L+ NSGM P K FTGQE P VTT Sbjct: 6 VNELRKMFLDFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRTRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI+ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKREAIKWSWEFLTEVVGLDAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY+EDEEA+++W K G++ ++I + DNFW +GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYEEDEEAYEIWNKEMGIAPERIFKFGKADNFWEHG-SGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QF+ K L + +IDTGMGLER+A+++Q+ Sbjct: 181 GCGRPDCTVGCECDRYMEIWNNVFTQFDNDGKGHYEELEQKNIDTGMGLERLASIVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L + + G +Y E + V+ RVI DH+RS +F+I+DGI+P+N GRGY Sbjct: 241 SIFDVDTLKALREHICTLAGTEYGKEYSKDVSIRVITDHIRSVTFMISDGIMPSNNGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R+LG + L + YPEL + K I +R E+E+F Sbjct: 301 VLRRLLRRACRHGRILGIEGQFLTKLCETVINGSKDGYPELEEKKDAIFNVIRQEEEQFN 360 Query: 360 KTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L ++ + K+ L+G+ AFKLYDT+G PLD+ ++IL +G ID Sbjct: 361 KTIDQGLGILSEMIQEMTEKKETTLSGENAFKLYDTYGFPLDLTKEILEEKGF-DIDEEG 419 Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F ++EEQR +AR ++ +G + ++I S+ T+F+GYD L Sbjct: 420 FKTSMEEQRVKARKARGVSNYMGADATVYDEIDPSV-----TTEFVGYDHLT-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S + + + EIV G+K + ++TPFYA GGQ GD G Sbjct: 467 ---------------YDSDITVLTTENEIVNTLSEGEKGTIFVNRTPFYATMGGQEGDKG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + + K G H V +G ++ L+++ R NHSATHL Sbjct: 512 LITTEHAEFAVEETVKLLGGKVGHVGKVTKGSFTVGDAVNLSVEENGRANTCKNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS +TPD LRFD H +T E+ E+ VN IA+N V+T Sbjct: 572 LQKALKTVLGSHVEQKGSLVTPDRLRFDFVHFSAMTPEEIAKTEELVNAEIAKNNAVITE 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +MN E A A+GA AL G KY + VRVVS+ G S LCGGTHV++TG I I+S Sbjct: 632 VMNIEQAKATGAMALFGEKYEEDVRVVSM-----GDFSKELCGGTHVANTGMITTFKILS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + +G+RRIEA+TG ++ +++L A K + + +VE + E + LQ Sbjct: 687 EAGVASGVRRIEALTGDGVFAYYREMEKELNEAAKVAKATPAQLKDKVEHMLSEIKSLQS 746 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K +L + L ++ + ++ + +VD L+ + D L++K+ G++++ Sbjct: 747 EVEALKSKLAKDALGDVMNQITEVKGIKLLATAVEDVDMNGLRDLGDQLKEKLGEGVVVI 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 S K +++ +VT+ +++ +A +L + A ++ GGGGGGRP+MAQ+GG N Sbjct: 807 AS-SANGKVNLIAMVTDGAMEKGAHAGNLIKGIAALV-GGGGGGRPNMAQAGGKNPAGIP 864 Query: 887 QAIAGVASFLK 897 AIA V L+ Sbjct: 865 DAIAKVQEVLE 875 >gi|311069223|ref|YP_003974146.1| alanyl-tRNA synthetase [Bacillus atrophaeus 1942] gi|310869740|gb|ADP33215.1| alanyl-tRNA synthetase [Bacillus atrophaeus 1942] Length = 878 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 354/916 (38%), Positives = 536/916 (58%), Gaps = 70/916 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AEVRQMFLNFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT E D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGFDE 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +TV+ ED+EA++LW + G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTVHPEDDEAYELWAQKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P SE E +RY+E+WNLVF +F LPK +IDTGMGLERM +V+ Sbjct: 180 Y-GNDPADSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSVI 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANE 295 Q N+D DLF +I+A+E ++ Y +++ N +VI DH+R+ +F ++DG LP+NE Sbjct: 239 QNVPTNFDTDLFMPIIKATETISSEAYGQDDVKNTAFKVIADHIRTVAFAVSDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ YA+ + P M L+P + M YPE+ + + I + +++E+ Sbjct: 299 GRGYVLRRLLRRAVRYAKTININRPFMYDLVPVVAEIMVDFYPEVKEKEEFIAKVIKTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ERF +TL+ GL +L ++ KD+ +++G FKLYDT+G P+++ ++ + Sbjct: 359 ERFHETLNEGLAILSEMIKK-EKDKGSSLISGTDVFKLYDTYGFPVELTEEYAEDEQMK- 416 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F + +E+QR+RAR +GS + +L++ + F+GY + Sbjct: 417 VDHKGFEEEMEKQRARARNARQDVGSMQVQG--GALRDVTVESTFVGYTNTKSD------ 468 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 SS+V+ ++Q GE++EEA G+ ++++ ++TPFYAE+GGQ+GD G Sbjct: 469 ----------------SSVVE-LLQDGELIEEAHEGETIQILLNETPFYAESGGQIGDKG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ITDVQK G VH +VE G L+ M + ++ R + NH+ATHL Sbjct: 512 YLRSAQAVVRITDVQKAPNGQNVHEGLVESGTLQKGMHVTAEVEDHMRSGVIKNHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I +++PV Sbjct: 572 LHQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEVIVNEKIWESIPVSID 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L IVS Sbjct: 632 LKPINEAKEMGAMALFGEKYGDIVRVVQV-----GGYSLELCGGCHVKNTAEIGLFKIVS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I AG RRIEA+TGQ A + Q LK +A LK + +V RV + + ++ Q Sbjct: 687 ESGIGAGTRRIEAVTGQGAYLEMNSQIGLLKQVAGELKTNVKDVPKRVAALQADLKEAQR 746 Query: 773 IHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + +L NV+D+S K+ ++ ++ D L++++D L+ K+ S Sbjct: 747 ENESLLAKLGNAEAGAILSNVKDISGVKV-----LAEKVNAKDMNHLRTMVDELKAKLGS 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +++L G + K ++ VT+DL+D+ +A L + +A+ + GGGGGGRP MAQ+GG Sbjct: 802 AVVVL-GAVQNDKVNISAGVTKDLIDKGLHAGKLVKQAAE-MCGGGGGGRPDMAQAGGKQ 859 Query: 882 GNKADQAIAGVASFLK 897 K A+ V ++K Sbjct: 860 PEKLQDALTSVEEWVK 875 >gi|15894955|ref|NP_348304.1| alanyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824] gi|20532257|sp|Q97IG3|SYA_CLOAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|15024640|gb|AAK79644.1|AE007677_6 Alanyl-tRNA synthetase [Clostridium acetobutylicum ATCC 824] gi|325509092|gb|ADZ20728.1| alanyl-tRNA synthetase [Clostridium acetobutylicum EA 2018] Length = 881 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 340/918 (37%), Positives = 523/918 (56%), Gaps = 68/918 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR ++L FF+K H LPS SLIP ND +L+ N+GM P K FTG + P VTT Sbjct: 6 LNDIRESYLSFFEKKEHLRLPSFSLIPKNDKSLLLINAGMAPLKPYFTGLQTPPKTRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T+RH TFFEMLGNFSFG YFKE I AW+ +T+ + Sbjct: 66 CQKCIRTG----DIENIGKTSRHGTFFEMLGNFSFGDYFKEEVISWAWEYITEVLKFPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 R+YIT+Y +D+EAFK+W + +G+ +I R DNFW +GPCGPCSE+ FD+ E Sbjct: 122 RIYITIYLDDDEAFKIWTEKAGVDPSRIFRFGKEDNFWEHG-SGPCGPCSEMHFDRRE-K 179 Query: 184 PGGLPGSS-----EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 P + ++ + IE WNLVF QF++ L +IDTGMGLER+AT++Q Sbjct: 180 PDLIKTREKFIELQDKDEVIEFWNLVFTQFDKDEDGNYNKLKNPNIDTGMGLERIATIMQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 + ++ID + ++ A ++ +KY N N V+ R+I DH+RS +F+I+DGILP+NEG Sbjct: 240 NTDSIFEIDTIREVLDAVCKICNVKYGENHKNDVSLRIITDHIRSVTFMISDGILPSNEG 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + + LG + + L + AY EL + + I+ + E++ Sbjct: 300 RGYVLRRLLRRAARHGKTLGIEKTFLCGLCDVVIKNSKGAYKELEEKQDYIKNVIEIEEK 359 Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TLD G+ +L + L ++++G+ AF+LYDT+G P+++ Q+IL +G+ ID Sbjct: 360 RFDETLDSGMEILKNYIDELSLENKKVMSGEKAFRLYDTYGFPVELTQEILEEKGIE-ID 418 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 + F+ +E+Q++RAR A G K+ L E T+F+GY+ Sbjct: 419 MNDFHSEMEKQKNRARDAREESNYMGKEIKLIDKLPESV-TTKFVGYN------------ 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + S V+ +++ E V G+ VV ++TPFYAE GGQ+GD G Sbjct: 466 -----------STSTDSKVEVLIKDDEFVSTINEGESGIVVTEETPFYAEMGGQIGDKGI 514 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G ++ D + G +H V +G + ++ L ++Y+ R+ + NH+ATH+L Sbjct: 515 IFGKNGEAKVVDCKNNISGKIIHIVQVVKGSIEKNENVTLEVNYKKRKDICKNHTATHML 574 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL ++GSH++Q+GS + + LRFD TH +T E+ +E VND I V T I Sbjct: 575 QAALKKVVGSHINQSGSYVDNERLRFDFTHFTALTDEEILKVEAMVNDEIMAAYDVKTDI 634 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ ++A +GA AL KY +RVRVVSV G S LCGGTHV+++GEI L I+SE Sbjct: 635 MSVDEAKKTGAMALFDEKYGNRVRVVSV-----GDFSRELCGGTHVNNSGEIGLFKIISE 689 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRK 769 S + AGIRRIEAITG+ A + D ++++ LK S+ +++ ++ E+ E+ ++ Sbjct: 690 SGVAAGIRRIEAITGKEAVRYTEENDNLIRNIEQELKCSKKDILNKINQYHSELKEKEKE 749 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIM 826 + ++ K KL E+ + +V+ + ++ SEV L+ + D ++ KI G+++ Sbjct: 750 INIL--KGKLASGFEENILSSVKEVSGVKYVASEVKGISGDTLRELCDKVRNKIDDGMVL 807 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGP 880 L EK V + NAV KV+ GG GGGRP MAQ+GG Sbjct: 808 LASKDGEKVQFVAMASK-------NAVKKGVHCGKVIKEVASMCGGNGGGRPDMAQAGGK 860 Query: 881 NGNKADQAIAGVASFLKK 898 +G K + A+ V + ++K Sbjct: 861 DGEKLETALKEVGNIMEK 878 >gi|157738295|ref|YP_001490979.1| alanyl-tRNA synthetase [Arcobacter butzleri RM4018] gi|205829978|sp|A8EWI6|SYA_ARCB4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157700149|gb|ABV68309.1| alanyl-tRNA synthetase [Arcobacter butzleri RM4018] Length = 851 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 358/906 (39%), Positives = 519/906 (57%), Gaps = 73/906 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +LEFF+ GHE++ S L+P +DPTLMFTN+GMV FK+IFTG P + T+ Q Sbjct: 3 IRKEYLEFFRSKGHEVISSMPLVP-DDPTLMFTNAGMVQFKDIFTGAVPTPKNKRATSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 CVRAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +T L +L Sbjct: 62 LCVRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFVTVNLALPIDKL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184 ++TV++ D+EAF +W K ++ +I+R DNFWSM +TG CGPCSEIF+DQGE Sbjct: 122 WVTVHNNDDEAFDIWSKY--INPSRIMRFGDKDNFWSMGDTGACGPCSEIFYDQGEENFN 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + NN+ Sbjct: 180 GEEDYMGGDGDRFLEIWNLVFMQYERTADGKLNPLPKPSIDTGMGLERVIAIKEGVFNNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D FK +I+ E+++ NI ++RVI DHLR+ SF+++ GIL NEGR YVLRRI Sbjct: 240 DSSNFKPIIKKIEEISSKNATSENIGSYRVIADHLRACSFMLSQGILFGNEGRPYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + L+G+ +P M LL L MG Y EL++ K IEE L E++RF KT+D Sbjct: 300 LRRAVRHGYLIGFRKPFMAKLLDTLIEIMGGHYTELVENKNFIEEQLTLEEDRFFKTIDL 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ L + L +I +G AFKLYDT+G PLD+ +D+L RGL +D+ F++ + Sbjct: 360 GMSLFNEELEKT--KDIFSGVTAFKLYDTYGFPLDLTEDMLRDRGLK-VDLAKFDELMNN 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q++ A+A G G + E + L EK+G+ +F+GY+ Sbjct: 417 QKAMAKAAWKGSGDTSNEGDFKQLLEKFGSNEFVGYN-------------------NTTY 457 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 + + +++ ++ +I+E+ +G V+ D+TPFYA +GGQ GD G A+ D + I Sbjct: 458 KSKIIALLDEHFKEVKILEKDSTGW---VMLDKTPFYATSGGQNGDIG-ALEDNKHIAIV 513 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 + K G+ + V L+ S+ + NR +++ +HSATHLL AL +LG Sbjct: 514 EETTKFHGLNLSKVKVVNSSLKQGESVDAIV--VNRNEVAKHHSATHLLQSALKIVLGDT 571 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 VSQ GS LRFD T+ K +T ++ +ED VN +IA+ + + E A GA Sbjct: 572 VSQAGSLNDASRLRFDFTYPKAMTKEQIDEVEDLVNSMIARGISGNVEELPIEQAKKKGA 631 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 A+ G KY D VRVVS +ED V CGGTHV +T +I YIV ES + AG+RRIE Sbjct: 632 IAMFGEKYGDVVRVVS--FEDVSVE---FCGGTHVRNTADIGSFYIVKESGVSAGVRRIE 686 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784 A+ G A +K ++ +++ ++ EI E + +I +KL+ ++ Sbjct: 687 AVCGTAA-----------------IKYTK-DIISKMNEIQAEVKNSDVILGIKKLKEQIK 728 Query: 785 DL------SCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 DL S K + +N I+S V++ +LK ++D + + I L+ Sbjct: 729 DLKKEIETSQSKTSSPIEETIINDTKVIVSVVENGDLKKIVDDTKNANEKVAIFLLQAKD 788 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +K VLIV + A D + A ++ GGGGGGRP AQ+GG + +K +A Sbjct: 789 DK---VLIVAGSKNTN-IKAGDWIKNIAPIV-GGGGGGRPDFAQAGGKDTSKIQEAKTKA 843 Query: 893 ASFLKK 898 + K+ Sbjct: 844 LDYAKE 849 >gi|110597674|ref|ZP_01385959.1| alanyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031] gi|110340794|gb|EAT59271.1| alanyl-tRNA synthetase [Chlorobium ferrooxidans DSM 13031] Length = 901 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 350/927 (37%), Positives = 527/927 (56%), Gaps = 78/927 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM FK++F + Y Sbjct: 17 NSREIRQSFLDFFAQKGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLDKGTRPYNRAA 76 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+L+T + L Sbjct: 77 DTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAITWAWELMTGVWKLPA 136 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY TVY +D+E+F++WK + +S + I+R DNFW M ETGPCGPCSEI D + Sbjct: 137 DRLYATVYQDDDESFQIWKDHTSISPEHILRFGDKDNFWEMGETGPCGPCSEIHIDLTDD 196 Query: 183 IPG-GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G L + R IE+WNLVF+Q+ +Q+ LP +DTGMG ER+A V+Q K+ Sbjct: 197 ASGKSLVNVGD--YRVIELWNLVFIQYNRQSDGRLEPLPNKHVDTGMGFERVAAVMQGKS 254 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+FK L ++TG++Y + H RVI DH R+ +F ++DG +P+NEGR Sbjct: 255 SNYDTDVFKPLFDRITEITGVRYGASMDEPHDIAMRVIADHARTLTFALSDGAMPSNEGR 314 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ Y++ LGY EP++ L+ L MG +PEL + + + + +RSE+E Sbjct: 315 GYVLRRILRRALRYSKNLGYNEPILHQLVGTLADSMGDVFPELKKQRDTVSKIIRSEEES 374 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ + + V+S + K ++ G AFKLYDT+G P D+ + + GL +D Sbjct: 375 FIVTLDRGIEIFNDVVSKVRSAKGTVIKGVDAFKLYDTYGFPFDLTRLMASDEGLQ-VDG 433 Query: 416 ISFNQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F ++EQ++RARA + ++ +WFS + AT F+GY+ L Sbjct: 434 EGFEHCMQEQKTRARADRKEKHQIEEDGSQWLWFSDQH---ATSFVGYEQLELPV----- 485 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 R + C+ + +K+ ++ D+TPFYAE+GGQ+GD G Sbjct: 486 RIIACKH---------------------------AKEKLLILLDKTPFYAESGGQVGDRG 518 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT------------EMSLVLTIDYQNR 580 RLQ+TD K + I IL T ++S ++D+ R Sbjct: 519 WIETASYRLQVTDTVKDGDAIVHVVTAAFDKILDTAVNPADLTIDEGQLSAEASVDHHIR 578 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NH+ATHLLH AL ILG HV Q GS + P+ LRFD +H ++ AE+ +E +VN Sbjct: 579 QDTERNHTATHLLHGALRRILGQHVQQKGSYVNPERLRFDFSHFSKMSDAEIARVEASVN 638 Query: 641 DIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 + I + V + +DAIA GA A G KY D VRVV V G+ S LCGGTHV Sbjct: 639 EEIRRAEEVQKHADIPYDDAIAKGALAFFGDKYADLVRVVEVP----GI-SVELCGGTHV 693 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN--VV 757 + G I L IVSESS+ +G+RRIEA+TG+ A L + +L+ + LK ++G+ V Sbjct: 694 DNIGRIGLFKIVSESSVASGVRRIEALTGKSAEKLLWQEYAELQQIRQLLK-AKGDEPVA 752 Query: 758 GRVEEIWEEYRKLQL-IHAKR---KLQ-LNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812 R+ E+ + ++L+ +H R LQ L+V+ S +++ ++ ++ D L+S Sbjct: 753 SRIVELMDARKELEKELHEIRIGSLLQSLSVDLQSAPEVSGCKLLAKVVEGADGDALRSA 812 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGG 870 AL++ + +L + ++ K S+ + ++ + +D +L +V GGGGG Sbjct: 813 GLALREAVPCAAGLLCSV-QDGKVSLAVFASDKAVKEL-GIDAGKLIREVAQHVQGGGGG 870 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897 +P A +GG N + ++A+ + +K Sbjct: 871 KPEFATAGGKNPDGVNKALEAFTTAVK 897 >gi|315636586|ref|ZP_07891820.1| alanine--tRNA ligase [Arcobacter butzleri JV22] gi|315479095|gb|EFU69794.1| alanine--tRNA ligase [Arcobacter butzleri JV22] Length = 851 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 358/906 (39%), Positives = 519/906 (57%), Gaps = 73/906 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +LEFF+ GHE++ S L+P +DPTLMFTN+GMV FK+IFTG P + T+ Q Sbjct: 3 IRKEYLEFFRSKGHEVISSMPLVP-DDPTLMFTNAGMVQFKDIFTGAVPTPKNKRATSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 CVRAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +T L +L Sbjct: 62 LCVRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFVTVNLALPIDKL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184 ++TV++ D+EAF +W K ++ +I+R DNFWSM +TG CGPCSEIF+DQGE Sbjct: 122 WVTVHNNDDEAFDIWSKY--INPSRIMRFGDKDNFWSMGDTGACGPCSEIFYDQGEENFN 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + NN+ Sbjct: 180 GEEDYMGGDGDRFLEIWNLVFMQYERTADGKLNPLPKPSIDTGMGLERVIAIKEGVFNNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D FK +I+ E+++ NI ++RVI DHLR+ SF+++ GIL NEGR YVLRRI Sbjct: 240 DSSNFKPIIKKIEEISSKNATSENIGSYRVIADHLRACSFMLSQGILFGNEGRPYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + L+G+ +P M LL L MG Y EL++ K IEE L E++RF KT+D Sbjct: 300 LRRAVRHGYLIGFRKPFMAKLLDTLIEIMGGHYTELVENKNFIEEQLTLEEDRFFKTIDL 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ L + L +I +G AFKLYDT+G PLD+ +D+L RGL +D+ F++ + Sbjct: 360 GMSLFNEELEKT--KDIFSGITAFKLYDTYGFPLDLTEDMLRDRGLK-VDLAKFDELMNN 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q++ A+A G G + E + L EK+G+ +F+GY+ Sbjct: 417 QKAMAKAAWKGSGDTSNEGDFKQLLEKFGSNEFVGYN-------------------NTTY 457 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 + + +++ ++ +I+E+ +G V+ D+TPFYA +GGQ GD G A+ D + I Sbjct: 458 KSKIIALLDEHFKEVKILEKDSTGW---VMLDKTPFYATSGGQNGDIG-ALEDNKHIAIV 513 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 + K G+ + V L+ S+ + NR +++ +HSATHLL AL +LG Sbjct: 514 EETTKFHGLNLSKVKVVNSSLKQGESVDAIV--VNRNEVAKHHSATHLLQSALKIVLGDT 571 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 VSQ GS LRFD T+ K +T ++ +ED VN +IA+ + + E A GA Sbjct: 572 VSQAGSLNDASRLRFDFTYPKAMTKEQIDEVEDLVNSMIARGISGNVEELPIEQAKKKGA 631 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 A+ G KY D VRVVS +ED V CGGTHV +T +I YIV ES + AG+RRIE Sbjct: 632 IAMFGEKYGDVVRVVS--FEDVSVE---FCGGTHVRNTADIGSFYIVKESGVSAGVRRIE 686 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784 A+ G A +K ++ +++ ++ EI E + +I +KL+ ++ Sbjct: 687 AVCGTAA-----------------IKYTK-DIISKMNEIQAEVKNSDVILGIKKLKEQIK 728 Query: 785 DL------SCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 DL S K + +N I+S V++ +LK ++D + + I L+ Sbjct: 729 DLKKEIETSQSKTSSPIEETIINDTKVIVSVVENGDLKKIVDDTKNANEKVAIFLLQAKD 788 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +K VLIV + A D + A ++ GGGGGGRP AQ+GG + +K +A Sbjct: 789 DK---VLIVAGSKNTN-IKAGDWIKNIAPIV-GGGGGGRPDFAQAGGKDTSKIQEAKTKA 843 Query: 893 ASFLKK 898 + K+ Sbjct: 844 LDYAKE 849 >gi|256962036|ref|ZP_05566207.1| alanyl-tRNA synthetase [Enterococcus faecalis Merz96] gi|293383058|ref|ZP_06628976.1| alanine--tRNA ligase [Enterococcus faecalis R712] gi|293388219|ref|ZP_06632740.1| alanine--tRNA ligase [Enterococcus faecalis S613] gi|312907353|ref|ZP_07766344.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 512] gi|312909969|ref|ZP_07768817.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 516] gi|256952532|gb|EEU69164.1| alanyl-tRNA synthetase [Enterococcus faecalis Merz96] gi|291079723|gb|EFE17087.1| alanine--tRNA ligase [Enterococcus faecalis R712] gi|291082403|gb|EFE19366.1| alanine--tRNA ligase [Enterococcus faecalis S613] gi|310626381|gb|EFQ09664.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 512] gi|311289927|gb|EFQ68483.1| alanyl-tRNA synthetase [Enterococcus faecalis DAPTO 516] Length = 880 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 358/921 (38%), Positives = 526/921 (57%), Gaps = 79/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF+D+GE Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--GDNFWDIG-AGPSGPDTEIFYDRGEE 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + K + L+G + FKLYDT G P+++ +++ GL Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +E QR RAR A S G + +K + ++F+GY Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT+ V I+Q +V EA +G E++F +TPFYAE GGQ+ Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509 Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + DV+K G F+H V + ++ L +D + R ++ NH Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + + Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I + Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740 Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817 ++ K QL N + K + DVN + +I ++V+ K +L+ + D + Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWK 799 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875 +K S +++L ++++K S+L +T+D+ + A DL + ++ KV GGGGGRP MA Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKV--DGGGGGRPDMA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q+GG N A+A V ++L Sbjct: 857 QAGGKNPAGIADALAEVENWL 877 >gi|304440318|ref|ZP_07400207.1| alanine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371070|gb|EFM24687.1| alanine--tRNA ligase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 874 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 345/909 (37%), Positives = 519/909 (57%), Gaps = 64/909 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FLEFF+ H +L S LIP D +L+ +GM P K FTG+ P + V+T QK Sbjct: 9 IRKEFLEFFKSKDHLILKSFPLIPKQDKSLLLIGAGMAPMKKYFTGELTPPSKRVSTCQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R G D++NVG T+RH TFFEMLGNFSFG YFK AI AW+ LT+ +L + +L+ Sbjct: 69 CIRTG----DIENVGLTDRHATFFEMLGNFSFGDYFKHEAISWAWEFLTEHLELPKDKLW 124 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 +TV+ EDEEA+K+W+ + ++I+++ DNFW + E GP GPCSEI+ D+GE G Sbjct: 125 VTVFYEDEEAYKIWRDEIHIPEERIVKMGKEDNFWEL-EVGPSGPCSEIYVDRGEEYGCG 183 Query: 187 LPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P E +R+IE+WNLVF QF++ L +IDTGMGLER+ATVLQ N + Sbjct: 184 DPDCKPGCECDRFIEVWNLVFTQFDKDEAGVYHPLAHPNIDTGMGLERIATVLQNTNNIF 243 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 +ID K++I+ E+++ KY+ +N ++ RVI DH R+ +F+I+D + P+NEGRGYVLR Sbjct: 244 EIDAIKNIIEKIEELSNYKYKTDNKKDISVRVITDHARAMTFMISDTVRPSNEGRGYVLR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RRA + RLLG + + + Y +L + + I+E +R E+E+F +T+ Sbjct: 304 RLIRRAARHGRLLGIKRAFLSEIADLIIDSWSVEYDDLKENREKIKEVIRIEEEKFLETI 363 Query: 363 DRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 D+G+ +L+ L L K+ ++L GD AFKLYDT+G P+D+ +IL G +D F++ Sbjct: 364 DQGMNILNSYLEELDKENTKVLPGDKAFKLYDTYGFPIDLTIEILEDSGYE-VDRKGFDE 422 Query: 421 ALEEQRSRARA----HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKV 475 +EEQR RAR +G S +E + L T+F GY D SK ++ Sbjct: 423 NMEEQRRRARESRDHDQIGWTSKESEHYYEDLN-----TEFTGYSDDESDSKIVR----- 472 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 IV GE+V+ A GQ+ V D+TPFY E GGQ+GD G Sbjct: 473 -------------------IVLNGEVVDSACEGQRAIFVLDKTPFYGEGGGQVGDIGTVT 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + I D +K ++GI + V GI + + ID + R + NHS THLLH Sbjct: 514 SDNFEIDIIDTKKTSKGIVLMIGDVTAGIAKVGSDVHTEIDVERRNNIRRNHSVTHLLHK 573 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV+Q GS + D +RFD TH + I+ +LK IE+ VN I + LPV T I N Sbjct: 574 ALKEVLGNHVNQAGSLVRDDYMRFDFTHFEAISQEDLKKIEEIVNKEIFRALPVETIITN 633 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A GA L KY D VRVV + G S LCGGTHV +T EI + I+ E Sbjct: 634 PKEAAELGAVGLFEEKYGDIVRVVKM-----GDFSIELCGGTHVKNTSEIGMFKILQEGG 688 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQ 771 I +G+RR+E ITG +L E++ ++ +K ++ + ++E E+ E ++++ Sbjct: 689 ISSGVRRVECITGPAVYKYLNENIEQIDRISKLVKANKSEIEHKIETTQNELKEAQKEIE 748 Query: 772 LIHAKRKLQLNVEDLSCHKIA-DVNF-MSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 +I K K + V+++ K D F + + +D L+ + D ++ K+ S +++ Sbjct: 749 II-KKDKAKSEVDNVLDTKFEIDGGFGLVYKFENMDVSTLRDLADTVKDKLGSAVVVFST 807 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ E K + + + ++ ++NA + R AK+ GG GGGRP MA +G + K D+A+ Sbjct: 808 VN-EGKLNFVAAASNEISKKYNAGSIVREVAKIC-GGSGGGRPTMATAGASDLTKVDEAL 865 Query: 890 AGVASFLKK 898 +F KK Sbjct: 866 ----NFAKK 870 >gi|297529280|ref|YP_003670555.1| alanyl-tRNA synthetase [Geobacillus sp. C56-T3] gi|297252532|gb|ADI25978.1| alanyl-tRNA synthetase [Geobacillus sp. C56-T3] Length = 878 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 359/915 (39%), Positives = 526/915 (57%), Gaps = 68/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P + Sbjct: 7 AQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPENPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSDKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +TV+ EDEEA+ +W+ GL ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E +RY+E+WNLVF QF LPK +IDTGMGLERM ++L Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q+ N++ DLF +I+A+EQ+ G +Y + + V +VI DH+R+ +F I DG LP+NE Sbjct: 239 QDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAIGDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I +R+E+ Sbjct: 299 GRGYVLRRLLRRAVRYAKHIGIERPFMYELVPVVGEIMHDYYPEVKEKADFIARVIRTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL--- 410 ERF +TL GL +L V+ + +++ G+ AF+LYDT+G P+++ ++ G+ Sbjct: 359 ERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEYAAEAGMTVD 418 Query: 411 -AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 AG + Q + +R S+ + G L + ++F+GYD L + Sbjct: 419 HAGFEREMERQRERARAARQDVDSMQVQGGV-------LGDIKDESRFVGYDELVAA--- 468 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S V AIV+ G +VEE +G++ +++ D TPFYAE+GGQ+ Sbjct: 469 --------------------STVIAIVKDGRLVEEVKAGEEAQIIVDVTPFYAESGGQIA 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + + DVQK G +H IVERG ++ +D R ++ NH+A Sbjct: 509 DQGVFESETGTAVVKDVQKAPNGQHLHAIIVERGTVKKGSRYTARVDEAKRMRIVKNHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I ++LPV Sbjct: 569 THLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVNEQIWKSLPV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 E+A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 629 DIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTSAIGLFK 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IVSES I AG RRIEA+TG+ A + Q L+ A LK S + R++ ++ E ++ Sbjct: 684 IVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARLDGLFAELKE 743 Query: 770 LQLIH---AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823 L+ + A R + E L+ ++ DVN + + ++V D +L+++ D L++K+ + Sbjct: 744 LERENESLAARLAHMEAEHLT-RQVKDVNGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ K ++ VT+DL+ + F+A L + A GGGGGGRP +AQ+GG + Sbjct: 803 VIVLAS-AQGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRC-GGGGGGRPDLAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 +K +A+ V +++K Sbjct: 861 SKVGEALGYVETWVK 875 >gi|241890033|ref|ZP_04777331.1| alanyl-tRNA synthetase [Gemella haemolysans ATCC 10379] gi|241863655|gb|EER68039.1| alanyl-tRNA synthetase [Gemella haemolysans ATCC 10379] Length = 873 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 339/909 (37%), Positives = 520/909 (57%), Gaps = 73/909 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF + GH++ PS+SL+P +DP+L++ NSG+ K F G+E P +T Sbjct: 7 TQIRRMYLDFFVEKGHKIEPSASLVPIDDPSLLWINSGVATLKKYFDGREIPENPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK A+ AW+ LT E L++ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKNEAVPWAWEFLTSEKWLGLEK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 +L +T++ ED EA+ LWK + GL ++IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 EKLSVTIHPEDTEAYDLWKNVIGLPEERIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEE 179 Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E +RY+E+WN+VF Q+ LP +IDTGMGLER Sbjct: 180 ADTWSPKEEMYPGG------ENDRYLEVWNVVFSQYNHNADGTYSELPAKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 + +VLQ+ N+D DLF +I+ E+++G KY V +VI DH+R+ F IADG Sbjct: 234 IVSVLQDVPTNFDTDLFIPIIREIEKLSGAKYGVSTEQDVAFKVIADHIRTVVFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGY+LRR++RRA+ +A++LG M L + M YP + ++ +++ Sbjct: 294 LPSNEGRGYILRRLLRRAVRFAKVLGLNNSFMYKLTDVVAEIMVDYYPNVKESASFVKDV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E++RF +TL G +L+ + + + KD ++++G AFKLYDT G P+++ ++ Sbjct: 354 ILKEEDRFHETLHEGETILNNIANEV-KDTTKVISGKDAFKLYDTFGFPIELTEEYAEEL 412 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +DI FN+ +E+Q+ RAR+ S + +S + G ++F GY L Sbjct: 413 GLT-VDIDGFNEEMEKQKERARSSRQDDSSMQVQSDLYS--KIVGDSEFTGYTSL----- 464 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV-EVVFDQTPFYAEAGGQ 527 ++ KVL AIV + + + E G++V +VVF++TPFYAE+GGQ Sbjct: 465 -TDEGKVL-----------------AIVDREDNLLENYKGEEVVKVVFERTPFYAESGGQ 506 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G +G + ++ DV+K + +H V G L L ++ R + NH Sbjct: 507 VADKGLVTAEGFKAEVVDVKKLPDKRHIHFVKVVEGELVVGKEYKLEVNRPYRLNVEKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL+ AL +GSH+ Q GS +T + LRFD+TH P+T E++ +E VN I L Sbjct: 567 TATHLLNEALRHEVGSHIKQAGSLVTDEKLRFDITHFAPLTKEEIEKVEQEVNKQIWNAL 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + T M +A GA AL G KY D VRVVS+ G +S LCGGTH ++ E+ + Sbjct: 627 EIKTEEMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNVNSAEVGI 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSES + AG+RRIEA+TG+ A +L Q+E L+S+ K + NVV +V + + Sbjct: 682 FKIVSESGVAAGVRRIEALTGKAAYEYLREQEETLRSVEKLTKANSSNVVEKVSSLQSDI 741 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKI 820 +KL K LQ + + + + + VN ++ ++ + LK ++D + K+ Sbjct: 742 KKLS--KEKESLQQKIANAELNNLVNNIKEVNGVNVLTSVVESENMNHLKQLVDNAKSKL 799 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 ++ +I ++ E K + ++ V + + D++NA L + A V G GGGRP MAQ+G Sbjct: 800 ENYVIAFASVN-EDKVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMAQAGAK 857 Query: 881 NGNKADQAI 889 N + D+A Sbjct: 858 NKDNIDKAF 866 >gi|295706696|ref|YP_003599771.1| alanyl-tRNA synthetase [Bacillus megaterium DSM 319] gi|294804355|gb|ADF41421.1| alanyl-tRNA synthetase [Bacillus megaterium DSM 319] Length = 877 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 361/915 (39%), Positives = 526/915 (57%), Gaps = 68/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF++ GH++ PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AQVRQMYLDFFKEKGHDVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AIQ AW+ LT K D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIQWAWEFLTSDKWIGFDA 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TV+ EDEEAFK+W + G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLSVTVHPEDEEAFKIWNEKMGVPKERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+EIWNLVF QF LPK +IDTGMGLERM +V Sbjct: 180 YGNDLTDPELYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294 +Q+ N+D DLF +I+A+E ++G KY N+ + +VI DH+R+ +F + DG LP+N Sbjct: 238 IQDVQTNFDTDLFMPIIEATENISGAKYRTNDEQDTAFKVIADHIRTVTFAVGDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+ + I+ +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKKLNINRPFMYELVPVVGEIMVDFYPEVKEKTDFIQRVVKNE 357 Query: 355 DERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL+ GL +L V+ + + G+ F+LYDT+G P+++ ++ + Sbjct: 358 EERFHETLNDGLAILATVIKKEKAQNSDTVQGEDVFRLYDTYGFPVELTEEYAEDENMK- 416 Query: 413 IDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 ID F + +E QR RAR + S+ + G L E A++F+GYD Sbjct: 417 IDHAGFEREMEAQRERARAARQDSSSMQVQGGV-------LGEVTVASEFVGYD------ 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 N V ++V+AI+ GE+V+ A +G + +V+ TPFYAE+GGQ Sbjct: 464 -----------------KNEVETVVEAIIVDGELVDRAEAGTEAQVILSHTPFYAESGGQ 506 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G ++ DVQK G V V G L + T+D +NR + NH Sbjct: 507 IADQGTIQSAAGTAEVKDVQKAPNGQNVQTVAVTNGELVKGETYTATLDEENRSAIVKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL LG+HV+Q GS +T D LRFD +H +T EL+ IE VN+ I ++ Sbjct: 567 TATHLLHQALKDTLGTHVNQAGSLVTADRLRFDFSHFGQVTQEELEKIEQIVNEKIWDSI 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V ++A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 627 SVQIENKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSVIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSES I AG RRIEA+TG+ A + Q LK A+ +K + ++VGRVE + EE Sbjct: 682 FKIVSESGIGAGTRRIEAVTGKAAYQLMNDQVGLLKEAAAKVKSNPRDLVGRVEGLLEEI 741 Query: 768 RKLQLIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 R LQ + +L N+E + I VN ++ ++ D L++++D L++K++S Sbjct: 742 RNLQRENDSLSTKLGNIEAGNLVDRVQNINGVNVLAAKVNATDMNNLRAMVDDLKQKLES 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L E K +++ VT+DL+ + + + GGGGGGRP MAQ+GG + Sbjct: 802 AVIVLASPQGE-KVNIIAGVTKDLIAKGHHAGKLVKEVATICGGGGGGRPDMAQAGGKDA 860 Query: 883 NKADQAIAGVASFLK 897 ++ ++A+ V ++K Sbjct: 861 SQIEKALGTVEEWVK 875 >gi|291529066|emb|CBK94652.1| alanyl-tRNA synthetase [Eubacterium rectale M104/1] Length = 886 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 350/913 (38%), Positives = 512/913 (56%), Gaps = 58/913 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P + VTT Sbjct: 7 VNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPPRRRVTT 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ L++ Sbjct: 67 CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVLGLEKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFF 177 RLY ++Y ED+EAF +W K G+ D+I R + DNFW GPCGPCSEI++ Sbjct: 123 RLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGPCSEIYY 181 Query: 178 DQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 D+GE G P + +R++E+WN VF QF L +IDTGMGLER+A Sbjct: 182 DRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMGLERLAV 241 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293 V+Q+ + +DID K + +++G KY + + V+ R+I DH+RSS+FLI+DG++P+ Sbjct: 242 VMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLISDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA + R LG + + + E YPEL + K I + L Sbjct: 302 NEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFILKVLTQ 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KT+D+GL +L + H+ D ++L+G+ AFKLYDT+G P+D+ +IL +G Sbjct: 362 EEEKFAKTIDQGLGILADMEEHMKADGVKVLSGENAFKLYDTYGFPVDLTAEILEEKGFT 421 Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 D F +E QR +AR A G ++ + + T+F GYD L + Sbjct: 422 -YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEI-TTEFTGYDKLTDT---- 475 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + ++VE G K V+ TPFYA GGQ GD Sbjct: 476 -------------------AEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMGGQQGD 516 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + + D K + H V G++RT L++D + R NHSAT Sbjct: 517 KGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCRNHSAT 576 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL +LG+HV Q GS + RFD +H +T+ ELK +ED VN+ I + + V Sbjct: 577 HLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINEAIEVR 636 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM ++A +GA AL G KY ++VRVVS+ G S CGGTHV +T +I + I Sbjct: 637 TDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDIKVFKI 691 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SES + AG+RRIEAITG ++ +++L+ A +K + N+ R+E + E + L Sbjct: 692 LSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLMAEMKAL 751 Query: 771 QLIHAKRKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + K + + L ++ DVN ++ + VD L+ + D+L++K+ G+I Sbjct: 752 QSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKLGEGVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGN 883 +L S E K +++ + T+ + +A +L + +++KV GGGGGRP+MAQ+GG N Sbjct: 812 VLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVG--GGGGGRPNMAQAGGKNPA 868 Query: 884 KADQAIAGVASFL 896 AIA V L Sbjct: 869 GIPDAIASVKDAL 881 >gi|229828473|ref|ZP_04454542.1| hypothetical protein GCWU000342_00535 [Shuttleworthia satelles DSM 14600] gi|229793067|gb|EEP29181.1| hypothetical protein GCWU000342_00535 [Shuttleworthia satelles DSM 14600] Length = 921 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 345/915 (37%), Positives = 518/915 (56%), Gaps = 51/915 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R +L+FF+ GH ++ S SL+P ND +L+ N+GM P K FTGQE P + VTT Sbjct: 35 VNQLRRMYLDFFESKGHLVMKSFSLVPHNDDSLLLINAGMAPLKPYFTGQEIPPRRRVTT 94 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ L+ Sbjct: 95 CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKREAIHWSWEFLTRVLKLEPD 150 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFF 177 RLY T++ +D+EA+++W + G++ D + R + DNFW +GPCGPCSEI++ Sbjct: 151 RLYPTIFIDDDEAYEIWTREVGVAPDHVYRFGKDPETGASDNFWEHG-SGPCGPCSEIYY 209 Query: 178 DQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 D+GE P + G EG+R++EIWN VF QF L + +IDTGMGLER+A Sbjct: 210 DRGEKYGNGPDDVMGG--EGDRFMEIWNNVFTQFNNDGHGNYTELAQKNIDTGMGLERLA 267 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ ++ID K + ++G YE N + ++ R+I DH+RS++F+I+DGI+P Sbjct: 268 VVMQDVETVFEIDTMKAIRDEVCALSGKTYEANASDDISIRLITDHIRSTTFMISDGIMP 327 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA + R+LG + M L + E YPEL + + I L Sbjct: 328 SNEGRGYVLRRLIRRASRHGRMLGISGEFMARLADVVIRESRDGYPELAEKQEFIRRVLT 387 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+ +F T+D+GL +L + L + +L+G AF+LYDT+G P+D+ +IL +G+ Sbjct: 388 EEERKFNATIDQGLAMLAQLEDQLSARGERVLSGADAFRLYDTYGFPVDLTAEILEEKGM 447 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 D F A+EEQR++AR E + + ++ F+GYD L S + Sbjct: 448 T-YDREGFAAAMEEQRAKARGARKASNYMGKEATVYDDIDNSISSSFVGYDKLEASSKIS 506 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 VL + + A + GE+V+ G + V+ D+TPFY GGQLGD Sbjct: 507 ----VLT-----------TEVNPAEDKYGELVDALTDGSRGTVIVDETPFYGTMGGQLGD 551 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G ++ + G H + G+L+ + L +D R ++ NHSAT Sbjct: 552 SGLIETAEGTFRVDETIHLLGGRIGHVGQMISGMLKVGDRVTLQVDADRRANIARNHSAT 611 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV Q GS + LRFD H +++ E++ +ED VN+ IA ++PVV Sbjct: 612 HLLHRALREVLGDHVQQKGSYVDDKKLRFDFVHFSAMSTEEIRKVEDLVNERIAADIPVV 671 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM++EDA +GA AL G KY D VRVV + G +S+ LCGGTHV TG+I + Sbjct: 672 TEIMSQEDAKKTGAMALFGEKYGDEVRVVEM-----GDYSTELCGGTHVGRTGKIQAFKV 726 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE AG+RRIEA+TG ++ + +L A+ K ++V ++ + EE + L Sbjct: 727 ISEVGSSAGVRRIEALTGPAVFAYYEDIERELNEAATAAKTKPSDLVEKIGHMQEEIKGL 786 Query: 771 QL------IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + A ++ NVED + +I V F++ + VD L+ + D L+ K+ GI Sbjct: 787 EAELESMKAAAAKEALGNVED-AVKEIKGVKFLAKALEGVDMNGLRDLGDQLKAKLGEGI 845 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++L + + K ++ TE +A +L + A ++ GGGGGGRP+MAQ+GG N Sbjct: 846 VLLAS-ANDGKVVLMATATEGAQKAGAHAGNLIKGIAGLV-GGGGGGRPNMAQAGGKNPA 903 Query: 884 KADQAIAGVASFLKK 898 A+A L++ Sbjct: 904 GIPAALAEAERVLEE 918 >gi|315651872|ref|ZP_07904875.1| alanine--tRNA ligase [Eubacterium saburreum DSM 3986] gi|315485874|gb|EFU76253.1| alanine--tRNA ligase [Eubacterium saburreum DSM 3986] Length = 885 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 348/906 (38%), Positives = 505/906 (55%), Gaps = 80/906 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ IR FLEFF+ GH ++ S SL+P ND +L+ NSGM P K FTGQE P + V T Sbjct: 12 VNQIRKKFLEFFESKGHLVMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVCT 71 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD Sbjct: 72 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVAGLDPN 127 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF++W K G+ AD+I + DNFW E GPCGPCSE+++D+GE Sbjct: 128 RLYPSVYLDDDEAFEIWNKEIGIPADRIYKFGKEDNFWEHGE-GPCGPCSEVYYDRGEKY 186 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + + +RY+EIWN VF QF K L + +IDTGMGLER+A LQ+ Sbjct: 187 GCGKPTCTVGCDCDRYMEIWNNVFSQFNSDGKGNYTELIQKNIDTGMGLERLAVALQDVE 246 Query: 242 NNYDIDLFKHLIQASEQV--TGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +++D K L+ ++ T K + V+ R+I DH+RS +F+I+DGI+P+NEGRGY Sbjct: 247 SIFEVDTIKALLDKVAELAHTSYKEDEKKDVSLRLITDHIRSCTFMISDGIMPSNEGRGY 306 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R+LG + + +L + YPEL + K +I + L E+ +F Sbjct: 307 VLRRLLRRAARHGRMLGIKDTFLANLANKVIELSKDGYPELEEKKEMILKVLTEEENKFN 366 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + +L K I++G+ AF+LYDT+G PLD+ ++I+ +G + +D Sbjct: 367 KTIDQGLSILSDIEENLSKSGQRIISGEDAFRLYDTYGFPLDLTKEIIEEKGFS-VDEDG 425 Query: 418 FNQALEEQRSRARAHSLG---LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN+A+E QR++ARA +G+ T I+ SL K + F GYD L + Sbjct: 426 FNKAMEAQRNQARAARKATNYMGADVT--IYQSLDPKLTSV-FEGYDSLTDT-------- 474 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + A+ + EIVE G ++ D+T FYA GGQ D G Sbjct: 475 ---------------GKITALTTEDEIVEAVAEGDHGTIILDKTSFYATMGGQNADIGII 519 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + DV K H V +G+ + ++ +D +NRR+ + NHSATHLLH Sbjct: 520 KTANSVFNVVDVIKLGGNKIGHVGYVSQGMFKLGDTVETVVDAENRRRTAANHSATHLLH 579 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + LRFD TH K ++ EL +E VN I ++LPVVT +M Sbjct: 580 KALREVLGNHVEQAGSYVDARRLRFDFTHFKSLSKEELDDVEALVNREINKSLPVVTDVM 639 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E A SGA AL G KY VRVVS+ G S LCGGTHV +T +I L I+S++ Sbjct: 640 DVESAKKSGAMALFGEKYQKDVRVVSM-----GDFSKELCGGTHVHNTADIKLFKIISDN 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+T + ++ A LK ++ +V + E + EE + L+ + Sbjct: 695 GIAAGVRRIEALTNDGVIEFYKNIENRMNECAKLLKTNENELVSKTESVLEEIKTLKSEN 754 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K +L E L S +I + F++ +S V+ EL+++ D L+ + G Sbjct: 755 EKLKAKLASEALGDSKESIEEIGGIKFIAMHVSGVEMNELRNLGDKLKSDVDDG------ 808 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG--------------GRPHMA 875 ++V+ D+ + N + +A A +G G GRP++A Sbjct: 809 ---------MVVLASDVDGKVNLLCMAGDKALAVGAHAGNIIKGIAAIVGGGGGGRPNIA 859 Query: 876 QSGGPN 881 Q+GG N Sbjct: 860 QAGGKN 865 >gi|295111268|emb|CBL28018.1| alanyl-tRNA synthetase [Synergistetes bacterium SGP1] Length = 879 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 351/905 (38%), Positives = 508/905 (56%), Gaps = 53/905 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FL+F+++ G PS SLIP +DP+L+FT +GMVP K + G +P Y + T QK Sbjct: 9 LREMFLKFWEEKGSHRCPSFSLIP-DDPSLLFTIAGMVPLKPYYLGIRQPPYPRIVTSQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR ND++NVGRT RHHTFFEMLGNFS+G YFK+ AI AW+ LT LD RLY Sbjct: 68 CVRT----NDIENVGRTARHHTFFEMLGNFSWGSYFKKEAITWAWEFLTDRIGLDPNRLY 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y +DEE+ ++W + +GL D+I+R ++N+W M +TGPCGPCSEI++D+G G Sbjct: 124 ATIYQDDEESREVWHRQAGLPEDRILRFGQDNNYWFMGDTGPCGPCSEIYYDRGPDYGCG 183 Query: 187 LP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P G + +RY+EIWNLVF QF++Q LP +IDTGMGLER+A+V+Q +Y Sbjct: 184 KPSCGVGCDCDRYLEIWNLVFTQFDRQKDGSLPNLPHKNIDTGMGLERLASVVQGVDTDY 243 Query: 245 DIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 + DLF LI+ + G++Y G N + RVI DH+RS +F++ADG+LPAN+G GYVLR Sbjct: 244 ETDLFTPLIRHTCARAGIQYGQGGRNDMAVRVIADHVRSVAFMLADGVLPANDGPGYVLR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RRA+ + RLLG+ + +P L MG Y ELI + IE+ + E+ERF +TL Sbjct: 304 RLLRRAVRFGRLLGFEGAFLCEYMPILIDLMGDPYRELIDQRPTIEQIITVEEERFQRTL 363 Query: 363 DRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +G L + + L G+ E+ G+V F LYDT+G P ++ +++ +G A +D F Sbjct: 364 QQGTDLFEAETARLAAAGRREV-PGEVVFTLYDTYGFPPELTREMADEQGFA-VDEAGFK 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+++QR RARA S S ++ L+ + GAT+F GY + M Sbjct: 422 AAMQQQRDRARASSKQKKSALAGDVYTELENEGGATRFTGY-----ASAM---------- 466 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 G + + ++G + V G + E+V D+TPFYAE GG++GDTG Sbjct: 467 -------GAGKVTAILTKEGR--RDHVEGNGEFELVLDETPFYAERGGEVGDTGTIRDGE 517 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 L++ + G+ VH + G +R S+ D R+ + NH+ THLLH AL Sbjct: 518 TTLEVLNTVPHG-GVIVHRVRMTEGSVRVGDSMTAEADDARRQAIRRNHTGTHLLHEALG 576 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV Q GS +T LRFD TH P+T +++ +E VN I +N+PV T E+ Sbjct: 577 RVLGRHVRQAGSLVTDRFLRFDFTHHTPLTDGQIEEVERIVNGEILRNVPVSTAEHTLEE 636 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A GA AL KY D VRVV+V S LCGG HV +TG+I ++ E SI + Sbjct: 637 ARELGAKALFDEKYGDVVRVVTVPD-----FSMELCGGLHVRATGDIGSFKVLREESIGS 691 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI---HA 775 G RRI A+TG + + L L + + + +++ EE R LQ A Sbjct: 692 GTRRILAMTGMEVVELMQVLFGLRRRLMGILSADEEGLEAKAKDLAEELRALQKRAQERA 751 Query: 776 KRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + +L NV+ + ++ +V S L+ V D ++ + +L + E Sbjct: 752 RHELTDNVDRFVERRRVGGAVLHIGRFPDVKSDVLRDVGDRVKAGPDPSVALLASVD-EN 810 Query: 835 KASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 A LIV+ +D + NA + R ++ VL GG GGGRP AQ GG +G K D+A+ Sbjct: 811 GACTLIVMADDRAVKLGANAGAIVREASAVL-GGKGGGRPSTAQGGGRDGEKLDEALERA 869 Query: 893 ASFLK 897 A LK Sbjct: 870 AEVLK 874 >gi|291524925|emb|CBK90512.1| alanyl-tRNA synthetase [Eubacterium rectale DSM 17629] Length = 886 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 350/913 (38%), Positives = 512/913 (56%), Gaps = 58/913 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P + VTT Sbjct: 7 VNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPPRRRVTT 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ L++ Sbjct: 67 CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVLGLEKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFF 177 RLY ++Y ED+EAF +W K G+ D+I R + DNFW GPCGPCSEI++ Sbjct: 123 RLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGPCSEIYY 181 Query: 178 DQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 D+GE G P + +R++E+WN VF QF L +IDTGMGLER+A Sbjct: 182 DRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMGLERLAV 241 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293 V+Q+ + +DID K + +++G KY + + V+ R+I DH+RSS+FLI+DG++P+ Sbjct: 242 VMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLISDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA + R LG + + + E YPEL + K I + L Sbjct: 302 NEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFILKVLTQ 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KT+D+GL +L + H+ D ++L+G+ AFKLYDT+G P+D+ +IL +G Sbjct: 362 EEEKFAKTIDQGLGILADMEEHMKADGVKVLSGEDAFKLYDTYGFPVDLTAEILEEKGFT 421 Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 D F +E QR +AR A G ++ + + T+F GYD L + Sbjct: 422 -YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEI-TTEFTGYDKLTDT---- 475 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + ++VE G K V+ TPFYA GGQ GD Sbjct: 476 -------------------AEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMGGQQGD 516 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + + D K + H V G++RT L++D + R NHSAT Sbjct: 517 KGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCRNHSAT 576 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL +LG+HV Q GS + RFD +H +T+ ELK +ED VN+ I + + V Sbjct: 577 HLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINEAIEVR 636 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM ++A +GA AL G KY ++VRVVS+ G S CGGTHV +T +I + I Sbjct: 637 TDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDIKVFKI 691 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SES + AG+RRIEAITG ++ +++L+ A +K + N+ R+E + E + L Sbjct: 692 LSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLMAEMKAL 751 Query: 771 QLIHAKRKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + K + + L ++ DVN ++ + VD L+ + D+L++K+ G+I Sbjct: 752 QSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKLGEGVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGN 883 +L S E K +++ + T+ + +A +L + +++KV GGGGGRP+MAQ+GG N Sbjct: 812 VLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVG--GGGGGRPNMAQAGGKNPA 868 Query: 884 KADQAIAGVASFL 896 AIA V L Sbjct: 869 GIPDAIASVKDAL 881 >gi|73662452|ref|YP_301233.1| alanyl-tRNA synthetase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|83305860|sp|Q49Y56|SYA_STAS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|72494967|dbj|BAE18288.1| alanyl-tRNA synthetase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 876 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 339/920 (36%), Positives = 534/920 (58%), Gaps = 79/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR F+++F + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQNFIDYFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT E ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKQEAIEFAWEFLTSEKWMAMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 + LY+T++ ED+EA+++W + GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 KLLYVTIHPEDKEAYRIWNEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGED 179 Query: 182 ---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ER++E+WNLVF +F LP +IDTGMGLER Sbjct: 180 FGQDDPAEEMYPGG------ENERFLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLIADGI 290 MA++ Q NY+ DLF +I E+V+G Y E +N V +VI DH+R+ +F IADG Sbjct: 234 MASLAQNVRTNYETDLFMPIIHEVEKVSGKTYLENDNYDVAFKVIADHIRTIAFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQSLDINEPFMYRLVDIVADIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL+ GL +L+ +++ ++G AFKLYDT+G P+++ ++I Sbjct: 354 IKSEEERFHETLEEGLAILNNLVAQAKTSTHEISGKDAFKLYDTYGFPVELTEEIATQEN 413 Query: 410 LAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L+ ID+ +F + +++QR RAR + S+ + S +KI + F+GYD++ Sbjct: 414 LS-IDMQTFEEEMQQQRDRARQARQNSQSMQVQSEVLKKITTD-------STFVGYDVM- 464 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 D+ +S++ I+Q GE+VE A +G+ + + +TPFYA + Sbjct: 465 -------DK---------------ASVITDIIQNGELVESAEAGETIYFILRETPFYAVS 502 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G + + +T+V K G +H ++ G ++ + +++++ RR + Sbjct: 503 GGQVADQGTISNENFEIAVTEVTKAPNGQNLHKGEIQFGTVKKNAEVSASVNHKERRSIK 562 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV+Q GS + D LRFD +H P+T E+ ++E VN+ I Sbjct: 563 KNHSATHLLHAALKEVLGDHVNQAGSLVEADRLRFDFSHFGPMTQEEIDTVERRVNEEIW 622 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++ V + M +A GA AL G KY + VRVV++ S LCGG HV++T E Sbjct: 623 NSIEVDIQEMPISEAKQLGAMALFGEKYGEIVRVVNM-----APFSIELCGGIHVNNTAE 677 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763 I L IVSES AG+RRIEA+TG+ A +L + ++ S +KV S V+ ++ + Sbjct: 678 IGLFKIVSESGTGAGVRRIEALTGKSAFLYLETIQSQFNAVKSQVKVKSDDQVLEKIVHM 737 Query: 764 WEEYRKL--QLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQ 817 +E ++L QL +++ L + D++ +++ ++N + + +EVD +K ++ MD + Sbjct: 738 QDEEKELTKQLEQKNKEVTSLKMGDIT-NQVEEINGLKVLATEVDVPNAKAIRETMDDFK 796 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 K+Q +I+L+ + + K S++ V + L D+ A D+ + A V+ GG GGGRP MAQ Sbjct: 797 SKLQDTVIVLIS-NIDGKVSLVATVPKALTDKVKAGDIIKNMAPVV-GGKGGGRPDMAQG 854 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG +++ + ++K Sbjct: 855 GGTEPKNITESLRFIKDYIK 874 >gi|239827827|ref|YP_002950451.1| alanyl-tRNA synthetase [Geobacillus sp. WCH70] gi|239808120|gb|ACS25185.1| alanyl-tRNA synthetase [Geobacillus sp. WCH70] Length = 877 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 358/914 (39%), Positives = 525/914 (57%), Gaps = 66/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SLIP +DP+L++ NSG+ K F G+ P + Sbjct: 7 AQVRKMFLDFFKEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDNPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT E D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +T++ ED+EAF++W K GL ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 DRLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEE 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E +RY+E+WNLVF QF LPK +IDTGMGLERM ++L Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N++ DLF +I+A+EQ++G KY + V +VI DH+R+ +F I DG LP+NE Sbjct: 239 QGVPTNFETDLFMPIIRATEQISGEKYGVDKEKDVAFKVIADHIRAVTFAIGDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ YA+ L P M L+P + M YPE+ + I++ +++E+ Sbjct: 299 GRGYVLRRLLRRAVRYAKQLHIERPFMYELVPVVGEIMNDFYPEVKEKAAFIQKVIKNEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA-- 411 ERF +TL GL +L V+ + I++G+ F+LYDT+G P+++ ++ G+ Sbjct: 359 ERFHETLHEGLAILASVIQKEKERGSNIISGEDVFRLYDTYGFPVELTEEYAHEEGMEVD 418 Query: 412 --GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 G + Q + +R S+ + G L + ++F+GYD L Sbjct: 419 HDGFEREMERQRERARAARQDVDSMQVQGGV-------LGDIKTESEFVGYDQLHAQ--- 468 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S V IV+ G++V E G++ +++ D TPFYAE+GGQ+ Sbjct: 469 --------------------STVAVIVKDGQLVNEVKEGEEAQIILDVTPFYAESGGQIA 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + + + DVQK G +HH IVE+G LR + ID R + NH+A Sbjct: 509 DQGWIENETTKAFVKDVQKAPNGQHLHHIIVEKGTLRKGETYTAQIDEAKRASIIKNHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + PD LRFD +H + EL+ IE VN+ I +++PV Sbjct: 569 THLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIPV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 +A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 629 EIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLFK 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IVSES I AG RRIEA+TG+ A + Q L+ +A LK + +V R++ + E R+ Sbjct: 684 IVSESGIGAGTRRIEAVTGEAAYRFMNEQITLLQEVAQKLKTNPKEIVNRIDALMNEIRQ 743 Query: 770 LQLIHAKRKLQL-NVEDLS-CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGI 824 LQ + +L N+E + +K+ +VN + + S+V D L++++D L++K+ S I Sbjct: 744 LQRENESLAARLGNMEAANLVNKVKEVNGIPVLASKVNANDMNHLRTMVDELKQKLGSAI 803 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I+L + E K +++ +T DL+++ ++A L + A V GGGGGGR MAQ+GG + + Sbjct: 804 IVLAAVQGE-KVNLIAGITNDLIEKGYHAGKLIKEVA-VRCGGGGGGRADMAQAGGKDPS 861 Query: 884 KADQAIAGVASFLK 897 K +A+ V ++K Sbjct: 862 KVGEALQYVEQWIK 875 >gi|300868714|ref|ZP_07113325.1| Alanyl-tRNA synthetase [Oscillatoria sp. PCC 6506] gi|300333275|emb|CBN58517.1| Alanyl-tRNA synthetase [Oscillatoria sp. PCC 6506] Length = 879 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 369/914 (40%), Positives = 530/914 (57%), Gaps = 72/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+F+ + GH++LPS+SL+P DPT++ T +GM+PFK IF GQ P TT Sbjct: 11 SEIRQKFLDFYAQRGHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRSPQSPRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI AW+L T+ F L Sbjct: 70 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKQAIAWAWELCTEVFGLPPEN 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD----QG 180 L I+V+ ED+EAF LW K G+ +I R+ DNFW TGPCGPCSEI++D +G Sbjct: 126 LVISVFREDDEAFDLWAKEIGIPPQRIQRMGEEDNFWVSGPTGPCGPCSEIYYDFHPEKG 185 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + I E+ R+IEI+NLVFMQ+ + L +IDTGMGLERMA VLQ+ Sbjct: 186 DDI------DLEDDTRFIEIYNLVFMQYNRDAAGNLTPLQNQNIDTGMGLERMAQVLQKV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 NNY+ DL +++ + ++ + Y + N ++ +VI DH+R+ +IAD I +N GR Sbjct: 240 PNNYETDLIFPIVKTAAEIARIDYSQADENTKISLKVIGDHIRAVVNMIADEIRASNIGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLP---ALCTEMGSAYPELIQAKLLIEETLRSE 354 GYVLRR++RRA+ + RL+G + + ALC + AYP + Q I+ L E Sbjct: 300 GYVLRRLIRRAVRHGRLIGIEGGFITKVAETAIALCED---AYPNVRQRSAAIQAELERE 356 Query: 355 DERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + F +TL+RG LL ++ L GK++I +G AF LYDT+G PL++ Q+I +GL Sbjct: 357 EANFLRTLERGEKLLAEIIDRLQQQGKNQI-DGQDAFTLYDTYGFPLELTQEIAEEQGLT 415 Query: 412 GIDIISFNQALEEQRSRAR-AH-SLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 +D+ F QA+EEQR+R + AH ++ L G+ +K L E AT+F+GY Sbjct: 416 -VDVEGFEQAMEEQRNRGKDAHETIDLTVQGSLDK----LAENIHATEFVGYK------- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 L++ V VK I+ G+ VEEA +++V+ +QTPFYAE+GGQ+ Sbjct: 464 --------------QLSSNVQ--VKVILVNGKSVEEASEESEIQVILNQTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G GD I ++I DV+K+++ FVH +ERG LR S+ +D RR++ NHS Sbjct: 508 GDRGDLSGDSILVKIEDVKKESD-FFVHFGRIERGTLRVGDSMTAQVDNSRRRRVQANHS 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL I+ + +SQ GS + D LRFD + IT+ EL+ IED +N IA+ Sbjct: 567 ATHLLQAALKQIVDNSISQAGSLVDFDRLRFDFNCPRSITAEELQKIEDLINSWIAEAHL 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 M +A GA A+ G KY D VRV+ GV S LCGGTHVS+T EI L Sbjct: 627 AEIAQMPIAEAKKKGAVAMFGEKYGDVVRVIDFP----GV-SMELCGGTHVSNTAEIGLF 681 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSE+ I +GIRRIEA++GQ +L +D+ ++ L K + R+ + E + Sbjct: 682 KIVSETGISSGIRRIEAVSGQAVLDYLNVRDKVVRDLGDRFKAKPEELPNRITNLQNELK 741 Query: 769 KLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSG 823 Q L K +L + D V II+E VD++ LK+ + LQ+K+ + Sbjct: 742 ANQKELEALKSELAIAKSDQLLSSAESVGEFKIIIAELGDVDTEALKTAAERLQQKLGNA 801 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 ++L + + K S++ + D+ + A AK+ GGGGGGRP++AQ+GG + Sbjct: 802 AVVLASVPEADKVSLVAAFSADVNKKGLQAGKFIGQIAKIC-GGGGGGRPNLAQAGGRDA 860 Query: 883 NKADQAIAGVASFL 896 +K +A+ + L Sbjct: 861 SKLKEALESARNLL 874 >gi|269792643|ref|YP_003317547.1| alanyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100278|gb|ACZ19265.1| alanyl-tRNA synthetase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 882 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 340/890 (38%), Positives = 510/890 (57%), Gaps = 55/890 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL FF++ G PS+SL+P +DP+L+FT +GMVPFK F G ++P + VTT Sbjct: 7 NELREMFLSFFEEKGCVRYPSASLVP-DDPSLLFTIAGMVPFKPYFLGIKEPKERRVTTA 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND+DNVGRT RHHTFFEMLGNFSFG YFK I AW+ LT+ +D R Sbjct: 66 QKCIRT----NDIDNVGRTARHHTFFEMLGNFSFGDYFKAEVIPWAWEFLTQRVGMDPDR 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY+TV+ +D+EA +W G+ D+I R+ DNFW+ GPCGPCSEI +DQG Sbjct: 122 LYVTVFRDDDEAESIWMSSVGVPKDRIFRMGEEDNFWAAGPVGPCGPCSEIIYDQGPEFS 181 Query: 185 GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P G + +RY+E+WNLVFMQ+ + LP+ +IDTGMGLER+++V+Q + Sbjct: 182 CGKPSCGVGCDCDRYLEVWNLVFMQYNRDEAGNLTPLPRKNIDTGMGLERLSSVVQWVRS 241 Query: 243 NYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +++ DLFK +I + Q++G+ Y +G+ V RVI DH+R+++F++ADG+LP+NEG G Sbjct: 242 DFETDLFKPIIDRACQISGVAYGSSPQGDLAV--RVISDHIRAAAFMVADGVLPSNEGPG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RR + + RLLG P ++ +LP + MG Y EL++ + I + L E+ RF Sbjct: 300 YVLRRLIRRTIRFGRLLGIDRPFLLEVLPVVEQVMGGHYGELVEHRSTINQVLELEESRF 359 Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL++G LL+ + + + G+VAF+LYDT+G PL++ ++ +GL+ +DI Sbjct: 360 LRTLEQGSALLEEEVRRVRSRGLSVFPGEVAFELYDTYGFPLELTSEMCQEQGLS-VDIE 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 +F +A+E QR AR+ S + T + +S K G +FIGYD G Sbjct: 419 AFERAMERQRELARSGSKHASAAVTRTV-YSDVLKAGRIRFIGYDSEEGE---------- 467 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V A+V++GE+++ A G +VEV D TPFY E GGQ+GD G Sbjct: 468 -------------ARVVALVREGEMIQSAREGDRVEVFLDVTPFYGEKGGQVGDRGEIRW 514 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG Q+ D Q +G+ H A + +G LR + +D + R + +H+ATH+LH A Sbjct: 515 DGGLAQVEDAQCPMDGLTSHLATLVQGELRVGQRVFCRVDGERRWHIRRHHTATHILHEA 574 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q+GS + RFD H P++ E+ +ED VN +I ++ V T + Sbjct: 575 LGRVLGGHVRQSGSWVGDGFFRFDFNHFSPLSDEEIARVEDLVNQVILEDRRVTTLETSM 634 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A GA AL KY VRVVSVE S+ LCGGTHVSS+G+I L I E I Sbjct: 635 DSAREMGAKALFDEKYGQVVRVVSVEG-----FSTELCGGTHVSSSGQIGLFKIQREEGI 689 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRI A G + E +K +S L V V R+ ++ E + L+ + Sbjct: 690 GSGLRRITATAGLASLEAYRRAAEVVKGASSALGVEAETVRDRIMDLMREVKSLERELRQ 749 Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 +LQ+ E L + ++ + +S + + EL+++ D++++ + +L IS Sbjct: 750 LRLQVKSEGLKRALEAPQEVKGIKVLSFLTEDSSPDELRAMGDSVREMYPDSVCVL--IS 807 Query: 832 KEKKASVLIVVTED--LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + ++IV+ D + A L + S L G GG+ + AQ GG Sbjct: 808 RNGGKFMVIVMCSDGAVSKGVKAGSLIK-SLGALWGFNAGGKANTAQGGG 856 >gi|270290968|ref|ZP_06197191.1| alanyl-tRNA synthetase [Pediococcus acidilactici 7_4] gi|270280364|gb|EFA26199.1| alanyl-tRNA synthetase [Pediococcus acidilactici 7_4] Length = 881 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 350/920 (38%), Positives = 525/920 (57%), Gaps = 76/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SEIRRMYLDFFKSKGHVVEPSASLIPKDDPTLLWVNSGVATMKKYFDGSVVPEVPRLTSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHT FEMLGNFS G YFKE AI AW+LLT + FD+D Sbjct: 67 QKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWFDMDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +DEEA K+W + +G+ I+ DNFW + E GP GP SEIF+D+GE Sbjct: 123 EKLYVTVYPKDEEAKKIWLE-TGVDPSHIVE--AEDNFWDIGE-GPSGPDSEIFYDRGEE 178 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ER++EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 179 FNNLADDDPENYPGG--ENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVVS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 V Q+ N++ DLF +I E+++G KY + N+ V+ +VI DH R+ +F I DG +P+ Sbjct: 237 VFQDAPTNFETDLFLPIIHEVEKLSGKKYGVDKNDDVSFKVIADHARAITFAIGDGAIPS 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV+RR++RRA+ + + L +P + ++P + M YPE++ K IE+ ++S Sbjct: 297 NEGRGYVIRRLLRRAVMHGKKLNINKPFLYQMVPVVGKIMEDYYPEVLADKDYIEKVIKS 356 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E++RF +TL GL LL+ +++ D ++++G AF+L+DT+G PL++ ++ +G+ Sbjct: 357 EEDRFNETLTDGLELLNSIIADTKADHSKVISGKDAFRLFDTYGFPLELAKEYAEDQGME 416 Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F +++Q+ RAR A S G + LK ++++GYD L+ Sbjct: 417 -IDEAGFADEMQKQKERARSARSNAKSMGVQSDLLTDLKT---PSEYVGYDTLK------ 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 +D ++++K I+Q ++ + G+ V+FD TPFYAE GGQ+ D Sbjct: 467 -----------VD-----AAVLKDIIQDDQLTDTVNPGE-ARVLFDVTPFYAEMGGQVAD 509 Query: 531 TGC-AIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G DG + ++ DVQ G +H +R + E S L +D ++ NH+ Sbjct: 510 QGVIEDADGNVVAEVVDVQHAPNGQNLHTIKAKREMHAGE-SFTLIVDRAFHLKVEKNHT 568 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + P LRFD TH +T +L+ +E+ +ND I +P Sbjct: 569 ATHLLDQALRDVLGEHTHQAGSLVEPGYLRFDFTHFGQVTDEDLQKVEEIINDKIYDEIP 628 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + E GA AL KY +VRVVSV G +S CGGTHV +T EI L Sbjct: 629 VTTVETDLETGKKMGAIALFDDKYGKKVRVVSV-----GDYSREFCGGTHVKNTNEIGLF 683 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 IVSES + AG+RRIEA+T Q A L G++ L+ A LK +Q +V +VE++ + Sbjct: 684 KIVSESGVGAGVRRIEAVTSQAALEFLNGEEALLQKAAGLLKSAQVKDVPAKVEQLQAQV 743 Query: 768 RKL-QLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSK---ELKSVMDALQKK 819 + L Q I+ +L+ + I D +N + I +EV +L+ + D + K Sbjct: 744 KDLNQTIN---QLEAKIAQAEVANIYDQVQEINGIRLITAEVQVSGMDQLRQMADDWKTK 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQS 877 QS +++L G +KA+++ V + + A DL + ++ KV GGGGGRP+MAQ+ Sbjct: 801 DQSDVLVL-GAKIGEKANLIAAVKDPFVKEGLKAGDLIKAIAPKV--NGGGGGRPNMAQA 857 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG K ++A+ + +L+ Sbjct: 858 GGSAPEKINEALKAASEWLE 877 >gi|118444620|ref|YP_878353.1| alanyl-tRNA synthetase [Clostridium novyi NT] gi|205830036|sp|A0Q151|SYA_CLONN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118135076|gb|ABK62120.1| alanyl-tRNA synthetase [Clostridium novyi NT] Length = 879 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 354/907 (39%), Positives = 527/907 (58%), Gaps = 50/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ GH LPS S++P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEM+GNFSFG YFK I AW+ T+ L + Sbjct: 66 CQKCIRTG----DIENVGKTSRHATFFEMMGNFSFGDYFKNEVIPWAWEFTTEVLKLPKE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQGE 181 +LY+T+Y +D+EA+ +W + + I R+ DNFW GPCGPCSEI F D GE Sbjct: 122 KLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDNGE 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + +R +E WNLVF QF++ L +IDTGMGLERMAT++Q Sbjct: 181 IKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQGVE 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +++D K ++ + KY + + V+ R+I DH+RS S +I+D +LP+NEGRGY Sbjct: 241 TIFEVDTIKSILDKVAALANTKYGEDELKDVSLRIITDHVRSVSVMISDEVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG + ++ ++ G AYPEL + K I++ + E+ERF Sbjct: 301 VLRRLLRRAARHGKLLGIKGTFLYKIVDSVIENSGEAYPELKEKKDYIKKVISIEEERFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D G+ +L + L K+ ++L+G+ FKLYDT+G PL++ ++IL +G+ +D+ S Sbjct: 361 ETIDSGMEILKEYIEDLEKNNKKVLSGEKVFKLYDTYGFPLELTEEILEEKGIT-VDMDS 419 Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN+ ++EQR RARA S GT KI ++ + T F GY+ L Sbjct: 420 FNKEMKEQRERARAARSESTYMGTDVKILDTIPSEI-ETTFDGYENLE------------ 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + S VK I++ + G+K +V D+TPFYAE GGQ+GD G Sbjct: 467 -----------LQSKVKVIIKDDAFADCINKGEKGIIVTDRTPFYAEMGGQIGDKGTISA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG ++ D + G VH V G ++ E ++L +D + R + NHSATHLLH A Sbjct: 516 DGFMAKVQDCKNNIGGKIVHFVEVTEGSIKLEDEVLLEVDRKRRENIGKNHSATHLLHAA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ++G HV Q+GS + D LRFD TH + +T ELK +ED VND I VVT+ M Sbjct: 576 LRKVVGEHVHQSGSYVDEDKLRFDFTHFESLTHEELKKVEDLVNDTIESVWDVVTKEMTI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A SGA AL KY D+VRVV + G S+ LCGGTH+S+ G+I L IVSES I Sbjct: 636 EEAKNSGAMALFDEKYGDKVRVVKM-----GDFSTELCGGTHISNVGKIGLFKIVSESGI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-KLQLIHA 775 AG RRIEA+TG +A + + + L+ +AS LK S+ +++ R+ + E + K + I A Sbjct: 691 AAGTRRIEAVTGHKALEFIEHKSDLLRQIASMLKCSEKDIINRLNQQNAELKDKDKEISA 750 Query: 776 -KRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K KL ED + ++ V + +VD + L+++ D ++ KI+SG+++L G Sbjct: 751 LKSKLASGSEDDILKNIKEVKGVKLAVAALKDVDGEALRNLGDKIKNKIESGVVVL-GSE 809 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E K + + ++D++ + + + R AK+ GGGGGGRP MAQ+GG K + AI Sbjct: 810 VEGKVQFIAMASKDVVSKGVHCGTIVREIAKI-AGGGGGGRPDMAQAGGRLPEKLNDAIN 868 Query: 891 GVASFLK 897 V + ++ Sbjct: 869 EVENIME 875 >gi|303230862|ref|ZP_07317609.1| alanine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6] gi|302514622|gb|EFL56617.1| alanine--tRNA ligase [Veillonella atypica ACS-049-V-Sch6] Length = 872 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 348/909 (38%), Positives = 508/909 (55%), Gaps = 59/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P +TT Sbjct: 4 NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD+ R Sbjct: 64 QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKDAIHWAWEFLTEVIKLDKNR 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176 Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 C P PG + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQHC 234 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL +I+A+ + G+KY + N V+ +VI DH R+ + LI+DG+LP+NEGRG Sbjct: 235 KTNFETDLIFPIIKATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ERF Sbjct: 295 YVLRRILRRAVRHGRLLGIEGLFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERF 354 Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ A++EQR RAR +KE +K D L Sbjct: 414 GFDAAMKEQRERAREA--------------RVKED--------------AKVATPDITFL 445 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++ +S V + + E ++ AV G ++ V+ TPF+AE GGQLGDTG +G Sbjct: 446 KDEELVENEAETASSVLMLGKGSERLQTAVDGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH A Sbjct: 506 SMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTARRAAMARNHTATHLLHAA 565 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 566 LKRVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SES I Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSESGI 680 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEAITG+ A ++ +AS LK V R+ ++ E ++ +L Sbjct: 681 GSGVRRIEAITGRAALDAAKHDRLTIERIASELKTKPAQVEERLHQVLAEAKETAKELDQ 740 Query: 775 AKRKLQ-LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830 ++++ D+ K I DV F++ + EL+ D L K SG++++ Sbjct: 741 IRKEVSAAGAADIVAGKVMIGDVAFVAASVKASSIDELRDFADMGLDKLDGSGVVLVGAA 800 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + + V++D++ + A ++ + +A+V GG GGGRP MAQ+GG K A+ Sbjct: 801 MGDDKVNFVCKVSKDVVGKGVKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMDAL 859 Query: 890 AGVASFLKK 898 +K+ Sbjct: 860 KAAGEAVKE 868 >gi|15613830|ref|NP_242133.1| alanyl-tRNA synthetase [Bacillus halodurans C-125] gi|20139935|sp|Q9KDE6|SYA_BACHD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|10173883|dbj|BAB04986.1| alanyl-tRNA synthetase [Bacillus halodurans C-125] Length = 879 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 356/916 (38%), Positives = 531/916 (57%), Gaps = 69/916 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH++ PS+SL+P +DP+L++ NSG+ K F G+ P +T Sbjct: 7 AQVRQMFLDFFKEKGHDVEPSASLVPHDDPSLLWINSGVATLKKYFDGRVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT E D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSEKWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +L +TV+ ED+EA+ WK+ G+ ++IIR+ NFW + E GP GP +EIF+D+G Sbjct: 123 EKLSVTVHPEDDEAYSYWKEKIGIPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGPE 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E +RY+E+WNLVF QF LPK +IDTGMGLER Sbjct: 180 YGDQPNDPELYPGG------ENDRYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M +V+Q N++ DLF +I+A+E+++G +Y ++ V+ +VI DH+R+ +F I DG Sbjct: 234 MVSVIQNVPTNFETDLFMPIIRATEKISGTEYGSHHEADVSFKVIADHIRTVTFAIGDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+NEGRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I++ Sbjct: 294 LPSNEGRGYVLRRLLRRAVRYAKQIGIDRPFMYELVPVVGDIMVDFYPEVKEKAAFIQKV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF +TL+ GL +L+ V+ + ++G F+LYDT+G P+D+ ++ + + Sbjct: 354 VKTEEERFHETLNEGLSILEKVIDKAKSEGASTISGSDVFRLYDTYGFPVDLTEEYVEEQ 413 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D+ F +E QR RAR GS + L + + FIGY L Sbjct: 414 GLQ-VDLDGFEAEMERQRERARTARQQAGSMQVQD--EVLGQITVDSTFIGYKQL----- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + ++ IV + + +GQ+ +V+ +TPFYAE+GGQ+ Sbjct: 466 ------------------STETTIETIVLDKTVADYVGAGQEAKVILKETPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G G ++DVQK G +H IV+ G L+ + ++ R + NH+ Sbjct: 508 ADKGIIRGANGFAVVSDVQKAPNGQHLHTVIVKEGTLQVNDQVQAIVEETERSGIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS ++ + LRFD +H +T E + IE VN+ I Q + Sbjct: 568 ATHLLHRALKDVLGEHVNQAGSLVSEERLRFDFSHFGQVTDEEKEKIERIVNEKIWQAIK 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V ++A A GA AL G KY D VRVV V G +S LCGG HV++T EI L Sbjct: 628 VNISTKTLDEAKAIGAMALFGEKYGDIVRVVEV-----GDYSIELCGGCHVTNTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 IVSES I AG+RRIEA+TG+ A + Q + LK A+ +K +V RVE + ++ Sbjct: 683 KIVSESGIGAGVRRIEAVTGKEAFLFMAKQLDLLKETAATVKAKNVKDVPVRVEALQQQI 742 Query: 768 RKLQLIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 R+LQ + +L N+E S KI V ++ IS D L+S++D L+++I S Sbjct: 743 RELQRENESLNAKLGNMEAGSLVNEVQKIEGVPVLAKAISGADMDGLRSIVDKLKQEIPS 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +I+L G + E K +++ VT+DL+++ ++A L + A GGGGGGRP MAQ+GG Sbjct: 803 VVIVL-GTASEGKVNIVAGVTKDLINKGYHAGKLVKEVATRC-GGGGGGRPDMAQAGGKQ 860 Query: 882 GNKADQAIAGVASFLK 897 K A++ V ++K Sbjct: 861 PEKLQDALSFVYEYVK 876 >gi|228470921|ref|ZP_04055766.1| alanyl-tRNA synthetase [Porphyromonas uenonis 60-3] gi|228307318|gb|EEK16332.1| alanyl-tRNA synthetase [Porphyromonas uenonis 60-3] Length = 872 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 355/926 (38%), Positives = 511/926 (55%), Gaps = 84/926 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR FL+FF+++GH ++PS+ ++ +DPTLMFTN+GM FK+I G ++P Y+ Sbjct: 1 MMTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFK+ AI+ AW LT+ L Sbjct: 61 AADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAIEFAWTFLTERLHL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+TV+ D+EA W + + D+II + DNFW M +TGPCGPC Sbjct: 121 PKDRLYVTVFGGSAEEGLSRDDEAAGYW--LQHTTEDRIIDGSRKDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 SEI D Q C G +++ IEIWNLVFMQ++++ LP ID Sbjct: 179 SEIHIDLRSEEERQEIC---GRDLVNKDHPLVIEIWNLVFMQYDRKADGHLEPLPHKVID 235 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSS 283 TGMG ER+ +Q K +NYD DLF LI+A E ++G +Y N V+ RV+ DH+R+ + Sbjct: 236 TGMGFERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIA 295 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 F IADG LP+N GYV+RRI+RRA+ YA L EP++ LLP L MG AYPE++ Sbjct: 296 FAIADGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGGAYPEIVA 355 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401 + LI ++ E+E F +TL +GL LL+ + L +D ++L+G AF LYDT+G PLD+ Sbjct: 356 QRELIASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLT 415 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 + IL RG+ +D ++F++ ++EQ+SRAR + W L E+ + F+GY+ Sbjct: 416 ELILSERGMT-LDQVAFDKLMQEQKSRARQAAA-----VDAADWEVLDEETSESTFVGYE 469 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L+ + RKV +K +VV +TPFY Sbjct: 470 TLQIETHILRYRKVADKK----------------------------HSYYQVVLAETPFY 501 Query: 522 AEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AE GGQ+GD G I DG I D K+ + VH I+ + L+ + + R Sbjct: 502 AEMGGQVGDKGVLIAQDGTEYPILDT-KRENNLTVH--ILSTLPADPKQPLIARVGAELR 558 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 NH+ATHL+HHAL +LG+HV Q GS ++ D LRFD +H K +T E+ +E VN Sbjct: 559 HLTEANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVN 618 Query: 641 DIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 I + P R +R IA GA AL G KY D VRV ++Y D S LCGG Sbjct: 619 AEIRADRP---RDEHRNVPIAQAKEMGAMALFGEKYGDEVRV--IKYGD----SVELCGG 669 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV+STG+I I+SE SI AGIRRIEA+TG +A ++ +E+L+ L + Sbjct: 670 THVASTGQIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPL 729 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKS 811 I E + + I K Q E ++ +AD + + + S K Sbjct: 730 KALDRLIAESAEQRKAIEQYTKAQ--AEQIALQALADQTKRGETTIVTVNKSMSSDVAKD 787 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870 V +++++Q + L+G ++E K ++ ++++ DL+D+ NA L + A ++ GGGGG Sbjct: 788 VAGTIRERLQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNAGKLIKEVASLI-KGGGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +PH A +GG N AI + S + Sbjct: 847 QPHFATAGGRNPEGLQAAIDHIVSLI 872 >gi|303238701|ref|ZP_07325234.1| alanyl-tRNA synthetase [Acetivibrio cellulolyticus CD2] gi|302593820|gb|EFL63535.1| alanyl-tRNA synthetase [Acetivibrio cellulolyticus CD2] Length = 879 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 332/903 (36%), Positives = 536/903 (59%), Gaps = 58/903 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ GH LPS L+P NDP+L+ NSGM P K FTG+E+P + V T Sbjct: 6 LNELRERYLKFFEGKGHLRLPSFPLVPQNDPSLLLINSGMAPLKPYFTGKEEPPRRRVAT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH TFFEMLGNFSFG YFK+ AI AW+ +T++ + Sbjct: 66 CQKCIRTP----DIENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFITEDLKMPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++T+Y++D+EAF++W K GL ++I+R+ DNFW TGPCGPCSEI++D+G Sbjct: 122 KLWVTIYEDDDEAFEIWNKDVGLPPERIVRMGKKDNFWEHG-TGPCGPCSEIYYDRGVER 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +R+IE WN VF QF + + LP +IDTGMGLER+A + Q+ Sbjct: 181 GCGKPDCKVGCECDRFIEFWNNVFTQFNKDEEGNYTKLPNPNIDTGMGLERLACISQDVE 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D +++++ + +KY ++ ++ RVI DH+RS++ +++DG++P+NEGRGY Sbjct: 241 NLFEVDTVRNVLEYVCKTADVKYHESDKTDISIRVITDHIRSTTMMVSDGVIPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG +P + + + E AYPEL + + I++ +R E+E+F Sbjct: 301 VLRRLLRRAARHGKLLGINKPFLYDISMIVINESREAYPELEEKREYIQKVIRIEEEKFD 360 Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 T+D+GL++L+ + + E + G +A++L+ T+G P+D+ ++I GLA ID Sbjct: 361 LTIDQGLIILNKYIEETKAKNAETITGTMAYELHSTYGFPIDLTREISEENGLA-IDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F + E R R L S +S +K +QF+GY Sbjct: 420 FKAKMLEHRIIGREDYLSKQSSAWSDDIYSSLDKNLKSQFVGYS---------------- 463 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 N + V I++ E+V+ A G+ V V+ D+TPFYA +GGQ+GD G G+ Sbjct: 464 -------ENVAEAKVLYIIKNDEVVQTAKEGESVTVILDKTPFYAASGGQVGDEGYIEGN 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 +R++I D +K +G ++H +VE+G L T + +ID + R ++ NH+ THLL AL Sbjct: 517 DVRIRIEDCKKTDDGKYLHTGVVEKGTLETGADVKASIDIRRRTSIARNHTTTHLLQKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG+HV Q GS + PD LRFD H +TS E+ +E VN+ I ++L V + M + Sbjct: 577 RNVLGTHVHQAGSLVEPDRLRFDFAHFSAMTSEEIAKVESEVNEKILESLIVDVKEMPID 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY + VRVV + +S CGGTH+ ST + + I+SES + Sbjct: 637 EAKKLGATALFGEKYGNIVRVVKI-----ADYSMEFCGGTHLKSTSQAGFVKILSESGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+TG+ A ++L +++ + ++S LK S + V R+E + ++L A++ Sbjct: 692 AGVRRIEALTGEAALAYLHEREKLINEVSSALKSSPQDSVKRIEAM-----AIELKSAQK 746 Query: 778 KLQLNVEDLSCHKIADV----------NFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +++ L + +V + ++D + L++ D ++ K+ SG+++L Sbjct: 747 EIEQLRSKLVSGSLDEVFSNAVEVKGVKVVKARFDQLDMEALRNTGDTIRNKMGSGVVVL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G E K S +++ T+D++ + ++ ++ + AK+ GGGGGGRP MAQ+GG + +K D Sbjct: 807 -GSGYEGKVSFVVMATKDVVAKGIHSGNIIKEVAKI-AGGGGGGRPDMAQAGGKDLSKID 864 Query: 887 QAI 889 +AI Sbjct: 865 EAI 867 >gi|238924198|ref|YP_002937714.1| alanyl-tRNA synthetase [Eubacterium rectale ATCC 33656] gi|238875873|gb|ACR75580.1| alanyl-tRNA synthetase [Eubacterium rectale ATCC 33656] Length = 886 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 350/913 (38%), Positives = 511/913 (55%), Gaps = 58/913 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P + VTT Sbjct: 7 VNELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEVPPRRRVTT 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ L++ Sbjct: 67 CQKCVRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVLGLEKD 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFF 177 RLY ++Y ED+EAF +W K G+ D+I R + DNFW GPCGPCSEI++ Sbjct: 123 RLYPSIYGEDDEAFDIWTKEVGVPGDRITRFYRDPKTGECDNFWEHG-AGPCGPCSEIYY 181 Query: 178 DQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 D+GE G P + +R++E+WN VF QF L +IDTGMGLER+A Sbjct: 182 DRGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFNGDGHGGYTELEHKNIDTGMGLERLAV 241 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293 V+Q+ + +DID K + +++G KY + + V+ R+I DH+RSS+FLI+DG++P+ Sbjct: 242 VMQDVDSVFDIDTMKAIRDKVCELSGKKYHVDEMDDVSIRLITDHIRSSTFLISDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA + R LG + + + E YPEL + K I + L Sbjct: 302 NEGRGYVLRRIIRRAAMHGRTLGIQGAFLGKIAQVVIDESKDGYPELEERKDFILKVLTQ 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+F KT+D+GL +L + H+ D ++L+G+ AFKLYDT+G P+D+ +IL +G Sbjct: 362 EEEKFAKTIDQGLGILADMEEHMKADGVKVLSGEDAFKLYDTYGFPVDLTAEILEEKGFT 421 Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 D F +E QR +AR A G ++ + + T+F GYD L + Sbjct: 422 -YDEAGFESCMEAQRQKARGARKETNYMGADANVYNDIDSEI-TTEFTGYDKLTDT---- 475 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + + ++VE G K V+ TPFYA GGQ GD Sbjct: 476 -------------------AEIAFLTTSDDVVEALSDGDKGSVIVPNTPFYATMGGQQGD 516 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + + D K + H V G++RT L++D + R NHSAT Sbjct: 517 KGIIKTESGTFVVEDTVKVVGNRYAHVGYVSEGMIRTGEKATLSVDTKTRTNTCRNHSAT 576 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL +LG+HV Q GS + RFD +H +T+ ELK +ED VN+ I + + V Sbjct: 577 HLLQKALREVLGTHVEQAGSYQDAERTRFDFSHFSAMTAEELKRVEDIVNEKINEAIEVR 636 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T IM ++A +GA AL G KY ++VRVVS+ G S CGGTHV +T +I I Sbjct: 637 TDIMTVDEAKKTGAMALFGEKYGEKVRVVSM-----GDFSKEFCGGTHVKNTSDIKAFKI 691 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SES + AG+RRIEAITG ++ +++L+ A +K + N+ R+E + E + L Sbjct: 692 LSESGVAAGVRRIEAITGDNVFAYYSNMEKELEEAAKVVKSTPANLKERLEHLIAEMKAL 751 Query: 771 QLIHAKRKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q + K + + L ++ DVN ++ + VD L+ + D+L++K+ G+I Sbjct: 752 QSENESLKSKAAKDALGDVMDQVVDVNGIKLLATSVDGVDMNGLRDLGDSLKEKLGEGVI 811 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGN 883 +L S E K +++ + T+ + +A +L + +++KV GGGGGRP+MAQ+GG N Sbjct: 812 VLAS-SNEGKVNLVAMATDAAIKSGAHAGNLIKAIASKVG--GGGGGRPNMAQAGGKNPA 868 Query: 884 KADQAIAGVASFL 896 AIA V L Sbjct: 869 GIPDAIASVKDAL 881 >gi|289810694|ref|ZP_06541323.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 603 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 304/637 (47%), Positives = 409/637 (64%), Gaps = 44/637 (6%) Query: 13 EFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGG 72 +F GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y TT Q+CVRAGG Sbjct: 1 DFSYSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGG 60 Query: 73 KHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVY 130 KHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY Sbjct: 61 KHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFALPKERLWVTVY 120 Query: 131 DEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECI 183 + D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+EIF+D G+ I Sbjct: 121 ETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHI 180 Query: 184 PGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER+A VLQ + Sbjct: 181 WGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNS 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP+NE RGYVLR Sbjct: 241 NYDIDLFRTLIEAVAKVTGSTDLGNKSL--RVIADHIRSCAFLVADGVLPSNENRGYVLR 298 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + +LG E L+ L MGSA EL + + +E+ L++E+E+F +TL Sbjct: 299 RIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTL 358 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + +D F A+ Sbjct: 359 ERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAM 416 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EEQR RAR S G G+ I A++F GYD L Sbjct: 417 EEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHLE------------------ 452 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 ++ V A+ G+ VE +GQ+ VV DQTPFYAE+GGQ+GD G G G Sbjct: 453 -----LNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFA 507 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 + D QK + I H + G L+ ++ +D R ++ +NHSATHL+H AL +LG Sbjct: 508 VDDTQKYGQAI-GHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLG 566 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 +HV+Q GS ++ LRFD +H++ + +E++ +ED V Sbjct: 567 THVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLV 603 >gi|319901112|ref|YP_004160840.1| alanyl-tRNA synthetase [Bacteroides helcogenes P 36-108] gi|319416143|gb|ADV43254.1| alanyl-tRNA synthetase [Bacteroides helcogenes P 36-108] Length = 872 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 350/920 (38%), Positives = 516/920 (56%), Gaps = 82/920 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PGS +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHVDSRTEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQYNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G Y N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIADMAGTTYGKNEQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG +YPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYRLLPVLIENMGGSYPELIAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LI + ++ E++ F +TL+ G+ LLD ++ GK E+ +G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEV-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ D+ FN +E+Q+SRAR ++ + +G W +LKE G T+F+GYD Sbjct: 418 LILRENGMTA-DLNEFNAEMEQQKSRAR-NAAAIETGD----WITLKE--GTTEFVGYD- 468 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 F + + +L + I Q+ + + ++V D+TPFYA Sbjct: 469 -----FTEYETSILR--------------YRQIKQKNQTL--------YQIVLDKTPFYA 501 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+GDTG + + + + D KK + +H I ++ E ++ +D R Sbjct: 502 ESGGQVGDTGVLVSEFETIDVIDT-KKENNLPIH--ITKKLPEHLEAPMMACVDTDKRAA 558 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T EL+ IE N Sbjct: 559 CAANHSATHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEELRQIEHIANAK 618 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCGGT 697 I N+P+ R M EDA GA AL G KY D VRV+ SVE+ CGGT Sbjct: 619 IRANIPLKEYRDMPIEDAKELGAIALFGEKYGDHVRVIQFGSSVEF----------CGGT 668 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV++TG I ++ IVSESS+ AG+RRIEA TG R + + L+ L + + ++ Sbjct: 669 HVAATGNIGMVKIVSESSVAAGVRRIEAYTGARVEEMMDTIQDTLRDLKALFN-NAPDLA 727 Query: 758 GRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVM 813 G + + EE K Q+ ++ + ++D + I +VN + I + + ++ +K++ Sbjct: 728 GTIHKYIEENAGLKKQVEDFMKEKESQLKDKLMNSIQEVNGVKVIKFCAPLPAETVKNIA 787 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRP 872 L+ +I + + G E K + ++++++L+ A +L + +AK++ GGGGG+P Sbjct: 788 FQLRGQITEDLFFVAGTEYEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGGGQP 846 Query: 873 HMAQSGGPNGNKADQAIAGV 892 H A +GG N + + A+ V Sbjct: 847 HFATAGGKNVDGLNAAVDKV 866 >gi|193214313|ref|YP_001995512.1| alanyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110] gi|193087790|gb|ACF13065.1| alanyl-tRNA synthetase [Chloroherpeton thalassium ATCC 35110] Length = 887 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 357/913 (39%), Positives = 516/913 (56%), Gaps = 73/913 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF HE++ S+ +IP +DPTL+FTN+GM FK++F G Y QK Sbjct: 6 IRQAFLDFFTSKQHEIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGIGSRPYTRAADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT + L + RLY Sbjct: 66 CIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAITWAWELLTDVWKLPKDRLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 TVY +D+EAF+LWK + ++A I R DNFW M ETGPCGPCSEI D G Sbjct: 126 ATVYKDDDEAFELWKSETDIAASHIQRHGEKDNFWEMGETGPCGPCSEIHIDLTPDKSGA 185 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 ++ E IEIWNLVF+Q+ + + LP +DTGMG ER+A VLQ KT+NYD Sbjct: 186 ALVNAGRPE-VIEIWNLVFIQYNRDAAGKLHPLPAKHVDTGMGFERIAAVLQGKTSNYDS 244 Query: 247 DLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 D+F +++ +TG Y E + + RV+ DH+R+ +F IADG P+NEGRGYVLR Sbjct: 245 DVFTPILKKIGDITGKTYGGSMESDTDMAMRVLADHIRTLAFAIADGGTPSNEGRGYVLR 304 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RR + YAR LG EP + L LC MG +PEL++ + +IE+ +++E+E F +TL Sbjct: 305 RILRRGVRYARQLGQNEPTLYKLTEVLCETMGDVFPELVERRQVIEQVIKAEEESFLQTL 364 Query: 363 DRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 DRG+ + +GV L K ++++G AFKLYDT+G PLD+ + + GL+ +D F Sbjct: 365 DRGIEIFNGVTEKLKKSGGKVIDGADAFKLYDTYGFPLDLTRLMAEEIGLS-VDEDGFLA 423 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 ++EQ+ RAR + E +++ + T+F GY+ L Sbjct: 424 NMKEQKDRARKDRKEKSAVAEESGEWTIFAETLKTEFSGYETLE---------------- 467 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 Q+ I +G+K+ +V ++TPFYAE+GGQ GD+G D Sbjct: 468 ----------------QKSRIARAKKAGEKLLLVLEKTPFYAESGGQQGDSGEIETDAFS 511 Query: 541 LQITDVQKKAEGIFVHHAI-------------VERGILRTEMSLV--LTIDYQNRRQLSI 585 I+D QK EG V H + +E L SL ++ + R + Sbjct: 512 FHISDTQK--EGDLVLHIVDKITDKESGDAVAIENFDLEKLSSLEADAKVNAETRGATAR 569 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG HV Q GS + P+ LRFD +H + ++ + IE VN I Sbjct: 570 NHTATHLLHEALREVLGEHVQQKGSLVGPERLRFDFSHFERVSEEAMAQIEQIVNAQIRM 629 Query: 646 NLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 V + EDA GA A G KY D VRVV V +S CGGTH+ + GE Sbjct: 630 AKAVKKHADVPFEDAKKMGALAFFGDKYGDFVRVVEVPG-----YSVEFCGGTHLDNIGE 684 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763 I LL IVSESSI +GIRR+EA+TG+ A KL++L L S+ V+ RV++I Sbjct: 685 IGLLKIVSESSIASGIRRVEAVTGKVAEDLFRSDRRKLQALRDTLSAQSEDAVLERVQKI 744 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 EE ++L+ K +L+L L + + V ++ + + ELK + + + Sbjct: 745 LEEKKELEKEVEKLRLELAASALDGLVKNAETLNGVKILAAEVKVSGADELKQLGEMARS 804 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQ 876 K+ SG+++L G + +KAS++ V++D++ + + + +L +V + GGGGGRP++A Sbjct: 805 KLGSGVLLL-GAALGEKASLVAAVSDDVI-KSHKLQAGKLVGEVAKVVKGGGGGRPNLAT 862 Query: 877 SGGPNGNKADQAI 889 +GG + K +AI Sbjct: 863 AGGKDPQKLSEAI 875 >gi|55981800|ref|YP_145097.1| alanyl-tRNA synthetase [Thermus thermophilus HB8] gi|62296736|sp|P74941|SYA_THET8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|55773213|dbj|BAD71654.1| alanyl-tRNA synthetase [Thermus thermophilus HB8] Length = 882 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 346/854 (40%), Positives = 503/854 (58%), Gaps = 59/854 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 + IR FL FF+ GH LPS SLIP +DP+L+FT++GM P K F G KP+ Sbjct: 2 RTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGA-KPIFGGRE 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ VTT Q+C+R G D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI AW+ LT+ Sbjct: 61 WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPC 172 LD RL++TV+++D+EA+++W+ + G+ ++I R ++N+W + GP GPC Sbjct: 117 LKLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176 Query: 173 SEIFFDQGEC--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----ILPKMSIDT 226 SEIF+D+G P ++ G+R++EIWNLVF Q+++Q LP+ +IDT Sbjct: 177 SEIFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 GMGL R+A +LQ+ + Y D F +IQ +++G YEG V+HRVI DH+R+ + Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 +DG +N GRGYV+RR++RRA+ + LLG ++P + L P + +G YPE+ + Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ +R E+ERF +TL+ GL LD +LS L E+L G AF+LYDT+G PLD+ +I Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLL 463 RG G+D F +A+EEQ+SR+RA ++ +K L+E Y GAT+F+GY+ L Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRA-AMAFEREIFKKGAQVLEELYAERGATEFLGYNAL 474 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + + +VL L G S++ EA G +V+VV D+TPFYAE Sbjct: 475 ------EAEAEVLA------LLAGDQSLL-----------EAGPGTEVQVVLDKTPFYAE 511 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G G R ++ +K GIF+H A VE G+LR + +D RR Sbjct: 512 GGGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDT 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHLLH AL +LG HV Q GS + PD LRFD TH +P+ EL+ +E VN I Sbjct: 571 ERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWI 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSST 702 + PV R M E+A GA AL G KY + VRVV VE G+ S LCGG HV T Sbjct: 631 MADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRT 690 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE- 761 GEI I SE ++ AG+RRIEA+TG+ A G +LK+LA L+V + + R+E Sbjct: 691 GEIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEK 750 Query: 762 ---EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDA 815 E+ E+ R+++ + A R +Q + + + + ++E +D+K L+ D Sbjct: 751 LLAELKEKEREVESLKA-RLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADD 809 Query: 816 LQKKIQSGIIMLVG 829 L + ++L G Sbjct: 810 LVARGADVALVLSG 823 >gi|259046499|ref|ZP_05736900.1| alanine--tRNA ligase [Granulicatella adiacens ATCC 49175] gi|259036664|gb|EEW37919.1| alanine--tRNA ligase [Granulicatella adiacens ATCC 49175] Length = 914 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 356/918 (38%), Positives = 509/918 (55%), Gaps = 68/918 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FFQ+ GH++ PS+SLIP NDPTL++ NSG+ K F G E P +T Sbjct: 41 SEIRQMYLDFFQEKGHKVHPSASLIPVNDPTLLWINSGVATLKKYFDGTETPEVPRITNA 100 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHT FEM+GNFS G YFKE I AW+ LT E LD Sbjct: 101 QKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEVIPWAWEFLTSEKWLGLDP 156 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY+T Y +D E LW GL D II + DNFW + GPCGP +EIF+D+GE Sbjct: 157 DRLYVTYYPKDPETKALWMDKVGLPEDHIIPV--EDNFWDIG-AGPCGPDTEIFYDRGEK 213 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF QF LP ++DTGMGLER+ + Sbjct: 214 YNNLAEDDPENYPGG--ENERYLEIWNLVFSQFNHMPDGTYPPLPHKNVDTGMGLERVVS 271 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--IVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +I+ E ++ G KY + V+ +VI DH+R+ SF I DG LP Sbjct: 272 VIQDTPTNFETDLFMPIIKQLESLSAGKKYNDSKELDVSFKVIADHIRAVSFAIGDGALP 331 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGY++RR++RR++ + + LG + L+P + M S YPE+ + I++ + Sbjct: 332 SNEGRGYIIRRLIRRSVMHGQRLGIQGSFLTKLVPTVAQIMHSYYPEVTENMEFIQKVIA 391 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ RF +T+ GL +L+ + + + + L+G+ AFKLYDT+G P ++ + G Sbjct: 392 NEENRFQETIHDGLSILETIFADMKASNETTLSGENAFKLYDTYGFPYELTLEYASDNGF 451 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F ++ Q+ RARA S + L++ ++F+GY Sbjct: 452 T-VDEEGFQAEMQAQKDRARAARNTETSMNVQSA--VLRDITVESEFVGY---------- 498 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + ++KAIV E+VE A ++VFD+TPFYAE GGQL D Sbjct: 499 -------------ASTTEEGVLKAIVVDDELVESAHKDAHAQLVFDRTPFYAEMGGQLAD 545 Query: 531 TGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G I D + + V+K G +H V G L+ + L +D R ++ NH Sbjct: 546 HGT-IQDANGTVVANVLQVKKAPNGQPLHTVEV-IGDLQVNAAYTLVVDASERAKIIKNH 603 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H +Q GS +TP GLRFD +H +TS EL +E VN+ I L Sbjct: 604 TATHLLHQALKDVLGTHANQAGSLVTPTGLRFDFSHFGQVTSEELAEMERIVNEKIWAGL 663 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 VVT EDA + GA AL G KY + VR+V++ G S LCGG HV++T EI L Sbjct: 664 EVVTVETTLEDAKSRGAMALFGEKYGNLVRMVNI-----GDWSIELCGGIHVANTQEIGL 718 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSES I AG+RRIEA+T + A L + LK +A +K Q VV RV + +E Sbjct: 719 FKIVSESGIGAGVRRIEAVTSKEAFDLLSHHENLLKQVAGEVKAIQLDTVVERVATLGQE 778 Query: 767 YRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQ 821 ++ AK K ++ +++ + + +VN S I +++K EL+ + D ++K Sbjct: 779 LKEANGEIAKLKAKIMKSEVADVFNNVEEVNGTSFITVALENKEMDELRQLADTWRQKGA 838 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S I +VG + KA++L+ V++D R A D+ + A + GGGGGRP MAQ+GG Sbjct: 839 SD-IFVVGTASADKANLLVAVSKDANARGLKAGDIIKAIAPAI-QGGGGGRPDMAQAGGK 896 Query: 881 NGNKADQAIAGVASFLKK 898 N QA + +L K Sbjct: 897 NPAGIPQAFELLKEYLAK 914 >gi|304385238|ref|ZP_07367583.1| alanine--tRNA ligase [Pediococcus acidilactici DSM 20284] gi|304328445|gb|EFL95666.1| alanine--tRNA ligase [Pediococcus acidilactici DSM 20284] Length = 881 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 350/920 (38%), Positives = 523/920 (56%), Gaps = 76/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SEIRRMYLDFFKSKGHVVEPSASLIPKDDPTLLWVNSGVATMKKYFDGSVVPEVPRLTSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHT FEMLGNFS G YFKE AI AW+LLT + FD+D Sbjct: 67 QKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWFDMDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +DEEA K+W + +G+ I+ DNFW + E GP GP SEIF+D+GE Sbjct: 123 EKLYVTVYPKDEEAKKIWLE-TGVDPSHIVE--AEDNFWDIGE-GPSGPDSEIFYDRGEE 178 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ER++EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 179 FNNLADDDPENYPGG--ENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVVS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 V Q+ N++ DLF +I E+++G KY + N+ V +VI DH R+ +F I DG +P+ Sbjct: 237 VFQDAPTNFETDLFLPIIHEVEKLSGKKYGVDKNDDVPFKVIADHARAITFAIGDGAIPS 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV+RR++RRA+ + + L +P + ++P + M YPE++ K IE+ ++S Sbjct: 297 NEGRGYVIRRLLRRAVMHGKKLNINKPFLYQMVPVVGKIMEDYYPEVLADKDYIEKVIKS 356 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E++RF +TL GL LL+ +++ D ++++G AF+L+DT+G PL++ ++ +G+ Sbjct: 357 EEDRFNETLTDGLELLNSIIADTKADHSKVISGKDAFRLFDTYGFPLELAKEYAEDQGME 416 Query: 412 GIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F +++Q+ RAR A S G + LK ++++GYD L+ Sbjct: 417 -IDEAGFADEMQKQKERARSARSNAKSMGVQSDLLTDLKT---PSEYVGYDTLK------ 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 +D ++++K I+Q ++ + G+ V+FD TPFYAE GGQ+ D Sbjct: 467 -----------VD-----AAVLKDIIQDDQLTDTVNPGE-ARVLFDVTPFYAEMGGQVAD 509 Query: 531 TGC-AIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G DG + ++ DVQ G +H +R + E S L +D ++ NH+ Sbjct: 510 QGVIEDADGNVVAEVVDVQHAPNGQNLHTIKAKREMHAGE-SFTLIVDRAFHLKVEKNHT 568 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H Q GS + P LRFD TH +T +L+ +E+ +ND I +P Sbjct: 569 ATHLLDQALRDVLGEHTHQAGSLVEPGYLRFDFTHFGQVTDEDLQKVEEIINDKIYDEIP 628 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + E GA AL KY +VRVVSV G +S CGGTHV +T EI L Sbjct: 629 VTTVETDLETGKKMGAIALFDDKYGKKVRVVSV-----GDYSREFCGGTHVKNTNEIGLF 683 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 IVSES + AG+RRIEA+T Q A L G++ L+ A LK +Q +V +VE++ + Sbjct: 684 KIVSESGVGAGVRRIEAVTSQAALEFLNGEEALLQKAAGLLKSAQVKDVPAKVEQLQAQV 743 Query: 768 RKL-QLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSK---ELKSVMDALQKK 819 + L Q I+ +L+ + I D +N I +EV +L+ + D + K Sbjct: 744 KDLNQTIN---QLEAKIAQAEVANIYDQVQEINGFRLITAEVQVSGMDQLRQMADDWKTK 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQS 877 QS +++L G +KA+++ V + + A DL + ++ KV GGGGGRP+MAQ+ Sbjct: 801 DQSDVLVL-GAKIGEKANLIAAVKDPFVKEGLKAGDLIKAIAPKV--NGGGGGRPNMAQA 857 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG K ++A+ + +L+ Sbjct: 858 GGSAPEKINEALKAASEWLE 877 >gi|323173022|gb|EFZ58653.1| alanyl-tRNA synthetase [Escherichia coli LT-68] Length = 714 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 325/741 (43%), Positives = 453/741 (61%), Gaps = 54/741 (7%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFSFG YFK AIQ AW+LLT E F L + RL++TVY+ D+EA+++W+K G+ + Sbjct: 1 MLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 +IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEIW Sbjct: 61 RIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LIQA +VTG Sbjct: 121 NIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTG 180 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 N + RVI DH+RS +FLIADG++P+NE RGYVLRRI+RRA+ + +LG E Sbjct: 181 ATDLSNKSL--RVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+ L MGSA +L + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 239 FYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGD-T 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 298 LDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADYN 355 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 I A++F GYD L ++ V A+ G+ Sbjct: 356 AMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGKA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V+ +GQ+ VV DQTPFYAE+GGQ+GD G G + D QK + I H + Sbjct: 388 VDAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGANFSFAVEDTQKYGQAIG-HIGKLA 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HVSQ GS + LRFD Sbjct: 447 AGSLKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVSQKGSLVNDKVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H++ + E++++ED VN I +NLP+ T IM+ E A A GA AL G KY++RVRV+S+ Sbjct: 507 SHNEAMKPEEIRAVEDLVNAQIRRNLPIETNIMDLEAAKAKGAMALFGEKYDERVRVLSM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTH S TG+I L I+SES AG+RRIEA+TG+ A + + ++ Sbjct: 567 -----GDFSTELCGGTHASRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDR 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSH 799 L +A LK N+ +V + E R+L+ + K Q ++ + K DVN + Sbjct: 622 LSEVAHLLKGDSNNLADKVRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKL 681 Query: 800 IISE---VDSKELKSVMDALQ 817 ++SE V+ K L++++D L+ Sbjct: 682 LVSELSGVEPKMLRTMVDDLK 702 >gi|56963357|ref|YP_175088.1| alanyl-tRNA synthetase [Bacillus clausii KSM-K16] gi|59798485|sp|Q5WHM8|SYA_BACSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56909600|dbj|BAD64127.1| alanyl-tRNA synthetase [Bacillus clausii KSM-K16] Length = 876 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 358/915 (39%), Positives = 522/915 (57%), Gaps = 70/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +S+R F++FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 ASVRQMFIDFFKEKGHSVEPSASLVPFEDPSLLWINSGVATLKKYFDGRVIPENPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE+AI+ AW+ LT K Q Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEQAIEWAWEFLTDKKWIGFPQ 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 RL +TV+ EDEEA++ W + GL ++IIR+ NFW + E GP GP SEIF+D+G Sbjct: 123 ERLSVTVHPEDEEAYRYWHQHIGLPEERIIRL--EGNFWDIGE-GPSGPNSEIFYDRGPE 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+EIWNLVF QF LPK +IDTGMGLER Sbjct: 180 YGDDPNDPELYPGG------ENERYLEIWNLVFSQFNHNADGTYTPLPKKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 M +V+Q+ N++ DLF +I+A+E + Y+ + +VI DH+R+ +F + DG LP Sbjct: 234 MVSVIQDTPTNFETDLFMPIIEATEALASTTYKEADTA-FKVIADHIRTVAFAVGDGALP 292 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ +A+ +G P M L+P + M YPE+ + I +R Sbjct: 293 SNEGRGYVLRRLLRRAVRFAKSIGIDRPFMYELVPVVGAIMKDFYPEVADKQDFIARVIR 352 Query: 353 SEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +TL+ GL +L ++ + E + G+ AF+LYDT+G P+D+ ++ + GL Sbjct: 353 TEEERFHETLNEGLAILSDIIEKAKATNKETIAGEDAFRLYDTYGFPIDLTEEYVHDEGL 412 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F+Q +E+QR RARA S + ++ F E + F+GY+ Sbjct: 413 T-VDRAGFDQEMEQQRQRARAARQESASMSVQEDVFG--EVKTPSVFVGYEHTE------ 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 +++ +V+ E VE+AV G ++ D+TPFYAE+GGQ+ D Sbjct: 464 -----------------TDAVITTLVRGKEKVEQAVQGDVIQFFLDETPFYAESGGQVAD 506 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + D + + DV+K G +H A V G + T I+ + R + NH+AT Sbjct: 507 RGMIVTDTGQAVVKDVKKAPNGQHLHTAEVTIGEISTGQQASARIEVRERLDIVKNHTAT 566 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL +LG HV+Q GS ++ + LRFD +H +T EL+ IE+ VN+ + Q LPV Sbjct: 567 HLLHQALKDVLGEHVNQAGSLVSSERLRFDFSHFGQVTPNELQQIEEIVNEKVWQALPVD 626 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 I E+A A+GA AL G KY VRVV V G +S LCGG HV +T EI L I Sbjct: 627 ISIQRLEEAKAAGAMALFGEKYGSEVRVVRV-----GDYSLELCGGCHVRNTAEIGLFKI 681 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRK 769 SES I AG+RRIEA+T + A L Q LK A LK + +V R+E + EE RK Sbjct: 682 TSESGIGAGVRRIEAVTSKGAYQFLSEQTAILKDAAERLKAKRLSDVPQRIESLQEELRK 741 Query: 770 LQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 Q + +L N+ D +I V ++ + D++ L+S++D L++ + Sbjct: 742 AQRENESLTAKLGQAEAGNLND-QVKEIGGVAVIAAQVDAKDTEALRSMVDTLKQAHEKA 800 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + K A V V + + F+A L + ++A+ GGGGGRP MAQ+GG + Sbjct: 801 VIVLAAKTGNKLAFVAGVTKPAIAEGFHAGKLIKEVAARTG--GGGGGRPDMAQAGGKDP 858 Query: 883 NKADQAIAGVASFLK 897 K D+A+A V ++K Sbjct: 859 AKLDEALAYVHEYVK 873 >gi|62185445|ref|YP_220230.1| alanyl-tRNA synthetase [Chlamydophila abortus S26/3] gi|81312406|sp|Q5L512|SYA_CHLAB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|62148512|emb|CAH64283.1| putative alanyl-tRNA synthetase [Chlamydophila abortus S26/3] Length = 875 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 333/895 (37%), Positives = 503/895 (56%), Gaps = 51/895 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 +++R+ FL+F+ H ++ SS + P NDP+++FTN+GM FK+IF +E Y TT Sbjct: 4 NTLRSNFLKFYANRHHTIVSSSPVFPHNDPSILFTNAGMNQFKDIFLNKETVSYSRATTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDLDNVG T+RH TFFEMLGNFSFG YFKE+AI AW++ F+ D R Sbjct: 64 QKCIRAGGKHNDLDNVGHTSRHLTFFEMLGNFSFGDYFKEQAIAFAWEVSLSVFNFDPDR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 +Y TV+++D+EAF LW++ L +++I R+T DNFWSMAETGPCG CSE+ FD+GE Sbjct: 124 IYATVHEKDDEAFALWEQ--HLPSERIFRLTDKDNFWSMAETGPCGYCSELLFDRGESFG 181 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P EGER++E WNLVFM+F + + LP +DTG GLER+ +++ Sbjct: 182 TATSPLEDSEGERFLEYWNLVFMEFNRSAEGSLLALPNKHVDTGAGLERLVSIISGTNTV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ D+ + LI +E ++G KY + + RVI DH+RS SF I DG++P N RGYVL Sbjct: 242 FEADVLRLLISKTETLSGEKYHADEPLGAAFRVIADHVRSLSFAIVDGLIPGNTERGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R+I+RR++ Y + LG+T+P + ++PAL MG AYPEL + I+E + E+E + K+ Sbjct: 302 RKILRRSVNYGKRLGFTQPFLAEIVPALVDAMGEAYPELRLSVSQIQEVMTIEEENYFKS 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL VL ++G+ AFKL DT+GLPLD + +L +D+ +F Q Sbjct: 362 LHRGGNLLQQVLKSSSSSSTISGEDAFKLKDTYGLPLDEIA-LLAKDYNFSVDLDTFYQL 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +E + R+R + + T+ ++ +L +T F+GY L F Sbjct: 421 EKEAKERSRKNVIK-SHNATDTVYDALSLGENST-FVGYHDLSCDTF------------- 465 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG---CAIGDG 538 ++AI++ GE V +K ++ +TPFYAE GGQ+GD+G C+ G Sbjct: 466 ----------IEAIIKNGEQVSYLKEKEKGILILKETPFYAEKGGQVGDSGEIFCSDGTF 515 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 I ++ G+ +HH V +G L + ++ + R+ +S NH+ HLLH AL Sbjct: 516 I---VSHTTSPKAGMVIHHGEVSQGQLHSAQAVTAQVHCLRRKNISNNHTGCHLLHKALE 572 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LG H+ Q GS + +R D TH K I +L SIE VN+ I +N V TR D Sbjct: 573 MTLGDHIRQAGSFVDDTKIRLDFTHPKAIAPEDLASIELLVNEKIRENHRVETREAAYSD 632 Query: 659 AIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 + S G KY+D VRVVS + S LCGGTH TG++ I+ E ++ Sbjct: 633 VMNSKEIKQFFGDKYSDVVRVVSAGF------SHELCGGTHADFTGDLGYFRILKEHAVA 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-KLQLIH-A 775 GIRRIEA+TG+ A ++ L +A L+ + ++ +++ I +E + + +LI Sbjct: 687 TGIRRIEAVTGKEAEVLARQDNQDLNEIALILQSPRDQILNKLQNILDEKKEQTKLISDL 746 Query: 776 KRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + KL ++ D C +I DV++ + + E +S L+ + L +KI ++ L K Sbjct: 747 ENKLIYSLLDKVIDRCQQIEDVSYFIYHLPESESHRLQQYANCLHQKIPVRLVSLWTTQK 806 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 K + +++DL+ + A DL ++ GG GG+ AQ + +AD Sbjct: 807 NGKYIIFSRISDDLVKQGLKAKDLLQVLLTPC-GGRWGGKDIFAQGSADSLPQAD 860 >gi|261418428|ref|YP_003252110.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC61] gi|319767612|ref|YP_004133113.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC52] gi|261374885|gb|ACX77628.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC61] gi|317112478|gb|ADU94970.1| alanyl-tRNA synthetase [Geobacillus sp. Y412MC52] Length = 878 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 358/915 (39%), Positives = 525/915 (57%), Gaps = 68/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P + Sbjct: 7 AQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPENPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSDKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +TV+ EDEEA+ +W+ GL ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E +RY+E+WNLVF QF LPK +IDTGMGLERM ++L Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q+ N++ DLF +I+A+EQ+ G +Y + + V +VI DH+R+ +F I DG LP+NE Sbjct: 239 QDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAIGDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + I +R+E+ Sbjct: 299 GRGYVLRRLLRRAVRYAKHIGIERPFMYELVPVVGEIMHDYYPEVKEKADFIARVIRTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL--- 410 ERF +TL GL +L V+ + +++ G+ AF+LYDT+G P+++ ++ G+ Sbjct: 359 ERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEYAAEAGMTVD 418 Query: 411 -AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 AG + Q + +R S+ + G L + ++F+GYD L + Sbjct: 419 HAGFEREMERQRERARAARQDVDSMQVQGGV-------LGDIKDESRFVGYDELVAA--- 468 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S V AIV+ G +VEE +G++ +++ D TPFYAE+GGQ+ Sbjct: 469 --------------------STVIAIVKDGRLVEEVKAGEEAQIIVDVTPFYAESGGQIA 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + + DVQK G +H IVE G ++ +D R ++ NH+A Sbjct: 509 DQGVFESETGTAVVKDVQKAPNGQHLHAIIVEYGTVKKGSRYTARVDEAKRMRIVKNHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN+ I ++LPV Sbjct: 569 THLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVNEQIWKSLPV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 E+A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 629 DIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVPNTSAIGLFK 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IVSES I AG RRIEA+TG+ A + Q L+ A LK S + R++ ++ E ++ Sbjct: 684 IVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARLDGLFAELKE 743 Query: 770 LQLIH---AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823 L+ + A R + E L+ ++ DVN + + ++V D +L+++ D L++K+ + Sbjct: 744 LERENESLASRLAHMEAEHLT-RQVKDVNGVPVLAAKVQANDMNQLRAMADDLKQKLGTA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L ++ K ++ VT+DL+ + F+A L + A GGGGGGRP +AQ+GG + Sbjct: 803 VIVLAS-AQGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRC-GGGGGGRPDLAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 +K +A+ V +++K Sbjct: 861 SKVGEALGYVETWVK 875 >gi|297624147|ref|YP_003705581.1| alanyl-tRNA synthetase [Truepera radiovictrix DSM 17093] gi|297165327|gb|ADI15038.1| alanyl-tRNA synthetase [Truepera radiovictrix DSM 17093] Length = 917 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 339/876 (38%), Positives = 498/876 (56%), Gaps = 76/876 (8%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 ++ ++R FLEFF+ GH + PS+ L +DP L+F +GM FK F G Sbjct: 22 TSPDALRRKFLEFFRSKGHLIYPSAPL-KSDDPGLLFNVAGMQQFKPYFQGATPKFPGVE 80 Query: 57 -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 V+ V T QKC+RAGGK +D++NVGRT RHHTFFEMLGNFSFG YFK AI AW+ LT Sbjct: 81 GVWPRVATSQKCMRAGGKDSDIENVGRTRRHHTFFEMLGNFSFGDYFKREAIGWAWEFLT 140 Query: 116 KE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGP 168 LD RLY TVY +D+EA+ +WK GL ++ R +NFW +GP Sbjct: 141 APEWLGLDPERLYATVYLDDDEAYNIWKDEVGLPEARLSRFGEGENFWPANAIKDERSGP 200 Query: 169 CGPCSEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 CGPCSEIF+D+G P ++ G+R++EIWNLVF QF +N LP+ +IDT Sbjct: 201 CGPCSEIFYDRGPAYGSPDETGPNTGSGDRFVEIWNLVFTQFNLENGV-LTPLPQQNIDT 259 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 G GLER A V+ + + Y +LF+ +I+ E+++G+ Y V+HR+I DH+RS S I Sbjct: 260 GAGLERFAAVIADVKDAYATELFQPIIRRLERLSGVPYRDLESVHHRIIADHVRSVSMCI 319 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADGILPAN+G GYV++ ++RRA A LLG EP++ L+ + MG AYPE+ A+ Sbjct: 320 ADGILPANDGAGYVIKMLLRRASRQAYLLGLREPVLHQLVSGVVEAMGEAYPEVKDAQAR 379 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE +R+E+E F +TL+ G+ + G+L LG D L GDVAF L+ T+G PLD+ +++ Sbjct: 380 IEGIVRAEEESFLRTLESGIARVSGLLDELGGD-TLPGDVAFDLWQTYGFPLDLTEEMAQ 438 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLR 464 RG+ +D + A E RS +RA + G G+ G T+ ++ L E +G T F+GY Sbjct: 439 ERGVR-VDREGYAHAREAARSLSRA-ARGEGALFGGTD-VFGQLAEAHGETAFVGYS--- 492 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V+A+VQ GE V EA G V+VV D TPFYAE Sbjct: 493 --------------------ARDAEAAVRALVQGGEAVSEAGEGTHVQVVLDTTPFYAEG 532 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKA---------EGIFVHHAIVERGILRTEMSLVLTI 575 GGQ+GD G + + D + KA G+ VHHA V RG L+T + + Sbjct: 533 GGQVGDAGV-----LEWRGGDHEGKALVTTTTKTKGGVVVHHARVLRGTLKTGQRVRAAV 587 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D +R + +H+ATHLLH AL ++LG+HV+Q GS + P+ LRFD +H +P++ +EL+ + Sbjct: 588 D-PSRTETEKHHTATHLLHAALRSVLGTHVAQAGSLVAPERLRFDFSHPQPLSESELRRL 646 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV--EYEDGGVHSSAL 693 E VN I + V R++ E+A A+GA L G KY VR+VSV E + S+ L Sbjct: 647 EALVNRWIQADFTVSWRVVPLEEARAAGAMMLFGEKYGANVRMVSVTPERDPKSSVSTEL 706 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHV+ TG + + I E ++ AG+RR+EA+ G+ A S+L L + A L V+ Sbjct: 707 CGGTHVARTGTLGVFVITGEEAVSAGVRRVEALVGEAALSYLADLRATLAAAAKSLGVTP 766 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH---KIADVNFMSHIISE---VDSK 807 G + R+E + + + Q A+ + +L + ++++ S+ +++ +D+ Sbjct: 767 GELGPRLERLQSDLKAAQRTAAELRDRLAAAQTAGESGLEVSEAGGFSYAVAQLGGLDAS 826 Query: 808 ELKSVMDALQKK-------IQSGIIMLVGISKEKKA 836 L+ D L + + SG +++V S +A Sbjct: 827 ALRGAADRLLARSGADLVVVGSGPLLVVKASDAAQA 862 >gi|46199782|ref|YP_005449.1| alanyl-tRNA synthetase [Thermus thermophilus HB27] gi|48428512|sp|P61707|SYA_THET2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|46197409|gb|AAS81822.1| alanyl-tRNA synthetase [Thermus thermophilus HB27] Length = 882 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 346/854 (40%), Positives = 503/854 (58%), Gaps = 59/854 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 + IR FL FF+ GH LPS SLIP +DP+L+FT++GM P K F G KP+ Sbjct: 2 RTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGA-KPIFGGRE 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ VTT Q+C+R G D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI AW+ LT+ Sbjct: 61 WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPC 172 LD RL++TV+++D+EA+++W+ + G+ ++I R ++N+W + GP GPC Sbjct: 117 LRLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176 Query: 173 SEIFFDQGEC--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----ILPKMSIDT 226 SEIF+D+G P ++ G+R++EIWNLVF Q+++Q LP+ +IDT Sbjct: 177 SEIFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 GMGL R+A +LQ+ + Y D F +IQ +++G YEG V+HRVI DH+R+ + Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 +DG +N GRGYV+RR++RRA+ + LLG ++P + L P + +G YPE+ + Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ +R E+ERF +TL+ GL LD +LS L E+L G AF+LYDT+G PLD+ +I Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLL 463 RG G+D F +A+EEQ+SR+RA ++ +K L+E Y GAT+F+GY+ L Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRA-AMAFEREIFKKGAQVLEELYAERGATEFLGYNAL 474 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + + +VL L G S++ EA G +V+VV D+TPFYAE Sbjct: 475 ------EAEAEVLA------LLAGDQSLL-----------EAGPGTEVQVVLDKTPFYAE 511 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G G R ++ +K GIF+H A VE G+LR + +D RR Sbjct: 512 GGGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDT 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHLLH AL +LG HV Q GS + PD LRFD TH +P+ EL+ +E VN I Sbjct: 571 ERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWI 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSST 702 + PV R M E+A GA AL G KY + VRVV VE G+ S LCGG HV T Sbjct: 631 MADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRT 690 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE- 761 GEI I SE ++ AG+RRIEA+TG+ A G +LK+LA L+V + + R+E Sbjct: 691 GEIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEK 750 Query: 762 ---EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDA 815 E+ E+ R+++ + A R +Q + + + + ++E +D+K L+ D Sbjct: 751 LLAELKEKEREVESLKA-RLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADD 809 Query: 816 LQKKIQSGIIMLVG 829 L + ++L G Sbjct: 810 LVARGADVALVLSG 823 >gi|197301771|ref|ZP_03166841.1| hypothetical protein RUMLAC_00497 [Ruminococcus lactaris ATCC 29176] gi|197299211|gb|EDY33741.1| hypothetical protein RUMLAC_00497 [Ruminococcus lactaris ATCC 29176] Length = 879 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 366/923 (39%), Positives = 525/923 (56%), Gaps = 87/923 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH ++ S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNQLRKMFLEFFESKGHLVMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI+ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY+ED+EAF +W K G+ A++I R DNFW +GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYEEDDEAFDIWNKKMGIPAERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + E +RY+EIWN VF QF L + +IDTGMGLER+A ++Q+ Sbjct: 181 GCGKPGCTVGCECDRYMEIWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLACIVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +DID K L +++G +Y + V+ RV+ DH+RS +F+I+DGILP+N GRGY Sbjct: 241 SMFDIDTMKALRDHVCRLSGKQYGTDHETDVSLRVVTDHVRSVTFMISDGILPSNSGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG ++ L + YPEL + K I + E+ F Sbjct: 301 VLRRLLRRACRHGKLLGIEGAFLVELATTVIEGSKDGYPELEEKKEFIFNVIAKEEANFN 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + + K +++L+G+ AF+LYDT+G P+D+ +IL +GL D Sbjct: 361 KTIDQGLAILADMEAEMEKKGEKVLSGENAFRLYDTYGFPIDLTSEILEEKGLT-YDEEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEK--IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A EEQR+++ + G S T ++ ++ L + G T+F+GYD L Sbjct: 420 FKKAQEEQRAKSEG-TFGTHSYTGKEVSVYDELDAEIG-TEFVGYDHLT----------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S V A+ + EIV+ G+K ++ +QTPFYA GGQ D G Sbjct: 467 ------------FDSKVSALTTEDEIVDALSDGEKGTIIVEQTPFYATMGGQEADKG--- 511 Query: 536 GDGIRLQITDVQKKAEGIFV-------------HHAIVERGILRTEMSLVLTIDYQNRRQ 582 V + AEG FV H V +G+++ ++ L ++ +NR Sbjct: 512 ----------VIRTAEGEFVVEDCIHLAGTKVGHIGHVTKGMIKIGDTVTLEVNAKNRAL 561 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHSATHLL AL T+LGSHV Q GS + D LRFD TH +T ELK +E+ VN+ Sbjct: 562 TERNHSATHLLQKALRTVLGSHVEQAGSFVNEDRLRFDFTHFSAVTPEELKKVEEIVNEQ 621 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I L VVT+ + E+A +GA AL G KY D VRVV D G S CGGTHV +T Sbjct: 622 IQNALEVVTKNLPIEEARKTGAQALFGEKYGDVVRVV-----DMGGFSVEFCGGTHVKNT 676 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 EIM L I+SES + AG+RRIEA+T + + LK A +K S N+ ++ Sbjct: 677 SEIMALKIISESGVAAGVRRIEALTSDGLMKYYAEMEHLLKEAAQLIKASPENLAEKITH 736 Query: 763 IWEEYRKL--QLIHAKRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + E + L ++ K K+ NV D ++ V ++ + VD EL+ + D Sbjct: 737 LQAENKALKGEVDSLKSKMAQEAAGNVLD-RVKEVKGVKLLAAQLDGVDMNELRELGDQF 795 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K+ G+++L E K S++ VT + + +A +L + A ++ GGGGGGRP+MA Sbjct: 796 KEKLGEGVVVLAS-GNEGKVSLMATVTNGAMKQGAHAGNLVKAIAGLV-GGGGGGRPNMA 853 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q+GG N AG+A L+K Sbjct: 854 QAGGKN-------PAGIAQALEK 869 >gi|307721802|ref|YP_003892942.1| alanyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294] gi|306979895|gb|ADN09930.1| alanyl-tRNA synthetase [Sulfurimonas autotrophica DSM 16294] Length = 850 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 350/908 (38%), Positives = 514/908 (56%), Gaps = 83/908 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF+ H +PS+ L+P +D TL+F N+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IREEYLKFFESKQHTRVPSAPLVP-DDATLLFNNAGMVPFKSIFTGEVPRPANPRATSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ LD+ +L Sbjct: 62 TCIRAGGKHNDLENVGHTARHHTFFEMLGNFSFGDYFKEEAIAYAWEFITEVLHLDKDKL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 ++TV++ D+EA +WKK ++A++I+R+ DNFWSM +TGPCGPCSEIF+DQG E Sbjct: 122 WVTVHESDDEAEAMWKK--HIAAERIMRLGDKDNFWSMGDTGPCGPCSEIFYDQGAEHFT 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNK-QERFILPKMSIDTGMGLERMATVLQEKTNN 243 G EG+R++EIWNLVFMQ+E + K +R L SIDTGMGLER+ + + +N Sbjct: 180 GPEDYMGGEGDRFLEIWNLVFMQYEVKEKGGQRVPLAHPSIDTGMGLERVVAIKEGALSN 239 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 Y LF +I+ E + G +Y + ++RVI DH+R++ FL+A G+ +NEGRGYVLRR Sbjct: 240 YGSSLFMPIIRKVEDMIGKEYIYASGASYRVIADHIRTTVFLLAQGVNFSNEGRGYVLRR 299 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 I+RRA+ + LLG+ EP M L+ L MG Y L ++E + E+ RF KT++ Sbjct: 300 ILRRAVRHGYLLGFREPFMYKLVDTLVDIMGGEYEYLNTKANAVKEQIELEEARFFKTIE 359 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 G+ L + + + +G+VAFKLYDT+G PLD+ +D+L + L+ +D F + + Sbjct: 360 SGIALFN--MEMQNTKDAFSGEVAFKLYDTYGFPLDLTEDMLKEKNLS-LDTAKFEELMS 416 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQR RA+A G G + +L E++G +F+GY + Sbjct: 417 EQRKRAKAAWKGSGDDAVSGDFKALLEEFGENEFVGY----------------------E 454 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 T+ S ++ + + VE + GQK V D TPFYA++GGQ GD G + + ++ Sbjct: 455 TTHHASKVLSLLDENFIRVEALIKGQKGWVFLDVTPFYAQSGGQCGDAG-ELKEHAKVLD 513 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ---NRRQLSINHSATHLLHHALSTI 600 T KK G+ + VE E+ + +D + +R +++ +HSATHLLH L + Sbjct: 514 T---KKFFGLNLSRIAVE-----NELKVGDAVDAEVDISRNEITKHHSATHLLHAVLFDV 565 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG H+SQ GS + + LRFD +H K ++ EL+ IE+ VN I + +P T ++ E+A Sbjct: 566 LGEHISQAGSLVEANRLRFDFSHPKAVSEQELQEIEERVNVEIMRAIPAQTEVLPIEEAK 625 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA + G KY D VRVVS + D V CGG HV +T I I ES + AG+ Sbjct: 626 KSGAKSQFGEKYGDEVRVVS--FADASVE---FCGGVHVENTANIGSFIITKESGVSAGV 680 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+ G A + Q + LK +QG V + L L+ +L+ Sbjct: 681 RRIEAVCGNTAYKYFCEQ-------RALLKEAQGEV-----------KNLDLLAGIHRLK 722 Query: 781 LNVEDLSCH------------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 N+ +L K +N ++ ++ E+ S ++K +D L+ + ML Sbjct: 723 SNIAELKSELKEAQESAKVEIKTDAINGVTVVVDELPSGDIKEKIDELKNQNDKLCAMLF 782 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + +K VLI + A D + A +L GGGGGGRP AQ+GG + +K +A Sbjct: 783 QVKGDK---VLIAAGVKGCEA-KAGDWIKKIAPIL-GGGGGGRPDFAQAGGKDASKLPEA 837 Query: 889 IAGVASFL 896 F+ Sbjct: 838 KEEAMKFI 845 >gi|329938948|ref|ZP_08288322.1| alanyl-tRNA synthetase [Streptomyces griseoaurantiacus M045] gi|329301833|gb|EGG45726.1| alanyl-tRNA synthetase [Streptomyces griseoaurantiacus M045] Length = 890 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 357/923 (38%), Positives = 523/923 (56%), Gaps = 80/923 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + T+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE A +LAW+LLT D Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAAKLAWELLTTPQDKGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ +L+ITVY+ED+EA ++W+ I G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LEAEKLWITVYEEDDEAERIWRDIVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERF----ILPKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ +E F LP +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKEDFEILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ID +I + ++TG+ Y ++ V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNLYEIDTSMAVIGKATELTGVAYGDAHDSDVSLRVVTDHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE+ Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVETVIATMGQQYPELVTDRERIEKVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ RF KTL+ G +LD ++ +L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEARFLKTLNAGTNVLDTAVTETKAAGSTVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A +L +G + + + + GAT FIGY Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADALAKKTGHADLGAYREIADSAGATDFIGY-------- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T G S++V I+ G A G +VE+V D+TPFYAE GGQ+ Sbjct: 469 --------------TETEGESTVV-GILVDGLSSPAATEGDEVEIVLDRTPFYAEGGGQI 513 Query: 529 GDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG D G ++I D QK G++VH +V+ G + +ID + R+ ++ H Sbjct: 514 GDTGRIRTDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGARAQASIDDRRRKAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + +A + +E +N+++A++L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQKINEVLARDL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A S L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYSFLAREHTVVHQLTELVK-------GRPEELPEKV 741 Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKSV 812 ++++ A++ LQ + K DV ++ + +V + +L+ + Sbjct: 742 AGMLARLKDAEKEIEKFRAEKVLQAAGGLAASAK--DVRGLALVTGQVPDGTSADDLRKL 799 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869 + ++ +IQ G +V + L V+ + R A DL R +AK L GGGGG Sbjct: 800 VLDVRGRIQGGRAAVVALFAVNNGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGG 858 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+P +AQ GG N +A+ V Sbjct: 859 GKPDVAQGGGQNPAAVGEAVDAV 881 >gi|312110118|ref|YP_003988434.1| alanyl-tRNA synthetase [Geobacillus sp. Y4.1MC1] gi|311215219|gb|ADP73823.1| alanyl-tRNA synthetase [Geobacillus sp. Y4.1MC1] Length = 877 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 357/915 (39%), Positives = 526/915 (57%), Gaps = 68/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SLIP +DP+L++ NSG+ K F G+ P + V Sbjct: 7 AQVRKMFLDFFKEKGHAIEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDNPRICNV 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT E + Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +T++ ED+EAF++W K GL ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ERLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEE 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E +RY+E+WNLVF QF LPK +IDTGMGLERM ++L Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N++ DLF +I+A+E+++G +Y + V +VI DH+R+ +F I DG LP+NE Sbjct: 239 QGTPTNFETDLFMPIIRATERISGEQYGADAEKDVAFKVIADHIRAVTFAIGDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ +A+ L P M L+P + MG YPE+ + I++ +++E+ Sbjct: 299 GRGYVLRRLLRRAVRFAKQLHIERPFMYELVPVVGEIMGDFYPEVKEKAAFIQKVIKTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA- 411 ERF +TL GL +L V+ G D +++G+ F+LYDT+G P+++ ++ G+ Sbjct: 359 ERFHETLHEGLAILASVIEKEKERGSD-VISGEDVFRLYDTYGFPVELTEEYAQEEGMKV 417 Query: 412 ---GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G + Q + +R S+ + G I ++F+GYD L Sbjct: 418 DHEGFEREMERQRERARAARQDVDSMQVQGGVLGDIKVE-------SRFVGYDELHAQ-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S V IV+ G + +E G++ +++ D TPFYAE+GGQ+ Sbjct: 469 ---------------------SKVAVIVKDGNLADEVSEGEEAQIILDVTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + R + DVQK G +HH IVE+G L+ + + ID R + NH+ Sbjct: 508 ADQGWLENETARAFVKDVQKAPNGQHLHHIIVEKGTLKKGETYMARIDEAKRASIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD +H + EL+ IE VN+ I +++P Sbjct: 568 ATHLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V +A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 628 VDIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ +A LK S + R++ + E R Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMNEQIALLQEVAQKLKTSPKEITHRIDALMNEIR 742 Query: 769 KLQLIHAKRKLQL-NVEDLS-CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823 +LQ + +L N+E S +K+ VN + + S+V D L++++D L++K+ S Sbjct: 743 QLQRENESLAARLGNMEAASLVNKVKQVNGIPVLASKVNAADMNHLRTMVDELKQKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + E K S++ +T+DL+++ ++A L + A V GGGGGGR MAQ+GG + Sbjct: 803 VIVLAAVHGE-KVSLIAGITDDLVEKGYHAGKLIKEVA-VRCGGGGGGRADMAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 K +A+ V +++K Sbjct: 861 GKVGEALQYVETWIK 875 >gi|294792102|ref|ZP_06757250.1| alanine--tRNA ligase [Veillonella sp. 6_1_27] gi|294457332|gb|EFG25694.1| alanine--tRNA ligase [Veillonella sp. 6_1_27] Length = 871 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 349/908 (38%), Positives = 512/908 (56%), Gaps = 59/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P +TT Sbjct: 4 NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD+ R Sbjct: 64 QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176 Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 C P PG + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL +I+A+ + G+KY + N V+ +VI DH R+ + LI+DG+LP+NEGRG Sbjct: 235 KTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ERF Sbjct: 295 YVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERF 354 Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A++EQR RAR +KE A + D+ F+K++ V Sbjct: 414 GFEAAMKEQRERAREA--------------RVKE---AAKVATPDI----TFLKDEELVE 452 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 D SS++ + + E ++ A G ++ V+ TPF+AE GGQLGDTG +G Sbjct: 453 ------DEAETASSVL-MLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH A Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAA 565 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 566 LKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SE+ I Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGI 680 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEAITG+ A ++ +AS LK + R+ ++ E ++ +L Sbjct: 681 GSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEDRLHQVLAEAKETAKELEQ 740 Query: 775 AKRKLQ-LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830 ++++ D+ K I DV F++ + EL+ + D L K SG++++ Sbjct: 741 IRKEVSAAGAADIVAGKVVIGDVEFVAAAVKASSIDELRDLADLGLDKLNGSGVVLVGAA 800 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + + V++D++ + A ++ + +A+V GG GGGRP MAQ+GG K +A+ Sbjct: 801 MGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMEAL 859 Query: 890 AGVASFLK 897 LK Sbjct: 860 KAGGEALK 867 >gi|332176358|gb|AEE12048.1| alanyl-tRNA synthetase [Porphyromonas asaccharolytica DSM 20707] Length = 872 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 354/926 (38%), Positives = 509/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR FL+FF+++GH ++PS+ ++ +DPTLMFTN+GM FK+I G ++P Y+ Sbjct: 1 MMTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFK AI+ AW LT+ L Sbjct: 61 AADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAIKYAWTFLTERLQL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+TV+ D+EA W + + + D+II + DNFW M +TGPCGPC Sbjct: 121 PKDRLYVTVFGGSPEEGLSRDDEAASYWLQYT--TEDRIIDGSRKDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 SEI D Q C G +++ IEIWNLVFMQ++++ LP ID Sbjct: 179 SEIHIDLRSEEERQAVC---GRDLVNKDHPLVIEIWNLVFMQYDRKVDGHLEPLPHKVID 235 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSS 283 TGMG ER+ +Q K +NYD DLF LI+A E ++G +Y N V+ RV+ DH+R+ + Sbjct: 236 TGMGFERLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIA 295 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 F IADG LP+N GYV+RRI+RRA+ YA L EP++ LLP L MG AYPE++ Sbjct: 296 FAIADGQLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGEAYPEIVA 355 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401 + LI ++ E+E F +TL +GL LL+ + L +D ++L+G AF LYDT+G PLD+ Sbjct: 356 QRELIASVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLT 415 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 + IL RG+ +D ++F++ ++EQ+SRAR + W L E+ + F+GY+ Sbjct: 416 ELILSERGMT-LDQVAFDKLMQEQKSRARQAAA-----IDAADWEVLDEETTESTFVGYE 469 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L+ + RKV +K +VV +TPFY Sbjct: 470 TLQIETHILRYRKVADKK----------------------------RSYYQVVLAETPFY 501 Query: 522 AEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AE GGQ+GD G I DG I D K+ + VH I+ + + + + R Sbjct: 502 AEMGGQIGDKGVLIAQDGTEYPIIDT-KRENNLPVH--ILSTLPANPKQPFIARVGDELR 558 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 NH+ATHL+HHAL +LG+HV Q GS ++ D LRFD +H K +T E+ +E VN Sbjct: 559 HLTEANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVN 618 Query: 641 DIIAQNLPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 I + P R R IA GA AL G KY D VRV ++Y D S LCGG Sbjct: 619 AEIRADRP---RDEQRNVPIAKAKEMGAMALFGEKYGDEVRV--IKYGD----SVELCGG 669 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV+STG+I I+SE SI AGIRRIEA+TG +A ++ +E+L+ L + Sbjct: 670 THVASTGQIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPL 729 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKS 811 I E + + I K Q E ++ +AD + + + S K Sbjct: 730 KALDRLIAEGAEQRKAIEQYTKAQ--AEQIALQALADQTKRGETTIVTVNKPMSSDVAKD 787 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870 V +++++Q + L+G ++E K ++ ++++ DL+D+ NA L + A ++ GGGGG Sbjct: 788 VAGTIRERLQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNASKLIKEVASLI-KGGGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +PH A +GG N AI + S + Sbjct: 847 QPHFATAGGRNPEGLQAAIDHIVSLI 872 >gi|256419492|ref|YP_003120145.1| alanyl-tRNA synthetase [Chitinophaga pinensis DSM 2588] gi|256034400|gb|ACU57944.1| alanyl-tRNA synthetase [Chitinophaga pinensis DSM 2588] Length = 871 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 345/926 (37%), Positives = 517/926 (55%), Gaps = 96/926 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF GH ++PS+ ++ NDPTL+FTN+GM FK+ F G P ++ V QK Sbjct: 6 IRQQFLDFFASKGHHIMPSAPIVVKNDPTLLFTNAGMNQFKDYFLGNRAPAWKRVADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI +W+LLT+ + L + RLY Sbjct: 66 CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIDWSWELLTEVYKLPKDRLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +TV+ ++D+EAF+ WKK + D+I+ DNFW M +TGPCGPCSEI D Sbjct: 126 VTVFEGDAKENLEKDQEAFEFWKK--HVPEDRILMGNKKDNFWEMGDTGPCGPCSEIHVD 183 Query: 179 QGECIP-------GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 C P G + + + IEIWN VFMQF + + LP +DTGMG E Sbjct: 184 ---CRPDSERALVDGKTLVNADDPQVIEIWNNVFMQFNRLKDRSLESLPAKHVDTGMGFE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIAD 288 R+ V+Q KT+NYD D+F I +E++TG+KY + V RVI DH+R+ SF IAD Sbjct: 241 RLVRVIQGKTSNYDTDVFSGTIGHTEKLTGLKYGCTDSKPDVAFRVIADHIRAISFAIAD 300 Query: 289 GILPANEGRGYVLRRIMRRAM-CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 G LP+N G GYV+RRI+RRA+ Y L + +PL+ L+P L + + +PEL+Q + Sbjct: 301 GQLPSNTGAGYVIRRILRRAVRYYFSFLNWKKPLLQDLVPVLAQQFANVFPELLQQVDFV 360 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 ++ + E+ F +TLD G+ ++ + K++ ++G AF+LYDT+G P D+ I Sbjct: 361 QKVVFEEENNFLRTLDSGIRRIEDFMG-AAKEKSVDGKTAFELYDTYGFPYDLTSLIASE 419 Query: 408 RGLAGIDIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G + D F+ A++EQ+ R+RA + L +G W L E + F+GY+L Sbjct: 420 NGFSA-DKEGFDAAMKEQKDRSRAATELDMGD------WTVLNEN-AESVFVGYELSETE 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + RK+ +A ++ ++V QTPFYAE+GG Sbjct: 472 TSVAKYRKI----------------------------KAKGKEQYQLVLSQTPFYAESGG 503 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GDTG +Q+TD KK + VH V++ + I+ NR ++N Sbjct: 504 QVGDTGILTFGAETIQVTDT-KKENNLIVH--FVDKLPANITTTAKAVINKNNRLSTTMN 560 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL +LG+HV+Q GS + P+ LRFD +H ++ EL IE+ VN+ I N Sbjct: 561 HSATHLLHAALRQVLGTHVAQKGSLVNPEYLRFDFSHFAKVSDEELAQIEEIVNEKIRAN 620 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +PVV + + +E+A+ GA AL G KY D VRVV + D G +S LCGGTHV STGE+ Sbjct: 621 IPVVIKELPKEEALKLGAMALFGEKYGDVVRVVVM---DPG-YSVELCGGTHVGSTGELG 676 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + SE ++ AG+RRIEA+TG+ A + + Q ++LK + + LK + ++V V+ Sbjct: 677 IFKFTSEGAVAAGVRRIEAVTGRNALAFVNAQLQQLKDIKTALK-NPKDIVAVVD----- 730 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD--------------VNFMSHIISEVDSKELKSV 812 LI+ K L+ VE L K+ +NF+ I+ +++ LK + Sbjct: 731 ----NLINDKAALEKRVEALELEKVRQLSAGLQAEVENVHGINFLGKIVDVNNAEALKQL 786 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGG 870 L+ +I + + +L + KA+V ++++++L+ A + + + GGGGG Sbjct: 787 CFTLKTQIDNHVFILAA-NIGGKANVALMISDNLVAEKGLEAPKIIKEKIAPIIKGGGGG 845 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + A +GG + DQ I V + L Sbjct: 846 QKSFATAGGQEAGQLDQVITQVKAML 871 >gi|295399321|ref|ZP_06809303.1| alanyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|294978787|gb|EFG54383.1| alanyl-tRNA synthetase [Geobacillus thermoglucosidasius C56-YS93] Length = 877 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 357/915 (39%), Positives = 525/915 (57%), Gaps = 68/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SLIP +DP+L++ NSG+ K F G+ P + V Sbjct: 7 AQVRKMFLDFFKEKGHAIEPSASLIPVDDPSLLWINSGVATLKKYFDGRVVPDNPRICNV 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT E + Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLTSEKWIGFEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL +T++ ED+EAF++W K GL ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ERLSVTIHPEDDEAFEIWHKEIGLPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEE 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P E E +RY+E+WNLVF QF LPK +IDTGMGLERM ++L Sbjct: 180 F-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMCSIL 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N++ DLF +I+A+E+++G +Y + V +VI DH+R+ +F I DG LP+NE Sbjct: 239 QGTPTNFETDLFMPIIRATERISGEQYGADAEKDVAFKVIADHIRAVTFAIGDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ +A+ L P M L+P + MG YPE+ + I++ +++E+ Sbjct: 299 GRGYVLRRLLRRAVRFAKQLHIERPFMYELVPVVGEIMGDFYPEVKEKAAFIQKVIKTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA- 411 ERF +TL GL +L V+ G D +++G+ F+LYDT+G P+++ ++ G+ Sbjct: 359 ERFHETLHEGLAILASVIEKEKERGSD-VISGEDVFRLYDTYGFPVELTEEYAQEEGMKV 417 Query: 412 ---GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G + Q + +R S+ + G I + F+GYD L Sbjct: 418 DHEGFEREMERQRERARAARQDVDSMQVQGGVLGDIKVE-------SHFVGYDELHAQ-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S V IV+ G + +E G++ +++ D TPFYAE+GGQ+ Sbjct: 469 ---------------------SKVAVIVKDGNLADEVSEGEEAQIILDVTPFYAESGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + R + DVQK G +HH IVE+G L+ + + ID R + NH+ Sbjct: 508 ADQGWLENETARAFVKDVQKAPNGQHLHHIIVEKGTLKKGETYMARIDEAKRASIVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + PD LRFD +H + EL+ IE VN+ I +++P Sbjct: 568 ATHLLHQALKDVLGPHVNQAGSLVAPDRLRFDFSHFGQVKPEELERIEAIVNEKIWRSIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V +A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 628 VDIFYKPLAEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSAIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 IVSES I AG RRIEA+TG+ A + Q L+ +A LK S + R++ + E R Sbjct: 683 KIVSESGIGAGTRRIEAVTGEAAYRFMNEQIALLQEVAQKLKTSPKEITHRIDALMNEIR 742 Query: 769 KLQLIHAKRKLQL-NVEDLS-CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSG 823 +LQ + +L N+E S +K+ VN + + S+V D L++++D L++K+ S Sbjct: 743 QLQRENESLAARLGNMEAASLVNKVKQVNGIPVLASKVNAADMNHLRTMVDELKQKLGSA 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L + E K S++ +T+DL+++ ++A L + A V GGGGGGR MAQ+GG + Sbjct: 803 VIVLAAVHGE-KVSLIAGITDDLVEKGYHAGKLIKEVA-VRCGGGGGGRADMAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 K +A+ V +++K Sbjct: 861 GKVGEALQYVETWIK 875 >gi|328554359|gb|AEB24851.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens TA208] gi|328912763|gb|AEB64359.1| alanyl-tRNA synthetase [Bacillus amyloliquefaciens LL3] Length = 878 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 350/910 (38%), Positives = 534/910 (58%), Gaps = 58/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AEVRQMFLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVVPENPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT E D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSEKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +TV+ EDEEA+ LW + G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 ELLSVTVHPEDEEAYTLWAEKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEK 179 Query: 183 IPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G P SE E +RY+E+WNLVF +F LPK +IDTGMGLERM +V+ Sbjct: 180 Y-GNDPSDSELYPGGENDRYLEVWNLVFSEFNHNPDGTYTPLPKKNIDTGMGLERMVSVI 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANE 295 Q N+D DLF +I+A+E+++G Y + + + +VI DH+R+ +F ++DG LP+NE Sbjct: 239 QNVPTNFDTDLFMPIIEAAERISGDAYGKDAVKDTAFKVIADHIRTVAFAVSDGALPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ YA+ +G + P M L+P + M + YPE+ + + I + +++E+ Sbjct: 299 GRGYVLRRLLRRAVRYAKTIGISRPFMYELVPTVAGIMDAFYPEVKEKQEFIAKVIKTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +TL+ GL +L V+ ++ I++G FKLYDT+G P+++ ++ + + Sbjct: 359 ERFHETLNEGLAILSDVIKKEKENGSGIISGKDVFKLYDTYGFPVELTEEYAEDEQMK-V 417 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F +E+QR RAR +GS + +L++ + F+GY K + Sbjct: 418 DHKGFEAEMEKQRERARNARQDVGSMQVQG--GALRDITAESTFVGYSA------TKAEA 469 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 KV+ ++ G+++ EA G V+++ D+TPFYAE+GGQ+GD G Sbjct: 470 KVI-----------------ELLHDGQLISEAHEGDTVQILLDETPFYAESGGQIGDRGV 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + I DV+K G VH V+ G ++ S+ ++ Q R + NH+ATHLL Sbjct: 513 LRSAQAVVTIKDVKKAPNGQHVHEGTVDSGTIQKGASVTAEVEDQMRSGVVKNHTATHLL 572 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV+Q GS +T + LRFD +H +T EL+ IE VN+ I ++PV + Sbjct: 573 HQALKDVLGTHVNQAGSLVTENRLRFDFSHFGQVTKEELERIEGIVNEKIWASIPVAIDL 632 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 +A GA AL G KY D VRVV V G +S LCGG HV++T EI L IVSE Sbjct: 633 KPINEAKEMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVTNTAEIGLFKIVSE 687 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG RRIEA+TG+ A + Q L+ A LK + +V R++ + E ++ Q Sbjct: 688 SGIGAGTRRIEAVTGKGAYQEMNSQLSLLQHAADELKTNVKDVPKRIQSLQAELKEAQRE 747 Query: 774 HAKRKLQL-NVEDLSC-HKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828 + +L NVE + K+ D+ + + +V++K+ L++++D L+ K+ S +I+L Sbjct: 748 NESLLSKLGNVEAGAILSKVKDIGGVKVLAEKVNAKDMNHLRTMVDDLKAKLGSAVIIL- 806 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G + K ++ VT+DL+++ +A + + +A+V GGGGGGRP MAQ+GG K ++ Sbjct: 807 GAVQNDKVNLSAGVTKDLIEKGLHAGKMVKQAAEVC-GGGGGGRPDMAQAGGKQPEKLEE 865 Query: 888 AIAGVASFLK 897 A+ ++K Sbjct: 866 ALTSAEDWIK 875 >gi|224538063|ref|ZP_03678602.1| hypothetical protein BACCELL_02953 [Bacteroides cellulosilyticus DSM 14838] gi|224520311|gb|EEF89416.1| hypothetical protein BACCELL_02953 [Bacteroides cellulosilyticus DSM 14838] Length = 872 Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust. Identities = 349/927 (37%), Positives = 518/927 (55%), Gaps = 96/927 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRNSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVDVLKI 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKNLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PGS +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDSRPEEEKAQIPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ+KT+NYD D+F+ +++A +TG KY + + + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQDKTSNYDTDVFQPILKAIGNMTGKKYGEDEKSDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRQAFMYKLLPVLIENMGEAYPELEAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LI + ++ E++ F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LISKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ DI F+ +++Q+ RAR ++ + +G W +LKE G T+F+GY Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAIETGD----WITLKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + + Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPAHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695 I N+P+ R + EDA GA AL G KY D VRV+ SVE+ CG Sbjct: 617 AKIRANIPLKEYRNIPIEDAKELGAIALFGEKYGDHVRVIQFGSSVEF----------CG 666 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-- 753 GTHV++TG I ++ IVSESS+ AG+RRIEA TG R + ++ LK L + + Sbjct: 667 GTHVAATGNIGMIKIVSESSVAAGVRRIEAYTGARVEELMDTIEDTLKDLKALFNNAPDL 726 Query: 754 -GNVVGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 G + +EE E++ + + K +L N++++ K+ I + + + Sbjct: 727 AGTIRKYIEENAGLKKQMEDFMREKEAQIKERLLKNMQEIHGIKVI------KICAPIPA 780 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865 + +K++ L+ +I + + G E K + ++++++L+ A +L + +AK++ Sbjct: 781 ESIKNIAFQLRGEITENLCFVAGTINEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+PH A +GG N + + AI V Sbjct: 840 GGGGGQPHFATAGGKNIDGLNAAIEKV 866 >gi|268680286|ref|YP_003304717.1| alanyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946] gi|268618317|gb|ACZ12682.1| alanyl-tRNA synthetase [Sulfurospirillum deleyianum DSM 6946] Length = 846 Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust. Identities = 337/833 (40%), Positives = 493/833 (59%), Gaps = 55/833 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 +R FL+FF++ GH+++ SS L+P +D TL+FTN+GMVPFK++FTG+ +P TT Q Sbjct: 3 VRAEFLKFFEQKGHKVIESSPLVP-DDATLLFTNAGMVPFKSVFTGEVPRPNPPRATTCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ L + +L Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAISHAWEFVTEVLKLPKEKL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---C 182 ++TV++ D+EA ++W I + A +I+R DNFW M +TGPCGPCSEIF DQG Sbjct: 122 WVTVHESDDEAEEIW--IKHIDASRIMRFGDKDNFWQMGDTGPCGPCSEIFIDQGAENFN 179 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 P G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ V + + Sbjct: 180 TPEDYMGG--DGDRFLEIWNLVFMQYERDKEGNLHPLPKPSIDTGMGLERVTAVQEGVFS 237 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 NYD LF L ++ G Y ++RVI DH+RS +FL+A G+ GRGYVLR Sbjct: 238 NYDSSLFIPLTSKVAELCGKAYAYKTGASYRVIADHIRSVAFLVAQGVSFGRVGRGYVLR 297 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 RI+RRA+ + LLG EP M LL LC MG YP L+ K + E +++E+E F T+ Sbjct: 298 RILRRAVRHGYLLGLREPFMYKLLDTLCDLMGKQYPYLVAKKEGVAEQIKNEEESFFTTI 357 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 GL L + L + + +G+VAFKLYDT+G PLD+ D+L +GL+ ++ F + Sbjct: 358 ASGLELFEKELPN--TKAMFSGEVAFKLYDTYGFPLDLTADMLREKGLS-VNEAEFEALM 414 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EQ++R++A G G T + L EK+G F+GY QK Sbjct: 415 AEQKARSKASWKGSGDKATHGEFKPLLEKFGLNTFVGY----------------TQK--- 455 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 ++ V +++ ++ E ++E +G V+F++TPFYA +GGQ GD G G G + Sbjct: 456 EVKTKVLALLDENFKEVESLDE--NGW---VMFEKTPFYAMSGGQCGDEGSIEGYG---K 507 Query: 543 ITDVQKKAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + D +K + ++ ++VE L + L +D +R ++ +HSATHLLH AL TIL Sbjct: 508 VLDTKKFFD---LNLSLVELEKPLHVNDEVALVVDL-SRLEIEKHHSATHLLHSALRTIL 563 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HV+Q GS + + LRFD +H K ++ EL +IE VN IIA + T++MN E+A Sbjct: 564 GDHVAQAGSLVEKERLRFDFSHPKALSHEELSNIEAFVNRIIASGVAGETKLMNIEEAKK 623 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 SGA AL G KY VRVVS G S LCGGTHV + I +I+ ES + AG+R Sbjct: 624 SGAMALFGEKYGSEVRVVSF-----GDASIELCGGTHVENVANIGSFFILKESGVSAGVR 678 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEAI G A ++ +++++ +K + ++G + + EE + L+ Q Sbjct: 679 RIEAICGGAALAYAQALRTEMEAIKESVKHKE-PLIG-INRLKEEIKSLKTEVESLNAQA 736 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 S H VN + I+ + + ++K+ +D L+ + +S ++L+ + ++K Sbjct: 737 GKAVESLH----VNGVELIVDVLGAGDIKARIDDLKNEKESVAVLLLQVKEDK 785 >gi|1565288|emb|CAA69650.1| alanyl-tRNA synthatase [Thermus thermophilus] Length = 882 Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust. Identities = 345/854 (40%), Positives = 502/854 (58%), Gaps = 59/854 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 + IR FL FF+ GH LPS SLIP +DP+L+FT++GM P K F G KP+ Sbjct: 2 RTAEIREKFLSFFEGKGHLRLPSFSLIPEDDPSLLFTSAGMAPLKPYFLGA-KPIFGGRE 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ VTT Q+C+R G D++NVGRT+RH+T+FEMLGNFSFG YFK+ AI AW+ LT+ Sbjct: 61 WRRVTTCQECLRVG----DIENVGRTSRHNTYFEMLGNFSFGDYFKKEAILWAWEFLTEH 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPC 172 LD RL++TV+++D+EA+++W+ + G+ ++I R ++N+W + GP GPC Sbjct: 117 LKLDPGRLWVTVFEDDDEAYEIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176 Query: 173 SEIFFDQGEC--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----ILPKMSIDT 226 SE F+D+G P ++ G+R++EIWNLVF Q+++Q LP+ +IDT Sbjct: 177 SETFYDRGPAYGTPDETGPNTGSGDRFVEIWNLVFTQYDRQAPIPGPGILKPLPQKNIDT 236 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 GMGL R+A +LQ+ + Y D F +IQ +++G YEG V+HRVI DH+R+ + Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFFPIIQEVARMSGRPYEGKTSVSHRVIADHVRAVVAAL 296 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 +DG +N GRGYV+RR++RRA+ + LLG ++P + L P + +G YPE+ + Sbjct: 297 SDGATFSNTGRGYVIRRLLRRALRHGYLLGLSDPFLHRLAPLVAELLGDFYPEMRENLPA 356 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ +R E+ERF +TL+ GL LD +LS L E+L G AF+LYDT+G PLD+ +I Sbjct: 357 VEKQIRLEEERFLETLEGGLKRLDALLSGLKPGEVLPGKEAFRLYDTYGFPLDLTVEIAA 416 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLL 463 RG G+D F +A+EEQ+SR+RA ++ +K L+E Y GAT+F+GY+ L Sbjct: 417 ERGY-GVDTEGFQKAMEEQQSRSRA-AMAFEREIFKKGAQVLEELYAERGATEFLGYNAL 474 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + + +VL L G S++ EA G +V+VV D+TPFYAE Sbjct: 475 ------EAEAEVLA------LLAGDQSLL-----------EAGPGTEVQVVLDKTPFYAE 511 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G G R ++ +K GIF+H A VE G+LR + +D RR Sbjct: 512 GGGQIGDFGLLEWPGGRARVETTRKTERGIFLHKARVEEGVLRVGERVRAVVD-PRRRDT 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHLLH AL +LG HV Q GS + PD LRFD TH +P+ EL+ +E VN I Sbjct: 571 ERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKPEELERVELLVNRWI 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSST 702 + PV R M E+A GA AL G KY + VRVV VE G+ S LCGG HV T Sbjct: 631 MADFPVTWRYMPLEEARKEGAMALFGEKYGEVVRVVRVEGSPLEGLESKELCGGCHVRRT 690 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE- 761 GEI I SE ++ AG+RRIEA+TG+ A G +LK+LA L+V + + R+E Sbjct: 691 GEIGAFLIRSEEAVSAGVRRIEAVTGEEAIRFARGSLNRLKALAERLEVGEAALEERLEK 750 Query: 762 ---EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDA 815 E+ E+ R+++ + A R +Q + + + + ++E +D+K L+ D Sbjct: 751 LLAELKEKEREVESLKA-RLVQAALGGGGGASLEEKGGLRWTVAELPGLDAKALRQAADD 809 Query: 816 LQKKIQSGIIMLVG 829 L + ++L G Sbjct: 810 LVARGADVALVLSG 823 >gi|313887310|ref|ZP_07821001.1| alanine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I] gi|312923229|gb|EFR34047.1| alanine--tRNA ligase [Porphyromonas asaccharolytica PR426713P-I] Length = 871 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 353/920 (38%), Positives = 508/920 (55%), Gaps = 84/920 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+++GH ++PS+ ++ +DPTLMFTN+GM FK+I G ++P Y+ QK Sbjct: 6 IRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRRAADSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VGR HHT FEMLGN+SFG YFK AI+ AW LT+ L + RLY Sbjct: 66 CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAIKYAWTFLTERLQLPKDRLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +TV+ D+EA W + + + D+II + DNFW M +TGPCGPCSEI D Sbjct: 126 VTVFGGSPEEGLSRDDEAASYWLQYT--TEDRIIDGSRKDNFWEMGDTGPCGPCSEIHID 183 Query: 179 -------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 Q C G +++ IEIWNLVFMQ++++ LP IDTGMG E Sbjct: 184 LRSEEERQAVC---GRDLVNKDHPLVIEIWNLVFMQYDRKVDGHLEPLPHKVIDTGMGFE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289 R+ +Q K +NYD DLF LI+A E ++G +Y N V+ RV+ DH+R+ +F IADG Sbjct: 241 RLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAIADG 300 Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+N GYV+RRI+RRA+ YA L EP++ LLP L MG AYPE++ + LI Sbjct: 301 QLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGEAYPEIVAQRELIA 360 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCA 407 ++ E+E F +TL +GL LL+ + L +D ++L+G AF LYDT+G PLD+ + IL Sbjct: 361 SVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELILSE 420 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 RG+ +D ++F++ ++EQ+SRAR + W L E+ + F+GY+ L+ Sbjct: 421 RGMT-LDQVAFDKLMQEQKSRARQAAA-----IDAADWEVLDEETTESTFVGYETLQIET 474 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + RKV +K +VV +TPFYAE GGQ Sbjct: 475 HILRYRKVADKK----------------------------RSYYQVVLAETPFYAEMGGQ 506 Query: 528 LGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 +GD G I DG I D K+ + VH I+ + + + + R N Sbjct: 507 IGDKGVLIAQDGTEYPIIDT-KRENNLPVH--ILSTLPANPKQPFIARVGDELRHLTEAN 563 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHL+HHAL +LG+HV Q GS ++ D LRFD +H K +T E+ +E VN I + Sbjct: 564 HTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSHFKKVTPEEIAEVERLVNAEIRAD 623 Query: 647 LPVVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 P R R IA GA AL G KY D VRV ++Y D S LCGGTHV+ST Sbjct: 624 RP---RDEQRNVPIAKAKEMGAMALFGEKYGDEVRV--IKYGD----SVELCGGTHVAST 674 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I I+SE SI AGIRRIEA+TG +A ++ +E+L+ L + Sbjct: 675 GQIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNERLNNVPDPLKALDRL 734 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-----NFMSHIISEVDSKELKSVMDALQ 817 I E + + I K Q E ++ +AD + + + S K V ++ Sbjct: 735 IAEGAEQRKAIEQYTKAQ--AEQIALQALADQTKHGETTIVTVNKPMSSDVAKDVAGTIR 792 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +++Q + L+G ++E K ++ ++++ DL+D+ NA L + A ++ GGGGG+PH A Sbjct: 793 ERLQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNASKLIKEVASLI-KGGGGGQPHFAT 851 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG N AI + S + Sbjct: 852 AGGRNPEGLQAAIDHIVSLI 871 >gi|254993607|ref|ZP_05275797.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J2-064] Length = 826 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 347/876 (39%), Positives = 498/876 (56%), Gaps = 80/876 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L EK + F+GY+ Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGYN 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 T VS I+ ++Q +VEE +G + +V+F +TPFY Sbjct: 464 S----------------------TEQVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+ D G + + DVQK +H V+ G+L+T ++ L +D RR Sbjct: 501 AESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRR 560 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT EL +E+ VN+ Sbjct: 561 ETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNE 620 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + VV M +A GA AL G KY D VRVV V G +S LCGG HV + Sbjct: 621 KIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKYSIELCGGVHVRN 675 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS LK + +VE Sbjct: 676 TADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSHIISEVDSKELKS 811 ++ + R++ KR+ + + L+ AD V ++ ++ D +L+ Sbjct: 736 QLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQ 790 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847 +D + K GI++L G + K +++ V+E+ + Sbjct: 791 FVDNWKDKKIGGILVL-GAVQGDKVNLISAVSEEAI 825 >gi|303229350|ref|ZP_07316140.1| alanine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a] gi|302515886|gb|EFL57838.1| alanine--tRNA ligase [Veillonella atypica ACS-134-V-Col7a] Length = 872 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 347/909 (38%), Positives = 507/909 (55%), Gaps = 59/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P +TT Sbjct: 4 NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD+ R Sbjct: 64 QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKDAIHWAWEFLTEVIKLDKNR 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176 Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 C P PG + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQHC 234 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL +I+A+ + G+KY + N V+ +VI DH R+ + LI+DG+LP+NEGRG Sbjct: 235 KTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ERF Sbjct: 295 YVLRRILRRAVRHGRLLGIEGLFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERF 354 Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ A++EQR RAR +KE +K D L Sbjct: 414 GFDAAMKEQRERAREA--------------RVKED--------------AKVATPDITFL 445 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++ +S V + + E ++ AV G ++ V+ TPF+AE GGQLGDTG +G Sbjct: 446 KDEELVENEAETASSVLMLGKGSERLQTAVDGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH A Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTARRAAMARNHTATHLLHAA 565 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 566 LKRVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SES I Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSESGI 680 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEAITG+ A ++ +A LK V R+ ++ E ++ +L Sbjct: 681 GSGVRRIEAITGRAALDAAKHDRLTIERIAGELKTKPAQVEERLHQVLVEAKETAKELDQ 740 Query: 775 AKRKLQ-LNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830 ++++ D+ K I DV F++ + EL+ D L K SG++++ Sbjct: 741 IRKEVSAAGAADIVAGKVMIGDVAFVAASVKASSIDELRDFADMGLDKLDGSGVVLVGAA 800 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + + V++D++ + A ++ + +A+V GG GGGRP MAQ+GG K A+ Sbjct: 801 MGDDKVNFVCKVSKDVVGKGVKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMDAL 859 Query: 890 AGVASFLKK 898 +K+ Sbjct: 860 KAAGEAVKE 868 >gi|294501349|ref|YP_003565049.1| alanyl-tRNA synthetase [Bacillus megaterium QM B1551] gi|294351286|gb|ADE71615.1| alanyl-tRNA synthetase [Bacillus megaterium QM B1551] Length = 877 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 360/915 (39%), Positives = 525/915 (57%), Gaps = 68/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF++ GH++ PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AQVRQMYLDFFKEKGHDVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AIQ AW+ LT K D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIQWAWEFLTSDKWIGFDA 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +TV+ ED+EAFK+W + G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLSVTVHPEDKEAFKIWNEKMGVPKERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+EIWNLVF QF LPK +IDTGMGLERM +V Sbjct: 180 YGNDLNDPELYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMVSV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPAN 294 +Q+ N+D DLF +I+A+E ++G KY N+ + +VI DH+R+ +F + DG LP+N Sbjct: 238 IQDVQTNFDTDLFMPIIEATENISGAKYRTNDEQDTAFKVIADHIRTVTFAVGDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ L P M L+P + M YPE+ + I+ +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKKLNINRPFMYELVPVVGEIMVDFYPEVKEKTDFIQRVVKNE 357 Query: 355 DERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +ERF +TL+ GL +L V+ + + G+ F+LYDT+G P+++ ++ + Sbjct: 358 EERFHETLNDGLAILATVIKKEKAQNSDTVQGEDVFRLYDTYGFPVELTEEYAEDENMK- 416 Query: 413 IDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 ID F + +E QR RAR + S+ + G L E A++F+GYD Sbjct: 417 IDHAGFEREMEAQRERARAARQDSSSMQVQGGV-------LGEVTVASEFVGYD------ 463 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 N V ++V+AI+ GE+V+ A +G + +V+ TPFYAE+GGQ Sbjct: 464 -----------------KNEVETVVEAIIVDGELVDRAEAGTEAQVILSHTPFYAESGGQ 506 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G ++ DVQK G V V G L T+D +NR + NH Sbjct: 507 IADQGTIQSAAGTAEVKDVQKAPNGQNVQTVAVTNGELVKGEIYTATLDEENRSAIVKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL LG+HV+Q GS +T D LRFD +H +T EL+ IE VN+ I ++ Sbjct: 567 TATHLLHQALKDTLGTHVNQAGSLVTADRLRFDFSHFGQVTQEELEKIEQIVNEKIWDSI 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V ++A A GA AL G KY D VRVV V G +S LCGG HV +T I L Sbjct: 627 SVQIENKAIDEAKAMGAMALFGEKYGDIVRVVQV-----GDYSLELCGGCHVPNTSVIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSES I AG RRIEA+TG+ A + Q LK A+ +K + ++VGRVE + EE Sbjct: 682 FKIVSESGIGAGTRRIEAVTGKAAYQLMNDQVGLLKEAAAKVKSNPRDLVGRVEGLLEEI 741 Query: 768 RKLQLIHAKRKLQL-NVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 R LQ + +L N+E + I VN ++ ++ D L++++D L++K++S Sbjct: 742 RNLQRENDSLSTKLGNIEAGNLVDRVQNINGVNVLAAKVNATDMNNLRAMVDDLKQKLES 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L E K +++ VT+DL+ + + + GGGGGGRP MAQ+GG + Sbjct: 802 AVIVLASPQGE-KVNIIAGVTKDLIAKGHHAGKLVKEVATICGGGGGGRPDMAQAGGKDA 860 Query: 883 NKADQAIAGVASFLK 897 ++ ++A+ V ++K Sbjct: 861 SQIEKALGTVEEWVK 875 >gi|229815209|ref|ZP_04445545.1| hypothetical protein COLINT_02255 [Collinsella intestinalis DSM 13280] gi|229809219|gb|EEP44985.1| hypothetical protein COLINT_02255 [Collinsella intestinalis DSM 13280] Length = 884 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 346/893 (38%), Positives = 517/893 (57%), Gaps = 48/893 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR+ +L FF++ G++L SSSL+P +DP+L+ N+GM FK + G++ Sbjct: 9 STAEIRSAYLNFFEERGNKLYASSSLVP-DDPSLLLANAGMNQFKEYYQGKKVMKEIGAC 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKCVR ND+D +G RH +FFEMLGNF+FGG KE+A A++L+T+ F L + Sbjct: 68 SCQKCVRT----NDIDIIGSDGRHASFFEMLGNFAFGGVTKEQACTWAYELITEVFKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+ TV+ +D+E +W+ + G+ D I R+ +DNFW+ TGPCGPCSEI+FD GE Sbjct: 124 ERLHFTVFTDDDETHDVWRAL-GVPEDHITRLGEDDNFWAAGPTGPCGPCSEIYFDLGEE 182 Query: 183 IPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + G P + + +R++E WNLVF QF++Q LP ++DTGMGLERMA ++Q K Sbjct: 183 VGCGCPDCAPGCDCDRFLEFWNLVFTQFDRQEDGSMPELPHRNLDTGMGLERMAAIMQHK 242 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPANEG 296 ++ +D D+ + LI+ E+++G Y N R+I DH RS FLI+DG+LP NEG Sbjct: 243 SSFFDGDVMQSLIKLGEEISGKTYVDNEYTGASRSLRIIADHARSVDFLISDGVLPGNEG 302 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA+ + RLLG + + + A+ MG AYP L++ L++ + +E+E Sbjct: 303 RGYVLRRLLRRAVFHGRLLGIEDAFLGRFIDAVNDVMGDAYPNLVENAGLVKGIVNAEEE 362 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 RF TL+ G V LD L LG+ E L+G AF L+DT G P+D+ +I + G A +DI Sbjct: 363 RFSTTLNNGRVYLDEQLGALGEGEQLSGKAAFMLHDTFGFPIDLTVEIAESAGHA-VDID 421 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ + EQ++RARA + G G+ +W L ++ AT+F GY Sbjct: 422 GFDAEMAEQKARARAAAKGDAWGSFNDVWTELADQLPATEFAGY---------------- 465 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 ++ I+ + V AIV GE V A + + VV D+TP YAE GGQLGD G Sbjct: 466 -EEESIE-----GAHVLAIVVNGERVASAENAAEASVVLDRTPLYAEMGGQLGDHGLIDT 519 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + +++ K G++VH + G L ++ D R L+ NH+ATHLL A Sbjct: 520 ADAQFFVSNTVSKG-GLYVHEGKL-IGKLSEGDTVFAGYDLNRRGLLARNHTATHLLDAA 577 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS ++P+ LRFD TH + +TS +++++ED VN+ I PVVTR+M Sbjct: 578 LKEVLGDHVNQAGSLVSPEALRFDFTHFEAMTSEQIRAVEDLVNEQILAAKPVVTRVMGI 637 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A ASGA AL G KY+D VRVVS+ ED S LCGGTH ++T E+ L IVSESS Sbjct: 638 EEAKASGAVALFGEKYSDTVRVVSIGAED-EPFSRELCGGTHAANTAELGLFKIVSESST 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 + +RRIEA+T A ++L + +S AS LK V R+ + E R+ K Sbjct: 697 GSNVRRIEAVTSTGAIAYLEQRAALAESAASQLKCRIEEVPARISSLQAELRESNQ-KLK 755 Query: 777 RKLQLNVEDLSCHKIADVNFMSH---IISE---VDSKELKSVMDALQKKIQSGIIMLVGI 830 + L D I + M +++E +++ +L++V D +++K+ ++ Sbjct: 756 KALTGGGSDAISSAIENAQDMGGYKLVVAELAGLEASDLRNVWDTIRQKVSGACACVLAT 815 Query: 831 SKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 EK LI D F+A ++ + A ++ G GGG+P MAQ+GG + Sbjct: 816 VTEKGTPALIAAATDDAASAGFHAGNVIKQIAPLV-DGRGGGKPTMAQAGGKD 867 >gi|10803041|gb|AAG23689.1|AF297520_1 alanyl-tRNA synthase [Haemophilus ducreyi] Length = 783 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 330/814 (40%), Positives = 484/814 (59%), Gaps = 56/814 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 M+GNFSFG YFK AIQ AW+ LT E L + +LY+TVY+ D+EA+ +W K G+ ++ Sbjct: 1 MMGNFSFGDYFKHDAIQFAWEFLTSEKWLHLPKEKLYVTVYETDDEAYDIWHKTVGVPSE 60 Query: 150 KIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIW 201 IIRI N DNFW+M +TGPCGPC+EIF+D GE GGLPG++EE G+RYIE+W Sbjct: 61 HIIRIGDNKGVPYASDNFWAMGDTGPCGPCTEIFYDHGESFWGGLPGTAEEDGDRYIEVW 120 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N+VFMQF +Q LPK S+DTGMGLERM V+Q +NY+ D+F+ LI+ E T Sbjct: 121 NIVFMQFNRQADGTLAKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIK--EVATL 178 Query: 262 MKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 + + + RVI DH+R+ S+LI DG++P+NEGRGYVLRRI+RRA+ + LLG E Sbjct: 179 LHVADLDNKSLRVIADHIRACSYLIVDGVIPSNEGRGYVLRRIIRRAVRHGNLLGAKEAF 238 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 L+P L MG A L + I++TL++E+E+F +TL+RGL LL+ L+ + +++ Sbjct: 239 FYKLVPTLAKVMGQAGEILTDKQSYIQKTLKTEEEQFARTLERGLALLEEALTKV-ENQT 297 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L+G+VAFKLYDT+G PLD+ D+ R + ID SF + QR RA++ S G+ Sbjct: 298 LSGEVAFKLYDTYGFPLDLTADVCRERDIV-IDEASFEIEMTAQRERAKSSS-NFGAD-- 353 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + S+ + T FIGYD + KV+ A+ G+ Sbjct: 354 ---YNSVIKVEAETAFIGYDCFNA------EAKVI-----------------ALFSNGQA 387 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V++ SG+ VV D+TPFYAE GGQ+GD+G + + D QK + +F H V Sbjct: 388 VDKVQSGESAVVVLDKTPFYAEMGGQVGDSGLITTAFCQFAVADTQKYGQ-VFGHIGQVV 446 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L + +D R+ ++ NHSATHLLH AL +LG HV Q GS ++ + LRFD Sbjct: 447 SGSLAIGDIISAQVDIARRQAITANHSATHLLHSALRQVLGEHVVQKGSLVSENVLRFDF 506 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 + S+ ++ A+L+ IE VN I QNL V M+ E A G AL G KY D VRVV + Sbjct: 507 SQSQAVSKAQLEEIERIVNRQIRQNLAVTIETMDIETAKEKGTVALFGEKYGDVVRVVGM 566 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 S LCGGTHV TGEI L ++SES++ AGIRR+EA+T + A + L Q + Sbjct: 567 TD-----FSIELCGGTHVKHTGEIGLFKLISESAVAAGIRRVEALTAENAINWLHNQQKI 621 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799 + A LK ++V ++ ++ ++ ++ +L H K KL ++ +N ++ Sbjct: 622 IHQSAELLKTDSLSLVDKIYQLQDKIKRNEKELQHFKDKLAAQAGAELAKQVVQINGINV 681 Query: 800 IISE---VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 +I + ++SK L++++D L+ ++ S I++ +S + K ++++ VT+DL ++ NA +L Sbjct: 682 VIQKLEGIESKSLRTMVDDLKNQLSSVIVVFGSVSAD-KVNLIVGVTKDLSNKVNAGELV 740 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 L A+ + GG GGGRP MA +GG D A+A Sbjct: 741 GLIAQQV-GGKGGGRPDMAMAGGTEPQHLDTALA 773 >gi|89895167|ref|YP_518654.1| hypothetical protein DSY2421 [Desulfitobacterium hafniense Y51] gi|122482444|sp|Q24UT2|SYA_DESHY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|89334615|dbj|BAE84210.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 875 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 355/913 (38%), Positives = 528/913 (57%), Gaps = 58/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R FL FF GH +LPS+SLIP +DPTL+ T +GMVPFK F + +P + Sbjct: 1 MYTGNQLRDMFLNFFASKGHRILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPPFPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVR DL+ VG+T RHHTFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 61 ATTSQKCVRT----PDLEVVGKTARHHTFFEMLGNFSFGDYFKAEAIPWAWEFVTEVLKL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L+ITV+ EDEEA LW + +G+S ++I +N W+ GPCG CSEI+ D G Sbjct: 117 PIDQLWITVHPEDEEAKNLWIEKTGVSPERIK--YDPENLWAAGPVGPCGYCSEIYVDLG 174 Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + + +R++EIWNLVFMQ+ + LPK +IDTGMGLER+A+V+Q Sbjct: 175 ESRGCGKPDCALGCDCDRFLEIWNLVFMQYNRDEAGLLTPLPKQNIDTGMGLERIASVMQ 234 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D DLF +I +++G+ Y + N V +V+ DH R+ SF+++DGI P +EG Sbjct: 235 GAASNFDTDLFLPIINKVAELSGIPYHDSPKNDVAMKVVADHTRAVSFMLSDGIRPGSEG 294 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ YARLLG +P + + + + YPEL + + I LR E++ Sbjct: 295 RGYVLRRILRRAIRYARLLGIDKPFLEQIFLIIQKDYSHHYPELKENENFILNHLRLEEK 354 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F TL++G +L + L + + +L+G AF LY+T+G P+++ +++L +G++ +D Sbjct: 355 NFQATLEQGTQILQDKVKTLQEAGETMLSGADAFYLYETYGFPVELTEEMLIEQGMS-VD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-YGATQFIGYDLLRGSKFMKEDR 473 + +FN A EE R A+ S + E S K K G T F+GY L Sbjct: 414 METFNAAAEEHRRLAKEQSQQM-KAVQESAAISEKAKALGTTPFLGYHEL---------- 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V+A+ + GE V++A G +V + ++PFYAE+GGQ+ D+G Sbjct: 463 -------------AAHTKVEALFRDGEEVKDAAEGDEVLIFLRESPFYAESGGQISDSGV 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++ +V+K G H ++ +G+L T + +D R + +HSATHLL Sbjct: 510 IRSLRAEAKLIEVKKGVTGTVYHRFLLTQGVLHTGDEVEALVDEHLRLATARHHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG HV Q GS +TPD LRFD TH +TSAEL+ +ED +N+ + N+PV Sbjct: 570 QAALRAVLGEHVQQAGSLVTPDRLRFDFTHFSALTSAELQRVEDLLNEAVLANMPVAAEE 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A ASGA AL G KY D VRVVS+ G +S LCGGTH+ +TG+I L+ I+SE Sbjct: 630 MSLDAAKASGATALFGEKYGDTVRVVSM-----GDYSLELCGGTHIRATGDIGLVKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I AG+RRIEA+ G A ++ ++++ A LK +++ R++ + + + L+ Sbjct: 685 GGIGAGLRRIEAVAGAEALKYMRSLNDQILDAAQLLKAQPSDLLKRIQGLLVQVKDLE-- 742 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K QLN VE L + V ++ +S D L++ D L+ K++ G+ Sbjct: 743 --KEVQQLNAKVAKSEVESLLQQVKDVEGVPVLAAKVSAQDMDTLRNTADLLKDKMKDGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++L G + E K + + VVT L +A + + AK+ GGGGGGRP MAQ+GG + K Sbjct: 801 LVL-GAAVEGKVNWVTVVTPVGLRGLHAGQIIKEVAKIT-GGGGGGRPDMAQAGGKDAAK 858 Query: 885 ADQAIAGVASFLK 897 +A+ V + +K Sbjct: 859 LGEALDQVPAIIK 871 >gi|302561723|ref|ZP_07314065.1| alanyl-tRNA synthetase [Streptomyces griseoflavus Tu4000] gi|302479341|gb|EFL42434.1| alanyl-tRNA synthetase [Streptomyces griseoflavus Tu4000] Length = 890 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 355/923 (38%), Positives = 520/923 (56%), Gaps = 80/923 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + T+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT D Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSSQDKGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LDAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ K + IL P +IDTG+GLER+ Sbjct: 179 GPEF-GAEGGPAVNDERYVEIWNLVFMQYERGEGTGKDDFEILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ID +I + ++TG++Y + V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYEIDTSMAVIARATELTGVQYGDAHASDVSLRVVTDHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE+ Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELVTDRERIEKVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G +LD ++ +L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEENAFLKTLKAGTNILDTAITDTKSAGSAVLPGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR +A+A +L +G + + + ++ GAT FIGY Sbjct: 418 LS-VDEDGFRRLMKEQREKAKADALSKKTGHADLGAYREIADRAGATDFIGY-------- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T G S++V I+ G A G +VE+V D+TPFYAE GGQ+ Sbjct: 469 --------------TATEGESTVV-GILVDGVSSPAATEGDEVEIVLDRTPFYAEGGGQI 513 Query: 529 GDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG D G ++I D QK G++VH +V+ G + +ID + R ++ H Sbjct: 514 GDTGRIRADNGAVIEIRDCQKPVPGVYVHKGVVQVGEITVGARAHASIDGRRRTAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + +A + +E +N++++++L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLSRDL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVRADVMGIDEARKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + L LK GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVNQLTELLK-------GRSEELPEKV 741 Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812 ++++ A++ LQ K DV ++ + +V +L+ + Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAAGLAESAK--DVRGVAVVTGQVPDGTTPDDLRKL 799 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869 + ++ +IQ G ++V + L V+ + R A DL R +AK L GGGGG Sbjct: 800 VLDVRGRIQGGRAVVVALFTVNNGKPLTVIATNDAARERGLKAGDLVRTAAKTL-GGGGG 858 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+P +AQ GG N +A+ V Sbjct: 859 GKPDVAQGGGQNPAAVGEAVDAV 881 >gi|282850479|ref|ZP_06259858.1| alanine--tRNA ligase [Veillonella parvula ATCC 17745] gi|282579972|gb|EFB85376.1| alanine--tRNA ligase [Veillonella parvula ATCC 17745] Length = 871 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 346/908 (38%), Positives = 503/908 (55%), Gaps = 59/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P +TT Sbjct: 4 NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD+ R Sbjct: 64 QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176 Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 C P PG + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL +I+A+ + G+KY + N V+ +VI DH R+ + LI+DG+LP+NEGRG Sbjct: 235 KTNFETDLIFPIIEATAKRAGVKYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ERF Sbjct: 295 YVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERF 354 Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKAAVIPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A++EQR RAR +KE +K D L Sbjct: 414 GFEAAMKEQRERAREA--------------RVKED--------------AKVATPDITFL 445 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++ +S V + + E ++ A G ++ V+ TPF+AE GGQLGDTG +G Sbjct: 446 KDEELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 +++I + ++ EG H V G + + L +D R ++ NH+ATHLLH A Sbjct: 506 PMGKVEIHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAA 565 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 566 LKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SE+ I Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGI 680 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEAITG+ A ++ +AS LK + R+ ++ E + +L Sbjct: 681 GSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEERLHQVLTEAKDTAKELEQ 740 Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830 +++L + DV F+ + EL+ + D L K SG++++ I Sbjct: 741 IRKELSAAGAADIIAGKVVVGDVEFVGAAVKASSIDELRDLADMGLDKLNGSGVVLVGAI 800 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + + V++D++ + A ++ + +A+V GG GGGRP MAQ+GG K +A+ Sbjct: 801 MGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMEAL 859 Query: 890 AGVASFLK 897 LK Sbjct: 860 KAGGEALK 867 >gi|302525836|ref|ZP_07278178.1| alanyl-tRNA synthetase [Streptomyces sp. AA4] gi|302434731|gb|EFL06547.1| alanyl-tRNA synthetase [Streptomyces sp. AA4] Length = 887 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 344/915 (37%), Positives = 513/915 (56%), Gaps = 69/915 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I FL F+ GH +PS+ LI +DP L+F N+GMV FK F G+ P Y T Sbjct: 2 DTHEITDRFLRHFESRGHTRVPSAPLI-LDDPNLLFVNAGMVQFKPYFLGEAPPPYPRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKCVR D+D VG+T RH+TFF+M GNFSFG YFKE AI+ AW+L+TK Sbjct: 61 SVQKCVRT----PDIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAIENAWELITKSQDDGG 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F LD R++ TVY++D EA LW+K++GL +D+I DN+W M GP GPCSEI++ Sbjct: 117 FGLDPDRIWATVYEKDSEAAGLWRKLTGLPSDRIQVRDGKDNYWDMGVPGPGGPCSEIYY 176 Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLE 231 D+G G G + +RYIEIWNLVFMQ + ++ + LPK +IDTGMG+E Sbjct: 177 DRGPAY-GREGGPVADEDRYIEIWNLVFMQDVRGDQSPKLGHPPIGELPKKNIDTGMGVE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADG 289 R+AT+LQ N Y+ DL + +I +E+ +G +Y N+ V RVI DH R+ LI DG Sbjct: 236 RVATILQGVENVYETDLVRPVIGRAEEFSGRRYGANHADDVRFRVIADHARTGVLLIGDG 295 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P N+GRGYVLRR++RR + RLLG EP++ + MG YPELI I E Sbjct: 296 VTPGNDGRGYVLRRLLRRIVRSTRLLGVQEPVLQEFAKVVSQTMGPTYPELISGFDRISE 355 Query: 350 TLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +R E+E F TL G + D + G ++L GD AF+L+DT+G P+D+ ++ Sbjct: 356 VVRVEEEAFLATLTSGSRIFDLAAAETKKGGGDVLAGDKAFQLHDTYGFPIDLTLEMAAE 415 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGS 466 +GL +D F +EEQR RA+A + SG + + + E++G T+F+GY L Sbjct: 416 QGLT-VDEAGFRTLMEEQRKRAKADAAARKSGHGDLSEYRKVLEQHGETEFLGYTEL--- 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + D KV+ +++ G V +G+K E+V D+TPFYAE+GG Sbjct: 472 ---QADAKVV-----------------GLLEDGLPVRSVAAGRKAELVLDRTPFYAESGG 511 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ DTG +GDG+ L++ DVQK G+FVH V +G + + L ++D R + + Sbjct: 512 QIADTGVLVGDGVELKVLDVQKIVPGLFVHRVEVTQGEVGIDTRLTGSVDANRRLSIERS 571 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H A+ G +Q GS P +RFD T +++ L +E VND + + Sbjct: 572 HSATHLVHAAVRGAYGKRAAQAGSLNAPGRMRFDFTTPGAVSTDILTEVEQEVNDYLQTD 631 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 + V + ++ A+ GA AL G KY + VRVV D G +S LCGGTHV G++ Sbjct: 632 VEVQSYTTTKDKALELGAVALFGEKYGNDVRVV-----DMGEYSRELCGGTHVGRIGQLG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-- 764 L+ +VS++S+ +G+ R+EA+ G A H+ + + LA+ KV + GR+E++ Sbjct: 687 LVKLVSDASVGSGVHRVEALVGPDALKHVRKEQLLVSQLANTFKVPSDELPGRIEDVLSR 746 Query: 765 --------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816 E+ R Q++ + L +D+S V+ ++ ++ +VD L+++ + Sbjct: 747 LKNAEKEIEQLRTQQVLGSAGALADKAQDVSG-----VSVVAEVVPDVDGNGLRALASDI 801 Query: 817 QKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + ++ + G++ L S EK A V+ + A L A+ + GG GGG+P M Sbjct: 802 RGRLGDRPGVVALFAPSGEKVAFVVATTSAARDKGIAAGKLVPSFAEAI-GGRGGGKPDM 860 Query: 875 AQSGGPNGNKADQAI 889 AQ GG N A+QA+ Sbjct: 861 AQGGGSNPAGAEQAV 875 >gi|218294683|ref|ZP_03495537.1| alanyl-tRNA synthetase [Thermus aquaticus Y51MC23] gi|218244591|gb|EED11115.1| alanyl-tRNA synthetase [Thermus aquaticus Y51MC23] Length = 881 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 331/786 (42%), Positives = 465/786 (59%), Gaps = 51/786 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 + IR +L FF+ GH LPS SLIP NDP+L+FT++GM P K F G KP+ Sbjct: 2 RTAEIREKYLSFFESKGHLRLPSFSLIPENDPSLLFTSAGMAPLKPYFLGA-KPIFGGRE 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ +TT QKC+R G D++NVGRT RH+TFFEMLGNFSFG YFK+ AI AW+ LT+ Sbjct: 61 WRRITTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAILWAWEFLTEH 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPC 172 LD RL++TVY++D+EA+ +W+ + G+ ++I R ++N+W + GP GPC Sbjct: 117 LKLDPERLWVTVYEDDDEAYAIWRDLVGVPEERIGRFGEDENYWPGGAITHGPNGPSGPC 176 Query: 173 SEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----ILPKMSIDT 226 SEIF+D+G P ++ G+R++EIWNLVF Q+++Q LP+ +IDT Sbjct: 177 SEIFYDRGPAFGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNIDT 236 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 GMGL R+A +LQ+ + Y D F +I+ ++G Y G V+HRVI DH+R+ + Sbjct: 237 GMGLYRVAAILQDVEDFYRTDTFYPIIERVALLSGRPYLGKESVSHRVIADHVRAVVAAL 296 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG+ +N GRGYV+RR++RRA+ + LLG EP + L P + +G YPE+ + Sbjct: 297 ADGVTFSNTGRGYVIRRLLRRALRHGYLLGLAEPFLHRLAPVVAELLGDFYPEMRENLQA 356 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ +R E+ERF +TL+ GL LD +LS L E+L G AF+LYDT+G PLD+ +I Sbjct: 357 VEKQIRLEEERFLETLEGGLRRLDALLSGLKPGEVLPGQEAFRLYDTYGFPLDLTVEIAA 416 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYDLL 463 RG G+D F +A+EEQ+ R+RA ++ ++ L+E Y GAT+F+GY L Sbjct: 417 ERGY-GVDTEGFKRAMEEQQERSRA-AMAFEREIFKRSAQVLEELYAERGATEFLGYGTL 474 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + V A++ E + EA G +V+VV D+TPFYAE Sbjct: 475 E-----------------------AEAQVLALLAGDESLPEAGPGTEVQVVLDRTPFYAE 511 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G G R ++ K GIF+H A VE G+L + +D RR Sbjct: 512 GGGQIGDFGLLEWPGGRARVETTLKTERGIFLHRARVEEGVLGVGERVRAVVD-PRRRDT 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATHLLH AL +LG HV Q GS + PD LRFD TH +P+ EL+ IE VN I Sbjct: 571 ERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLKGEELERIELLVNRWI 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVSST 702 + PV R + E+A GA AL G KY + VRVV VE G+ S LCGGTHV T Sbjct: 631 MADFPVTWRYLPLEEAKKEGAMALFGEKYGEVVRVVRVEGSPVPGLESKELCGGTHVRRT 690 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 GEI I SE ++ AG+RRIEA+TG+ A G +LK+LA L+V + + R+E+ Sbjct: 691 GEIGAFLIRSEEAVSAGVRRIEAVTGEGAIRFARGALSRLKALAERLEVGEAALEERLEK 750 Query: 763 IWEEYR 768 + E++ Sbjct: 751 LLAEFK 756 >gi|32266358|ref|NP_860390.1| alanyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449] gi|41018183|sp|Q7VHV4|SYA_HELHP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|32262408|gb|AAP77456.1| alanyl-tRNA synthetase [Helicobacter hepaticus ATCC 51449] Length = 892 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 356/922 (38%), Positives = 516/922 (55%), Gaps = 86/922 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF H++ S L+P +D +L+FTN+GMV FK+IFTG+ P T+ Q Sbjct: 6 IRKQYLDFFASKSHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPAPPRATSSQ 64 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI AW+ +T+ + L Sbjct: 65 LCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKKEAIAYAWEFVTQVLGFSKDVL 124 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184 Y+T+++ D+EA++LW + +I R+ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 125 YVTIHESDDEAYELW--CEHIEPSRIKRMGDKDNFWQMGDSGPCGPCSEIYVDQGEKYFQ 182 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 EG+R++EIWNLVFMQFEQ+ R +LPK SIDTGMGLER+ + + K NN+ Sbjct: 183 SDEDYFGGEGDRFLEIWNLVFMQFEQKGGV-RTLLPKPSIDTGMGLERVIALKEGKINNF 241 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIV-------------------NHRVIVDHLRSSSFL 285 D LF L+Q +++T Y G++ + + RVI DH RS +FL Sbjct: 242 DTSLFAPLMQCLQKLTNKTYFGDDEIFDRLDLQEAEMIKIKNIQASFRVIADHARSVAFL 301 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 +A G+ EGRGYVLRRI+RRA+ + LLG +P + ++ +C MG Y L + K Sbjct: 302 LAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLKKPFLWQVVEVVCESMGVHYSYLQERKR 361 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL------GKDEIL-NGDVAFKLYDTHGLPL 398 I+E ++E+ERF +T++ G+ L L L K EIL +G+VAFKLYDT+G PL Sbjct: 362 AIKEQCKNEEERFFETIESGMTLFSTELEKLQSAVQTQKQEILFSGEVAFKLYDTYGFPL 421 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ QD+L R + +D+ +F Q + EQ+SR++A G G E + +L K+G +F+ Sbjct: 422 DLTQDMLRERHIQ-VDMQAFEQCMNEQKSRSKASWKGSGDALKEGDFNALLSKFGENKFV 480 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQ 517 GY E K C+ +KA++ Q ++V+ + V+ D+ Sbjct: 481 GY----------ESNKETCK-------------IKALLDSQFKMVDTLSPSSQGWVMLDK 517 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH-------AIVERGILRTEMS 570 TPFY E+GG +GD G LQ QK A+ + I L+ Sbjct: 518 TPFYPESGGPVGDKGALYSTNRILQSAQAQKFAQVLDTQKFFGLNLSQIEALSALKVGQE 577 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +D R +++ +HSATHLLH AL TILGSH++Q GS + P LRFD +H K +T+ Sbjct: 578 VFAEVD-SIRFEIAKHHSATHLLHLALRTILGSHIAQAGSLVQPHRLRFDFSHPKALTNE 636 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 E+ IE+ VN+ I Q+ + M+ + A A GA AL G KY +RVRVVS S Sbjct: 637 EITHIENLVNEQILQSNAQLCENMDMQQAKAKGAMALFGEKYGERVRVVSFG------DS 690 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LCGG HV++T EI YIV ES + +G+RRIEA+ G A + G++ L+ + Sbjct: 691 IELCGGIHVNNTAEIGSFYIVKESGVSSGVRRIEAVCGNAAYHY--GKNALLELSRARES 748 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLNVEDLSCHKIADVNFMSHIISEVDSK 807 + +V+ +E+I K+QL AK K + +V+ L +I V + + V + Sbjct: 749 LKAQDVLQGIEKI-----KMQLNEAKEKANKAKQSVKSLDYEEINGVRLIVLKLDSVSAN 803 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867 E K ++D + + +S I+L+ S K + V V L A + A+ L GG Sbjct: 804 EAKEIIDRSKNENESVAILLLSESNNKISIVAGVKNAPL----KAGAWVKQVAQEL-GGN 858 Query: 868 GGGRPHMAQSGGPNGNKADQAI 889 GGGR A +GG + +K QA+ Sbjct: 859 GGGRDDFATAGGKDIDKISQAL 880 >gi|257059315|ref|YP_003137203.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8802] gi|256589481|gb|ACV00368.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8802] Length = 879 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 347/898 (38%), Positives = 524/898 (58%), Gaps = 54/898 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+F+ H++LPS+SL+P DPT++ T +GM+PFK IF GQ+ P Y TT Sbjct: 11 AQIRDKFLQFYASKHHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKNPDYPRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI +W+L T+ F+L Sbjct: 70 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWSWELSTQVFNLPPEN 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 + ++V++ED+EAF++W+ G+ +I R+ DNFW TGPCGPCSE+++D + Sbjct: 126 IVVSVFEEDDEAFQIWQNSIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPEL- 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ NNY Sbjct: 185 GEENIDLEDDSRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + ++ G+ Y+ + V+ +VI DH+RS +IADGI +N RGYVL Sbjct: 245 ETDLIFPIIETAAKIAGINYKNTDKKTKVSLKVIGDHVRSVVHMIADGITASNTDRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + S YP + + + I+ L+ E+ RF +T Sbjct: 305 RRLIRRVVRHGRLIGIEGEFITQVAETAMQLSESVYPNVRERETAIKGELQREESRFLET 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL +++ K+ ++G AF LYDT+G PL++ Q+I +GL +D+ F A Sbjct: 365 LERGEKLLAEIIAKTPKNTAISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEGFEAA 423 Query: 422 LEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++EQ+ R++A ++ L G+ +K L E T+F+GY Sbjct: 424 MKEQQERSKAAHETIDLTVQGSLDK----LAEHIHPTEFLGYS----------------- 462 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + + V+A++ G+ VE A +G +V+++ DQTPFY E+GGQ+GD G GD Sbjct: 463 ------SPQIMAKVQAVLVDGKTVENASAGTEVQIILDQTPFYGESGGQIGDRGYLTGDN 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++I DV KK GIFVH VERGI+ E ++ TID RR++ +H+ATHLL AL Sbjct: 517 LVVRIEDV-KKESGIFVHFGRVERGIIAVENTVTATIDRACRRRVQAHHTATHLLQAALK 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ++ +SQ GS + D LRFD + ITSAEL+ IE +N IA+ IM+ E Sbjct: 576 KVVDESISQAGSLVDFDRLRFDFNCPRSITSAELQEIEALINTWIAEAHDTQVSIMDLEK 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GA A+ G KY+ VRV+ V GV S LCGGTHV +T EI L I+SES I + Sbjct: 636 AKAKGAIAMFGEKYSAEVRVIDVP----GV-SMELCGGTHVKNTAEIGLFKIMSESGISS 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAK 776 G+RRIEA+ G +L ++ +K L K+ + R+ + E + Q L K Sbjct: 691 GVRRIEAVAGPAVLEYLNVRETVVKDLCDRFKIKPEEISDRITALQSELKTTQKELEAVK 750 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISKE 833 ++L + D + V ++SE +D K L++ + LQ+K+ ++L + E Sbjct: 751 QELAVAKSDQLLSQAESVGSFKILVSEMGDLDGKALQTAAERLQQKLGEAAVILASVPSE 810 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889 K VL+ D + + + + ++ + GGGGGGRP++AQ+GG + NK +A+ Sbjct: 811 DKV-VLVAAFSDKVHKEKQLMAGKFIGEIAKICGGGGGGRPNLAQAGGRDANKLPEAL 867 >gi|219669584|ref|YP_002460019.1| alanyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2] gi|219539844|gb|ACL21583.1| alanyl-tRNA synthetase [Desulfitobacterium hafniense DCB-2] Length = 875 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 356/913 (38%), Positives = 527/913 (57%), Gaps = 58/913 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R FL FF GH +LPS+SLIP +DPTL+ T +GMVPFK F + +P + Sbjct: 1 MYTGNQLRDMFLNFFASKGHRILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPPFPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKCVR DL+ VG+T RHHTFFEMLGNFSFG YFK AI AW+ +T+ L Sbjct: 61 ATTSQKCVRT----PDLEVVGKTARHHTFFEMLGNFSFGDYFKAEAIPWAWEFVTEVLKL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +L+ITV+ EDEEA LW + +G+S ++I +N W+ GPCG CSEI+ D G Sbjct: 117 PIDQLWITVHPEDEEAKNLWIEKTGVSPERIK--YDPENLWAAGPVGPCGYCSEIYVDLG 174 Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + + +R++EIWNLVFMQ+ + LPK +IDTGMGLER+A+V+Q Sbjct: 175 ESRGCGKPDCALGCDCDRFLEIWNLVFMQYNRDESGLLTPLPKQNIDTGMGLERIASVMQ 234 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 +N+D DLF +I +++G+ Y + N V +V+ DH R+ SF+++DGI P +EG Sbjct: 235 GAASNFDTDLFLPIINKVSELSGIPYHDSPKNDVAMKVVADHTRAVSFMLSDGIRPGSEG 294 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA+ YARLLG +P + + + + YPEL + + I LR E++ Sbjct: 295 RGYVLRRILRRAIRYARLLGIDKPFLEQIFLIIQRDYSHHYPELKENENFILNHLRLEEK 354 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F TL++G +L + L + + +L+G AF LY+T+G P+++ +++L +G++ +D Sbjct: 355 NFQATLEQGTQILQDKVKTLQEAGETMLSGADAFYLYETYGFPVELTEEMLIEQGMS-VD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-YGATQFIGYDLLRGSKFMKEDR 473 + +FN A EE R A+ S + E S K K G T F+GY L Sbjct: 414 METFNAAAEEHRRLAKEQSQQM-KAVQESAAISEKAKALGTTPFLGYHEL---------- 462 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + V+A+ + GE V++A G +V + ++PFYAE+GGQ+ D+G Sbjct: 463 -------------AAHTRVEALFRDGEEVKDAAEGDEVLIFLRESPFYAESGGQISDSGL 509 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 ++ +V+K G H ++ +G+L T + +D R + +HSATHLL Sbjct: 510 IRSLRAEAKLIEVKKGVTGTVYHRFLLTQGVLHTGDEVEALVDEHLRLATARHHSATHLL 569 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG HV Q GS +TPD LRFD TH +TSAEL+ +ED +N + N+PV Sbjct: 570 QSALRAVLGEHVQQAGSLVTPDRLRFDFTHFSALTSAELQRVEDLLNKAVLANMPVAAEE 629 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ + A ASGA AL G KY D VRVVS+ G +S LCGGTH+ +TG+I L+ I+SE Sbjct: 630 MSLDAAKASGATALFGEKYGDTVRVVSM-----GDYSLELCGGTHIHATGDIGLVKIISE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 S I AG+RRIEA+ G A ++ ++++ A LK +++ R++ + + + L+ Sbjct: 685 SGIGAGLRRIEAVAGAEALKYMRSLNDQILDAAQLLKAQPSDLLKRIQGLLVQVKDLE-- 742 Query: 774 HAKRKLQLN-------VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K QLN VE L + V ++ +S D L++ D L+ K++ G+ Sbjct: 743 --KEVQQLNAKVAKSEVESLLQQVKDVEGVPVLAAKVSAQDMDTLRNTADLLKDKMKDGV 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 ++L G + E K + + VVT L +A + + AK+ GGGGGGRP MAQ+GG + K Sbjct: 801 LVL-GAAVEGKVNWVTVVTPVGLRGLHAGQIIKEVAKIT-GGGGGGRPDMAQAGGKDAAK 858 Query: 885 ADQAIAGVASFLK 897 +A+ V +K Sbjct: 859 LGEALDQVPGIIK 871 >gi|256371739|ref|YP_003109563.1| alanyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331] gi|256008323|gb|ACU53890.1| alanyl-tRNA synthetase [Acidimicrobium ferrooxidans DSM 10331] Length = 854 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 322/791 (40%), Positives = 453/791 (57%), Gaps = 57/791 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + +R F E+F + GH +PS+SL+P +DPTL+FT +GMVPFK F G+E P Y+ T Sbjct: 2 DSNDLRRAFREYFVERGHVPVPSASLVP-HDPTLLFTVAGMVPFKPYFLGEEVPPYRRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 ++QKC+RAGGKHNDLD VG T RH TFFEMLGNFSFG YFKE AI AW L+T+ LD Sbjct: 61 SIQKCMRAGGKHNDLDQVGTTARHLTFFEMLGNFSFGDYFKEGAIPYAWGLVTEVLGLDP 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+ITV+ D+EA ++W + G+ ++I R+ DN+W M ETGPCGPCSEI++D+GE Sbjct: 121 DRLWITVHTSDDEAERIWIEACGVRPERIQRL-DEDNWWQMGETGPCGPCSEIYYDKGES 179 Query: 183 I-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GG P + ER++EIWNLVFMQ+++ LP IDTG GLER+ VLQ Sbjct: 180 YGAGGGPAVGSD-ERFLEIWNLVFMQYDRHPDGSLTPLPAPCIDTGAGLERIVPVLQGHD 238 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEG------NNIVNHRVIVDHLRSSSFLIADGILPANE 295 + ++ DL L++ ++ +TG +Y G V R++ DH R+++FL+ADG++P NE Sbjct: 239 SVFETDLMWPLMEEAQSLTGRRYGGRFGADAGGDVGLRIMADHARATTFLLADGVVPTNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRRI+RR + A+LLG P++ ++ MG AYPE+ + I + E+ Sbjct: 299 GRGYVLRRIIRRLVARAQLLGAKGPVVEPMVRMTAAVMGEAYPEVARELETIVQHAAREE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERF TL G LLD L + + G +AFKL+DT+GLP+++ ++ RG++ +D Sbjct: 359 ERFAATLALGRPLLDAAL----EGGSVPGALAFKLHDTYGLPIELTMELAAERGVS-VDR 413 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F +A+ QR RAR GLG+ E + + ++G ++F GY+ Sbjct: 414 AGFEEAMAAQRERAR--QAGLGTEAVEHPVSAEVLREHGRSEFTGYE------------- 458 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 A +G ++ A G + V D+TPFY E GGQLGDTG Sbjct: 459 -------------------ATEDEGRLLALASEGDVLVAVLDRTPFYPEGGGQLGDTGTI 499 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 GDG RL I D + G+ HH G + +D + R L ++H+ATHLLH Sbjct: 500 EGDGFRLTIIDTDQPVAGVIRHHVGAVEGEPVIGALVRAVVDAERREGLRVHHTATHLLH 559 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + PD LRFD TH P+T E++ IE V I ++ V +M Sbjct: 560 WALREVLGPHVKQQGSLVAPDHLRFDFTHWGPLTPDEIEEIERRVAAEIIRDSVVTVELM 619 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 +R++AI GA A G +Y D VRVV G S LCGGTH+ G I L I SES Sbjct: 620 DRDEAIRRGAVAFFGDRYGDVVRVVHA-----GESSVELCGGTHLDRLGRIGHLRITSES 674 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEK-LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 SI A RR+EA+ Q A + +D + L L + + + RV+ I E ++ + Sbjct: 675 SIGANTRRVEAVV-QLAALEVAHRDRRLLDELERIVPGGRDGIGERVDRIVERAKRAESE 733 Query: 774 HAKRKLQLNVE 784 A+ + + E Sbjct: 734 LARERTRTLAE 744 >gi|330897295|gb|EGH28714.1| alanyl-tRNA synthetase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 642 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 315/681 (46%), Positives = 414/681 (60%), Gaps = 50/681 (7%) Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 Y T QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LT E Sbjct: 1 YTRAVTSQKCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITYAWTFLTSE 60 Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGP 168 +L + +L++TVY D+EA+ +W K G+ A++++RI N DNFW+M +TGP Sbjct: 61 KWLNLPKEKLWVTVYATDDEAYDIWTKEIGVPAERMVRIGDNKGAPYASDNFWTMGDTGP 120 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CGPCSEIFFD G I GG PGS EE G+RYIEIWN VFMQF + LP S+DTG Sbjct: 121 CGPCSEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTG 180 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287 MGLER++ VLQ +NY+IDLF+ L+ AS + G +N + +V+ DH+RS FLIA Sbjct: 181 MGLERVSAVLQHVHSNYEIDLFQSLLAASAKAIGCS--NDNQASLKVVADHIRSCGFLIA 238 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+LP+NEGRGYVLRRI+RRA + LG ++ AL EMGSA+PEL+Q + I Sbjct: 239 DGVLPSNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALVAEMGSAFPELVQQQSHI 298 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 E L+ E+E+F KTL++GL +L+ L+ L K ++ G+V FKLYDT+G P+D+ DI Sbjct: 299 ERVLKGEEEQFAKTLEQGLKILEQDLADL-KGTVVPGEVVFKLYDTYGFPMDLTGDIARE 357 Query: 408 RGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 R L +D F + ++ QR RAR A S G+ + K+ ATQF GY Sbjct: 358 RNLT-LDEAGFEREMDAQRVRARSASSFGMDYNSLVKVDV-------ATQFTGY------ 403 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 T G +S+V A+ ++G+ V G++ V+ D TPFYAE+GG Sbjct: 404 ----------------SATTGSASVV-ALYKEGQSVSHLNEGEEGVVILDITPFYAESGG 446 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD+G R ++D K G F+HH +V G L + + + R +N Sbjct: 447 QIGDSGFLQAGDARFDVSDTTKTG-GAFLHHGVVASGSLSVGAQVETQVADEVRDATKLN 505 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH AL +LG HV Q GS + LRFD +H + I +L+++ED VN I +N Sbjct: 506 HSATHLLHAALRQVLGEHVQQKGSLVDSQRLRFDFSHFEAIKPEQLRALEDIVNAEIRKN 565 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V+T + + A GA AL G KY D VRV+S+ GG S LCGG H S TG+I Sbjct: 566 TEVMTEETDIDTAKKKGAMALFGEKYGDSVRVLSM----GGEFSVELCGGIHASRTGDIA 621 Query: 707 LLYIVSESSIRAGIRRIEAIT 727 L IVSE + AG+RRIEA+T Sbjct: 622 LFKIVSEGGVAAGVRRIEAVT 642 >gi|167764982|ref|ZP_02437103.1| hypothetical protein BACSTE_03375 [Bacteroides stercoris ATCC 43183] gi|167697651|gb|EDS14230.1| hypothetical protein BACSTE_03375 [Bacteroides stercoris ATCC 43183] Length = 873 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 349/923 (37%), Positives = 514/923 (55%), Gaps = 87/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PGS +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A +TG Y N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMTGATYGKNEQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LI + ++ E++ F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ DI F+ +++Q+ RAR ++ + +G W +L+E G T+F+GY Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAVETGD----WITLQE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D+TPF Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------FQIVLDKTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E + +D R Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHLEAPFMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756 ++TG I ++ IVSESS+ AG+RRIEA TG R L + ++ L + + G + Sbjct: 671 AATGNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDAFQDTMRDLKALFNNAPDLSGTI 730 Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 +EE E++ K + K KL N+++++ K+ + F + +I + +K Sbjct: 731 RKYIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEVNGTKV--IKFCAAMIP---ADTVK 785 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G E K + ++++++L+ A +L + +AK++ GGGG Sbjct: 786 NIAFQLRGEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 844 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + + A+ V Sbjct: 845 GQPHFATAGGKNPDGLNAAVDKV 867 >gi|295695750|ref|YP_003588988.1| alanyl-tRNA synthetase [Bacillus tusciae DSM 2912] gi|295411352|gb|ADG05844.1| alanyl-tRNA synthetase [Bacillus tusciae DSM 2912] Length = 878 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 350/907 (38%), Positives = 526/907 (57%), Gaps = 54/907 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FLEFF H++ PS+SL+P +DP+L++ N+GM P K F G++ P + + Sbjct: 4 AEIRKKFLEFFASKDHDVYPSASLVPVDDPSLLWINAGMAPLKPFFDGRKVPPNPRIASS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVG+T RH TFFEMLGNFS G YFK+ AI AW+ LT+ LD R Sbjct: 64 QKCIRT----NDIENVGKTARHQTFFEMLGNFSIGDYFKKEAIDWAWEFLTEHMGLDPER 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L +T++ ED+EA++LW + G+ A +I R+ DNFW + E GP GPCSEIF+D+GE Sbjct: 120 LSVTIHPEDDEAYELWHRRIGVPAHRIFRM--EDNFWEIGE-GPSGPCSEIFYDRGENRG 176 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + E +R++EIWNLVF QF LPK +IDTGMGLERMA+V+Q+ + Sbjct: 177 CGRPECNVGCECDRFLEIWNLVFTQFNHNPDGTYTPLPKKNIDTGMGLERMASVMQDVDS 236 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N+D DLF+ +I+A+ + G++Y E V +VI DH+R++ F + DG+LP NEGR Y+ Sbjct: 237 NFDTDLFRPIIEAAAEAAGVQYGQEKQWDVALKVIADHIRTAVFAVGDGVLPGNEGRSYI 296 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RR++RRA+ Y R LG+ P + L+P + MG AYPE+++ I +++E+ERF + Sbjct: 297 IRRLLRRAVRYGRNLGFDRPFLYRLVPVVGEVMGEAYPEIVEKGDFIVRAVKAEEERFLE 356 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL G +L+ + L L G+ AF+LYDT G P+D+ ++I +G+ +D F Sbjct: 357 TLAEGEQVLEDYIEKLRSAGRTTLAGEDAFRLYDTFGFPIDLTKEIASEQGI-DVDEEGF 415 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 QALE QR RARA + S +++ L + ++F+GY++L Sbjct: 416 AQALEAQRERARAARQDVESMQSKR--GVLVDLEAPSRFVGYEVLE-------------- 459 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 S V+ +V +VE G + +V ++TPFYAE+GGQ+ D G Sbjct: 460 ---------TQSRVEVLVVDDRVVERVSEGDQCLIVLNETPFYAESGGQVADRGTIETAT 510 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 RL++ DVQK G VH V RG + + +D + R + NH+ATHLLH AL Sbjct: 511 ARLEVEDVQKAPRGQHVHRCRVVRGTVTAGEVVRARVDRRYREDIIKNHTATHLLHKALR 570 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG HV+Q GS + LRFD +H P+ EL+++E VN+ I +N PV R M ++ Sbjct: 571 EVLGEHVAQAGSLVADSRLRFDFSHYGPLAPEELEAVERVVNEEIWRNEPVDIREMPLDE 630 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GA AL G KY +RVRVV G S LCGG HV T EI + IVSE+ I + Sbjct: 631 AKAMGAMALFGEKYGERVRVVK-----AGDFSIELCGGCHVRRTSEIGVFKIVSETGIGS 685 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIH 774 G+RRIEA+TG+ A + L + + L AS L+V+ +V ++E++ E R+L+ Sbjct: 686 GVRRIEAVTGRHAYAFLDSRLKGLDRAASLLRVAPADVPDKLEQVLGDMKETERELESWR 745 Query: 775 AK--RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + R L + D I V ++ ++ +++ ++D L + I SG+++L G + Sbjct: 746 DRWIRGQALRLAD-RVTDIQGVPVVAEVVEGATPDQMRRMVDVLWETIHSGVVVL-GSKQ 803 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 E K + V+ D + + +A L + GGGGGG+P +AQ+GG + K +A++ Sbjct: 804 EDKVMFVAAVSPDWVAKGLHAGQLVK-EVAAAAGGGGGGKPDLAQAGGRHPEKLAEALSR 862 Query: 892 VASFLKK 898 V ++ + Sbjct: 863 VPGWVMR 869 >gi|188586395|ref|YP_001917940.1| alanyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF] gi|205830160|sp|B2A5J7|SYA_NATTJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|179351082|gb|ACB85352.1| alanyl-tRNA synthetase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 878 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 338/911 (37%), Positives = 524/911 (57%), Gaps = 64/911 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FLEFF+ H + S S+IP NDP+++ +GM P K FTG++ P + T QK Sbjct: 6 IRKKFLEFFETKDHYVRKSYSIIPENDPSILLIGAGMAPLKPYFTGEKTPPSPRMATSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR D++ VG T RH TFFEMLGNFSFG YFK AI ++ T+ L +L+ Sbjct: 66 CVRTP----DIEEVGITARHATFFEMLGNFSFGDYFKREAIFWGYEFCTEWLSLSPEKLW 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ 180 +VY +D+EA+ +W G+ ++I+R+ DNFW + TGPCGPCSEI +D+G Sbjct: 122 ASVYLDDDEAYDIWHDEVGIPHERIVRLGKEDNFWEIG-TGPCGPCSEIHYDRGAEYGCD 180 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 +C PG + +RY+EIWNLVF QF + + L + +IDTG GLER+A +LQ Sbjct: 181 SPDCKPGC------DCDRYLEIWNLVFTQFNRDEEGNYTTLKQKNIDTGAGLERLAVLLQ 234 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 + + Y+ID+ K ++ Q++G+ Y + + ++ R+I +HLRS +F++ DG+LPANEG Sbjct: 235 DVPSIYEIDIIKPILDHVIQLSGVNYGEDNDKDISLRIITEHLRSVTFIVGDGVLPANEG 294 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRRI+RRA + +LLG + M + + M AYPEL + + I++ + E++ Sbjct: 295 RGYVLRRILRRASRHGKLLGIKDTFMSDGVDLVIDIMKEAYPELEERREYIKKIVEIEED 354 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF KT+D+GL +L+ L ++ K L G AFKLYDT+G PL++ ++I+ G +D Sbjct: 355 RFNKTVDQGLGILNEFLENMNKQGKNTLEGSDAFKLYDTYGFPLELTREIVQENGYT-LD 413 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + L QR +AR A G T +++ +F GYD L Sbjct: 414 EQGFQEELNRQREQARKAQQESEGMLTESNAMKQFQDQ--KVEFTGYDNLEQE------- 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S I+ I + + +++E G++V+++ + TPFY E+GGQ+GDTG Sbjct: 465 ---------------SQIIGIIDHKNDDLLKEVQEGEEVQILINPTPFYGESGGQIGDTG 509 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D R + + V V G LRT + +DYQ R+ + NHSATH+ Sbjct: 510 EIFSDNGRAHVKNSSVNGYDQTVLQVKVTDGQLRTGDKVSGKVDYQRRKDIMKNHSATHM 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH+AL ++G+HV Q GS + PD LRFD TH P++ E+K IE VN +I +N V Sbjct: 570 LHYALKKVVGAHVEQAGSLVAPDRLRFDFTHFAPLSEDEIKQIELEVNKLIRENSRVRVI 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + E+A GA AL KY VRV+ + + LCGGTH ++TGE+ L I + Sbjct: 630 NTDLEEAKELGAVALFEDKYEQEVRVIEIG------PAVELCGGTHATATGELGLFKIDN 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ++S+ AG+RR+EA+TGQ A +L + E+++ +A LK + VV + +E E+++ Sbjct: 684 QTSVGAGVRRLEALTGQHALEYLDQKAEQIQDIAELLKTEENKVVEKTQEFLEDFKAKDK 743 Query: 773 IHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K K Q+ V+DL I+D +++ +++ D+ L+ + + ++ K+ SG+++L Sbjct: 744 EIEKLKNQIFTFKVDDLLAQSKDISDFKLVANQLNDFDADSLRDLSERVKNKLDSGVVVL 803 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G S KA + +VT+DL+++ +A ++ + AK+ GGGGGGRP MAQ+GG +K + Sbjct: 804 -GSSTNNKALFVAMVTKDLVEKGVHAGNIVKEVAKIT-GGGGGGRPDMAQAGGKEPDKLN 861 Query: 887 QAIAGVASFLK 897 +AI V + ++ Sbjct: 862 EAIMKVETLVR 872 >gi|282882868|ref|ZP_06291473.1| alanine--tRNA ligase [Peptoniphilus lacrimalis 315-B] gi|281297279|gb|EFA89770.1| alanine--tRNA ligase [Peptoniphilus lacrimalis 315-B] Length = 874 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 349/904 (38%), Positives = 523/904 (57%), Gaps = 70/904 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+K GH++LPS SLIP ND +L+ +GM P K FTG+ P + VTT QK Sbjct: 13 IRKEFLSFFEKKGHKVLPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEATPPGKRVTTCQK 72 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R G D+DNVG+T+RH TFFEMLGNFSFG YFK+ I A++ LT ++++ L+ Sbjct: 73 CIRTG----DIDNVGKTDRHATFFEMLGNFSFGDYFKKEVIPWAYEFLTVNLEINKDDLW 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ 180 +TVY +D+EAF +WK G++ D+IIR+ DNFW + E GP GPC+EI+ D+G Sbjct: 129 VTVYKDDDEAFNIWKNDIGIAEDRIIRLGKEDNFWEL-EVGPSGPCTEIYVDRGLKYGSI 187 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + PGG EG+R+IE+WNLVF QF++ K L +IDTGMGLER+ATVLQ Sbjct: 188 DERPGG------EGDRFIEVWNLVFTQFDKDEKGNYTPLSHPNIDTGMGLERIATVLQGT 241 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID +I E+++G KY + V+ RVI DH+R+ +FL+ D + P+NEGRG Sbjct: 242 NNIFEIDAITEIINEIEKISGYKYGTDKKLDVSTRVITDHIRAITFLVGDTVRPSNEGRG 301 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + L + G Y EL++ I++ ++ E+E+F Sbjct: 302 YVLRRLIRRAARHGRLLGIKTTFLYELCDFIIKSWGENYKELVENSQRIKDVIKGEEEKF 361 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 T++ G+ +LD + L ++IL+G+ +FKLYDT+G P D+ ++IL +G +D+ Sbjct: 362 QMTIESGMNILDSYIEKLKSSNEKILSGEDSFKLYDTYGFPPDLTKEILTEKGFE-MDMD 420 Query: 417 SFNQALEEQRSRAR-AH---SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 FN +++Q+ RAR AH ++G S T E ++ K +F+GY+ ED Sbjct: 421 GFNDYMDKQKKRARNAHKDTNIGWDSHTDESVFTKFK-----NEFVGYE---------ED 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + CQ I I + V+ +K ++ D+TPFY E GGQ+GDTG Sbjct: 467 K---CQANII-----------GIFKDYNEVQNIGPEEKAVLILDKTPFYGEGGGQVGDTG 512 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 GD + ++ D +K EG+ +H V G + T+ ID R + NHS THL Sbjct: 513 YIDGDDFKCRVIDTKKTREGLHLHIVEVLDGEV-TKSPCFAEIDVVRRNNIRRNHSVTHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL ILG HV+Q GS + D LRFD TH + ++ E+K +ED VN I + L V T Sbjct: 572 LHKALKEILGDHVNQAGSLVEADRLRFDFTHYQAMSQEEIKKVEDRVNQKIFEALSVTTT 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + N + A GA L KY D VRV+S+ G +S LCGGTHV +T EI + I+S Sbjct: 632 VTNPKHAQELGAVGLFEEKYGDIVRVLSM-----GDYSIELCGGTHVRNTSEISMFKILS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 ES + +G+RRIE +TG L +A LK ++ +++ ++ E +KL Sbjct: 687 ESGVSSGVRRIEGVTGPAVYKMLNDTLNLRDEIAHELKANKTDILQKLSSSLNEIKKLNK 746 Query: 772 ----LIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 L H+ K +L N+ D K +N+++H + D L+ + D ++ K+ S +++ Sbjct: 747 AIDSLKHSSDKDELSNILDEVKEKNG-INYLTHKFKDKDVNSLRDIADMVRNKLNS-VVV 804 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L+ + K + + +++DL+ ++A + + +KV GGGGGGR MA +GG + K Sbjct: 805 LLATENDGKLNFVCALSKDLVSNGYSAGKIIKEVSKVC-GGGGGGRADMATAGGRDLGKV 863 Query: 886 DQAI 889 +A+ Sbjct: 864 SEAL 867 >gi|160892619|ref|ZP_02073409.1| hypothetical protein CLOL250_00149 [Clostridium sp. L2-50] gi|156865660|gb|EDO59091.1| hypothetical protein CLOL250_00149 [Clostridium sp. L2-50] Length = 888 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 360/913 (39%), Positives = 529/913 (57%), Gaps = 59/913 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SLIP ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNQLRKMFLEFFESKGHLKMNSFSLIPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LTK LD+ Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWSWEFLTKVVGLDEN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y++D+EAF +W K G++ +KI R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSIYEDDDEAFDIWNKEIGIAPEKIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + + +RY+E+WN VF QFE L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFENDGHNNYTELVQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L ++ G+KY + V+ RVI DH+RS +F+ +DGILP+NEGRGY Sbjct: 241 SIFDVDTIKALRDKVCEMAGVKYMEDEKTDVSIRVITDHIRSVTFMASDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + AYPEL + K I + +E+E F Sbjct: 301 VLRRLLRRAARHGRLLGIEGRFLAELSKTVIEVSKDAYPELEEKKAHIFTCINTEEENFN 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L+G + L ++LNG+ AFKLYDT+G PLD+ ++IL +G+ +D Sbjct: 361 KTIDQGLSILNGFVEELNNSGKKVLNGENAFKLYDTYGFPLDLTKEILEEKGIE-VDTEG 419 Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 FN+A+++QR AR ++ +G S E I +L K FIGYD + S Sbjct: 420 FNKAMDKQRETARKSRKVSNYMGADSTIYEDIDTALTSK-----FIGYDKVEASS----- 469 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ + V+S E+V+ G ++ +TPFYA GGQ+GD G Sbjct: 470 -NIIAITAEYKEGDQVTS---------ELVDVISEGTNGSIITAETPFYATMGGQIGDAG 519 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + R + D K A H VE G L+ + L++ R + NHSATHL Sbjct: 520 VIETESGRFIVKDTIKVAGDKIAHLGYVESGELKNGSTAKLSVTADRRALICKNHSATHL 579 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG HV Q GS ++ D LRFD TH + +T E+ +E VN+ I ++L V T Sbjct: 580 LQKALKMVLGDHVEQAGSYVSEDRLRFDFTHFQAMTPEEIAKVEAIVNEQIDKDLKVKTE 639 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ EDA +GA AL G KY ++VRVVS++ S CGGTHV +TG I I+S Sbjct: 640 VMSIEDAKKTGAMALFGDKYGEKVRVVSMDD-----FSVEFCGGTHVPNTGVIGTFKIIS 694 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E + AG+RRIEA+T A ++ +++LK+ A K + ++E + E + L Sbjct: 695 EMGVAAGVRRIEALTSVGAFNYYKEMEDELKAAAKAAKAEPAKLAEKIETMLAEIKALTS 754 Query: 773 IHAKRKLQLNVEDLSCHKIAD------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 ++K K +L ++ + +AD V ++ + + D L+++ D + K+ + +I+ Sbjct: 755 ENSKLKDKL-AKNSAGDALADAIDINGVKVLATSVEDTDMNALRNLGDDFKNKLGTSVIV 813 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L +K+ K +++ + T+D + + +A ++ + SA ++GGGGGG RP+MAQ+GG N Sbjct: 814 LAS-AKDGKVNLIAMATDDAVKKGAHAGNIIKASAALVGGGGGG-RPNMAQAGGKNP--- 868 Query: 886 DQAIAGVASFLKK 898 AG+A L K Sbjct: 869 ----AGIADALAK 877 >gi|168186831|ref|ZP_02621466.1| alanyl-tRNA synthetase [Clostridium botulinum C str. Eklund] gi|169295233|gb|EDS77366.1| alanyl-tRNA synthetase [Clostridium botulinum C str. Eklund] Length = 879 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 350/909 (38%), Positives = 533/909 (58%), Gaps = 54/909 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ GH LPS S++P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEM+GNFSFG YFK I AW+ T+ L + Sbjct: 66 CQKCIRTG----DIENVGKTSRHATFFEMMGNFSFGDYFKNEVIPWAWEFTTEVLKLPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQGE 181 +LY+T+Y +D+EA+ +W + + I R+ DNFW GPCGPCSEI F D GE Sbjct: 122 KLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDNGE 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + +R +E WNLVF QF++ L +IDTGMGLERMAT++Q Sbjct: 181 IKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQGVE 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +++D K ++ + +Y + I V+ R+I DH+RS S +I+D +LP+NEGRGY Sbjct: 241 TIFEVDTIKSILDKVATLANTEYGKDEIKDVSLRIITDHVRSVSVMISDEVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG + ++ ++ G AYPEL + K I++ + E+ERF Sbjct: 301 VLRRLLRRAARHGKLLGIKGTFLYKIVDSVIENSGEAYPELKEKKEYIKKVISIEEERFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D G+ +L + +L ++ ++L+G+ FKLYDT+G PL++ ++IL +G+ +D+ Sbjct: 361 ETIDSGMEILKQYIENLEENNQKVLSGEKVFKLYDTYGFPLELTEEILEEKGII-VDMDG 419 Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN+ ++EQR RARA S GT KI ++ + T F GY+ L Sbjct: 420 FNKEMKEQRERARAARSESTYMGTDVKILDTIPSEI-ETVFDGYENLE------------ 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + S VK I++ + V+ G+K +V ++TPFYAE GGQ+GD G Sbjct: 467 -----------LQSKVKIIIKDDDFVDCIKKGEKGIIVTERTPFYAEMGGQIGDRGTISA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG ++ D + G VH V G ++ E ++L +D + R + NHSATHLLH A Sbjct: 516 DGFIAKVQDCKNNIGGKIVHFVEVIEGNIKLEDEVLLEVDRRRRENVGKNHSATHLLHAA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ++G HV Q+GS + D LRFD TH + +T ELK +ED VN+ I VVT+ M+ Sbjct: 576 LRKVIGEHVHQSGSYVDEDKLRFDFTHFESLTDEELKEVEDLVNNTIENVYDVVTKEMSI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A SGA AL KY DRVRVV + G S+ LCGGTH+S+ G+I L IVSES I Sbjct: 636 EEARNSGAMALFDEKYGDRVRVVKM-----GEFSTELCGGTHISNVGKIGLFKIVSESGI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQL 772 AG RRIEA+TG +A + + + L+ +++ LK S+ +++ R+ E+ ++ +++ + Sbjct: 691 AAGTRRIEAVTGHKALEFIEHKSDLLRQISNMLKCSEKDIINRLNQQSAELKDKDKEISV 750 Query: 773 IHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 + K KL ED + +I VN + +VD + L+++ D ++ KI+SG+++L G Sbjct: 751 L--KSKLASGSEDDILKNVKEIKGVNLAVAALKDVDGEALRNLGDKIKNKIESGVVVL-G 807 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + + ++D + R + ++ R AK+ GGGGGGRP MAQ+GG K + A Sbjct: 808 SEVEGKVQFIAMASKDAVSRGVHCGNIVREIAKI-AGGGGGGRPDMAQAGGRLPEKLNDA 866 Query: 889 IAGVASFLK 897 I V + ++ Sbjct: 867 INEVENIME 875 >gi|238916897|ref|YP_002930414.1| alanyl-tRNA synthetase [Eubacterium eligens ATCC 27750] gi|238872257|gb|ACR71967.1| alanyl-tRNA synthetase [Eubacterium eligens ATCC 27750] Length = 880 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 347/902 (38%), Positives = 521/902 (57%), Gaps = 49/902 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R +L+FF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRRLYLDFFESKGHLKMKSFSLVPHNDNSLLIINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWSWEFLTETVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y +D+EAF +W K G++ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSIYQDDDEAFNIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + + +RY+E+WN VF QF L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D + L ++ G+KY+ + V+ RVI DH+RS +F+++DGI+P+NEGRGY Sbjct: 241 SIFDVDTLQALRNKVCEMAGVKYKEDEKQDVSIRVITDHIRSVTFMVSDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + + I + + E+++F Sbjct: 301 VLRRLLRRAARHGRLLGIEGKFLSKLCETVIEGSKDGYPELEEKRTFITKVISEEEDKFN 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L+ + + L + +L+G AFKLYDT+G P+D+ ++IL + + ID Sbjct: 361 KTIDQGLSILNDMEAELASKGENVLSGADAFKLYDTYGFPMDLTKEILEEKNIT-IDEAG 419 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN A+EEQR +AR A + G ++ + + F+GYD Sbjct: 420 FNAAMEEQRVKARNARKVTNYMGADATVYDEIDPAI-TSAFVGYD--------------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 LTN S + + + E+V+ G K V+ D+T FYA GGQ GD G Sbjct: 464 ------KLTN--ESEITVLTTEEEVVDALSEGDKGTVIVDETVFYATMGGQEGDKGVIKT 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + K G H + +G+++ + + + R NHSATHLL A Sbjct: 516 SEGEFAVETTIKLKGGKIGHVGTMTKGMMKVGDTATMEVSPAYRADTCKNHSATHLLQKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS + PD LRFD TH + +T E+ +ED VN+ IA+ +PVVT +M Sbjct: 576 LRIVLGDHVEQKGSYVDPDRLRFDFTHFQSMTKEEIAKVEDIVNEKIAEAIPVVTDVMTI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A +GA AL G KY ++VRVV++ G S CGGTHV++T I L IVSE+ + Sbjct: 636 EEAKKTGAMALFGEKYGEKVRVVAM-----GDFSKEFCGGTHVANTANIRLFKIVSEAGV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+T + + ++ ++ A K +V ++ + +E + L + K Sbjct: 691 AAGVRRIEALTDKGVIKYYAELEKTIEEAAKAAKAEPVQLVKKIAAMNDEIKSLMSENEK 750 Query: 777 RKLQL--NVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVGIS 831 K +L N + I +VN + +I ++VD EL+++ D L+ +I SG++++V Sbjct: 751 LKAELANNALGDTAGDIKEVNGVKYIATKVDGVDMNELRNLGDKLKGEIGSGVVVIVSAQ 810 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K SV+ + T+D++ + +A +L + A ++ GGGGGGRP+MAQ+GG N D+ IA Sbjct: 811 GADKVSVIAMATDDVIAKGAHAGNLIKALAPIV-GGGGGGRPNMAQAGGKNPAGIDELIA 869 Query: 891 GV 892 V Sbjct: 870 KV 871 >gi|70726302|ref|YP_253216.1| alanyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435] gi|83305859|sp|Q4L6W5|SYA_STAHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|68447026|dbj|BAE04610.1| alanyl-tRNA synthetase [Staphylococcus haemolyticus JCSC1435] Length = 876 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 339/920 (36%), Positives = 509/920 (55%), Gaps = 77/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPRKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI AW+ LT E ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIHFAWEFLTSENWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T++ ED EA+++W GL +IIRI N FW + E GP GP +EIF+D+G Sbjct: 123 EKLYVTIHPEDSEAYRIWNDEIGLEESRIIRIEGN--FWDIGE-GPSGPNTEIFYDRGDE 179 Query: 181 --------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 E PGG E ERY+E+WNLVF +F LP +IDTGMGLER Sbjct: 180 YGQDDPSEEMYPGG------ENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 MA+V Q NY+ DLF +I E+V KY NN + +VI DH+R+ +F IADG Sbjct: 234 MASVSQNVRTNYETDLFMPIINEVEKVADKKYLVNNEHDIAFKVIADHIRTIAFAIADGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ L EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLDINEPFMYKLVDIVAEIMEPYYPNVKEKADFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL GL +L+ +L+ + +NG AFKLYDT+G P+++ +++ Sbjct: 354 IKSEEERFHETLQEGLAILNNLLAKAKSSNNEINGSDAFKLYDTYGFPIELTEELASQEN 413 Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ++ +D+ +F + +++QR+RAR A ++ LK ++F+GY+ Sbjct: 414 IS-VDMATFEKEMDQQRTRAREARQSSQSMQIQSEV---LKNITTESKFVGYE------- 462 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T + + ++ GE VE A G+ V + +TPFYA +GGQ+ Sbjct: 463 ----------------TTDYQTTLTDLIYNGEKVESAEPGETVYFILKETPFYAVSGGQV 506 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + +++T+V K G +H +++ G + + +++ R+ + NHS Sbjct: 507 ADKGTVGNENFEIEVTEVTKAPNGQNLHQGVIQFGQVTINSDVDASVNRDERKDIQKNHS 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + + LRFD +H P+T E+ +E VN+ I + + Sbjct: 567 ATHLLHAALKEVLGEHVNQAGSLVESERLRFDFSHFGPMTQDEIDQVERRVNEEIWRGIS 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + M +A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 627 VNIQEMPINEAKQMGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVDNTAEIGLF 681 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767 I+SES AG+RRIEA TG+ A HL K S+ +KV N V ++ ++ EE Sbjct: 682 KIISESGTGAGVRRIEAFTGKSAFLHLEDIQNKFNSIKDQVKVKSDNQVFDKIVQLQEEE 741 Query: 768 RKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQK 818 + L +R ++ N+ED +I ++N + +EV+ +KE++ MD + Sbjct: 742 KNLHKQLEQRNKEITSLKMGNIED----QIEEINGFKVLATEVEVSNAKEIRQTMDDFKS 797 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K Q II+L E K S++ V ++ D+ A D+ + A ++ GG GGGRP MAQ G Sbjct: 798 KQQDAIIILASDLGE-KVSLIATVPKEQTDKIKAGDIIKNMAPLV-GGKGGGRPDMAQGG 855 Query: 879 GPNGNKADQAIAGVASFLKK 898 G +A+ + ++KK Sbjct: 856 GTQPENISEALRFIKDYIKK 875 >gi|56421091|ref|YP_148409.1| alanyl-tRNA synthetase [Geobacillus kaustophilus HTA426] gi|81557818|sp|Q5KWU5|SYA_GEOKA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|56380933|dbj|BAD76841.1| alanyl-tRNA synthetase [Geobacillus kaustophilus HTA426] Length = 887 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 360/924 (38%), Positives = 527/924 (57%), Gaps = 77/924 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FLEFFQ+ GH + PS+SLIP +DP+L++ NSG+ K F G+ P + V Sbjct: 7 AQVRRMFLEFFQEKGHAVEPSASLIPVDDPSLLWINSGVATLKKYFDGRIVPENPRICIV 66 Query: 65 ---------QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT Sbjct: 67 PENPRICNAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKREAIHWAWEFLT 122 Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 K D RL +TV+ EDEEA+ +W+ GL ++IIR+ NFW + E GP GP + Sbjct: 123 SDKWIGFDPERLSVTVHPEDEEAYNIWRNEIGLPEERIIRL--EGNFWDIGE-GPSGPNT 179 Query: 174 EIFFDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 EIF+D+GE G P E E +RY+E+WNLVF QF LPK +IDTGM Sbjct: 180 EIFYDRGEAF-GNDPNDPELYPGGENDRYLEVWNLVFSQFNHNPDGTYTPLPKKNIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 GLERM ++LQ+ N++ DLF +I+A+EQ+ G +Y + + V +VI DH+R+ +F I Sbjct: 239 GLERMCSILQDVPTNFETDLFLPIIRATEQIAGERYGEDPDKDVAFKVIADHIRAVTFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ YA+ +G P M L+P + M YPE+ + Sbjct: 299 GDGALPSNEGRGYVLRRLLRRAVRYAKHIGIDRPFMYELVPVVGEIMHDYYPEVKEKADF 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 I +R+E+ERF +TL GL +L V+ + +++ G+ AF+LYDT+G P+++ ++ Sbjct: 359 IARVIRTEEERFHETLHEGLAILAEVIEKAKEQGSDVIPGEEAFRLYDTYGFPIELTEEY 418 Query: 405 LCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 G+ AG + Q + +R S+ + G L + ++F+GY Sbjct: 419 AAEAGMTVDHAGFEREMERQRERARAARQDVDSMQVQGGV-------LGDIKDESRFVGY 471 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D L + S V AIV+ G +VEE +G++ +++ D TPF Sbjct: 472 DELVAA-----------------------STVIAIVKDGRLVEEVKAGEEAQIIVDVTPF 508 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+ D G + + DVQK G +H IVERG ++ +D R Sbjct: 509 YAESGGQIADQGVFESETGTAVVKDVQKAPNGQHLHAIIVERGTVKKGSRYTARVDEAKR 568 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 ++ NH+ATHLLH AL +LG HV+Q GS + PD LRFD TH + EL+ IE VN Sbjct: 569 MRIVKNHTATHLLHQALKDVLGRHVNQAGSLVAPDRLRFDFTHFGQVKPEELERIEAIVN 628 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 + I ++LPV E+A A GA AL G KY D VRVV V G +S LCGG HV Sbjct: 629 EQIWKSLPVDIFYKPLEEAKAMGAMALFGEKYGDIVRVVKV-----GDYSLELCGGCHVP 683 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +T I L IVSES I AG RRIEA+TG+ A + Q L+ A LK S + R+ Sbjct: 684 NTSAIGLFKIVSESGIGAGTRRIEAVTGEAAYRFMSEQLAILQEAAQKLKTSPKELNARL 743 Query: 761 EEIWEEYRKLQLIH---AKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMD 814 + ++ E ++L+ + A R + E L+ ++ DVN + + ++V D +L+++ D Sbjct: 744 DGLFAELKELERENESLAARLAHMEAEHLT-RQVKDVNGVPVLAAKVQANDMNQLRAMAD 802 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873 L++K+ + +I+L ++ K ++ VT+DL+ + F+A L + A GGGGGGRP Sbjct: 803 DLKQKLGTAVIVLAS-AQGGKVQLIAAVTDDLVKKGFHAGKLVKEVASRC-GGGGGGRPD 860 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 +AQ+GG + +K +A+ V +++K Sbjct: 861 LAQAGGKDPSKVGEALGYVETWVK 884 >gi|300814156|ref|ZP_07094439.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511813|gb|EFK39030.1| alanine--tRNA ligase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 874 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 350/904 (38%), Positives = 525/904 (58%), Gaps = 70/904 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+K GH++LPS SLIP ND +L+ +GM P K FTG+ P + VTT QK Sbjct: 13 IRKEFLSFFEKKGHKVLPSFSLIPKNDKSLLLIGAGMAPMKKFFTGEATPPGKRVTTCQK 72 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R G D+DNVG+T+RH TFFEMLGNFSFG YFK+ I A++ LT ++++ L+ Sbjct: 73 CIRTG----DIDNVGKTDRHATFFEMLGNFSFGDYFKKEVIPWAYEFLTVNLEINKDDLW 128 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ 180 +TVY +D+EAF +WK G++ D+IIR+ DNFW + E GP GPC+EI+ D+G Sbjct: 129 VTVYKDDDEAFNIWKNDIGIAEDRIIRLGKEDNFWEL-EVGPSGPCTEIYVDRGLKYGSI 187 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + PGG EG+R+IE+WNLVF QF++ K L +IDTGMGLER+ATVLQ Sbjct: 188 DERPGG------EGDRFIEVWNLVFTQFDKDEKGNYTPLSHPNIDTGMGLERIATVLQGT 241 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID +I E+++G KY + V+ RVI DH+R+ +FL+ D + P+NEGRG Sbjct: 242 NNIFEIDAITEIINEIEKISGYKYGTDKKLDVSTRVITDHIRAITFLVGDTVRPSNEGRG 301 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + + L + G Y EL++ I++ ++ E+E+F Sbjct: 302 YVLRRLIRRAARHGRLLGIKKTFLYELCDFIIKSWGENYKELVENSQRIKDVIKGEEEKF 361 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 T++ G+ +LD + L ++IL+G+ +FKLYDT+G P D+ ++IL +G +D+ Sbjct: 362 QMTIESGMNILDSYIEKLKSSNEKILSGEDSFKLYDTYGFPPDLTKEILTEKGFE-MDMD 420 Query: 417 SFNQALEEQRSRAR-AH---SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 FN +++Q+ RAR AH ++G S T E ++ K +F+GY+ ED Sbjct: 421 GFNDYMDKQKKRARNAHKDTNIGWDSHTDESVFTKFK-----NEFVGYE---------ED 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + CQ I I K + I E +K ++ D+TPFY E GGQ+GDTG Sbjct: 467 K---CQANII-------GIFKDYTEVQNIGPE----EKAVLILDKTPFYGEGGGQVGDTG 512 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 GD + ++ D +K EG+ +H V G + T+ ID R + NHS THL Sbjct: 513 YIDGDDFKCRVIDTKKTREGLHLHIVEVLDGEV-TKGPCFAEIDVVRRNNIRRNHSVTHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LH AL ILG HV+Q GS + D LRFD TH + ++ E+K +E+ VN I + L V T Sbjct: 572 LHKALKEILGDHVNQAGSLVEADRLRFDFTHYQAMSQEEIKKVEERVNQKIFEALSVTTT 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + N + A GA L KY D VRV+S+ G +S LCGGTHV +T EI + I+S Sbjct: 632 VTNPKHAQELGAVGLFEEKYGDIVRVLSM-----GDYSIELCGGTHVRNTSEISMFKILS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 ES + +G+RRIE +TG L +A LK ++ +++ ++ E +KL Sbjct: 687 ESGVSSGVRRIEGVTGPAVYKMLNDTLNLRDEIAHELKANKTDILQKISSSLNEIKKLNK 746 Query: 772 ----LIHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 L H+ K +L N+ D K +N+++H + D L+ + D ++ K+ S +++ Sbjct: 747 AIDSLKHSSDKDELSNILDEVKEKNG-INYLTHKFKDKDVNSLRDIADMVRNKLNS-VVV 804 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L+ + K + + +++DL+ ++A + + +KV GGGGGGR MA +GG + K Sbjct: 805 LLATENDGKLNFVCALSKDLVSNGYSAGKIIKEVSKVC-GGGGGGRADMATAGGRDLGKV 863 Query: 886 DQAI 889 +A+ Sbjct: 864 SEAL 867 >gi|307243232|ref|ZP_07525403.1| alanine--tRNA ligase [Peptostreptococcus stomatis DSM 17678] gi|306493360|gb|EFM65342.1| alanine--tRNA ligase [Peptostreptococcus stomatis DSM 17678] Length = 878 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 341/908 (37%), Positives = 523/908 (57%), Gaps = 67/908 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR+ F +FF+ H + S SLIP ND +L+ NSGM P KN F+G E P ++T Sbjct: 6 LNEIRSRFTKFFESKEHYIAKSHSLIPSNDKSLLLINSGMAPLKNYFSGVEIPPKNRMST 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 VQKC+R G D++NVG T RH TFFEM+GNFSFG YFK+ AI AW+ +T ++ + Sbjct: 66 VQKCIRTG----DIENVGVTARHATFFEMMGNFSFGDYFKKEAIAWAWEFITVWLEIPEE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181 +L++TVY+ D+EA+ LWK + G +KI+R+ +DNFW + GPCGPCSEI+FD+GE Sbjct: 122 KLWVTVYESDDEAYNLWKDMIGFPEEKIVRLGKDDNFWEIG-LGPCGPCSEIYFDKGEKY 180 Query: 182 ------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 C PG + +R++E WNLVF QF+++ L +IDTGMGLERMA Sbjct: 181 GCGCEDCKPGC------DCDRFLEFWNLVFTQFDRKEDGSYGELDHKNIDTGMGLERMAC 234 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 V+QE +++D + ++ Q+ G+ Y + + R+I DH+RS +F++ DGILP+ Sbjct: 235 VMQEVDTIFEVDTIRSVLNRVCQLAGITYGQDAKKDKSVRIITDHIRSVAFMVGDGILPS 294 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA + RLLG + + ++ + G AYPELI+ I++ + Sbjct: 295 NEGRGYVLRRLLRRAARHGRLLGIKDNFLNEIVEVVFDTCGQAYPELIEKNDYIKKVIGI 354 Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E+FG+TL++GL +L L G + ++G+ AFKLYDT G PLD+ +IL GL Sbjct: 355 EEEKFGETLEQGLEILKSYTEDLVAGGGDTISGEQAFKLYDTFGFPLDLTMEILEDEGLK 414 Query: 412 GIDIISFNQALEEQRSRARAHSLGL-GSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFM 469 +D F + ++ Q+ RARA G E SL++ ++ F GY +L++ Sbjct: 415 -VDTEGFEKEMQAQKDRARAARGNTEGDAWKEDPLTSLED--ASSSFDGYHNLVK----- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +S +KA+V +V+ G + ++ D+T FY GGQ+G Sbjct: 467 -------------------ASTIKAMVADNALVDTLEEGLEAAIILDETSFYPNGGGQVG 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + D ++ D K A G H + G L + +D R + NH+A Sbjct: 508 DKGQILSDTGLFEVEDTVKGANGSIKHIGRIVSGSLTKGEKVETRVDKALRMDAARNHTA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + P LRFD+TH + +T E+ +E VN+ I + PV Sbjct: 568 THLLHKALKEVLGDHVNQAGSLVEPYRLRFDITHFEAMTKEEISRVEAMVNEFILEAHPV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 +MN +A A GA AL G KY + VRVV + G S LCGGTH+ +T ++ + Sbjct: 628 TAELMNINEARAMGAMALFGEKYGEEVRVVKM-----GDCSVELCGGTHLDNTSQVGMFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IVSE + AG+RRIEAITG+ +++ +D + +++ +K + N+V R + +E ++ Sbjct: 683 IVSEGGVAAGVRRIEAITGRAVYQYMLAKDSLINNISDIMKTREDNLVVRANSLVDENKQ 742 Query: 770 LQL-IHA-KRKLQL----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L+ +H K K+ + N D S I V ++ ++D L+ V D L+ K+ + Sbjct: 743 LEKEVHDLKSKISMQNAGNALDDSLD-IKGVKLLTAKYEDMDIDTLREVADNLRDKLGTS 801 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L I+ + K + + ++D +D+ +A ++ R AK+ GG GGGRP+MAQ+GG + Sbjct: 802 VVVLANIAGD-KINFVATASKDAIDKGAHAGNIVREVAKI-AGGKGGGRPNMAQAGGSDK 859 Query: 883 NKADQAIA 890 DQA+A Sbjct: 860 TMVDQALA 867 >gi|323692006|ref|ZP_08106254.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14673] gi|323503929|gb|EGB19743.1| alanine-tRNA ligase [Clostridium symbiosum WAL-14673] Length = 879 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 347/906 (38%), Positives = 507/906 (55%), Gaps = 53/906 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P VTT Sbjct: 6 VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRNRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY ED+EAF +W K G+ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLEDDEAFDIWNKEMGIPKERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RYIE+WN VF QF L +IDTGMGLER+A V+QE Sbjct: 181 GCGSPDCTVGCECDRYIEVWNNVFTQFNNDGHGNYTELEHKNIDTGMGLERLAVVVQEVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + + +D K L+ ++ KY+ ++ V+ R++ DH++S +F+I+DGI+P+NEGRGY Sbjct: 241 SLFTVDTNKALLDRVCELAHTKYQEDHETDVSLRIVADHIKSCTFMISDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + + LG M L + YPEL + +I + L E+++F Sbjct: 301 VLRRLLRRAARHGKKLGIEGKFMAELSKTVIALSKDGYPELEEKSAMIFKVLSEEEDKFN 360 Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + + K+ +L+GD AFKLYDT+G P+D+ ++IL + L+ +D Sbjct: 361 KTIDQGLAILADMETEMAKNNETVLSGDNAFKLYDTYGFPIDLTREILEEKNLS-LDEDG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F A+++Q+ +ARA + + + T+F GY K +E Sbjct: 420 FTAAMKKQKEQARAARKTTNYMGADVTVYQSIDPAVTTEFDGY-----GKLAEE------ 468 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 S + + + EIVE GQ ++ +TPFYA GGQ D G Sbjct: 469 ------------SEITVLTTETEIVEALTDGQAGTIIVKKTPFYATMGGQQADVGVITAQ 516 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + D K G H V +G+ +T ++ L +D +NR NHSATHLLH AL Sbjct: 517 DAEFTVKDTIKLQGGKVGHVGYVTKGMFKTGDTVTLKVDKENRELTERNHSATHLLHKAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 T+LG+HV Q GS +T D LRFD TH +T E+ ++E VND IA LPV T +M + Sbjct: 577 RTVLGTHVEQAGSLVTKDRLRFDFTHFSAMTDEEIAAVEKLVNDEIAAALPVETMVMTLD 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY D VRVV + G S+ LCGGTHV +T I IVSE+ I Sbjct: 637 EAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVDNTSSISAFKIVSEAGIA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA+T ++ +++L A +K + + ++E + +E + L + K Sbjct: 692 AGVRRIEALTSTGLMNYYKEMEKELHEAARVVKSTPSGLTAKLESMLDEIKALHSENEKL 751 Query: 778 KLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + L ++ V ++ + +VD L+++ D L++K+ G++++ + Sbjct: 752 KSKLANDSLGDVMNQVQEVNGVKLLAVQVKDVDMNGLRNLGDQLKEKLGEGVVVIASVQD 811 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 K + V E +A +L + A ++GGGGGG RP+MAQ+GG N AG+ Sbjct: 812 GKVNLMASVTGEAQKKGAHAGNLIKAIAGLVGGGGGG-RPNMAQAGGKNP-------AGI 863 Query: 893 ASFLKK 898 LKK Sbjct: 864 PDALKK 869 >gi|330839006|ref|YP_004413586.1| alanyl-tRNA synthetase [Selenomonas sputigena ATCC 35185] gi|329746770|gb|AEC00127.1| alanyl-tRNA synthetase [Selenomonas sputigena ATCC 35185] Length = 874 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 350/901 (38%), Positives = 525/901 (58%), Gaps = 61/901 (6%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L+FF +K GH LPS+SLIP NDPTL+ +GM PFK FTG+ KP +TT Sbjct: 7 NELREAYLQFFAEKKGHLRLPSASLIPANDPTLLMIGAGMAPFKPFFTGKMKPPRTRITT 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVR G D++NVGRT RH T+FEMLGNFSFG YFK+ AI AW+ LT DL + Sbjct: 67 SQRCVRTG----DIENVGRTARHQTYFEMLGNFSFGDYFKKEAIPWAWEFLTDVLDLPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TVY +D+EA +W++ G D I+++ +DNFW + GPCGP SEI+ D GE Sbjct: 123 KLWVTVYPKDDEAAAIWREQPGFPQDHIVKL--DDNFWEIG-PGPCGPDSEIYIDLGEER 179 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + + +RY+EIWNLVF QF++ + L +IDTG GLER+A+VLQ K Sbjct: 180 GCGSPDCAVGCDCDRYLEIWNLVFTQFDRTEDGQYNPLEHKNIDTGCGLERLASVLQNKK 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL +I+ + +V+G+ Y G N V+ +VI DH RS + +I DGILP+NEGRG Sbjct: 240 TNFETDLLFPIIEYASKVSGVVY-GENAEKDVSLKVIADHARSMAIMIMDGILPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDE 356 YVLRRI+RRA+ + R+LG + + + A+ A + EL + K I++ + E++ Sbjct: 299 YVLRRILRRAVRHGRILGIHDKFLEGAIDAVAEIYKGAADFEELAEKKEYIKKVISIEED 358 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF TL +G+ LL+G + L ++ ++L G++ FKLYDT+G P ++ +IL + +D Sbjct: 359 RFAATLAQGMELLNGHIEDLKREGKKVLPGEIGFKLYDTYGFPWEVTDEILHENEME-LD 417 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 SF +A+EEQR RARA Q + L G D Sbjct: 418 KDSFEKAMEEQRERARAAR-------------------QENQRVAVPDLSGI-----DTS 453 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 LC +D N S V AI + G +V+E G++ ++ TPFYAE GGQ+GD G Sbjct: 454 HLC----VD-ENAKESTVVAIWKDGVLVDELADGEEAGIILQSTPFYAEGGGQVGDAGLL 508 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + R+Q+ + +K +G H VE G+L+ + + ID+ + + NH+ATHLL Sbjct: 509 ETEFGRVQVANAKKLPDGTVYHIGYVEEGMLKVGDHVSIRIDWMKKLSSARNHTATHLLQ 568 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G V+Q GS + P+ LRFD ++ +P+T+ +L+ +E VN+ I PV M Sbjct: 569 AALKRVVGDQVNQAGSLVMPERLRFDFSNFEPVTALQLQEVERLVNEQILMAKPVEIAQM 628 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A GA AL G KY D VRVVSV S LCGG+HV + GEI + IVSE+ Sbjct: 629 EIDKAKKLGAMALFGEKYGDVVRVVSVPD-----FSIELCGGSHVKNIGEIGMFKIVSET 683 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I +G+RRIEA+TG+ A ++ + E L + A K +V +E E +KL+ Sbjct: 684 GIASGVRRIEALTGRAAIDYMNEKAETLAAAAHAFKCRDDEIVSHIESTLAENKKLKQEI 743 Query: 775 A---KRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K + +V+ L K I D++F S I+ + +L+ + D L +++SG+++L Sbjct: 744 ASFTKERAMGDVDTLLAQKKQIKDLSFASGIVEADNIDDLRKIADMLLDRLESGVVVLAA 803 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + E K S++ ++ + + +A ++ + +AK++ GGGGGGR MAQ+GG K +A Sbjct: 804 -AHEGKVSLVAKASDAAVAKGAHAGNIVKAAAKIV-GGGGGGRKEMAQAGGKEPAKMPEA 861 Query: 889 I 889 + Sbjct: 862 L 862 >gi|289432002|ref|YP_003461875.1| alanyl-tRNA synthetase [Dehalococcoides sp. GT] gi|288945722|gb|ADC73419.1| alanyl-tRNA synthetase [Dehalococcoides sp. GT] Length = 876 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 344/903 (38%), Positives = 530/903 (58%), Gaps = 51/903 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK + G KP + + QK Sbjct: 12 LRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGMAKPENPRMASCQK 71 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C R D+++VG + H T FEMLGNFS G YFK+ AI AW+ +T+ ++ RL+ Sbjct: 72 CFRT----TDIESVGDAS-HLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNIPAERLW 126 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGE---C 182 ITVY +D+EA LWK+ G+ ++I+R+ DNFW A ++GPCGPCSE+ +D G+ C Sbjct: 127 ITVYLDDDEAIALWKE-QGVPENRIVRLDAADNFWGPAGDSGPCGPCSEVHYDFGQETGC 185 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 S + G R+ EIWNLVF+QF Q +R LP SIDTGMGLER+ ++Q K N Sbjct: 186 GKADCNPSCKCG-RFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTILMQSKKN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ D+F +++ + ++G KY + + R++ +H R +FLIADG++P GRGYV Sbjct: 245 VYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDKAGRGYV 304 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RRA+ + R LG +P ++ + A+ T M YPEL + + + E + SE+ RF + Sbjct: 305 LRRLLRRAVLFGRRLGLEKPFLVDMAGAVITRMSGIYPELKKRQTYVLEMIASEEARFSE 364 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL GL LL+ ++ K ++G AFKLYDT+G P+++ +I +GL+ +D+ F Sbjct: 365 TLATGLELLEEIVRQT-KGGRISGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VDLDGFES 422 Query: 421 ALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +E QR++AR+ + T + +++ G T F+GY+L R QK Sbjct: 423 EMEVQRTKARSSRKFSFDAAATAEAVKNMRHG-GKTCFVGYELAR-------------QK 468 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S + I+ +G V+ G + +V D++PFYAE GGQ+GDTG I G Sbjct: 469 ----------STIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDTGEIITGGG 518 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 R ++ + G+F+H V G L+ + I+ + RR ++ NH+ATH+L AL Sbjct: 519 RFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHILQTALRE 578 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG V Q GS +TPD LRFD +H KP++ E++ +E+ VND I +NLPV M A Sbjct: 579 VLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEEMAYRHA 638 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 + G AL G KY DRVRV+ V S+ LCGGTHV+++GEI L I+SESS+ AG Sbjct: 639 LEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSESSVGAG 695 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKR 777 +RRIEA+TG+ A + + Q + L L+ L+ + ++ E+ EE L+ + + +R Sbjct: 696 LRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKAVQNLER 755 Query: 778 KLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 ++ + K D V + ++ V++ L+ D L+ K+ SG+I+L G E Sbjct: 756 QMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL-GTVTED 814 Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K L +VT DL+ + ++A ++ + +++ GGGGGG+P+MAQ GG + +K D+A+ V Sbjct: 815 KPFFLCMVTPDLIAKGYHAGNIVKKLSQI-AGGGGGGKPNMAQGGGRDKSKLDEALQAVK 873 Query: 894 SFL 896 + Sbjct: 874 GMI 876 >gi|260887236|ref|ZP_05898499.1| alanine--tRNA ligase [Selenomonas sputigena ATCC 35185] gi|260863298|gb|EEX77798.1| alanine--tRNA ligase [Selenomonas sputigena ATCC 35185] Length = 871 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 350/901 (38%), Positives = 525/901 (58%), Gaps = 61/901 (6%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L+FF +K GH LPS+SLIP NDPTL+ +GM PFK FTG+ KP +TT Sbjct: 4 NELREAYLQFFAEKKGHLRLPSASLIPANDPTLLMIGAGMAPFKPFFTGKMKPPRTRITT 63 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVR G D++NVGRT RH T+FEMLGNFSFG YFK+ AI AW+ LT DL + Sbjct: 64 SQRCVRTG----DIENVGRTARHQTYFEMLGNFSFGDYFKKEAIPWAWEFLTDVLDLPKE 119 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TVY +D+EA +W++ G D I+++ +DNFW + GPCGP SEI+ D GE Sbjct: 120 KLWVTVYPKDDEAAAIWREQPGFPQDHIVKL--DDNFWEIG-PGPCGPDSEIYIDLGEER 176 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + + +RY+EIWNLVF QF++ + L +IDTG GLER+A+VLQ K Sbjct: 177 GCGSPDCAVGCDCDRYLEIWNLVFTQFDRTEDGQYNPLEHKNIDTGCGLERLASVLQNKK 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL +I+ + +V+G+ Y G N V+ +VI DH RS + +I DGILP+NEGRG Sbjct: 237 TNFETDLLFPIIEYASKVSGVVY-GENAEKDVSLKVIADHARSMAIMIMDGILPSNEGRG 295 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDE 356 YVLRRI+RRA+ + R+LG + + + A+ A + EL + K I++ + E++ Sbjct: 296 YVLRRILRRAVRHGRILGIHDKFLEGAIDAVAEIYKGAADFEELAEKKEYIKKVISIEED 355 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF TL +G+ LL+G + L ++ ++L G++ FKLYDT+G P ++ +IL + +D Sbjct: 356 RFAATLAQGMELLNGHIEDLKREGKKVLPGEIGFKLYDTYGFPWEVTDEILHENEME-LD 414 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 SF +A+EEQR RARA Q + L G D Sbjct: 415 KDSFEKAMEEQRERARAAR-------------------QENQRVAVPDLSGI-----DTS 450 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 LC +D N S V AI + G +V+E G++ ++ TPFYAE GGQ+GD G Sbjct: 451 HLC----VD-ENAKESTVVAIWKDGVLVDELADGEEAGIILQSTPFYAEGGGQVGDAGLL 505 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + R+Q+ + +K +G H VE G+L+ + + ID+ + + NH+ATHLL Sbjct: 506 ETEFGRVQVANAKKLPDGTVYHIGYVEEGMLKVGDHVSIRIDWMKKLSSARNHTATHLLQ 565 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G V+Q GS + P+ LRFD ++ +P+T+ +L+ +E VN+ I PV M Sbjct: 566 AALKRVVGDQVNQAGSLVMPERLRFDFSNFEPVTALQLQEVERLVNEQILMAKPVEIAQM 625 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A GA AL G KY D VRVVSV S LCGG+HV + GEI + IVSE+ Sbjct: 626 EIDKAKKLGAMALFGEKYGDVVRVVSVPD-----FSIELCGGSHVKNIGEIGMFKIVSET 680 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I +G+RRIEA+TG+ A ++ + E L + A K +V +E E +KL+ Sbjct: 681 GIASGVRRIEALTGRAAIDYMNEKAETLAAAAHAFKCRDDEIVSHIESTLAENKKLKQEI 740 Query: 775 A---KRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 A K + +V+ L K I D++F S I+ + +L+ + D L +++SG+++L Sbjct: 741 ASFTKERAMGDVDTLLAQKKQIKDLSFASGIVEADNIDDLRKIADMLLDRLESGVVVLAA 800 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + E K S++ ++ + + +A ++ + +AK++ GGGGGGR MAQ+GG K +A Sbjct: 801 -AHEGKVSLVAKASDAAVAKGAHAGNIVKAAAKIV-GGGGGGRKEMAQAGGKEPAKMPEA 858 Query: 889 I 889 + Sbjct: 859 L 859 >gi|330443884|ref|YP_004376870.1| alanyl-tRNA synthetase [Chlamydophila pecorum E58] gi|328806994|gb|AEB41167.1| alanyl-tRNA synthetase [Chlamydophila pecorum E58] Length = 874 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 331/886 (37%), Positives = 492/886 (55%), Gaps = 57/886 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 +SN+ +R+ FL F+ H+++PSS + P DP+++FTN+GM FKNIF +E Y Sbjct: 2 LSNL--LRSKFLNFYANRHHKIIPSSPVFPHQDPSILFTNAGMNQFKNIFLNKETVSYSR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TT QKC+RAGGKHNDL+NVG T+RH TFFEMLGNFSFG YFK A AW+ F+ Sbjct: 60 ATTSQKCIRAGGKHNDLENVGHTSRHLTFFEMLGNFSFGDYFKADATTFAWEASLSVFNF 119 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +Y TV+++D+EAF LW++ L ++I R+T DNFWSMA+TGPCG CSE+ FD+G Sbjct: 120 APEFIYATVHEKDDEAFALWERY--LPTERIFRLTDKDNFWSMADTGPCGYCSELLFDRG 177 Query: 181 ECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 P EGER++E WNLVFM+F + + + LP +DTG GLER+ +++ Sbjct: 178 PKFGSASSPLEDIEGERFLEYWNLVFMEFNRTAEGDLLSLPNKHVDTGAGLERLISLISG 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 ++ D+ + LI EQ++G Y + + RVI DH+RS SF IADG+LP N R Sbjct: 238 TNTVFEADVLRMLIGKIEQLSGKTYCPDSPHGAAFRVIADHIRSLSFAIADGLLPGNTER 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLR+I+RRA+ Y R LG+ +P + ++P+L MG AYPEL + I+E L +E+E Sbjct: 298 GYVLRKILRRAVNYGRRLGFQQPFLAEIVPSLADAMGEAYPELRLSLTQIQEVLSNEEEC 357 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA-GIDII 416 F KTL RG LL VL +++G+ AFKL DT+GLP+D + L A+ +D+ Sbjct: 358 FLKTLHRGGNLLQQVLKASSSSSVISGEDAFKLKDTYGLPID--EIFLLAKDYNFQVDME 415 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 +F +E + R+R HS+ + ++ L E + +FIGYD L F Sbjct: 416 TFALLEQEAKERSRKHSVKTQE-EVKVVYEQLPEL--SVEFIGYDTLSCDTF-------- 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 ++AI+ Q +IV G++ ++ TPFYAE GGQ+GD+G Sbjct: 465 ---------------IEAIISQDQIVSSLQEGEEGILILKTTPFYAEKGGQVGDSGEIFS 509 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++ G HH + +G L ++ ++ R++++ NH+ HLLHHA Sbjct: 510 QEGSFIVSHTTTPQAGFIAHHGKMSQGKLSQAEAVTTQVNCIRRKKIANNHTGCHLLHHA 569 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L+++LG+H+ Q GS + +R D T+ K I +L SIE VND+I +N PV+TR Sbjct: 570 LASVLGNHIRQAGSYVDETKIRLDFTYPKAIAPEDLASIESLVNDLIRENHPVLTRETLY 629 Query: 657 EDAIASGA-AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 D + S G KY D VRVVS GV S LCGGTH +TG++ IV E + Sbjct: 630 SDVMNSKEIKQFFGDKYGDTVRVVS-----AGV-SHELCGGTHAQATGDLGYFRIVKEHA 683 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----- 770 I GIRRIEAITG+ A + + + L A L+ + ++ ++ E+ +K Sbjct: 684 IATGIRRIEAITGEEAEAASRQERKLLDEAALLLQAPKDQLLAKLTHALEQRKKQDKVIS 743 Query: 771 ----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +LI A+ +N H +++++ + ++E + L+ + +K+ I Sbjct: 744 DLENKLISAQLDELINQR----HSSHEISYLVYHLAEKEGHHLQQYANCFHQKLPQRSIS 799 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 L K +K VL ++EDL + F A +L + GG GG + Sbjct: 800 LWITKKNRKYIVLSRISEDLAAQGFQAQELLKAILAPYGGRWGGAK 845 >gi|163790359|ref|ZP_02184791.1| alanyl-tRNA synthetase [Carnobacterium sp. AT7] gi|159874430|gb|EDP68502.1| alanyl-tRNA synthetase [Carnobacterium sp. AT7] Length = 882 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 360/920 (39%), Positives = 531/920 (57%), Gaps = 72/920 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF+ GH++ PS+SL+P DPTL++ NSG+ K F G P +T Sbjct: 7 NEVRQLFLDFFESKGHKVEPSASLVPFEDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFKE AI+ AW+ LT+E LD Sbjct: 67 QKSIRT----NDIENVGKTARHHTLFEMLGNFSIGEYFKEEAIEWAWEFLTEEKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY ED +A +WK+ GL+ D II + DNFW + GP GP SEIF+D+GE Sbjct: 123 EKLYVTVYPEDTDAKMIWKEKIGLTDDHIIDVA--DNFWDIG-AGPSGPDSEIFYDRGEA 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ER++EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FNDLAENDPENYPGG--ENERWLEIWNLVFSEFNHKRDGTYEPLPNKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292 +LQ+ N++ DLF +I+ + ++G+K G N ++ +VI DH+R+ SF I DG LP Sbjct: 238 ILQDAPTNFETDLFMPIIEKVQALSGIKKYGENATDDISFKVIADHVRAVSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG + M L+P + M S YPE+++ + I + ++ Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGIDKAFMFKLVPVVGNIMNSHYPEILEQEEFIVKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ERF +T++ GL +L+ +S L G+ I D+ FKLYDT+G P+++ ++ G Sbjct: 358 NEEERFHETINDGLTILNERISELKVNGEKTIAGSDI-FKLYDTYGFPVELTEEFAQDEG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 +D F + QR RARA G S G K++ L ++ + F+GY+ Sbjct: 417 FE-VDHEGFEIEMTAQRDRARAARSGEKSMGIQTKLFAGLNDE---SLFVGYN------- 465 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 I+ I +V A +G++V ++FDQTPFYAE GGQ+ Sbjct: 466 ----------------KTTAMGILAVIATDEALVTTAKTGEQVRLIFDQTPFYAEMGGQI 509 Query: 529 GDTGCAIGD---GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D G I D I ++TDV+K G +H V + E + L +D R +++ Sbjct: 510 ADKGI-IKDTTGKIVAKVTDVKKAPAGQPLHTVEVLESLTVGE-TYKLEVDETLRNKITR 567 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL ILG H +Q GS +T + LRFD TH IT EL +E VN+ I + Sbjct: 568 NHTATHLLHQALKDILGEHANQAGSLVTQNHLRFDFTHFGQITQKELNEMEQIVNEKIWE 627 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +LPVVT A GA AL G KY D VRVV+V G +S LCGG HVS+T EI Sbjct: 628 SLPVVTVETEIAKAKEMGAMALFGEKYGDLVRVVNV-----GDYSIELCGGVHVSNTSEI 682 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIW 764 + I+SES I AG+RRIEA+T + A + L + ++L ++A +K Q +VV +V+++ Sbjct: 683 GIFKIISESGIGAGVRRIEAVTSEAAYNLLQTEQKRLNAVADLVKAQQTQDVVTKVQQLQ 742 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKK 819 E ++LQ + + +L + + +VN ++ + +EV D +L+ + D ++K Sbjct: 743 TELKELQKENESLQAKLASDQAGDIFKNVQEVNGITVVSAEVDVNDMNQLRQLADQWKQK 802 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S ++ L G SK+ K ++L V + + + F A DL + A ++ GGGGGGRP MAQ+G Sbjct: 803 AVSNVLTL-GFSKDGKVNLLTAVDDATIKKGFKAGDLIKTIAPLV-GGGGGGRPDMAQAG 860 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A+A V ++ + Sbjct: 861 GKNPAGLQDALAKVTEWVNE 880 >gi|289450565|ref|YP_003475604.1| alanine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185112|gb|ADC91537.1| alanine--tRNA ligase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 886 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 350/904 (38%), Positives = 515/904 (56%), Gaps = 47/904 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+ GH LPS SL+P DP+++ N+GM P K F G E P + VTT Sbjct: 6 LNEIREKYLSFFESKGHLRLPSFSLVPQKDPSILLINAGMTPLKPYFIGTEVPPCKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++ VG T+RH TFFEMLGNFSFG YFK AI AW+ +T+ L + Sbjct: 66 CQKCIRT----PDIERVGYTSRHGTFFEMLGNFSFGDYFKAEAISWAWEFITEVLKLPEE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLYITVY +D+EA+ W + G++ +KI R+ DNFW TGPCGPCSEI FD+G + Sbjct: 122 RLYITVYKDDDEAYDYWHQKIGVAENKIYRLGKEDNFWEHG-TGPCGPCSEIHFDRGPNV 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +R++E WNLVF QF++Q + +IDTG GLER A ++Q Sbjct: 181 GCGRPDCHVGCDCDRFVEFWNLVFSQFDRQEDGTYLPMVHKNIDTGGGLERFACIMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D + ++ A ++ + Y +++ V RVI DH+RS++ +I+DG+LP+NEGRGY Sbjct: 241 NLFEVDTVRRILDAVCKIAKVHYGNDHMADVAIRVITDHIRSTTMMISDGVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA Y RLLG + LLP + E AYPEL + + I + +E++RF Sbjct: 301 VLRRLLRRAARYGRLLGIDGLFLHDLLPVVVQESCGAYPELKEREDYILRVIETEEKRFD 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+ +G LLDG ++ K L+GDV FKL+DT+G PLD+ ++I +G++ +D Sbjct: 361 KTVKQGSQLLDGYINEAKKAGSGELSGDVVFKLHDTYGFPLDLTREIAAEQGIS-VDEAG 419 Query: 418 FNQALEEQRSRARAH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + ++ Q+ ARA GS + E TQF+GY S+F + + Sbjct: 420 FKKNMQRQKDEARAALKAKGGSAWAAGCLPAEVEHKNPTQFVGY-----SEFSAKGK--- 471 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF--DQTPFYAEAGGQLGDTGCA 534 L +SS + GE + ++G +V+ D+TPFYA GGQ+GD G Sbjct: 472 -------LLYIISSD-----EAGEPILLPMAGVDADVILITDRTPFYATGGGQVGDIGTI 519 Query: 535 IGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+ G+++++ D K AEGIF+HH V G L M L L ++ R + NHSATHLL Sbjct: 520 TGEHGLKVEVKDTTKTAEGIFLHHCHVIAGSLEPGMELDLAVNRPVRMDIMRNHSATHLL 579 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL T+LG+HV+Q GS + + LRFD H KP T+ EL+ IE VN I N VT + Sbjct: 580 HKALRTVLGTHVTQAGSLVNAEHLRFDFHHMKPCTAEELRQIEAEVNRAILANYQSVTEV 639 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M +A GA AL KY D VRVVS+ G +S CGGTH+S T ++ + +IVSE Sbjct: 640 MPMAEAKKKGAMALFDEKYGDMVRVVSM-----GDYSVEFCGGTHLSETSQVGIFHIVSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE----EYRK 769 S+ +GIRRIEAITG A L + A LK+ ++ R+ ++ E +K Sbjct: 695 GSVASGIRRIEAITGSAALRWLQDLQKTTAEAADMLKIKVADLPERIAQLQNDLKAETKK 754 Query: 770 LQLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 Q + ++ K Q + A +N+++ +S +L+++ ++L+ ++ ++L Sbjct: 755 FQALQSELAKAQAAELKNKAREAAGINYLAAAVSVDGVDDLRAMAESLRSQLAPAAVVLG 814 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 K V + E + A +L + +A + GGGGGGRP MAQ+GG + K +A Sbjct: 815 AEINGKLNFVAMASPEAVKKGVKAGNLVKAAASI-SGGGGGGRPDMAQAGGKDVAKLPEA 873 Query: 889 IAGV 892 +A Sbjct: 874 LAAA 877 >gi|294102019|ref|YP_003553877.1| alanyl-tRNA synthetase [Aminobacterium colombiense DSM 12261] gi|293616999|gb|ADE57153.1| alanyl-tRNA synthetase [Aminobacterium colombiense DSM 12261] Length = 881 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 349/911 (38%), Positives = 519/911 (56%), Gaps = 61/911 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+ F++F++ G + PS SLIP NDP+L+FT +GMVPFK + G ++P + T QK Sbjct: 9 IRSLFIDFWESKGSKHYPSFSLIP-NDPSLLFTIAGMVPFKPYYLGIQQPEFTRAVTSQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR ND++NVGRT RHHTFFEMLGNFS+G YFK+ AI W+ LT+ L+ RLY Sbjct: 68 CVRT----NDIENVGRTARHHTFFEMLGNFSWGDYFKKEAITWGWEFLTEVIGLEPERLY 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y +DEEA+ +W+ GL +KI R ++NFW M TGPCGPCSEI +DQG G Sbjct: 124 ATIYKDDEEAYSVWRNEVGLPENKIYRFDKDENFWFMGNTGPCGPCSEIIYDQGPEFSCG 183 Query: 187 LPGSSEEG---ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P + + G +RY+EIWNLVF QF+ Q LPK +IDTGMGLER+ +++Q + Sbjct: 184 KP-TCDVGCNCDRYLEIWNLVFTQFDLQEDGTLVPLPKKNIDTGMGLERLTSIVQRVRTD 242 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ DLFK LI +TG+ Y + N RVI DH+RS +F+IADGILPAN+GRGYVL Sbjct: 243 FETDLFKPLIDHICAMTGVTYGSSPSHNLAVRVIADHIRSVAFMIADGILPANDGRGYVL 302 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RRA Y +L+G P ++ L P + M Y EL+ + +IE+ + E++RFG+T Sbjct: 303 RRLIRRAARYGKLIGLDRPFLLELFPDVLDLMADPYRELLDNRPMIEQIVSMEEKRFGRT 362 Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L +G L++ +S L + L+G +AF+LYDT+G PL++ +I CA +D F+ Sbjct: 363 LQQGTELIEQEISRLRLRHVDALSGTIAFELYDTYGFPLELTTEI-CAENDIKVDEAGFH 421 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +E+QR RARA S L S ++ + + G T F GY L Sbjct: 422 VEMEKQRERARASSKQLSSEMKGDVYSQIAAEKGQTSFEGYVL----------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 + + + V A+++ G+ V+ G+ E V +PFYAE GG++GD G G+ Sbjct: 465 ------SELDTEVVALIKDGQPVDFLSEGESGEAVLKVSPFYAERGGEIGDQGLLSAAGV 518 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ +TD + + VH V G+L +++ ++D + R + NH+ATHLLH ALS Sbjct: 519 KVCVTDTTSETADLIVHRVTVLEGVLTEGLAVHASVDKEKRESIRRNHTATHLLHEALSQ 578 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHV Q GS + LRFD TH + +T ++ ++ED VN I +N+P+ T + E A Sbjct: 579 VLGSHVRQAGSLVNEALLRFDFTHFESMTREQIAAVEDMVNRQILKNIPLETIESDLEQA 638 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA AL KY D VRVV ++ S+ LCGG HV +TG+I I+ E I +G Sbjct: 639 REMGAKALFDEKYGDIVRVVRIKD-----FSTELCGGLHVDATGDIGAFKIIKEEGIGSG 693 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 RRI A+TG A ++ L + L ++ +V VE + E + L ++ Sbjct: 694 TRRITALTGLNAFRAFQNSFRVVEDLCNVLTLTTDELVSHVENMQAEIKGL----GRKID 749 Query: 780 QLNVEDLSCHKIADVNFMSHIISE-----------VDSKELKSVMDALQKKIQSGIIMLV 828 +L + +L+ D + I+S V + L+ + D ++ K ++ +I+L Sbjct: 750 ELKLNNLAA--AIDESVKKEILSNGTSIFQGSFKGVSADMLRELCDRIKVKNKNIVIVLA 807 Query: 829 G-ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 IS+E V + E + +A + + A +L GGGGGG+P +AQ+GG K D+ Sbjct: 808 SQISEENVLIVAMADDEAMKAGAHAGKIVKEVAVIL-GGGGGGKPAIAQAGGKKPEKIDE 866 Query: 888 AIAGVASFLKK 898 A + ++K Sbjct: 867 AFHALRGIVEK 877 >gi|160891225|ref|ZP_02072228.1| hypothetical protein BACUNI_03673 [Bacteroides uniformis ATCC 8492] gi|317481112|ref|ZP_07940189.1| tRNA synthetase class II [Bacteroides sp. 4_1_36] gi|156859446|gb|EDO52877.1| hypothetical protein BACUNI_03673 [Bacteroides uniformis ATCC 8492] gi|316902713|gb|EFV24590.1| tRNA synthetase class II [Bacteroides sp. 4_1_36] Length = 872 Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust. Identities = 347/927 (37%), Positives = 520/927 (56%), Gaps = 96/927 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSAEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PGS +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G KY + + + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGKKYGEDEKSDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG+AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGAAYPELDAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LI + ++ E++ F +TL+ G+ LL+ ++ GK+EI +G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKAAGKNEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ DI F+ +++Q+ RAR ++ + +G W +LKE G T+F+GY Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAIETGD----WITLKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + + Q+ + + ++V D+TPF Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDKTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVVDT-KKENNLPIH--ITKKLPEHMEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695 I N+P+ R + E+A GA AL G KY D VRV+ SVE+ CG Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGSSVEF----------CG 666 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS--- 752 GTHV++TG I ++ I+SESS+ AG+RRIEA TG R + ++ L L + + Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEELMNTIEDTLHDLKALFNNAPDL 726 Query: 753 QGNVVGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 G + ++E E++ K + K +L NV++++ K+ + F + + +E Sbjct: 727 AGTIRKYIDENAGLKKQVEDFMKEKEAQLKERLLKNVQEVNGVKV--IKFCAPLPAET-- 782 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865 +K++ L+ +I + + G E K + ++++++L+ A +L + +AK++ Sbjct: 783 --VKNIAFQLRGQITENLFFVAGTEAEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+PH A +GG N + + AI V Sbjct: 840 GGGGGQPHFATAGGKNADGLNAAIDKV 866 >gi|314936266|ref|ZP_07843613.1| alanine--tRNA ligase [Staphylococcus hominis subsp. hominis C80] gi|313654885|gb|EFS18630.1| alanine--tRNA ligase [Staphylococcus hominis subsp. hominis C80] Length = 876 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 341/919 (37%), Positives = 511/919 (55%), Gaps = 77/919 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SDIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA++LW + GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 EKLYVTIHPEDVEAYRLWHENIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF ++ LP +IDTGMGLER Sbjct: 180 YGQNDPAEEMYPGG------ENERYLEVWNLVFSEYNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I+ E ++G KY NN V +VI DH+R+ SF I+DG Sbjct: 234 MTSISQNVRTNYETDLFMPIIEEVEHISGKKYLENNEQDVAFKVIADHIRTISFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKSDFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL G+ +L+ +++ + +NG AFKLYDT+G P+++ +++ G Sbjct: 354 IKSEEERFHETLQEGVSILNQLITQAKESTHQINGSDAFKLYDTYGFPIELTEELASQEG 413 Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D+ +F +E+QR+RAR A + ++ K +QF+GY+ Sbjct: 414 IT-VDMATFEAEMEQQRTRAREARQSSQSMQVQSDVLKNINTK---SQFVGYE------- 462 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T +I+ ++ G+ V A +G+ V + +TPFYA +GGQ+ Sbjct: 463 ----------------TTDYQTILTDLIYNGKTVTSAEAGETVYFILKETPFYAVSGGQV 506 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G D + + +V K G +H IV+ G + + T++ + R+ + NHS Sbjct: 507 ADKGTVGNDQFEIAVQEVTKAPNGQNLHQGIVQFGQVSVNSHVDATVNKEERKDIQKNHS 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL ILG HV+Q GS + + LRFD +H P+T E+ +E VN+ I + + Sbjct: 567 ATHLLHAALKEILGEHVNQAGSLVESERLRFDFSHFGPMTKEEIDQVERRVNEEIWRGIS 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + M ++A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 627 VHIQEMPIQEAKEMGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVDNTAEIGLF 681 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767 IVSES AG+RRIEA+TG+ A + K S+ LKV S V +V +I E Sbjct: 682 KIVSESGTGAGVRRIEALTGKAAFLYFEDIQNKFNSVKEQLKVKSDKQVYDKVVQIQENE 741 Query: 768 RKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQK 818 ++L +R ++ N+ED ++ +N + +EV+ KE++ MD + Sbjct: 742 KQLNKQLEQRNKEITSLKMGNIED----QVEMINGFKVLATEVEVSNPKEIRQTMDDFKS 797 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K Q II+L G E K S++ V ++L + A D+ + A ++ GG GGGRP MAQ G Sbjct: 798 KKQDTIIILAGHVGE-KVSLIAAVPKELTSQVKAGDIIKNMAPIV-GGKGGGRPDMAQGG 855 Query: 879 GPNGNKADQAIAGVASFLK 897 G +++ + ++K Sbjct: 856 GTQPENISESLRFIKDYIK 874 >gi|328957192|ref|YP_004374578.1| alanine--tRNA ligase [Carnobacterium sp. 17-4] gi|328673516|gb|AEB29562.1| alanine--tRNA ligase [Carnobacterium sp. 17-4] Length = 882 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 362/925 (39%), Positives = 535/925 (57%), Gaps = 74/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF+ GH++ PS+SL+P DPTL++ NSG+ K F G P Sbjct: 1 MKKLSSNEVRQLFLDFFESKGHKVEPSASLVPFEDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFKE AI+ AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTLFEMLGNFSIGEYFKEEAIEWAWEFLTEDK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LD +LY+TVY ED EA +WK+ GL+ D I+ + DNFW + GP GP SEIF Sbjct: 117 WLGLDPEKLYVTVYPEDTEAKNIWKEKIGLTDDHIVDVA--DNFWDIG-AGPSGPDSEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+GE P PG E ER++EIWNLVF +F + LP +IDTGMG Sbjct: 174 YDRGEAFNDLPENDPENYPGG--ENERWLEIWNLVFSEFNHKPDGTYEPLPNKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286 LER+ ++LQ+ N++ DLF +I+ E ++ K G N ++ +VI DH+R+ SF I Sbjct: 232 LERVVSILQDAPTNFETDLFMPIIKKVESLSKTKKYGENPTDDISFKVIADHVRAVSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG E M L+P + + M S YPE+++ + Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIDEAFMYKLVPIVGSIMDSFYPEILEQEDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 I + +++E+ERF +T++ GL +L+ ++ L G+ I D+ FKLYDT+G P+++ ++ Sbjct: 352 IVKVIKNEEERFHETINDGLTILNERITELKAKGETSIAGSDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462 G +D F + + QR RARA G S G +++ LKE+ + F+GY+ Sbjct: 411 YAEDEGFK-VDHEGFEKEMTAQRDRARAARSGEKSMGVQTRLFSDLKEE---SLFVGYN- 465 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 ++ I E++ A G++V ++FDQTPFYA Sbjct: 466 ----------------------KTTEMGTLEVIATDEELLNSAQPGERVRLIFDQTPFYA 503 Query: 523 EAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVER-GILRTEMSLVLTIDYQN 579 E GGQ+ D G +L ++ +V+K G +H IVE +L + VL +D Sbjct: 504 EMGGQVADKGVVTDTKGKLIAKVVEVKKAPAGQPLH--IVEVVEVLTVGETYVLEVDKSL 561 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R +++ NH+ATHLLH AL ILG H +Q GS +TP+ LRFD TH +T EL +E V Sbjct: 562 RNKITRNHTATHLLHQALKDILGEHANQAGSLVTPNHLRFDFTHFGQVTRDELDQMEQIV 621 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ I +++ VVT + A GA AL G KY D VRVV+V G +S LCGG HV Sbjct: 622 NEKIWESISVVTVETDIAKAKEMGAMALFGEKYGDLVRVVNV-----GDYSIELCGGVHV 676 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVG 758 S+T EI + IVSES I AG+RRIEA+T + A + L + ++L +A+ +K Q +V+ Sbjct: 677 SNTSEIGIFKIVSESGIGAGVRRIEAVTSEAAYTLLQTEQKRLIEVAAVVKAQQTQDVIT 736 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELKSVM 813 +V+++ E ++ Q + + +L + I +VN ++ + +EVD K +L+ + Sbjct: 737 KVQQLQTELKEAQKENESLQAKLANDQAGDIFKNIQEVNGVTIVSAEVDVKDMNQLRQLA 796 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872 D ++ S ++ L G S + K ++L V D + + F A DL + A ++ GGGGGGRP Sbjct: 797 DQWKQNAVSNVLAL-GFSNDGKVNLLTAVDADTIKKGFKAGDLIKTIAPLV-GGGGGGRP 854 Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897 MAQ+GG N A+A VA ++K Sbjct: 855 DMAQAGGKNPAGLSDALAKVAEWVK 879 >gi|260438422|ref|ZP_05792238.1| alanine--tRNA ligase [Butyrivibrio crossotus DSM 2876] gi|292809008|gb|EFF68213.1| alanine--tRNA ligase [Butyrivibrio crossotus DSM 2876] Length = 884 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 344/900 (38%), Positives = 515/900 (57%), Gaps = 62/900 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P + VTT Sbjct: 6 VNELRRKYLEFFESKGHLKMNSFSLVPQNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D+DNVG+T RH TFFEMLGNFSFG YFK AI +W+ LTK +++ Sbjct: 66 CQKCIRTG----DIDNVGKTARHLTFFEMLGNFSFGDYFKHEAINWSWEFLTKVIGMEED 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-----DNFWSMAETGPCGPCSEIFFD 178 RLY ++Y +D+EAF +W K G+ A++I R + DNFW GPCGPCSEI++D Sbjct: 122 RLYPSIYADDDEAFNIWTKEVGVPAERITRFYRDENGDCDNFWEHG-AGPCGPCSEIYYD 180 Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +G G P + +R++E+WN VF QFE L + +IDTGMGLER+A V Sbjct: 181 RGIKYGCGKPDCKVGCDCDRFMEVWNNVFTQFESDGHHHYTELKQKNIDTGMGLERLAVV 240 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +DID K + ++ G+ Y + + V+ R+I DH+RS +F+ +DGI+P+N Sbjct: 241 VQDVDSVFDIDTMKAIRDKICELAGVTYMEDEHKDVSIRLITDHIRSVTFMASDGIIPSN 300 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA + R LG + L + YPEL + + LI + L +E Sbjct: 301 EGRGYVLRRLLRRAARHGRTLGIDGLFLAKLATTVIDSSKDGYPELDEKRELILKVLTTE 360 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E F KT+D+GLV+L + S L K+ L+G+ AF+LYDT+G P+D+ +IL +G Sbjct: 361 EENFNKTIDQGLVILSDLESRLVKEGKTCLDGEDAFRLYDTYGFPIDLTNEILEEKGFT- 419 Query: 413 IDIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +D+ FN A+ +Q+ AR + +G + +KI + ++F+GYD L Sbjct: 420 VDMDGFNNAMNKQKETARGARKETNYMGADATVYDKIDTRI-----TSEFVGYDTLE--- 471 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S + + +I + G + ++ ++TPFYA GGQ Sbjct: 472 --------------------TESEITVLTTSEDITDTLAEGMEGTIIVNKTPFYATMGGQ 511 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG I +G ++ D + G H V G + + LT+D + R + NH Sbjct: 512 QGDTGVIICNGSVFEVIDTIRLKGGRVGHVGKVTAGSFKVGDKVTLTVDEKKRIDTAKNH 571 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLL AL +LG+HV Q GS +TPD LRFD TH +P+T E++ +E VN+ I +++ Sbjct: 572 SATHLLQEALRIVLGNHVEQAGSLVTPDRLRFDFTHFQPMTEEEIEKVEAIVNEQIEKSI 631 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T+++ EDA +GA AL KY D VRVV + G S CGGTHVS+TG I Sbjct: 632 DVETKVLAIEDAKKTGAKALFNEKYGDTVRVVCM-----GDFSKEFCGGTHVSNTGLINS 686 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSES + AG+RRIEA+TG ++ ++K + K + NV ++ + E Sbjct: 687 FKIVSESGVAAGVRRIEALTGNGVFAYYKDIEKKYNDICKAAKATPANVEEKIAHMQAEI 746 Query: 768 RKLQLIHAKRKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQS 822 + L K + E L ++ DVN F++ +++VD EL+++ D L+ KI S Sbjct: 747 KSLNSEIESLKNKAANEALGDVLNQAEDVNGVKFLAVKLNDVDMNELRNLSDDLKSKIGS 806 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+++L K ++++ T+D++ +A ++ + +A + GGGGGGRP+MAQ+GG N Sbjct: 807 GVVVLASAMGSDKVNLIVTATDDIVKAGVHAGNIIKSAAPCV-GGGGGGRPNMAQAGGKN 865 >gi|81299685|ref|YP_399893.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 7942] gi|81168566|gb|ABB56906.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 7942] Length = 899 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 358/904 (39%), Positives = 521/904 (57%), Gaps = 56/904 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR TFL+FF+ GH LPS+SLIP DPT++ T +GM+PFK IF GQ+ TT QK Sbjct: 34 IRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRATTSQK 92 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F + RL Sbjct: 93 CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPAERLA 148 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPG 185 ++V++ED+EAF +W+ G+ +I R+ DNFW+ TGPCGPCSEI++D E Sbjct: 149 VSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPELGND 208 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 GL E+ R+IE++NLVFMQ+ + L K +IDTGMGLERMA VLQ NNY+ Sbjct: 209 GL--DLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPNNYE 266 Query: 246 IDLFKHLIQASEQVTGMKY--EGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DL +IQA + Y E ++ V+ +VI DHLR+ + LIADG+ +N GRGYVLR Sbjct: 267 TDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGYVLR 326 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RR + + RL+G P + M + YP L + + I+ L E++RF +TL Sbjct: 327 RLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFLETL 386 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RG LL L D+I G+ AF LYDT+G PL++ Q+I +GL +D+ F A+ Sbjct: 387 ERGEKLLA-ELLAAATDQI-RGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFEAAM 443 Query: 423 EEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKVLCQK 479 QR R++A ++ L T + L E+ T+F+GY D + +K Sbjct: 444 AAQRQRSQAAHETIDL---TVQGSLDRLAEQIHPTEFVGYGDAVATAK------------ 488 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G G+ + Sbjct: 489 ------------VTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 536 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DVQK++ G FVH+ +ERG+L+ S+ ID RR+ NH+ATHLL AL Sbjct: 537 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 595 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T EL+ IED +N IA+ V +M A Sbjct: 596 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 655 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY VRV+ V GV S LCGGTHV++T EI L I+SE+ + +G Sbjct: 656 KAKGAVAMFGEKYGAEVRVIDVP----GV-SMELCGGTHVANTAEIGLFKIISEAGVASG 710 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777 +RRIEA+ G +L +D ++ L+ K + RV + EE + + QL K Sbjct: 711 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 770 Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKE 833 +L + D + + D + ++ VD+ L++ + LQ+K+ +G ++L +E Sbjct: 771 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 830 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K +++ ++ + + GGGGGGRP++AQ+GG + +K +AIA Sbjct: 831 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGGGRPNLAQAGGRDASKLPEAIAAAL 890 Query: 894 SFLK 897 LK Sbjct: 891 DQLK 894 >gi|319760313|ref|YP_004124251.1| alanyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF] gi|318039027|gb|ADV33577.1| alanyl-tRNA synthetase [Candidatus Blochmannia vafer str. BVAF] Length = 884 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 348/919 (37%), Positives = 516/919 (56%), Gaps = 67/919 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL FF K H+++ SSSLIP ND TL+FTNSGM FKNIF G EK +++ V T Sbjct: 5 IVDVRQEFLNFFHKKEHQIISSSSLIPENDQTLLFTNSGMNQFKNIFLGIEKVLFKRVVT 64 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 Q+C+RAGGKHNDL+NVG T RH TFFEMLGNFSFG YFK+ AI+ AW+LLT F L Sbjct: 65 AQRCMRAGGKHNDLNNVGYTERHLTFFEMLGNFSFGDYFKDSAIEFAWELLTDSNWFALS 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCSE 174 + +++IT + D E++ +W K G+S ++I+I + +DNFW M GPCGPCSE Sbjct: 125 KDKIWITTHICDNESYDIWTKHIGISKKRVIKIGSKNGHYSDSDNFWKMGNIGPCGPCSE 184 Query: 175 IFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 IF+D G+ PG P + + ERY+EIWNLVFMQF Q++ LP +S+DTGMGLER Sbjct: 185 IFYDLGDKFPGVPPNNDMTASSERYVEIWNLVFMQFNQRSNGNLESLPMLSVDTGMGLER 244 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR--VIVDHLRSSSFLIADGI 290 + +LQ +NY ID+FK+LI + +V +K +I + VI DH+R+ +FLI DGI Sbjct: 245 ITAILQGMCSNYLIDVFKNLIISISEVMNVK---KSIADRSLYVIADHIRACAFLIKDGI 301 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P NEGRGYVLRRI+RRA+C+ R LG L+ L + M L LIE+ Sbjct: 302 IPDNEGRGYVLRRIIRRAVCHGRKLGVNGIFFYKLVTPLISSMSYITEILCDQVDLIEKI 361 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 L +E++ F TL++GL LL L L ++IL+G VAF+LY T+G PLD+ QDI C Sbjct: 362 LFNEEKLFENTLNKGLKLLRKSLIELKNNKILSGRVAFQLYSTYGFPLDLTQDI-CHEYN 420 Query: 411 AGIDIISFNQAL--EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID + F+Q + E+++S+ + T I S + F+GY K Sbjct: 421 IKIDQLEFDQIMLKEKKQSKQLNRFCRVSGDITIPIDIS-------SIFVGY------KH 467 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + K++ A+ Q E V+ S + V+ D TPFY E+GGQ+ Sbjct: 468 VTYRAKII-----------------ALFQNNEAVKIVKSNTESMVILDFTPFYGESGGQI 510 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G + + KK I V I++ G + + ++ R+ + +NHS Sbjct: 511 GDCGYLRAESGGVFEVRNTKKYGNITVQIGILKSGKINVGEEVFAQVNPLKRKLICLNHS 570 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL ILGSHV+Q GS I LRFD +H +T ++ S+E+ +N I N Sbjct: 571 ATHLLHAALLEILGSHVTQKGSLINDRCLRFDFSHYDAMTEKQINSVENFINQQIWSNWV 630 Query: 649 VVTRIMNREDAIASGAAALLGTK-YNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + +M E A + +L K YN VRVV + G SS LC GTH +TG+I L Sbjct: 631 ITEDLMPIESAYNNTDIIMLSKKQYNQEVRVVRI-----GNFSSELCTGTHSKNTGKIGL 685 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IV E I AGIRRIEA T A S + + ++++ + +++ ++ + Sbjct: 686 FVIVKELGIGAGIRRIEATTKDLALSIIQRKRTLIQNIIQIMHTDDDHLLNKIHALKLFS 745 Query: 768 RKLQ----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV---MDALQKKI 820 KL+ ++ K++ Q + S H++ + + ++ ++++ EL++V + +++ + Sbjct: 746 NKLEKEIRVLKNKQETQKILS--SAHEVYYIKNVPILVKQIENIELETVFYMVGCIKRHL 803 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +SG+I+L+ +++ VTEDL++R N++D+ + GG GGG+ AQ+ Sbjct: 804 KSGLIVLINTRINNSIHLIVSVTEDLIERNHINSLDVVHYIMHNV-GGKGGGKSDFAQAK 862 Query: 879 GPNGNKADQAIAGVASFLK 897 N + +A V L+ Sbjct: 863 IDNVINKSEFVANVKLLLR 881 >gi|119356090|ref|YP_910734.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266] gi|205830021|sp|A1BD33|SYA_CHLPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119353439|gb|ABL64310.1| alanyl-tRNA synthetase [Chlorobium phaeobacteroides DSM 266] Length = 888 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 347/931 (37%), Positives = 520/931 (55%), Gaps = 84/931 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM FK++F + Y Sbjct: 2 NSREIRQSFLDFFDRKGHTIVRSAPVIPLDDPTLLFTNAGMNQFKDVFLDKGTRPYVRAA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT + L + Sbjct: 62 DTQKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLTSVWHLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY TVY +DEE++ LW++ + + D II+ DNFW M ETGPCGPCSEI D E Sbjct: 122 ERLYATVYYDDEESYLLWQEETDIPHDHIIKFDEKDNFWEMGETGPCGPCSEIHIDLTED 181 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + R IE+WNLVF+Q+ +Q LP+ +DTGMG ER+ V+Q K + Sbjct: 182 -GSGKPLVNAGDYRVIELWNLVFIQYNRQADGRLEPLPQKHVDTGMGFERVCAVMQGKAS 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NYD D+F+ L ++TG+ Y + + + RV+ DH R+ +F + DG +P+NEGRG Sbjct: 241 NYDTDVFRPLFDRITEITGVSYNASLDDPSDIAMRVLADHARTLTFALTDGAMPSNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ Y++ LG +EPL+ L+ L MG +PEL + + + +R+E+E F Sbjct: 301 YVLRRILRRALRYSKTLGCSEPLLYRLVETLAASMGDVFPELRKQQQAVSRIIRAEEESF 360 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 TLDRG+ + + +++ + +++GD AF+LYDT G PLD+ + ++ A +D Sbjct: 361 LATLDRGIEIFNELIAAVRSRGTTVVSGDDAFRLYDTFGFPLDLTR-LMAAEAGFEVDEE 419 Query: 417 SFNQALEEQRSRARAHSLG---LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F++ ++EQ++RAR L E WFS + + F GY L Sbjct: 420 GFDRCMKEQKTRARQDRRDKQHLKGDEGEWTWFSAER---TSVFTGYHSLE--------- 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + GVS + ++ VV D+TPFYAE+GGQ GD G Sbjct: 468 -------ELASITGVS----------------IFSDRLLVVLDRTPFYAESGGQCGDRGW 504 Query: 534 AIGDGIRLQITDVQKKAEGIF-----VHHAIVERGILRTEMSL-------VLTIDYQNRR 581 RL+++D +K + I V ++ + I ++S ++D +R+ Sbjct: 505 IETAAYRLRVSDTRKDGDMIVHLVTEVRDSVSDGAISPADLSFDEGKLACRASVDRSDRQ 564 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 NH+ATHLLH AL LG HV Q GS ++ + LRFD +H +TS EL +E VN+ Sbjct: 565 GTERNHTATHLLHAALRRTLGQHVQQKGSFVSSERLRFDFSHFARLTSEELAIVESEVNE 624 Query: 642 IIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I PVV + + ++AIA GA A G KY DRVRVV + G+ S LCGGTHV Sbjct: 625 QIRSAEPVVKHQDIPYDEAIARGALAFFGDKYADRVRVVEI----AGL-SVELCGGTHVD 679 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGR 759 S G+I L IVSESS+ +G+RRIEA+TG+ A L + +L+ + LK+ + V+GR Sbjct: 680 SIGQIGLFKIVSESSVASGVRRIEALTGKAAEVLLWKEYRELQDIRQMLKLKADEEVIGR 739 Query: 760 VEEIWEEYRKLQLIHAKRKLQL-NVEDLS---------CHKIADVNFMSHIISEVDSKEL 809 + E+ + ++L+ ++LQ+ E LS + + FM+ + VD L Sbjct: 740 IAELADSKKELE-----KQLQVYRTEALSGILQRSLDAAESVGSIRFMTLRLEHVDQDSL 794 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGG 867 + + AL++K + +L ++ K S+ E + F +A L R +A + GG Sbjct: 795 RQAVLALREKDPASTGLLC-TEEDGKVSLTAFAGERAVGEFGLDAGKLVREAAAFV-RGG 852 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGG+P A +GG + +A A+ +++ Sbjct: 853 GGGKPEFATAGGKDPEGIQKAFDSFAASVRE 883 >gi|257055557|ref|YP_003133389.1| alanyl-tRNA synthetase [Saccharomonospora viridis DSM 43017] gi|256585429|gb|ACU96562.1| alanyl-tRNA synthetase [Saccharomonospora viridis DSM 43017] Length = 888 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 341/907 (37%), Positives = 511/907 (56%), Gaps = 59/907 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I FL++F+++GH +PS+SLI +DPTL+F N+GMV FK F G+ P Y T+VQK Sbjct: 6 INKRFLDYFERHGHTKVPSASLI-LDDPTLLFVNAGMVQFKPYFLGEVPPPYPRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 CVR G D+D VG+T RH+TFF+M GNFSFG YFK+ AI+LAW+ +T D L+ Sbjct: 65 CVRTG----DIDEVGKTTRHNTFFQMAGNFSFGDYFKQGAIELAWEFITTSQDEGGLGLN 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ TVY+ D EA LW+ ++GL +++I +DN+W M GPCGPCSEI++D+G Sbjct: 121 PDRLWATVYEHDAEAAALWRDVAGLPSERIQFRGPDDNYWDMGVPGPCGPCSEIYYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQ------FEQQNKQERFILPKMSIDTGMGLERMAT 235 G G + +RY+EIWNLVFMQ +Q LP+ +IDTGMG+ER+A Sbjct: 181 EY-GREGGPVVDEDRYLEIWNLVFMQEMRGELSPKQGHAPIGELPQKNIDTGMGVERVAY 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293 +LQ N Y+ DL + +I +E+ +G +Y ++ V RVI DH RS LIADG+ P Sbjct: 240 LLQGVENVYETDLVRPVITKAEEFSGRRYGADHADDVRFRVIADHARSGVMLIADGVTPG 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NE RGYVLRR++RR + RLLG EP++ + M +YPE+ + I + +R+ Sbjct: 300 NEARGYVLRRLLRRIVRSVRLLGVHEPVLPEFAAVVRDAMAPSYPEIARDFDRISDVMRA 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E F TL G + D + IL+GD AF+L+DT+G P+D+ ++ +GL+ Sbjct: 360 EEEAFLATLTSGSRIFDLAAQETKRAGGTILSGDKAFQLHDTYGFPIDLTLEMAAEQGLS 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F +E+QR RA+A + +G + ++ L E++G T+F+GY L+ Sbjct: 420 -VDEEGFRTLMEQQRQRAKADAASRKTGHGDLSVYRKLLEEHGETEFLGYTDLQ------ 472 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 ++ V ++ G+ V A G E+V D+TPFYAE GGQ+ D Sbjct: 473 -----------------ATARVLGLLVDGKPVRSASEGSVAELVLDRTPFYAEGGGQIAD 515 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG IG+G L++ DVQ+ G+FVH V G + + L ++D R ++ +HSAT Sbjct: 516 TGVLIGEGAELKVLDVQRLVPGLFVHRVEVVAGEVGVDTQLTASVDGTRRASIARSHSAT 575 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H A+ G+ +Q GS TP +RFD T K ++ L +E+ VND + ++ V Sbjct: 576 HLVHAAVRGAYGNRAAQAGSLNTPGRMRFDFTTPKSVSDDVLTEVEEEVNDYLQTDVEVQ 635 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 ++ A+ GA AL G KY DRVRVV D G +S LCGGTHV G++ L+ + Sbjct: 636 AYTTTKDRALELGAIALFGEKYGDRVRVV-----DMGDYSRELCGGTHVERIGQLGLVKL 690 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 VS+SS+ +G+ R+EA+ G A H+ + + LAS LKV V R++++ R Sbjct: 691 VSDSSVGSGVHRVEALVGTDALRHVRKEQLLVSQLASTLKVPADEVPSRIQDVLTRLRNA 750 Query: 771 QLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS-- 822 + + +L+ + S +IA V+ ++ + EVD+ L+ + ++ ++ S Sbjct: 751 EKEIEQLRLREVLNSASTLAERAREIAGVSVVAERLDQEVDAGALRKLTGEVRNRLGSRP 810 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G++ L S E K S ++ T + D A + L GG GGG+P MAQ GG Sbjct: 811 GVVALFAPSGEGKVSFVVATTAEARDAGLAAGKLVPAFAELVGGRGGGKPDMAQGGGSRP 870 Query: 883 NKADQAI 889 +QAI Sbjct: 871 EGVEQAI 877 >gi|294628346|ref|ZP_06706906.1| alanyl-tRNA synthetase [Streptomyces sp. e14] gi|292831679|gb|EFF90028.1| alanyl-tRNA synthetase [Streptomyces sp. e14] Length = 890 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 352/923 (38%), Positives = 520/923 (56%), Gaps = 80/923 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + T+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT D Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSPQDKGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL+ITVY +D+EA ++W ++ G+ ++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LDPERLWITVYKDDDEAEQIWHEVVGVPKERIQRLGMKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E + ++ F LP +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTGKDNFEILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ID +I+ + ++TG+ Y + V+ RV+ DH+R+++ LI DG+ Sbjct: 238 AMILQGVQNMYEIDTSMAVIKKATELTGVAYGDAHASDVSLRVVTDHMRTATMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE+ Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVRDLIDVVVNMMGQQYPELVTDRERIEKVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G +LD ++ + ++L+GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEENAFLKTLKAGTNILDTAVTETKQSGGKVLSGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A + +G + + + + G T FIGY Sbjct: 418 LS-VDEEGFRRLMKEQRERAKADAQAKKTGHADLGAYREIADTAGETDFIGY-------- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T G S+IV +V G A G +VEVV D+TPFYAE GGQ+ Sbjct: 469 --------------TDTEGESTIVGLLV-DGVSSPAATEGDEVEVVLDRTPFYAEGGGQI 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG + G ++I D QK G++VH +V+ G + +ID + R+ ++ H Sbjct: 514 GDTGRIKVDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAHASIDGRRRKAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + +A + +E +N+++A++L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLARDL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVHAEVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIK-------GRPEELPEKV 741 Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812 ++++ A++ LQ K DV ++ + +V +L+ + Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAAGLAESAK--DVRGVALVTGQVPDGTTPDDLRKL 799 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869 + ++ +IQ G +V + L V+ + R A DL R +AK L GGGGG Sbjct: 800 VLDVRGRIQGGRAAVVALFTVNNGKPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGG 858 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+P +AQ GG N +A+ V Sbjct: 859 GKPDVAQGGGQNPAAVGEAVDAV 881 >gi|205830241|sp|Q31PW3|SYA_SYNE7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 876 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 358/904 (39%), Positives = 521/904 (57%), Gaps = 56/904 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR TFL+FF+ GH LPS+SLIP DPT++ T +GM+PFK IF GQ+ TT QK Sbjct: 11 IRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRATTSQK 69 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F + RL Sbjct: 70 CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPAERLA 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPG 185 ++V++ED+EAF +W+ G+ +I R+ DNFW+ TGPCGPCSEI++D E Sbjct: 126 VSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPELGND 185 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 GL E+ R+IE++NLVFMQ+ + L K +IDTGMGLERMA VLQ NNY+ Sbjct: 186 GL--DLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPNNYE 243 Query: 246 IDLFKHLIQASEQVTGMKY--EGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DL +IQA + Y E ++ V+ +VI DHLR+ + LIADG+ +N GRGYVLR Sbjct: 244 TDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGYVLR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RR + + RL+G P + M + YP L + + I+ L E++RF +TL Sbjct: 304 RLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFLETL 363 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RG LL L D+I G+ AF LYDT+G PL++ Q+I +GL +D+ F A+ Sbjct: 364 ERGEKLLA-ELLAAATDQI-RGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFEAAM 420 Query: 423 EEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKVLCQK 479 QR R++A ++ L T + L E+ T+F+GY D + +K Sbjct: 421 AAQRQRSQAAHETIDL---TVQGSLDRLAEQIHPTEFVGYGDAVATAK------------ 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G G+ + Sbjct: 466 ------------VTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 513 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DVQK++ G FVH+ +ERG+L+ S+ ID RR+ NH+ATHLL AL Sbjct: 514 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 572 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T EL+ IED +N IA+ V +M A Sbjct: 573 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 632 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY VRV+ V GV S LCGGTHV++T EI L I+SE+ + +G Sbjct: 633 KAKGAVAMFGEKYGAEVRVIDVP----GV-SMELCGGTHVANTAEIGLFKIISEAGVASG 687 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777 +RRIEA+ G +L +D ++ L+ K + RV + EE + + QL K Sbjct: 688 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 747 Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKE 833 +L + D + + D + ++ VD+ L++ + LQ+K+ +G ++L +E Sbjct: 748 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 807 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K +++ ++ + + GGGGGGRP++AQ+GG + +K +AIA Sbjct: 808 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGGGRPNLAQAGGRDASKLPEAIAAAL 867 Query: 894 SFLK 897 LK Sbjct: 868 DQLK 871 >gi|328950125|ref|YP_004367460.1| alanyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884] gi|328450449|gb|AEB11350.1| alanyl-tRNA synthetase [Marinithermus hydrothermalis DSM 14884] Length = 896 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 336/855 (39%), Positives = 482/855 (56%), Gaps = 77/855 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + IR +L+FF+ GH LPS SLIP +DPTL+FT +GM P K F G +PV+ Sbjct: 2 RTAEIREKYLKFFESKGHLALPSFSLIPEDDPTLLFTVAGMAPLKPYFLGA-RPVFPGHE 60 Query: 59 ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + V T QKC+R G D++NVGRT RH+TFFEMLGNFSFG YFK AI AW+ LT Sbjct: 61 GEHRRVVTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKREAILWAWEFLT 116 Query: 116 KE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168 LD RLY+TV+++D+EA+++W+ G+ ++I R ++NFW S GP Sbjct: 117 SPEWLGLDPDRLYVTVFEDDDEAYRIWRDEVGVPEERIGRFGEDENFWPANAISQGPNGP 176 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEE-------GERYIEIWNLVFMQFEQ----QNKQERF 217 CGPCSEIF+D+G PG GS++E G+R++E+WNLVF Q+ + + Sbjct: 177 CGPCSEIFYDRG---PGF--GSADETGPNTGSGDRFVEVWNLVFTQYNRTGPVPGPGQLE 231 Query: 218 ILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVD 277 LP+ +IDTGMGL R+A +LQ+ + YD D F+ +I +++G YEG V+HRVI D Sbjct: 232 PLPQRNIDTGMGLYRVAAILQDVQDFYDTDTFRPIIDRVVELSGRPYEGAASVSHRVIAD 291 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY 337 H+R+ ++DG + +N GRGYV+RR++RRA+ + LLG EP M L P + +G Y Sbjct: 292 HVRAVVAALSDGAVFSNTGRGYVIRRLLRRAVRHGYLLGLREPFMYRLAPVVAEVLGDYY 351 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PE+ E+ +R E+ERF TL+ G+ L+ +L + + +L+G+ AF+LYDT+G P Sbjct: 352 PEMRDNLPATEKAIRLEEERFLTTLESGIRRLEDLLQGIPQGGVLSGEEAFRLYDTYGFP 411 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGAT 455 D+ +I RG+ +D F +A+ Q+ RAR S G + + +L GAT Sbjct: 412 WDLTVEIAAERGVR-VDREGFERAMARQQERARKASAFTGEVFVKSAEALDTLVAARGAT 470 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI-VEEAVSGQKVEVV 514 +F GY L +++ +VL ++ +GE +E A +G++V+VV Sbjct: 471 EFTGYTTL------EDEGEVL------------------LILEGEAELERAEAGREVQVV 506 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+TPFYAE GGQ+GD G G R ++ +K +GI +H VE G+L + Sbjct: 507 LDRTPFYAEGGGQIGDFGYLEWAGGRARVVTTRKSPQGIHLHQVRVEEGVLEPGRRVRAV 566 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D RR NH+ATHLLH AL +LG HV Q GS + PD LRFD TH +P++ EL+ Sbjct: 567 VD-PARRATERNHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLSLEELER 625 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-------DGG 687 IE VN + + PV E+A GA AL G KY D VRVVSVE D Sbjct: 626 IERLVNRWVQADFPVTWTYKPLEEAKREGAMALFGEKYADVVRVVSVEGSPDVRGILDAP 685 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 V S LCGG HV TGEI I SE ++ AG+RRIEA+TG+ A + G + ++LA Sbjct: 686 VTSKELCGGCHVRRTGEIGYFVIRSEEALAAGVRRIEALTGEAAVAFARGLLNRTQALAR 745 Query: 748 FLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------NFMSHII 801 L + V RV+++ EE + + K +L L A+ +++ + Sbjct: 746 ELGTTVEAVPERVQKLQEELKARGREIERLKAELARAQLGTGGKAEAREAGGWRYLAAEL 805 Query: 802 SEVDSKELKSVMDAL 816 S +D L+ D L Sbjct: 806 SGLDMNALRRAADEL 820 >gi|189468166|ref|ZP_03016951.1| hypothetical protein BACINT_04561 [Bacteroides intestinalis DSM 17393] gi|189436430|gb|EDV05415.1| hypothetical protein BACINT_04561 [Bacteroides intestinalis DSM 17393] Length = 872 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 346/927 (37%), Positives = 517/927 (55%), Gaps = 96/927 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRNSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + + Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIDWAWEYLVEVLKI 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKNLYATVFEGSPEEGLERDNEAAAFWEQ--HLPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PGS +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDSRPEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G Y +N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIADMAGTAYGKDNQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQRQAFMYKLLPVLIENMGEAYPELEAQRE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LI + ++ E++ F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LISKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ DI F+ +++Q+ RAR ++ + +G W +LKE+ T+F+GY Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAIETGD----WITLKER--TTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + + Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D + R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPAHPEAPMMACVDTEKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695 I N+P+ R + EDA GA AL G KY D VRV+ SVE+ CG Sbjct: 617 AKIRANIPLKEYRNIPIEDAKELGAIALFGEKYGDHVRVIQFGSSVEF----------CG 666 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS--- 752 GTHV++TG I ++ IVSESS+ AG+RRIEA TG R + ++ LK L + + Sbjct: 667 GTHVAATGNIGMIKIVSESSVAAGVRRIEAYTGARVEELMDTIEDTLKDLKALFNNAPDL 726 Query: 753 QGNVVGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 G + +EE E++ + + K +L N++++ K+ I + + + Sbjct: 727 AGTIRKYIEENAGLKKQMEDFMREKEAQIKERLLKNMQEIHGIKVI------KICAPIPA 780 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865 + +K++ L+ +I + + G E K + ++++++L+ A +L + +AK++ Sbjct: 781 ESIKNIAFQLRGEITENLCFVAGTINEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+PH A +GG N + + AI V Sbjct: 840 GGGGGQPHFATAGGKNIDGLNAAIEKV 866 >gi|320449491|ref|YP_004201587.1| alanyl-tRNA synthetase [Thermus scotoductus SA-01] gi|320149660|gb|ADW21038.1| alanyl-tRNA synthetase [Thermus scotoductus SA-01] Length = 882 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 345/858 (40%), Positives = 489/858 (56%), Gaps = 67/858 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 + IR +L FF+ GH LPS SLIP NDP+L+FT++GM P K F G KP+ Sbjct: 2 RTAEIREKYLSFFEGKGHLRLPSFSLIPENDPSLLFTSAGMAPLKPYFLGA-KPIFGGKE 60 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-- 115 ++ +TT QKC+R G D++NVGRT RH+TFFEMLGNFSFG YFK+ AI AW+ LT Sbjct: 61 WRRITTCQKCLRVG----DIENVGRTARHNTFFEMLGNFSFGDYFKKEAILWAWEFLTDP 116 Query: 116 KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCG 170 K LD RL++TVY++D+EA+ +W+ + G+ +KI R ++N+W + GP G Sbjct: 117 KWLGLDPDRLWVTVYEDDDEAYAIWRDLVGVPEEKIGRFGEDENYWPGGAITHGPNGPSG 176 Query: 171 PCSEIFFDQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF----ILPKMSI 224 PCSEIF+D+G P ++ G+R++EIWNLVF Q+++Q LP+ +I Sbjct: 177 PCSEIFYDRGPAFGTPDETGPNTGSGDRFVEIWNLVFTQYDRQGPIPGPGILKPLPQKNI 236 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSF 284 DTGMGL R+A +LQ+ + Y D F +I+ +G YEG V+HRVI DH+R+ Sbjct: 237 DTGMGLYRVAAILQDVEDFYRTDTFYPIIERVALFSGKPYEGTASVSHRVIADHIRAVVA 296 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 +ADG+ +N GRGYV+RR++RRA+ + LLG EP + L P + +G YPE+ + Sbjct: 297 ALADGVTFSNTGRGYVIRRLLRRALRHGYLLGLQEPFLHRLAPVVAELLGDFYPEMRENL 356 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 +E+ +R E+ERF +TL+ GL LD +LS L E+L G AF+LYDT+G PLD+ +I Sbjct: 357 PAVEKQIRLEEERFLETLEGGLKRLDTLLSGLRPGEVLPGAEAFRLYDTYGFPLDLTVEI 416 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY---GATQFIGYD 461 RG G+D F +A+EEQ+ R+RA ++ +K L+E Y GAT+F+GY Sbjct: 417 AAERGF-GVDTEGFKRAMEEQQERSRA-AMAFEREIFKKSAQVLEELYAERGATEFLGYG 474 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L V A++ + +EEA G +V+VV D+TPFY Sbjct: 475 TLE-----------------------AEGTVLALLAGDQSLEEAGPGTEVQVVLDRTPFY 511 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE GGQ+GD G R ++ K GIF+H A VE G LR + +D RR Sbjct: 512 AEGGGQIGDFGHLEWPSGRARVETTLKTERGIFLHRAKVEEGTLRVGERVRAVVD-PARR 570 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 +H+ATHLLH AL +LG HV Q GS + PD LRFD TH +P+T EL+ IE VN Sbjct: 571 DTERHHTATHLLHAALRAVLGPHVRQAGSLVAPDRLRFDFTHPEPLTQEELERIELLVNR 630 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED-GGVHSSALCGGTHVS 700 I + PV R + E+A GA AL G KY + VRVV VE GV S LCGGTHV Sbjct: 631 WILADFPVTWRYLPLEEAKREGAMALFGEKYGEVVRVVRVEGSPLPGVESKELCGGTHVR 690 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 TGEI I E ++ AG+RR+EA+ G+ A G ++++LA L V + N+ R+ Sbjct: 691 RTGEIGAFLIQKEEAVSAGVRRLEAVAGEWAVRFARGALNRMRALAERLSVGEANLEERL 750 Query: 761 EEIWEEYR---------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS 811 E + +E + K +L+ A+ K ++++ + + + +S VD L+ Sbjct: 751 ERLLQELKAKEKEVESLKARLVQAELK-----KEVALSEKGGLRYGVLELSGVDMAALRQ 805 Query: 812 VMDALQKKIQSGIIMLVG 829 D L K ++L G Sbjct: 806 AADDLVAKGADVALVLSG 823 >gi|218246265|ref|YP_002371636.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8801] gi|218166743|gb|ACK65480.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 8801] Length = 879 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 345/898 (38%), Positives = 523/898 (58%), Gaps = 54/898 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+F+ H++LPS+SL+P DPT++ T +GM+PFK IF GQ+ P Y TT Sbjct: 11 AQIRDKFLQFYASKHHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKNPDYPRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI +W+L T+ F+L Sbjct: 70 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWSWELSTQVFNLPPEN 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 + ++V++ED+EAF++W+ G+ +I R+ DNFW TGPCGPCSE+++D + Sbjct: 126 IVVSVFEEDDEAFQIWQNSIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPEL- 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ NNY Sbjct: 185 GEENIDLEDDSRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + ++ G+ Y+ + V+ +VI DH+RS +IADGI +N RGYVL Sbjct: 245 ETDLIFPIIETAAKIAGINYKNTDEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + S YP + + + I+ L+ E+ RF +T Sbjct: 305 RRLIRRVVRHGRLIGIEGEFITQVAETAMQLSESVYPNVRERETAIKGELQREESRFLET 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL +++ K+ ++G AF LYDT+G PL++ Q+I +GL +D+ F A Sbjct: 365 LERGEKLLAEIIAKTPKNTAISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDVEGFEAA 423 Query: 422 LEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++EQ+ R++A ++ L G+ +K L E T+F+GY Sbjct: 424 MKEQQERSKAAHETIDLTVQGSLDK----LAEHIHPTEFLGYS----------------- 462 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + + + V+A++ G+ VE A +G +V+++ DQTPFY E+GGQ+GD G GD Sbjct: 463 ------SPQIIAKVQAVLVAGKTVENASAGTEVQIILDQTPFYGESGGQIGDRGYLTGDN 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++I DV KK GIFVH VERG + E ++ TID RR++ +H+ATHLL AL Sbjct: 517 LVVRIEDV-KKESGIFVHFGRVERGTIAVENTVTATIDRACRRRVQAHHTATHLLQAALK 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ++ +SQ GS + D LRFD + ITSAEL+ IE +N IA+ IM+ E Sbjct: 576 KVVDESISQAGSLVDFDRLRFDFNCPRSITSAELQEIEALINTWIAEAHDTQVSIMDLEK 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GA A+ G KY+ VRV+ V GV S LCGGTHV +T EI L I+SES I + Sbjct: 636 AKAKGAIAMFGEKYSAEVRVIDVP----GV-SMELCGGTHVKNTAEIGLFKIMSESGISS 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAK 776 G+RRIEA+ G +L ++ +K L K+ + R+ + E + Q L K Sbjct: 691 GVRRIEAVAGPAVLEYLNVRETVVKDLCDRFKIKPEEISDRITALQSELKTTQKELEAVK 750 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISKE 833 ++L + D + V ++SE +D K L++ + LQ+K+ ++L + E Sbjct: 751 QELAVAKSDQLLSQAESVGSFKILVSEMGDLDGKALQTAAERLQQKLGEAAVILASVPSE 810 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889 K VL+ + + + + + ++ + GGGGGGRP++AQ+GG + NK +A+ Sbjct: 811 DKV-VLVAAFSEKVHKEKQLMAGKFIGEIAKICGGGGGGRPNLAQAGGRDANKLPEAL 867 >gi|57233592|ref|YP_180805.1| alanyl-tRNA synthetase [Dehalococcoides ethenogenes 195] gi|83305845|sp|Q3ZAE4|SYA_DEHE1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|57224040|gb|AAW39097.1| alanyl-tRNA synthetase [Dehalococcoides ethenogenes 195] Length = 871 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 351/911 (38%), Positives = 531/911 (58%), Gaps = 55/911 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK + G KP Sbjct: 1 MFSSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENSR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T+ QKC R D+++VG + H T FEMLGNFS G YFK+ AI AW+ +T+ ++ Sbjct: 61 MTSCQKCFRT----TDIESVGDAS-HLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQ 179 +L++TVY +D+EA LWK+ G+ +I+R+ DNFW A ++GPCGPCSEI +D Sbjct: 116 PAEKLWVTVYLDDDEAIALWKE-QGVPEGRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174 Query: 180 GE---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 G+ C S + G R+ EIWNLVF+QF Q +R LP SIDTGMGLER+ + Sbjct: 175 GQEMGCGKADCNPSCKCG-RFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTIL 233 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q + N Y+ D+F +I+ + Q++G +Y + R++ +H R +FLIADG++P Sbjct: 234 MQFRKNVYETDIFAPVIEKACQLSGRQYGIDAETDKALRIVSEHSRGITFLIADGVIPDK 293 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GRGYVLRR++RRA+ + R LG +P ++ + A+ M YPEL + + + E + SE Sbjct: 294 AGRGYVLRRLLRRAVLFGRRLGLEKPFLVDMAGAVIARMSGIYPELNKRQAYVLEMIASE 353 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + RF +TL GL LL+ ++ +I +G AFKLYDT+G P+++ +I RGL+ +D Sbjct: 354 EARFSETLATGLELLEEIVRQTKGGQI-SGQDAFKLYDTYGFPVEMTTEIAAERGLS-VD 411 Query: 415 IISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLK--EKYGATQFIGYDLLRGSKFMKE 471 + F +E QR++AR+ + T + +++ EK T F+GY+L R Sbjct: 412 LGGFEAEMEVQRTKARSSRKFSFDAAATAEAVKNMRHGEK---TCFVGYELTR------- 461 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 QK S + I+ +G V+ G + +V D++PFYAE GGQ+GDT Sbjct: 462 ------QK----------STIMDILTEGGSVDSIEEGDEASIVLDESPFYAEMGGQVGDT 505 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G I G R ++ + G+F+H V G L+ + ID + RR ++ NH+ATH Sbjct: 506 GEIITGGGRFEVKNTLHLPNGVFLHQGRVISGCLKIAETAAAHIDEERRRDIARNHTATH 565 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +L AL +LG V Q GS +TP+ LRFD +H KP+T E++ E+ VND I +NLPV Sbjct: 566 ILQTALRQVLGEQVQQRGSVVTPERLRFDFSHLKPMTKDEIRRAEEFVNDKIRRNLPVYA 625 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M A+ G AL G KY DRVRV+ V S+ LCGGTHVS++GEI L IV Sbjct: 626 EEMPYRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVSASGEISLFKIV 682 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SESS+ AG+RRIEA+TG+ A +++ Q + L L+ L+ + ++ E+ EE L+ Sbjct: 683 SESSVGAGLRRIEAVTGREAEAYINLQQDSLSELSGMLEAAPEESPRKLAELKEEIDTLK 742 Query: 772 --LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826 + + +R++ + K D + ++S V++ L D L+ K+ SGII+ Sbjct: 743 KTVQNLERQMSRGEAEELLSKAEDYKGIKLLVSRMTSVNADTLHETADFLRDKLGSGIIV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G E K L +VT DL+++ ++A ++ + +++ GGGGGG+P+MAQ GG + K Sbjct: 803 L-GTVSEDKPFFLCMVTPDLIEKGYHAGNIVKKLSQI-AGGGGGGKPNMAQGGGRDKAKL 860 Query: 886 DQAIAGVASFL 896 D+A+ V L Sbjct: 861 DEALQAVKGML 871 >gi|56750673|ref|YP_171374.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 6301] gi|56685632|dbj|BAD78854.1| alanyl-tRNA synthetase [Synechococcus elongatus PCC 6301] Length = 892 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 357/904 (39%), Positives = 521/904 (57%), Gaps = 56/904 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR TFL+FF+ GH LPS+SLIP DPT++ T +GM+PFK IF GQ+ TT QK Sbjct: 27 IRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRATTSQK 85 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F + RL Sbjct: 86 CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPAERLA 141 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPG 185 ++V++ED+EAF +W+ G+ +I R+ DNFW+ TGPCGPCSEI++D E Sbjct: 142 VSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPELGND 201 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 GL E+ R+IE++NLVFMQ+ + L K +IDTGMGLERMA VLQ NNY+ Sbjct: 202 GL--DLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPNNYE 259 Query: 246 IDLFKHLIQASEQVTGMKY--EGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DL +IQA + Y E ++ V+ +VI DHLR+ + LIADG+ +N GRGYVLR Sbjct: 260 TDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGYVLR 319 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RR + + RL+G P + M + YP L + + I+ L E++RF +TL Sbjct: 320 RLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFLETL 379 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RG LL L D+I G+ AF LYDT+G PL++ Q+I +GL +D+ F A+ Sbjct: 380 ERGEKLLA-ELLAAATDQI-RGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFEAAM 436 Query: 423 EEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKVLCQK 479 QR R++A ++ L T + L E+ ++F+GY D + +K Sbjct: 437 AAQRQRSQAAHETIDL---TVQGSLDRLAEQIHPSEFVGYGDAVATAK------------ 481 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G G+ + Sbjct: 482 ------------VTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 529 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DVQK++ G FVH+ +ERG+L+ S+ ID RR+ NH+ATHLL AL Sbjct: 530 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 588 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T EL+ IED +N IA+ V +M A Sbjct: 589 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 648 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY VRV+ V GV S LCGGTHV++T EI L I+SE+ + +G Sbjct: 649 KAKGAVAMFGEKYGAEVRVIDVP----GV-SMELCGGTHVANTAEIGLFKIISEAGVASG 703 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777 +RRIEA+ G +L +D ++ L+ K + RV + EE + + QL K Sbjct: 704 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 763 Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKE 833 +L + D + + D + ++ VD+ L++ + LQ+K+ +G ++L +E Sbjct: 764 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 823 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K +++ ++ + + GGGGGGRP++AQ+GG + +K +AIA Sbjct: 824 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGGGRPNLAQAGGRDASKLPEAIAAAL 883 Query: 894 SFLK 897 LK Sbjct: 884 DQLK 887 >gi|300088455|ref|YP_003758977.1| alanyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528188|gb|ADJ26656.1| alanyl-tRNA synthetase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 856 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 352/902 (39%), Positives = 517/902 (57%), Gaps = 64/902 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +RT FL++F + GH+++PS+SLIP DPTL+ T +GMV FK F G+EKP +T+ QK Sbjct: 8 LRTLFLDYFAEKGHKVMPSASLIPHGDPTLLLTTAGMVQFKPYFLGREKPPATRLTSTQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C R D+D VG + H TFFEMLGNFS G YFK+ AI LAW+ +T+ L RL+ Sbjct: 68 CFRT----TDIDAVGDAS-HLTFFEMLGNFSVGDYFKKEAIDLAWEFVTERLGLPMERLW 122 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIPG 185 +TV+ +D+EA + W+ GL A++I+R+ DNFW A ++GPCGPCSEI +D GE Sbjct: 123 VTVFLDDDEAIRFWRD-KGLPAERIVRLGEKDNFWGPAGDSGPCGPCSEIHYDFGEAAGC 181 Query: 186 GLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G P G + R+ EIWNLVFMQF Q R LP+ +IDTGMGLER++ ++Q + Sbjct: 182 GKPDCGPACSCGRFCEIWNLVFMQFNQDTAGTRTPLPRPNIDTGMGLERLSAIMQGVPSV 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVL 301 Y D F +L+ +V+G +Y + + R++ +H R +FLIADG++P+NE RGYVL Sbjct: 242 YQTDRFDYLLDRVAEVSGREYGRDAETDRAMRIVAEHSRGITFLIADGVIPSNESRGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + R+LG +P M+ L+ A+ M AYPEL + I E + E+ RF +T Sbjct: 302 RRLLRRTALFGRMLGLDQPFMVPLVEAVIERMSPAYPELTGRREFIIELVAREESRFAET 361 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L G+ LL+ +++ G+ ++ G+ AF+LYDT+G PLD+ +I +G G+D F++ Sbjct: 362 LLTGMQLLEDMMAGAGEGRMITGEQAFRLYDTYGFPLDLTMEIASGKGF-GVDEAGFDRE 420 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 + QR +ARA G GT + + L + T F GYD L Q Sbjct: 421 MGRQREKARA---GARFGTDKAV--PLDHTFQHTCFTGYD-------------TLSQYGT 462 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIR 540 ID I++ Q I E G+ +V D+T FYAE GGQ GD G GD + Sbjct: 463 ID------GIIRNNAQTDVISE----GEHGGLVLDKTAFYAEMGGQAGDIGRITAGDSV- 511 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 ++T + G+ +H V RG R + +D R + NH+ATHLL AL + Sbjct: 512 FEVTGTVLLSPGVTIHQGYVARGAFRIGDEALTAVDPTTRYDTARNHTATHLLQAALIEV 571 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG H+ Q GS + PD LRFD +H K +T EL +E VN+ I +N PV DA+ Sbjct: 572 LGEHIQQRGSVVAPDRLRFDFSHLKAVTPEELIRVEAIVNERIRENHPVTAAETGYRDAL 631 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SG AL G KY + VRV+S+ D V S+ LCGGTH+ +TGEI I+SESS+ AG+ Sbjct: 632 KSGVTALFGEKYGETVRVLSIG-SDRRV-SAELCGGTHIRATGEIGYFKIISESSVGAGL 689 Query: 721 RRIEAITGQRARSHLMGQ----DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 RRIEA+TG+ A + L Q EKL+ L + L + + E+ + R L L Sbjct: 690 RRIEAVTGRGAEAWLSEQFTNSREKLERLQTELDDERRSAAELKRELARQ-RALSLTAGA 748 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 R D+ K+ V + + D + L+ + D L+ ++ S +I+L + +K Sbjct: 749 R-------DIDGGKLLAVE-----VPDTDMETLRDMADELRGRLGSAVIVLASVQGDKPV 796 Query: 837 SVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 L VT+DL+ R ++A ++ + +++ GGGGGG+PH+AQ GG + ++ +A+A V F Sbjct: 797 -FLAAVTDDLVARGYHAGNIIKRLSQI-AGGGGGGKPHLAQGGGRDKSRLAEALAAVNEF 854 Query: 896 LK 897 ++ Sbjct: 855 IR 856 >gi|298243740|ref|ZP_06967547.1| alanyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963] gi|297556794|gb|EFH90658.1| alanyl-tRNA synthetase [Ktedonobacter racemifer DSM 44963] Length = 880 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 344/914 (37%), Positives = 510/914 (55%), Gaps = 66/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL++F GH +PSSSL+P NDPT+M T +GM F G+E P +T+ Sbjct: 10 TEIRARFLDYFASKGHVKVPSSSLVPRNDPTVMLTTAGMQQMIPYFLGRETPPGSRLTSS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC R D+D VG R TFFEMLGNFS G YFK AI AW+ LT+ L +R Sbjct: 70 QKCFRT----TDIDIVG-NERTLTFFEMLGNFSVGDYFKREAITFAWEFLTQVIKLPAQR 124 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG--- 180 L+ TV+ ED+EA + W +I+G + I+R+ DN+W +GPCGP SEI++D+G Sbjct: 125 LHPTVHPEDDEAPRYWNEIAGYPDEAIVRL--EDNWWGPPGASGPCGPDSEIYYDRGVEH 182 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +C PG + ER++EIWNLVFMQF Q R LPK +IDTGMGLER++ Sbjct: 183 GCGRADCKPGC------DCERFLEIWNLVFMQFFQDRDGGRTPLPKTNIDTGMGLERLSM 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPA 293 V+Q K + +D D+F+ +I Q+TG Y V+ RVI DH R+ FL ADG+LP+ Sbjct: 237 VVQGKESVFDTDIFRAIIDHFAQLTGKTYGQETRVDTSLRVIADHARALVFLAADGVLPS 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGY+ RR++RRA+ + +LLG +P + + MG Y EL + I + L Sbjct: 297 NEGRGYIFRRVLRRAVRHGKLLGLDQPFLSIAADTVIKLMGDYYTELRTQRDRIVDVLSL 356 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+++F +TL+ GL LL +LS L + EI + G FKLYD+HG P+++ Q+I +G Sbjct: 357 EEKKFSQTLNTGLQLLTSLLSDLRQKEISVIPGTEVFKLYDSHGFPVELTQEIASEQGFT 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F QA+++Q+ R+RA S E + ++ G T+F GY + G+ Sbjct: 417 -IDAAGFEQAMQQQQERSRAAS-NFAQADHETNLDEVLQRIGPTKFTGYQGIAGT----- 469 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A+ G VE + Q+ + D TPFYAE+GGQ+GD Sbjct: 470 ------------------GKVVALFVDGREVESISAPQQALAILDATPFYAESGGQIGDR 511 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++ D ++ +G++VH+ + G LR S+ + Q R NHSATH Sbjct: 512 GDLLAQAGVFKVQDTRRPVKGLYVHYGEIAEGYLRVGDSVQAEVISQRREDTMRNHSATH 571 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LG+ V Q GS + P+ LRFD + + +T+ EL I+ VN I + PV T Sbjct: 572 LLHKALRDLLGTQVEQRGSLVEPERLRFDFSSQRGLTTDELAQIDAQVNRWIRADYPVDT 631 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 IM ++A+A+GA AL G KY+D VRVVS+ S+ LCGGTH +STG+I L V Sbjct: 632 TIMPIQEALATGAMALFGEKYDDLVRVVSMG------SSTELCGGTHCASTGQIGLYLTV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL- 770 E+S+ AGIRRIEA+TG+ A ++L + + SLA+ L+V + RVE++ E L Sbjct: 686 QETSVAAGIRRIEALTGRAAEAYLRRRSALVDSLAARLQVQTDTLEARVEQMQHELSTLR 745 Query: 771 ----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 Q + Q+ L +++ V ++ + D K L+ + + ++ K++ ++ Sbjct: 746 KQVAQFMRENAVRQVETLVLQGQELSGVTIIATSVDVPDDKVLREMGEMMRSKLKQPHVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNK 884 ++ E++ ++ + V L R + +++A V GG GGGRP +AQ GG N + Sbjct: 806 VLAAPLEERIALQVNVEPSLTKR--GLHAGKIAAAVGQKLGGKGGGRPDVAQGGGKNKAE 863 Query: 885 ADQAIAGVASFLKK 898 A+ V F+++ Sbjct: 864 LGAALDLVTQFVRE 877 >gi|154148426|ref|YP_001406547.1| alanyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381] gi|205830014|sp|A7I206|SYA_CAMHC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|153804435|gb|ABS51442.1| alanyl-tRNA synthetase [Campylobacter hominis ATCC BAA-381] Length = 845 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 360/890 (40%), Positives = 525/890 (58%), Gaps = 65/890 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL+FF GHE++ S+ L+P +D +L+FTN+GMVPFKNIFTG +P T+ Q Sbjct: 3 IRKEFLDFFASKGHEIIASAPLVP-DDASLLFTNAGMVPFKNIFTGAVPRPTPPIRTSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDLDNVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ LD+ +L Sbjct: 62 TCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGEYFKENAIAYAWEFITEILKLDKDKL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184 Y+TV+++D+EAF++W K ++ ++I R +DNFW+M +TGPCGPCSEIF+DQGE Sbjct: 122 YVTVHEKDDEAFEIWAK--HIAKERIYRFGDHDNFWAMGDTGPCGPCSEIFYDQGEEYFH 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQFE+ LPK SIDTGMGLER+ + + +NY Sbjct: 180 GKEDYMGGDGDRFLEIWNLVFMQFERDKAGNLSPLPKPSIDTGMGLERVTAIKEGVFSNY 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D +F LI A E++ G Y+ + ++RVI DH+RS +FLIA G+ EGRGYVLRRI Sbjct: 240 DSSIFMPLIHAVEKLCGKPYKYESGASYRVIADHIRSITFLIAQGVNFDKEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG EP M L+ +C MG Y L++ K I+E ++ E+ERF T+ Sbjct: 300 LRRALRHGYLLGLKEPFMYKLVDNVCELMGHHYSYLLEKKETIKEIIKLEEERFLSTISA 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 GL L L++ ++ +G++AFKLYDT+G PLD+ D+L G +D F++ + E Sbjct: 360 GLELFKAQLANT--KDVFSGEIAFKLYDTYGFPLDLTADMLREIG-KKVDEKKFDELMNE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 Q++RA+A G G EK F +L EK+G +FIGY+ MK K+L Sbjct: 417 QKARAKASWKGSGDKIKEKGDFKALLEKFGENKFIGYET------MKSQSKILAI----- 465 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 L N + V+E +G ++ D+TPFYA++GGQ+ DTG G ++ Sbjct: 466 LNNDFRN-----------VDELKAGNIGWIMLDETPFYAQSGGQIYDTGLINGSN---KV 511 Query: 544 TDVQKKAEGIF-VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 TD QK F ++ + VE +V + R + + +HSATHLLH AL ILG Sbjct: 512 TDTQK----FFGLNLSEVETSTNLKVGDIVKCEVDEARIETARHHSATHLLHLALREILG 567 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 S V Q GS + + LRFD T+ K +TS +L IE+NVN I++ T IM+ +AI S Sbjct: 568 SGVGQAGSSVDSERLRFDFTYPKSLTSEQLLKIENNVNSQISKGGASKTEIMDINEAIKS 627 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A+ KY D+VRV+++ S CGGTHV + EI YIV ES + AG+RR Sbjct: 628 GAIAMFSEKYGDKVRVLTLG------ESKEFCGGTHVRNLWEIGSFYIVKESGVSAGVRR 681 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLN 782 IEA+ + A ++ + + + LK ++ + ++++ +E + L+ Sbjct: 682 IEAVCSKAAINYAKNFRSEFSEVQNALKSNEA--LSAIKKLKDEI---------KSLKNE 730 Query: 783 VEDLSCHKIADV---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 + S K+ D+ N + ++SE D ++K+ +D L+ + I+ + ++ + + Sbjct: 731 ISKASAAKVIDLDEKNGIKFVVSEFDG-DIKTKIDELKNE-NDKIVAVFFKVEDGRVQIA 788 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 V L A ++ + AK+L GGGGGGR A +GG + K D+A+ Sbjct: 789 AGVKNAPL---KAGEIVKQIAKIL-GGGGGGRDDFATAGGKDMTKIDEAV 834 >gi|313904037|ref|ZP_07837417.1| alanyl-tRNA synthetase [Eubacterium cellulosolvens 6] gi|313471186|gb|EFR66508.1| alanyl-tRNA synthetase [Eubacterium cellulosolvens 6] Length = 897 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 345/915 (37%), Positives = 522/915 (57%), Gaps = 65/915 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FL +F++ L S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 9 VNELREMFLSYFEEKECLRLGSFSLVPHNDNSLLIINSGMAPMKPWFTGQEIPPRKRVTT 68 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G DL+NVG+T RH TFFEMLGNFSFG YFK+ AI AW+ LT+ LD Sbjct: 69 CQKCIRTG----DLENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFLTERVGLDAD 124 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG--- 180 RLY +VY +DEE++ +W + A++I + DNFW +GPCGPC+EI++D+G Sbjct: 125 RLYPSVYVDDEESYNIWLNDMHIPAERIYKFGKEDNFWEHG-SGPCGPCTEIYYDRGPQF 183 Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 E + GG EG+R++E+WN+VF QF K L + +IDTGMGLER+A Sbjct: 184 GNGPEDVMGG------EGDRFMEVWNVVFSQFNNDGKGNYTDLVQKNIDTGMGLERLAVA 237 Query: 237 LQEKTNNYDIDLFKHLIQ-ASEQVTGMKYEGNNI----VNHRVIVDHLRSSSFLIADGIL 291 +QE + +D+D K L E G+KYE V+ R++ DH R+ +F+I+DGI+ Sbjct: 238 VQEVGSLFDVDTVKALRDLICELAGGVKYEQPGTEESDVSVRIVTDHARAMTFMISDGIM 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+N GRGYVLRRI+RRA+ + R LG T + L + YPEL + + I + Sbjct: 298 PSNNGRGYVLRRIIRRAVRHGRKLGITGSFLTKLAENVIEGSKDGYPELAEKRDFILNVI 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++E+++F KT ++G+ +L + L GK E L+G AFKLYDT+G PLD ++IL Sbjct: 358 QAEEDKFEKTYEQGMDILQSMQDALKAEGKKE-LSGPDAFKLYDTYGFPLDNTKEILEEN 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-----GTTEKIWFSLKEKYGATQFIGYDLL 463 G A +D+ F A++ QR AR G G ++ + + F+GY L Sbjct: 417 GFA-VDVAGFEAAMKNQRETAREDRKKSGKSATYMGAAATVYEDMDPAVNSA-FVGYQGL 474 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + K++ + S+ +A+ GQ V+ DQTPFY Sbjct: 475 EATG------KIVALAAFAADDDEDDSVAEALS----------DGQSGAVITDQTPFYGT 518 Query: 524 AGGQLGDTGC-AIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+GD G +GDG +++ + A H V +G+L+T + L +D +NR Sbjct: 519 MGGQIGDKGVIVLGDGEAVFEVSATEHVAGNKIAHIGKVVKGMLKTGDEVSLKVDAKNRL 578 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NHSATHL+ AL +LG+HV Q GS D RFD +H + +TS E++ +ED VN+ Sbjct: 579 AIARNHSATHLMQKALREVLGTHVEQAGSYQDADRTRFDFSHFQAMTSEEIRKVEDMVNE 638 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I++ L V T++M ++A +GA AL G KY D VRVV + G S+ LCGGTHV + Sbjct: 639 KISEGLAVTTQVMTLDEAKKTGAMALFGEKYGDEVRVVKM-----GDFSTELCGGTHVEN 693 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I I+SE+ + AG+RRIEA+TG R + + + + A+ LK + + + Sbjct: 694 TQQIAQFKILSENGVAAGVRRIEALTGDNVRRYYEKLEAQTNAAAALLKATPATLADHIR 753 Query: 762 EIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDAL 816 ++ EE + L+ + K K N + I ++N F++ +S VD EL+++ D L Sbjct: 754 KLQEELKALKSENEALKSKEAQNALGDVMNNIKEINGVPFLATAVSGVDMNELRNLGDEL 813 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 + K+ G+++LV + K +++ + T++ + + +A ++ + SAK++ GGGGGGRP+MA Sbjct: 814 KAKVAGGVVLLVS-DNDGKVNMMCMATDEAMKKGAHAGNIIKASAKIV-GGGGGGRPNMA 871 Query: 876 QSGGPNGNKADQAIA 890 Q+GG + + AIA Sbjct: 872 QAGGKDASGIPAAIA 886 >gi|147668699|ref|YP_001213517.1| alanyl-tRNA synthetase [Dehalococcoides sp. BAV1] gi|205830043|sp|A5FSU1|SYA_DEHSB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146269647|gb|ABQ16639.1| alanyl-tRNA synthetase [Dehalococcoides sp. BAV1] Length = 871 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 344/909 (37%), Positives = 529/909 (58%), Gaps = 51/909 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK + G KP Sbjct: 1 MFSSDELRENYLKFFEEKGHKRIASSSLIPHNDPTLLLTTAGMVQFKPYYLGVAKPENPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + + QKC R D+++VG + H T FEMLGNFS G YFK+ AI AW+ +T+ ++ Sbjct: 61 MASCQKCFRT----TDIESVGDAS-HLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQ 179 RL+ITVY +D+EA LWK+ G+ ++I+R+ DNFW A ++GPCGPCSEI +D Sbjct: 116 PAERLWITVYLDDDEAIALWKE-QGVPENRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174 Query: 180 GE---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 G+ C S + G R+ EIWNLVF+QF Q +R LP SIDTGMGLER+ + Sbjct: 175 GQETGCGKADCNPSCKCG-RFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTIL 233 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPAN 294 +Q K N Y+ D+F +++ + ++G KY + + R++ +H R +FLIADG++P Sbjct: 234 MQSKKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDK 293 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GRGYVLRR++RRA+ + R LG P ++ + A+ M YPEL + + + E + SE Sbjct: 294 AGRGYVLRRLLRRAVLFGRRLGLERPFLVDMAGAVINRMSGIYPELKKRQTYVLEMIASE 353 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + RF +TL GL LL+ ++ K ++G AFKLYDT+G P+++ +I +GL+ +D Sbjct: 354 EARFSETLATGLELLEEIVRQT-KGGRISGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VD 411 Query: 415 IISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 + F +E QR++AR+ + T + +++ T F+GY+L Sbjct: 412 LDGFESEMEIQRTKARSSRKFSFDAAATAEAVKNMRHAE-KTCFVGYELA---------- 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 QK S +K I+ +G V+ G + +V D++PFYAE GGQ+GDTG Sbjct: 461 ---IQK----------STIKDILTEGGTVDSIEEGDEASIVLDESPFYAEMGGQVGDTGE 507 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 I D R ++ + G+F+H V G L+ + I+ + RR ++ NH+ATH+L Sbjct: 508 IITDAGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHIL 567 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG V Q GS +TPD LRFD +H KP++ E++ +E+ VND I +NLPV Sbjct: 568 QTALREVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEE 627 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M A+ G AL G KY DRVRV+ V S+ LCGGTHV+++GEI L I+SE Sbjct: 628 MPYRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 SS+ AG+RRIEA+TG+ A + + Q + L L+ L+ + ++ E+ EE L+ Sbjct: 685 SSVGAGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKA 744 Query: 772 LIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + +R++ + K D V + ++ V++ L+ D L+ K+ SG+I+L Sbjct: 745 VQNLERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL- 803 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K L +VT DL+ + ++A ++ + +++ GGGGGG+P+MAQ GG + +K D+ Sbjct: 804 GTVTEDKPFFLCMVTPDLIAKGYHAGNIVKKLSQI-AGGGGGGKPNMAQGGGRDKSKLDE 862 Query: 888 AIAGVASFL 896 A+ V + Sbjct: 863 ALQAVKGMI 871 >gi|291087654|ref|ZP_06347045.2| alanine--tRNA ligase [Clostridium sp. M62/1] gi|291074356|gb|EFE11720.1| alanine--tRNA ligase [Clostridium sp. M62/1] Length = 868 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 345/900 (38%), Positives = 516/900 (57%), Gaps = 55/900 (6%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT QKC+R Sbjct: 2 FLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTTCQKCIRT 61 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130 G D++N+G+T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD RLY +VY Sbjct: 62 G----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPDRLYPSVY 117 Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190 +D+EAF +W K G+ A++I R DNFW GPCGPCSEI++D+GE G PG Sbjct: 118 QDDDEAFDIWNKEMGIPAERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPGC 176 Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248 + + +RYIE+WN VF QF+ L +IDTGMGLER+A ++Q+ + + ID Sbjct: 177 TVGCDCDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVIVQDVDSLFTIDT 236 Query: 249 FKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306 K L+ + G +Y+ ++ V+ R++ DH++S +F+I+DGI+P+NEGRGYVLRR++R Sbjct: 237 NKALLDRVCALAGKEYQKDHETDVSLRIVTDHIKSCTFMISDGIMPSNEGRGYVLRRLLR 296 Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366 RA + R LG + L + YPEL + K +I + L E+++F KT+D+GL Sbjct: 297 RAARHGRKLGIEGKFLAELSRTVIELSKDGYPELDEKKAMIFKVLTEEEDKFNKTIDQGL 356 Query: 367 VLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 +L+ + S + K +++L+G+ AFKLYDT+G P+D+ ++IL R L+ +D F +++ Sbjct: 357 SILNEMESEMAKKGEKVLSGENAFKLYDTYGFPVDLTKEILEERDLS-VDEEGFAACMKK 415 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 Q+ ARA + + + T+F+GYD L Sbjct: 416 QKDAARAARKTTNYMGADVTVYQSIDPAVTTEFVGYDRLVHE------------------ 457 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 S + + + E+VE GQ ++ +TPFYA GGQ D G + ++ Sbjct: 458 -----SEITVLTTEDELVEALTDGQNGTIIVKETPFYATMGGQQADIGVISTENGTFEVK 512 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 D K G H V +G+ + + LT++ +NR + NHSATHLLH AL T+LG+H Sbjct: 513 DTIKLQGGKVGHVGTVTKGMFKVGDQVTLTVNKENRELTARNHSATHLLHKALRTVLGTH 572 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 V Q GS +T D LRFD TH +T E+ ++E VND IA +LPVVT IM+ E+A +GA Sbjct: 573 VEQAGSLVTKDRLRFDFTHFSAMTPDEIAAVEKMVNDEIAASLPVVTDIMSLEEAKKTGA 632 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 AL G KY + VRVV + G S+ LCGGTHV +T I IVSE+ I AG+RRIE Sbjct: 633 MALFGEKYGESVRVVRM-----GDFSTELCGGTHVPNTSTISAFKIVSEAGIAAGVRRIE 687 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784 A+T + +++L A +K + + +++ + +E + L + K K +L + Sbjct: 688 ALTSTGLMDYYHEMEQELHEAAKLVKSTPAALHDKLQAMLDELKALHSENEKLKSRLAND 747 Query: 785 DL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 L +I V ++ + VD L+++ D L++K+ G++++ + ++ K +++ Sbjct: 748 SLGDVLNQVKEINGVKLLAVRVDGVDMNGLRNLGDQLKEKLGEGMVVIASV-QDGKVNLM 806 Query: 840 IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 TE + +A +L + A ++ GGGGGGRP+MAQ+GG N AGV L+K Sbjct: 807 ASATEGAQKKGAHAGNLIKAIASLV-GGGGGGRPNMAQAGGKNP-------AGVEDALRK 858 >gi|194337650|ref|YP_002019444.1| alanyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1] gi|194310127|gb|ACF44827.1| alanyl-tRNA synthetase [Pelodictyon phaeoclathratiforme BU-1] Length = 888 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 350/917 (38%), Positives = 513/917 (55%), Gaps = 98/917 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +FL++F + H ++ S+ +IP +DPTL+FTN+GM FK++F G+ Y QK Sbjct: 6 IRQSFLDYFAQKAHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGKGSRPYVRAADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT + L + RLY Sbjct: 66 CIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKQEAITWAWELLTDVWKLPKERLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 TVY +D+E+F++WK + ++ D IIR DNFW M ETGPCGPCSEI D E G Sbjct: 126 ATVYQDDDESFQIWKTATDINPDHIIRFGEKDNFWEMGETGPCGPCSEIHIDLTE--DGS 183 Query: 187 LPGSSEEGE-RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 G+ R IE+WNLVF+Q+ +Q+ LP +DTGMG ER+A VLQ K +NYD Sbjct: 184 GHSLVNVGDYRVIELWNLVFIQYNRQSDGSLEPLPMKHVDTGMGFERVAAVLQGKGSNYD 243 Query: 246 IDLFKHLIQASEQVTGMKYEGNNI-----VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 D+F+ L ++TG++Y G ++ + RVI DH R+ +F ++DG +P+NEGRGYV Sbjct: 244 SDVFQPLFDRITEITGVRY-GASMDDPLDIAMRVIADHARTLTFALSDGAMPSNEGRGYV 302 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ Y++ LGY EP++ L+ L MG +PEL + + + + +R+E+E F Sbjct: 303 LRRILRRALRYSKNLGYNEPILHQLVGTLAASMGDVFPELRKQQETVSKIIRAEEESFIV 362 Query: 361 TLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLDRG+ + + V+ + + G+ AFKLYDT+G P D+ + + G + +D F Sbjct: 363 TLDRGIEIFNEVIEQVRSANSTTITGEDAFKLYDTYGFPFDLTRLMASDVGFS-VDGEGF 421 Query: 419 NQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 +++Q++RAR + ++ +WFS + ++F GYD L Sbjct: 422 EHCMQQQKTRARTDRKEKHQVQDDGSQWLWFSDVHR---SEFAGYDQL------------ 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + P+ L G+ + QG+++ +V D+TPFYAE+GGQ+GD G Sbjct: 467 ---EMPV-LITGIKHL------QGKLL----------LVLDRTPFYAESGGQVGDRGWIE 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVER--GILRT------------EMSLVLTIDYQNRR 581 RLQ++D K + I H + E IL T E+S ++D R+ Sbjct: 507 SATYRLQVSDTIKDGDAIV--HLVTEAFDKILDTPISVDDLQLDEKELSAEASVDRHLRQ 564 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 NH+ATHL+H AL ILG HV Q GS + + LRFD +H +T AE++++E +VND Sbjct: 565 DTECNHTATHLMHSALRRILGQHVQQKGSYVNAERLRFDFSHFSRMTEAEIEAVEADVND 624 Query: 642 IIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I + PV + +DAIA GA A G KY DRVRV+ + G+ S LCGGTH Sbjct: 625 HIRRAEPVQKHADVLYDDAIAMGALAFFGDKYADRVRVIEIP----GI-SVELCGGTHAD 679 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 + G I L IVSESS+ +G+RRIEA+TG+ A L + +L+ + LK V + Sbjct: 680 NIGRIGLFKIVSESSVASGVRRIEALTGKAAEKLLWKEYHELQQVRHLLKAKGDEPV--L 737 Query: 761 EEIWEEYRKLQLIHAKRKLQ--------------LNVEDLSCHKIADVNFMSHIISEVDS 806 E+I + L+ AK++L+ L E + I+ M+ ++ EVD Sbjct: 738 EKI------VALMDAKKELEKELSGSRVGSLVTSLTAELDASPDISGCRVMTKVLEEVDG 791 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLG 864 L+ AL+ + S +L + K A L+ D R +D +L A Sbjct: 792 DTLRQAALALRDQATSVAGLLCSVEDGKIA--LVSFASDKAVREFGIDAGKLIREAAQCV 849 Query: 865 GGGGGGRPHMAQSGGPN 881 GGGGG+P A +GG N Sbjct: 850 HGGGGGKPEFATAGGKN 866 >gi|205371826|sp|Q5N4B5|SYA_SYNP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 876 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 357/904 (39%), Positives = 521/904 (57%), Gaps = 56/904 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR TFL+FF+ GH LPS+SLIP DPT++ T +GM+PFK IF GQ+ TT QK Sbjct: 11 IRETFLKFFEGKGHRRLPSASLIP-EDPTVLLTIAGMLPFKPIFLGQQVAEVPRATTSQK 69 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+L+T+ F + RL Sbjct: 70 CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAFAWELVTEVFQVPAERLA 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPG 185 ++V++ED+EAF +W+ G+ +I R+ DNFW+ TGPCGPCSEI++D E Sbjct: 126 VSVFEEDDEAFAIWRDQIGVPEARIQRLGAKDNFWASGPTGPCGPCSEIYYDFHPELGND 185 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 GL E+ R+IE++NLVFMQ+ + L K +IDTGMGLERMA VLQ NNY+ Sbjct: 186 GL--DLEDDSRFIEVYNLVFMQYNRDAAGNLTALEKQNIDTGMGLERMAQVLQGVPNNYE 243 Query: 246 IDLFKHLIQASEQVTGMKY--EGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DL +IQA + Y E ++ V+ +VI DHLR+ + LIADG+ +N GRGYVLR Sbjct: 244 TDLIFPIIQAVAAIAQRDYASESESVKVSLKVIGDHLRAVTHLIADGVTASNLGRGYVLR 303 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RR + + RL+G P + M + YP L + + I+ L E++RF +TL Sbjct: 304 RLIRRVVRHGRLIGIDRPFTAEIAETAIALMAAQYPNLREREAAIKAELTREEQRFLETL 363 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RG LL L D+I G+ AF LYDT+G PL++ Q+I +GL +D+ F A+ Sbjct: 364 ERGEKLLA-ELLAAATDQI-RGEDAFVLYDTYGFPLELTQEIAEEKGLT-VDLAGFEAAM 420 Query: 423 EEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKVLCQK 479 QR R++A ++ L T + L E+ ++F+GY D + +K Sbjct: 421 AAQRQRSQAAHETIDL---TVQGSLDRLAEQIHPSEFVGYGDAVATAK------------ 465 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 V A++++G+ VE A +G +V++V D TPFYAE+GGQ+GD G G+ + Sbjct: 466 ------------VTALLREGQSVEAAEAGDRVQIVLDHTPFYAESGGQVGDRGVLTGESL 513 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DVQK++ G FVH+ +ERG+L+ S+ ID RR+ NH+ATHLL AL Sbjct: 514 IVRIEDVQKES-GFFVHYGQIERGLLQVGDSVTAQIDRACRRRAQANHTATHLLQAALKL 572 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T EL+ IED +N IA+ V +M A Sbjct: 573 IVDEGISQAGSLVAFDRLRFDFNCPRAVTPEELRQIEDQINQWIAEAHGTVVEVMPIATA 632 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY VRV+ V GV S LCGGTHV++T EI L I+SE+ + +G Sbjct: 633 KAKGAVAMFGEKYGAEVRVIDVP----GV-SMELCGGTHVANTAEIGLFKIISEAGVASG 687 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777 +RRIEA+ G +L +D ++ L+ K + RV + EE + + QL K Sbjct: 688 VRRIEAVAGPAVLEYLNVRDAVVRDLSDRFKAKPEELSDRVTALQEELKANQKQLTALKA 747 Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKE 833 +L + D + + D + ++ VD+ L++ + LQ+K+ +G ++L +E Sbjct: 748 ELAIAKSDALVSQAIPVGDAQVLVETLTGVDAAALQTAAERLQQKLGDAGAVVLGSSPEE 807 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 K +++ ++ + + GGGGGGRP++AQ+GG + +K +AIA Sbjct: 808 GKVTLVAAFGPAIIAKGLKAGQFIGGIAKICGGGGGGRPNLAQAGGRDASKLPEAIAAAL 867 Query: 894 SFLK 897 LK Sbjct: 868 DQLK 871 >gi|317495192|ref|ZP_07953562.1| alanyl-tRNA synthetase [Gemella moribillum M424] gi|316914614|gb|EFV36090.1| alanyl-tRNA synthetase [Gemella moribillum M424] Length = 863 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 340/908 (37%), Positives = 524/908 (57%), Gaps = 82/908 (9%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 +L+FF + GH++ PS+SL+P +DP+L++ NSG+ K F G+E P +T QK +R Sbjct: 2 YLDFFVEKGHKIEPSASLVPVDDPSLLWINSGVATLKKYFDGREIPENPRITNSQKSIRT 61 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYIT 128 ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT E L++ +L +T Sbjct: 62 ----NDIENVGKTARHHTFFEMLGNFSIGDYFKPEAIAWAWEFLTSEKWLALEKEKLSVT 117 Query: 129 VYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-------- 180 V+ ED EA+ +W+ + GL D+IIRI NFW + E GP GP +EIF+D+G Sbjct: 118 VHPEDTEAYDIWRNVIGLPEDRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGPEADTWSP 174 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E PGG E +RY+E+WN+VF Q+ LP +IDTGMGLER+ +VLQ Sbjct: 175 KEEMYPGG------ENDRYLEVWNVVFSQYNHNADGTYTELPAKNIDTGMGLERIVSVLQ 228 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 + N+D DLF +I+ E+++G KY V +VI DH+R+ +F IADG LP+NEG Sbjct: 229 DVPTNFDTDLFIPIIREIEKLSGAKYGVSKEQDVAFKVIADHIRTVTFAIADGALPSNEG 288 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGY+LRR++RRA+ +A++LG M L + M YP + ++ +++ + E++ Sbjct: 289 RGYILRRLLRRAVRFAKILGLNSSFMYKLTDIVAEIMIDYYPNVKESVSFVKDVILKEED 348 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL G +L + + + KD ++++G+ AFKLYDT G P+++ ++ GL +D Sbjct: 349 RFHETLHEGEAILTNIANEV-KDTTKVISGEDAFKLYDTFGFPIELTEEYAEELGLT-VD 406 Query: 415 IISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 I FN+ +E+Q+ RARA S+ + S +I G ++F+GY ++ + Sbjct: 407 IDGFNEEMEKQKERARASRHDDSSMQVQSDLYNRI-------IGDSEFVGY-----TQLI 454 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 ++ K+L AIV ++ ++++ V+VVF++TPFYAE+GGQ+ Sbjct: 455 EKSSKLL-----------------AIVDKEDNLLDKYTGADVVKVVFERTPFYAESGGQV 497 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G I G + ++ DV+K + +H V G L L ++ R + NH+ Sbjct: 498 ADCGEIIALGFKGEVLDVKKLPDKRHIHFVKVVEGELLVGNEYGLVVNRNYRLNIEKNHT 557 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL+ AL +G+H+ Q GS +T D LRFD+TH P+T E++ +E VN+ I L Sbjct: 558 ATHLLNEALRQQVGTHIKQAGSLVTDDKLRFDITHFAPLTKEEIERVEQEVNEQIWNALE 617 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + T M +A GA AL G KY D VRVVS+ G +S LCGGTH +++ E+ + Sbjct: 618 IKTEEMPIAEARKLGAQALFGEKYGDVVRVVSI-----GDYSIELCGGTHNANSSEVGIF 672 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I+SES + AG+RRIEA+TG+ A +L Q++ L S+ K + NV+ +V + E + Sbjct: 673 KIISESGVAAGVRRIEALTGRAAYEYLRSQEDTLSSVEKLTKSNSTNVIEKVSSLQVEIK 732 Query: 769 KLQLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQ 821 K L K LQ + + + I +VN +S + S V+S+ LK ++D + K++ Sbjct: 733 K--LTKEKEILQQKIANAELNNLVNDIKEVNGVSVLTSVVESENMNHLKQLVDNAKSKLE 790 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + +I I+ E K + ++ V + + D++NA L + A V G GGGRP MAQ+G N Sbjct: 791 NYVIAFASIN-EDKVNFVVAVDKAITDKYNAGKLVNVLATVC-DGRGGGRPDMAQAGAKN 848 Query: 882 GNKADQAI 889 ++A Sbjct: 849 KENINKAF 856 >gi|269798241|ref|YP_003312141.1| alanyl-tRNA synthetase [Veillonella parvula DSM 2008] gi|269094870|gb|ACZ24861.1| alanyl-tRNA synthetase [Veillonella parvula DSM 2008] Length = 871 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 341/908 (37%), Positives = 504/908 (55%), Gaps = 59/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P + +TT Sbjct: 4 NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRITTC 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK +R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD+ R Sbjct: 64 QKSMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176 Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 C P PG + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL +I+A+ + G+ Y + N V+ +VI DH R+ + LI+DG+LP+NEGRG Sbjct: 235 KTNFETDLIFPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ERF Sbjct: 295 YVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGITSIAEKQDFVKRVVQNEEERF 354 Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A++EQR RAR +KE +K D L Sbjct: 414 GFEAAMKEQRERAREA--------------RVKED--------------AKVATPDITFL 445 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++ +S V + + E ++ A G ++ V+ TPF+AE GGQLGDTG +G Sbjct: 446 KDEELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH A Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAA 565 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 566 LKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEVLVNEEILKATDLAIAEMSM 625 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SE+ I Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGI 680 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEAITG+ A ++ +AS LK + R+ ++ E ++ +L Sbjct: 681 GSGVRRIEAITGRAALDAAKQDRLTIERMASELKTKAPQIEERLHQVLAEAKETAKELEQ 740 Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830 ++++ + DV F++ + EL+ + D L K SG++++ + Sbjct: 741 IRKEVSAAGAADIIAGKVVVGDVEFVAAAVKASSIDELRDLADMGLDKMNGSGVVLVGAV 800 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + + V++D++ + A ++ + +A+V GG GGGRP MAQ+GG K +A+ Sbjct: 801 MGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMEAL 859 Query: 890 AGVASFLK 897 LK Sbjct: 860 KAGGEALK 867 >gi|257452890|ref|ZP_05618189.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] gi|317059432|ref|ZP_07923917.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] gi|313685108|gb|EFS21943.1| alanyl-tRNA synthetase [Fusobacterium sp. 3_1_5R] Length = 866 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 337/908 (37%), Positives = 519/908 (57%), Gaps = 62/908 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF+ H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK AI +W+ +T+ L + + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKREAIVWSWEFVTEVLGLPKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+W+ TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWIEDCHFPKERIVRMGESENWWAAGPTGSCGPCSEIHVDLGPEY- 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG RYIEIWNLVF ++ + LPK +IDTG GLER+A ++Q K Sbjct: 179 GGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NN++ DL L++ + ++T KY + + +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 SNNFETDLLFPLVEEAGRLTNSKYHESPEKDFSLKVITDHSRAVTFLIHDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG E + ++ + + AYP+L I++ ++ E+E+F Sbjct: 299 YVLRRILRRAVRHGRLLGQKELFLYKMVKKVVDQFAIAYPDLTANLENIQKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + GK L+G++ FK+YDT+G P ++ ++I RG+A + Sbjct: 359 SNTLDQGIQLVNEQIEMALQAGKSS-LDGEITFKMYDTYGFPYELTEEICNERGIA-VSQ 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +K+G T+F GY +E K+ Sbjct: 417 EEFLAKMEEQKEKARSARAVIMEKGQDSFIEEFYDKHGVTEFTGYHS------TEEKAKL 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + D T + ++FD+TPFY E+GGQ+GD G Sbjct: 471 LNIRQKEDGT-------------------------LLLIFDKTPFYGESGGQVGDHGSIS 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + ++ DV+K+ E IF H V G LT+D + R +S NH+ATHLLH Sbjct: 506 SEAFQGKVLDVKKQKE-IFTHIVEVVSGEAEEGKEYTLTVDSKYRAAVSKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV Q GS + + LRFD +H + +T +++ +E+ VN+ I++ + V Sbjct: 565 ALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIQEVEERVNEKISEAIAVEVSHKT 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A A GA L G KY D VRVV V S+ LCGG HV + G I L IVSE Sbjct: 625 MEEAKACGAMMLFGDKYGDVVRVVHVP-----GFSTELCGGIHVENIGHIGLFKIVSEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLI 773 I AG+RRIEA TG A + LK A LK ++ +VE++ +E ++ ++ Sbjct: 680 IAAGVRRIEAKTGYEAYRFVEENIGMLKKTAKLLKTEDSLLLEKVEKVLQEEKEKAREIT 739 Query: 774 HAKRKL-QLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K+ + E L H +IADV + +L+ ++D ++ K ++ I++L Sbjct: 740 SLKDKIAKQEAEALYTHALEIADVKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT-- 797 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S +K S + V++ L ++ A +L +++A++ GG GGG+P AQ+GG + +K ++A+ Sbjct: 798 STFEKLSFAVGVSKALTGKYKAGNLVKIAAEIT-GGKGGGKPDFAQAGGKDKSKIEEAME 856 Query: 891 GVASFLKK 898 + +K+ Sbjct: 857 AIKKAIKE 864 >gi|320109036|ref|YP_004184626.1| alanyl-tRNA synthetase [Terriglobus saanensis SP1PR4] gi|319927557|gb|ADV84632.1| alanyl-tRNA synthetase [Terriglobus saanensis SP1PR4] Length = 889 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 357/921 (38%), Positives = 525/921 (57%), Gaps = 92/921 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL FF+ H + SSSL+P NDPTL+FTN+GM FK++F G EK Y T Sbjct: 7 SQIREDFLRFFETKEHRRVHSSSLVPHNDPTLLFTNAGMNQFKDVFLGAEKRSYVRAATS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QKCVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT F +D+ Sbjct: 67 QKCVRAGGKHNDLENVGFTRRHHTFFEMLGNFSFGDYFKRDAIAYAWELLTAAEWFGIDK 126 Query: 123 RRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 +LY+T+++ D+EA + W + +G+ ++I ++ DNFW M ETGPCGPCSEI+ Sbjct: 127 SKLYVTIFEGDAQVPRDDEAEQFWIE-AGVPKERIFEMSAKDNFWQMGETGPCGPCSEIY 185 Query: 177 FDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQ-----NKQERFILPKMSIDTG 227 +D G PG+ + + +RY+EIWNLVFMQF++ + LPK SIDTG Sbjct: 186 YDLG-LEAADEPGTDKPFPLDEQRYVEIWNLVFMQFDRMIDAATGGAQLTPLPKPSIDTG 244 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287 MGLER+A VLQ T+N++ DLF LI + +++G ++ + ++I DH R+++FLI+ Sbjct: 245 MGLERIAAVLQGVTSNFETDLFTPLIAKAAELSGATDLTSSSL--KIIADHARAATFLIS 302 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG++P NEGRGYVLR+I+RR + + RLLG +P M ++ A+ EM AYPELI + + Sbjct: 303 DGVIPLNEGRGYVLRKILRRGIRHGRLLGQEQPFMHEMVYAVRDEMQVAYPELIDSAERV 362 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + + +E+++F +TL G LS + + + +G AF+LY+T G+PLD M D Sbjct: 363 AKVVLAEEQQFARTLQLG-------LSQMTNETLSSGAAAFRLYETFGMPLDFMTDAARD 415 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ D+ F A EE++ RARA G GS + F + T F+GY LR Sbjct: 416 AGIE-FDLPGFEAAKEEEQQRARASWRG-GSQKSASPAF---RELAKTDFLGYGGLR--- 467 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 +GV+ V A+V+ G V+ G + EVV D T FYA++GGQ Sbjct: 468 -----------------ADGVT--VLALVKDGVGVQALHPGDEGEVVLDATSFYADSGGQ 508 Query: 528 LGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 +GD G G ++ K +G+F H +V+R I + L ++ + R Sbjct: 509 VGDVGWLYPTDHTGALAEVKGCTKPVQGVFAHKVVVKRDISVGD-RLDAVVNGEVRSATI 567 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ THLLH AL +LG+HV Q GS + LRFD +H I +L+ IED VN + Sbjct: 568 RNHTGTHLLHAALREVLGTHVKQAGSLVNSARLRFDFSHFAGIAPEDLQEIEDIVNAQVL 627 Query: 645 QNLPVVTRIMNREDAIAS------GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N TR+ ED A AL G KY D+VRVV + G S+ LCGG H Sbjct: 628 GN----TRVETFEDVPIDVAVHEFKATALFGEKYGDKVRVVKI-----GDFSTELCGGIH 678 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 +TGEI LL +V ESS +GIRR+EA+TG + +D + +A+ +V G+ + Sbjct: 679 TKATGEIGLLKLVGESSAASGIRRVEAVTGTGSLKEFR-RDFDVARVAT--QVIGGSSLP 735 Query: 759 RVEEIW-------EEYRKL--QLIHAKRKLQLNVEDLSCH---KIADVNFMSHIISEVDS 806 E + EE +KL +L A+ K + + ++ + ++ +S +D Sbjct: 736 PAEALQQKLSAQDEELKKLRRELDQARMKSASSATANAAESAVEVKGIKVLAQRVSGLDR 795 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD-LARLSAKVLGG 865 +++ ++D L+ +I G+++L +++ K +++ VT+DL + A + L+AKV Sbjct: 796 NQMRQLVDNLRTQIGEGVVVLGMATEDGKVALIAGVTKDLTSKVQAGKVVGALAAKVG-- 853 Query: 866 GGGGGRPHMAQSGGPNGNKAD 886 G GGGRP +A++GG + ++ D Sbjct: 854 GKGGGRPDLAEAGGSDPSQLD 874 >gi|313885025|ref|ZP_07818777.1| alanine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8] gi|312619716|gb|EFR31153.1| alanine--tRNA ligase [Eremococcus coleocola ACS-139-V-Col8] Length = 883 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 345/902 (38%), Positives = 513/902 (56%), Gaps = 70/902 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF + H++ PS+SLIP NDPTL++ NSG+ K F G E P +T Sbjct: 7 AQIRQMYLDFFAEKNHDVKPSASLIPINDPTLLWINSGVATLKKYFDGTEVPANPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QKC+R ND++NVG T RHHT FEMLGN+S G YFKE AI AW+ LT K + Sbjct: 67 QKCIRT----NDIENVGVTARHHTLFEMLGNWSIGDYFKEEAIAWAWEFLTSDKWMGFEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 LY T Y ED + ++WK+ + D ++ + DNFW + GPCGP +EIF+D+GE Sbjct: 123 ELLYATYYPEDTDTPEIWKQQPNFNPDHLVPV--EDNFWDIG-AGPCGPDTEIFYDRGEA 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ER++EIWNLVF +F LP ++DTGMGLERM + Sbjct: 180 YNNLAEDDPENYPGG--ENERWLEIWNLVFSEFNHMPDDTYQPLPNKNVDTGMGLERMTS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +I+ E +T G+ YE G N V+ +VI DH+R+ SF I+DG LP Sbjct: 238 VVQDTPTNFETDLFLPIIKQIEGLTDGIVYEEAGANKVSFKVIADHIRAVSFAISDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGY+LRR++RR++ + R LG + + L+P + MG Y EL + ++ L Sbjct: 298 SNEGRGYILRRLIRRSVMHGRRLGIKDKFLAQLVPTIAQIMGQFYSELQEKVEFVQSVLA 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF +T++ G L ++ L +E+ + GD AFKLYDT G PL++ Q+ RG Sbjct: 358 SEEDRFHETIEAGEDHLVSIIESLKTEEVYEIPGDQAFKLYDTFGFPLELTQEEAELRGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 + +D F +E+QR RAR S + F+ + + F+GYD L + Sbjct: 418 S-VDTQGFEAEMEQQRQRARQARSKEESMNVQSTVFT--DIHTEYDFVGYDSLVSN---- 470 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + VKAIV + E V+ Q V F+++PFYAE GGQ+ D Sbjct: 471 -------------------ATVKAIVFEDESVQNLAKNQIGWVFFNRSPFYAEMGGQIAD 511 Query: 531 TGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G + G+ ++ DVQK G +H + + S L +D ++R + NH+A Sbjct: 512 KGLIMDGNDEVGRVLDVQKAPNGQAMHKVEALTMPINLDQSYTLQVDPKHRTLTNQNHTA 571 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG H +Q GS + PD LRFD +H +T+ E+K++ED VN I +L V Sbjct: 572 THLLHRALKDVLGDHANQAGSYVGPDRLRFDFSHFGKMTAEEIKAVEDKVNAFIEASLAV 631 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T M ++A A GA AL G KY D VRVV++ E S LCGGTHV++T +I Sbjct: 632 NTTEMPIDEAKALGAMALFGEKYGDVVRVVNISNE-----SIELCGGTHVANTNQIGTFK 686 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR 768 ++SE+ I AGIRRIEA+TGQ A ++ Q+ L + LKVSQ + +V R++++ E Sbjct: 687 LLSETGIGAGIRRIEALTGQAAFNYYRDQEAILHQIQDRLKVSQTDMLVNRIDQMQAE-- 744 Query: 769 KLQLIHAK-RKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKI 820 L+ HA+ LQ V + K+ D V++++ + + + ++ + D ++K Sbjct: 745 -LKEAHAQIESLQAKVMQAASDKLFDEVKEVGAVSYIALSLKDQSADAMRQLGDIWKQKA 803 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + ++++ + E KA++L++ + +D+ A DL + AK + GGGGG+P MAQ+GG Sbjct: 804 NADLLIVAADNGE-KANLLVLANDQAIDKGVKAGDLIKALAKYV-QGGGGGKPQMAQAGG 861 Query: 880 PN 881 N Sbjct: 862 KN 863 >gi|228475198|ref|ZP_04059924.1| alanine--tRNA ligase [Staphylococcus hominis SK119] gi|228270809|gb|EEK12211.1| alanine--tRNA ligase [Staphylococcus hominis SK119] Length = 876 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 340/919 (36%), Positives = 510/919 (55%), Gaps = 77/919 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SDIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDKWMGMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA++LW + GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 EKLYVTIHPEDVEAYRLWHEDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 I----------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 PGG E ERY+E+WNLVF ++ LP +IDTGMGLER Sbjct: 180 YGQNDPAEEMYPGG------ENERYLEVWNLVFSEYNHNKDHTYTPLPNKNIDTGMGLER 233 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 M ++ Q NY+ DLF +I+ E ++G KY NN V +VI DH+R+ SF I+DG Sbjct: 234 MTSISQNVRTNYETDLFMPIIEEVEHISGKKYLENNEQDVAFKVIADHIRTISFAISDGA 293 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LPANEGRGYVLRR++RRA+ +++ LG EP M L+ + M YP + + I+ Sbjct: 294 LPANEGRGYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKSDFIKRV 353 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++SE+ERF +TL G+ +L+ +++ + +NG AFKLYDT+G P+++ +++ G Sbjct: 354 IKSEEERFHETLQEGVSILNQLITQAKESTHQINGSDAFKLYDTYGFPIELTEELASQEG 413 Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D+ +F +E+QR+RAR A + ++ K +QF+GY+ Sbjct: 414 IT-VDMATFEAEMEQQRTRAREARQSSQSMQVQSDVLKNINTK---SQFVGYE------- 462 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T +I+ ++ G+ V A +G+ V + +TPFYA +GGQ+ Sbjct: 463 ----------------TTDYQTILTDLIYNGKTVTSAEAGETVYFILKETPFYAVSGGQV 506 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G D + + +V K G +H IV+ G + + ++ + R+ + NHS Sbjct: 507 ADKGTVGNDQFAIAVQEVTKAPNGQNLHQGIVQFGQVSVNSHVDAAVNKEERKDIQKNHS 566 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL ILG HV+Q GS + + LRFD +H P+T E+ +E VN+ I + + Sbjct: 567 ATHLLHAALKEILGEHVNQAGSLVESERLRFDFSHFGPMTEEEIDQVERRVNEEIWRGIS 626 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + M ++A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 627 VHIQEMPIQEAKEMGAMALFGEKYGDIVRVVNM-----APFSIELCGGIHVDNTAEIGLF 681 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEY 767 IVSES AG+RRIEA+TG+ A + K S+ LKV S V +V +I E Sbjct: 682 KIVSESGTGAGVRRIEALTGKAAFLYFEDIQNKFNSVKEQLKVKSDKQVYDKVVQIQENE 741 Query: 768 RKLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQK 818 ++L +R ++ N+ED ++ +N + +EV+ KE++ MD + Sbjct: 742 KQLNKQLEQRNKEITSLKMGNIED----QVEMINGFKVLATEVEVSNPKEIRQTMDDFKS 797 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K Q II+L G E K S++ V ++L + A D+ + A ++ GG GGGRP MAQ G Sbjct: 798 KKQDTIIILAGHVGE-KVSLIAAVPKELTSQVKAGDIIKNMAPIV-GGKGGGRPDMAQGG 855 Query: 879 GPNGNKADQAIAGVASFLK 897 G +++ + ++K Sbjct: 856 GTQPENISESLRFIKDYIK 874 >gi|254457078|ref|ZP_05070506.1| alanyl-tRNA synthetase [Campylobacterales bacterium GD 1] gi|207085870|gb|EDZ63154.1| alanyl-tRNA synthetase [Campylobacterales bacterium GD 1] Length = 849 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 350/908 (38%), Positives = 510/908 (56%), Gaps = 84/908 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF+ H+ + S+ L+P +D +L+F N+GMVPFK+IFTG+ +P T+ Q Sbjct: 3 IREEYLKFFESKNHDRIASAPLVP-DDASLLFNNAGMVPFKSIFTGEIPRPANPRATSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ L +L Sbjct: 62 TCLRAGGKHNDLENVGHTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITEVIKLPVDKL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 ++TV++ D+EA LW+K +S D+I+R+ +DNFW M +TGPCGPCSEIF+DQG E Sbjct: 122 WVTVHESDDEAELLWQK--HVSKDRILRLGDDDNFWQMGDTGPCGPCSEIFYDQGAENFS 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + +NY Sbjct: 180 GEEDYLGGDGDRFLEIWNLVFMQYEKSADGTMTELPKPSIDTGMGLERVVAIKEGALSNY 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 LF +I +++ G +YE + ++RVI DH+R++ FL+A GI +NEGRGYVLRRI Sbjct: 240 GSSLFMPIIVDVQKLIGKEYEYVSGASYRVIADHIRTTVFLLAQGINFSNEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG+ E M L+ + MG Y L ++E + E+ RF KT++ Sbjct: 300 LRRAVRHGYLLGFREAFMYKLVDTVVEIMGGEYDYLTVKATAVKEQIELEEARFFKTIES 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ L + + L E +G+VAFKLYDT G PLD+ +D+L + L +D F + + E Sbjct: 360 GIALFEEEV--LSTKETFSGEVAFKLYDTFGFPLDLTEDMLKGKNLK-LDSAKFEELMLE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 QR+RA+A G G T + L EK+G F+GY+ + S C+ Sbjct: 417 QRTRAKAAWKGSGDADTHGDFKELLEKFGENTFVGYEFMAHS----------CK------ 460 Query: 485 TNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 V+A++ + + V K V+ D TPFYAE+GGQ GD G G ++ Sbjct: 461 -------VQALLDENFKSVSSLSPDTKGWVLLDITPFYAESGGQTGDCGELEGFA---KV 510 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ---NRRQLSINHSATHLLHHALSTI 600 D +K F + + ++ E+ + +D + +R +++ +HSATHLLH L + Sbjct: 511 EDTRK-----FFGLNLSQISVI-DELKIGTVVDAKVDISRNEITKHHSATHLLHAILYDV 564 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LG H+SQ GS + D LRFD +H K +T EL IE VN+ + + +P T++M EDA Sbjct: 565 LGDHISQAGSLVESDRLRFDFSHPKALTQTELVEIETRVNNDVLRAIPANTQVMGIEDAK 624 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 SGA A G KY D VRVVS + S CGG HV +T I I ES + AG+ Sbjct: 625 NSGAKAQFGEKYGDEVRVVSFDRA-----SVEFCGGVHVDNTANIGSFIITKESGVSAGV 679 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+ GQ A + Q +SL V+E+ E + L ++ +L+ Sbjct: 680 RRIEAVCGQAAYKYFCEQ----RSL--------------VKEVEAEVKNLDVLAGISRLK 721 Query: 781 LNVEDLSCH------------KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 N+ +L ++N ++ ++ E+ S ++K +D L+ + + ML Sbjct: 722 SNIAELKTELKEAQESSKVEITANEINGVAVVVEELASGDIKEKIDELKNQNEKLCAMLF 781 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + +K VLI D A D + A +L GGGGGGRP AQ+GG + K +A Sbjct: 782 QVKGDK---VLIAAGIKNADA-KAGDWIKEIAPIL-GGGGGGRPDFAQAGGKDKTKLPEA 836 Query: 889 IAGVASFL 896 F+ Sbjct: 837 KVEALKFI 844 >gi|327402220|ref|YP_004343058.1| alanyl-tRNA synthetase [Fluviicola taffensis DSM 16823] gi|327317728|gb|AEA42220.1| alanyl-tRNA synthetase [Fluviicola taffensis DSM 16823] Length = 871 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 360/925 (38%), Positives = 512/925 (55%), Gaps = 97/925 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V IR F +FF GH+++PS+ ++ NDPTLMFTN+GM FK+ F G P + V Sbjct: 3 VHEIRKQFFDFFASKGHQIVPSAPMVVKNDPTLMFTNAGMNQFKDFFLGNAVPKNRRVAN 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT+ + + + Sbjct: 63 SQKCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKEEAITWAWELLTEVYKIPKD 122 Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RLY+TV++ +D+E++ +WK+ ++ D+II + DNFW M +TGPCGPC+EI Sbjct: 123 RLYVTVFEGDEKDGVPKDQESYDIWKRF--IAEDRIIMASKKDNFWEMGDTGPCGPCTEI 180 Query: 176 FFDQGECIPGGLPGSSEEGERY--------IEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 D + E+G++Y IEIWN VFMQF ++ LP +DTG Sbjct: 181 HVDNRPAT----ERAKEDGKKYVNEDHPQVIEIWNNVFMQFNRKADGSLEPLPATHVDTG 236 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFL 285 MGLER+A LQ+KT+NYDIDLF+ LIQ EQV+G KY N + RVI DH+R+ +F Sbjct: 237 MGLERLAMTLQDKTSNYDIDLFQTLIQHMEQVSGKKYGENETTDIALRVIADHVRAIAFS 296 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG LP+N G GYV+RRI+RRA+ Y + LG EP + L L MG + ELI+ Sbjct: 297 IADGQLPSNTGAGYVIRRILRRAVRYGYQTLGLKEPFLSGLSVVLGKVMGDPFSELIKQG 356 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 L+E+ +R E+ F +TL++GL +D +++ K + IL G F+LYDT G P+D+ Sbjct: 357 ELVEKVIREEELSFFRTLEQGLKRMDNLIAQARKTRETILQGPAVFELYDTFGFPIDLTS 416 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 I L +D F+ L++Q++R+RA + W LK K +F+GYD Sbjct: 417 LIARENKLL-VDEDGFDTELQKQKARSRA-----ATSIETDDWVVLK-KDSEEEFVGYDH 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L + + + RKV ++ ++VF+ TPFYA Sbjct: 470 LTTTVEIVKYRKVKQKQRSF----------------------------YQLVFNLTPFYA 501 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ+GDTG L I D KK G+ VH +V+ + + ++ ++RR Sbjct: 502 EGGGQVGDTGTISNANESLTIFDT-KKENGLIVH--LVDELPEKIDGQFTARVNEESRRL 558 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NHSATHLLHHAL T+LG+HV Q GS + P+ LRFD +H +T E+ IE V D Sbjct: 559 SASNHSATHLLHHALRTVLGAHVEQKGSLVNPNYLRFDFSHFSKVTDEEMAKIEAIVIDG 618 Query: 643 IAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I QNL + +R + + A GA AL G KY D VRV +++ D S LCGGTHV + Sbjct: 619 IRQNLSLEESRNVPIDAAQEMGAMALFGEKYGDTVRV--IKFGD----SIELCGGTHVQN 672 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG+I L I SES++ AGIRRIEAIT + Q+ KLKS+ LK + +V VE Sbjct: 673 TGQIGLFKIQSESAVAAGIRRIEAITNVAVEGYYADQESKLKSVNELLK-NPKDVSKAVE 731 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKK 819 + LI +LQ VE+ K+ + + IIS+ D L +++D Sbjct: 732 D---------LISKNNQLQKQVENFKKEHAKLVKADLKTKIISKGDFSYLDALIDLNAGS 782 Query: 820 IQS----------GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGG 867 ++ + ++G +E K ++ ++V E L+ +NA +L + A ++ GGG Sbjct: 783 VKDILFQLKGEVPNLFAVIGSKEEDKCAISVLVDESLVSSKGWNAGNLVKSVASLIQGGG 842 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGV 892 GG +GG N N +AI V Sbjct: 843 GGQAFFAT-AGGKNANGLKEAIEKV 866 >gi|270294506|ref|ZP_06200708.1| alanyl-tRNA synthetase [Bacteroides sp. D20] gi|270275973|gb|EFA21833.1| alanyl-tRNA synthetase [Bacteroides sp. D20] Length = 872 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 346/927 (37%), Positives = 519/927 (55%), Gaps = 96/927 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSAEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E + GS +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVSGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G KY + + + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGKKYGEDEKSDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG+AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGAAYPELDAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LI + ++ E++ F +TL+ G+ LL+ ++ GK+EI +G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLEKTMADAKSTGKNEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ DI F+ +++Q+ RAR ++ + +G W +LKE G T+F+GY Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAIETGD----WITLKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + + Q+ + + ++V D+TPF Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDKTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVVDT-KKENNLPIH--ITKKLPEHMEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695 I N+P+ R + E+A GA AL G KY D VRV+ SVE+ CG Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFGSSVEF----------CG 666 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS--- 752 GTHV++TG I ++ I+SESS+ AG+RRIEA TG R + ++ L L + + Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEELMNTIEDTLHDLKALFNNAPDL 726 Query: 753 QGNVVGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 G + ++E E++ K + K +L NV++++ K+ + F + + +E Sbjct: 727 AGTIRKYIDENAGLKKQVEDFMKEKEAQLKERLLKNVQEVNGVKV--IKFCAPLPAET-- 782 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865 +K++ L+ +I + + G E K + ++++++L+ A +L + +AK++ Sbjct: 783 --VKNIAFQLRGQITENLFFVAGTEAEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+PH A +GG N + + AI V Sbjct: 840 GGGGGQPHFATAGGKNADGLNAAIDKV 866 >gi|239617978|ref|YP_002941300.1| alanyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1] gi|239506809|gb|ACR80296.1| alanyl-tRNA synthetase [Kosmotoga olearia TBF 19.5.1] Length = 873 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 346/918 (37%), Positives = 516/918 (56%), Gaps = 82/918 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +FL+FF+ H +LPS+SLIP NDP LMFT +GMVPFK IF G+ +P Y V T QK Sbjct: 9 IRESFLKFFESKKHTILPSASLIP-NDPQLMFTVAGMVPFKPIFWGKIEPTYPRVATCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ + + +L+ Sbjct: 68 CVRT----VDIDNVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWAWEYITEVLKIPEDKLW 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGE---- 181 ++VY +D+EA+++W+ G+S +I+R+ +DN+W A TGPCGP SEIF D G Sbjct: 124 VSVYHDDDEAYEIWRNNVGISEKRIVRLGKDDNWWGPAGPTGPCGPSSEIFVDTGRTKDC 183 Query: 182 -----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 C P G R++E WNLVF ++ L K +IDTG+GLERMA + Sbjct: 184 PDVENCSPACDCG------RFLEFWNLVFTEYNMDGDGNLTRLKKKNIDTGLGLERMAAI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q ++N++ D+FK +++ E + +KY + V+ RVI DH R+ +FLI DG+LP+N Sbjct: 238 MQGVSSNFETDMFKPIVERIEGLLNVKYGVSDKSDVSIRVIADHSRAITFLITDGVLPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRIMRRA+ + LLG ++P + + + +G YPE+ + L+EE E Sbjct: 298 EGRGYVLRRIMRRAIRHGSLLGSSKPFLYKIPEVVVVTLGDVYPEIKEKLSLVEEITLKE 357 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF T + G L ++ K L+G+ F L+DT+G L+++++I+ + L +D Sbjct: 358 EERFLTTFESGTKRLWQIVE---KKNRLDGEDLFLLHDTYGFHLELVEEIVAEKNLP-LD 413 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F +E+QR RAR + + + E G T+F+GY+ L Sbjct: 414 KEGFKALMEQQRERARKAAGNVEYEKDSSRYRKAYEIIGGTKFVGYEKL----------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V + + I++ +I EE G+K E++FD TPFY E GGQ+ D G Sbjct: 463 ------------TVKTKIAHILKDEKITEELSKGEKGELIFDITPFYPEKGGQVADRGII 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 ++ V + + VH +V+ G +++ L +D +NRR + NH+ATHLLH Sbjct: 511 KTAEGFAEVEHVFIPFQDLIVHRVLVKSGKIKSGDLATLIVDKENRRSTARNHTATHLLH 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ILG HV Q GS + + LRFD +H + E++ IE+ VN I + +PV Sbjct: 571 AALRKILGEHVKQAGSLVEAERLRFDFSHYTALDKEEIQKIEELVNRKILEAIPVDVAEK 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+ AL KY DRVRVVS+ G S LCGGTHV +TGEI L IVSES Sbjct: 631 SFEEVKNEDVVALFQEKYGDRVRVVSI-----GDFSKELCGGTHVKNTGEIGLFKIVSES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-------NVVGRVEEIWEEY 767 S+ AG+RRIEAITG ++ + ++ L + L+V Q N+ G++++ +E Sbjct: 686 SVSAGVRRIEAITGLKSLEKMTELMNLVEELRAVLEVPQEAFVEKIINLNGKLKDQAKEL 745 Query: 768 RKL--QLIHA------KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++L +L+ +RKL L+ D ++ ++ +++ D L +K Sbjct: 746 KRLKEKLLSGEGASSLERKLTLD----------DAQVLARVVENTSMDVVRNTADVLMQK 795 Query: 820 IQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + G+++L E K ++ V+++L ++ A DLAR A L GGGGGGRP AQ+G Sbjct: 796 LGKGVVILFNRMPESGKVVFVVKVSKELQQKYRAGDLARKIATEL-GGGGGGRPDFAQAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + + I + F Sbjct: 855 GKKIERVEWVIKNLEKFF 872 >gi|327439562|dbj|BAK15927.1| alanyl-tRNA synthetase [Solibacillus silvestris StLB046] Length = 890 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 344/922 (37%), Positives = 513/922 (55%), Gaps = 71/922 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L FF++ GH + PS+ L+P NDP+L++ NSG+ K F G+ P +T Sbjct: 9 SEIRRLYLNFFKEKGHHIEPSAPLVPINDPSLLWINSGVATLKPYFDGRIIPDNPRITNA 68 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ +I AW+ LT K D Sbjct: 69 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKESIHYAWEFLTDPKWMGFDP 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L +T++ ED+EA+ +W G+ +++IR+ NFW + E GP GP SEIF+D+GE Sbjct: 125 EKLSVTIHPEDQEAYDVWHNEIGIPKERLIRL--EGNFWDIGE-GPSGPNSEIFYDRGEE 181 Query: 183 IPGGLPG----SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G P + E ERY+EIWNLVF QF LPK +IDTGMGLER+ +V+Q Sbjct: 182 YGVGAPEEEMYTGGENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQ 241 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRSSSF 284 N+D DLF +I+ +E Y+ + V+ +VI DH+R+ +F Sbjct: 242 NVPTNFDTDLFMPIIEKTETFANRTYKRPHEVDLNEIFGSTEDVNTPFKVIADHIRTVAF 301 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGYVLRR++RRA+ YA+ +G +P M L+P + M YP++ + + Sbjct: 302 AIGDGALPSNEGRGYVLRRLLRRAVRYAKKIGIEKPFMFELVPTVGEIMHDFYPQVKEKE 361 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVL-SHLGKDE-ILNGDVAFKLYDTHGLPLDIMQ 402 I+ +++E+ RF +TLD GL + + V S K E ++ G AF+LYDT G P+++ + Sbjct: 362 AFIQRVIKNEEVRFHETLDGGLAIFNEVAESQKAKGETVIPGADAFRLYDTFGFPIELTE 421 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + G+ +D F ++E+QR RAR + S + ++ +L ++ + FI YD Sbjct: 422 EYAEEVGMT-VDQEGFEASMEQQRERARNARADVDSMQVQNEVLSNLTQQ---STFI-YD 476 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L S+ V AIV G+ A G++ V+ +TPFY Sbjct: 477 ALEA-----------------------SAKVAAIVVNGQETSTASEGEEALVILSETPFY 513 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE GGQ+ DTG DG + DVQK G +H +VE G + ++ R+ Sbjct: 514 AEMGGQIADTGIIKADGFTAIVKDVQKAPNGQPLHTVVVESGEMNVGDIATAKVEEAKRK 573 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHL+H AL +LG HV+Q GS + PD LRFD +H T EL +E VN+ Sbjct: 574 LILKNHTATHLMHRALKDVLGDHVAQAGSYVGPDRLRFDFSHFGAATKEELAQVERAVNE 633 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +++ VV + M+ + A A GA AL G KY D VRVV+V +S LCGG HVS Sbjct: 634 KIWEDIEVVIQEMDIDSAKAMGAMALFGEKYGDVVRVVAV-----SDYSIELCGGLHVSR 688 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 + EI + IVSES I AG RRIEA+TG+ A + ++ L A LK + +V RV Sbjct: 689 SSEIGIFKIVSESGIGAGTRRIEAVTGKAAYEAIKEEEAILNEAAGLLKSNAKDVATRVA 748 Query: 762 EIWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + +Y++LQ L Q + KI DV ++ + D+ +L+ +MD L Sbjct: 749 TLQADYKELQRENDSLSQKIANAQAGAVLDAAQKIGDVTVLATRVEAKDNNQLRQMMDDL 808 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K++S +I+L + + K + VT+D++ ++A ++ + A+ GG GGGRP MA Sbjct: 809 KEKMESAVIVLGAVDGD-KVMLCAGVTKDIVGGNYHAGNIVKQVAEAC-GGKGGGRPDMA 866 Query: 876 QSGGPNGNKADQAIAGVASFLK 897 +G + +K + A+ V +K Sbjct: 867 MAGAKDASKLEDALNAVYEHVK 888 >gi|257082652|ref|ZP_05577013.1| alanyl-tRNA synthetase [Enterococcus faecalis E1Sol] gi|256990682|gb|EEU77984.1| alanyl-tRNA synthetase [Enterococcus faecalis E1Sol] Length = 880 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 357/921 (38%), Positives = 527/921 (57%), Gaps = 79/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF+D+GE Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + K + L+G + FKLYDT G P+++ +++ GL Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +E QR RAR A S G + +K + ++F+GY Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT+ V I+Q +V EA +G E++F +TPFYAE GGQ+ Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509 Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D+G + + DV+K G F+H V + ++ L +D + R ++ NH Sbjct: 510 DSGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + + Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I + Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740 Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817 ++ K QL N + K + D+N + +I ++V+ K +L+ + D + Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875 +K S +++L ++++K S+L +T+D+ + A DL + ++ KV GGGGGRP MA Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q+GG N A+A V ++L Sbjct: 857 QAGGKNPAGIADALAEVENWL 877 >gi|302386453|ref|YP_003822275.1| alanyl-tRNA synthetase [Clostridium saccharolyticum WM1] gi|302197081|gb|ADL04652.1| alanyl-tRNA synthetase [Clostridium saccharolyticum WM1] Length = 879 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 350/891 (39%), Positives = 513/891 (57%), Gaps = 50/891 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ H + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRRMFLEFFESKEHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI +W+ LT LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDEAIHWSWEFLTGVIGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY ED+EAF++W K G++ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLEDDEAFEIWNKKIGIAPERIFRFGKADNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + + +RY+E+WN VF QFE L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGSPDCTVGCDCDRYMEVWNNVFTQFENDGHGNYEELAQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L+ + +Y+ N V+ R+I DH+RS +F+I+DGI+P+NEGRGY Sbjct: 241 SIFDVDTIKALLNRVAALARTEYKKNADVDVSLRLITDHVRSCTFMISDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + YPEL + K +I + L E+++F Sbjct: 301 VLRRLLRRAARHGRLLGIEGKFLADLSTTVIELSKDGYPELEEKKAMILKVLTQEEDKFN 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + K + IL+G+ AFKLYDT+G PLD+ +IL + G+D Sbjct: 361 KTIDQGLAILGELEEEMVKKGETILSGENAFKLYDTYGFPLDLTLEILEEKNF-GVDEEG 419 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A+++QR AR A G ++ S+ T+FIGYD K++ Sbjct: 420 FKAAMQKQRETARNARKTTNYMGADVTVYQSIDPAI-TTEFIGYD------------KLI 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 C + LT ++VE G+ +V +QT FY GGQ GD G + Sbjct: 467 CDSKILVLTTDT-----------DLVEALTDGETGTIVTEQTVFYGTMGGQQGDVGYIVS 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 D ++ + G H + +G+L++ + L + NR+ NHSATHLL A Sbjct: 516 DRGEFKVEETIHLQGGKVGHVGKMAKGMLQSGDVVTLKVCEGNRQNTGKNHSATHLLQKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L T+LGSHV Q GS + D LRFD TH +T E++ +E VN+ I ++LPV T IM Sbjct: 576 LRTVLGSHVEQAGSFVDGDKLRFDFTHFSAMTPEEIRQVETLVNEKIKESLPVKTEIMTL 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 EDA SGA AL G KY D VRVV + G S+ LCGGTH+++TG I I+SE+ I Sbjct: 636 EDAKKSGAMALFGEKYGDTVRVVKM-----GDFSTELCGGTHINNTGVIGSFKILSETGI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG + +++L A K + ++E + +E + L + K Sbjct: 691 AAGVRRIEALTGDGLMHYYQETEKELHEAAKAAKTMPSALTSKIESLLDEIKALHSENEK 750 Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L + L ++ V ++ + +VD L+++ D L++K+ G+I++ I Sbjct: 751 LKSRLAKDSLGNVMDQVKEVKGVKILATKVMDVDMNGLRNLGDQLKEKLGEGVIVIASI- 809 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ K +++ VT++ + +A +L + A ++ GGGGGGRP+MAQ+GG N Sbjct: 810 QDDKVNLMAAVTDEAQKKGAHAGNLIKAIASLV-GGGGGGRPNMAQAGGKN 859 >gi|187778850|ref|ZP_02995323.1| hypothetical protein CLOSPO_02445 [Clostridium sporogenes ATCC 15579] gi|187772475|gb|EDU36277.1| hypothetical protein CLOSPO_02445 [Clostridium sporogenes ATCC 15579] Length = 879 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 344/916 (37%), Positives = 528/916 (57%), Gaps = 68/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNEIREEYLKFFESKAHFRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPSKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L + Sbjct: 66 CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY+T+Y+ED+EA +W + + +I R+ DNFW GPCGPCSEI FD+G Sbjct: 122 KLYVTIYEEDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177 Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G +SEE ++ +E WNLVF QF++ + L +IDTGMGLERMAT++ Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNRLANPNIDTGMGLERMATIM 236 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295 Q + +++D K ++ +++G Y+ + + ++ R+I DH+RS +F+I+DGILP+NE Sbjct: 237 QNVDSIFEVDTIKAVLDQVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + + LG + +L + YPEL + K I++ ++ E+ Sbjct: 297 GRGYVLRRVLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKKEYIKKVIKLEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T+D G+ +L+ + + + ++L+GD AFKLYDT+G P+++ ++IL +G+ I Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEQGI-NI 415 Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 D FN+ ++EQR RAR+ + +G KI S+ TQF GYD L Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLSIN-----TQFEGYDKLE---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + S V IV+ E + G K +V TPFYAE GGQ+ Sbjct: 467 -------------------LKSKVALIVENEEFKNQIEKGNKGVIVTYNTPFYAEMGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG D + ++ D +K G +H V G + E ++L ++ + R + NH+ Sbjct: 508 GDTGIIYNDSFKAKVIDCKKNISGKILHFVRVLEGKMSLEDEVILKVNEERRNNIRKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH AL ++G HV Q+GS + + LRFD +H + ++ AELK +E VN I + Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEAELKEVEKIVNKEIMKANV 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T++MN E+A GA AL KY D VRVVSV G S LCGGTHV ++GEI + Sbjct: 628 VNTKVMNIEEAKEQGAIALFDNKYKDDVRVVSV-----GEFSKELCGGTHVGNSGEIGMF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766 IVSE+ + AGIRRIEAIT +A ++ ++ LK A LK ++ ++ ++ + + Sbjct: 683 KIVSEAGVAAGIRRIEAITAFKAIEYVDHKNNILKDAAQILKCNEKELLNKLSHQVLEMK 742 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ ++ K KL ED + I + V S + ++D L+ + D ++ +QSG Sbjct: 743 EKEKEIEALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPN 881 +++L G + + K + + T+D + + V ++ + GGGGGGRP MAQ+GG + Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEIAAIAGGGGGGRPDMAQAGGKD 859 Query: 882 GNKADQAIAGVASFLK 897 NK ++AI V + ++ Sbjct: 860 PNKLEEAIKTVETVVE 875 >gi|166030431|ref|ZP_02233260.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC 27755] gi|166029789|gb|EDR48546.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC 27755] Length = 893 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 357/912 (39%), Positives = 527/912 (57%), Gaps = 60/912 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ H L S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 21 VNELRRMFLEFFESKDHLALKSFSLVPHNDKSLLLINSGMAPMKPYFTGQEIPPRRRVTT 80 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD Sbjct: 81 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIHWTWEFLTEVVGLDPE 136 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY+ D+EA+++W K G+ A++I R DNFW +GPCGPCSE+++D+GE Sbjct: 137 RLYPSVYENDDEAWEIWNKEIGVPAERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 195 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + E +RY+EIWN VF QF L + +IDTGMGLER+A V+Q+ Sbjct: 196 GCGKPGCTVGCECDRYMEIWNDVFSQFNNDGHGNYSDLAQKNIDTGMGLERLACVVQDVD 255 Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +DID K H+ S + G+ +E + V+ RV+ DH+RS +F+I+DGI+P+N GR Sbjct: 256 SMFDIDTMKALRDHVCAMSGKHYGIDHETD--VSLRVVTDHIRSVTFMISDGIMPSNSGR 313 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG ++ L + YPEL + K I + E+ + Sbjct: 314 GYVLRRLLRRACRHGRLLGIEGAFLVELAQTVIDGSKDGYPELEEKKDFIFNVIAKEEAQ 373 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KT+D+GL +L + + K + +L+G+ AFKLYDT+G P+D+ +IL +GL D Sbjct: 374 FNKTIDQGLSILADMEEEMKKNGETVLSGENAFKLYDTYGFPIDLTSEILEEKGLT-YDK 432 Query: 416 ISFNQALEEQRSRARA----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 F +A +EQR+++ HS +G ++ L K AT+F+GY+ L Sbjct: 433 EGFEKAQKEQRAKSEGTFGTHSY---TGKDATVYDELDAKL-ATEFVGYENL-------- 480 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +C + V A+ + EIV+ G+K ++ D+T FY GGQ GD Sbjct: 481 ----VCD-----------AKVTALTSEEEIVDALSDGEKGTIIVDKTTFYGTMGGQEGDI 525 Query: 532 GC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G DG + + A H V G+++ ++ + +D +NR + NHSAT Sbjct: 526 GTIKTADG-EFVVENTIHLAGTKIGHVGYVSHGMIKVGDTVSMEVDKENRNLSARNHSAT 584 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL +LG+HV Q GS + + LRFD TH ++ ELK +E+ VN+ IA+ LPVV Sbjct: 585 HLLQAALRQVLGTHVEQAGSYVDAERLRFDFTHFSALSKEELKQVENIVNEKIAECLPVV 644 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + M E+A +GAAAL G KY D VRVVS+ G S CGGTHVS+TG I L I Sbjct: 645 AKNMPIEEARKTGAAALFGEKYGDVVRVVSM-----GDFSVEFCGGTHVSNTGVISALKI 699 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE+ + AG+RRIEA+T + + ++KL+ A+ +K + + ++ + E + L Sbjct: 700 ISETGVAAGVRRIEALTSKGLLKYYDDMEKKLQEAAALVKATPNQLSDKIRHLQAENKDL 759 Query: 771 --QLIHAKRKL-QLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 +L K K+ + + D+S ++ V ++ + +VD L+ + D L++K+ G+I Sbjct: 760 HSELESVKSKMAKEAMGDVSDQVTEVKGVKLIAAKVDDVDMNGLRDLGDQLKEKLGEGVI 819 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L + K + V + E + +A +L + A ++ GGGGGGRP+MAQ+GG N + Sbjct: 820 VLASAAGGKVSLVAMATDEAVKKGAHAGNLIKGIAGLV-GGGGGGRPNMAQAGGKNPDGI 878 Query: 886 DQAIAGVASFLK 897 D AIA V+ L+ Sbjct: 879 DAAIAKVSEVLE 890 >gi|329957545|ref|ZP_08298020.1| alanine--tRNA ligase [Bacteroides clarus YIT 12056] gi|328522422|gb|EGF49531.1| alanine--tRNA ligase [Bacteroides clarus YIT 12056] Length = 873 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 346/923 (37%), Positives = 514/923 (55%), Gaps = 87/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PGS +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G Y N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIGDMSGTAYGKNEQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LI + ++ E++ F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ DI F+ +++Q+ RAR ++ + +G W +L+E G T+F+GY Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAVETGD----WITLQE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D+TPF Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------YQIVLDKTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E L+ +D R Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHLEAPLMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS ++P+ LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGEHVEQKGSLVSPESLRFDFSHFQKVTDEEIRRVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFS------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756 ++TG I ++ IVSESS+ AG+RRIEA TG R L + ++ L + + G + Sbjct: 671 AATGNIGMIKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAPDLSGAI 730 Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 +EE E++ K + K KL N+++++ K+ + F + +I + +K Sbjct: 731 RKYIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKV--IKFCAAMIP---ADAVK 785 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G E K + ++++++L+ A +L + +AK++ GGGG Sbjct: 786 NIAFQLRGEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 844 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + + A+ V Sbjct: 845 GQPHFATAGGKNPDGLNAAVEKV 867 >gi|73748005|ref|YP_307244.1| alanyl-tRNA synthetase [Dehalococcoides sp. CBDB1] gi|83305846|sp|Q3ZWC3|SYA_DEHSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|73659721|emb|CAI82328.1| alanyl-tRNA synthetase [Dehalococcoides sp. CBDB1] Length = 871 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 344/909 (37%), Positives = 529/909 (58%), Gaps = 51/909 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R +L+FF++ GH+ + SSSLIP NDPTL+ T +GMV FK + G KP Sbjct: 1 MFSSDELRENYLKFFEEKGHKRIVSSSLIPHNDPTLLLTTAGMVQFKPYYMGVAKPENPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + + QKC R D+++VG + H T FEMLGNFS G YFK+ AI AW+ +T+ ++ Sbjct: 61 MASCQKCFRT----TDIESVGDAS-HLTMFEMLGNFSIGNYFKKEAIAWAWEYVTQRLNI 115 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQ 179 RL+ITVY +D+EA LWK+ G+ ++I+R+ DNFW A ++GPCGPCSEI +D Sbjct: 116 PAERLWITVYLDDDEAIALWKE-QGVPENRIVRLGAADNFWGPAGDSGPCGPCSEIHYDF 174 Query: 180 GE---CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 G+ C S + G R+ EIWNLVF+QF Q +R LP SIDTGMGLER+ + Sbjct: 175 GQETGCGKADCNPSCKCG-RFCEIWNLVFVQFNQDKSGKRQNLPAPSIDTGMGLERLTIL 233 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPAN 294 +Q K N Y+ D+F +++ + ++G KY + + R++ +H R +FLIADG++P Sbjct: 234 MQSKKNVYETDIFAPIVEKACLLSGRKYGCDAATDRALRIVSEHSRGITFLIADGVIPDK 293 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GRGYVLRR++RRA+ + R LG P ++ + A+ M YPEL + + + E + SE Sbjct: 294 AGRGYVLRRLLRRAVLFGRRLGLERPFLVDMAGAVINRMSGIYPELKKRQTYVLEMIASE 353 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + RF +TL GL LL+ ++ K ++G AFKLYDT+G P+++ +I +GL+ +D Sbjct: 354 EARFSETLATGLELLEEIVRQT-KGGRISGQDAFKLYDTYGFPVEMTTEIAAEKGLS-VD 411 Query: 415 IISFNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 + F +E QR++AR+ + T + +++ T F+GY+L Sbjct: 412 LDGFESEMEIQRTKARSSRKFSFDAAATAEAVKNMRHAE-KTCFVGYELA---------- 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 QK S +K I+ +G V+ G + +V D++PFYAE GGQ+GDTG Sbjct: 461 ---IQK----------STIKDILTEGGTVDSIEEGDEASIVLDESPFYAEMGGQVGDTGE 507 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 I G R ++ + G+F+H V G L+ + I+ + RR ++ NH+ATH+L Sbjct: 508 IITGGGRFEVKNTLHLPNGVFLHQGRVINGCLKISEAATAHINEERRRDIARNHTATHIL 567 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG V Q GS +TPD LRFD +H KP++ E++ +E+ VND I +NLPV Sbjct: 568 QTALREVLGEQVQQRGSVVTPDRLRFDFSHLKPMSKDEMRRVEEFVNDKIRRNLPVYAEE 627 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M A+ G AL G KY DRVRV+ V S+ LCGGTHV+++GEI L I+SE Sbjct: 628 MPYRHALEEGVTALFGEKYGDRVRVLRVGRP---AVSAELCGGTHVTASGEIALFKIMSE 684 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 SS+ AG+RRIEA+TG+ A + + Q + L L+ L+ + ++ E+ EE L+ Sbjct: 685 SSVGAGLRRIEAVTGREAEAFINLQQDSLSELSGMLESTAEESPRKLAELKEEIDTLKKA 744 Query: 772 LIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 + + +R++ + K D V + ++ V++ L+ D L+ K+ SG+I+L Sbjct: 745 VQNLERQMSRGEAEELLSKAEDYKGVKLLVSRMTSVNADTLRETADFLRDKLGSGVIVL- 803 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G E K L +VT DL+ + ++A ++ + +++ GGGGGG+P+MAQ GG + +K D+ Sbjct: 804 GTVTEDKPFFLCMVTPDLIAKGYHAGNIVKKLSQI-AGGGGGGKPNMAQGGGRDKSKLDE 862 Query: 888 AIAGVASFL 896 A+ V + Sbjct: 863 ALQAVKGMI 871 >gi|256853016|ref|ZP_05558386.1| alanyl-tRNA synthetase [Enterococcus faecalis T8] gi|307291365|ref|ZP_07571249.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0411] gi|256711475|gb|EEU26513.1| alanyl-tRNA synthetase [Enterococcus faecalis T8] gi|306497596|gb|EFM67129.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0411] gi|315030000|gb|EFT41932.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4000] Length = 880 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 360/922 (39%), Positives = 528/922 (57%), Gaps = 81/922 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF+D+GE Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + K + L+G + FKLYDT G P+++ +++ GL Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +E QR RAR A S G + +K + ++F+GY Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT+ V I+Q +V EA +G E++F +TPFYAE GGQ+ Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509 Query: 530 DTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G GD + + DV+K G F+H V + ++ L +D + R ++ N Sbjct: 510 DRGYVKNTAGD-VVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKN 567 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + Sbjct: 568 HTATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEA 627 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I Sbjct: 628 IPVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIG 682 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765 + IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 683 IFKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL-- 740 Query: 766 EYRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDAL 816 ++ K QL N + K + DVN + +I ++V+ K +L+ + D Sbjct: 741 --QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQW 798 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHM 874 ++K S +++L ++++K S+L +T+D+ + A DL + ++ KV GGGGGRP M Sbjct: 799 KQKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDM 855 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 AQ+GG N A+A V ++L Sbjct: 856 AQAGGKNPAGIADALAEVENWL 877 >gi|154497721|ref|ZP_02036099.1| hypothetical protein BACCAP_01697 [Bacteroides capillosus ATCC 29799] gi|150273219|gb|EDN00364.1| hypothetical protein BACCAP_01697 [Bacteroides capillosus ATCC 29799] Length = 890 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 338/908 (37%), Positives = 510/908 (56%), Gaps = 54/908 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL+FF+ GH LPS SLIP ND +L+ NSGM P K FTG+++P VTT Sbjct: 8 LNELREMFLKFFETKGHLRLPSFSLIPQNDASLLLINSGMAPMKPFFTGEQEPPCHRVTT 67 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKC+R G D++N+G T RH T+FEMLGNFSFG YFK+ AI AW+ LT LD Sbjct: 68 CQKCIRTG----DIENIGHTARHGTYFEMLGNFSFGDYFKKEAIHWAWEFLTSPEWVGLD 123 Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RLY +V+ D+EAF++W + G+ A++I + DNFW +GPCGPCSEI Sbjct: 124 PERLYPSVFAGNETTPADDEAFRIWHEEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEI 182 Query: 176 FFDQGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 ++D+GE G PG + + +RYIE+WN+VF QF + L + +IDTGMGLER+ Sbjct: 183 YYDRGERWGCGKPGCTVGCDCDRYIEVWNVVFSQFNNDGENHYTELKQKNIDTGMGLERL 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A V Q+ + +D+D ++ ++T Y V+ RVI DH+RS++F+I DG+L Sbjct: 243 ACVCQDVASLFDVDTVMNITNKVSEITHAHYGETAAKDVSLRVITDHIRSATFMICDGVL 302 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RRA + +LLG EP + + + E YPEL + + I + + Sbjct: 303 PSNEGRGYVLRRLLRRAARHGKLLGVNEPFLYEVCDTVIHENEGHYPELRERQDYITKVI 362 Query: 352 RSEDERFGKTLDRGLVLLDGVLS-HLGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARG 409 R+E+E F +T+D GL + + +LS H K E + +G AFKLYDT+G P+D+ +++ +G Sbjct: 363 RTEEENFARTIDGGLKIFNDMLSGHKEKGEKVFSGADAFKLYDTYGFPIDLTIEMVQEQG 422 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D F +EEQ+ RAR LG + F + TQF+GYD Sbjct: 423 MT-VDQEGFKVLMEEQKVRARKAREALGDLGWAGVEFG--KDVPETQFVGYDHTS----- 474 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +D KV+ A+V + E EE + G + VV D+TPFYAE GGQ+ Sbjct: 475 IDDAKVV-----------------ALVVENEQAEELMPGVEAIVVLDKTPFYAEMGGQVA 517 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + Q+TDVQK G ++H + G+++ ++ +ID + R+ + HSA Sbjct: 518 DHGVITMGDAQFQVTDVQKNKGGKYMHTGKLTGGVIKLGDTVSASIDVKRRKAIMRAHSA 577 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL T+LG HV Q GS + D LRFD TH +T+ EL + VN+ + + V Sbjct: 578 THLLDKALRTVLGDHVQQAGSLVEEDRLRFDFTHFSAMTAEELSQVSAMVNEAVLEGYDV 637 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T ++ E+A GA AL G KY D VRVV + G +S CGGTH+ +T ++ + + Sbjct: 638 HTDVLPIEEAKKKGAIALFGEKYGDTVRVVDM----GEGYSVEFCGGTHLDNTAKVGVFH 693 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I SE S+ +G+RRIEA TG ++ + +KL A+ LK + + E+ E R+ Sbjct: 694 IESEFSVASGVRRIEATTGAQSLKIMNQNQQKLFEAAAVLKAKPSELREKAEQTIAELRE 753 Query: 770 LQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ + K K + + + H + D+ ++ + D+ +L+ + D L+ K + + Sbjct: 754 LRHMVEKFKAKEAAGETERFLMGGHTVGDLKVLTATLPNADAAKLRQMGDMLRDKQPNVV 813 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L ++ K ++ E + A D+ + + + GG GGG+P A GG + K Sbjct: 814 AVLSAVNDGKITFQVVCGKEAVAKGIKAGDIIK-NVTAICGGKGGGKPDSAMGGGFDVLK 872 Query: 885 ADQAIAGV 892 D A+A V Sbjct: 873 LDDALAKV 880 >gi|325570263|ref|ZP_08146129.1| alanine--tRNA ligase [Enterococcus casseliflavus ATCC 12755] gi|325156746|gb|EGC68920.1| alanine--tRNA ligase [Enterococcus casseliflavus ATCC 12755] Length = 880 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 361/927 (38%), Positives = 533/927 (57%), Gaps = 81/927 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT Sbjct: 61 PRMTNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL+ + I+ I DNFW + GPCGP SEIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWAEEVGLTPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173 Query: 177 FDQG-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+G E P PG E ERY+EIWNLVF +F Q LP +IDTGMG Sbjct: 174 YDRGPEFNDVAEDDPENYPGG--ENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286 LERM +++Q N++ DLF +I A ++G G++ ++ +VI DH+R+ SF I Sbjct: 232 LERMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIDAAFLYKLVPIVGEIMESYYPEVLEQQEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V++ + D + L G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRNEEERFHETINEGLDILNQVIAQVKADNQDTLAGQDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 GL +D F Q ++ QR+RARA S+G+ S I ++F+G Sbjct: 412 AEDEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSALLTDIKVD-------SRFVG 463 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L + + ++ Q E + ++VS + +++F +TP Sbjct: 464 YDSLEANSEL------------------------LVIIQDEALHDSVSTGEAKLIFAETP 499 Query: 520 FYAEAGGQLGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ DTG + DG I ++TDV+K G F+H A V + L+ ++ L +D Sbjct: 500 FYAEMGGQVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATV-KAPLQEGVNYFLQVDQ 558 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL +LGSH +Q GS + P LRFD +H +TS EL +E Sbjct: 559 HRRNKIIKNHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQ 618 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN I + LPVVT + + A GA AL G KY VRVV+V S LCGGT Sbjct: 619 IVNQKIWEALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNV-----ADWSIELCGGT 673 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV++T +I + IVSES I AG+RRIEA+T Q A + L ++ +LK++A +K +Q V Sbjct: 674 HVANTEDIGIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEETQLKAIAGIVKSAQLKEV 733 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK-IADVNFMSHIISEV---DSKELKS 811 V + E++ + R+LQ + +L N + K + +VN + I ++V D +L+ Sbjct: 734 VAKTEQLQAQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQ 793 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGG 869 + D ++K S I++L + + K ++L + + ++ A DL + ++ KV GGGG Sbjct: 794 LADQWKQKDHSDILVL-ATANDGKVNLLAAMNKVANEKGLKAGDLIKEIAPKVG--GGGG 850 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 GRP MAQ+GG N A+ A++L Sbjct: 851 GRPDMAQAGGKNPEGITAALETAAAWL 877 >gi|257466745|ref|ZP_05631056.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] gi|315917894|ref|ZP_07914134.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] gi|313691769|gb|EFS28604.1| alanyl-tRNA synthetase [Fusobacterium gonidiaformans ATCC 25563] Length = 866 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 335/902 (37%), Positives = 516/902 (57%), Gaps = 62/902 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF+ H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI +W+ +T+ L + + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIVWSWEFVTEVLGLPKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+W+ TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWIEDCHFPRERIVRMGESENWWAAGPTGSCGPCSEIHVDLGPEY- 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG RYIEIWNLVF ++ + LPK +IDTG GLER+A ++Q K Sbjct: 179 GGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 +NN++ DL L++ + ++T KY + + +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 SNNFETDLLFPLVEEAGRLTNSKYHESPEKDFSLKVITDHSRAVTFLIHDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG E + ++ + + AYP+L I++ ++ E+E+F Sbjct: 299 YVLRRILRRAVRHGRLLGQKELFLYKMVKKVVDQFAIAYPDLTANLENIQKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ + GK L+G++ FK+YDT+G P ++ ++I RG+A + Sbjct: 359 SNTLDQGIQLVNEQIEMALQAGKSS-LDGEITFKMYDTYGFPYELTEEICNERGIA-VSQ 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +EEQ+ +AR+ + + +K+G T+F GY +E K+ Sbjct: 417 EEFLAKMEEQKEKARSARAVIMEKGQDSFIEEFYDKHGVTEFTGYHS------TEEKAKL 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + D T + ++FD+TPFY E+GGQ+GD G Sbjct: 471 LNIRQKEDGT-------------------------LLLIFDKTPFYGESGGQVGDHGSIS 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + ++ DV+K+ E IF H V G LT+D + R +S NH+ATHLLH Sbjct: 506 SEAFQGKVLDVKKQKE-IFTHIVEVVSGEAEEGKEYTLTVDSKYRAAVSKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV Q GS + + LRFD +H + +T +++ +E+ VN+ I++ + V Sbjct: 565 ALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIQEVEERVNEKISEAIAVEVSHKT 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A GA L G KY D VRVV V S+ LCGG HV + G I L IVSE Sbjct: 625 MEEAKVCGAMMLFGDKYGDVVRVVHVP-----GFSTELCGGIHVENIGHIGLFKIVSEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLI 773 I AG+RRIEA TG A + LK A LK ++ +VE++ +E ++ ++ Sbjct: 680 IAAGVRRIEAKTGYEAYRFVEENIGMLKKTAKLLKTEDSLLLEKVEKVLQEEKEKAREIT 739 Query: 774 HAKRKL-QLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K+ + E L H +IADV + +L+ ++D ++ K ++ I++L Sbjct: 740 SLKEKIAKQEAEALYTHALEIADVKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLT-- 797 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S +K S + V++ L ++ A +L +++A++ GG GGG+P AQ+GG + +K ++A+ Sbjct: 798 STFEKLSFAVGVSKALTGKYKAGNLVKIAAEIT-GGKGGGKPDFAQAGGKDKSKIEEAME 856 Query: 891 GV 892 + Sbjct: 857 AI 858 >gi|300770787|ref|ZP_07080665.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861] gi|300762344|gb|EFK59162.1| alanine--tRNA ligase [Sphingobacterium spiritivorum ATCC 33861] Length = 893 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 336/923 (36%), Positives = 520/923 (56%), Gaps = 78/923 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M+N IR FL FF+ H+++PS+ ++ NDPTLMFTN+GM FK+ F G+ +P Y Sbjct: 23 MTN-REIREAFLNFFKSKNHQIVPSAPVVVKNDPTLMFTNAGMNQFKDFFLGEAQPKYSR 81 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + Q+C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+LLT + L Sbjct: 82 IADTQRCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKKEAIEWAWELLTVVYKL 141 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D+ RLY+T+++ +D EA+ WK S +S D+I+ DNFW M ETGPCGPC Sbjct: 142 DKDRLYVTIFEGDDSEGLVKDTEAYDFWK--SWISEDRILLGNKKDNFWEMGETGPCGPC 199 Query: 173 SEIFFD-QGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI +D + E PG S + + IEIWNLVFMQF + LP +DTGM Sbjct: 200 SEIHYDMRTEEERRTTPGQSLVNADHPQVIEIWNLVFMQFNRLKNGSLESLPAKHVDTGM 259 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286 G ER+ +Q K++NYD D+F+ +I Q G++Y + + RV+ DH+R+ SF I Sbjct: 260 GFERLVRAIQGKSSNYDTDVFQPMIAFIAQKAGIQYGADERTDIAMRVLSDHIRAVSFAI 319 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N GYV+RRI+RRA+ YA L + P + L+P L E + ELIQ + Sbjct: 320 ADGQLPSNNKAGYVIRRILRRAVRYAYTFLNFKTPFINELVPLLAKEFEGVFDELIQQQD 379 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +++ + E+ F +TL G+ + S+ + + G+ AF+L+DT+G P+D+ + + Sbjct: 380 FVQKVVLEEEVSFLRTLVTGVQRFE---SYAESNTAVGGEFAFELFDTYGFPIDLTELLA 436 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G+ +D+ F +AL+ Q+ R+RA + + +G W ++ E +F+GYD L+ Sbjct: 437 REKGME-VDMAGFQEALQIQKDRSRA-ATAIDTGD----WVAVSED-DQVEFVGYDNLKA 489 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + RKV + ++ ++V TPFYAE G Sbjct: 490 TTEIVKYRKVTAK----------------------------GKEQYQLVLSVTPFYAEGG 521 Query: 526 GQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GQ+GD+G + + G ++ ITD KK G+ VH ++ E + +D Q R Sbjct: 522 GQVGDSGVLLSESTGEKIYITDT-KKENGLIVH--FTNTLPVQMEGTFEAKVDVQKRLDT 578 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV+Q GS + D LRFD++H +T ELK +ED VN I Sbjct: 579 ENNHSATHLLHAALKEVLGTHVNQKGSLVNADILRFDISHFAKVTEEELKQVEDIVNAKI 638 Query: 644 AQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 +N+P+ R + + A+ SG AL G KY D VRV++ + + S LCGGTHV +T Sbjct: 639 RENIPLKEQRHVPFQQALDSGVTALFGEKYGDYVRVITFDDQ----FSKELCGGTHVKAT 694 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I I+SES++ AG+RRIEAITG + + + + + L L + + V + + Sbjct: 695 GQIGFFKIISESAVAAGVRRIEAITGTKCAAVIREHFDLVHRLGELLH-NPKDFVSTLSK 753 Query: 763 IWEEYRKLQ------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + +E L+ +I L+ ++E +I VNF++ + +++ LK++ AL Sbjct: 754 VIDENSALKKEIEKSIIEKSLALKSDLEQ-KIQQIDGVNFLATQVELPNAEALKTLAYAL 812 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874 + + + + +++G + K ++ +VV++ L NA + R AK + GGGGG+P Sbjct: 813 KGAVDN-LFLVLGADFDGKPNLTVVVSDQLSKERGLNAGTIVRELAKEI-NGGGGGQPFF 870 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 A +GG N AIA ++++ Sbjct: 871 ATAGGKNPEGLPAAIAKAKNYIQ 893 >gi|291297318|ref|YP_003508716.1| alanyl-tRNA synthetase [Meiothermus ruber DSM 1279] gi|290472277|gb|ADD29696.1| alanyl-tRNA synthetase [Meiothermus ruber DSM 1279] Length = 883 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 337/852 (39%), Positives = 494/852 (57%), Gaps = 59/852 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA-- 60 + IR FL+FF+ GH LPS S++P +DPTL+F N+GM P K F G+ KPV+ Sbjct: 2 KTAEIREKFLQFFESKGHLRLPSFSVVPQDDPTLLFINAGMTPLKPYFLGK-KPVFPGHE 60 Query: 61 -----VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 VTT QK VR G D++NVGRTNRH T FEMLGNFSFG YFK+ AI+ AW+ LT Sbjct: 61 GEWYRVTTCQKSVRTG----DIENVGRTNRHQTVFEMLGNFSFGDYFKKEAIEWAWEFLT 116 Query: 116 --KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGP 168 K LD R+Y+T+Y +D+EAF+ W ++ G+ +KI R ++NFW + GP Sbjct: 117 DPKWLGLDPTRIYVTIYKDDDEAFEHWTRV-GVPPEKIHRFDADENFWPQNAPTKGPNGP 175 Query: 169 CGPCSEIFFDQGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 CGPCSEI++D+G + E R++E+WNLVF Q+++++ LPK +ID Sbjct: 176 CGPCSEIYYDRGPAFGSDTWADYYETRESNRFVELWNLVFPQYDRKDGGVLEPLPKPNID 235 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFL 285 TGMGL R+A VLQ+ T+ Y+ D F+ LI ++TG+ YEG + V HRVI +H R+ +F+ Sbjct: 236 TGMGLARVAMVLQDVTDFYETDEFQPLIAKIVELTGISYEGPSSVAHRVIAEHARAVTFI 295 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ++DG+ +N GRGYV+RR++RRA+ + LLG EP M L + MG YPEL + Sbjct: 296 LSDGVHFSNTGRGYVVRRLLRRAVRFGYLLGLREPFMYRLAEVVAQVMGGVYPELKENLE 355 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +++ ++ E+E+F +TL+ G+ LD +L++L + L G AF LYDT+G PLD+ +I Sbjct: 356 GVQKQIKIEEEQFLRTLESGIKRLDAMLANLKPGDTLAGRDAFTLYDTYGFPLDLTIEIA 415 Query: 406 CARGLAGIDIISFNQAL---EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 G+ +D F QAL +E+ A A S L + E + +L YG T+F+GY+ Sbjct: 416 SEHGVQ-VDTEGFEQALEEQQERARAAAAFSKELFKRSNEAL-AALAADYGGTKFVGYES 473 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L + VK ++ + +EEA +G +V+VV D+TPFYA Sbjct: 474 LE-----------------------AQAQVKLLLVGEQTIEEAPAGTEVQVVLDRTPFYA 510 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ+GD G +G +++ QK +GIF+H A VE G L+ ++ +D +RR Sbjct: 511 EGGGQVGDAGVLEWEGGWARVSTTQKNPDGIFLHIARVEEGTLKAGSTVRALVD-MHRRD 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NH+ATHLLH AL +LGSHV Q GS + PD LRFD + +PI +L IE VN Sbjct: 570 TEKNHTATHLLHAALRAVLGSHVQQKGSYVGPDRLRFDFSQFEPIAPRDLARIELLVNRW 629 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I + PV E+A GA AL G KY D VRVVSVE V S LCGG HV T Sbjct: 630 IQADFPVSYTYKPLEEARKEGAMALFGEKYGDVVRVVSVEGAIDNVTSKELCGGCHVRRT 689 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 GEI IV+E S+ AG+RRIEA+TG A ++ ++L L+ L + +++ RV + Sbjct: 690 GEIGAFVIVAEESVAAGVRRIEALTGTGATQYVREMLDRLGGLSRELGTTPEHLLERVNK 749 Query: 763 IWEEYR-------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815 + +E + KL+L A+ +L + +S + +++ + +++ L+ D Sbjct: 750 LQDELKAREKEIEKLKLDLARAQLGGSAAGISLKEANGYRYLAVKLEGLEAGALRGAADE 809 Query: 816 LQKKIQSGIIML 827 L + Q+ ++ + Sbjct: 810 LLDRHQADLVAV 821 >gi|257085361|ref|ZP_05579722.1| alanyl-tRNA synthetase [Enterococcus faecalis Fly1] gi|257086856|ref|ZP_05581217.1| alanyl-tRNA synthetase [Enterococcus faecalis D6] gi|257089773|ref|ZP_05584134.1| alanyl-tRNA synthetase [Enterococcus faecalis CH188] gi|257415989|ref|ZP_05592983.1| alanyl-tRNA synthetase [Enterococcus faecalis AR01/DG] gi|307288125|ref|ZP_07568135.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0109] gi|312900645|ref|ZP_07759942.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0470] gi|312904123|ref|ZP_07763291.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0635] gi|256993391|gb|EEU80693.1| alanyl-tRNA synthetase [Enterococcus faecalis Fly1] gi|256994886|gb|EEU82188.1| alanyl-tRNA synthetase [Enterococcus faecalis D6] gi|256998585|gb|EEU85105.1| alanyl-tRNA synthetase [Enterococcus faecalis CH188] gi|257157817|gb|EEU87777.1| alanyl-tRNA synthetase [Enterococcus faecalis ARO1/DG] gi|306500861|gb|EFM70179.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0109] gi|310632599|gb|EFQ15882.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0635] gi|311292126|gb|EFQ70682.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0470] gi|315027379|gb|EFT39311.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2137] gi|315147876|gb|EFT91892.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4244] gi|315164259|gb|EFU08276.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1302] gi|315166647|gb|EFU10664.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1341] gi|315578468|gb|EFU90659.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0630] Length = 880 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 358/921 (38%), Positives = 526/921 (57%), Gaps = 79/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF+D+GE Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + K + L+G + FKLYDT G P+++ +++ GL Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +E QR RAR A S G + +K + ++F+GY Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT+ V I+Q +V EA +G E++F +TPFYAE GGQ+ Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509 Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + DV+K G F+H V + ++ L +D + R ++ NH Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + + Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I + Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740 Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817 ++ K QL N + K + DVN + +I ++V+ K +L+ + D + Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWK 799 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875 +K S +++L ++++K S+L +T+D+ + A DL + ++ KV GGGGGRP MA Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q+GG N A+A V ++L Sbjct: 857 QAGGKNPAGIADALAEVENWL 877 >gi|291550263|emb|CBL26525.1| alanyl-tRNA synthetase [Ruminococcus torques L2-14] Length = 879 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 352/895 (39%), Positives = 517/895 (57%), Gaps = 58/895 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI+ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY++D+EAF++W K G+ A++I R DNFW +GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYEDDDEAFEIWNKKMGIPAERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + E +RY+EIWN VF QF L + +IDTGMGLER+A ++Q+ Sbjct: 181 GCGKPGCTVGCECDRYMEIWNNVFSQFNNDGHGNYTDLIQKNIDTGMGLERLACIVQDVD 240 Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +DID K H+ S + G+ +E + V+ RV+ DH+RS +F+++DGILP+N GR Sbjct: 241 SMFDIDTMKALRDHVCNLSGKQYGIDHETD--VSLRVVTDHIRSVTFMVSDGILPSNSGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG ++ L + YPEL + K I + E+ Sbjct: 299 GYVLRRLLRRACRHGKLLGIDGAFLVELATTVIEGSKDGYPELEEKKEFIFNVIAKEEAN 358 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KT+D+GL +L + + + K +++L+G+ AFKLYDT+G P+D+ +IL +GL D Sbjct: 359 FNKTIDQGLAILADMEAEMEKNGEKVLSGENAFKLYDTYGFPVDLTSEILEEKGLT-YDE 417 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA---TQFIGYDLLRGSKFMKED 472 F +A EEQR+++ + G S T +++ S+ ++ A T+F+GYD L Sbjct: 418 EGFKKAQEEQRAKSEG-TFGTHSYTGKEV--SVYDQLDAALETEFVGYDNLT-------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 S V A+ + E+V+ G+K ++ +QTPFYA GGQ D G Sbjct: 467 ---------------FDSKVTALTTETEVVDALSDGEKGTIIVEQTPFYATMGGQEADKG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D A H V +G+++ ++ L +D +NR NHSATHL Sbjct: 512 VIRTADGEFVVEDCIHLAGTKVGHVGHVVKGMIKIGDAVTLEVDAKNRALTERNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LGSHV Q GS + D LRFD TH +T ELK +E+ VN+ IA L VVT+ Sbjct: 572 LQKALRTVLGSHVEQAGSFVNADRLRFDFTHFSAVTPEELKKVEEIVNEQIANALAVVTK 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + E+A +GA AL G KY D VRVV D S CGGTHV +T EI L I+S Sbjct: 632 NLPIEEARKTGAQALFGEKYGDVVRVV-----DMSGFSVEFCGGTHVKNTSEITALKIIS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES + AG+RRIEA+T + ++ + LK A +K + N+ ++ + E + L Sbjct: 687 ESGVAAGVRRIEALTSEGLMNYYAEMERLLKEAAQLVKATPENLAEKITHLQAENKSLKG 746 Query: 771 QLIHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ K K+ Q D+ ++ V ++ + VD L+ + D L++K+ G+++L Sbjct: 747 EVESLKSKMAQSAAGDILDQVKEVKGVKLLAAQLDGVDMNGLRDLGDQLKEKLGEGVVVL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + K S++ T+ + + +A +L + A ++ GGGGGGRP+MAQ+GG N Sbjct: 807 AS-GNDGKVSLMATATDGAMKQGAHAGNLVKAIAGLV-GGGGGGRPNMAQAGGKN 859 >gi|300860344|ref|ZP_07106431.1| alanine--tRNA ligase [Enterococcus faecalis TUSoD Ef11] gi|300849383|gb|EFK77133.1| alanine--tRNA ligase [Enterococcus faecalis TUSoD Ef11] gi|315145691|gb|EFT89707.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2141] Length = 880 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 357/921 (38%), Positives = 525/921 (57%), Gaps = 79/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF+D+GE Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + K + L+G + FKLYDT G P+++ +++ GL Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +E QR RAR A S G + +K + ++F+GY Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT+ V I+Q +V EA +G E++F +TPFYAE GGQ+ Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509 Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + DV+K G F+H V + ++ L +D + R ++ NH Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + + Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I + Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740 Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEV---DSKELKSVMDALQ 817 ++ K QL N + K + D+N + +I ++V D +L+ + D + Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875 +K S +++L ++++K S+L +T+D+ + A DL + ++ KV GGGGGRP MA Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q+GG N A+A V ++L Sbjct: 857 QAGGKNPEGIADALAEVENWL 877 >gi|167758103|ref|ZP_02430230.1| hypothetical protein CLOSCI_00441 [Clostridium scindens ATCC 35704] gi|167664000|gb|EDS08130.1| hypothetical protein CLOSCI_00441 [Clostridium scindens ATCC 35704] Length = 879 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 355/909 (39%), Positives = 517/909 (56%), Gaps = 54/909 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPSKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ +I+ W+ LT LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKESIRWTWEFLTDVVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EA+++W K G+ A++I R DNFW +GPCGPCSE+++D+GE Sbjct: 122 RLYPSVYLDDDEAWEIWNKDIGIPAERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QF+ L + +IDTGMGLER+A ++QE Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNNNYTELEQKNIDTGMGLERLACIVQEVD 240 Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +DID K H+ + + G E + V+ RVI DH+RS +F+I+DGI+P+NEGR Sbjct: 241 SMFDIDTMKALRDHVCRLAHAEYGRDEETD--VSLRVITDHIRSVTFMISDGIMPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLL ++ L + YPEL + K I + + E+E+ Sbjct: 299 GYVLRRLLRRACRHGRLLDIPGEFLVELAQNVIEGSKDGYPELEEKKEFIFKVIAKEEEQ 358 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KT+D+GL +L +++ K ++ L+G AFKLYDT+G PLD+ ++IL +G++ +D Sbjct: 359 FNKTIDQGLSILSDMVAETEKKGEKTLDGQNAFKLYDTYGFPLDLTKEILEEKGMS-VDE 417 Query: 416 ISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F +A+E QR AR A + G ++ S+ T+F+GYD L Sbjct: 418 KGFKEAMEIQRKTAREAREVTNYMGADVTVYESIDPSI-TTEFVGYDNL----------- 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S V + E+V+ G++ + ++TPFYA +GGQ D G Sbjct: 466 ------------SYESEVTVLATDTELVDALSDGERGTIFVEKTPFYATSGGQEADKGII 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + DV K G F H V +G+++ L +D NR + NHSATHLLH Sbjct: 514 RTADGEFIVEDVVKLMGGKFGHIGHVSKGMIKVGDKAALEVDTDNRMLSANNHSATHLLH 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG+HV Q GS + D LRFD TH +T ELK +E VN+ I L V + M Sbjct: 574 KALRMVLGNHVEQAGSSVNADRLRFDFTHFSALTEEELKKVEAIVNEQIMNCLNVKVQNM 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E+A +GAAAL G KY VRVVS+ G S CGGTHV++TG I I+SE+ Sbjct: 634 PIEEAKKTGAAALFGEKYGSIVRVVSM-----GDFSIEFCGGTHVANTGVITAFKILSET 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 + AG+RRIEA+T + + +EKL A LK + + ++ + E + L ++ Sbjct: 689 GVAAGVRRIEALTSKGLLKYYDELEEKLHEAAKLLKAAPDKLTDKISHLQAENKALHSEV 748 Query: 773 IHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K KL + ++ + V ++ + +VD L+ + D L+KK+ GII++ Sbjct: 749 ESLKSKLAQDAMGDVMDQVVEVKGVKLLATKVEDVDMNGLRDLGDQLKKKLGEGIIVIAS 808 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + + K S++ T+ +D+ +A +L + A ++ GGGGGGRP+MAQ+GG N D+A Sbjct: 809 AT-DGKVSLMATATKGAIDKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNPAGMDEA 866 Query: 889 IAGVASFLK 897 IA A L+ Sbjct: 867 IAKAAEVLE 875 >gi|29375946|ref|NP_815100.1| alanyl-tRNA synthetase [Enterococcus faecalis V583] gi|227518645|ref|ZP_03948694.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0104] gi|227553175|ref|ZP_03983224.1| alanyl-tRNA synthetase [Enterococcus faecalis HH22] gi|229550130|ref|ZP_04438855.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 29200] gi|255972907|ref|ZP_05423493.1| alanyl-tRNA synthetase [Enterococcus faecalis T1] gi|255975962|ref|ZP_05426548.1| alanyl-tRNA synthetase [Enterococcus faecalis T2] gi|256762386|ref|ZP_05502966.1| alanyl-tRNA synthetase [Enterococcus faecalis T3] gi|256958870|ref|ZP_05563041.1| alanyl-tRNA synthetase [Enterococcus faecalis DS5] gi|256965234|ref|ZP_05569405.1| alanyl-tRNA synthetase [Enterococcus faecalis HIP11704] gi|257419191|ref|ZP_05596185.1| alanyl-tRNA synthetase [Enterococcus faecalis T11] gi|257422731|ref|ZP_05599721.1| alanyl-tRNA synthetase [Enterococcus faecalis X98] gi|307271131|ref|ZP_07552414.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4248] gi|307273337|ref|ZP_07554582.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0855] gi|307277483|ref|ZP_07558575.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2134] gi|307279186|ref|ZP_07560244.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0860] gi|312952383|ref|ZP_07771258.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0102] gi|41018198|sp|Q835J8|SYA_ENTFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29343408|gb|AAO81170.1| alanyl-tRNA synthetase [Enterococcus faecalis V583] gi|227073902|gb|EEI11865.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0104] gi|227177701|gb|EEI58673.1| alanyl-tRNA synthetase [Enterococcus faecalis HH22] gi|229304716|gb|EEN70712.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 29200] gi|255963925|gb|EET96401.1| alanyl-tRNA synthetase [Enterococcus faecalis T1] gi|255968834|gb|EET99456.1| alanyl-tRNA synthetase [Enterococcus faecalis T2] gi|256683637|gb|EEU23332.1| alanyl-tRNA synthetase [Enterococcus faecalis T3] gi|256949366|gb|EEU65998.1| alanyl-tRNA synthetase [Enterococcus faecalis DS5] gi|256955730|gb|EEU72362.1| alanyl-tRNA synthetase [Enterococcus faecalis HIP11704] gi|257161019|gb|EEU90979.1| alanyl-tRNA synthetase [Enterococcus faecalis T11] gi|257164555|gb|EEU94515.1| alanyl-tRNA synthetase [Enterococcus faecalis X98] gi|306504311|gb|EFM73523.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0860] gi|306505748|gb|EFM74926.1| alanyl-tRNA synthetase [Enterococcus faecalis TX2134] gi|306509864|gb|EFM78889.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0855] gi|306512629|gb|EFM81278.1| alanyl-tRNA synthetase [Enterococcus faecalis TX4248] gi|310629767|gb|EFQ13050.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0102] gi|315033782|gb|EFT45714.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0017] gi|315036867|gb|EFT48799.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0027] gi|315153346|gb|EFT97362.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0031] gi|315155877|gb|EFT99893.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0043] gi|315157956|gb|EFU01973.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0312] gi|315170069|gb|EFU14086.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1342] gi|315575565|gb|EFU87756.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0309B] gi|315579993|gb|EFU92184.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0309A] gi|323480614|gb|ADX80053.1| alanyl-tRNA synthetase [Enterococcus faecalis 62] gi|327535020|gb|AEA93854.1| alanine--tRNA ligase [Enterococcus faecalis OG1RF] gi|329571430|gb|EGG53117.1| alanine--tRNA ligase [Enterococcus faecalis TX1467] Length = 880 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 357/921 (38%), Positives = 525/921 (57%), Gaps = 79/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF+D+GE Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + K + L+G + FKLYDT G P+++ +++ GL Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +E QR RAR A S G + +K + ++F+GY Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT+ V I+Q +V EA +G E++F +TPFYAE GGQ+ Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509 Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + DV+K G F+H V + ++ L +D + R ++ NH Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + + Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I + Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740 Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEV---DSKELKSVMDALQ 817 ++ K QL N + K + D+N + +I ++V D +L+ + D + Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875 +K S +++L ++++K S+L +T+D+ + A DL + ++ KV GGGGGRP MA Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q+GG N A+A V ++L Sbjct: 857 QAGGKNPAGIADALAEVENWL 877 >gi|21220002|ref|NP_625781.1| alanyl-tRNA synthetase [Streptomyces coelicolor A3(2)] gi|256788900|ref|ZP_05527331.1| alanyl-tRNA synthetase [Streptomyces lividans TK24] gi|289772786|ref|ZP_06532164.1| alanyl-tRNA synthetase [Streptomyces lividans TK24] gi|22096206|sp|Q9KXP9|SYA_STRCO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|8249960|emb|CAB93381.1| alanine tRNA synthetase [Streptomyces coelicolor A3(2)] gi|289702985|gb|EFD70414.1| alanyl-tRNA synthetase [Streptomyces lividans TK24] Length = 890 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 352/921 (38%), Positives = 513/921 (55%), Gaps = 76/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + T+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT D Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSAQDKGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL+ITVY +D+EA ++W + G+ +++I R+ DN+WSM GPCGPCSEI +D+ Sbjct: 119 LDPERLWITVYQDDDEAERIWHDVVGVPSERIQRLGKKDNYWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ K+E IL P +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKEEFEILGELPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ID +I + ++TG+ Y V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYEIDTSMAVINKATELTGVAYGDAQASDVSLRVVTDHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE+ Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELVTDRERIEKVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G +LD +S +L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEENAFLKTLKAGTNILDTAVSDTKASGGTVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSG-TTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A + +G + + +K GAT F+GY Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAQAKKTGHAGAGAYREIADKAGATDFVGY-------- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T S+IV I+ G A G +VE+V D+TPFYAE GGQ+ Sbjct: 469 --------------TDTESESTIV-GILVDGASSPAATEGDEVEIVLDRTPFYAEGGGQI 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG + G +++ D QK G++VH +V+ G + +ID + R+ ++ H Sbjct: 514 GDTGRIRVDTGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDDRRRKAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + +A + +E +N+++A++L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLARDL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A S L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYSFLAREHTVVAQLQELIK-------GRPEELPEKV 741 Query: 768 RKL--QLIHAKRKLQ-------LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMD 814 + +L A+++++ L DV ++ + +V + +L+ ++ Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAGGLADSAKDVRGVALVTGQVPDGTTADDLRKLVL 801 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGR 871 ++ +IQ G +V + L V+ + R A DL R +AK L GGGGGG+ Sbjct: 802 DVRGRIQGGRAAVVALFTTVNGKPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGGGK 860 Query: 872 PHMAQSGGPNGNKADQAIAGV 892 P +AQ GG N A+ V Sbjct: 861 PDVAQGGGQNAAAIGDAVDAV 881 >gi|295094821|emb|CBK83912.1| alanyl-tRNA synthetase [Coprococcus sp. ART55/1] Length = 887 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 348/901 (38%), Positives = 514/901 (57%), Gaps = 44/901 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEF + GH + S SLIP ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEFMESKGHLRMKSFSLIPHNDNSLLLINSGMAPLKPYFTGQEVPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD+ Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWTWEFLTEVVGLDKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF +W K G+ AD+I R DNFW GPCGPCSE+++D+GE Sbjct: 122 RLYPSVYQDDDEAFDIWNKEIGVDADRIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + + +RY+E+WN VF QF L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFNNDGHNNYTELEQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L ++ G++YE ++ V+ R+I DH+RS +F+ +DGI+P+NEGRGY Sbjct: 241 SIFDVDTIKALRDKVCEMAGVEYETDHEKDVSIRLITDHIRSVTFMTSDGIVPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + AYPEL + K I + E+E F Sbjct: 301 VLRRLLRRAARHGRLLGIKGKFLSELAKTVIEVSEDAYPELSEKKEYIFNKIDKEEESFN 360 Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D GL +L + + +++L+GD AFKLYDT+G PLD+ ++IL G+ +D Sbjct: 361 KTIDTGLAILKDYIDETKAAGEKVLSGDKAFKLYDTYGFPLDLTKEILEEEGIE-VDEDR 419 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + + Q+ AR A G ++ L ++F+GYD L Sbjct: 420 FTECMNIQKETARKARKTTTYMGADATVYEQLPVDM-TSEFVGYDKL------------- 465 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 K I + +++ V + ++ + VS G + V+ +TPFYA GGQ+GD G Sbjct: 466 TYKSTI---SAITTEVGEGDDKKSVLADTVSEGAQASVIVPETPFYATMGGQIGDKGIIK 522 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + D K G H VE G L LT+D +NR + NHSATHLL Sbjct: 523 TENGTFVVEDTVKVVGGKIAHIGYVESGELNVGDEAELTVDAENRALICNNHSATHLLQR 582 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + P LRFD +H + +T E+K +ED VN+ I ++PV T +M+ Sbjct: 583 ALKMVLGDHVEQAGSLVEPGRLRFDFSHDQAMTKEEIKKVEDIVNEQIQLDIPVCTDVMS 642 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A +GA AL G KY ++VRVVS+ G S LCGGTHV+STG I I+SE+ Sbjct: 643 VDEAKETGAMALFGEKYGEKVRVVSM-----GDFSKELCGGTHVASTGAIKTFKIISEAG 697 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG RRIEA+T A + +++L A K V R+E++ E ++L + Sbjct: 698 VAAGTRRIEALTSVGALDYYRNVEQELMDAAKAAKTDIYGVASRIEQLLAEVKELTNENK 757 Query: 776 KRKLQLNVE---DLSCHKIAD--VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K ++ E D+ I + ++ I + D L+++ D + K+ +++L Sbjct: 758 KLKDKMAKEAAGDVLSSAIDKDGIKILTAAIPDTDMNSLRNLGDDFKSKLGDSVVVLAS- 816 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +K+ K +++ + T+ + + +A ++ + A ++ GGGGGGRP+MAQ+GG N + + A+ Sbjct: 817 AKDGKVNLIAMATDGAVAKGAHAGNIIKAVAGLV-GGGGGGRPNMAQAGGKNPDGIEAAL 875 Query: 890 A 890 A Sbjct: 876 A 876 >gi|310829304|ref|YP_003961661.1| alanyl-tRNA synthetase [Eubacterium limosum KIST612] gi|308741038|gb|ADO38698.1| alanyl-tRNA synthetase [Eubacterium limosum KIST612] Length = 879 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 343/910 (37%), Positives = 524/910 (57%), Gaps = 56/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL FF+ GH L S L+P ND +L+ NSGM P K FTG E P + VTT Sbjct: 6 LNEIREKFLAFFESKGHLRLKSFPLVPINDKSLLLINSGMAPMKPYFTGDEIPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++NVG+T RH TFFEMLGNFSFG YFK+ AI AW+ T+ ++D Sbjct: 66 CQKCIRT----PDIENVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFCTEVMEMDPE 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 ++Y+++Y +DEEA +W G+ ++I+R+ DNFW GPCGPCSE+++D+GE Sbjct: 122 KIYVSIYLDDEEAHDIWHDEIGVPEERIVRLGKEDNFWEHG-LGPCGPCSELYYDRGEEY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+E WNLVF QF++ + L +IDTGMGLER+AT++Q Sbjct: 181 GCGSPDCAPGCECDRYVEFWNLVFTQFDKDEEGNYNPLANPNIDTGMGLERLATIMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N ++ID H++ + G+KY N + V+ RVI DH+RS +F+IADG++P NEGRGY Sbjct: 241 NIFEIDTIGHILNYICKKAGVKYGENAQDDVSIRVITDHVRSVTFMIADGVMPGNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG E + + + AYPEL + + I++ +R E+ERF Sbjct: 301 VLRRLLRRAARHGKLLGMQELFLYDVAKEVVRVSADAYPELAEKQDYIQKLIRIEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D+GL LL+ L L + E + G AFKLYDT+G P D+ ++I+ RGL I Sbjct: 361 ETIDQGLSLLEKELDSLIEQEEKVFPGQGAFKLYDTYGFPYDLTKEIVEERGLTLI-ASE 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIW----FSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F +A++EQR RAR + + +W F+ +F+GY+ L Sbjct: 420 FEEAMQEQRERARKAR----AESELAVWADDPFNPLGPDALVEFVGYENLEA-------- 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 NG + ++ E+V E +G+ V V+ D+T FYAE+GGQ+GD G Sbjct: 468 ------------NGK---IIGLISGEELVSEVHAGEDVLVLLDKTSFYAESGGQVGDKGQ 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + +++TD +K + +H+ V G + + ++ + R NH++THLL Sbjct: 513 IVSGDRVIEVTDCKKGSLSRHIHYGKVVSGTFKMGEEVTTKVNRELRAATQRNHTSTHLL 572 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG HV Q GS ++PD LRFD H +P+T E + +E+ VN I + + V Sbjct: 573 QKALKQVLGDHVEQAGSFVSPDRLRFDFNHFQPMTHEEKRQVEEIVNKAILEAMDVAIFE 632 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + +DA + GA AL G KY + VRVV V G S LCGG H++++ ++ + I+SE Sbjct: 633 TSIDDARSMGAMALFGEKYGEVVRVVKV-----GDFSIELCGGCHITNSAQVGMFKILSE 687 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + + AGIRRIEA TG A H+ D+ L A LK + +++ +V E+ E+ + + + Sbjct: 688 TGVAAGIRRIEAATGMNAVHHVEQMDDTLLETAEALKTNPDHLLEKVTELAEQSKHKEKV 747 Query: 774 --HAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLV 828 K K N+ K+ ++ + I+E VD +EL+++ D L+ ++ SGI++L Sbjct: 748 INELKHKFAGNMVMDIHQKVTVIDGVQTTIAEVEGVDMEELRNISDMLKDRMGSGIVLL- 806 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G ++K + + T+D+L++ F+A L + A++ GGGGGGRP MAQ+GG K + Sbjct: 807 GTRGKEKVNFIATATKDILNKGFHAGKLIKEVAQI-AGGGGGGRPDMAQAGGKKPEKLGE 865 Query: 888 AIAGVASFLK 897 A+ +K Sbjct: 866 ALEKAKEIIK 875 >gi|315150647|gb|EFT94663.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0012] Length = 880 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 358/921 (38%), Positives = 526/921 (57%), Gaps = 79/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF+D+GE Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINETFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + K + L+G + FKLYDT G P+++ +++ GL Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +E QR RAR A S G + +K + ++F+GY Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT+ V I+Q +V EA +G E++F +TPFYAE GGQ+ Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509 Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + DV+K G F+H V + ++ L +D + R ++ NH Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + + Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I + Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740 Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817 ++ K QL N + K + DVN + +I ++V+ K +L+ + D + Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWK 799 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875 +K S +++L ++++K S+L +T+D+ + A DL + ++ KV GGGGGRP MA Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q+GG N A+A V ++L Sbjct: 857 QAGGKNPAGIADALAEVENWL 877 >gi|307298258|ref|ZP_07578062.1| alanyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916344|gb|EFN46727.1| alanyl-tRNA synthetase [Thermotogales bacterium mesG1.Ag.4.2] Length = 869 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 364/918 (39%), Positives = 537/918 (58%), Gaps = 81/918 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR ++L+FF+ H+ L S+SLIP NDP LMFT +GMVPFK IF G+ +P Y+ VTT Sbjct: 7 AEIRESYLKFFESKDHKRLQSASLIP-NDPQLMFTVAGMVPFKPIFWGKIEPTYRRVTTC 65 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR ND++NVGRT RH TFFEMLGNFSFG YFK I+ AW+ +T+ +L + R Sbjct: 66 QKCVRT----NDIENVGRTPRHQTFFEMLGNFSFGDYFKRETIKWAWEFVTEYLNLPENR 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGE-- 181 L+++VY +D+EAF +W+ G+ KIIR+ DN+W A +GPCGP SEIF D+G Sbjct: 122 LWVSVYLDDDEAFSIWRDEVGIPEKKIIRLGKKDNWWGPAGPSGPCGPDSEIFIDRGHGD 181 Query: 182 -------CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 C P G R++E WNLVF +F Q + L + +IDTG GLER A Sbjct: 182 NCPDPENCSPACDCG------RFLEFWNLVFTEFNQDEEGNLTYLERKNIDTGFGLERAA 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGIL 291 ++LQ+ +N+D DLF +I+ E++ G+KY+ G++I + +VI DH RS +F+++DGIL Sbjct: 236 SILQDVDSNFDTDLFIPIIKKIEEILGIKYKEKPGSDI-SIKVIADHARSVAFMVSDGIL 294 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRRI+RRA+ ++ LLGY+ P + ++ + MG+ YPEL Q +E Sbjct: 295 PSNEGRGYVLRRILRRAVRHSSLLGYSSPFLYRIVETVADHMGNVYPELRQRLSFTQEIT 354 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF TL G L VL + K E L+G F L+DT+G PL+++++I+ G+ Sbjct: 355 LKEEERFLSTLVNGEKRLKSVL--VDKKE-LSGPELFMLHDTYGFPLELVEEIVAGTGVT 411 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-------GATQFIGYDLLR 464 +D + + + QR RAR ++G ++ + S E Y G ++F GY Sbjct: 412 -LDKEGYEREMALQRERAR-EAMG------DREYLSNVEAYSTIFPVTGNSKFTGY---- 459 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S+F ED+ S + AI+++G+ VE G+ +++F++TPFY E Sbjct: 460 -SRF--EDK----------------SKIVAILKEGDAVETLSKGETGDLIFEKTPFYPER 500 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ DTG D ++ V + + VH A VE G L L++D R+ ++ Sbjct: 501 GGQVTDTGLIRTDNASAKVERVFIPYQEMIVHRAFVEEGALHVGDKAWLSVDEDRRKAIT 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG HV Q+GS + PD LRFD +H +P+++ EL +E+ VN+ I Sbjct: 561 RNHTATHLLHAALRKVLGEHVHQSGSLVQPDRLRFDFSHFQPLSTDELNEVEEIVNEEIL 620 Query: 645 QNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + VV + D I AL KY D+VRV+SVE S LCGGTHV +TG Sbjct: 621 K-AKVVDKAEKSFDEIKGQDVMALFEEKYGDKVRVISVE-----GFSRELCGGTHVDNTG 674 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI L I+S++S+ AG RRIEAITG+ + ++ + K++ L+V + ++ R++ + Sbjct: 675 EIGLFKILSDTSVAAGTRRIEAITGKTSLNYFRNLFNRQKTIREVLEVPEDLIIQRLQGV 734 Query: 764 WEEYRK--LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQK 818 E + ++ K KL L+ + L K VN +I V+ S L++ D L Sbjct: 735 LNELKSGGQEIKRLKEKL-LSGDSLMKDKKMIVNGTKLLIRRVENAPSSALRNGADVLLS 793 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K GI+++ E S ++ V + L D+FNA ++AR A+ L GGGGGGRP AQ+G Sbjct: 794 KEGGGIVIIFN-ELEDSVSFVVKVEKKLTDKFNAGEIARKIARDL-GGGGGGRPDFAQAG 851 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K I + +L Sbjct: 852 GKDLSKLQTLIERIDEYL 869 >gi|227551394|ref|ZP_03981443.1| alanyl-tRNA synthetase [Enterococcus faecium TX1330] gi|257895992|ref|ZP_05675645.1| alanyl-tRNA synthetase [Enterococcus faecium Com12] gi|293377450|ref|ZP_06623652.1| alanine--tRNA ligase [Enterococcus faecium PC4.1] gi|293570502|ref|ZP_06681557.1| alanyl-tRNA synthetase [Enterococcus faecium E980] gi|227179513|gb|EEI60485.1| alanyl-tRNA synthetase [Enterococcus faecium TX1330] gi|257832557|gb|EEV58978.1| alanyl-tRNA synthetase [Enterococcus faecium Com12] gi|291609448|gb|EFF38715.1| alanyl-tRNA synthetase [Enterococcus faecium E980] gi|292643968|gb|EFF62076.1| alanine--tRNA ligase [Enterococcus faecium PC4.1] Length = 880 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 363/930 (39%), Positives = 530/930 (56%), Gaps = 83/930 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D II + DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+GE P PG E ERY+EIWNLVF +F + LP +IDTGMG Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286 LERM +++Q+ N++ DLF +I A E+++ +KY N + ++++VI DH+R+ SF I Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V+ + + L+G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLSGKDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D F + ++ QR RAR A S G + +K + ++FIGY Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + D ++L ++ +GE + ++ + +++FDQTPFYAE Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEIAEGEAQMIFDQTPFYAE 503 Query: 524 AGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G + + I +TDVQK G F+H V + + + L ID R Sbjct: 504 MGGQVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + A GA AL G KY VRVV++ G S LCGGTHV++ Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T I + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810 E++ ++ R+LQ K QL L+ + DV N + I ++V D +L+ Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKNPERINGKTIIAAQVKVKDMNQLR 792 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868 + D ++K S I++L +E K S+L +T++ + A DL + ++ KV GGG Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGRP MAQ+GG N A+ +L + Sbjct: 850 GGRPDMAQAGGKNPAGIPDALKAAKEWLAQ 879 >gi|257887497|ref|ZP_05667150.1| alanyl-tRNA synthetase [Enterococcus faecium 1,141,733] gi|257823551|gb|EEV50483.1| alanyl-tRNA synthetase [Enterococcus faecium 1,141,733] Length = 880 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 363/930 (39%), Positives = 530/930 (56%), Gaps = 83/930 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D II + DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+GE P PG E ERY+EIWNLVF +F + LP +IDTGMG Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286 LERM +++Q+ N++ DLF +I A E+++ +KY N + ++++VI DH+R+ SF I Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V+ + + L+G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKSENGTTLSGKDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D F + ++ QR RAR A S G + +K + ++FIGY Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + D ++L ++ +GE + ++ + +++FDQTPFYAE Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEIAEGEAQMIFDQTPFYAE 503 Query: 524 AGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G + + I +TDVQK G F+H V + + + L ID R Sbjct: 504 MGGQVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + A GA AL G KY VRVV++ G S LCGGTHV++ Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T I + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810 E++ ++ R+LQ K QL L+ + DV N + I ++V D +L+ Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKNPERINGKTIIAAQVKVKDMNQLR 792 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868 + D ++K S I++L +E K S+L +T++ + A DL + ++ KV GGG Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGRP MAQ+GG N A+ +L + Sbjct: 850 GGRPDMAQAGGKNPAGIPDALKAAKEWLAQ 879 >gi|315160222|gb|EFU04239.1| alanyl-tRNA synthetase [Enterococcus faecalis TX0645] Length = 880 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 357/921 (38%), Positives = 525/921 (57%), Gaps = 79/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF+D+GE Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + K + L+G + FKLYDT G P+++ +++ GL Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +E QR RAR A S G + +K + ++F+GY Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT S + I+Q +V EA +G E++F +TPFYAE GGQ+ Sbjct: 465 ------------TELT--YDSELFVIIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509 Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + DV+K G F+H V + ++ L +D + R ++ NH Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + + Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I + Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740 Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEV---DSKELKSVMDALQ 817 ++ K QL N + K + D+N + +I ++V D +L+ + D + Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875 +K S +++L ++++K S+L +T+D+ + A DL + ++ KV GGGGGRP MA Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q+GG N A+A V ++L Sbjct: 857 QAGGKNPEGIADALAEVENWL 877 >gi|294793973|ref|ZP_06759110.1| alanine--tRNA ligase [Veillonella sp. 3_1_44] gi|294455543|gb|EFG23915.1| alanine--tRNA ligase [Veillonella sp. 3_1_44] Length = 871 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 344/909 (37%), Positives = 504/909 (55%), Gaps = 61/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P + +TT Sbjct: 4 NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRITTC 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK +R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD+ R Sbjct: 64 QKSMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176 Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 C P PG + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL +I+A+ + G+ Y + N V+ +VI DH R+ + LI+DG+LP+NEGRG Sbjct: 235 KTNFETDLIFPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ERF Sbjct: 295 YVLRRILRRAVRHGRLLGIEGIFLTPLIDVVVDILGPGITSIAEKQDFVKRVVQNEEERF 354 Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A++EQR RAR +KE +K D L Sbjct: 414 GFEAAMKEQRERAREA--------------RVKED--------------AKVATPDITFL 445 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++ +S V + + E ++ A G ++ V+ TPF+AE GGQLGDTG +G Sbjct: 446 KDEELVEDEAETASSVLMLGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH A Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVIEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAA 565 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 566 LKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SE+ I Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFIGSFRLTSEAGI 680 Query: 717 RAGIRRIEAITGQRARSHLMGQDE-KLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 +G+RRIEAITG RA QD ++ +AS LK + R+ ++ E ++ +L Sbjct: 681 GSGVRRIEAITG-RAALEAAKQDRLTIERMASELKTKSPQIEERLHQVLTEAKETVKELE 739 Query: 774 HAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVG 829 ++++ + DV F+ + EL+ + D L K SG++++ Sbjct: 740 QIRKEVSAAGAADIIAGKVMVGDVEFVGAAVKASSIDELRDLADMGLDKLNGSGVVLVGA 799 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + V++D++ + A ++ + +A+V GG GGGRP MAQ+GG K +A Sbjct: 800 AMGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMEA 858 Query: 889 IAGVASFLK 897 + LK Sbjct: 859 LKAGGEALK 867 >gi|160939113|ref|ZP_02086464.1| hypothetical protein CLOBOL_04007 [Clostridium bolteae ATCC BAA-613] gi|158438076|gb|EDP15836.1| hypothetical protein CLOBOL_04007 [Clostridium bolteae ATCC BAA-613] Length = 887 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 345/899 (38%), Positives = 512/899 (56%), Gaps = 50/899 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P VTT Sbjct: 14 VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRNRVTT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI W+ LT LD Sbjct: 74 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWTWEFLTDVVGLDPD 129 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF +W K G+ A++I + DNFW +GPCGPCSE+++D+GE Sbjct: 130 RLYPSVYLDDDEAFGIWNKEIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEAF 188 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + + +RYIE+WN VF QF+ L +IDTGMGLER+A V+Q Sbjct: 189 GCGKPGCTVGCDCDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVVVQGVD 248 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + + +D K L+ Q+ +Y+ ++ V+ R++ DH++S +F+I+DGI+P+NEGRGY Sbjct: 249 SLFTVDTNKALLDRVCQLAHTEYQKDHETDVSLRIVTDHVKSCTFMISDGIMPSNEGRGY 308 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R LG + L + YPEL + + +I + L E+E+F Sbjct: 309 VLRRLLRRAARHGRKLGIEGRFLAGLSETVIELSKDGYPELEEKQAMIFKVLSEEEEKFN 368 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + K ++ L+G AFKLYDT+G PLD+ ++IL RG +D Sbjct: 369 KTIDQGLSILGEMQDEMQKTGNKCLSGANAFKLYDTYGFPLDLTKEILEERGCT-VDEDG 427 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A++EQ+ +AR A G ++ S+ T+FIGYD L Sbjct: 428 FAAAMKEQKEKARKARKTTNYMGADVTVYQSIDPSV-TTEFIGYDRLT------------ 474 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S V + + E+V+ GQK ++ +QTPFY GGQ GDTG Sbjct: 475 -----------ADSRVTVLTTEEELVQALTDGQKGTIIVEQTPFYGTMGGQQGDTGVISN 523 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++ D G H ++ +G+ + ++ L++ NR NHSATHLL A Sbjct: 524 ENGAFKVEDTIHLQGGKVGHVGVMTKGMFQVGENVTLSVCAHNRALTCKNHSATHLLQKA 583 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS + LRFD TH +T E+K +E+ VN I +LPVVT++M Sbjct: 584 LRKVLGDHVEQAGSYVDAGRLRFDFTHFSAMTPDEIKKVEELVNQEIQASLPVVTQVMTL 643 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A +GA AL G KY D+VRVV + G S+ LCGGTHV +TG I I+SE+ I Sbjct: 644 EEAKKTGAMALFGEKYGDKVRVVRM-----GDFSTELCGGTHVPNTGTIAYFKIISEAGI 698 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+T + H +E+L+ A K + + +++ + EE + L + K Sbjct: 699 AAGVRRIEALTSEGLMKHYQEVEEELQEAARTAKTTPSALTSKIQSLLEEIKTLHSENEK 758 Query: 777 RKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L + L ++ +VN ++ ++ VD ++++ D L+ K+ G+I+L Sbjct: 759 LKSKLANDSLGDVMSQVKEVNGLKVLAARVAGVDMNGMRNLGDQLKDKLGEGVIVLA-CE 817 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ K +++ T+ + +A +L + A ++ GGGGGGRP+MAQ+GG N D A+ Sbjct: 818 QDGKVNLMATATDSAQKKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNPAGIDDAL 875 >gi|299535706|ref|ZP_07049027.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1] gi|298728906|gb|EFI69460.1| alanyl-tRNA synthetase [Lysinibacillus fusiformis ZC1] Length = 886 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 344/921 (37%), Positives = 510/921 (55%), Gaps = 72/921 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +LEFF++ GH PS+ L+P NDP+L++ NSG+ K F G+ P +T QK Sbjct: 6 IRRMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRIIPDNPRITNAQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT K D Sbjct: 66 SIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMGFDPAL 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180 L IT++ ED+EA+ +W + G+ +++IR+ NFW + E GP GP SEIF+D+G Sbjct: 122 LSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDRGVEYG 178 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E P PG E ERY+EIWNLVF QF LPK +IDTGMGLER+ +V+Q Sbjct: 179 SDENDPEMYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQ 236 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRSSSF 284 N+D DLF +I+ E+ KY+ V+ +VI DH+R+ +F Sbjct: 237 NVPTNFDTDLFMPIIEKIEEFANRKYKRPGEVDLNEIFGSEEDINTPFKVIADHIRTVAF 296 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGYVLRR++RRA+ YA+ +G +P M L+P + M YPE+ + Sbjct: 297 AIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVTEKC 356 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIM 401 I+ +++E+ RF +TLD GL + + V+ G D I D AF+LYDT+G P+++ Sbjct: 357 EFIQRVIKNEEIRFHETLDGGLAIFNEVVESQKAAGHDYIPGAD-AFRLYDTYGFPIELT 415 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 ++ G+ +D F +A+EEQR RARA + S + L A++F+GYD Sbjct: 416 EEYAEEVGMK-VDHEGFEEAMEEQRERARAARQDVDSMQVQN--EVLANLTVASEFVGYD 472 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L V++ + A++ G++ + A GQ+ V+ +TPFY Sbjct: 473 TLT-----------------------VNTEIAAMIVNGQVAKVASEGQEALVILAKTPFY 509 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE GGQ+ D+G D + DVQK G +H +VE G + E ++ ++ +R Sbjct: 510 AEMGGQIADSGTISNDSFTAVVKDVQKAPNGQPLHTVVVESGEMHVEDAVQAVVNRDDRN 569 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATH++ AL +LG HV+Q GS + PD LRFD +H +T EL+ IE VN+ Sbjct: 570 LIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIVNE 629 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + ++ VV ++A A GA AL G KY D VRVVS+ G +S LCGG HV Sbjct: 630 KVWDDIEVVIEEKGIDEAKAMGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHVKR 684 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 + EI IVSE I AG RRIEA+TG+ A + ++ L A+ LK + ++V +V+ Sbjct: 685 SSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEAVKEEEALLNDAAALLKANAKDIVTKVQ 744 Query: 762 EIWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + +Y++LQ L Q + I DV +S + D+ +L+ +MD L Sbjct: 745 ALQADYKELQRENEALSQKIANAQAGAIVDAAQTIGDVTVLSTKVEAKDNNQLRQMMDDL 804 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + K+ +I+L + +K V E + ++A ++ ++ A+ GG GGGRP MA Sbjct: 805 KAKMPKAVIVLGAVDGDKVMLCAGVSKELVGGNYHAGNIVKMVAEAC-GGKGGGRPDMAM 863 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +G + +K D+A+ V ++K Sbjct: 864 AGAKDASKLDEALLSVYDYVK 884 >gi|312898889|ref|ZP_07758277.1| alanyl-tRNA synthetase [Megasphaera micronuciformis F0359] gi|310620051|gb|EFQ03623.1| alanyl-tRNA synthetase [Megasphaera micronuciformis F0359] Length = 868 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 350/903 (38%), Positives = 504/903 (55%), Gaps = 71/903 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF+ H L S SL+P NDP+L+ +GM P K FTG+ P VTT Sbjct: 7 NEIRKAYLDFFESKKHLKLHSFSLVPENDPSLLLIGAGMAPLKPYFTGKLVPPSYRVTTS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ +LD + Sbjct: 67 QKCIRTG----DIDNVGRTARHHTFFEMLGNFSFGDYFKKEAITWAWEFLTEVLELDTNK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY+TVY EDEEA+ +W I GL+ ++I ++ DNFW + E GPCGP SEIF+D G Sbjct: 123 LYVTVYPEDEEAYDIWHNIVGLADERIFKL--EDNFWEIGE-GPCGPDSEIFYDLGPERG 179 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + + +RY+EIWNLVF QF + L K +IDTG GLER+A+V+Q+K + Sbjct: 180 CGKPTCNVGCDCDRYLEIWNLVFTQFNKTKDGSYEPLEKKNIDTGAGLERLASVIQQKES 239 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 N++ DL ++Q V Y + +VI DH+R+ + +I DGILP+NEGRGYVL Sbjct: 240 NFETDLLFPIMQRVIDVCHGDYNNKEQKIAVKVIGDHIRAVTMMIGDGILPSNEGRGYVL 299 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + R+LG E + L+ + AYPEL + K LI+ + +E+ +F T Sbjct: 300 RRILRRAVRFGRVLGIEEAFLADLVDIVIDMYKEAYPELAERKELIKTVIATEEAQFSAT 359 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L +GL LL+ ++ +L G+ FKLYDT G P+++ ++I+ G+ ID F++A Sbjct: 360 LAQGLELLNAMIEDADGTGVLAGEKVFKLYDTFGFPVELTEEIVQEHGMT-IDHDGFDKA 418 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++ Q+ RARA + +K D L Q Sbjct: 419 MKAQQERARAARAKV----------------------------SAKVATPDTTGLDQSAL 450 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + N V++ V I G VE A + ++ D+TPF+AE GGQ+GDTG G + Sbjct: 451 VKDENAVNARVVLIGIDGAAVERAEKDTAITIILDKTPFHAEGGGQIGDTGYITGPSGKA 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 ++TD + A G+ AIV G L + +T+D ++ NH+ATHLL AL +L Sbjct: 511 EVTDTKSLANGLTYMIAIVTEGSLSRGDEVDITVDKVRNLDIARNHTATHLLQAALRKVL 570 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G+HV+Q GS +TP+ LRFD TH P+T+ EL +E VN I +N+ + M +DAI Sbjct: 571 GTHVNQAGSLVTPERLRFDFTHFSPMTNEELAEVEKEVNRQIMKNVDLEIEEMPVDDAIK 630 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL G KY D VRVV+V S LCGG+HV +T I IV ES GIR Sbjct: 631 KGAMALFGEKYGDIVRVVNVPG-----FSCELCGGSHVPNTSVIGSFRIVGESGTGTGIR 685 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+TG+ A + L+ A+ LK + ++ ++E QL+ A ++ + Sbjct: 686 RIEAVTGKAAHERAVADAVLLQEAATLLKSKEADIPAKIE---------QLLTALKEAER 736 Query: 782 NVEDLSCHKIADVNFMSHIISE--------------VDSKE-LKSVMDALQKKIQSGIIM 826 V LS HK+A + + ++ VDS E L+ + D + K+ GI++ Sbjct: 737 EVAQLS-HKLATSSLDDILAAKEEIHGVSVTAASVTVDSAEGLRDMADMVLDKV-GGIVL 794 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + +K + V V E ++A + + +A GGGGGGRP MAQ+GG + K + Sbjct: 795 LGAVQGDKVSFVCKVDKELTKQGYHAGKIVKAAAVAA-GGGGGGRPDMAQAGGKDPQKLE 853 Query: 887 QAI 889 +A+ Sbjct: 854 EAL 856 >gi|256618959|ref|ZP_05475805.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 4200] gi|256598486|gb|EEU17662.1| alanyl-tRNA synthetase [Enterococcus faecalis ATCC 4200] Length = 880 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 358/921 (38%), Positives = 526/921 (57%), Gaps = 79/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF+D+GE Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + K + L+G + FKLYDT G P+++ +++ GL Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +E QR RAR A S G + +K + ++F+GY Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT+ V I+Q +V EA +G E++F +TPFYAE GGQ+ Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509 Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + DV+K G F+H V + ++ L +D + R ++ NH Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + + Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I + Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740 Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817 ++ K QL N + K I +VN + +I ++V+ K +L+ + D + Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDIKEVNGVRYIAAQVNVKDMNQLRQLADQWK 799 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875 +K S +++L ++++K S+L +T+D+ + A DL + ++ KV GGGGGRP MA Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q+GG N A+A V ++L Sbjct: 857 QAGGKNPAGIADALAEVENWL 877 >gi|303232757|ref|ZP_07319442.1| alanine--tRNA ligase [Atopobium vaginae PB189-T1-4] gi|302481243|gb|EFL44318.1| alanine--tRNA ligase [Atopobium vaginae PB189-T1-4] Length = 883 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 316/831 (38%), Positives = 480/831 (57%), Gaps = 53/831 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FL+FF+ G + PSSSLIP +DP+L+ N+GM FK + G + T Sbjct: 10 TTAQIRENFLQFFESKGCKRYPSSSLIP-DDPSLLLANAGMNQFKEYYQGIKTMREIGAT 68 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QKC+R ND++N+G RH +FFEMLGNFSFGGY K +AI AW+ +T + L Sbjct: 69 SCQKCLRT----NDIENIGDA-RHLSFFEMLGNFSFGGYTKAQAIAWAWEFITSPEHLGL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + RLY+TV+ D+EA +LW++ G+ I R+ DNFW+ TGPCGPCSEI+FDQG Sbjct: 124 PKDRLYVTVFTNDDEACELWQE-QGVDLSHISRLGEEDNFWAAGPTGPCGPCSEIYFDQG 182 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G PG ++G+RY+E WNLVF QF++Q LP +IDTGMGLER+A ++Q + Sbjct: 183 PEFEGEKPG--DDGDRYLEFWNLVFTQFDRQEDGSMPELPHRNIDTGMGLERIAAIMQHQ 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 +NY+ D+ + LI E+++ +Y + R++ DH R+ +F+I DGILP NEGRG Sbjct: 241 GSNYEGDVLRTLIAVGEKLSNKRYHETAATDKSLRILADHARACTFMIGDGILPGNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA+ + RLLG M + M ++YP+L + K I+ + +E++RF Sbjct: 301 YVLRRLLRRAIYHGRLLGIRGEFMRTYTHEVMRLMATSYPQLTEGKDRIDAIVSAEEQRF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TLD G LL+ L+ L + L+G+VAFKL+DT+G P+D+ +I D+ +F Sbjct: 361 CATLDAGEALLNKELAQLPSGKPLSGEVAFKLHDTYGFPIDLTCEI-AENAQHPTDMDTF 419 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 N +E+Q++RARA + G IW SL ++ T+F+GY ++ +D +VL Sbjct: 420 NALMEDQKARARAQANRDAWGQANSIWASLSDELSETEFLGY-----TQNSCDDARVL-- 472 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGD 537 A+V+ G +V A G V+V+ D+TPFY E GGQ+GDTG G+ Sbjct: 473 ---------------ALVRDGALVPSASCGDVVDVILDKTPFYGERGGQVGDTGTLRCGE 517 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + L + D Q +A + VH V++G + ++ ID R + NH+ATHLL AL Sbjct: 518 SV-LHVDDTQHQAHILIVHTCTVQKGSIAKGDTVSAQIDVTRRELIRRNHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HVSQ GS + PD LRFD TH + +T ++ +E VN I P+VTR++ Sbjct: 577 KQVLGKHVSQAGSLVAPDRLRFDFTHFEALTRDQIDQVEAIVNREIFAAEPMVTRVVPLA 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A + A AL Y+ VR+V + V+S LCGGTHV +T +I I+SE+S+ Sbjct: 637 EARKTDAIALFDEMYDADVRIVQTGSSEDAVYSRELCGGTHVRNTADIGYFKIISETSVG 696 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 + +RR+EA+T A ++ + +L LAS LK + +V+ RV+++ K L A + Sbjct: 697 SNVRRLEALTSCGAYEYVDAKLSELGQLASMLKCREDDVLARVDQL-----KSSLSAADK 751 Query: 778 KLQLNVEDL----------SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 KL+ + S + + + + V++K+L+S+ D +++ Sbjct: 752 KLKAALSGSSSDQVSSAVSSAYNKSGYKLVIAHVQHVEAKDLRSMWDGIRQ 802 >gi|293569836|ref|ZP_06680923.1| alanyl-tRNA synthetase [Enterococcus faecium E1071] gi|291587584|gb|EFF19461.1| alanyl-tRNA synthetase [Enterococcus faecium E1071] Length = 880 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 362/913 (39%), Positives = 525/913 (57%), Gaps = 83/913 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK +AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNKAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D II + DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+GE P PG E ERY+EIWNLVF +F + LP +IDTGMG Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286 LERM +++Q+ N++ DLF +I A E+++ +KY N + ++++VI DH+R+ SF I Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D F + ++ QR RAR A S G + +K + ++FIGY Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + D ++L ++ +GE + V+ + +++FDQTPFYAE Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G + + I +TDVQK G F+H V + + + L ID R Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + A GA AL G KY VRVV++ G S LCGGTHV++ Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T I + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810 E++ ++ R+LQ K QL L+ + DV N + I ++V D +L+ Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLR 792 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868 + D ++K S I++L +E K S+L +T++ + A DL + ++ KV GGG Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849 Query: 869 GGRPHMAQSGGPN 881 GGRP MAQ+GG N Sbjct: 850 GGRPDMAQAGGKN 862 >gi|302517973|ref|ZP_07270315.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78] gi|302426868|gb|EFK98683.1| alanyl-tRNA synthetase [Streptomyces sp. SPB78] Length = 889 Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust. Identities = 353/913 (38%), Positives = 518/913 (56%), Gaps = 82/913 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH+++PS+SLI +DPTL+ +GMVPFK F G+ KP T+V Sbjct: 4 AEIRRRWLRFFEERGHKVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT F Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADGGFG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ RL+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ + K + IL P +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ D + +I + ++TG+ Y G + V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVRNMYETDTLRVVIDKATELTGVAYGASGASDVSLRVVSDHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRIETVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G +LD + + + +L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKTLKAGTNILDTAVTETRVTGSTVLPGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A S +G + + + + GAT F GY L G Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG--- 473 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 E R V L +GV + A G +VEVV D+TPFYAE GGQ+ Sbjct: 474 --EARIVGL------LVDGVPA------------PAASEGDEVEVVLDRTPFYAEGGGQI 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG + +G ++I DVQK G+ VH V+ G + + + ID RR ++ H Sbjct: 514 GDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQGRRRAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + +A + +E +N+++A + Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLAHEM 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVRNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYQFLAREHTVVSQLQELVK-------GRPEELPEKI 741 Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812 ++++ A++ LQ + K DV+ + + +V + +L+ + Sbjct: 742 AGMLGKLKDAEKEIEKFRAEKVLQAAAGLAAGAK--DVHGTALVTGQVPDGTTADDLRRL 799 Query: 813 MDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 + ++ +I + ++ L ++ + +V + E +R F A DL R +AK L GGGG Sbjct: 800 VLDVRGRIPGDRPAVVALFAVTGGRPVTV-VATNEAARERGFKAGDLVRTAAKTL-GGGG 857 Query: 869 GGRPHMAQSGGPN 881 GG+P +AQ GG N Sbjct: 858 GGKPDVAQGGGQN 870 >gi|315640863|ref|ZP_07895962.1| alanine--tRNA ligase [Enterococcus italicus DSM 15952] gi|315483402|gb|EFU73899.1| alanine--tRNA ligase [Enterococcus italicus DSM 15952] Length = 880 Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust. Identities = 346/921 (37%), Positives = 523/921 (56%), Gaps = 79/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQVRQLFLDFFRSKGHTVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFKE AI AW+ LT D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKEDAIHFAWEFLTSPEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D EA ++W + GL+ + II I DNFW + GP GP SEIF+D+G Sbjct: 123 EKLYVTVYPKDTEAKRIWSEEIGLTPEHIIEI--EDNFWDIG-AGPSGPDSEIFYDRGPE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 YLDIAEDDPENFPGG--ENERYLEIWNLVFSEFNHKPDNTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292 ++Q N++ DLF +I + E+++ + G+++ V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQNAPTNFETDLFLPIIHSVEELSQGVHYGDSLQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE+++ + IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGQKLGIQQAFLYKLVPVVGHIMESYYPEVLKQQAFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ GL Sbjct: 358 NEEERFHETINEGLAILNEVIEDVKANNRTTLAGQAIFKLYDTYGFPVELTEEVAEDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +D + F + ++ QR RARA S+G+ S I + ++GY L Sbjct: 418 K-VDHVGFEKEMQAQRDRARAGRSKEQSMGVQSTLLTDIKVE-------SDYVGYSDLEA 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S + I+ V++ G +++F +TPFYAE G Sbjct: 470 -----------------------KSALVLIISDDAFVKKIDEG-SAQLIFAKTPFYAEMG 505 Query: 526 GQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GQ+ DTG + I +T+V+K G F+H V +G L L ++ + Sbjct: 506 GQVADTGIVVNSEGMIVADVTNVKKAPNGQFLHTVTV-KGQLIEGTEYFLQVNTAKHNKT 564 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NH+ATH+LH AL +LGSH +Q GS + P+ LRFD TH +T EL +E VN+ I Sbjct: 565 IKNHTATHMLHKALKEVLGSHANQAGSLVAPEHLRFDFTHFGQVTPEELVKMEQIVNEKI 624 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + LPVVT + + A A GA AL G KY VRVV++ S LCGG HV +T Sbjct: 625 WEALPVVTVETDIDSAKAMGAMALFGEKYGHDVRVVNI-----ADWSIELCGGNHVKNTE 679 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEE 762 +I L IVSES I AG+RRIEA+T + A Q+E+LK +AS +K Q VV +V++ Sbjct: 680 DIGLFKIVSESGIGAGVRRIEAVTSKEAYLLAREQEEQLKQVASLVKSPQLKEVVSKVDQ 739 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELKSVMDALQ 817 + ++ ++ Q + +L + S I +VN ++++ S+V+ K +L+ + D + Sbjct: 740 LQQQLKEAQKENDTLSTKLANQQASDIFTDIKEVNGVTYVASQVNVKDMNQLRQLADQWK 799 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875 +K S +++L + E K ++L+ ++E + + + A +L + ++ KV GGGGGRP MA Sbjct: 800 QKAISDVLVLATAADE-KVNLLVAMSEQAIQKGYKAGELVKAIAPKVG--GGGGGRPDMA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q+GG N A+A V+ +L Sbjct: 857 QAGGKNPAGIPDALAAVSEWL 877 >gi|257878215|ref|ZP_05657868.1| alanyl-tRNA synthetase [Enterococcus faecium 1,230,933] gi|257881004|ref|ZP_05660657.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,502] gi|257889586|ref|ZP_05669239.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,410] gi|260559260|ref|ZP_05831446.1| alanyl-tRNA synthetase [Enterococcus faecium C68] gi|293559338|ref|ZP_06675880.1| alanyl-tRNA synthetase [Enterococcus faecium E1162] gi|294622256|ref|ZP_06701310.1| alanyl-tRNA synthetase [Enterococcus faecium U0317] gi|314939752|ref|ZP_07846974.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a04] gi|314941747|ref|ZP_07848624.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133C] gi|314948292|ref|ZP_07851684.1| alanyl-tRNA synthetase [Enterococcus faecium TX0082] gi|314952380|ref|ZP_07855387.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133A] gi|314992001|ref|ZP_07857454.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133B] gi|314995701|ref|ZP_07860791.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a01] gi|257812443|gb|EEV41201.1| alanyl-tRNA synthetase [Enterococcus faecium 1,230,933] gi|257816662|gb|EEV43990.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,502] gi|257825946|gb|EEV52572.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,410] gi|260075017|gb|EEW63333.1| alanyl-tRNA synthetase [Enterococcus faecium C68] gi|291598227|gb|EFF29322.1| alanyl-tRNA synthetase [Enterococcus faecium U0317] gi|291606702|gb|EFF36094.1| alanyl-tRNA synthetase [Enterococcus faecium E1162] gi|313590092|gb|EFR68937.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a01] gi|313593436|gb|EFR72281.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133B] gi|313595497|gb|EFR74342.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133A] gi|313599425|gb|EFR78268.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133C] gi|313640981|gb|EFS05561.1| alanyl-tRNA synthetase [Enterococcus faecium TX0133a04] gi|313645273|gb|EFS09853.1| alanyl-tRNA synthetase [Enterococcus faecium TX0082] Length = 880 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 362/913 (39%), Positives = 525/913 (57%), Gaps = 83/913 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D II + DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+GE P PG E ERY+EIWNLVF +F + LP +IDTGMG Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286 LERM +++Q+ + N++ DLF +I A E+++ +KY N + ++++VI DH+R+ SF I Sbjct: 232 LERMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D F + ++ QR RAR A S G + +K + ++FIGY Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + D ++L ++ +GE + V+ + +++FDQTPFYAE Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G + + I +TDVQK G F+H V + + + L ID R Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + A GA AL G KY VRVV++ G S LCGGTHV++ Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T I + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810 E++ ++ R+LQ K QL L+ + DV N + I ++V D +L+ Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLR 792 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868 + D ++K S I++L +E K S+L +T++ + A DL + ++ KV GGG Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849 Query: 869 GGRPHMAQSGGPN 881 GGRP MAQ+GG N Sbjct: 850 GGRPDMAQAGGKN 862 >gi|293553477|ref|ZP_06674105.1| alanyl-tRNA synthetase [Enterococcus faecium E1039] gi|291602354|gb|EFF32578.1| alanyl-tRNA synthetase [Enterococcus faecium E1039] Length = 880 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 362/913 (39%), Positives = 524/913 (57%), Gaps = 83/913 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D II + DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+GE P PG E ERY+EIWNLVF +F + LP +IDTGMG Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286 LERM +++Q+ N++ DLF +I A E+++ +KY N + ++++VI DH+R+ SF I Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D F + ++ QR RAR A S G + +K + ++FIGY Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + D ++L ++ +GE + V+ + +++FDQTPFYAE Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G + + I +TDVQK G F+H V + + + L ID R Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + A GA AL G KY VRVV++ G S LCGGTHV++ Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T I + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810 E++ ++ R+LQ K QL L+ + DV N + I ++V D +L+ Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIITAQVKVKDMNQLR 792 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868 + D ++K S I++L +E K S+L +T++ + A DL + ++ KV GGG Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849 Query: 869 GGRPHMAQSGGPN 881 GGRP MAQ+GG N Sbjct: 850 GGRPDMAQAGGKN 862 >gi|318057084|ref|ZP_07975807.1| alanyl-tRNA synthetase [Streptomyces sp. SA3_actG] gi|318077856|ref|ZP_07985188.1| alanyl-tRNA synthetase [Streptomyces sp. SA3_actF] Length = 889 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 353/913 (38%), Positives = 517/913 (56%), Gaps = 82/913 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH+++PS+SLI +DPTL+ +GMVPFK F G+ KP T+V Sbjct: 4 AEIRRRWLRFFEERGHKVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT F Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADGGFG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ RL+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ + K + IL P +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ D + +I + ++TG+ Y G + V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVRNMYETDTLRVVIDKATELTGVAYGASGASDVSLRVVSDHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRIETVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G +LD ++ +L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKTLKAGTNILDTAVTETRATGSTVLPGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A S +G + + + + GAT F GY L G Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG--- 473 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 E R V L +GV + A G +VEVV D+TPFYAE GGQ+ Sbjct: 474 --EARIVGL------LVDGVPA------------PAASEGDEVEVVLDRTPFYAEGGGQI 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG + +G ++I DVQK G+ VH V+ G + + + ID RR ++ H Sbjct: 514 GDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQGRRRAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + +A + +E +N+++A + Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLAHEM 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVRNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYQFLAREHTVVSQLQELVK-------GRPEELPEKI 741 Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812 ++++ A++ LQ + K DV+ + + +V + +L+ + Sbjct: 742 AGMLGKLKDAEKEIEKFRAEKVLQAAAGLAAGAK--DVHGTALVTGQVPDGTTADDLRRL 799 Query: 813 MDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 + ++ +I + ++ L ++ + +V + E +R F A DL R +AK L GGGG Sbjct: 800 VLDVRGRIPGDRPAVVALFAVTGGRPVTV-VATNEAARERGFKAGDLVRTAAKTL-GGGG 857 Query: 869 GGRPHMAQSGGPN 881 GG+P +AQ GG N Sbjct: 858 GGKPDVAQGGGQN 870 >gi|315174460|gb|EFU18477.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1346] Length = 880 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 357/921 (38%), Positives = 525/921 (57%), Gaps = 79/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +L+FF+ GH + PS+SLIP NDPTL++ NSG+ K F G P +T Sbjct: 7 SQVRQMYLDFFKSKGHSVEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +L++TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF+D+GE Sbjct: 123 EKLHVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + K + L+G + FKLYDT G P+++ +++ GL Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +E QR RAR A S G + +K + ++F+GY Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT+ V I+Q +V EA +G E++F +TPFYAE GGQ+ Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509 Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + DV+K G F+H V + ++ L +D + R ++ NH Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + + Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I + Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740 Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEV---DSKELKSVMDALQ 817 ++ K QL N + K + D+N + +I ++V D +L+ + D + Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875 +K S +++L ++++K S+L +T+D+ + A DL + ++ KV GGGGGRP MA Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q+GG N A+A V ++L Sbjct: 857 QAGGKNPAGIADALAEVENWL 877 >gi|257078902|ref|ZP_05573263.1| alanyl-tRNA synthetase [Enterococcus faecalis JH1] gi|294779572|ref|ZP_06744966.1| alanine--tRNA ligase [Enterococcus faecalis PC1.1] gi|256986932|gb|EEU74234.1| alanyl-tRNA synthetase [Enterococcus faecalis JH1] gi|294453362|gb|EFG21770.1| alanine--tRNA ligase [Enterococcus faecalis PC1.1] Length = 880 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 356/921 (38%), Positives = 525/921 (57%), Gaps = 79/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R +L+FF+ GH + PS+SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 SQVRQMYLDFFKSKGHSVEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTGAEWLAFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D EA ++W+ GLS D II + DNFW + GP GP +EIF+D+GE Sbjct: 123 EKLYVTVYPKDTEAKRIWRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEE 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+EIWNLVF +F + LP +IDTGMGLER+ + Sbjct: 180 FLDIPEDDPENYPGG--ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I A E + T +KY V+ +VI DH+R+ SF I DG LP Sbjct: 238 IIQDAPTNFETDLFMPIIHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ + + LG E + L+P + M S YPE++Q K IE+ +R Sbjct: 298 SNEGRGYVLRRLLRRAVMHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF +T++ GL +L+ V+ + + L+G + FKLYDT G P+++ +++ GL Sbjct: 358 TEEERFHETINEGLSMLNEVIKEVKDANGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +E QR RAR A S G + +K + ++F+GY Sbjct: 418 K-VDHAGFETEMEAQRERARSARSKETSMGVQSALLTDIKVE---SKFVGY--------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT+ V I+Q +V EA +G E++F +TPFYAE GGQ+ Sbjct: 465 ------------TELTHDSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIA 509 Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + DV+K G F+H V + ++ L +D + R ++ NH Sbjct: 510 DRGYVKNTAGEVVANVVDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG H +Q GS + P LRFD TH +TS EL +E VN+ I + + Sbjct: 569 TATHLLHRALKDVLGEHANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV++T +I + Sbjct: 629 PVVTIETDIDTAKNMGAMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGI 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSES I AG+RRIEA+T + A L ++ +LK +A+ +K Q VV + E++ Sbjct: 684 FKIVSESGIGAGVRRIEAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKTEQL--- 740 Query: 767 YRKLQLIHAKRKLQL-----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQ 817 ++ K QL N + K + D+N + +I ++V+ K +L+ + D + Sbjct: 741 -QQQLRDLQKENEQLAGKLANQQAGDIFKDVKDINGVRYIAAQVNVKDMNQLRQLADQWK 799 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMA 875 +K S +++L ++++K S+L +T+D+ + A DL + ++ KV GGGGGRP MA Sbjct: 800 QKELSDVLVL-ATAQDEKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 Q+GG N A+A V ++L Sbjct: 857 QAGGKNPAGIADALAEVENWL 877 >gi|229822862|ref|ZP_04448932.1| hypothetical protein GCWU000282_00151 [Catonella morbi ATCC 51271] gi|229787675|gb|EEP23789.1| hypothetical protein GCWU000282_00151 [Catonella morbi ATCC 51271] Length = 881 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 352/923 (38%), Positives = 534/923 (57%), Gaps = 79/923 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF + H+++PS+SLIP NDPTL++ N+G+ P K F G E P + + V Sbjct: 7 ARIRQMYLDFFAEKQHQIIPSASLIPVNDPTLLWINAGVAPLKKYFDGTEVPDNRRLANV 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----FDL 120 QKC+R ND++NVG T RHHT FEMLGN+S G YFK+ I AW+ LT E F+ Sbjct: 67 QKCIRT----NDIENVGYTARHHTLFEMLGNWSIGDYFKKEVIAWAWEFLTSERWLGFEA 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +LY T Y ED+E ++WK+ G AD ++ + DNFW + GPCGP +EIF+D+G Sbjct: 123 D--KLYATYYPEDKETPEIWKQQPGFIADHLVAVA--DNFWDIG-AGPCGPDTEIFYDRG 177 Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + P PG E ER++EIWNLVF +F LP ++DTGMGLER+ Sbjct: 178 QEFNNLAADDPENYPGG--ENERWLEIWNLVFSEFNHLPDDTYQPLPNKNVDTGMGLERV 235 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGIL 291 +V+Q NY+ DLF +IQA E+V+G+ + G+ V+ +VI DH+R+ SF I+DG L Sbjct: 236 VSVIQNAKTNYETDLFVPIIQAIEKVSGVDFASAGDKQVSFKVIADHIRAVSFAISDGAL 295 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGY+LRR++RR++ + R LG + + L+P + MG+ Y EL + +++ + Sbjct: 296 PSNEGRGYILRRLIRRSVMHGRKLGISRSFLSELVPVIADIMGAYYQELTEQLAFVQKVI 355 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ERF +T++ G L+ ++++L + ++ G AF+LYDT G PL++ ++ ++G Sbjct: 356 LNEEERFHETIEGGEAHLNDLMANLKAEGKTVVPGAQAFQLYDTFGFPLELTVELADSQG 415 Query: 410 LAGIDIISFNQALEEQRSR-----ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 + +D F +E QR R ++ S+ + S + I A F+GY+ L Sbjct: 416 FS-VDQEGFETEMEAQRQRARAARSKEESMQVQSDLLQNI-------TDAFDFVGYETL- 466 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 +TN + +KAIV V++ + Q+ V F+++PFYAE Sbjct: 467 -------------------VTN---ATIKAIVLDEAKVDQLPAHQEGWVFFNRSPFYAEM 504 Query: 525 GGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+ D+G + GD Q+ DV+K +G F+H L S L +D R + Sbjct: 505 GGQVADSGIILDGDQEVGQVLDVKKAPQGQFMHRIKTGEMPLTVGQSYTLEVDRAVRLKT 564 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+ATHLLH AL +LGSH +Q GS + PD LRFD +H +T ELK IE VN I Sbjct: 565 NQNHTATHLLHRALKVVLGSHANQAGSYVGPDRLRFDFSHFGKVTPEELKQIEAFVNQWI 624 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 A + V M+ EDA A+GA AL G KY D VRVV++ E S LCGGTHV++T Sbjct: 625 ANSANVDIAEMSIEDAKATGAMALFGEKYGDVVRVVNIAGE-----SIELCGGTHVNNTN 679 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEE 762 EI +++ES I AGIRRIEA+TGQ A + Q E L+ + + LKV+Q + ++ R+E+ Sbjct: 680 EIGTFKLLAESGIGAGIRRIEALTGQAAVADYQAQAELLQEVQNHLKVAQASQLLPRLEQ 739 Query: 763 IWEEYRKLQL----IHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 + EE R+ Q ++AK LQ + + DV +++ + ++ + D Sbjct: 740 LQEELRQAQAQVESLNAKL-LQAEAGQVFQDVQSVGDVTYVAINLGNQSVDGMRQMADIW 798 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +K+ S I++LV S+E+K S+++ V E L A +L + A ++ GGGGGG+P MA Sbjct: 799 KKEAPSNILVLVA-SQEEKVSLMVQVDEQGLAAGLKAGNLIKPLAAIV-GGGGGGKPQMA 856 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q+GG + +A V++ + + Sbjct: 857 QAGGKKPEAIPELLAQVSAVINE 879 >gi|154502472|ref|ZP_02039532.1| hypothetical protein RUMGNA_00285 [Ruminococcus gnavus ATCC 29149] gi|153796868|gb|EDN79288.1| hypothetical protein RUMGNA_00285 [Ruminococcus gnavus ATCC 29149] Length = 879 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 354/911 (38%), Positives = 527/911 (57%), Gaps = 58/911 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI+ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKNEAIEWSWEFLTEVVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY ++Y+EDEEAF++W K G+ A++I R DNFW +GPCGPCSEI++D+GE Sbjct: 122 RLYPSIYEEDEEAFEIWNKKMGIPAERIFRFGKADNFWEHG-SGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QF+ L + +IDTGMGLER+A+V+Q+ Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGHGHYSELEQKNIDTGMGLERLASVVQDVD 240 Query: 242 NNYDIDLFK----HLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +D+D K H+ + ++ G + + ++ RVI DH RS +F+I+DGI+P+NEGR Sbjct: 241 SIFDVDTLKALRDHICRLADTEYGKDAQAD--ISIRVITDHTRSVTFMISDGIMPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG + L + YPEL + K I + + E+++ Sbjct: 299 GYVLRRLLRRACRHGRLLGIEGSFIPELAQTVIEGSKDGYPELEEKKDFILKVIAKEEDQ 358 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KT+D+GL +L + + + ++ L+G AFKLYDT+G P+D+ ++IL +G+ +D Sbjct: 359 FNKTIDQGLGILAEMTAKMEAEQTTTLSGADAFKLYDTYGFPIDLTKEILEEKGMQ-VDE 417 Query: 416 ISFNQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F+ ++E QR ARA + +G+ T ++ S+ +T F+GY+ Sbjct: 418 EGFHASMEVQRKTARAARGETNYMGADVT--VYESIDPSITST-FVGYE----------- 463 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 L K PI + + EIVE GQ+ V ++TPFYA +GGQ DTG Sbjct: 464 --NLAWKSPITV----------LTSDTEIVEALSDGQRGTVFAEETPFYATSGGQEADTG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D K G H +V +G+++T L +D + R + NHSATHL Sbjct: 512 IIRTAEGEFKVEDTVKLLGGKIGHVGVVIKGMIKTGDQAELCVDAEKRALSARNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL T+LG+HV Q GS + D LRFD +H +T+ EL+ +E+ VN+ I LPV Sbjct: 572 LQKALRTVLGTHVEQAGSSVNEDRLRFDFSHFSAMTAEELQKVEEIVNEQIVAGLPVKVE 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E+A +GA AL G KY D VRVV++ G +S CGGTHV +T EIM I+S Sbjct: 632 NMPIEEARKTGAQALFGEKYGDVVRVVNM-----GDYSIEFCGGTHVKNTNEIMAFKILS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ES + AG+RRIEA+T + + ++KL A LK + N+ ++ + E + L Sbjct: 687 ESGVAAGVRRIEALTSKGLIRYYDNLEKKLNEAAKVLKATPDNLAEKIAHLTAENKALHS 746 Query: 771 QLIHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ K KL Q + D+ +I V ++ + VD L+ + D L++K+ G+++L Sbjct: 747 EVESLKSKLAQDAMGDVMDQVQEIKGVKLLAAEVDGVDMNGLRDLGDQLKEKLGEGVVVL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K S+++ T+ + + +A +L + A ++ GGGGGGRP+MAQ+GG N Sbjct: 807 AS-GNDGKVSLMVTATDAAMKQGAHAGNLVKAIAGLV-GGGGGGRPNMAQAGGKNPAGIQ 864 Query: 887 QAIAGVASFLK 897 +A+ A L+ Sbjct: 865 EALKKAAEALE 875 >gi|257462579|ref|ZP_05626989.1| alanyl-tRNA synthetase [Fusobacterium sp. D12] gi|317060231|ref|ZP_07924716.1| alanyl-tRNA synthetase [Fusobacterium sp. D12] gi|313685907|gb|EFS22742.1| alanyl-tRNA synthetase [Fusobacterium sp. D12] Length = 866 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 334/902 (37%), Positives = 517/902 (57%), Gaps = 62/902 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF+ H+ S+SLIP +DPTL+ T +GMVPFK F GQ++ VTT Sbjct: 5 NEIRQKFIEFFESKAHKHFESASLIP-DDPTLLLTVAGMVPFKPYFLGQKEAPCPRVTTY 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI +W+ +T+ L + + Sbjct: 64 QKCIRT----NDLENVGRTARHHTFFEMLGNFSFGDYFKKEAIVWSWEFVTEVLGLPKDK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L++TV+ D+EA K+W + ++I+R+ ++N+W+ TG CGPCSEI D G Sbjct: 120 LWVTVFTTDDEAEKIWIEECHFPKERIVRMGESENWWAAGPTGSCGPCSEIHVDLGPAY- 178 Query: 185 GGLPGSS--EEG--ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 GG S +EG RYIEIWNLVF ++ + LPK +IDTG GLER+A ++Q K Sbjct: 179 GGDENSKIGDEGTDNRYIEIWNLVFTEWNRMEDGHLEPLPKKNIDTGAGLERIAAMVQGK 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NN++ DL L++ + ++T Y N + +VI DH R+ +FLI DG++P+NEGRG Sbjct: 239 ENNFETDLLFPLVEEAGRLTNSTYHENPEKDFSLKVITDHSRAVTFLIHDGVIPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRRI+RRA+ + RLLG E + ++ + + AYP+L I++ ++ E+E+F Sbjct: 299 YILRRILRRAVRHGRLLGQKELFLYKMVKKVVEQFAVAYPDLAANMENIQKIVKIEEEKF 358 Query: 359 GKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 TLD+G+ L++ ++ GK + L+G++ FK+YDT+G P ++ ++I +G+A + Sbjct: 359 SNTLDQGIQLVNEQIALALQAGKTK-LDGEITFKMYDTYGFPYELTEEICHEKGIA-VSQ 416 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + +EEQ+ +ARA + + + +G T+F GY +E K+ Sbjct: 417 EEFLEKMEEQKEKARAARAVIMEKGQDSFIEKFYDTHGVTEFTGYHS------SQEKAKL 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 L + D T + ++FD+TPFYAE+GGQ+GD G Sbjct: 471 LNVRTREDGT-------------------------LLLIFDKTPFYAESGGQVGDRGMIF 505 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + ++ DV+K+ E IF+H G L+ L +D + R +S NH+ATHLLH Sbjct: 506 SNAFQGKVLDVKKQKE-IFIHVVESISGELKEGEECSLEVDMKYRAAVSKNHTATHLLHK 564 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG+HV Q GS + + LRFD +H + +T ++K +E+ VN+ I++ + V + Sbjct: 565 ALREVLGTHVQQAGSLVDSEKLRFDFSHYEAMTEEQIKLVEERVNEKISEAIAVEISHKS 624 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A A GA L G KY D VRVV V S+ LCGG HV + G I L IVSE Sbjct: 625 MEEAKACGAMMLFGDKYGDTVRVVDVP-----GFSTELCGGIHVENIGHIGLFKIVSEGG 679 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK--LQLI 773 I AG+RRIEA TG A + E L+ A+ LK +V +VE++ +E ++ ++ Sbjct: 680 IAAGVRRIEAKTGYEAYRFVEENMEILQKSATLLKTESSLLVEKVEKVLQEEKEKSREIA 739 Query: 774 HAKRKL-QLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K+ + E L H ++A + +L+ ++D ++ K ++ I++L Sbjct: 740 SLKEKIAKQEAEALYSHMLEMAGAKVFMAKYEDKSMDDLRKMIDFVKDKEENAIVVLTST 799 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 S +K S + V++ L ++ A +L ++ A++ GG GGG+P AQ+GG + K +A+ Sbjct: 800 S--EKLSFAVGVSKALTSKWKAGNLVKILAEIT-GGKGGGKPDFAQAGGKDKTKIAEAME 856 Query: 891 GV 892 V Sbjct: 857 AV 858 >gi|261207793|ref|ZP_05922478.1| alanyl-tRNA synthetase [Enterococcus faecium TC 6] gi|289566245|ref|ZP_06446677.1| alanyl-tRNA synthetase [Enterococcus faecium D344SRF] gi|294616584|ref|ZP_06696360.1| alanyl-tRNA synthetase [Enterococcus faecium E1636] gi|294617900|ref|ZP_06697509.1| alanyl-tRNA synthetase [Enterococcus faecium E1679] gi|260078176|gb|EEW65882.1| alanyl-tRNA synthetase [Enterococcus faecium TC 6] gi|289161952|gb|EFD09820.1| alanyl-tRNA synthetase [Enterococcus faecium D344SRF] gi|291590534|gb|EFF22267.1| alanyl-tRNA synthetase [Enterococcus faecium E1636] gi|291595845|gb|EFF27129.1| alanyl-tRNA synthetase [Enterococcus faecium E1679] Length = 880 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 362/913 (39%), Positives = 524/913 (57%), Gaps = 83/913 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D II + DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+GE P PG E ERY+EIWNLVF +F + LP +IDTGMG Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286 LERM +++Q+ N++ DLF +I A E+++ +KY N + ++++VI DH+R+ SF I Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D F + ++ QR RAR A S G + +K + ++FIGY Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + D ++L ++ +GE + V+ + +++FDQTPFYAE Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G + + I +TDVQK G F+H V + + + L ID R Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + A GA AL G KY VRVV++ G S LCGGTHV++ Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T I + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810 E++ ++ R+LQ K QL L+ + DV N + I ++V D +L+ Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLR 792 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868 + D ++K S I++L +E K S+L +T++ + A DL + ++ KV GGG Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849 Query: 869 GGRPHMAQSGGPN 881 GGRP MAQ+GG N Sbjct: 850 GGRPDMAQAGGKN 862 >gi|225377640|ref|ZP_03754861.1| hypothetical protein ROSEINA2194_03291 [Roseburia inulinivorans DSM 16841] gi|225210504|gb|EEG92858.1| hypothetical protein ROSEINA2194_03291 [Roseburia inulinivorans DSM 16841] Length = 886 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 346/904 (38%), Positives = 508/904 (56%), Gaps = 54/904 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P + VTT Sbjct: 8 NELRRMYLEFFESKGHLKMNSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTTC 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LTK L++ R Sbjct: 68 QKCIRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIAWSWEFLTKVLGLEEDR 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFFD 178 LY ++Y ED+EAF +W K G+ A++I R + DNFW GPCGPCSEI++D Sbjct: 124 LYPSIYGEDDEAFNIWTKEVGVPAERITRFYRDPETGECDNFWEHG-AGPCGPCSEIYYD 182 Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P + +R++E+WN VF QFE K L + +IDTGMGLER+A V Sbjct: 183 RGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELSQKNIDTGMGLERLAVV 242 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +DID K + +++G KYE + + V+ R+I DH+RSS+F+I+DGI+P+N Sbjct: 243 MQDVDSVFDIDTMKAIRDRVCELSGKKYEVDAMDDVSIRLITDHIRSSTFMISDGIMPSN 302 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + R+LG M L + E YPEL + K I + L E Sbjct: 303 EGRGYVLRRIIRRAARHGRMLGIDGIFMAELAKTVINESKDGYPELEEKKDFILKVLAQE 362 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+F KT+D+GL +L+ + + ++L+GD AFKLYDT+G P+D+ +IL +G Sbjct: 363 EEKFAKTIDQGLAILEDMEKEMIASGSKVLSGDNAFKLYDTYGFPMDLTSEILEEKGFT- 421 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 ID F +A+E QR+ AR + + + + T+F+GYD L Sbjct: 422 IDEDGFKKAMEVQRTTARKNRKTTNYMGADATVYDEIDPSVTTEFVGYDKLE-------- 473 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +S V + + EIVE G+ ++ ++TPFYA GGQ GD G Sbjct: 474 ---------------TASTVTVLTSETEIVEALSDGEIGTIIVEETPFYATMGGQQGDKG 518 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 ++ D K G H + G++++ + L++D R + NHSATHL Sbjct: 519 VIYTADGTFKVEDTIKLLGGKVGHVGKMTSGMIKSGDKVTLSVDADLRGKTCKNHSATHL 578 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG+HV Q GS + RFD +H + +T+ E+ +E VND IA +L V T Sbjct: 579 LQKALREVLGTHVEQAGSYQDAERTRFDFSHFQAMTAEEIAKVEKIVNDEIAADLEVRTD 638 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M E+A +GA AL G KY ++VRVVS+ G S CGGTHV TGEI I+S Sbjct: 639 VMTVEEAKKTGAMALFGEKYGEKVRVVSM-----GEFSKEFCGGTHVKHTGEIAAFKIIS 693 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES + AG+RRIEA+TG ++ + +L+ A K + +V ++E + E + L Sbjct: 694 ESGVAAGVRRIEALTGDNVFAYYKNIEAELERAAKAAKTTPAALVEKIEHMMAEIKALNA 753 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K + E L ++ V ++ ++ VD L+ + D L+ K+ G+++L Sbjct: 754 ENESLKSKAAKEALGDVMDQVVEVKGVKLLATSVAGVDMNGLRDLGDQLKGKLGEGVVVL 813 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + K V + E + +A +L + ++ KV GGGGGRP+MAQ+GG N Sbjct: 814 ASEADGKVNLVAMATEEAMKKGAHAGNLIKAIAGKVG--GGGGGRPNMAQAGGKNPAGIP 871 Query: 887 QAIA 890 A+A Sbjct: 872 DAVA 875 >gi|257898621|ref|ZP_05678274.1| alanyl-tRNA synthetase [Enterococcus faecium Com15] gi|257836533|gb|EEV61607.1| alanyl-tRNA synthetase [Enterococcus faecium Com15] Length = 880 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 360/930 (38%), Positives = 526/930 (56%), Gaps = 83/930 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D II + DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+GE P PG E ERY+EIWNLVF +F + LP +IDTGMG Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286 LERM +++Q+ N++ DLF +I A E+++ +KY N + ++++VI DH+R+ SF I Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D F + ++ QR RAR A S G + +K + ++FIGY Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + D ++L ++ +GE + ++ + +++FDQTPFYAE Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEIAEGEAQMIFDQTPFYAE 503 Query: 524 AGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G + + I +TDVQK G F+H V + + + L ID R Sbjct: 504 MGGQVADQGWIMDEAGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + A GA AL G KY VRVV++ G S LCGGTHV++ Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T I + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVAAIVKSPQLKEVVSKA 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV----------NFMSHIISEVDSKELK 810 E++ ++ R+LQ K QL L+ + DV ++ + D +L+ Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETISGKTIIAAQVKVKDMNQLR 792 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868 + D ++K S I++L +E K S+L +T++ + A DL + ++ KV GGG Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGRP MAQ+GG N A+ +L + Sbjct: 850 GGRPDMAQAGGKNPAGIPDALKAAKEWLAQ 879 >gi|257875750|ref|ZP_05655403.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC20] gi|257809916|gb|EEV38736.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC20] Length = 880 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 357/912 (39%), Positives = 526/912 (57%), Gaps = 81/912 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL + I+ I DNFW + GPCGP SEIF Sbjct: 117 WMAFDPDKLYVTVYPKDTEAKRIWAEEVGLPPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173 Query: 177 FDQG-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+G E P PG E ERY+EIWNLVF +F Q LP +IDTGMG Sbjct: 174 YDRGPEFNDVAEDDPENYPGG--ENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286 LERM +++Q N++ DLF +I A ++G G++ ++ +VI DH+R+ SF I Sbjct: 232 LERMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIDTAFLYKLVPIVGEIMESYYPEVLEQQEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V++ + D + L G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRNEEERFHETINEGLDILNQVIAQVKADGQDTLAGQDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 GL +D F Q ++ QR+RARA S+G+ S I ++F+G Sbjct: 412 AEDEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSALLTDIKVD-------SRFVG 463 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L + + ++ Q E + ++VS + +++F +TP Sbjct: 464 YDSLEANSEL------------------------LVIIQDEALHDSVSTGEAKLIFAETP 499 Query: 520 FYAEAGGQLGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ DTG + DG I ++TDV+K G F+H A + + L+ ++ L +D Sbjct: 500 FYAEMGGQVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATI-KAPLKEGVNYFLQVDQ 558 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL +LGSH +Q GS + P LRFD +H +TS EL +E Sbjct: 559 HRRNKIIKNHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQ 618 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN I + LPVVT + + A GA AL G KY VRVV+V S LCGGT Sbjct: 619 IVNQKIWEALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNV-----ADWSIELCGGT 673 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV++T +I + IVSES I AG+RRIEA+T Q A + L ++ +LK++A +K +Q V Sbjct: 674 HVANTEDIGIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEEAQLKAIAGIVKSAQLKEV 733 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK-IADVNFMSHIISEV---DSKELKS 811 V + E++ + R+LQ + +L N + K + +VN + I ++V D +L+ Sbjct: 734 VAKTEQLQAQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQ 793 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGG 869 + D ++K S I++L + + K ++L + + ++ A DL + ++ KV GGGG Sbjct: 794 LADQWKQKDHSDILVL-ATANDGKVNLLAAMNKAANEKGLKAGDLIKEIAPKVG--GGGG 850 Query: 870 GRPHMAQSGGPN 881 GRP MAQ+GG N Sbjct: 851 GRPDMAQAGGKN 862 >gi|257866118|ref|ZP_05645771.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC30] gi|257872448|ref|ZP_05652101.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC10] gi|257800052|gb|EEV29104.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC30] gi|257806612|gb|EEV35434.1| alanyl-tRNA synthetase [Enterococcus casseliflavus EC10] Length = 880 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 357/912 (39%), Positives = 526/912 (57%), Gaps = 81/912 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL + I+ I DNFW + GPCGP SEIF Sbjct: 117 WMAFDPDKLYVTVYPKDTEAKRIWAEEVGLPPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173 Query: 177 FDQG-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+G E P PG E ERY+EIWNLVF +F Q LP +IDTGMG Sbjct: 174 YDRGPEFNDVAEDDPENYPGG--ENERYLEIWNLVFSEFNHQPDGSYEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286 LERM +++Q N++ DLF +I A ++G G++ ++ +VI DH+R+ SF I Sbjct: 232 LERMVSIVQNAPTNFETDLFLPIINAVADLSGRVNYGDSKTTDISFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIDTAFLYKLVPIVGEIMESYYPEVLEQQEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V++ + D + L G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRNEEERFHETINEGLDILNQVIAQVKADGQDTLAGQDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 GL +D F Q ++ QR+RARA S+G+ S I ++F+G Sbjct: 412 AEDEGLK-VDHQGFEQEMDAQRARARAARQTELSMGVQSALLTDIKVD-------SRFVG 463 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L + + ++ Q E + ++VS + +++F +TP Sbjct: 464 YDSLEANSEL------------------------LVIIQDEALHDSVSTGEAKMIFAETP 499 Query: 520 FYAEAGGQLGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ DTG + DG I ++TDV+K G F+H A + + L+ ++ L +D Sbjct: 500 FYAEMGGQVADTGTIVAEDGTIVAEVTDVKKAPNGQFLHTATI-KAPLKEGVNYFLQVDQ 558 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL +LGSH +Q GS + P LRFD +H +TS EL +E Sbjct: 559 HRRNKIIKNHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTSEELSQMEQ 618 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN I + LPVVT + + A GA AL G KY VRVV+V S LCGGT Sbjct: 619 IVNQKIWEALPVVTIETDIDTAKGMGAMALFGEKYGHDVRVVNV-----ADWSIELCGGT 673 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV++T +I + IVSES I AG+RRIEA+T Q A + L ++ +LK++A +K +Q V Sbjct: 674 HVANTEDIGIFKIVSESGIGAGVRRIEAVTSQEAYTLLHEEEAQLKAIAGIVKSAQLKEV 733 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL-NVEDLSCHK-IADVNFMSHIISEV---DSKELKS 811 V + E++ + R+LQ + +L N + K + +VN + I ++V D +L+ Sbjct: 734 VAKTEQLQAQLRELQKENEALASKLANQQAGDVFKDVKEVNGLRLITAKVTVKDMNQLRQ 793 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGG 869 + D ++K S I++L + + K ++L + + ++ A DL + ++ KV GGGG Sbjct: 794 LADQWKQKDHSDILVL-ATANDGKVNLLAAMNKAANEKGLKAGDLIKEIAPKVG--GGGG 850 Query: 870 GRPHMAQSGGPN 881 GRP MAQ+GG N Sbjct: 851 GRPDMAQAGGKN 862 >gi|311747311|ref|ZP_07721096.1| alanine--tRNA ligase [Algoriphagus sp. PR1] gi|311302637|gb|EAZ83190.2| alanine--tRNA ligase [Algoriphagus sp. PR1] Length = 874 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 343/900 (38%), Positives = 512/900 (56%), Gaps = 72/900 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+TF+EFFQ H+ +PSS ++ NDPTLMFTN+GM FK+ F G E P + V QK Sbjct: 6 IRSTFIEFFQSKQHQYVPSSPIVVKNDPTLMFTNAGMNQFKDAFLGNETPKFARVANSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+LLT F L + RLY Sbjct: 66 CLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTVVFKLPKERLY 125 Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++V++ D+ EA+ WKKI + D+II + DNFW M +TGPCGPCSEI D Sbjct: 126 VSVFEGDQGDGLSLDTEAYNFWKKI--VPEDRIIMGSKKDNFWEMGDTGPCGPCSEIHID 183 Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + E +PG + + E+ IEIWNLVFMQ+ + + LP +DTGMG ER+ Sbjct: 184 LRPEAELAEIPGKDLVNNDHEQVIEIWNLVFMQYNRLSDGSLKELPAKHVDTGMGFERLV 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291 +Q+K++NYD DLF + A + +G Y GN+ + RVIVDH+R+ SF IADG L Sbjct: 244 RAIQQKSSNYDTDLFAPFLNAIAKKSGKVY-GNDEQTDIAFRVIVDHIRAISFTIADGQL 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N GYV+RRI+RRA+ Y G+ EP + L + G +PE+ Q + I + Sbjct: 303 PSNNKAGYVIRRILRRAVRYGYTFFGFQEPFLYELTSLIAEHFGDVFPEVRQQQEFISKV 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E+ F +TL+ GL +LD + + L + D ++ G AF+LYDT G PLD+ I Sbjct: 363 IYEEEASFLRTLENGLKILDQIKAELQEKNDTVIPGKTAFELYDTFGFPLDLTSLIAREN 422 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL+ +D F +E+Q++R+RA S + W + E G +FIGYD L Sbjct: 423 GLS-LDEKGFLAEMEKQKTRSRA-----ASESETGDWVLVHEDEG-VEFIGYDFLE---- 471 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S+I+K +V+E G+K +VV D+TPFYAE+GGQ+ Sbjct: 472 ------------------SFSNIIKY-----RVVKEK-KGEKYQVVLDKTPFYAESGGQV 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G I D ++++ D KK + +H +V++ E+ +D + R NH+ Sbjct: 508 GDKGWLISDNEKIRVIDT-KKENDLIIH--LVDKLPSNPEVKFSAEVDRKGRALSMNNHT 564 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG H+ Q GS ++PD LRFD +H +T E+ +E+ VN I +N+P Sbjct: 565 ATHLLQSALKEVLGDHIQQRGSLVSPDLLRFDFSHFGKLTEEEITKVEEIVNTKIRENIP 624 Query: 649 VV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 +V R + E+A + GA AL G KY D VRV++ + + S LCGGTHV T +I L Sbjct: 625 LVEKRNVPIEEAKSMGATALFGEKYGDFVRVITFDPD----FSVELCGGTHVPYTSQIGL 680 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG---NVVGRVEEIW 764 I SE S +G+RRIEAIT + A +L GQ+ +K + LK + ++ ++E Sbjct: 681 FKITSEGSSASGVRRIEAITAKAAEDYLRGQENLVKEIQELLKHPKDLKKSIEALIQEKN 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + ++++L++ ++ + E L + +N + + ++ LK + L+ ++++ Sbjct: 741 DLKKEIELLYQEKAGAVKGELLKEFVAGEGINTLIAKVDLPNADSLKKLGYELKNEVENP 800 Query: 824 IIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 I+L + + K + +++ E+L+ NA + R AK + GGGGG+P A +GG N Sbjct: 801 FIILAA-NIDGKPQIAVIIDEELVKSKNLNAGQIVRDLAKEI-QGGGGGQPFFATAGGKN 858 >gi|326791257|ref|YP_004309078.1| alanyl-tRNA synthetase [Clostridium lentocellum DSM 5427] gi|326542021|gb|ADZ83880.1| alanyl-tRNA synthetase [Clostridium lentocellum DSM 5427] Length = 881 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 330/912 (36%), Positives = 495/912 (54%), Gaps = 73/912 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +++ +R +L+FF+ H S L+P ND +L+ N+GM P K FTGQE+P + +T Sbjct: 5 SLNELREMYLKFFESKMHLRAKSFPLVPHNDNSLLLINAGMAPLKPYFTGQEEPPRRRMT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKC+R G D++NVG+T RH TFFEMLGNFSFG YFKE AI+ AW+ +TK ++ Sbjct: 65 TCQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKEEAIEWAWEFVTKHLEIPV 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RL+ TVY +DEEA ++W+ GL +K+I + DNFW GPCGPCSEI+FD+G Sbjct: 121 ERLFATVYQDDEEAAEIWRNKIGLPNEKVIYMGKEDNFWEAGIDGPCGPCSEIYFDRGPE 180 Query: 183 IPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P G + +RY+E WNLVF QFE+ L + +IDTGMGLER+A ++Q Sbjct: 181 FGCDSPDCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAAMMQGV 240 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 ++ +D+D K + Q+ G+ Y N N V+ RVI DH+RS +F+ ADG+LP+NEGRG Sbjct: 241 SSIFDVDTIKAIRDHVCQLAGVTYGENYKNDVSIRVITDHIRSVTFMAADGVLPSNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YV+RR++RRA+ +A+LLG + L+ + Y EL I + L E++ F Sbjct: 301 YVMRRLLRRAVRHAKLLGIEGLFLKDLVKTVVDNSKHEYTELEDKYEYITKLLTVEEKNF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+DRGL +L + + + +L+G F L DT+G P+D+ +IL +GL D Sbjct: 361 NETIDRGLNILKAHIDEMKAEGKTVLDGKACFTLSDTYGFPIDLTHEILEEQGLKA-DEE 419 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F ++ QR +AR G ++ F+ + T F+GYD L Sbjct: 420 GFKVEMDAQRQKARDARGGSKYMGADETIFNQMDSTMKTTFVGYDKLE------------ 467 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++ + E++E A G + VV +TPFYAE+GGQ GDTG Sbjct: 468 -----------TTGTLEVLANDEELLEAAGCGDSIYVVISETPFYAESGGQAGDTGLITT 516 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++D K G F HHA V G + S T++ +R S NHSATHLL A Sbjct: 517 ATGKAVVSDTTKVIGGKFAHHAQVVEGSIEKGQSATFTVENVSRMDTSRNHSATHLLQKA 576 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ++G H+ Q GS + D LRFD TH + +T +L+ +E VN+ I + L + + M Sbjct: 577 LREVVGGHIEQAGSNVNKDRLRFDFTHFEALTHEQLEKVEALVNEKILEGLTITIKEMPI 636 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A GA AL G KY VRVV++ G +S LCGGTH+ +T I I+SE+ + Sbjct: 637 DEARKLGAMALFGEKYGQTVRVVNM-----GDYSVELCGGTHLQNTAAIGTFKIISETGV 691 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+TG+ A + L +++ +K + VV +VE + E + L+ + K Sbjct: 692 AAGVRRIEAVTGRGALHFYQTMENSLNEVSALVKAKKTEVVKKVESMTIELKNLEKENEK 751 Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K ++ I + + I E+D +LK++ D+L+ ++Q G+++L+ Sbjct: 752 LKAEIAASKAGALTEQAKTINGIKVLVSQIDELDMNDLKNMGDSLKDQLQDGVVLLMS-- 809 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG--------------GGRPHMAQS 877 + D+ N V +A SA G G GGRP+MAQ+ Sbjct: 810 -------------HVADKVNLVAMATPSAVEKGVHCGQIISAVAGVVGGKGGGRPNMAQA 856 Query: 878 GGPNGNKADQAI 889 GG + +K +AI Sbjct: 857 GGKDASKIKEAI 868 >gi|189345755|ref|YP_001942284.1| alanyl-tRNA synthetase [Chlorobium limicola DSM 245] gi|189339902|gb|ACD89305.1| alanyl-tRNA synthetase [Chlorobium limicola DSM 245] Length = 888 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 345/918 (37%), Positives = 517/918 (56%), Gaps = 84/918 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +FL+FF H+++ S+ +IP +DPTL+FTN+GM FK++F G+ Y QK Sbjct: 6 IRQSFLDFFAGKEHKIVRSAPVIPADDPTLLFTNAGMNQFKDVFLGKGSRPYVRAADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT + L + RLY Sbjct: 66 CIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAISWAWELLTSVWKLPKERLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 TV+ +D+E+F+LW+ ++ + D I+R DNFW M E+GPCGPCSEI D E G Sbjct: 126 ATVFRDDDESFQLWQTVTDIPHDHILRFGEKDNFWEMGESGPCGPCSEIHIDLTE--DGS 183 Query: 187 LPGSSEEGE-RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 G+ R IE+WNLVF+Q+ +Q LP+ +DTGMG ER+ V+Q K +NYD Sbjct: 184 GKSLVNVGDYRVIELWNLVFIQYNRQGDGRLEPLPQRHVDTGMGFERVCAVMQGKGSNYD 243 Query: 246 IDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 D+F+ L ++TG+ Y+ + RVI DH R+ +F ++DG +P+NEGRGYVL Sbjct: 244 TDVFRPLFDRITEITGVVYKATMDDPCDIAMRVIADHARTLTFALSDGAMPSNEGRGYVL 303 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ Y++ LG +EP++ L+ L MG +PEL++ + + +R+E+E F T Sbjct: 304 RRILRRALRYSKTLGCSEPILHQLVGTLAVSMGEEFPELVKQQETVSRIVRAEEESFLAT 363 Query: 362 LDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRG+ + + V+ + + GD AF+LYDT G PLD+ + ++ A +D F Sbjct: 364 LDRGIEIFNEVIAGARAAGAAAITGDDAFRLYDTFGFPLDLTR-LMAAEAGFEVDEPGFE 422 Query: 420 QALEEQRSRA---RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 ++EQ++RA R L E +WFS + + F GYD L Sbjct: 423 HCMQEQKTRARQDRKDKRQLQEDGGEWMWFSEER---TSVFTGYDSLE------------ 467 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + GVS + +V +V D+TPFYAE+GGQ GD G Sbjct: 468 ----ELSSIAGVSMLP----------------DRVLLVLDRTPFYAESGGQSGDCGWIET 507 Query: 537 DGIRLQITDVQKKAEGIF-----VHHAIVERGILRTEMSL-------VLTIDYQNRRQLS 584 RL+++D +K + I H + I ++S ++D NR+ Sbjct: 508 AEYRLKVSDTRKDGDAIVHVVTEAHDTARDSAIDPADVSFDGGKLACRASVDRANRQGTE 567 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL ILG HV Q GS ++ + LRFD +H +TS EL+S+E VN+ I Sbjct: 568 RNHTATHLLHAALRRILGQHVQQKGSFVSAERLRFDFSHFSKLTSGELESVESEVNEQIR 627 Query: 645 QNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 V+ + + ++A+ GA A G KY DRVRVV + G+ S LCGGTHV S G Sbjct: 628 SAETVIKHQDVPYDEALGKGALAFFGDKYADRVRVVEIP----GL-SIELCGGTHVDSIG 682 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEE 762 +I L IVSESS+ +G+RRIEA+TG+ A + + +L+ + LK+ ++ V ++ E Sbjct: 683 QIGLFKIVSESSVASGVRRIEALTGKAAEQLMWKEYRELQEIRHMLKLKAEEPVTAKIVE 742 Query: 763 IWEEYRKLQ-LIHAKRKLQLNVEDLSCH------KIADVNFMSHIISEVDSKELKSVMDA 815 + E ++L+ L+ R L D+ H ++ + M+ ++ VD++ L+ A Sbjct: 743 LAESKKELEKLLQEYRSSALA--DILLHALDASEEVNGIRIMARMLDHVDAEALRQATLA 800 Query: 816 LQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGGGGGR 871 L++K+ +GI+ V E K S++ + + F +A L R +AK + GGGGG+ Sbjct: 801 LREKVAGSAGILCTV---DEGKVSLIAFAGDRAVRDFGIDAGKLVREAAKNV-QGGGGGK 856 Query: 872 PHMAQSGGPNGNKADQAI 889 P A +GG N ++A Sbjct: 857 PEFATAGGKNPEGIEKAF 874 >gi|329961902|ref|ZP_08299915.1| alanine--tRNA ligase [Bacteroides fluxus YIT 12057] gi|328531125|gb|EGF57975.1| alanine--tRNA ligase [Bacteroides fluxus YIT 12057] Length = 873 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 349/919 (37%), Positives = 509/919 (55%), Gaps = 91/919 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRESFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PGS +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFL 285 G ER+ LQ KT+NYD D+F+ +++A + G Y GNN + RV+ DH+R+ +F Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIADMAGTTY-GNNQQQDIAMRVVADHIRTIAFS 297 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 298 ITDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELIAQK 357 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIM 401 LI + ++ E++ F +TL+ G+ LL+ ++ GK EI +G AF LYDT G PLD+ Sbjct: 358 DLIAKVIKEEEDSFLRTLETGIRLLEKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLT 416 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 + IL G+ DI F+ +++Q+ RAR ++ + +G W +LKE G T+F+GYD Sbjct: 417 ELILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAVETGD----WITLKE--GTTEFVGYD 468 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 + R+V + + ++V D+TPFY Sbjct: 469 YTEYETGILRYRQVKQKNQTL----------------------------YQIVLDKTPFY 500 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 501 AESGGQVGDTGVLVNEFETVEVIDT-KKENNLPIH--ITKKLPEHLEAPMMACVDTDKRA 557 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NHS THLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 558 ACAANHSCTHLLDAALREVLGDHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVNA 617 Query: 642 IIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV+ Sbjct: 618 KIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHVA 671 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-----------ASFL 749 +TG I ++ IVSESS+ AGIRRIEA TG R L + ++ L A+ Sbjct: 672 ATGNIGMVKIVSESSVAAGIRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAPDLSAAIR 731 Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809 K N G +++ E++ K + K KL +V++++ K+ + F S + V + + Sbjct: 732 KYIDEN-AGLKKQV-EDFMKEKEAQLKEKLLQSVQEINGVKV--IKFCSAM---VPADAV 784 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGG 868 K++ L+ +I + + G E K + ++++++L+ A L + +AK++ GGG Sbjct: 785 KNIAFQLRGEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGALVKEAAKLI-QGGG 843 Query: 869 GGRPHMAQSGG--PNGNKA 885 GG+PH A +GG P+G KA Sbjct: 844 GGQPHFATAGGKNPDGIKA 862 >gi|320335628|ref|YP_004172339.1| alanyl-tRNA synthetase [Deinococcus maricopensis DSM 21211] gi|319756917|gb|ADV68674.1| alanyl-tRNA synthetase [Deinococcus maricopensis DSM 21211] Length = 894 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 354/932 (37%), Positives = 509/932 (54%), Gaps = 102/932 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 + + IR +L+FF+ GH LPS SLI DPT +FT +GM PFK F G Sbjct: 8 STAEIREKYLQFFESKGHLRLPSHSLI-APDPTTLFTVAGMQPFKPQFMGSAPKFSGVPG 66 Query: 58 -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT- 115 ++ VTT QKC+R G D++NVGRT RH + FEMLGNFSFG YFK AI AW+ LT Sbjct: 67 EHRRVTTAQKCIRVG----DIENVGRTRRHLSLFEMLGNFSFGDYFKRDAIHWAWEFLTG 122 Query: 116 -KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPC 169 + LD +LY+T+Y++D+EAF W + GL + R ++NFW GPC Sbjct: 123 PEWMGLDASKLYVTIYEDDDEAFGYWTQEIGLDPSHVHRFGADENFWPADAPLKGPNGPC 182 Query: 170 GPCSEIFFDQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPK 221 GPCSEI+FD+G ++ E R++EIWNLVF QF++Q+ LP Sbjct: 183 GPCSEIYFDRGPAYGDDSWADYATTRESARFLEIWNLVFPQFDRQDPAADGSPVLADLPF 242 Query: 222 MSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRS 281 +IDTGMGLER+A+V+Q+ + Y D+FK L++ +++G YEG V+HRVI +H+RS Sbjct: 243 KNIDTGMGLERIASVVQDVPDFYSNDVFKPLVERVAELSGKPYEGEVSVSHRVIAEHVRS 302 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + +ADG++ +N GRGYV+R+I+RRA +A LLG EP + L+P + MG AYPE+ Sbjct: 303 VTMTVADGVVLSNTGRGYVIRKILRRASRHAYLLGLREPTLHKLVPLVVEAMGGAYPEVR 362 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 +E +RSE+ERF +TL+ G+ LD +L + + L+G+ AF LY T+G PLD+ Sbjct: 363 SEAARVEAAIRSEEERFLRTLESGMGRLDALLGKMERGATLSGEEAFTLYGTYGFPLDLT 422 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG---ATQFI 458 ++I G++ +D F++ALE + ARA G G +E ++ + E G AT F+ Sbjct: 423 REIAEEYGVS-VDEAGFDKALEADQELARA---GSKYGKSE-LFGVVAEVLGDLPATTFV 477 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GYD L E R V AIV GE + +G + +VV D+T Sbjct: 478 GYDELE-----AEGR------------------VLAIVSGGEPLSRLTAGSEAQVVLDRT 514 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 P YAE GG++GDTG DG + D +K G+F+H V G L +E + V + Sbjct: 515 PMYAEGGGEVGDTGVLTWDGGEAAVLDTRKTPGGVFLHTVEVLHGEL-SEGAEVRALVNP 573 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 +R+ +H+ATHLLH AL +LGS V Q GS + PD LRFD TH +++ E+ +E Sbjct: 574 DRQATERHHTATHLLHAALRAVLGSGVRQAGSLVAPDRLRFDFTHGSALSADEVAQVEAL 633 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALC 694 VN + + PV R M ++A ASGA AL G KY D VRVVSVE + D V S LC Sbjct: 634 VNRWVTADFPVTWRTMPIDEARASGAMALFGEKYGDEVRVVSVEGGVPFGDTEVASRELC 693 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ------RARSHLMGQ---------- 738 GG HV+ TGEI I+S+ ++ AG+RR+EA+ G+ R R G+ Sbjct: 694 GGAHVTRTGEIGAFVILSDENVAAGVRRVEALAGEAAVRWVRERLGAAGRAASSVNATVD 753 Query: 739 --DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---KLQLNVEDLSCHKIAD 793 E++ + + LK +QG + G K QL A+ V +L K+A Sbjct: 754 QLPERIAQVQAQLKAAQGEIAG---------LKRQLAQAQMGGGSAGSQVRELGGFKVAA 804 Query: 794 VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV 853 V +S V+ EL+ D+ ++ + + ++ G +++ T+D + R Sbjct: 805 VR-----LSGVEGNELRGAADSFLEQTGADVAVVAG-----DKGLVVKATKDAVGRGAHA 854 Query: 854 DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 GGG GGGRP MAQ+G + + A Sbjct: 855 GQLIGKLAAAGGGKGGGRPDMAQAGVQDADAA 886 >gi|297584730|ref|YP_003700510.1| alanyl-tRNA synthetase [Bacillus selenitireducens MLS10] gi|297143187|gb|ADH99944.1| alanyl-tRNA synthetase [Bacillus selenitireducens MLS10] Length = 877 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 345/918 (37%), Positives = 531/918 (57%), Gaps = 74/918 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF++ GH + PS+SL+P DP+L++ NSG+ K F G+ P + Sbjct: 7 AEVRQMYLDFFKEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPDNPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----FDL 120 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT + FD Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAILWAWEFLTDKRWIGFDA 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +L +T+Y ED+EAF++W + GL ++IIR+ +NFW + E GPCGP +EIF+D+G Sbjct: 123 D--KLAVTIYPEDDEAFEIWHQKVGLPKERIIRL--EENFWDIGE-GPCGPNTEIFYDRG 177 Query: 181 ECI------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 E P PG E ER++EIWNLVF QF LPK +IDTGMGLERM Sbjct: 178 EAYGNDPNDPEMFPGG--ENERHLEIWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMV 235 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292 +V+Q+ N+D DLF LI+ +E+++G Y ++ + +VI DH+R+ +F I+DG LP Sbjct: 236 SVIQDARTNFDTDLFVPLIEETERLSGKTYGEDDQADTAFKVIADHIRTVTFAISDGALP 295 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ YA+ LG + M L+P + + M YPE+ + I + ++ Sbjct: 296 SNEGRGYVLRRLLRRAVRYAKQLGLDDAFMYKLVPVVGSIMTEFYPEVGEKADFIAKVVK 355 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E++RF +TL G+ ++ ++ G+ +I +G+ FKLYDT+G P+D+ ++ + G Sbjct: 356 TEEDRFHETLQDGMNMIVNLIKEAKENGQTDI-SGEAVFKLYDTYGFPVDLTEEYVEEAG 414 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L +D F++ ++ QR RAR+ GS +++ S++E A+ F GY L+ Sbjct: 415 LT-VDKAGFDKEMKAQRDRARSARQDSGSMQLQDEVLGSIEE---ASSFTGYTHLQDE-- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V AIV+ G V+ A G +++ + +TPFYAE+GGQL Sbjct: 469 ---------------------GTVSAIVKDGSRVDFATEGDEIQFMLTRTPFYAESGGQL 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +G+ +++ DV+K G +H + G L+ ++ + + R+ + NH+ Sbjct: 508 ADQGTVHAEGVTVEVDDVKKAPNGQHLHIGKISEGTLKAGAAVTAEVKERMRKAIIKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS + D LRFD +H +T E+ +E VN+ I ++P Sbjct: 568 ATHLLHQALKDVLGEHVNQAGSSVGDDRLRFDFSHFGQMTEEEVNRVEAIVNEKIWASIP 627 Query: 649 VVTRIMNR--EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V IMN + A GA AL G KY VRVV V G +S LCGG HV +T EI Sbjct: 628 V--EIMNTSIDHAKEMGAMALFGEKYGKEVRVVQV-----GEYSLELCGGCHVQNTAEIG 680 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L +VSE+ I AG+RR+EA+TG+ A + Q L A+ LK +V RV+++ ++ Sbjct: 681 LFKLVSEAGIGAGVRRVEAVTGKGAYEFMNHQLAYLDEAAAKLKTKVADVPYRVDQLQKQ 740 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSKE---LKSVMDALQKK 819 R+ L + +L + D + + + +V++K+ L+ D L++K Sbjct: 741 LREKD--KEVESLSAKLSNLEAGSVLDDVETIEGIPVLYKQVEAKDMNTLRKTADTLKEK 798 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 I SGII++ ++ +K + V V + + + ++A +L + A + GGGGGGRP MAQ+GG Sbjct: 799 IPSGIIVIGAVTGDKVSIVASVSKDYVTEGYHAGNLVKEIAGMC-GGGGGGRPDMAQAGG 857 Query: 880 PNGNKADQAIAGVASFLK 897 N + +A+ V +K Sbjct: 858 KNPDALPEALKKVPELIK 875 >gi|255994094|ref|ZP_05427229.1| alanine--tRNA ligase [Eubacterium saphenum ATCC 49989] gi|255993762|gb|EEU03851.1| alanine--tRNA ligase [Eubacterium saphenum ATCC 49989] Length = 878 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 337/921 (36%), Positives = 505/921 (54%), Gaps = 82/921 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ IR FL FF+ GH S L+P +D +L+ NSGM P K F+G++ P + +TT Sbjct: 13 VNEIREKFLSFFEGKGHLRAHSFPLVPQDDDSLLLINSGMAPLKPFFSGEKTPPAERMTT 72 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D+DNVG T RH TFFEMLGNFSFG YFK+ +I+ ++ +T + Sbjct: 73 SQKCIRTG----DIDNVGHTARHGTFFEMLGNFSFGDYFKKESIEWGYEFITDVLKIPSE 128 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG--- 180 +L+ITVY +D+EA+K+W + G+ +++ R+ +DNFW + GPCGPCSEIF+D+G Sbjct: 129 KLHITVYKDDDEAYKIWNEDVGIPGERLYRLGKDDNFWEIG-NGPCGPCSEIFYDRGEEY 187 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 EC PG + +RY+E WN VF QF + + L +IDTGMGLERMA Sbjct: 188 GCGSKECSPGC------DCDRYLEFWNHVFTQFNKTQDGKYEPLSHPNIDTGMGLERMAC 241 Query: 236 VLQEKTNNYDID---LFKHLIQASEQVTGMKYEGNNI-VNHRVIVDHLRSSSFLIADGIL 291 ++Q + +DID K I+ ++ + VI DHLRS++F+++DGIL Sbjct: 242 IMQGVESIFDIDTISFIKGFIEGKAMDAKVRLSSEDFNTGLNVITDHLRSATFMLSDGIL 301 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RR++ +A LG ++ + AYPEL+ K I + Sbjct: 302 PSNEGRGYVLRRLLRRSIIHANKLGLDSDALVETAGKVIETSEGAYPELVAQKEHIFTEI 361 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 + E +F KTLD G +L+G + L ++ +IL+G+ AFKLYDT G P+++ +IL Sbjct: 362 KDECAQFKKTLDSGESILNGYIDALKEEGSDILDGERAFKLYDTFGFPIELTAEILEGFS 421 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D F + +E Q+ AR GSG L E +F GY+ Sbjct: 422 MK-VDFEGFKKHMEYQKELARKGRKNEGSGFD---MVELGESIEPCEFTGYE-------- 469 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + K + EA S V+ D+TPFY GGQ Sbjct: 470 -----------------SAAEVAKVV-----FCTEADSEGVFYVILDRTPFYPRGGGQEP 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--------ILRTEMSLVLTIDYQNRR 581 DTG + G + DV KK + I HA+ G + + T+D +NR Sbjct: 508 DTGKLVISGNEFCVLDVSKKKDVIV--HAVKFAGKEGKGSKISINKGDEVSATVDLKNRN 565 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 NH+ATHL+H AL ++ ++Q GS ++ DGLRFD+ + KP++ EL+ IE VND Sbjct: 566 AAMANHTATHLMHAALRELISKDITQAGSKVSCDGLRFDINYKKPLSYEELRDIEVWVND 625 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 IA LPV RIM +++AI SGA L KY D VRVVS+E SS LCGG HV + Sbjct: 626 RIASWLPVTKRIMKKDEAIKSGAIGLFSDKYKDDVRVVSIE-----DASSELCGGLHVDN 680 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG I IV ES++ +G RRIEAITG+ A ++L+ D + K L S K GN+ +V+ Sbjct: 681 TGYIGSFKIVKESAVSSGTRRIEAITGRAASNYLLQLDAEKKKLESLTKTQDGNIYDKVQ 740 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQ 817 +++ E + L+ +K K +D+S + V F S I+ +++ ++K + +L Sbjct: 741 KLYSEIKDLKADLSKLKKGRASDDISGSIEIKDVEGVKFGSAILGDMEIPDMKDLATSLT 800 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++ ++ +++L S+ +K ++++ ED +D+ ++A DL + A + G GGG+P MAQ Sbjct: 801 QRDKNLVLLLA--SQGEKFTMVMACGEDAVDKGYSAGDLIKQVAPIC-GAKGGGKPKMAQ 857 Query: 877 SGGPNGNKADQAIAGVASFLK 897 +GG + D V S LK Sbjct: 858 AGGGDEKLFDDVCKAVLSALK 878 >gi|29833392|ref|NP_828026.1| alanyl-tRNA synthetase [Streptomyces avermitilis MA-4680] gi|41018194|sp|Q827S4|SYA_STRAW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29610515|dbj|BAC74561.1| putative alanyl-tRNA synthetase [Streptomyces avermitilis MA-4680] Length = 890 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 350/923 (37%), Positives = 519/923 (56%), Gaps = 80/923 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L F+++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + T+V Sbjct: 4 AEIRRRWLSFYEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPWPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT D Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTTPQDKGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL+ITVY +D+EA +W+ G+ A++I R+ DN+WSM GPCGPCSEI +D+ Sbjct: 119 LDPERLWITVYLDDDEAETIWRDKIGVPAERIQRLGKKDNYWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ +K + IL P+ +IDTG+G+ER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTSKDDFEILGDLPQKNIDTGLGMERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ID +IQ + ++TG++Y + V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYEIDTSMAVIQKATELTGVEYGAAHGSDVSLRVVTDHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPELI + IE Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVDVVIAMMGQQYPELISDRQRIETVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G +LD ++ ++L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKTLKAGTNILDTAVTETKASGGQVLPGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A + +G + + + + G T FIGY Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAQSKKTGHADLGAYREIADAAGETDFIGY-------- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T G S+IV I+ G A G +VE+V D+TPFYAE GGQ+ Sbjct: 469 --------------TQTEGESTIV-GILVDGVSSPAATEGDEVEIVLDRTPFYAEGGGQI 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG + G +++ D QK G++VH +V+ G + ++ID + R+ ++ H Sbjct: 514 GDTGRIKVESGAIIEVRDCQKPVPGVYVHKGVVQVGEVTVGAKAQVSIDVRRRKAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + + + +E +N+++A++L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTTVMTDVEQQINEVLARDL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + + +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQIQELVK-------GRPEELPEKV 741 Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812 ++++ A++ LQ + K DV ++ + +V + +L+ + Sbjct: 742 SAMLGKLKDAEKEIERFRAEKVLQAAAGLVDSAK--DVRGIALVTGQVPDGTTADDLRRL 799 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869 + ++ +IQ G +V + L V+ + R A DL R +AK L GGGGG Sbjct: 800 VLDVRGRIQGGRPAVVALFTTVGGKPLTVIATNEAARERGLKAGDLVRAAAKTL-GGGGG 858 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+P +AQ GG N +AI V Sbjct: 859 GKPDVAQGGGQNPAAIGEAIDAV 881 >gi|169350062|ref|ZP_02867000.1| hypothetical protein CLOSPI_00802 [Clostridium spiroforme DSM 1552] gi|169293275|gb|EDS75408.1| hypothetical protein CLOSPI_00802 [Clostridium spiroforme DSM 1552] Length = 869 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 339/898 (37%), Positives = 510/898 (56%), Gaps = 61/898 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF+ GH++ PS SLIP +DPTL++ N+G+ K F G KP +T Sbjct: 7 NQVRKMFLDFFESKGHKVEPSHSLIPNDDPTLLWINAGVAALKKYFDGTIKPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+LLT E F D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIDFAWELLTDEKWFAFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LYITV+D DEEA+ W + G+ +++ T NFW + E GPCGP SEIF+D+GE Sbjct: 123 DKLYITVHDHDEEAYNYWVDVIGVEPSHMLK--TPGNFWEIGE-GPCGPDSEIFYDRGEK 179 Query: 183 I-PGGLP----GSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMA 234 P GL E +RYIEIWNLVF Q+ Q ++ + LP+ +IDTGMGLER+ Sbjct: 180 YDPEGLGLKLFYEELENDRYIEIWNLVFSQYNSQEGVDRNDYEELPQKNIDTGMGLERIT 239 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +++Q+ N+D D F +I +E++ + Y+ N + +RVI DH+R+ +F +ADG L N Sbjct: 240 SIIQDGETNFDTDFFLPIIHEAEKLANVSYQENKMA-YRVIADHIRTVTFALADGALFDN 298 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GRGYVLRRI+RRA+ Y + +G + M +L+ + M Y L + I + ++ E Sbjct: 299 AGRGYVLRRILRRAVRYGKQIGIEKAFMYNLVGVVSEIMKEFYDYLPEKVSYISDLVKKE 358 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E F KTL G LL G++ D I++G AFKLYDT+G P ++ +I L +D Sbjct: 359 EEAFHKTLSNGEKLLSGLIKK-NSDGIISGKDAFKLYDTYGFPFELTLEIAQESNLK-VD 416 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + L+ Q+ R+R + S T++K + +DL ++ Sbjct: 417 EEGFKEELKLQQMRSRGARVDNESMTSQK-----------PDLMAFDLPSSFEY------ 459 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 P ++ V + K V+ ++ + E+VFD T FYAE GGQ DTG Sbjct: 460 -----DPTNIRGVVIGLFKDGVKTDQLNDYG------EIVFDVTTFYAEMGGQCADTGIV 508 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D + ++ +V K +H +E G ++ L L ID + R +++ NH+ATH+L Sbjct: 509 YNDECKAKVVNVLKAPNQQHLHFVELESGSIKVGDVLTLEIDKEKRGKITANHTATHILQ 568 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++GSH++Q GS + + LRFD TH + IT+ +LK++E VND+I + + V M Sbjct: 569 AALKEVIGSHINQAGSYVDDNRLRFDFTHFEKITNEQLKAVEQKVNDVIFKGIDVEIANM 628 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++E+A+ASGA AL KY D VRVVSV G +S LCGG HV+++ I L I +E Sbjct: 629 SKEEALASGAMALFDEKYGDTVRVVSV-----GNYSKELCGGCHVTNSSNIGLFKIETEE 683 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLI 773 S+ +GIRRIEA+TG+ A L+ + E + +++S LK+ ++ VV +V + EE ++ Sbjct: 684 SVGSGIRRIEAVTGKIAYEALVLEKETVDTISSILKLKNRKEVVNKVTSLTEELNAVKKE 743 Query: 774 HAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGIIMLVG 829 +LN + + + I D+N + + E D S + K + L+ KI SGI++LV Sbjct: 744 VEALNSKLNALNAANRMNDIQDINGVKVLFVEEDMESNKAKQLAFDLRDKIDSGIVILVS 803 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 E+K S + V++D + A D+ + + G GGG+P AQ G P K D Sbjct: 804 -KFEEKCSYFVGVSKDYVASGIKAGDVVK-KINAIVDGRGGGKPDFAQGGCPVNEKID 859 >gi|37521917|ref|NP_925294.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421] gi|44888325|sp|Q7NI36|SYA_GLOVI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|35212916|dbj|BAC90289.1| alanyl-tRNA synthetase [Gloeobacter violaceus PCC 7421] Length = 871 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 344/907 (37%), Positives = 518/907 (57%), Gaps = 60/907 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N ++IR FL+FF+ H LPS+SL+P +DPT++ T +GM+PFK +F G+ + VT Sbjct: 6 NGNAIREKFLQFFESKQHRRLPSASLVP-DDPTVLLTIAGMLPFKPVFMGKRERPAPRVT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 T QKCVR ND++NVGRT RHHTFFEMLGNFSFG YFK AI AW+L+T F+L Sbjct: 65 TSQKCVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKREAIGWAWELVTGVFELPP 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGE 181 RL+++VY+EDEEA LW++++GL ++ ++ + NFW TGPCGPCSEI++D E Sbjct: 121 ERLWVSVYEEDEEALVLWQEVAGLPPVRVRKMGADSNFWESGPTGPCGPCSEIYYDFHPE 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + ++ R++EI+NLVFMQ + ++ LP+ +IDTG+GLERMA VLQ Sbjct: 181 RGEGDI--DLDDDSRFLEIYNLVFMQLNRDSEGTFSELPRKNIDTGLGLERMAQVLQGVP 238 Query: 242 NNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NNY+ DL +I+ +E ++G Y + + ++I DH R+ L+ADG+LP N GRG Sbjct: 239 NNYETDLVFPIIRKAEVLSGRDYFKADDQQKTSFKIIGDHTRAVVHLVADGVLPGNLGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRR++RR + + R+LG + + MG AYP L++++ LI L +E+ +F Sbjct: 299 YILRRLIRRMVRHGRMLGIAGSFLPQMATVAVELMGGAYPNLLESRELILTRLATEESQF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TL+ G LLD +L ++ ++G AF LYDT+G PL++ ++ RGL +D+ ++ Sbjct: 359 LQTLETGERLLDEILGR--SEKRISGVDAFMLYDTYGFPLELTMEVAAERGLE-VDVAAY 415 Query: 419 NQALEEQRSRAR--AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 +A+E+QR RAR A ++ L G + + E+ T F+GY R V Sbjct: 416 EEAMEKQRERARRAAKTVDLTQGAS----LADLER---TDFLGY------------RNVA 456 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++VK ++ +GE +E A +G V++V DQTPFY E GGQ+GD G G Sbjct: 457 SK-----------AMVKLVLFEGEPIERASAGASVQLVLDQTPFYPEGGGQIGDRGYLSG 505 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++I DVQK+ + + +H +ERG + T S+ ID +RR+ +H+ATHLL A Sbjct: 506 PDLLVRIEDVQKR-DTVILHTGRIERGTVATGDSVQAQIDLADRRRSQAHHTATHLLQAA 564 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG V Q GS + D LRFD + K ++ AE++ +ED VN IA+ + +M Sbjct: 565 LKKVLGESVQQQGSLVAFDRLRFDFSWPKALSQAEIQQVEDLVNTWIAEAHTLSQEVMPI 624 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A A GA A G KY VRV+ V GV S LCGGTHV +T EI L +VSE+ I Sbjct: 625 DQAKARGALAFFGEKYGSEVRVIDVP----GV-SIELCGGTHVRNTAEIGLFKMVSETGI 679 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ----- 771 +G+RRIEA+ G +L +D + LA KV + RV + + ++ Q Sbjct: 680 ASGVRRIEAVAGPAVLEYLRLRDTVTRQLADEFKVQVEQIPQRVAALTSDLKQAQKQIDS 739 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGI 830 L A + + + + + + LKS + L K+ + G ++L Sbjct: 740 LKAALATARAEALLGQAETTGGFRVLVADLGDTEPEALKSAAEHLLAKLGEGGAVVLGSA 799 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K S++ + + + NA AK+ GGGGGGRP++AQ+GG K A+ Sbjct: 800 PAADKVSLVAAFGKGAVAKGLNAGKFVGEVAKIT-GGGGGGRPNLAQAGGKQPEKLKNAL 858 Query: 890 AGVASFL 896 + +S L Sbjct: 859 SEASSKL 865 >gi|282878226|ref|ZP_06287022.1| alanine--tRNA ligase [Prevotella buccalis ATCC 35310] gi|281299644|gb|EFA92017.1| alanine--tRNA ligase [Prevotella buccalis ATCC 35310] Length = 872 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 333/919 (36%), Positives = 514/919 (55%), Gaps = 75/919 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +F +FF+ GH ++ S+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 3 ANEIRESFKKFFESKGHTIVASAPMVIKDDPTLMFTNAGMNQWKDIILGNKQPEPRRRAD 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI AW+ L LD + Sbjct: 63 SQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHLDPK 122 Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 LY+TV++ D EA K W+K L AD II +DNFW M +TGPCGPCSEI Sbjct: 123 DLYVTVFEGSPEENIPHDSEAEKYWRK--HLPADHIINGNKHDNFWEMGDTGPCGPCSEI 180 Query: 176 FFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 D + + LPG +++ + IEIWN+VFMQF ++ L IDTGMG E Sbjct: 181 HVDSRSDEEKAQLPGRELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGMGFE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLIADG 289 R+ +LQ K +NYD +F+ I E+++G KY E ++ V RV+ DHLR+ +F IADG Sbjct: 241 RLVRMLQGKNSNYDTGIFQPFIHEMERLSGKKYGEQEDVDVAMRVVADHLRAVAFSIADG 300 Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+N GYV+RRI+RRA+ YA LG E + LLP L EMG AYPEL+ + LI Sbjct: 301 QLPSNAKAGYVIRRILRRAVRYAYTFLGQREAFVYKLLPVLVDEMGGAYPELVAQRELIG 360 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 + ++ E++ F +TL++G+ LL+ + L GK +I +G+ AF+L+DT+G PLD+ + ++ Sbjct: 361 KVMKEEEDSFLRTLEKGINLLNNAMDELKKAGKTQI-DGEQAFRLFDTYGFPLDLTE-LI 418 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 C +D FN +++Q+ RAR + W +++ G QF+GYD Sbjct: 419 CREHGFSVDEQQFNAEMQKQKDRARN-----AAQVENSDWVEIRQ--GEQQFVGYDYTEY 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + RKV +K EV+ D TPFY E G Sbjct: 472 ECHILKYRKVTQKKNSF----------------------------YEVILDFTPFYGEMG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + + + + D K+ +H I+++ E + +D R + Sbjct: 504 GQVGDQGVLVSEHETVDVIDT-KRENNQSIH--IIKQLPQHPEADFMACVDTDKRDACAA 560 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL +AL +LG HV Q GS ++PD LRFD +H + +T E++ +E VN++I Q Sbjct: 561 NHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERLVNNLIRQ 620 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++P+ R E+A GA AL G KY D+VRVV S CGG H STG Sbjct: 621 DIPLDEHRDTPIEEAKEMGAIALFGEKYGDKVRVVRFG------PSCEFCGGIHAKSTGR 674 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L I+SESS+ AG+RR EAITG++ + ++ +K++ S ++ ++ G +E+ Sbjct: 675 IGLFKILSESSVAAGVRRFEAITGRKCEEAMYAIEDTVKAIRSLFNNAK-DLKGVIEKYM 733 Query: 765 EEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQKKI 820 +E+ + ++ + + +D + ++N ++ I + +D K ++ +++ I Sbjct: 734 DEHDTMRKEIEQFQAQAVQRTKDELIRRAENINGVTVIKAVLPIDGNAAKDLVFKIREAI 793 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S ++ ++G + ++K + ++++ED++ NA + R +AK++ GGGGG+PH A +G Sbjct: 794 PSHLLCVIGTTAQQKPLLSVMLSEDMVKDHGLNAGQMVREAAKLI-QGGGGGQPHFASAG 852 Query: 879 GPNGNKADQAIAGVASFLK 897 G N + A+ V K Sbjct: 853 GKNVDGIRAAVDKVIELAK 871 >gi|289550615|ref|YP_003471519.1| Alanyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01] gi|289180147|gb|ADC87392.1| Alanyl-tRNA synthetase [Staphylococcus lugdunensis HKU09-01] Length = 876 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 339/919 (36%), Positives = 507/919 (55%), Gaps = 75/919 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQMYIDFFVEKGHMVEPSAPLVPIDDNSLLWINSGVATLKKYFDGRETPRKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDKWMAMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ LW GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDTEAYHLWHNDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 IPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 P E ERY+E+WNLVF +F LP +IDTGMGLERMA+V Q Sbjct: 180 FGKNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLERMASVAQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 NY+ DLF +I+ E+V+G KY V +VI DH+R+ +F I+DG LPANEG Sbjct: 240 NVRTNYETDLFMPIIEEVEKVSGKKYLEIPEQDVAFKVIADHIRTIAFAISDGALPANEG 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA+ +++ L EP M L+ + M YP + + I+ ++SE+E Sbjct: 300 RGYVLRRLLRRAVRFSQTLDIQEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEE 359 Query: 357 RFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL GL +LD +++ L EI NG AFKLYDT+G P+++ ++I G+ +D Sbjct: 360 RFHETLQEGLSILDQLIAKAKLTTKEI-NGSDAFKLYDTYGFPIELTEEIATQEGIT-VD 417 Query: 415 IISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +F +++QR RAR + S+ + S LK ++F+GY+ Sbjct: 418 METFENEMQQQRDRARQARQNSQSMQIQSEV-------LKNITTKSKFVGYE-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ G+ V A +G + V +TPFYA +GGQ+ Sbjct: 463 ---------------TTDYQTEITDLIYNGQAVSHAEAGDIIYFVLKETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G D + + +V K G +H V+ G + + ++ RR + NHSA Sbjct: 508 DHGTVGNDNFEIAVEEVTKAPNGQNLHKGTVQFGHVTVNSHVDANVNKDERRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + + LRFD +H P+T+ E++ +E VN+ I + + V Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVESERLRFDFSHFGPMTNEEIEHVERRVNEEIWRGISV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M +A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMPIAEAKEMGAMALFGEKYGDVVRVVNM-----APFSLELCGGIHVQNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYR 768 I+SES AG+RRIEA+TG+ A +L G K ++LKV S V+ +V ++ EE + Sbjct: 683 IISESGTGAGVRRIEALTGRAAFLYLEGIQHKFNQTKTYLKVKSDDQVMEKVVQLQEEVK 742 Query: 769 KLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 + +R ++ N+ED ++ ++N + ++VD K ++ MD + K Sbjct: 743 HVNKQLEQRNKEITTLKMGNIED----QVEEINGFKVLATQVDIANPKAIRETMDDFKSK 798 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +Q II+L+ E K S++ V + + A D+ + A ++ GG GGGRP MAQ GG Sbjct: 799 LQDTIIILIS-EVEGKVSLIATVPKADTSKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGG 856 Query: 880 PNGNKADQAIAGVASFLKK 898 +++ + ++KK Sbjct: 857 TQPENITESLRFIKDYIKK 875 >gi|297198338|ref|ZP_06915735.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083] gi|197714390|gb|EDY58424.1| alanyl-tRNA synthetase [Streptomyces sviceus ATCC 29083] Length = 890 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 350/924 (37%), Positives = 521/924 (56%), Gaps = 82/924 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + T+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT D Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSPQDKGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ RL+ITVY +D+EA ++W ++ G+ ++I R+ DN+WSM GPCGPCSEI +D+ Sbjct: 119 LEADRLWITVYKDDDEAERIWHEVVGVPKERIQRLGMKDNYWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E + N + LP +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGIGKDNFEILGELPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ID +I+ + ++TG+ Y ++ V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYEIDTSMAVIKKATELTGVAYGDAHDSDVSLRVVTDHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P+++ L+ + MG YPEL+ + IE+ Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVLDLVDTVIAMMGQQYPELVTDRERIEKVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G +LD ++ ++L GD AF L+DT G P+D+ ++ +G Sbjct: 358 VAEENAFLKTLKAGTNILDTAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSG-TTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A + G +G + ++ ++ G T+F+GY Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAQGKKTGHAGAGAYRAIADQAGETEFLGY-------- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T S+IV I+ G A G +VE+V D+TPFYAE GGQ+ Sbjct: 469 --------------SDTESESTIV-GILVDGASSPAATEGDEVEIVLDRTPFYAEGGGQI 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG + G ++I D QK G++VH +V+ G + ID + R ++ H Sbjct: 514 GDTGRIKVDSGAVIEIRDCQKPVPGVYVHKGVVQFGEVTVGAKAHAAIDNRRRTAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + +A + +E +N+++A++L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLARDL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVRADVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTSQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIK-------GRPEELPEKV 741 Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812 ++++ A++ LQ K DV ++ + +V +L+ + Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAAGLAESAK--DVRGIAVVTGQVPDGTTPDDLRKL 799 Query: 813 MDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 + ++ +IQ G ++ L ++ K +V I E +R A DL R +AK L GGGG Sbjct: 800 VLDVRGRIQGGRAAVVALFTVNNGKPLTV-IATNEPARERGLKAGDLVRTAAKTL-GGGG 857 Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892 GG+P +AQ GG N +A+ V Sbjct: 858 GGKPDVAQGGGQNPAAIGEAVDAV 881 >gi|257884661|ref|ZP_05664314.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,501] gi|257820499|gb|EEV47647.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,501] Length = 880 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 362/913 (39%), Positives = 523/913 (57%), Gaps = 83/913 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LYITVY +D EA ++W + GL D II + DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYITVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+GE P PG E ERY+EIWNLVF +F + LP +IDTGMG Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286 LERM +++Q+ N++ DLF +I A E+++ +KY N + ++++VI DH+R+ SF I Sbjct: 232 LERMVSIVQDAPTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 D LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K Sbjct: 292 GDDALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D F + ++ QR RAR A S G + +K + ++FIGY Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGY--- 464 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + D ++L ++ +GE + V+ + +++FDQTPFYAE Sbjct: 465 ---TEQESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G + + I +TDVQK G F+H V + + + L ID R Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + A GA AL G KY VRVV++ G S LCGGTHV++ Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T I + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810 E++ ++ R+LQ K QL L+ + DV N + I ++V D +L+ Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLR 792 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGG 868 + D ++K S I++L +E K S+L +T++ + A DL + ++ KV GGG Sbjct: 793 QLADQWKQKNISDILVLAN-EQEGKVSLLAAMTKESNEAGLKAGDLIKAIAPKVG--GGG 849 Query: 869 GGRPHMAQSGGPN 881 GGRP MAQ+GG N Sbjct: 850 GGRPDMAQAGGKN 862 >gi|302550143|ref|ZP_07302485.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736] gi|302467761|gb|EFL30854.1| alanyl-tRNA synthetase [Streptomyces viridochromogenes DSM 40736] Length = 890 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 354/924 (38%), Positives = 516/924 (55%), Gaps = 82/924 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + T+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFSRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT D Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSPQDKGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL+ITVY +D+EA ++W ++ G+ ++I R+ DN+WSM GPCGPCSEI +D+ Sbjct: 119 LDPERLWITVYKDDDEAERIWHEVVGVPKERIQRLGMKDNYWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+ E K IL P +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYVRGEGTGKDSFEILGELPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ID +I + ++TG++Y ++ V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYEIDTSMAVINKATELTGVRYGDAHDSDVSLRVVTDHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPELI + IE+ Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLVDTVIEMMGQQYPELITDRERIEKVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G +LD + + +L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEENAFLKTLKAGTNILDTAVTDTKAAGSTVLPGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSG-TTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A + +G + + ++ GAT FIGY Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAQAKKTGHAGAGAYREIADQAGATDFIGY-------- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T S+IV I+ G A G +VE+V D+TPFYAE GGQ+ Sbjct: 469 --------------TDTESESTIV-GILVDGASSPAATEGDEVEIVLDRTPFYAEGGGQI 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG + G ++I D QK G++VH +V+ G + +ID + R ++ H Sbjct: 514 GDTGKIKVDTGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAHASIDGRRRTAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + +A + +E +N+++A++L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLARDL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVQAEVMGIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIK-------GRPEELPEKV 741 Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812 ++++ A++ LQ K DV ++ + +V + +L+ + Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAAGLAESAK--DVRGIAVVTGQVPDGTTADDLRKL 799 Query: 813 MDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 + ++ +IQ G ++ L ++ K +V I E +R A DL R +AK L GGGG Sbjct: 800 VLDVRGRIQGGRPAVVALFAVANGKPLTV-IATNEAARERGLKAGDLVRTAAKTL-GGGG 857 Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892 GG+P +AQ GG N A+ V Sbjct: 858 GGKPDVAQGGGQNPAAVGDAVDAV 881 >gi|282880930|ref|ZP_06289621.1| alanine--tRNA ligase [Prevotella timonensis CRIS 5C-B1] gi|281305153|gb|EFA97222.1| alanine--tRNA ligase [Prevotella timonensis CRIS 5C-B1] Length = 875 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 333/917 (36%), Positives = 513/917 (55%), Gaps = 75/917 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F +FF+ GH ++ S+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 3 MMTANEIRESFKKFFESKGHTIVASAPMVIKDDPTLMFTNAGMNQWKDIILGNKQPEPRR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI AW+ L L Sbjct: 63 RADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVGVLHL 122 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D EA K W+K L AD II +DNFW M +TGPCGPC Sbjct: 123 DPKDLYVTVFEGSPEENIPHDSEAEKYWRK--HLPADHIINGNKHDNFWEMGDTGPCGPC 180 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + + LPG +++ + IEIWN+VFMQF ++ L IDTGM Sbjct: 181 SEIHVDSRSDEEKAQLPGRELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGM 240 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLI 286 G ER+ +LQ K +NYD D+F+ I E+++G KY E ++ V RV+ DHLR+ +F I Sbjct: 241 GFERLVRMLQGKNSNYDTDIFQPFIHEMERLSGKKYGEQEDVDVAMRVVADHLRAVAFSI 300 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N GYV+RRI+RRA+ YA LG E + LLP L EMG AYPEL+ + Sbjct: 301 ADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQREAFVYKLLPVLVDEMGGAYPELVAQRE 360 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LI + ++ E++ F +TL++G+ LL + L GK +I +G+ AF+L+DT+G PLD+ + Sbjct: 361 LIGKVMKEEEDSFLRTLEKGINLLSNAMDELKKAGKTQI-DGEQAFRLFDTYGFPLDLTE 419 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 ++C +D F+ +++Q+ RAR + W +++ G QF+GYD Sbjct: 420 -LICREHGFSVDEQQFHAEMQKQKDRARN-----AAQVENSDWVEIRQ--GEQQFVGYDY 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + + RKV +K EV+ D TPFY Sbjct: 472 TEYECHILKYRKVTQKKNSF----------------------------YEVILDFTPFYG 503 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ+GD G + + + + D K+ +H I+++ E + ++ R Sbjct: 504 EMGGQVGDQGVLVSEHETVDVIDT-KRENNQSIH--IIKQLPQHPEADFMACVETDKRDA 560 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NH+ATHLL +AL +LG HV Q GS ++PD LRFD +H + +T E++ +E VND+ Sbjct: 561 CAANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERLVNDL 620 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I Q++P+ R E+A GA AL G KY D+VRVV S CGG H S Sbjct: 621 IRQDIPLDEHRDTPIEEAKEMGAVALFGEKYGDKVRVVRFG------PSCEFCGGIHAKS 674 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG I L I+SESS+ AG+RR EAITG++ + ++ +K++ S ++ ++ G +E Sbjct: 675 TGRIGLFKIISESSVAAGVRRFEAITGRQCEEAMYAIEDTVKAIRSLFNNAK-DLKGVIE 733 Query: 762 EIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQ 817 + +E+ + ++ + + +D + VN ++ I + +D K ++ ++ Sbjct: 734 KYMDEHATMRKEIEQFQAQAVQRTKDELIKRAETVNGVTVIKAVLPIDGNAAKDLVFKIR 793 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMA 875 + I S ++ ++G + ++K + +++++D++ NA + R +AK++ GGGGG+PH A Sbjct: 794 EAIPSHLLCVIGSTAQQKPLLSVMLSDDMVKEQGLNAGQMVREAAKLI-QGGGGGQPHFA 852 Query: 876 QSGGPNGNKADQAIAGV 892 +GG N + A+ V Sbjct: 853 SAGGKNVDGISAAVDKV 869 >gi|23099464|ref|NP_692930.1| alanyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] gi|33301696|sp|Q8EPS9|SYA_OCEIH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|22777693|dbj|BAC13965.1| alanyl-tRNA synthetase [Oceanobacillus iheyensis HTE831] Length = 879 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 340/914 (37%), Positives = 527/914 (57%), Gaps = 68/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F++FF++ H + PS+SL+P DPTL++ NSG+ K F G+ P + Sbjct: 7 AEIRQMFIDFFKEKSHSVEPSASLVPHEDPTLLWINSGVATLKKYFDGRVIPDNPRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ A++ AW+ LT E + D+ Sbjct: 67 QKSIRT----NDIENVGYTARHHTFFEMLGNFSIGDYFKKEAMEWAWEFLTDEKWINFDE 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +TV+ ED+EA+ +W G+ ++IIRI +NFW + E GP GP +EIF+D+GE Sbjct: 123 ALLSVTVHPEDDEAYDIWLNDIGIPKERIIRI--EENFWDIGE-GPSGPNTEIFYDRGES 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E RY+E+WNLVF QF LPK +IDTGMGLER+ ++ Sbjct: 180 YGNDPQDPELYPGG--ENNRYLEVWNLVFSQFNHNPDDTYTPLPKKNIDTGMGLERLTSI 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPA 293 +Q+ N++ DLF +I+ +E+++ KY GN+ + +VI DH+R+ SF I DG +P+ Sbjct: 238 IQQVPTNFETDLFMPIIRETERISKRKY-GNSEAEDTSFKVIADHIRTVSFAIGDGAMPS 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ +A+ LG EP M L+P + M YPE+ + I ++ Sbjct: 297 NEGRGYVLRRLIRRAIRFAKDLGVNEPFMYQLVPVVGDIMKDFYPEVQKDAGYISNVIKV 356 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ERF +TL+ GL++L ++ K E+ G+ F+LYDT+G P ++ ++ + +G Sbjct: 357 EEERFHETLNDGLIILASIIEEERKKGSEVFPGEEVFRLYDTYGFPKELTEEYVEQQGFT 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ++ +++ + +QR RAR + S + F+ E + F+GYD L+ Sbjct: 417 -VNQAGYDKEMNKQRERARNARQKVDSMQVQDTIFT--EINVDSTFVGYDQLQKE----- 468 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + ++A+V+ +EEA G + V +TPFYAE+GGQ+ D Sbjct: 469 ------------------TTIEALVKDKNQIEEANQGDVLYVFLKETPFYAESGGQVADN 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + ++DVQK G +H ++ G + + ++ R + NH+ATH Sbjct: 511 GWIYSENASAYVSDVQKSPNGDHIHQIEIKEGSFKINQPVHAVVERTFRNHVIKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LGSHV+Q GS + P+ LRFD +H +T+ EL+ IE VN+ I ++LPV Sbjct: 571 LLHQALKDVLGSHVNQAGSLVRPERLRFDFSHFHGVTAEELQQIELKVNEKIWESLPVAI 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 ++A A GA AL G KY D VRVV + G +S LCGG HV +T EI L IV Sbjct: 631 DSKKIDEAKAMGAMALFGEKYGDIVRVVQI-----GDYSIELCGGCHVINTAEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEY 767 E+ I AG RRIEA+T ++A +L + + L + A LK S+ + R+E E+ + Sbjct: 686 QETGIGAGTRRIEAVTSKQAYDYLNTKLDLLHNSAQKLKTSEEQLPERIEGLQVELKDSQ 745 Query: 768 RKLQLIHAKRKLQLNVEDLS----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +++ + AK N+E S +I+ V ++ ++ D +L+S+MD L++K+ SG Sbjct: 746 KQVDSLSAKLS---NLEASSILDEVKEISGVPVLAQEVNVKDMNQLRSMMDELKQKLSSG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I+L K ++ VT+D+L++ +A ++ + +A V GGGGGGRP MAQ+GG + Sbjct: 803 VILLAA-ENNGKVQLVAGVTKDMLEKNMHAGNIVKQAATVC-GGGGGGRPDMAQAGGKDP 860 Query: 883 NKADQAIAGVASFL 896 +K +A+ V ++ Sbjct: 861 SKIKEALQSVEQYI 874 >gi|315658110|ref|ZP_07910982.1| alanine--tRNA ligase [Staphylococcus lugdunensis M23590] gi|315496439|gb|EFU84762.1| alanine--tRNA ligase [Staphylococcus lugdunensis M23590] Length = 876 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 338/919 (36%), Positives = 507/919 (55%), Gaps = 75/919 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +++FF + GH + PS+ L+P +D +L++ NSG+ K F G+E P + Sbjct: 7 SEIRQMYIDFFVEKGHMVEPSAPLVPIDDNSLLWINSGVATLKKYFDGRETPRKPRIVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI+ AW+ LT K ++ Sbjct: 67 QKAIRT----NDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDKWMAMEP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T++ ED EA+ LW GL +IIRI NFW + E GP GP +EIF+D+GE Sbjct: 123 DKLYVTIHPEDTEAYHLWHNDIGLEESRIIRI--EGNFWDIGE-GPSGPNTEIFYDRGEA 179 Query: 183 IPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 P E ERY+E+WNLVF +F LP +IDTGMGLERMA+V Q Sbjct: 180 FGKNDPAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYTPLPNKNIDTGMGLERMASVAQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 NY+ DLF +I+ E+V+G KY V +VI DH+R+ +F I+DG LPANEG Sbjct: 240 NVRTNYETDLFMPIIEEVEKVSGKKYLEIPEQDVAFKVIADHIRTIAFAISDGALPANEG 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA+ +++ L EP M L+ + M YP + + I+ ++SE+E Sbjct: 300 RGYVLRRLLRRAVRFSQTLDIQEPFMYKLVDIVADIMEPYYPNVKEKADFIKRVIKSEEE 359 Query: 357 RFGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL GL +LD +++ L EI NG AFKLYDT+G P+++ ++I G+ +D Sbjct: 360 RFHETLQEGLSILDQLIAKAKLTTKEI-NGSDAFKLYDTYGFPIELTEEIATQEGIT-VD 417 Query: 415 IISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +F +++QR RAR + S+ + S LK ++F+GY+ Sbjct: 418 METFENEMQQQRDRARQARQNSQSMQIQSEV-------LKNITTKSKFVGYE-------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T + + ++ G+ V A +G + V +TPFYA +GGQ+ Sbjct: 463 ---------------TTDYQTEITDLIYNGQAVSHAEAGDIIYFVLKETPFYAVSGGQVA 507 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G D + + +V K G +H ++ G + + ++ RR + NHSA Sbjct: 508 DHGTVGNDNFEIAVEEVTKAPNGQNLHKGTIQFGHVTVNSHVDANVNKDERRDIQKNHSA 567 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV+Q GS + + LRFD +H P+T+ E++ +E VN+ I + + V Sbjct: 568 THLLHAALKEVLGDHVNQAGSLVESERLRFDFSHFGPMTNEEIEHVERRVNEEIWRGISV 627 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + M +A GA AL G KY D VRVV++ S LCGG HV +T EI L Sbjct: 628 NIQEMPIAEAKEMGAMALFGEKYGDVVRVVNM-----APFSLELCGGIHVQNTSEIGLFK 682 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYR 768 I+SES AG+RRIEA+TG+ A +L G K ++LKV S V+ +V ++ EE + Sbjct: 683 IISESGTGAGVRRIEALTGRAAFLYLEGIQRKFNQTKTYLKVKSDDQVMEKVVQLQEEVK 742 Query: 769 KLQLIHAKRKLQL------NVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 + +R ++ N+ED ++ ++N + ++VD K ++ MD + K Sbjct: 743 HVNKQLEQRNKEITTLKMGNIED----QVEEINGFKVLATQVDIANPKAIRETMDDFKSK 798 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +Q II+L+ E K S++ V + + A D+ + A ++ GG GGGRP MAQ GG Sbjct: 799 LQDTIIILIS-EVEGKVSLIATVPKADTSKIKAGDIIKNMAPIV-GGKGGGRPDMAQGGG 856 Query: 880 PNGNKADQAIAGVASFLKK 898 +++ + ++KK Sbjct: 857 TQPENITESLRFIKDYIKK 875 >gi|238018985|ref|ZP_04599411.1| hypothetical protein VEIDISOL_00847 [Veillonella dispar ATCC 17748] gi|237864469|gb|EEP65759.1| hypothetical protein VEIDISOL_00847 [Veillonella dispar ATCC 17748] Length = 871 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 343/900 (38%), Positives = 505/900 (56%), Gaps = 59/900 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF+ GH L S SLIP NDP+L+ +GM P K FTG+ P +TT Sbjct: 4 NELRQAYLQFFESKGHLKLDSFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCHRITTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD+ R Sbjct: 64 QKCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+TVY +D+EA+ W G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 120 LYVTVYPDDQEAYDTWHNDCGVEESHITRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176 Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 C P PG + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL +I+A+ + G+ Y + N V+ +VI DH R+ + LI+DG+LP+NEGRG Sbjct: 235 KTNFETDLIYPIIEATAKRAGVTYNEDPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG + L+ + +G + + + ++ +++E+ERF Sbjct: 295 YVLRRILRRAVRHGRLLGIESIFLTPLIDVVVDILGPGIKSIAEKQDFVKRVVQNEEERF 354 Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGTEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A++EQR RAR + ++ AT I + L+ + + ED V Sbjct: 414 GFEAAMKEQRERAREARVK-------------EDAKVATPDITF--LKDEELL-EDEAV- 456 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 +S V I + E ++ A G ++ V+ TPF+AE GGQLGDTG +G Sbjct: 457 -----------TASSVLMIGKGSERLQTAADGDEITVIVRTTPFHAEGGGQLGDTGFIVG 505 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH A Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVTLEVDTNRRAAMARNHTATHLLHAA 565 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV+Q GS +TPD LRFD TH P+T EL IE VN+ I + + M+ Sbjct: 566 LKKVLGEHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEILKATDLAIAEMSM 625 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A A GA AL G KY D VRVV V S LCGG+HV +T I + SE+ I Sbjct: 626 DEAKAKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFISSFRLTSEAGI 680 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEAITG+ A + ++ +A LK V R+ ++ E ++ +L Sbjct: 681 GSGVRRIEAITGRAALNAAKHDRLTIERMAGELKTKAPQVEERLHQVLAEAKETAKELEQ 740 Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830 ++++ I DV F++ + EL+ + D L + SG++++ Sbjct: 741 IRKEVSAAGAADIIAGKVMIGDVAFVAAAVKASSIDELRDLADMGLDQLNGSGVVLVGAA 800 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + + V++D++ + A ++ + +A+V GG GGGRP MAQ+GG K +A+ Sbjct: 801 MGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLAEAL 859 >gi|325265418|ref|ZP_08132142.1| alanine--tRNA ligase [Clostridium sp. D5] gi|324029419|gb|EGB90710.1| alanine--tRNA ligase [Clostridium sp. D5] Length = 879 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 352/896 (39%), Positives = 520/896 (58%), Gaps = 60/896 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNQLRKMFLEFFESKGHLAMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ AI+ +W+ LT+ LD Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKDDAIKWSWEFLTEVVGLDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF++W K G+ A++I + DNFW +GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLDDDEAFEIWNKKMGIPAERIFKFGKEDNFWEHG-SGPCGPCSEIYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QF+ K L + +IDTGMGLER+A+V+Q+ Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGKGNYVELEQKNIDTGMGLERLASVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L ++ Y E N V+ RVI DH+RS +F+I+DGI+P+NEGRGY Sbjct: 241 SIFDVDTIKALRDHVCRLADAAYGNEDNTDVSIRVITDHVRSVTFMISDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM--GS--AYPELIQAKLLIEETLRSED 355 VLRR++RRA + RLL + + LPAL + GS YPEL + K I + + E+ Sbjct: 301 VLRRLLRRACRHGRLLN----IEGNFLPALAETVIEGSKDGYPELEEKKDFILKVIAKEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F T+D+GLV+L +++ + K + L+GD AFKLYDT+G P+D+ ++IL + + + Sbjct: 357 EQFNNTIDQGLVILSDMIAGMEKRGEITLSGDDAFKLYDTYGFPIDLTKEILEEKEM-NV 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F+ A+E QR ARA + G+ + G ++ S+ +T F+GYD L Sbjct: 416 DEEGFHAAMEIQRKTARA-ARGVTNYMGADVTVYESIDPSITST-FVGYDNLV------- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + + + E+ E G++ + +TPFYA +GGQ D+ Sbjct: 467 ----------------YESEITVLTSETEVAEALSDGERGTIFVKETPFYATSGGQEADS 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G ++ D K G H V +G+++T L +D + R + NHSATH Sbjct: 511 GVIRTPEGEFKVEDTIKLLGGKIGHVGHVVKGMVKTGDKAELAVDARKRSLSARNHSATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL T+LG+HV Q GS + D LRFD TH ++ ELK +E+ VN+ IA+ LPV Sbjct: 571 LLQKALRTVLGTHVEQAGSSVNEDRLRFDFTHFSALSQEELKQVENIVNEHIAEALPVDI 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M E+A +GA AL G KY D VRVV++ G S CGGTHV +T EIM I+ Sbjct: 631 QNMPIEEARKTGAQALFGEKYGDIVRVVNM-----GGFSIEFCGGTHVKNTSEIMAFKII 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ + AG+RRIEA+T Q + + K+ A LK S N+ ++ + E + L Sbjct: 686 SETGVAAGVRRIEALTSQGLLDYYDALEVKMNEAAKLLKASSDNLAEKITHVMAENKTLH 745 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 K +L + + ++ V ++ + VD L+ + D +++K+ G+++ Sbjct: 746 SEVESLKSRLAQDAMGDVMDQVREVKGVKLLAAEVDGVDMNGLRDLGDQMKEKLGEGVVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L S + K S+++ T+ + + +A +L + A ++ GGGGGGRP+MAQ+GG N Sbjct: 806 LASGS-DGKVSLMVTATDGAMKQGAHAGNLVKAIAGLV-GGGGGGRPNMAQAGGKN 859 >gi|189463200|ref|ZP_03011985.1| hypothetical protein BACCOP_03913 [Bacteroides coprocola DSM 17136] gi|189430179|gb|EDU99163.1| hypothetical protein BACCOP_03913 [Bacteroides coprocola DSM 17136] Length = 872 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 343/926 (37%), Positives = 505/926 (54%), Gaps = 88/926 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F++FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VT QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI A++ L L Sbjct: 61 VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAYEYLVSVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D+EA W + D II +DNFW M +TGPCGPC Sbjct: 121 DPKDLYVTVFEGSPSEGISRDDEAAGYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGEC-IPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D +PG +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDSRSAEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGTLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+A ++G KY + V+ RV+ DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKAIGDLSGKKYGDDEKVDVTMRVVADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ YA LG + M LLP L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLLPVLIENMGGAYPELKAQQA 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD ++ GK EI D AF LYDT G P D+ + Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLDKTMAETKAAGKTEISGVD-AFTLYDTFGFPFDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL GL D+ F +++Q+ RAR ++ + +G W +LKE G T F+GY Sbjct: 418 LILRENGLTA-DVKGFEAEMQKQKERAR-NAAAVETGD----WVTLKE--GETTFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V TPF Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------YQIVLSDTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + + I D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQIGDTGVLVSEFETIDIIDT-KKENNLPIH--IAKKLPEHLEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHS THLL AL +LG+HV Q GS +TPD LRFD +H + +T +++ +E VN Sbjct: 557 AACAANHSCTHLLDEALRQVLGAHVEQKGSLVTPDSLRFDFSHFQKVTPEQIREVEHLVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I +N+P+ R + E A GA AL G KY D VRVV S CGGTHV Sbjct: 617 AKIRENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756 S+TG+I ++ I+SESS+ AGIRRIEA+TG + + + L + + + + Sbjct: 671 SATGKIGMVKIISESSVAAGIRRIEAVTGAKVEEMFDTVQDAINDLKALFNNAPDLKAAI 730 Query: 757 VGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 +EE EE+ K + K KL ++++ K+ + + + +K Sbjct: 731 SKYIEENAGLKKQMEEFMKEKEAAVKNKLIEGAKEINGVKVI------QAVLPMPADAVK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 ++ L+ + + +++G E K + + +++D + NA L R +AK++ GGGG Sbjct: 785 NIAFQLKGQFPENLFVVIGSVFENKPLLTVTMSDDQVKAGLNAGQLVREAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASF 895 G+PH A +GG N + A+ + S Sbjct: 844 GQPHFATAGGKNPDGLSAAVDKIVSL 869 >gi|317475197|ref|ZP_07934464.1| tRNA synthetase class II [Bacteroides eggerthii 1_2_48FAA] gi|316908650|gb|EFV30337.1| tRNA synthetase class II [Bacteroides eggerthii 1_2_48FAA] Length = 873 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 345/923 (37%), Positives = 510/923 (55%), Gaps = 87/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PGS +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADSSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G Y N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGTTYGVNEQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNVQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LI + ++ E++ F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ DI F+ +++Q+ RAR ++ + +G W +L+E G T+F+GY Sbjct: 418 LILRENGMTA-DIKEFDAEMQQQKQRAR-NAAAVETGD----WITLQE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D+TPF Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------YQIVLDKTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHLEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS + D LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGDHVEQKGSLVNSDSLRFDFSHFQKVTDEEIRQVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756 ++TG I ++ IVSESS+ AG+RRIEA TG R L + ++ L + + G + Sbjct: 671 AATGNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAPDLSGAI 730 Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 +EE E++ K + K KL N+++++ K+ + F + +I + +K Sbjct: 731 RKYIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKV--IKFCAAMIP---ADAIK 785 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G E K + ++++++L+ A +L + +AK++ GGGG Sbjct: 786 NIAFQLRGEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 844 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + A+ V Sbjct: 845 GQPHFATAGGKNPDGLSAAVDKV 867 >gi|150015988|ref|YP_001308242.1| alanyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052] gi|205830028|sp|A6LSF6|SYA_CLOB8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149902453|gb|ABR33286.1| alanyl-tRNA synthetase [Clostridium beijerinckii NCIMB 8052] Length = 879 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 332/901 (36%), Positives = 528/901 (58%), Gaps = 54/901 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L+FF+ H + S SL+P ND +L+ N+GM P K FTG ++P + +TT Sbjct: 6 TNDLREAYLKFFESKDHLRMDSFSLVPKNDKSLLLINAGMAPLKPYFTGLQEPPKRRITT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG T+RH TFFEMLGNFSF YFK+ I AW+ +T+ +L + Sbjct: 66 CQKCIRTG----DIENVGITSRHGTFFEMLGNFSFADYFKKEIIPWAWEFITEVLELPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY+T+Y +D+EA++ W ++ + I R+ DNFW GPCGPC+EI F++ E I Sbjct: 122 RLYVTIYLDDDEAYEYWTTLTDVDKTHIFRLGKEDNFWEHG-AGPCGPCTEIHFNRSEEI 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 P + + ++ IE WNLVF QF+ K L +IDTGMGLER+AT++QEK Sbjct: 181 PTNADEFVKLADEDKIIEFWNLVFTQFDGDGKGNYEKLANTNIDTGMGLERLATIMQEKN 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + ++ID ++++ ++ +KY N ++ R+I DH+RS +F+I+D ++P+NEGRGY Sbjct: 241 SIFEIDTLENILSEVAKLANVKYGENQKTDISLRLITDHIRSITFMISDDVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + + LG E + +L + + AYPEL K I++ ++ E+++F Sbjct: 301 VLRRLLRRAARHGKTLGIKEAFLCNLCDTVIRDSSEAYPELNSKKEYIKKVIKIEEDKFR 360 Query: 360 KTLDRGLVLLDGVLSHL-GKDE-ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +TLD G+ +L+G +S L K+E +L+G FKLYDT G P+++ ++IL GL+ +D + Sbjct: 361 ETLDSGMEILNGFISELKAKNEKVLSGVDGFKLYDTFGFPMELTKEILEDEGLS-LDEDA 419 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F++ ++ QR RAR A + GT K + + T F GYD Sbjct: 420 FHEEMKVQRERARSARKVSNYMGTDVKTLDIIPAEV-ETVFDGYD--------------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + +++ VK +++ + + G K +V D TP YAE GGQ+GDTG Sbjct: 464 --------NDTLNAEVKVLIEGEDFTDAITEGNKAIIVTDVTPLYAEMGGQIGDTGVIFN 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG + + D +K G VH V G L+ ++ + +D R + NH+ATHLL A Sbjct: 516 DGFKANVLDTKKNIGGKIVHFVEVVSGELKVGDTVTIEVDKVRRENIKKNHTATHLLDKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L+ +LGSHV Q GS ++ D LRFD +H + +T E+ +ED VN+ I PVVT +M+ Sbjct: 576 LTEVLGSHVHQAGSYVSNDRLRFDFSHFEAMTEEEINKVEDLVNEAITSVTPVVTEVMDL 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A SGA + KY D+VRVVS G +S LCGGTH+ +TG+I L I+SES I Sbjct: 636 QEAKNSGAIGIFDDKYADKVRVVS-----AGEYSKELCGGTHIDNTGKIGLFKIISESGI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR----VEEIWEEYRKLQL 772 AG RRIEA+ G+ A + + + LK +++ LK S+ ++ + V+E+ E+ +++ Sbjct: 691 AAGTRRIEAVIGKEAYKIVNEKKDLLKEISTKLKCSEKELLAKLDQQVKELKEKDKEITA 750 Query: 773 IHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +K + ++D+ S + D+N +S+ + +VDS L+ V + ++ K + I++L+ Sbjct: 751 LKSKFA-SMGIDDIVSSSRNVKDINVISYELKDVDSDTLRDVCEKVRDKAPNSIVLLMS- 808 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQA 888 + K + + T+D + + +L ++ + GGGGGGRP MAQ+GG K +A Sbjct: 809 ANAGKVIICAMATKDAVAK--GAHCGKLIKEISSMLGGGGGGRPDMAQAGGKMPEKIQEA 866 Query: 889 I 889 I Sbjct: 867 I 867 >gi|325954950|ref|YP_004238610.1| alanyl-tRNA synthetase [Weeksella virosa DSM 16922] gi|323437568|gb|ADX68032.1| alanyl-tRNA synthetase [Weeksella virosa DSM 16922] Length = 869 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 331/914 (36%), Positives = 506/914 (55%), Gaps = 73/914 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FFQ+ H ++ S+ ++ +DPTLMF NSGM FK F G P + QK Sbjct: 6 IRKEFLNFFQQRNHLIVDSAPIVLKDDPTLMFNNSGMAQFKEYFLGNATPKSNRIADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDLD+VG+ HHT FEMLGN+SFG YFK+ AI AW+LLT + + + ++Y Sbjct: 66 CLRVSGKHNDLDDVGKDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTGTYGIGKDQIY 125 Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +TV++ DE EA LWK+ ++ D+I+ DNFW M + GPCGPCSEI D Sbjct: 126 VTVFEGDEKDGTQLDQEALDLWKE--HIAEDRILLGNKKDNFWEMGDVGPCGPCSEIHVD 183 Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + G +++ + IEIWNLVFMQ++++ LP IDTGMG ER+A Sbjct: 184 IRPEEERLAVDGKSLVNQDHPQVIEIWNLVFMQYQRRADGSLEPLPAKHIDTGMGFERLA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292 VLQ KT+NYD D+F+ LI+ E+++G+ Y N I + RV+VDHLR+ SF IADG LP Sbjct: 244 MVLQGKTSNYDTDVFRPLIKKLEKISGITYGDNEITDIAIRVVVDHLRAVSFAIADGQLP 303 Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 +N G GYV+RRI+RRA+ Y R L EP + L P L EMG +PELI+ + ++ + Sbjct: 304 SNTGAGYVIRRILRRAISYGYRFLNLKEPFIYLLFPILKDEMGDFFPELIKQESIVTGVI 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 R E+ F +T++ GL L+ ++ +++ G V F+LYDT+G P D+ + ++ Sbjct: 364 REEESSFLRTIEHGLNRLNQIIDQYQDTKVVPGHVVFELYDTYGFPADLSRIVVEDHNFT 423 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F + +Q++R++ + W ++E +F+GYD+L + Sbjct: 424 -IDEDGFEVEMSKQKARSKK-----ATALETDDWVIVREN-ANEEFVGYDILSTEVQITR 476 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 RKV +K G+ ++V D+TPFYAE+GGQ+GDT Sbjct: 477 YRKVKNKK----------------------------GEFYQLVLDKTPFYAESGGQIGDT 508 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G I ++++ + KK + +H VE+ E + +D R + NHSATH Sbjct: 509 GLLISANEQIEVLNT-KKENNLIIH--FVEQLPSNIEATFQAEVDSITRNETQKNHSATH 565 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV-V 650 LLH AL T+LG+HV Q GS + PD LRFD +H +T+ E+ +E VND I ++P+ Sbjct: 566 LLHEALRTVLGTHVEQKGSYVGPDYLRFDFSHFGKMTTEEIAEVEKIVNDRIVASIPLDE 625 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 R + ++A++ GA AL G KY D VR++ S LCGGTHV +T +I L I Sbjct: 626 KRNIPFDEAVSQGAMALFGEKYGDYVRLIKFG------SSVELCGGTHVKNTSDIRLFKI 679 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SESS AGIRRIEAIT A L ++ +S+ LK ++ + V+++ +E +L Sbjct: 680 TSESSTAAGIRRIEAITSNAAIDVLKEAEKNYQSVLDTLK-TKSDAKKAVQQLLDENAQL 738 Query: 771 -----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + + + K + I + F++ I ++++++ K L ++ + + Sbjct: 739 KKQVEKFVAQQAKAEKENWKQQVKNINGIQFLA-IKTDLNTQSAKQNAIDLTNELDNAFV 797 Query: 826 MLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +V K S+ I + ++L++ + NA + R AK + G GGG+ +A +GG + Sbjct: 798 -VVATKDAVKPSITISIAKNLVEEKQLNAGQIVREIAKNI-QGSGGGQAFLATAGGKDVT 855 Query: 884 KADQAIAGVASFLK 897 D+A+A +F++ Sbjct: 856 GIDKALAQAETFVQ 869 >gi|239932415|ref|ZP_04689368.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672] gi|291440781|ref|ZP_06580171.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672] gi|291343676|gb|EFE70632.1| alanyl-tRNA synthetase [Streptomyces ghanaensis ATCC 14672] Length = 889 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 352/922 (38%), Positives = 512/922 (55%), Gaps = 79/922 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + T+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT D Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSAQDKGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL+ITVY +D+EA ++W ++ G+ ++I R+ DNFW M GPCGPCSEI +D+ Sbjct: 119 LDPERLWITVYQDDDEAEQIWHEVVGVPKERIQRLGKKDNFWDMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMA 234 G G G + ERY+EIWNLVFMQ+E+ + LP +IDTG+GLER+A Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGPGKDYPILGDLPSKNIDTGLGLERLA 237 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292 +LQ N Y+ID +I + ++TG++Y V+ RV+ DH+R+S LI DG+ P Sbjct: 238 MILQGVQNMYEIDTSMAVIDKATELTGVRYGDAQASDVSLRVVTDHMRTSVMLIGDGVTP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPELI + IE+ Sbjct: 298 GNEGRGYVLRRIMRRAIRNMRLLGATGPVVKDLIDVVIGMMGQQYPELITDRERIEKVAL 357 Query: 353 SEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ F KTL G +LD +S +L GD AF L+DT G P+D+ ++ +GL Sbjct: 358 AEENAFLKTLKAGTNILDTAVSDTKAAGSTVLPGDKAFLLHDTWGFPIDLTLEMAAEQGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D F + ++EQR RA+A + +G + + + ++ GAT FIGY Sbjct: 418 S-VDEEGFRRLMKEQRERAKADARAKKTGHADLGAYREIADRAGATDFIGY--------- 467 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T G S++V I+ G A G +VE+V D+TPFYAE GGQ+G Sbjct: 468 -------------THTEGESTVV-GILVDGVPSAAATEGDEVEIVLDRTPFYAEGGGQIG 513 Query: 530 DTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG D G +++ D QK G++VH +V+ G + + +ID + R ++ HS Sbjct: 514 DTGRIRTDSGAVIEVRDCQKPVPGVYVHKGVVQVGEVTVDAKAHASIDARRRTAIARAHS 573 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL H AL LG +Q GS P RFD + + +E +N+++A++L Sbjct: 574 ATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPQTVMLDVEQKINEVLARDLD 633 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V +M ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L+ Sbjct: 634 VRADVMGIDEARKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGLV 688 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767 ++ ESSI +G+RRIEA+ G A L + + L LK GR EE+ E+ Sbjct: 689 KLLGESSIGSGVRRIEALVGVDAYHFLAREHTVVNQLTELLK-------GRSEELPEKVS 741 Query: 768 ----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVM 813 ++++ A++ LQ K DV ++ + +V + +L+ ++ Sbjct: 742 AMLGRLKDAEKEIEKFRAEKVLQAAAGLAESAK--DVRGVAVVTGQVPDGTTADDLRKLV 799 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGG 870 ++ +IQ G +V + L V+ + R A DL R +AK L GGGGGG Sbjct: 800 LDVRGRIQGGRAAVVALFTTVNGKPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGGG 858 Query: 871 RPHMAQSGGPNGNKADQAIAGV 892 +P +AQ GG N +A+ V Sbjct: 859 KPDVAQGGGQNPAAIGEAVDAV 880 >gi|239978415|ref|ZP_04700939.1| alanyl-tRNA synthetase [Streptomyces albus J1074] gi|291450311|ref|ZP_06589701.1| alanyl-tRNA synthetase [Streptomyces albus J1074] gi|291353260|gb|EFE80162.1| alanyl-tRNA synthetase [Streptomyces albus J1074] Length = 890 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 348/924 (37%), Positives = 515/924 (55%), Gaps = 82/924 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ P T+V Sbjct: 4 AEIRRRWLRFFEERGHAVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEATPPAPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT + Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTTSQEQGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL+ITVY +D+EA +W++ G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LDPERLWITVYLDDDEAETIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ ++K+ IL P +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEDKENFPILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ+ N Y+ID + +I + ++TG++Y + V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQDVRNLYEIDTSRIVIDKATELTGVQYGADQASDVSLRVVTDHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPELI + I Sbjct: 298 PGNEGRGYVLRRIMRRAVRNMRLLGATGPVVAELVDTVIESMGQQYPELITERKRILTVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F K L G +LD ++ +L+GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKALKGGTNILDTAVTETKAAGSTVLSGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A + +G + + + + GAT F GY Sbjct: 418 LS-VDEPGFRRLMKEQRERAKADARAKKTGHADLSAYREVADAAGATDFTGYLA------ 470 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T G S++V +V G A G +VE+V D+TPFYAE GGQ+ Sbjct: 471 ----------------TEGESTVVGLLVD-GVSSPAATEGDEVEIVLDRTPFYAEGGGQI 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 DTG +G +++ DVQK G+ VH +V+ G + ID RR ++ H Sbjct: 514 ADTGRIRFDNGAVVEVRDVQKPVPGVHVHKGVVQVGEVTVGSPAYAAIDVGRRRAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + A L +E +N+++A++L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPGAVLTDVEQKINEVLARDL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ +DA GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEKV 741 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKI-----------ADVNFMSHIISEVD----SKELKSV 812 ++ ++ + +E K+ DV + + V + +L+ + Sbjct: 742 SA--MLGKLKEAEKEIERFRAEKVLQAAAGLAAGAQDVRGTALVTGRVPDGTGADDLRKL 799 Query: 813 MDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 + ++ +I + ++ L ++ ++ +V + E +R A DL R +AK L GGGG Sbjct: 800 VLDVRGRIPADRPAVVALFTVANDRPLTV-VATNEAARERGLKAGDLVRTAAKTL-GGGG 857 Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892 GG+P +AQ GG N D+A++ V Sbjct: 858 GGKPDVAQGGGQNPQAIDEAVSAV 881 >gi|315022567|gb|EFT35594.1| alanyl-tRNA synthetase [Riemerella anatipestifer RA-YM] gi|325335524|gb|ADZ11798.1| Alanyl-tRNA synthetase [Riemerella anatipestifer RA-GD] Length = 867 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 337/906 (37%), Positives = 516/906 (56%), Gaps = 89/906 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ H ++PS+ ++ +DPTLMF+NSGM FK+ F G + P + QK Sbjct: 6 IRQAFLDFFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKTPKAPRIADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDLD+VGR HHT FEMLGN+SFG YFK AI AW+LLT+ + + + LY Sbjct: 66 CLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGNYFKREAIAFAWELLTEVYKIPKENLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T++ + D+EA+ WK S ++ D+I+ DNFW M E+GPCGPCSEI D Sbjct: 126 VTIFEGDATENLERDQEAYNCWK--SYIAEDRILNGNKKDNFWEMGESGPCGPCSEIHID 183 Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + E + G +++ + IE+WNLVFM+F ++ LP +DTGMG ER+ Sbjct: 184 LRSEEEKSKVSGKDLVNQDHPQVIEVWNLVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADGI 290 LQ KT+NYD D+F LI EQ++ KYEG + RV+VDH+R+ SF IADG Sbjct: 244 MALQGKTSNYDTDVFTPLIAKVEQLSHKKYEGLLDNEKDIAIRVVVDHIRAVSFAIADGQ 303 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+N G GYV+RRI+RRA+ Y+ R L E + L+ L +MG+ +PE+ + + L+ E Sbjct: 304 LPSNTGAGYVIRRILRRAISYSYRFLDMKEAFLYELVAVLKNQMGAFFPEIEKQEKLVTE 363 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407 ++ E+ F KT++ GLV L+ ++ K ++ L G F+LYDT+G P D+ + I Sbjct: 364 VIKEEENSFLKTIEHGLVRLENIIQETLKKGEKTLPGAEVFELYDTYGFPADLSRIIAEE 423 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLRG 465 +GL +D F++ +E+Q+ R++ S +K+ W +LK++ F+GYD L Sbjct: 424 KGLT-VDEKGFDEEMEKQKQRSKKSS-------AQKVYDWVTLKDE--TESFVGYDQLEH 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 F+ + RK+ E G +VVF+QTPFYAE G Sbjct: 474 KVFITKYRKL----------------------------ENKDGVFYQVVFNQTPFYAEGG 505 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + + ++ D +K+ ++ ++++ E +D + RR Sbjct: 506 GQVGDKGYIESEEGQFEVLDTKKENN---LNISLIKDLPQAPEKEFTAVVDSRLRRNTQA 562 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH AL +LG+HV Q GS + D LRFD +H ++ E+ +E+ VN I + Sbjct: 563 NHSATHLLHEALREVLGTHVEQKGSFVGADYLRFDFSHFSKMSDEEIALVEEKVNAKIKE 622 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N+ + R + ++A+ GA AL G KY D VR++ S LCGGTH ST E Sbjct: 623 NISLQEYRNIPIQEALDKGAMALFGEKYGDNVRMIQFG------SSKELCGGTHAKSTSE 676 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L IVSESS AGIRRIEAI+ ++A ++ +E++ L+ LK +V VE++ Sbjct: 677 IGLFKIVSESSTAAGIRRIEAISSEKANAYFKELEEQMTQLSLALKTK--DVQKSVEKLL 734 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADV--NFMSH-------IISEVDSKELKSVMDA 815 EE +KL K +L+ ++L+ ++ AD F+S ++ +D+ +K ++ Sbjct: 735 EENQKL-----KSELEAIKKELAKNETADWKNQFVSKEGKNLLVKMTSLDAASVKDIVFQ 789 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 L+K++ + +I+++ + + K + + V++DL D +NA + + AK + GGGGG P A Sbjct: 790 LKKEVPTSVIVILSDAND-KPMISVGVSDDLGDSYNAGVIVKELAKEIQGGGGGN-PGFA 847 Query: 876 QSGGPN 881 +GG N Sbjct: 848 TAGGKN 853 >gi|160933050|ref|ZP_02080439.1| hypothetical protein CLOLEP_01892 [Clostridium leptum DSM 753] gi|156868124|gb|EDO61496.1| hypothetical protein CLOLEP_01892 [Clostridium leptum DSM 753] Length = 877 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 334/912 (36%), Positives = 509/912 (55%), Gaps = 57/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R +L+FF+ GH LPS SL+P D +L+ NSGM P K FTG+ P V Sbjct: 4 TGLNELREKYLQFFESKGHLRLPSFSLVPNGDKSLLLINSGMAPMKKYFTGEVTPPRNRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D++ VG T RH T+FEMLGNFSFG YFK A AW+ TK +L Sbjct: 64 TTCQKCIRT----PDIERVGITARHGTYFEMLGNFSFGDYFKHEATAWAWEFCTKVLELP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R+++++Y +D+EAF +W K G+ +I+R+ DNFW TGPCGPCSE++FD+GE Sbjct: 120 VERIWVSIYQDDDEAFDIWTKEVGVDPSRIVRLGKEDNFWEHG-TGPCGPCSELYFDRGE 178 Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P G + +RY+E WNLVF QF+ + L +IDTGMGLER+A ++Q Sbjct: 179 EYGCGSPTCGVGCDCDRYVEFWNLVFSQFDNDGQGNYTPLEHKNIDTGMGLERLACIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N + +D +++++ ++ G++Y + ++ RV+ DH+RS++F+I DG++P+NEGR Sbjct: 239 VDNLFLVDTVQNIMKHISKIAGVEYGADPKTDISLRVVTDHIRSTTFMIGDGVMPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLG P + + + E SAYPEL++ + I++ + E+E Sbjct: 299 GYVLRRLLRRAARHGRLLGIRRPFLAEVCDTVINENQSAYPELVEKRDFIKKLISVEEEN 358 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F +T+D+GL +L G L + +IL+G AF+L DT+G PLD+ ++I+ +G+ +D Sbjct: 359 FDRTIDQGLQIL-GALIENSEKKILSGAEAFRLNDTYGFPLDLTKEIIAEKGMT-VDESE 416 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLK---EKYGATQFIGYDLLRGSKFMKEDRK 474 F + L EQR+RAR G+ W S + AT+F GY L K+ + Sbjct: 417 FQRLLSEQRTRARNARKNAGADA----WLSESVDLDGIPATEFTGYATL------KDTAR 466 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 +L AI++ GE VE A V VV D+TPFYAE+GGQ+GDTG Sbjct: 467 IL-----------------AILRDGERVESAEMNDDVVVVLDRTPFYAESGGQVGDTGFL 509 Query: 535 IGDGIRLQITDVQKKAEGIFVHHA--IVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 R + D K G+F+HH +VE + +E+ V +D R + NH+A HL Sbjct: 510 TDGAGRFAVLDTTKHHSGVFLHHCHVVVEGLSVGSEVECV--VDGIRRYNIMRNHTAAHL 567 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG+HV Q G + +RFD TH +T E +E+ VND I + V + Sbjct: 568 LQAALRKVLGTHVEQAGQLVDGQRVRFDFTHFSALTKEETARVEEIVNDEILSAVQVTST 627 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E+A GA AL G KY D VRVV G S+ CGGTHV++T + L I+S Sbjct: 628 EMPIEEAKKLGAMALFGEKYGDIVRVVQA-----GEFSTEFCGGTHVNNTARLGLFKIIS 682 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKL- 770 ESS+ +G+RRIE +TG+ H+ + ++ +S LK++ + E + E ++L Sbjct: 683 ESSVASGVRRIEGVTGRGVLQHMAEDAKTIQDASSALKLNNPAELPEACEHLLSEQKELR 742 Query: 771 -QLIHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +L A +L V+ L S + V ++ S + L+++ D +++ + + + Sbjct: 743 RELEKANARLANWQVDGLFDSAEMVKGVKIITGSFSSTTADALRTMSDRVRENAPNSVAV 802 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 I+ K E +A ++ R +AKV GG GGG+P A +G + K D Sbjct: 803 FAAINDGKAVLSATAGKEAQQKGCHAGNIVRAAAKV-AGGNGGGKPDFAMAGAKDLTKID 861 Query: 887 QAIAGVASFLKK 898 +A+A V + + + Sbjct: 862 EALAAVNTIVSE 873 >gi|291544162|emb|CBL17271.1| alanyl-tRNA synthetase [Ruminococcus sp. 18P13] Length = 883 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 336/912 (36%), Positives = 506/912 (55%), Gaps = 62/912 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R FL FF+ GH + S+SLIP D +L+ NSGM P K F GQ P VTT Sbjct: 6 LNELREKFLSFFESKGHTRMDSASLIPQGDNSLLLINSGMAPLKKYFLGQATPPNVRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D++ VG+T RH T+FEMLGNFSFG YFK AI+ AW+ TK +L Sbjct: 66 CQKCIRT----PDIERVGKTARHGTYFEMLGNFSFGDYFKTEAIEWAWEFFTKVLELPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY++VY++D+EA+ +W K G++ D + R+ DNFW +GPCGPCSEI+FD+G Sbjct: 122 KLYVSVYEQDDEAYDIWIKHIGVAPDHMTRLGKEDNFWEHG-SGPCGPCSEIYFDRGPEK 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P E +R++E+WNLVF QF K + +IDTGMGLER+A V+Q Sbjct: 181 GCGSPDCKVGCECDRFVEVWNLVFSQFNSDGKGHYAEMEHKNIDTGMGLERLACVMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D ++++Q ++ G+ Y+ + V+ RVI DH+RS++F++ DG+ PANEGRGY Sbjct: 241 NLFEVDTVQNIMQHICRIAGITYKEDPKKDVSLRVITDHVRSTTFMVGDGVTPANEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VL+R++RRA + ++LG EP + + + E +AYPEL + K LI + +R E+E F Sbjct: 301 VLKRLLRRAARHGKMLGIQEPFLYQVAETVIHENENAYPELAEKKDLICKIIRHEEESFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+G LL+ L + D + L+G AFKL DT+G PLD+ +I RG+ +D Sbjct: 361 KTIDKGTELLNMFLDRVSSDSLSMLSGADAFKLSDTYGFPLDLTMEIAAERGIK-VDEDK 419 Query: 418 FNQALEEQRSRARAH--SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR-GSKFMKEDRK 474 F + +E+Q+S ARA S S + E I K T+F+GY + G+K + Sbjct: 420 FRELMEQQKSMARADRASKVKTSWSNESIADISAPK---TEFVGYTQMSCGAKIL----- 471 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 I G+ V+ G ++ D+TPFYAE+GGQ+ DTG Sbjct: 472 -------------------GIFADGKQVDSIREGDVAALILDRTPFYAESGGQVADTGEI 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +G+G + DV+K G F+H +E GIL+ + ID R + NH+A HLL Sbjct: 513 VGNGA-FAVADVKKLESGHFMHMGSLEDGILKVGDEVSAQIDADRRMSIMRNHTAAHLLQ 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q G + + RFD +H +TS EL+++ED VN I + LP+ + M Sbjct: 572 AALRQVLGDHVHQAGQLVNAEHCRFDFSHFNAMTSEELQAVEDLVNRKIFEALPITMQEM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E+A GA AL G KY + VRVVS+E S+ CGGTH+ +T + L I+SES Sbjct: 632 PIEEARKLGAMALFGEKYGNIVRVVSMEG-----FSTEFCGGTHLDNTSRVGLFKILSES 686 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLI 773 S+ AG+RRIEA+TG ++L AS LK+ +V R + E ++ + Sbjct: 687 SVAAGVRRIEAVTGTGVLKSYQEMQQRLHFAASALKLGNPLELVERCTAMIAELKEKE-- 744 Query: 774 HAKRKLQLNVEDL-------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII- 825 H L + + D + +I+ V +S + + L+ + D ++ ++ I+ Sbjct: 745 HQIDALNMKIADSQISGLFENAKEISGVRVISAFFNGTGADMLRQMGDQVKDRLDGNIVA 804 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLA-RLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + G++ EK + E + +A + R+SA + GG GGGRP A +G Sbjct: 805 VFAGMNGEKGTFYCVCGKEAVKKGAHAGKIVQRVSA--ITGGKGGGRPDSAMAGIGKQYM 862 Query: 885 ADQAIAGVASFL 896 D+A+A + + + Sbjct: 863 VDEALAALDAIV 874 >gi|254415207|ref|ZP_05028969.1| alanyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420] gi|196178013|gb|EDX73015.1| alanyl-tRNA synthetase [Microcoleus chthonoplastes PCC 7420] Length = 877 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 347/902 (38%), Positives = 512/902 (56%), Gaps = 64/902 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+F+ K H++LPS+SL+P +DPT++ T +GM+PFK IF GQ + + TT Sbjct: 11 NQIRQKFLDFYDKRQHQVLPSASLVP-DDPTVLLTIAGMLPFKPIFLGQRQSDFSRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI AW+L T F+L R Sbjct: 70 QKCLRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTNVFELPPER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ ED+EAF +W+ G+ A +I R+ DNFW+ TGPCGPCSEI++D Sbjct: 126 LIVSVFREDDEAFAIWRDKIGIPAHRIQRMGEEDNFWASGPTGPCGPCSEIYYD-FHPEK 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + L +IDTG+GLERMA +LQ+ NNY Sbjct: 185 GDKDIDLEDDTRFIEYYNLVFMQYNRDADGNLTPLQNKNIDTGLGLERMAQILQQVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + ++ + Y ++ V+ +VI DH+R+ LIADGI +N GRGY+L Sbjct: 245 ETDLIFPIIKTAAEIAELDYAKSDEKTKVSLKVIGDHIRAVVHLIADGITASNIGRGYIL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + YP + + I+ L+ E+ +F KT Sbjct: 305 RRLIRRVVRHGRLIGIQGEFTTQVADTAIALAEDTYPNVRERNDAIQAELQREESQFRKT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG LL +L+ K E ++G AF LYDTHG PL++ Q+I GL +DI + A Sbjct: 365 LARGEKLLADILAQ--KPEQISGRDAFTLYDTHGFPLELTQEIAEEHGLT-VDIAGYEAA 421 Query: 422 LEEQRSRARAHSLG---LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++EQ+ ++A L G+ +++ + AT+F+GY + Sbjct: 422 MKEQQENSQAAHETVDLLAQGSLDEVTSGV----AATEFLGYTV---------------- 461 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ V A+V +GE VE A +G +V+VV DQTPFYAE+GGQ+GD G GD Sbjct: 462 -------PATTAQVMALVAEGESVESAQTGTEVQVVLDQTPFYAESGGQIGDRGYLSGDN 514 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++I DV+K+++ FVH VERG L ++ ID RR+ NH+ATHLL AL Sbjct: 515 LVVRIDDVKKESD-FFVHFGRVERGTLNLGDTVTAQIDRACRRRAQANHTATHLLQAALK 573 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 I+ +SQ GS + D LRFD S+ +TS EL IED +N IA+ IM D Sbjct: 574 KIVDPSISQAGSLVAFDRLRFDFNCSRSLTSEELTQIEDQINTWIAEAHGADVAIMPLTD 633 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GA A+ G KY D VRV+ GV S LCGGTHV++T EI + IV+E+ + + Sbjct: 634 AKAKGAIAMFGEKYADEVRVIDFP----GV-SMELCGGTHVNNTAEIGVFKIVAETGVAS 688 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAK 776 GIRRIEA+ G +L +D+ +K L+ KV + R+ + E + Q L K Sbjct: 689 GIRRIEAVAGPAVLDYLNLRDKVVKELSDRFKVKPEEIPDRITNLQNELKASQKELEAVK 748 Query: 777 RKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 ++L L D + + + + +++ LK+ + LQ+K+ ++L + E Sbjct: 749 QELALAKSDQVLSQAESVGEFKVLVANLGDIEPDALKTAAERLQQKLGDSAVVLGSVPTE 808 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGG------GGGGGRPHMAQSGGPNGNKADQ 887 K S++ + + D + K +GG GGGGGRP++AQ+GG + +K + Sbjct: 809 GKVSLVAAFSAKIYK-----DKQLQAGKFIGGIAKLCGGGGGGRPNLAQAGGRDASKLPE 863 Query: 888 AI 889 A+ Sbjct: 864 AL 865 >gi|294811565|ref|ZP_06770208.1| Alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] gi|326440050|ref|ZP_08214784.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] gi|294324164|gb|EFG05807.1| Alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] Length = 889 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 352/924 (38%), Positives = 523/924 (56%), Gaps = 82/924 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ KP + T+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLINAGMVPFKPYFLGETKPPFPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+L+W+LLT + Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLSWELLTTPVEDGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ +L+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LEPEKLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ + K++ IL P +IDTG+GLER+ Sbjct: 179 GPAF-GAEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ D + ++ + ++TG++Y ++ V+ RVI DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVRYGADHASDVSLRVIADHIRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVAALVDVVVRTMGEQYPELVTDRTRIEAVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ RF KTL+ G +L+G ++ +L GD AF L+DT G P+D+ +I +G Sbjct: 358 LAEEARFLKTLNAGTNVLEGAITEAKATGGTVLAGDKAFLLHDTWGFPIDLTLEIAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR++A+A + +G + + + + GAT+F GY Sbjct: 418 LS-VDEDGFRRLMKEQRAKAKADAKAKKTGHADLSAYREVADGSGATEFTGY-------- 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T G S+IV +V G A G +VEVV D+TPFYAE GGQL Sbjct: 469 --------------AATEGESTIVGLLV-DGVPSPAATEGDEVEVVLDRTPFYAEGGGQL 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + G +++ DVQ+ G+ VH V+ G + S ID + RR ++ H Sbjct: 514 ADQGRIKLDSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS +P RFD + + L +E +N+++++ L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGAPSAVPGSVLTDVEQRINEVLSREL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVQAEVMSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + L +K GR EE+ E Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPE-- 739 Query: 768 RKLQLIHAKRK-LQLNVEDLSCHKI-----------ADVNFMSHIISEVD----SKELKS 811 K+ + AK K + +E K+ D++ ++ + V+ + +L+ Sbjct: 740 -KISGMLAKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIHGVALVSGRVEDGTSADDLRR 798 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGG 868 ++ ++ +I +V + L V+ + R A DL R +AK L GGGG Sbjct: 799 LVLDVRGRIPGDRPAVVALFTVANGRPLTVIATNEAGRERGLKAGDLVRTAAKTL-GGGG 857 Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892 GG+P +AQ GG N +AIA V Sbjct: 858 GGKPDVAQGGGQNPEAVGEAIAAV 881 >gi|163814106|ref|ZP_02205498.1| hypothetical protein COPEUT_00259 [Coprococcus eutactus ATCC 27759] gi|158450555|gb|EDP27550.1| hypothetical protein COPEUT_00259 [Coprococcus eutactus ATCC 27759] Length = 887 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 347/901 (38%), Positives = 511/901 (56%), Gaps = 44/901 (4%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEF + GH + S SLIP ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEFMESKGHLRMKSFSLIPHNDNSLLLINSGMAPLKPYFTGQEVPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD+ Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKHEAISWTWEFLTEVVGLDKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF +W K G+SAD+I R DNFW GPCGPCSE+++D+GE Sbjct: 122 RLYPSVYQDDDEAFDIWNKEIGVSADRIFRFGKEDNFWEHG-AGPCGPCSEVYYDRGEKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + + +RY+E+WN VF QF L + +IDTGMGLER+A V+Q+ Sbjct: 181 GCGKPGCTVGCDCDRYMEVWNNVFTQFNNDGHNNYTELEQKNIDTGMGLERLAVVVQDVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D K L ++ G++YE ++ V+ R+I DH+RS +F+ +DGI+P+NEGRGY Sbjct: 241 SIFDVDTIKALRDKVCEMAGVEYETDHEKDVSIRLITDHIRSVTFMTSDGIVPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + L + AYPEL + K I + E+E F Sbjct: 301 VLRRLLRRAARHGRLLGIKGKFLSELAKTVIEVSEDAYPELCEKKEYIFNKIDKEEESFN 360 Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D GL +L + + +++L+GD AFKLYDT+G PLD+ ++I+ G+ +D Sbjct: 361 KTIDTGLAILKDYIEETKAAGEKVLSGDKAFKLYDTYGFPLDLTKEIIEEEGIE-VDEAR 419 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYD-LLRGSKFMKEDRKV 475 F + + Q+ AR A G ++ L ++F+GYD L SK Sbjct: 420 FTECMNIQKETARNARQTTTYMGADATVYEQLPVDM-TSEFVGYDKLTYKSK-------- 470 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 +T + + + ++ + + G + ++ +TPFYA GGQ+GD G Sbjct: 471 --------ITAITTELGEGKDKKSVLADTVSEGAQATIIVPETPFYATMGGQIGDKGIIK 522 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + D K G H VE G L LT+D +NR + NHSATHLL Sbjct: 523 TKNGTFVVEDTVKVVGGKIAHIGYVESGELNVGDEAELTVDAENRALICNNHSATHLLQK 582 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL +LG HV Q GS + P LRFD +H + +T E+K +ED VN+ I ++PV T IM Sbjct: 583 ALKMVLGDHVEQAGSLVEPGRLRFDFSHDQAMTKEEIKKVEDIVNEQIQLDVPVCTDIMT 642 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A +GA AL G KY ++VRVVS+ G S CGGTHV++TG I + IVSE+ Sbjct: 643 VDEAKKTGAMALFGEKYGEKVRVVSI-----GDFSKEFCGGTHVANTGVIGMFKIVSETG 697 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 + AG RRIEA+T A + + +L A K V R+E++ E ++L + Sbjct: 698 VAAGTRRIEALTSIGALEYYRSMESELVEAAKAAKTDIHGVAARIEQLLAEVKELTNENK 757 Query: 776 KRKLQLNVE---DLSCHKIAD--VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K K ++ E D+ + I + ++ I + D L+++ D + K+ I++L Sbjct: 758 KLKDKMAKEAAGDVLSNAIDKDGIKILTAAIPDTDMNSLRNLGDDFKSKLGDSIVVLAS- 816 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +K+ K +++ + T+ + + +A ++ + A ++ GGGGGGRP+MAQ+GG + N D A+ Sbjct: 817 AKDGKVNLIAMATDGAVAKGAHAGNIIKAVAGLV-GGGGGGRPNMAQAGGKDPNGIDAAL 875 Query: 890 A 890 A Sbjct: 876 A 876 >gi|313207039|ref|YP_004046216.1| alanyl-tRNA synthetase [Riemerella anatipestifer DSM 15868] gi|312446355|gb|ADQ82710.1| alanyl-tRNA synthetase [Riemerella anatipestifer DSM 15868] Length = 867 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 336/906 (37%), Positives = 516/906 (56%), Gaps = 89/906 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ H ++PS+ ++ +DPTLMF+NSGM FK+ F G + P + QK Sbjct: 6 IRQAFLDFFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKTPKAPRIADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDLD+VGR HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + + LY Sbjct: 66 CLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGNYFKKEAIVFAWELLTEVYKIPKENLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T++ + D+EA+ WK S ++ D+I+ DNFW M E+GPCGPCSEI D Sbjct: 126 VTIFEGDATENLERDQEAYNCWK--SYIAEDRILNGNKKDNFWEMGESGPCGPCSEIHID 183 Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + E + G +++ + +E+WNLVFM+F ++ LP +DTGMG ER+ Sbjct: 184 LRSEEEKSKVSGKDLVNQDHPQVVEVWNLVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADGI 290 LQ KT+NYD D+F LI EQ++ KYEG + RV+VDH+R+ SF IADG Sbjct: 244 MALQGKTSNYDTDVFTPLIAKVEQLSQKKYEGLLDNEKDIAIRVVVDHIRAVSFAIADGQ 303 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+N G GYV+RRI+RRA+ Y+ R L E + L+ L +MG+ +PE+ + + L+ E Sbjct: 304 LPSNTGAGYVIRRILRRAISYSYRFLDMKEVFLYELVAVLKNQMGAFFPEIEKQEKLVTE 363 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407 ++ E+ F KT++ GLV L+ ++ K ++ L G F+LYDT+G P D+ + I Sbjct: 364 VIKEEENSFLKTIEHGLVRLENIIQETLKKGEKTLPGAEVFELYDTYGFPADLSRIIAEE 423 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLRG 465 +GL +D F++ +E+Q+ R++ S +K+ W +LK++ F+GYD L Sbjct: 424 KGLT-VDEKGFDEEMEKQKQRSKKSS-------AQKVYDWVTLKDE--TESFVGYDQLEH 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 F+ RK+ E G +VVF+QTPFYAE G Sbjct: 474 KVFITRYRKL----------------------------ENKDGVFYQVVFNQTPFYAEGG 505 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + + ++ D +K+ ++ ++++ E +D + RR Sbjct: 506 GQVGDKGYIESEEGQFEVLDTKKENN---LNISLIKDLPQAPEKEFTAVVDSRLRRNTQA 562 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH AL +LG+HV Q GS + D LRFD +H ++ E+ +E+ VN I + Sbjct: 563 NHSATHLLHEALREVLGTHVEQKGSFVGADYLRFDFSHFSKMSDEEIALVEEKVNAKIKE 622 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N+ + R + ++A+ GA AL G KY D VR++ S LCGGTH ST E Sbjct: 623 NISLQEYRNIPIQEALDKGAMALFGEKYGDNVRMIQFG------SSKELCGGTHAKSTSE 676 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L IVSESS AGIRRIEAI+ ++A ++ +E++ L+ LK +V VE++ Sbjct: 677 IGLFKIVSESSTAAGIRRIEAISSEKANAYFKELEEQMTQLSLALKTK--DVQKSVEKLL 734 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADV--NFMSH-------IISEVDSKELKSVMDA 815 EE +KL K +L+ ++L+ ++ AD F+S ++ +D+ +K ++ Sbjct: 735 EENQKL-----KSELEAIKKELAKNETADWKNQFVSKEGKNLLVKMTSLDAASVKDIVFQ 789 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 L+K++ + +I+++ + + K + + V++DL D +NA + + AK + GGGGG P A Sbjct: 790 LKKEVPTSVIVILSDAND-KPMISVGVSDDLGDSYNAGVIVKELAKEIQGGGGGN-PGFA 847 Query: 876 QSGGPN 881 +GG N Sbjct: 848 TAGGKN 853 >gi|290961838|ref|YP_003493020.1| alanine tRNA synthetase [Streptomyces scabiei 87.22] gi|260651364|emb|CBG74486.1| alanine tRNA synthetase [Streptomyces scabiei 87.22] Length = 890 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 343/918 (37%), Positives = 515/918 (56%), Gaps = 70/918 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ KP + T+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVNAGMVPFKPYFLGEVKPSFDRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+LLT D Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQHAWELLTSPQDKGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ +L+ITVY +D+EA ++W + G+ ++I R+ DN+WSM GPCGPCSEI +D+ Sbjct: 119 LEPEKLWITVYKDDDEAERIWHEQIGVPKERIQRLGKKDNYWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E + +E F LP +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGTSKEDFEILGELPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ID +I + ++TG++Y + V+ RV+ DH+R++ LI DG+ Sbjct: 238 AMILQGVQNLYEIDTSMAVIDKATEITGVRYGDAHASDVSLRVVTDHIRTAVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + IE Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLIDVVIGMMGQQYPELVTDRKRIETVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F K L G +LD ++ + ++L+GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKALKGGTNILDTAVTETKQAGGQVLSGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A + +G + + + + G T+FIGY Sbjct: 418 LS-VDEDGFRRLMKEQRDRAKADARAKKTGHADLGAYREIADAAGETEFIGYSD------ 470 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T G S++V I+ G A G +VE+V D+TPFYAE GGQ+ Sbjct: 471 ----------------TEGESTVV-GILVDGLSSPAATEGDEVEIVLDRTPFYAEGGGQI 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG + G ++I D QK G++VH +V+ G + +ID + R ++ H Sbjct: 514 GDTGRIRVDSGAVIEIRDCQKPVPGVYVHKGVVQVGEVTVGAKAQASIDGRRRTAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + +A + +E +N++++++L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPSAVPTAVMTDVEQKINEVLSRDL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V I++ ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVHAEILSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTSQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV------- 760 + ++ ESSI +G+RRIEA+ G A + L + + L +K + +V Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAREHTVVAQLQELIKGRPEELPEKVSAMLGKL 748 Query: 761 ---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 E+ E++R +++ A L + +D+S + + + +L+ ++ ++ Sbjct: 749 KDAEKEIEKFRAEKVLQAAAGLAESAKDVSGVAV----VTGQVPDGTTADDLRKLVLDVR 804 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPHM 874 +IQ G +V + L V+ + R A DL R +AK L GGGGGG+P + Sbjct: 805 GRIQGGRAAVVALFTAVNGKPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGGGKPDV 863 Query: 875 AQSGGPNGNKADQAIAGV 892 AQ GG N +A+ V Sbjct: 864 AQGGGQNPAAIGEAVDAV 881 >gi|256841698|ref|ZP_05547204.1| alanyl-tRNA synthetase [Parabacteroides sp. D13] gi|256736592|gb|EEU49920.1| alanyl-tRNA synthetase [Parabacteroides sp. D13] Length = 873 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 340/914 (37%), Positives = 505/914 (55%), Gaps = 70/914 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV+ D D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D+ G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + + +LNG AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI +FN+A+++Q+ RAR ++ + +G W +LKE G +F+GYDL Sbjct: 419 ILRENGMEA-DIEAFNKAMQKQKERAR-NAAAIETGD----WITLKE--GECKFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 C+ + + I Q+ +++ ++V DQTPFYAE Sbjct: 471 E------------CEAEILRY--------RQIKQKNKVL--------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D ++ + D K+ + VH +V + + I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINVKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V + I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------SSVELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGR 759 G I L+++ ESSI AG+RRIEA+T + A + Q + +L++L + + + Sbjct: 674 GMIGSLHVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMPNLAQAMKKS 733 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +EE E ++++ ++ ++L E ++ ++ + + + ++ +K+V ++ + Sbjct: 734 IEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKAE 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + GI + K ++++++++DL+ +A + + +AK + GGGGG+PH A +G Sbjct: 794 TTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHI-QGGGGGQPHFATAG 852 Query: 879 GPNGNKADQAIAGV 892 G N A+ V Sbjct: 853 GKNMEGLSIAVGAV 866 >gi|282856374|ref|ZP_06265653.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455] gi|282585745|gb|EFB91034.1| alanine--tRNA ligase [Pyramidobacter piscolens W5455] Length = 882 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 342/898 (38%), Positives = 505/898 (56%), Gaps = 56/898 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F+ F++ G S SL+P +DP+L+FT +GMVPFK + G E+P Y T QK Sbjct: 9 IRQLFVSFWESKGCHHYKSFSLVP-DDPSLLFTIAGMVPFKKYYLGLEEPEYARAVTSQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR ND++NVGRT RHHTFFEMLGNFS+GGYFK ++ W+ LT+ LD R+Y Sbjct: 68 CVRT----NDIENVGRTARHHTFFEMLGNFSWGGYFKRESLTWGWEFLTQVLGLDGSRMY 123 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE---CI 183 T+Y +D EAF +W K G+ ++ ++NFW M GPCGP SEI +DQG+ C Sbjct: 124 ATIYKDDREAFDIWTKEIGMPESHLVLNGEDENFWFMGPQGPCGPDSEILYDQGKEFSCG 183 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 P PG + +R++EIWN VF Q+++Q LP+ +IDTGMGLER+A+++Q N+ Sbjct: 184 PDCHPGC--DCDRFLEIWNHVFTQYDRQADGSFKPLPRKNIDTGMGLERLASLIQGVRND 241 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ DLF L++ + + G++Y N+ + +VI DH+R+ F+IADGILPAN+G+GYVL Sbjct: 242 FETDLFAPLMKKAGDIAGVRYGENDQSDLALKVISDHVRAVCFMIADGILPANDGQGYVL 301 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RRA Y RL+G P + ++PA+ MG Y EL + +L IE+ + E+ FGKT Sbjct: 302 RRLIRRAARYGRLIGIDRPFINDVIPAVIELMGDPYAELGENRLTIEKIVEIEENGFGKT 361 Query: 362 LDRGLVLLDG----VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 + +G LLD L GK L G VAF+LYDT G PL++ ++I CA +D Sbjct: 362 IRQGSELLDAEVKAALESAGK--TLGGAVAFQLYDTFGFPLELTREI-CAEHGVSVDEEG 418 Query: 418 FNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + QR RAR+ S + + + ++ +L ++GAT F+GY+ K Sbjct: 419 FKTEMARQRKRARSSSKQIANNVIKGNVFNALANEFGATDFVGYE------------KSE 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 C ++ ++A+V+ G V+ G++ V+ + +PFYAE GGQ+GDTG Sbjct: 467 C-----------NTKIRALVRDGRKVDALDEGEEGMVLLESSPFYAERGGQIGDTGLIKA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG+ + D + + V +G LR ++ ID ++ NH+ATH+LH Sbjct: 516 DGVLAVVKDSTHPFGELNMQTVTVTKGALRVGQGVLAQIDMDRHLAIARNHTATHILHAV 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV QNGS ++ LRFD TH + +L+ IE N I + PV T + + Sbjct: 576 LGKVLGGHVRQNGSLVSDRFLRFDYTHYEAPRREQLEEIETLTNAAILTDRPVTTVVTDL 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E A ASGA AL KY VRVVSV G SS LCGGTHV S+G I L IV E SI Sbjct: 636 EAAKASGAKALFEEKYGQTVRVVSV-----GDFSSELCGGTHVPSSGTIGSLKIVGEESI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +GIRRI A+TG L L++ L V + ++ +V+ + EE + L Q+ Sbjct: 691 GSGIRRITAVTGMTTVRLLQELSRTADELSTRLAVKRPLLIEKVKGMEEEIKALKRQIDE 750 Query: 775 AKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGI 830 R +L +++ L K ++ I VD ++ L+ D + + ++ Sbjct: 751 MSRAELAGSIDGLIAKKTLAGGAVNLYIGRVDGQDMDLLRESGDKFKDGDPKAVFVIFSK 810 Query: 831 SKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + E K +L ++ E+ + +A + + A ++ GG GGGRP+MAQ+GG K D+ Sbjct: 811 AAEDKVQILCMLGEEAQKKKLHAGRIVKELAALV-GGSGGGRPNMAQAGGREPGKIDE 867 >gi|325104121|ref|YP_004273775.1| alanyl-tRNA synthetase [Pedobacter saltans DSM 12145] gi|324972969|gb|ADY51953.1| alanyl-tRNA synthetase [Pedobacter saltans DSM 12145] Length = 880 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 332/920 (36%), Positives = 510/920 (55%), Gaps = 76/920 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF GH+++PS+ ++ NDPTLMFTN+GM FK++F G+ Y V Q+ Sbjct: 8 IRQAFLDFFASKGHQIVPSAPIVVKNDPTLMFTNAGMNQFKDLFLGEAPIKYPRVADTQR 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI +W+LLT LD+ RLY Sbjct: 68 CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTDVLKLDKDRLY 127 Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF- 177 +TV++ DE +A+ WK + +I++ DNFW M +TGPCGPCSEI F Sbjct: 128 VTVFEGDEKEGLPMDQDAYDFWKAF--VPESRILKGNKKDNFWEMGDTGPCGPCSEIHFD 185 Query: 178 ---DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 D+ G + + + IEIWN VFM+F + LP +DTGMG ER+ Sbjct: 186 NRSDEERAKVDGATLVNADDPQVIEIWNNVFMEFNRLKDGSLKKLPAQHVDTGMGFERLV 245 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFL 285 V+Q KT+NYD D+F +I + G+ Y V RV+ DH+R+ +F Sbjct: 246 RVIQGKTSNYDSDVFTPIIDFISKSAGIPYNAAATPDDKDWGQAVAMRVMADHIRAIAFA 305 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG LP+N GYV+RRI+RRA+ YA + LG+ EP + L+P L + + ELI + Sbjct: 306 IADGQLPSNNKAGYVIRRILRRAVRYAYQYLGFKEPFLNKLVPLLAAQFKGVFDELISQQ 365 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 +++ + E+ F +TL+ G+ + + +D ++G AF+LYDT+G P+D+ + + Sbjct: 366 DFVQKVILEEENSFLRTLENGINRFEKYIQD-NQDRQIDGAFAFELYDTYGFPIDLTELM 424 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 +GL +D+ F+ L++Q+ R+RA + + +G W ++ E +F+GYD + Sbjct: 425 AREKGLT-VDMAGFDTELQKQKERSRA-ATAIDAGD----WITVNED-DEVEFVGYDEVV 477 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + + RKV +A ++ ++V D TPFYAE+ Sbjct: 478 ATSRILKYRKV----------------------------KAKGKEQYQLVLDVTPFYAES 509 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD+G + + I D KK G+ +H A V L + + ++ RR Sbjct: 510 GGQVGDSGVLENENESIIINDT-KKENGLIIHFADVLPHNLNA--TFIAKVNVHTRRLTE 566 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL +LG HV+Q GS + D LRFD +H +T E+ IE VN + Sbjct: 567 NNHSATHLLHAALKAVLGDHVNQKGSLVNADVLRFDFSHFSKVTEQEIAKIEAIVNQKVR 626 Query: 645 QNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +N+P+ R + + A+ SG AL G KY D VRV++ ++D +S LCGGTHV +TG Sbjct: 627 ENIPLKEERNVPYQKALESGVTALFGEKYGDYVRVIT--FDDS--YSKELCGGTHVKATG 682 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I IVSES++ AG+RRIEAIT +A ++ Q + L L LK + ++ VE + Sbjct: 683 QIGYFKIVSESAVAAGVRRIEAITADKAEEYINNQAQLLAVLKELLK-NPKDLTKSVESL 741 Query: 764 WEEYRKLQLIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEVDSKELKSVMD-ALQ-KK 819 EE KL+ K L+ ++D+ K+ VN ++ I E+D +++ + A Q K Sbjct: 742 LEENNKLKKEIEKSVLEKASVLKDVLKSKVTVVNDVNLIAEEIDLSNAEAIKNLAYQLKD 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 I + +++G + + K ++ ++++++L+ +A + R AK + GGGGG+P A + Sbjct: 802 IVDNLFLVLGANIDGKPNLTVMISDNLVKEKGLDAGKIIRELAKEI-NGGGGGQPFYATA 860 Query: 878 GGPNGNKADQAIAGVASFLK 897 GG N A+ +LK Sbjct: 861 GGKNPEGLKSALEKAIIYLK 880 >gi|78778430|ref|YP_396542.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312] gi|123554842|sp|Q31DD9|SYA_PROM9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78711929|gb|ABB49106.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9312] Length = 886 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 333/917 (36%), Positives = 525/917 (57%), Gaps = 78/917 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+F+ + H+++PS+SLIP +DPT+M T +GM+PFK +F G +E+P +A T+ Q Sbjct: 15 IRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVG T RHHTFFEMLGNFSFG YFK AIQ AW+L+T + L + Sbjct: 73 KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSVENI 128 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++V+ EDEE+ K+W+ G+ D+I+++ DNFWS +TGPCGPCSE+++D Sbjct: 129 IVSVFHEDEESAKIWRDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHP--EK 186 Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 GL E+G+R+IE +NLVFMQ+ + + + L +IDTGMGLERMA +LQEK NNY Sbjct: 187 GLQNIDLEDGDRFIEFYNLVFMQYNRDSNGKLTDLKFKNIDTGMGLERMAQILQEKQNNY 246 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +IQ ++ + Y + N ++ ++I DH R+ LI+DG+ +N GRGY+L Sbjct: 247 ETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVAASNLGRGYIL 306 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG T + H+ M + YP+L LI ++ E+ RF +T Sbjct: 307 RRLIRRMVRHGRLLGITNEFLPHIATVGINLMQNNYPDLKNNNDLILNEIKIEEIRFRET 366 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LLD ++S K +++G AF+LYDT+G PL++ +I ++ +D+ F + Sbjct: 367 LERGEKLLDELISSGQK--LISGFKAFELYDTYGFPLELTVEIAEENSIS-VDVKGFEEE 423 Query: 422 LEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + Q+ RA+A S + G+ E+ + + T F GYDLL Sbjct: 424 MNAQKERAKAASSNIDLTLEGSLEREI----DLFNKTVFNGYDLLLS------------- 466 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + +K I +V++A GQKV +V DQT FY E+GGQ+GD G Sbjct: 467 ----------EAEIKGIFLDSTLVKQASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSKD 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + + +V +K + +F+H+ +++GIL + + NR + + NH+ATHLL AL Sbjct: 517 LEVLVDNVMRK-KNVFLHYGTIKKGILTIGQKVKTNVSSSNRAKAAANHTATHLLQSALK 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +++ V Q GS + + LRFD S PI+ ++ IE VN I +N + + M++ + Sbjct: 576 SVVNESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHALEIKNMSKSE 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA A+ G KY+D VRVV+V GV S LCGGTHV +T E+ I+SE I A Sbjct: 636 ALEKGAVAMFGEKYDDEVRVVNVP----GV-SMELCGGTHVKTTSELGSFKIISEEGISA 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA++GQ A + ++ + L+ LK + + RV + E LI+ ++ Sbjct: 691 GVRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQAE-----LINKNKE 745 Query: 779 LQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDA---LQKKI-QSGIIML 827 +Q ++++ K + VN S +++++D + S+ A L + I++L Sbjct: 746 IQKMKDEIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVIL 805 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGPN 881 GI + +L VV+ L D + V + + K++ GGGGG+P+ AQ+G + Sbjct: 806 GGIPNPENRKLLFVVS--LGD--DPVKIGLHAGKIINEIARICSGGGGGKPNFAQAGAKD 861 Query: 882 GNKADQAIAGVASFLKK 898 +K A+ ++L+K Sbjct: 862 IDKLSDALDYAKNYLQK 878 >gi|268317116|ref|YP_003290835.1| alanyl-tRNA synthetase [Rhodothermus marinus DSM 4252] gi|262334650|gb|ACY48447.1| alanyl-tRNA synthetase [Rhodothermus marinus DSM 4252] Length = 953 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 352/983 (35%), Positives = 531/983 (54%), Gaps = 129/983 (13%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 IR +FL+FF++ GHE++PS+ L+P NDPTL+FTN+GM FK++F G Y+ Sbjct: 8 EQIRQSFLDFFREKGHEIVPSAPLVPQNDPTLLFTNAGMNQFKDVFLGIGTRPYKRAANT 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG HHTFFEMLGN+SFG YFK AI+ AW+LL + + LD R Sbjct: 68 QKCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKREAIRWAWELLVERWGLDPDR 127 Query: 125 LYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LY TV++ DE EA +LWK + + I T DNFW M +TGPCGPCSEI Sbjct: 128 LYATVHEGDEALGLEPDVEAAELWKSETSIDPSHIKFCPTKDNFWMMGDTGPCGPCSEIH 187 Query: 177 FD-----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 D + +P G+ + R IEIWNLVF+Q+ L +DTGMGLE Sbjct: 188 IDLRPDEERRRVP-GIELVNAGDPRVIEIWNLVFIQYNALPDGRLEPLKAKHVDTGMGLE 246 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK----YEGNNIVNH----------RVIVD 277 R+ VLQ KT+NYD DLF ++Q + +++ Y+ + + RV+ D Sbjct: 247 RIVAVLQGKTSNYDTDLFAPILQRAAELSPRDEVRGYDDIRVADERERERIRVALRVVAD 306 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H+R+ +F IADG++P N GRGYV+RRI+RRA+ Y + LG+ EP + L+ L +MG Sbjct: 307 HIRAIAFAIADGVVPGNTGRGYVIRRILRRAVRYGYQTLGFREPFLYRLVEPLAHKMGRV 366 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-------------------- 376 +PE+ + + +E +++E+E F TL GL + +L +L Sbjct: 367 FPEIERHRAYVERVIKAEEESFLATLGTGLAFFERLLPYLKAAAEGRPIEAIRADLLRDG 426 Query: 377 --------------------------GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ + G+VAF L+DT+G P+D+ Q + GL Sbjct: 427 QALDLLQKAYVDTSDREAIVEAFLKSAAEKNVPGEVAFLLHDTYGFPIDLTQLMAREEGL 486 Query: 411 AGIDIISFNQALEEQRSRARAHSLG----LGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G+D+ + + +E QR RARA S L + E W + E + F+GYD R Sbjct: 487 -GVDMARYEELMERQRERARAASTFGAAVLTADEEEAGWKRVSEGEDSV-FVGYDTTR-- 542 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ED ++ V +I + G + E+V DQTPFYAE+GG Sbjct: 543 ---VEDARI----------RAVRTI------------QTPEGPRHELVLDQTPFYAESGG 577 Query: 527 QLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q+GDTG +GD +++ D QK G VH+ V+R + + +D R+++ Sbjct: 578 QVGDTGVLRVGDE-EIRVLDTQKLG-GHIVHY--VDRLPKELDAPVEAIVDAARRKRIEK 633 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATHLLH AL ILG+HV Q GS + PD LRFD +H + +T L+ IE VN++I + Sbjct: 634 HHTATHLLHAALREILGTHVQQKGSLVAPDRLRFDFSHFERVTPELLRQIEARVNEVIQR 693 Query: 646 NLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N+P + R + E+AIA GA AL G KY DRVRV++ + S LCGGTHV++TGE Sbjct: 694 NVPRIEERDVPYEEAIARGAMALFGEKYGDRVRVITFDPN----FSMELCGGTHVAATGE 749 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + + I+SE S+ +GIRR+EA+ GQ A + Q +L+ + K Q + + + Sbjct: 750 LGVFRIISEGSVASGIRRVEALAGQDALDWINRQLTELEQARTQFKSLQRPLDEEIAVLL 809 Query: 765 EEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE R+L+ L ++K +L H++ + ++ + + EL+ + AL+ + Sbjct: 810 EEQRRLEKELAALRREQQKARLAKLIEQAHRVNGLRVVTGQLEALSMDELRELAQALRDQ 869 Query: 820 IQSGIIMLVGISKEKKASVLI--VVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMA 875 + + ++G + +K V + VT+D++ R ++ RL +V + GGGGGGRP +A Sbjct: 870 LGREGVAVLGTTDPEKQKVYLAAAVTDDVVAR--GLEAGRLVGQVARIVGGGGGGRPTLA 927 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 +GG K +A+ V +++ Sbjct: 928 TAGGRQPEKLHEALEAVPRLVQQ 950 >gi|257869401|ref|ZP_05649054.1| alanyl-tRNA synthetase [Enterococcus gallinarum EG2] gi|257803565|gb|EEV32387.1| alanyl-tRNA synthetase [Enterococcus gallinarum EG2] Length = 880 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 354/925 (38%), Positives = 533/925 (57%), Gaps = 77/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++SS +R FL+FFQ GH + PS+SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKHLSSAEVRQMFLDFFQSKGHSIEPSASLVPVNDPTLLWINSGVATLKKYFDGTVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W++ GL+ + I+ I DNFW + GPCGP SEIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWREEIGLTPEHIVEI--EDNFWDIG-AGPCGPDSEIF 173 Query: 177 FDQG-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+G E P PG E ERY+EIWNLVF +F Q LP +IDTGMG Sbjct: 174 YDRGPEFNDVAEDDPENYPGG--ENERYLEIWNLVFSEFNHQADGTYEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286 LERM +++Q N++ DLF +I+A ++++G G + ++ +VI DH+R+ SF I Sbjct: 232 LERMVSIIQNAPTNFETDLFMPIIEAVQELSGNFAYGESKATDISFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE++ + Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIDSAFLYKLVPIVGKIMESYYPEVLAQQAF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V++ + D E L G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRNEEERFHETINEGLEILNQVIAKVKADGQETLAGADIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLG-LGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D F + ++ QR+RAR+ L G + +K + ++F+GY+ L Sbjct: 412 AQDEGLK-VDHAGFEKEMDAQRARARSARSTELSMGVQSALLTDIKVE---SRFVGYESL 467 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 +S + I+Q+ ++++ +G+ +++F +TPFYAE Sbjct: 468 EA-----------------------NSELLVIIQEEQLLDTVTTGE-AKLIFKETPFYAE 503 Query: 524 AGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG + I +ITDV+K G F+H A V G L S L +D R Sbjct: 504 MGGQVADTGTVVDQSGVIVAEITDVKKAPNGQFLHTAKV-TGNLTEGASYFLQVDQHRRN 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH+ATHLLH AL +LGSH +Q GS + P LRFD +H +T+ EL +E VN Sbjct: 563 KIIKNHTATHLLHKALKEVLGSHANQAGSLVAPGHLRFDFSHFGQVTADELSQMEQIVNQ 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + LPVVT + + A GA AL G KY VRVV+V S LCGGTHV++ Sbjct: 623 KIWEALPVVTIETDIDTAKGMGAMALFGEKYGQDVRVVNV-----ADWSIELCGGTHVAN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T +I + IVSES I AG+RRIEA+T Q A + L + +LK++A +K +Q +VV + Sbjct: 678 TEDIGIFKIVSESGIGAGVRRIEAVTSQEAYALLHEGEAQLKAIAGIVKSAQIKDVVSKT 737 Query: 761 E-------EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813 E ++ +E + L A ++ +D+ ++ + F++ ++ D +L+ + Sbjct: 738 EQLQQQLRDLQKENQALASKLANQQAGDVFKDVK--EVNGIRFIAAKVTVKDMNQLRQLA 795 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGR 871 D ++K S +++L + + K ++L +T ++ A DL + ++ KV GGGGGR Sbjct: 796 DQWKQKELSDVLVL-ATANDGKVNLLAAMTPQANEKGLKAGDLIKHIAPKVG--GGGGGR 852 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MAQ+GG D A+ VA++L Sbjct: 853 PDMAQAGGKQPEGIDAALTEVANWL 877 >gi|282866222|ref|ZP_06275269.1| alanyl-tRNA synthetase [Streptomyces sp. ACTE] gi|282559006|gb|EFB64561.1| alanyl-tRNA synthetase [Streptomyces sp. ACTE] Length = 889 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 354/923 (38%), Positives = 515/923 (55%), Gaps = 80/923 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP VT+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+ LT F Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQFAWEALTNSVEDGGFG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL+ITVY +D+EA ++W++ G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LDPERLWITVYLDDDEAEQIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ + K + IL P +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKDDFPILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ D + ++ + ++TG++Y E + V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVRYGAEHGSDVSLRVVADHIRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T ++ L+ + MG YPEL+ + +E Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGQVVKDLVDVVIDTMGQQYPELVTDRKRVETVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F K L G +LD +S ++L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKALKGGTNILDTAVSETKATGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A + +G + + + + G T+F GY Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADNSGLTEFTGYTS------ 470 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T G S+IV +V G A G +VEVV D+TPFYAE GGQL Sbjct: 471 ----------------TQGESTIVGLLVD-GVPSPAATEGDEVEVVLDRTPFYAEGGGQL 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + G +Q+ DVQ+ G+ VH V+ G + S++ ID RR ++ H Sbjct: 514 ADQGRIRLDTGAVIQVRDVQQPVPGVSVHKGSVQVGEVTVGSSVLAAIDTTRRRAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS +P RFD + L +E +N+++A+ L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQKINEVLAREL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ +DA GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + L LK GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELLK-------GRPEELPEKI 741 Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKSV 812 ++++ A++ LQ + K DV ++ + +V + +L+ + Sbjct: 742 SGMLGKLKDAEKEIEKFRAEKVLQAAAGLVESAK--DVRGVALVTGQVPDGTSADDLRKL 799 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869 + ++ ++Q G +V + L V+ + R A DL R +AK L GGGGG Sbjct: 800 VLDVRGRVQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGG 858 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+P +AQ GG N + A+A V Sbjct: 859 GKPDVAQGGGQNPDAIGDAVAAV 881 >gi|262384031|ref|ZP_06077167.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B] gi|262294929|gb|EEY82861.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_33B] Length = 873 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 340/914 (37%), Positives = 504/914 (55%), Gaps = 70/914 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV+ D D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D+ G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + + +LNG AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI FN+A+++Q+ RAR ++ + +G W +LKE G +F+GYDL Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERAR-NAAAIETGD----WITLKE--GECKFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 C+ + + I Q+ +++ ++V DQTPFYAE Sbjct: 471 E------------CEAEILRY--------RQIKQKNKVL--------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D ++ + D K+ + VH +V + + I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVAKLPKDVTATFTAKINVKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V + I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------SSVELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGR 759 G I L+++ ESSI AG+RRIEA+T + A + Q + +L++L + + + Sbjct: 674 GMIGSLHVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMPNLAQAMKKS 733 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +EE E ++++ ++ ++L E ++ ++ + + + ++ +K+V ++ + Sbjct: 734 IEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKAE 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + GI + K ++++++++DL+ +A + + +AK + GGGGG+PH A +G Sbjct: 794 TTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHI-QGGGGGQPHFATAG 852 Query: 879 GPNGNKADQAIAGV 892 G N A+ V Sbjct: 853 GKNMEGLSIAVGAV 866 >gi|331269730|ref|YP_004396222.1| alanyl-tRNA synthetase [Clostridium botulinum BKT015925] gi|329126280|gb|AEB76225.1| alanyl-tRNA synthetase [Clostridium botulinum BKT015925] Length = 879 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 343/909 (37%), Positives = 524/909 (57%), Gaps = 54/909 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ GH LPS S++P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ T+ + + Sbjct: 66 CQKCIRTG----DIENVGKTSRHATFFEMLGNFSFGDYFKNEVIPWAWEFTTEVLKMPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQGE 181 +LY+T+Y +D+EA+ +W + + I R+ DNFW GPCGPCSEI F D GE Sbjct: 122 KLYVTIYLDDDEAYDIWTSKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDNGE 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + +R +E WNLVF QF++ L +IDTGMGLERMAT++Q Sbjct: 181 IKSAEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNKLEFPNIDTGMGLERMATIMQGVE 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +++D K ++ + Y +++ ++ R+I DH+RS S +I+D +LP+NEGRGY Sbjct: 241 TIFEVDTIKSILDKVANLANTSYGEDSVKDMSLRIITDHVRSVSVMISDEVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + ++ ++ G AYPEL + K I++ + E+ERF Sbjct: 301 VLRRLLRRAARHGRLLGIQGTFLHKIVDSVVENSGDAYPELKEKKDYIKKVISIEEERFS 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D G+ +L + L K+ +IL+G+ FKLYDT+G PL++ ++IL + + +D+ Sbjct: 361 ETIDSGMEILKEYIEELEKENKKILSGEKVFKLYDTYGFPLELTEEILEEKNMT-VDMDG 419 Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN+ ++ QR RARA S GT K+ ++ + T+F GY+ L Sbjct: 420 FNKEMKVQRERARAARSESTYMGTDVKVIDTIPSEI-ETKFDGYNNLE------------ 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + S +K I++ + + G+K +V D+TPFYAE GGQ+GD G Sbjct: 467 -----------LQSQIKVIIKNDDFADCIKKGEKGIIVTDKTPFYAEMGGQIGDKGTISA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG ++ + +K G +H V G + ++L +D + R +S NHS THLLH A Sbjct: 516 DGFVAKVENCKKNIGGKIIHFVEVVEGSINLGNEVLLEVDKRRRDNVSKNHSTTHLLHAA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q+GS + D LRFD TH + +T EL +ED VND+I++ V T M Sbjct: 576 LRKVLGDHVHQSGSYVDEDKLRFDFTHFEGVTQEELTKVEDLVNDVISKVYEVETNEMTI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A SGA AL KY D+VRVV + G S LCGGTH+S+ G+I L IVSES I Sbjct: 636 EEARQSGAMALFDEKYGDKVRVVKM-----GNFSVELCGGTHISNIGKIGLFKIVSESGI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQL 772 AGIRRIEA+TG +A + + L+ +A LK S+ ++V R+ E+ E+ +++ Sbjct: 691 AAGIRRIEAVTGTKALEFMKDKSNLLREVAEMLKCSEKDIVNRLNQQNLELKEKEKEIAA 750 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLVG 829 + K KL ED + I ++ + ++ +VD + L+++ D ++ K+ SG+++L G Sbjct: 751 L--KSKLASGSEDEILNNIKEIKGIKLAVADLKDVDGEALRNLGDKIKNKLGSGVVVL-G 807 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K + + ++D++ + + + R AK+ GGGGGGRP MAQ+GG K A Sbjct: 808 SEVEGKVQFIAMASKDVVSKGVHCGTIVREIAKI-AGGGGGGRPDMAQAGGRLPEKLKDA 866 Query: 889 IAGVASFLK 897 + V + ++ Sbjct: 867 MNAVENIME 875 >gi|298491784|ref|YP_003721961.1| alanyl-tRNA synthetase ['Nostoc azollae' 0708] gi|298233702|gb|ADI64838.1| alanyl-tRNA synthetase ['Nostoc azollae' 0708] Length = 880 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 338/899 (37%), Positives = 521/899 (57%), Gaps = 55/899 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+F+ + GHELLPS+SL+P DPT++ T +GM+PFK IF GQ P ++ TT Sbjct: 11 NDIRALFLDFYTQRGHELLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPDFKRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W+L T+ F L R Sbjct: 70 QKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWELSTQVFRLPPER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V++ED+EAF +W+ G++ +I R+ ++NFW TGPCGPCSEI +D + Sbjct: 126 LVVSVFEEDDEAFGIWRDKIGVNEKRIKRMGADENFWVSGPTGPCGPCSEIHYDFHPEL- 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ K NNY Sbjct: 185 GEDNIDLEDDSRFIEFYNLVFMQYNRDASENLTPLQNKNIDTGMGLERMAQILQNKPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + +V + Y + + V+ +VI DH+RS +IAD I +N GRGYVL Sbjct: 245 ETDLIFPIIETAAKVAKIDYHHSDEDTKVSLKVIGDHIRSVVHMIADEIRASNVGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G E + + + S YP L Q + I+ L+ E+ F KT Sbjct: 305 RRLIRRVVRHGRLIGICEEFINQVAERAISLSESVYPNLRQREASIKAELQREEANFLKT 364 Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRG LL ++ + + + ++G AF LYDT+G PL++ Q++ L +D+ FN Sbjct: 365 LDRGEKLLAEIIQEVKQKGLTSMSGKSAFTLYDTYGFPLELTQEVAEENNLT-VDVDGFN 423 Query: 420 QALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 +++Q RA+A ++ L T + L E T+FIGY Sbjct: 424 AEMQKQVERAKAAHETIDL---TVQGSLDKLVEHIHTTEFIGYTA-----------AATT 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 K + L G+S E A +G++V++V D+TPFYAE+GGQ+GD G GD Sbjct: 470 AKVEVLLVGGISE------------ETAEAGREVQIVLDRTPFYAESGGQIGDKGYISGD 517 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G+ +++ +V+K+++ FVH +E G LR ++ I+ RR+ NH+ATHLL AL Sbjct: 518 GVLVRVEEVKKESD-FFVHFGHIESGTLRIGDNVKAQINTAYRRRSQANHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++ +SQ GS ++ D LRFD + +TS E++ IE+ VN I++ ++ Sbjct: 577 KKVVDEGISQAGSLVSFDRLRFDFNCPRALTSEEVQQIEELVNTWISEAHSAKIEVLPLA 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY + VRV+ E GV S LCGGTHV++TGEI + I+SE+ + Sbjct: 637 EAKARGAVAMFGEKYGNEVRVI----EFPGV-SMELCGGTHVNNTGEIGVFKIISEAGVS 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +GIRRIEA++G +L +D+ + L+ LKV + R+ + E R + Sbjct: 692 SGIRRIEAVSGAAILDYLNVRDKVVNDLSDRLKVKPEEIPDRIRTLQTELRNSEKEIQTL 751 Query: 778 KLQLNV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + + L + +A+ + + +VD++ LK+ + L + I +G ++L I + Sbjct: 752 KSQLAIVKSDSLLKTAKTVAEHRIIVAQMEDVDAESLKAAAERLLQTIGNGAVVLASIPE 811 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889 K S++ + ++ + V+ + + + GGGGG+P++AQ+GG + +K QA+ Sbjct: 812 AGKVSIVAAFSSEVNKK--GVEAGKFVGAIARICSGGGGGKPNLAQAGGRDASKLPQAL 868 >gi|119487555|ref|ZP_01621165.1| alanyl-tRNA synthetase [Lyngbya sp. PCC 8106] gi|119455724|gb|EAW36860.1| alanyl-tRNA synthetase [Lyngbya sp. PCC 8106] Length = 891 Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust. Identities = 355/910 (39%), Positives = 520/910 (57%), Gaps = 66/910 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL F+ + GH+++PS+SL+P DPT++ T +GM+PFK IF GQ P TT Sbjct: 11 SEIRQKFLNFYAERGHKIMPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRPPEVPRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK +AI W+L T+ F L R Sbjct: 70 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKTQAIAWGWELSTEVFGLPPER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+++D+EAF++W+ G+ A +I R+ +DNFW TGPCGPCSEI++D + Sbjct: 126 LVVSVFEDDDEAFEIWRDEIGIPAHRIQRMGEDDNFWKSGPTGPCGPCSEIYYDFHPEL- 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ NNY Sbjct: 185 GDDKIDLEDDTRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQSVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + + G+ Y+ ++ V+ +VI DH+R+ LI DG+ +N GRGY+L Sbjct: 245 ETDLIFPIIKTAADIAGIDYKKSDKKTQVSLKVIGDHVRAVVHLITDGVTASNIGRGYIL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + YP+ + + +I+ L+ E+ERF +T Sbjct: 305 RRLIRRVVRHGRLIGIEGEFTTKVAETAIRLSEEVYPQTRERETVIKAELQREEERFLET 364 Query: 362 LDRGLVLLDGVLSHLGKDEI------------LNGDVAFKLYDTHGLPLDIMQDILCARG 409 L+RG LL ++ EI ++G AF LYDT+G PL++ Q+I G Sbjct: 365 LERGEKLLTDIIEKAISKEIPPQSPLSKGGGMISGKDAFVLYDTYGFPLELTQEIAEESG 424 Query: 410 LAGIDIISFNQALEEQRSRAR-AH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 L +D+ F +EEQR+R++ AH ++ L T + L E T F+GY S+ Sbjct: 425 LT-VDVSGFEVEMEEQRNRSKDAHETIDL---TVQGSLDKLAENIHPTAFLGY-----SE 475 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + E ++VK I+ +G+ VE A +G KV++V DQTPFYAE+GGQ Sbjct: 476 LVSE------------------AVVKVILIEGKSVESAEAGTKVQIVLDQTPFYAESGGQ 517 Query: 528 LGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 +GD G + GD + +++ DVQK++ IF+H VERGIL M++ ID RR+ N Sbjct: 518 IGDRGFLSFGDTV-VRVKDVQKES-NIFIHLGKVERGILTVGMTVNAQIDRACRRRAQAN 575 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLL AL I+ +SQ GS ++ + LRFD + +T E++ +ED VN IA+ Sbjct: 576 HTATHLLQSALKLIVDPTISQAGSLVSFERLRFDFNCPRSLTPEEVQQVEDQVNSWIAEA 635 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 P + M EDA GA A+ G KY+D VRVV GV S LCGGTHV++T EI Sbjct: 636 HPAIVAEMPLEDAKNKGATAMFGEKYSDVVRVVDY----AGV-SMELCGGTHVNNTAEIG 690 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L IVSE+ I +GIRRIEA+ GQ +L +D +K L K + R+ + E Sbjct: 691 LFKIVSETGISSGIRRIEAVAGQSVLDYLKVRDNVVKELGDRFKAKPEELPERITNLQNE 750 Query: 767 YR--KLQLIHAKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + + QL AK +L + D I D+ + + VD+ LK + LQ+K+ Sbjct: 751 LKATQKQLEAAKGELAIAKSDQLLAEAETIGDIKILVAELPGVDADSLKKAAERLQQKLG 810 Query: 822 SGIIMLVGISKEKKASVLIVVTEDL--LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 ++L +E K S++ + + + A AK+ GGGGGGRP+ AQ+GG Sbjct: 811 ESAVVLGSSPEEGKVSLVAAFSAKVHKEKKLQAGKFIGNIAKIC-GGGGGGRPNFAQAGG 869 Query: 880 PNGNKADQAI 889 + +K +A+ Sbjct: 870 RDASKLSEAL 879 >gi|218437893|ref|YP_002376222.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7424] gi|218170621|gb|ACK69354.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7424] Length = 881 Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust. Identities = 350/901 (38%), Positives = 526/901 (58%), Gaps = 58/901 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ FL+FF KN H++LPS+SL+P DPT++ T +GM+PFK IF GQ+KP Y TT Sbjct: 11 SEIRSYFLDFFAKNQHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQKPDYPRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK F L + Sbjct: 70 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVFKLPPDQ 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 + ++V++ED+EAF++W+ + +I R+ DNFW TGPCGPCSE+++D + Sbjct: 126 IVVSVFEEDDEAFEIWRDKINIPPQRIKRMGKKDNFWQAGPTGPCGPCSELYYDFHPEL- 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ Q + L +IDTGMGLERMA +LQ+ NNY Sbjct: 185 GDKTIDLEDDSRFIEFYNLVFMQYNQDAEGNLTPLQNKNIDTGMGLERMAQILQKVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +IQA+ + ++Y + V+ +VI DH+R+ +IADGI +N GRGYVL Sbjct: 245 ETDLIFPIIQAAADIAKIEYKKADEKTKVSLKVIGDHVRAVVHMIADGITASNTGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + +AYP + Q + I+ L E+ F T Sbjct: 305 RRLIRRVVRHGRLIGIEGAFINQVAEVAIALSETAYPNVRQRETPIKGELDREEAAFLTT 364 Query: 362 LDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+RG LL +++ + K + ++G AFKLYDT+G PL++ Q+I GL +++ F+ Sbjct: 365 LERGEKLLSEIIAKVKKSKKKQISGVDAFKLYDTYGFPLELTQEIAEEEGLT-VNVEEFD 423 Query: 420 QALEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + +++Q+ +++A ++ L G+ +K L E T+F+GY Sbjct: 424 EEMKKQQDQSKAAHETIDLTVQGSLDK----LAEHIHPTEFLGY---------------- 463 Query: 477 CQKPPIDLTNGVS-SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 T+ S + V+ ++ G+ V+ A +G +V++V +QTPFYAE+GGQ+GD G Sbjct: 464 --------TDAQSVAHVEVVLVDGKTVDSAEAGTEVQIVLNQTPFYAESGGQIGDKGYLT 515 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 G+ + +++ DVQK++ FVH VERG + S+ TID RR++ +H+ATHLL Sbjct: 516 GETLVVRVEDVQKES-AFFVHFGRVERGTITVGDSVTATIDRACRRRVQAHHTATHLLQA 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL I+ VSQ GS +T D LRFD +P+T EL+ IED +N+ IA+ IM Sbjct: 575 ALKKIVDDSVSQAGSLVTFDRLRFDFNCPRPVTPEELQQIEDLINNWIAEAHEAHVSIMA 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A A GA A+ G KY VRV+ V GV S LCGGTHV +T EI L I+SES Sbjct: 635 LEEAKAKGAVAMFGEKYGAEVRVLDVP----GV-SMELCGGTHVRNTAEIGLFKIMSESG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLI 773 + AGIRRIEA+ G +L ++ +K L KV + R+ + E + + Q+ Sbjct: 690 VAAGIRRIEAVAGPAVLEYLNEREAVVKDLCDRFKVKPHEISDRITALQSELKSTQKQME 749 Query: 774 HAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 +++L + D + + D + I VD L + + LQ+K+ ++L I Sbjct: 750 SLQQELAIAKSDQLLSNAESVGDFKVLVAEIEGVDPNGLMTAAERLQQKLGESAVILGSI 809 Query: 831 SKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 E K S++ + ++ + A AK+ GGGGGGRP++AQ+GG + +K +A Sbjct: 810 PSEGKVSLVAAFSPKVIKEKKLQAGKFIGEIAKIC-GGGGGGRPNLAQAGGRDSSKLKEA 868 Query: 889 I 889 + Sbjct: 869 L 869 >gi|297564703|ref|YP_003683675.1| alanyl-tRNA synthetase [Meiothermus silvanus DSM 9946] gi|296849152|gb|ADH62167.1| alanyl-tRNA synthetase [Meiothermus silvanus DSM 9946] Length = 894 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 342/877 (38%), Positives = 499/877 (56%), Gaps = 71/877 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA-- 60 + IR +L+FFQ GH LPS S+IP +DP+L+F N+GM P K F G+ P++ Sbjct: 4 TTAEIREKYLQFFQSKGHLRLPSFSVIPQDDPSLLFINAGMTPLKPYFLGK-TPIFHTPE 62 Query: 61 -------VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 VTT QKCVR G D++NVGRTNRH T FEMLGNFSFG YFK+ AI AW+ Sbjct: 63 GEKISYRVTTCQKCVRTG----DIENVGRTNRHQTVFEMLGNFSFGDYFKKEAILWAWEF 118 Query: 114 LT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAET 166 LT + L+ R+Y+T+Y+ED+EAF+ W + GL +++ R ++NFW S Sbjct: 119 LTDKRWLGLEPERIYVTIYEEDDEAFEYWTQDVGLPPERLHRFGADENFWPADAPSKGPN 178 Query: 167 GPCGPCSEIFFDQGECIPGGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 GPCGPCSEI++D+G + E R++EIWNLVF Q+++++ LPK + Sbjct: 179 GPCGPCSEIYYDRGPEFGADTWADYYQTRESNRFVEIWNLVFPQYDRKDGGILEPLPKPN 238 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283 IDTGMGL R+A VLQ T+ Y+ D FK +I +++G+ YEG + + HRVI +H R+ S Sbjct: 239 IDTGMGLARVAMVLQGVTDFYETDEFKPIIAKVVELSGVSYEGPSSLAHRVISEHARAVS 298 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 F+++DG +N GRGYV+RR++RRA+ Y LLG EP M L + MG YPEL + Sbjct: 299 FILSDGATFSNTGRGYVVRRLLRRAVRYGYLLGLREPFMHRLAAVVAEVMGGVYPELREN 358 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 +++ +R E+ERF +TL++G+ LD +LS L + L+G+ AF+LYDT+G PLD+ + Sbjct: 359 LESVQKQIRLEEERFFETLEQGVERLDALLSGLEPGDTLSGEEAFRLYDTYGFPLDLTLE 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRAR---AHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I RG+ +D F +ALEE + AR A + E + ++ G T F+GY Sbjct: 419 IADERGIK-VDTEGFQKALEEAQELARQRAAFDKDVFKRPNEAL-LAIARDSGGTVFVGY 476 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + ++ VK ++ + ++EA +G +V+VV D+TPF Sbjct: 477 E-----------------------RTEETAQVKLLLAGNQSLDEAPAGTEVQVVLDRTPF 513 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE GGQ+GD G G +++ QK +GI++H A VE G L+ ++ +D +R Sbjct: 514 YAEGGGQIGDFGVLEWAGGWAKVSTTQKNPDGIYLHLAKVEEGTLKAGTTVRALVD-PHR 572 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 R NH+ATHLLH AL ILG+HV Q GS + PD LRFD TH +P++ EL IE VN Sbjct: 573 RDTEKNHTATHLLHAALRAILGTHVRQAGSYVGPDRLRFDFTHPEPVSPRELARIELLVN 632 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE-----YEDGGVHSSALCG 695 I + PV E+A GA AL G KY D VRVV+VE G S LCG Sbjct: 633 RWIQGDFPVSYTYKPLEEAKKEGAMALFGEKYADVVRVVAVEGTADNVAAGTAISKELCG 692 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 G HV TGEI + I E ++ +G+RRIEA+TG A ++ + L++L+ L V+ Sbjct: 693 GCHVRRTGEIGMFVIRFEEAVSSGVRRIEALTGTGAVQYVRENLDVLQALSRELGVNPEG 752 Query: 756 VVGRVEEIWEEY--RKLQLIHAKRKL---QLNVEDLSCHKIA-DVNFMSHIISEVDSKEL 809 + R+ ++ E R+ ++ +R+L QL S K A +++ + ++ L Sbjct: 753 LPERLGKLQNEIKAREKEIERLRRELARAQLGGGTASALKEAGGYQYLAVRLEGLEVGAL 812 Query: 810 KSVMDALQKK-------IQSGIIMLVGISKEKKASVL 839 +S D L K + SG +++ +SKE +A L Sbjct: 813 RSAADELLDKHKADLVAVGSGQNLVIKLSKEAQAKGL 849 >gi|256826954|ref|YP_003150913.1| alanyl-tRNA synthetase [Cryptobacterium curtum DSM 15641] gi|256583097|gb|ACU94231.1| alanyl-tRNA synthetase [Cryptobacterium curtum DSM 15641] Length = 878 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 348/914 (38%), Positives = 504/914 (55%), Gaps = 72/914 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQ 59 + IR +L +F+ G + +PSSSLIP +DP+L+ T++GMV FK F Q E P Y Sbjct: 2 TTAEIRERYLRYFESKGCKRMPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAP-YI 59 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 TT QKCVR ND+D +G RH +FFEMLGNFSFG YFKE A D E Sbjct: 60 GTTTAQKCVRT----NDIDLIGTDGRHLSFFEMLGNFSFGAYFKEEMCAWALDFSLNELG 115 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + +LY TVY++D+E ++WK + G+ A I ++ DNFW TGPCGPCSE+++DQ Sbjct: 116 LPKEKLYFTVYEDDDETIEIWKNL-GIEASHISKMGEEDNFWRAGPTGPCGPCSELYYDQ 174 Query: 180 GECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G + G P + E +R++E WN VF Q++ Q LPK +IDTGMGLERMA +L Sbjct: 175 GPEVGCGRPDCAPGCECDRFLEYWNCVFTQYDAQEDGTLKPLPKKNIDTGMGLERMAAIL 234 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295 Q ++N+D D+ + L+ E+++G Y ++ + RV+ DH RS +F+IADGILP+NE Sbjct: 235 QSVSSNFDTDVLRGLVAVGERLSGRSYGASDADDRALRVMADHSRSMTFMIADGILPSNE 294 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ LLG + + + MGS Y EL++ + LI+ + SE+ Sbjct: 295 GRGYVLRRLLRRAVMKGHLLGIEGAFLGSFVDEIIQVMGSEYAELVENRDLIKRVVASEE 354 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERFG TL +G L L L +L+G+VAF L+DT+G PL++ Q+I CA +D+ Sbjct: 355 ERFGSTLRQGRAYLQEALDGLSGG-LLSGEVAFTLHDTYGFPLEVTQEI-CAESGIEVDV 412 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIW-------FSLKEKYGATQFIGYDLLRGSKF 468 FN ++EQRSRAR + E W +L E+ GAT F GYD Sbjct: 413 EQFNHLMDEQRSRARRAT----QDDAEAAWSTYDGSMAALLEQVGATVFTGYD------- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 N + V+A+++ GE V +G+ VV D++PFYAE GGQ+ Sbjct: 462 ----------------ENKSAGHVRALLRDGESVCTLSAGEAGCVVLDRSPFYAEMGGQV 505 Query: 529 GDTGCAIG-DGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 DTG DG ++TDV+ G+ VH+ VE+G + ++ +ID R ++ N Sbjct: 506 ADTGTITSPDGASCARVTDVKAPESGLIVHYVQVEQGSFTIDDEVIGSIDVARRERIRRN 565 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATH+LH LS +LG+HV Q GS + P+ LRFD TH + I A L IE+ N +I + Sbjct: 566 HTATHILHKVLSEVLGNHVKQAGSYVAPNRLRFDFTHFEAIDRATLDEIENVANRVIMEA 625 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 PV T ++A G AL G KY + VRVV + DG S LCGGTHV +T EI Sbjct: 626 HPVHTYETTLDEAREQGVTALFGEKYGEVVRVVDI---DG--FSRELCGGTHVRNTSEIG 680 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + IVSE S A +RRIEA+T A ++ ++L+ A+ V +V R E+ Sbjct: 681 FVKIVSEQSTGANMRRIEAVTSFDALAYTDRMRDELRQTAAVFGVPLFDVNERAAIATEQ 740 Query: 767 YRKLQLIHAKRKLQLNV---------EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + LQ AKR ++ V + +S + A + + + +D+ L++ D + Sbjct: 741 LKTLQ-AQAKRAKKIAVASDIRTLVDKAISTSR-AGYPVLIYRLDGMDAGSLRNTWDIAR 798 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG--GGGGGRPHMA 875 + G V ++ + + LI+ D + +V G GGGGG+P MA Sbjct: 799 AHL--GETCAVVLASDNEGKPLIMAAGTDAAVAAGFDAGAIIKEVAGAISGGGGGKPSMA 856 Query: 876 QSGGPNGNKADQAI 889 Q+GG + D+A+ Sbjct: 857 QAGGKDPAGLDEAL 870 >gi|194017184|ref|ZP_03055796.1| alanyl-tRNA synthetase [Bacillus pumilus ATCC 7061] gi|194011052|gb|EDW20622.1| alanyl-tRNA synthetase [Bacillus pumilus ATCC 7061] Length = 878 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 346/912 (37%), Positives = 514/912 (56%), Gaps = 62/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SL+P +DPTL++ NSG+ K F G+ P + Sbjct: 7 AQVRQMFLDFFKEKGHAVEPSASLVPHDDPTLLWINSGVATLKKYFDGRVVPENPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSDEWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +TV+ EDEEA+ LW+ G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 NLLSVTVHPEDEEAYVLWRDKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGES 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF +F LPK +IDTGMGLERM +V Sbjct: 180 YGDDMNDPELYPGG--ENERYLEVWNLVFSEFNHNPDGSYTPLPKKNIDTGMGLERMVSV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q N+D DLF +I+A E ++G Y +VI DH+R+ +F ++DG LP+N Sbjct: 238 IQNVPTNFDTDLFMPIIRAVETISGESYGETKEKDTAFKVIADHIRTVAFAVSDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ + P M L+P + M YP++ + I + +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKTIHIHRPFMFDLVPVVAEIMKDFYPDVQAKEEFIAKVIKNE 357 Query: 355 DERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +ERF +TL+ GL +L V+ G +I DV FKLYDT+G P+++ ++ + Sbjct: 358 EERFHETLNEGLAILSEVIKKERDKGSTQISGEDV-FKLYDTYGFPVELTEEYAEDENMT 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RAR +GS + +L + + F+GY+ L + E Sbjct: 417 -VDREGFQAEMEKQRERARNARQDVGSMQVQG--GALGDIKVESTFVGYENLTADAHIVE 473 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++Q GEIV EA G V+++ D+TPFYAE+GGQ+ D Sbjct: 474 -----------------------LLQNGEIVTEAHEGDTVQILLDETPFYAESGGQVADK 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + + I DV+K G VH +V G + + + ++ R+ + NH+ATH Sbjct: 511 GTLKSAEVNIDIKDVKKAPNGQHVHEGVVVSGTAKKGLEVTAEVESALRKGIVKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LGSHV+Q GS + + LRFD +H +T EL IE VN+ I + + V Sbjct: 571 LLHQALKDVLGSHVNQAGSLVNENRLRFDFSHFGQVTKEELSQIEKIVNEKIWEGISVAI 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L I Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVQNTAEIGLFKIA 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I AG RRIEA+TG+ A L Q L+ AS LK + +V R+ + + +++Q Sbjct: 686 SESGIGAGTRRIEAVTGKGAYEELNDQLTILEQAASELKSNTKDVPKRIASLQADLKEVQ 745 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +L+ + +I V ++ ++ D L++++D L+ K+ S +I+ Sbjct: 746 RENESLLAKLSQAEAGSILEKVTEIGGVKVLTEKVNAKDMNHLRTMVDDLKAKLGSAVIV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G + K ++ VT+D++++ +A L + +A++ GGGGGGRP MAQ+GG K Sbjct: 806 L-GAVQNGKVNISAGVTKDVIEKGLHAGKLVKQAAEIC-GGGGGGRPDMAQAGGKQPEKL 863 Query: 886 DQAIAGVASFLK 897 ++A+A V +K Sbjct: 864 EEALAIVEESVK 875 >gi|90962086|ref|YP_536002.1| alanyl-tRNA synthetase [Lactobacillus salivarius UCC118] gi|122448814|sp|Q1WT32|SYA_LACS1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|90821280|gb|ABD99919.1| Alanyl-tRNA synthetase [Lactobacillus salivarius UCC118] Length = 880 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 352/932 (37%), Positives = 524/932 (56%), Gaps = 86/932 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+FF+ GH+++ S+ LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T+ QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+LLT Sbjct: 61 HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD+D+ +LYITVY ED++A K W+++ G+ I DNFW + E GP GP SEIF Sbjct: 117 WFDMDKEKLYITVYPEDKDAKKYWEEV-GVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 172 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 FD+G+ + P PG E ERY+EIWN+VF +F + LP +IDTGMG Sbjct: 173 FDRGQEMNNLPEDDPESYPGG--ENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMG 230 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286 LER+ +V Q N++ DLF +I+ + +++ K G N V+ +VI DH R+ +F I Sbjct: 231 LERVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAI 290 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYV+RR++RRA+ + + LG E + L+P + M SAYPE+++ Sbjct: 291 GDGALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEF 350 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++ E++RF TL G+ LLD +++ ++ + L G FKLYDT+G PL++ ++ Sbjct: 351 IEKVIKMEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEY 410 Query: 405 LCARGLAGIDIISFNQALEEQR-----SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 GL +D FN+ +E+Q+ +R+ A S+G+ +G I S ++++G Sbjct: 411 ANDEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGLLTDITTS-------SEYVG 462 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 Y L+ NGV +K I+ E+V+ + + +V+FD+TP Sbjct: 463 YHELKA--------------------NGV---LKDIIIDNELVDTVPADSRAQVIFDKTP 499 Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVH--HAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + ++ DVQ G +H HA+ E + E + L + Sbjct: 500 FYAEMGGQVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKE---MTRENTYSLEV 556 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D ++ NH+ATHLL AL +LGSH Q GS + P LRFD T+ +T+ +LK I Sbjct: 557 DVAFHNKVKKNHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKI 616 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 ED VN I +N+ V T + ++E A GA AL G KY D VRVV V G +S CG Sbjct: 617 EDIVNAKIWENIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCG 671 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV++T EI L IVSES + AG+RRIEA+T + A L +++ L+ A LK+ Q Sbjct: 672 GTHVANTNEIGLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIK 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVD---SKE 808 V R E +E KL L K+ L+ I D+N + I +V+ + Sbjct: 732 EVPRKIEQLQEQVKL-LEQQKQALEDKFASQQAGDIFKNIKDINGKTLIAGQVNVSGMSQ 790 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGG 866 L+ + D ++K S +++L + + K +++ ++ D + + A DL + ++ KV G Sbjct: 791 LRQLADQWKEKQLSDVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVG--G 848 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGGRP +AQ+GG +A+ +L K Sbjct: 849 GGGGRPDLAQAGGKKPEGIQEALKAAEDWLNK 880 >gi|218129222|ref|ZP_03458026.1| hypothetical protein BACEGG_00798 [Bacteroides eggerthii DSM 20697] gi|217988600|gb|EEC54920.1| hypothetical protein BACEGG_00798 [Bacteroides eggerthii DSM 20697] Length = 873 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 344/923 (37%), Positives = 509/923 (55%), Gaps = 87/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PGS +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHVDSRSEEEKAKVPGSQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A + G Y N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIGDMAGTTYGVNEQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGGAYPELNVQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LI + ++ E++ F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIAKVIKEEEDSFLRTLETGIRLLDKTMADAKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL + DI F+ +++Q+ RAR ++ + +G W +L+E G T+F+GY Sbjct: 418 LILRENDMTA-DIKEFDAEMQQQKQRAR-NAAAVETGD----WITLQE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D+TPF Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------YQIVLDKTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHLEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS + D LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGDHVEQKGSLVNSDSLRFDFSHFQKVTDEEIRQVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756 ++TG I ++ IVSESS+ AG+RRIEA TG R L + ++ L + + G + Sbjct: 671 AATGNIGMMKIVSESSVAAGVRRIEAYTGARVEEMLDTFQDTMRDLKALFNNAPDLSGAI 730 Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 +EE E++ K + K KL N+++++ K+ + F + +I + +K Sbjct: 731 RKYIEENAGLKKQVEDFMKEKEAQLKEKLLQNIQEINGVKV--IKFCAAMIP---ADAIK 785 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G E K + ++++++L+ A +L + +AK++ GGGG Sbjct: 786 NIAFQLRGEITENLFFVAGTVFEGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 844 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + A+ V Sbjct: 845 GQPHFATAGGKNPDGLSAAVDKV 867 >gi|301310907|ref|ZP_07216836.1| alanine--tRNA ligase [Bacteroides sp. 20_3] gi|300830970|gb|EFK61611.1| alanine--tRNA ligase [Bacteroides sp. 20_3] Length = 873 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 340/914 (37%), Positives = 503/914 (55%), Gaps = 70/914 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV+ D D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D+ G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + + +LNG AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI FN+A+++Q+ RAR ++ + +G W +LKE G +F+GYDL Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERAR-NAAAIETGD----WITLKE--GECKFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 C+ + + I Q+ +++ ++V DQTPFYAE Sbjct: 471 E------------CEAEILRY--------RQIKQKNKVL--------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D ++ + D K+ + VH +V + + I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVAKLPKDVTATFTAKINVKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V + I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------SSVELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGR 759 G I L ++ ESSI AG+RRIEA+T + A + Q + +L++L + + + Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMPNLAQAMKKS 733 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +EE E ++++ ++ ++L E ++ ++ + + + ++ +K+V ++ + Sbjct: 734 IEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKAE 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + GI + K ++++++++DL+ +A + + +AK + GGGGG+PH A +G Sbjct: 794 TTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHI-QGGGGGQPHFATAG 852 Query: 879 GPNGNKADQAIAGV 892 G N A+ V Sbjct: 853 GKNMEGLSIAVGAV 866 >gi|254391331|ref|ZP_05006535.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] gi|197705022|gb|EDY50834.1| alanyl-tRNA synthetase [Streptomyces clavuligerus ATCC 27064] Length = 869 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 343/913 (37%), Positives = 512/913 (56%), Gaps = 84/913 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ KP + Sbjct: 1 MMESAEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLINAGMVPFKPYFLGETKPPFPR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117 T+VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+L+W+LLT Sbjct: 60 ATSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLSWELLTTPVED 115 Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 + L+ +L+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI Sbjct: 116 GGYGLEPEKLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKKDNFWSMGVPGPCGPCSEI 175 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMG 229 +D+G G G + ERY+EIWNLVFMQ+E+ + K++ IL P +IDTG+G Sbjct: 176 NYDRGPAF-GAEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLG 234 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIA 287 LER+A +LQ N Y+ D + ++ + ++TG++Y ++ V+ RVI DH+R+S LI Sbjct: 235 LERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHASDVSLRVIADHIRTSVMLIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + I Sbjct: 295 DGVTPGNEGRGYVLRRIMRRAIRNMRLLGATGPVVAALVDVVVRTMGEQYPELVTDRTRI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E +E+ RF KTL+ G +L+G ++ +L GD AF L+DT G P+D+ +I Sbjct: 355 EAVALAEEARFLKTLNAGTNVLEGAITEAKATGGTVLAGDKAFLLHDTWGFPIDLTLEIA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464 +GL+ +D F + ++EQR++A+A + +G + + + + GAT+F GY Sbjct: 415 AEQGLS-VDEDGFRRLMKEQRAKAKADAKAKKTGHADLSAYREVADGSGATEFTGY---- 469 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 T G S+IV +V G A G +VEVV D+TPFYAE Sbjct: 470 ------------------AATEGESTIVGLLV-DGVPSPAATEGDEVEVVLDRTPFYAEG 510 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + G +++ DVQ+ G+ VH V+ G + S ID + RR + Sbjct: 511 GGQLADQGRIKLDSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAI 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + HSATHL H AL LG +Q GS +P RFD + + L +E +N+++ Sbjct: 571 ARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGAPSAVPGSVLTDVEQRINEVL 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 ++ L V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T Sbjct: 631 SRELDVQAEVMSLDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTA 685 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 ++ L+ ++ ESSI +G+RRIEA+ G A + L + + L +K GR EE+ Sbjct: 686 QLGLVKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEEL 738 Query: 764 WEEYRKLQLIHAKRK-LQLNVEDLSCHKI-----------ADVNFMSHIISEVD----SK 807 E K+ + AK K + +E K+ D++ ++ + V+ + Sbjct: 739 PE---KISGMLAKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIHGVALVSGRVEDGTSAD 795 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLG 864 +L+ ++ ++ +I +V + L V+ + R A DL R +AK LG Sbjct: 796 DLRRLVLDVRGRIPGDRPAVVALFTVANGRPLTVIATNEAGRERGLRAGDLVRTAAKTLG 855 Query: 865 G---GGGGGRPHM 874 G G G RP + Sbjct: 856 GLLVPGSGRRPGL 868 >gi|322806901|emb|CBZ04471.1| alanyl-tRNA synthetase [Clostridium botulinum H04402 065] Length = 879 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 339/916 (37%), Positives = 527/916 (57%), Gaps = 68/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L + Sbjct: 66 CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+G Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177 Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G +SEE ++ +E WNLVF QF++ + L +IDTGMGLERMAT++ Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295 Q +++D K ++ +++G Y+ + + ++ R+I DH+RS +F+I+DGILP+NE Sbjct: 237 QNVDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ Sbjct: 297 GRGYVLRRLLRRAARHGKTLGINNTFLHNLTNIVIENCYKNYPELEEKREYIKKIIKLEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T+D G+ +L+ + + + +IL+GD AFKLYDT+G P+++ ++IL G++ I Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415 Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 D FN+ ++EQR RAR+ + +G KI ++ T F GYD L Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFEGYDKLE---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V S V I++ E E G + +V TPFYAE GGQ+ Sbjct: 467 -------------------VKSKVTVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG D + ++ D +K G +H + G + E ++L ++ + R + NH+ Sbjct: 508 GDTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + Sbjct: 568 ATHILHAALIEVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKKVEKVVNKEIMKANA 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T++MN E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + Sbjct: 628 VNTKVMNIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766 IVSE+ + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + Sbjct: 683 KIVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ ++ K KL ED + I + V S + ++D L+ + D ++ +QSG Sbjct: 743 EKEKEIEALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881 +++L G + + K + + T+D + + V ++ +V + GGGGGGRP MAQ+GG + Sbjct: 803 VVVL-GSNYKGKVLFIAMATKDTVAK--GVHCGKIIKEVAAIAGGGGGGRPDMAQAGGKD 859 Query: 882 GNKADQAIAGVASFLK 897 NK + AI V + ++ Sbjct: 860 PNKLEDAIKTVETVVE 875 >gi|309810794|ref|ZP_07704600.1| alanine--tRNA ligase [Dermacoccus sp. Ellin185] gi|308435274|gb|EFP59100.1| alanine--tRNA ligase [Dermacoccus sp. Ellin185] Length = 904 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 347/935 (37%), Positives = 513/935 (54%), Gaps = 89/935 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L+FF+ GH ++PS+ LI +DP L+F N+GMVPFK F GQ P + T+ Sbjct: 3 TAEIRRRWLQFFEGKGHTVVPSAPLI-YDDPNLLFVNAGMVPFKPYFLGQATPTFTRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKCVR G D++ VG+T+RH TFF+M GNFSFG YFKE AI+ AW+LLT+ + Sbjct: 62 VQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKEDAIKFAWELLTRHQSQGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RL+ TV++ D+EA+ +WK + G+ A +I R NDN+WSM GP GPCSEIFFD Sbjct: 118 GLDADRLWPTVFESDDEAYAIWKDVIGVDAARITRRDANDNYWSMGVPGPGGPCSEIFFD 177 Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGL 230 +G + GG P E+ RY+EIWNLVFMQ+E + + LP+ +IDTGMGL Sbjct: 178 RGAEYGVEGG-PAVDED--RYMEIWNLVFMQYELSAVRSKADFDVAGELPRRNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280 ERMA+VLQ N Y+ID ++ + ++TG +Y N + V+ RV+ DH+R Sbjct: 235 ERMASVLQGVDNLYEIDEVYPVLDMAAEMTGKRYGANSGQSAASSHPDDVHLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 SS LI DG+ P NEGRGYVLRR++RRA+ RLLGY +P + HL+P M +YPEL Sbjct: 295 SSLMLIGDGVTPGNEGRGYVLRRMLRRAVRAMRLLGYADPALPHLVPISMERMSQSYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---------GKDEILNGDVAFKLY 391 I + +E+E F +TL G +LD ++ G +L GD AF L+ Sbjct: 355 KTDFARISQIAYAEEEAFRRTLVAGTTILDTAVAKAKQTTDQQAGGDKPVLTGDQAFSLH 414 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKE 450 DT+G P+D+ ++ +G++ +D F + ++EQR RA+A + +G + +W L+E Sbjct: 415 DTYGFPIDLTLEMAAEQGVS-VDEAGFCRLMDEQRQRAKADAKAKKAGHGDVAVWTQLRE 473 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 GAT+F+ Y+ L+ + V+ +V G VE+ GQ Sbjct: 474 A-GATEFLAYETLQ-----------------------AEASVRGLVANGSAVEQLEPGQS 509 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 +VV D+T FYAE+GGQ+ D G + RL++ DVQ+ +G+ H V G +R Sbjct: 510 GQVVLDRTSFYAESGGQIADEGIIVTPAGRLKVVDVQRPVKGLIAHTVEVLDGPVRVGEG 569 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +D + R HS TH++H AL +LG Q+GS P LR D + ++ Sbjct: 570 VHTQVDPEWRISACQAHSGTHVVHAALREVLGPSALQSGSYNKPGYLRLDFAWNSALSPE 629 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 IE+ N + ++LPV + M +A GA AL G Y+++VRV+ + GG S Sbjct: 630 TRSEIEEVSNLALRRDLPVAAQYMTLPEAKEWGAIALFGETYDEQVRVIEI----GGPWS 685 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LCGGTHV+ + +I L + ESS+ +G+RR+EA G A +L + + L S K Sbjct: 686 RELCGGTHVAHSSQIGALTLTGESSVGSGVRRLEAFVGIDAMRYLAKERALVADLTSMTK 745 Query: 751 VSQGNVVGRVEE----IWEEYRKL------QLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800 G + ++ E I + R+L Q+ A L +D + V F+ H Sbjct: 746 AQPGELKDKISEMLTRIKDAERELSRLKQQQMAAAAGSLVEQAKD-----VFGVRFIGHH 800 Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD---RFNAVDLAR 857 +D+ +++ L+ K+ +V + K +IV+ + R A DL + Sbjct: 801 DDAIDADAARAMATDLRAKLGDATPSVVAVGGVSKGRPVIVIATNAPAREWRVKAGDLVK 860 Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 ++A VL GGGGGG+P +AQ GG + +K AIA V Sbjct: 861 VAAGVL-GGGGGGKPDLAQGGGQDASKLGAAIAEV 894 >gi|255015752|ref|ZP_05287878.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_7] Length = 873 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 340/914 (37%), Positives = 503/914 (55%), Gaps = 70/914 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV+ D D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D+ G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + + +LNG AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI FN+A+++Q+ RAR ++ + +G W +LKE G +F+GYDL Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERAR-NAAAIETGD----WITLKE--GECKFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 C+ + + I Q+ +++ ++V DQTPFYAE Sbjct: 471 E------------CEAEILRY--------RQIKQKNKVL--------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D ++ + D K+ + VH +V + + I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINVKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V + I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------SSVELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGR 759 G I L ++ ESSI AG+RRIEA+T + A + Q + +L++L + + + Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMPNLAQAMKKS 733 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +EE E ++++ ++ ++L E ++ ++ + + + ++ +K+V ++ + Sbjct: 734 IEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKAE 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + GI + K ++++++++DL+ +A + + +AK + GGGGG+PH A +G Sbjct: 794 TTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHI-QGGGGGQPHFATAG 852 Query: 879 GPNGNKADQAIAGV 892 G N A+ V Sbjct: 853 GKNMEGLSIAVGAV 866 >gi|148380519|ref|YP_001255060.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502] gi|153932600|ref|YP_001384806.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397] gi|153937856|ref|YP_001388276.1| alanyl-tRNA synthetase [Clostridium botulinum A str. Hall] gi|205830027|sp|A7FWJ5|SYA_CLOB1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830031|sp|A5I4Z5|SYA_CLOBH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148290003|emb|CAL84122.1| putative alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 3502] gi|152928644|gb|ABS34144.1| alanyl-tRNA synthetase [Clostridium botulinum A str. ATCC 19397] gi|152933770|gb|ABS39269.1| alanine--tRNA ligase [Clostridium botulinum A str. Hall] Length = 879 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 339/916 (37%), Positives = 527/916 (57%), Gaps = 68/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L + Sbjct: 66 CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+G Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDMDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177 Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G +SEE ++ +E WNLVF QF++ + L +IDTGMGLERMAT++ Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295 Q +++D K ++ +++G Y+ + + ++ R+I DH+RS +F+I+DGILP+NE Sbjct: 237 QNVDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ Sbjct: 297 GRGYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T+D G+ +L+ + + + +IL+GD AFKLYDT+G P+++ ++IL G++ I Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415 Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 D FN+ ++EQR RAR+ + +G KI ++ T F GYD L Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFEGYDKLE---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V S V I++ E E G + +V TPFYAE GGQ+ Sbjct: 467 -------------------VKSKVAVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG D + ++ D +K G +H + G + E ++L ++ + R + NH+ Sbjct: 508 GDTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T++MN E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + Sbjct: 628 VNTKVMNIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGIF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766 IVSE+ + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + Sbjct: 683 KIVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742 Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ ++ K KL ED + +I V S + ++D L+ + D ++ +QSG Sbjct: 743 EKEKEIEALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881 +++L G + + K + + T+D + + V ++ +V + GGGGGGRP MAQ+GG + Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKD 859 Query: 882 GNKADQAIAGVASFLK 897 NK + AI V + ++ Sbjct: 860 PNKLEDAIKTVETVVE 875 >gi|75906451|ref|YP_320747.1| alanyl-tRNA synthetase [Anabaena variabilis ATCC 29413] gi|123745317|sp|Q3MGN4|SYA_ANAVT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|75700176|gb|ABA19852.1| alanyl-tRNA synthetase [Anabaena variabilis ATCC 29413] Length = 880 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 352/911 (38%), Positives = 525/911 (57%), Gaps = 63/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IRT FL+F+ + GH++L S+SL+P DPT++ T +GM+PFK IF GQ P ++ TT Sbjct: 11 NEIRTRFLDFYAQRGHQILASASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPEFKRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RH TFFEMLGNFSFG YFKE+AI W++ T+ F L + R Sbjct: 70 QKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPKER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V++ED+EA+ +W+ G++ +I R+ +DNFW TGPCGPCSEI++D Sbjct: 126 LVVSVFEEDDEAYVIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYD-FHPER 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + L +IDTGMGLER+ +LQ+ NNY Sbjct: 185 GDENIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQQVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + ++ G+ Y ++ V+ +VI DH+RS +IAD I +N GRGYVL Sbjct: 245 ETDLIFPIIETAAKIAGIDYHSSDETTKVSLKVIGDHVRSVVHMIADEIRASNVGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + + SAYP + + + +I+ L E+ F KT Sbjct: 305 RRLIRRVVRHGRLIGISGEFINQVAERAIALSESAYPNVRKRETVIKAELEREEANFLKT 364 Query: 362 LDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRG LL+ ++ + K I++G+ AF LYDT+G PL++ Q+I L +D FN Sbjct: 365 LDRGEKLLEEIIQQVKKQGQTIISGESAFTLYDTYGFPLELTQEIAEENNLT-VDEDDFN 423 Query: 420 QALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 +++Q RA+A ++ L T + L E AT+FIGY + Sbjct: 424 VEMQKQVERAKAAHETIDL---TVQGSLDKLAEHIHATEFIGY-----------SQATAT 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 K + L +GV + EEA +G +V++V D+TPFYAE+GGQ+GD G GD Sbjct: 470 AKVEVLLVDGV------------VQEEAEAGTEVQIVLDKTPFYAESGGQIGDRGYISGD 517 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 GI +Q+ DV+K+++ FVH +ERG LR S+ ID RR+ NH+ATHLL AL Sbjct: 518 GIVVQVEDVKKESD-FFVHFGRIERGTLRVGDSVTAQIDRAGRRRAQANHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 TI+ +SQ GS ++ D LRFD + +T+ E++ +E+ +N IA+ ++ Sbjct: 577 KTIVDGGISQAGSLVSFDRLRFDFNSPRGLTAEEIQQVEEQINTWIAEAHSAKIEVLPLA 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY D VRV+ GV S LCGGTHVS+T EI + I+SE+ + Sbjct: 637 EAKARGAVAMFGEKYGDEVRVIDFP----GV-SMELCGGTHVSNTAEIGVFKIISEAGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--------- 768 +G+RRIEA++G +L +D+ +K L+ KV + R+ + E R Sbjct: 692 SGVRRIEAVSGLAVLDYLNVRDKVVKDLSDRFKVKPEELPERITTLQNELRTTEKQLETL 751 Query: 769 KLQLIHAKRKLQLNVED-LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K QL AK L D L HKI + + VD + LKS + L +KI +G ++L Sbjct: 752 KGQLAIAKSDSLLQTADTLGDHKI-----IVAQLEGVDPESLKSAAERLLQKIGNGAVVL 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + K S++ + ++ + A AK+ GGGGGGRP++AQ+GG + +K Sbjct: 807 GSVPEADKVSLVAAFSPEVNKKGLQAGKFIGAIAKIC-GGGGGGRPNLAQAGGRDASKLP 865 Query: 887 QAIAGVASFLK 897 A+ S LK Sbjct: 866 TALEQAQSELK 876 >gi|205830242|sp|Q30PA9|SYA_SULDN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 849 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 331/843 (39%), Positives = 476/843 (56%), Gaps = 73/843 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL FF+ H+ + S+ L+P +D TL+F N+GMVPFK+IFTG+ P + Q Sbjct: 3 IREEFLRFFESKNHDRVESAPLVP-DDATLLFNNAGMVPFKSIFTGEVPSPANPRAVSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T + +L Sbjct: 62 TCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITGVLKFPKEKL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 ++TV++ D+EA LW + +S D+I+R+ DNFW M +TGPCGPCSEIFFDQG E Sbjct: 122 WVTVHESDDEAEALW--LRHVSIDRIMRLGDKDNFWQMGDTGPCGPCSEIFFDQGAEKFS 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + ++NY Sbjct: 180 GPEDYMGGDGDRFLEIWNLVFMQYERSSDGTLTSLPKPSIDTGMGLERVVAISEGVSSNY 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 LF +I+ E + +Y ++RVI DH+R+S FL+A G+ +NEGRGYVLRRI Sbjct: 240 SSSLFMPIIKKVETLIEKEYVYATGASYRVIADHIRTSLFLLAQGVNFSNEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG++EP M L+ + MG Y L Q ++E + E+ RF KT+ Sbjct: 300 LRRAVRHGYLLGFSEPFMFKLVDTVVEIMGGEYDYLAQKSHSVKEQIELEEARFFKTIAS 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ L + L H KD I +G VAFKLYDT G PLD+ +D+L + L +D F + ++E Sbjct: 360 GIELFNAEL-HNTKD-IFSGSVAFKLYDTFGFPLDLTEDMLREKNLK-LDSAKFEELMQE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 QRSRA+A G G + L EK+ F+GY+ K+ +VL Sbjct: 417 QRSRAKAAWKGSGDEAVHGDFKELLEKFSENSFVGYES------TKQKSRVL-------- 462 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 +++ + + V+G V D TPFYA++GGQ GD G G ++ Sbjct: 463 -----ALLDESYHHADKLSAGVNGW---VFLDTTPFYAQSGGQCGDIGELNGFA---KVL 511 Query: 545 DVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D KK G+ + E+ + + E+ V+ I +R +++ +HSATHLLH L +LG Sbjct: 512 DT-KKFFGLNLSQISTEKELKVGDEVEAVVDI---SRGEITKHHSATHLLHAVLFDVLGD 567 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 H+SQ GS + LRFD +H K I++ EL IE VN I + + T +M+ ++A SG Sbjct: 568 HISQAGSLVEASRLRFDFSHPKAISNEELAEIERRVNYEIMRGIRANTEVMSIDEAKKSG 627 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A A G KY D VRVVS G S CGG HV ++ I I ES + AG+RRI Sbjct: 628 AKAQFGEKYGDEVRVVSF-----GDASIEFCGGVHVENSANIGSFIITKESGVSAGVRRI 682 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G A ++ Q E L+ E+ E + L ++ +L+ N+ Sbjct: 683 EAVCGNAAFNYFSEQRELLR------------------EVEHEVKNLDILAGVARLKSNI 724 Query: 784 EDL--------SC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 +L SC KI +N +S ++ E+ S ++K +D L+ + +S +L + Sbjct: 725 VELKKELHDAESCIKTDIKIQSINGISVVVDELTSGDIKEKIDELKNQHESLCAILFQVK 784 Query: 832 KEK 834 +K Sbjct: 785 DDK 787 >gi|168180547|ref|ZP_02615211.1| alanyl-tRNA synthetase [Clostridium botulinum NCTC 2916] gi|182668624|gb|EDT80603.1| alanyl-tRNA synthetase [Clostridium botulinum NCTC 2916] Length = 879 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 339/916 (37%), Positives = 527/916 (57%), Gaps = 68/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L + Sbjct: 66 CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+G Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177 Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G +SEE ++ +E WNLVF QF++ + L +IDTGMGLERMAT++ Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295 Q +++D K ++ +++G Y+ + + ++ R+I DH+RS +F+I+DGILP+NE Sbjct: 237 QNVDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ Sbjct: 297 GRGYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T+D G+ +L+ + + + +IL+GD AFKLYDT+G P+++ ++IL G++ I Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415 Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 D FN+ ++EQR RAR+ + +G KI ++ T F GYD L Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFKGYDKLE---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V S V I++ E E G + +V TPFYAE GGQ+ Sbjct: 467 -------------------VKSKVAVIIKDEEFKNEMEKGNEGVIVTYNTPFYAEMGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG D + ++ D +K G +H + G + E ++L ++ + R + NH+ Sbjct: 508 GDTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T++MN E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + Sbjct: 628 VNTKVMNIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGIF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766 IVSE+ + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + Sbjct: 683 KIVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742 Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ ++ K KL ED + +I V S + ++D L+ + D ++ +QSG Sbjct: 743 EKEKEIEALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881 +++L G + + K + + T+D + + V ++ +V + GGGGGGRP MAQ+GG + Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKD 859 Query: 882 GNKADQAIAGVASFLK 897 NK + AI V + ++ Sbjct: 860 PNKLEDAIKTVETVVE 875 >gi|78778092|ref|YP_394407.1| alanyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251] gi|78498632|gb|ABB45172.1| alanyl-tRNA synthetase [Sulfurimonas denitrificans DSM 1251] Length = 851 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 331/843 (39%), Positives = 476/843 (56%), Gaps = 73/843 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL FF+ H+ + S+ L+P +D TL+F N+GMVPFK+IFTG+ P + Q Sbjct: 5 IREEFLRFFESKNHDRVESAPLVP-DDATLLFNNAGMVPFKSIFTGEVPSPANPRAVSCQ 63 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFKE AI AW+ +T + +L Sbjct: 64 TCIRAGGKHNDLENVGYTARHHTFFEMLGNFSFGNYFKEEAIDYAWEFITGVLKFPKEKL 123 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 ++TV++ D+EA LW + +S D+I+R+ DNFW M +TGPCGPCSEIFFDQG E Sbjct: 124 WVTVHESDDEAEALW--LRHVSIDRIMRLGDKDNFWQMGDTGPCGPCSEIFFDQGAEKFS 181 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ + + ++NY Sbjct: 182 GPEDYMGGDGDRFLEIWNLVFMQYERSSDGTLTSLPKPSIDTGMGLERVVAISEGVSSNY 241 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 LF +I+ E + +Y ++RVI DH+R+S FL+A G+ +NEGRGYVLRRI Sbjct: 242 SSSLFMPIIKKVETLIEKEYVYATGASYRVIADHIRTSLFLLAQGVNFSNEGRGYVLRRI 301 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG++EP M L+ + MG Y L Q ++E + E+ RF KT+ Sbjct: 302 LRRAVRHGYLLGFSEPFMFKLVDTVVEIMGGEYDYLAQKSHSVKEQIELEEARFFKTIAS 361 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ L + L H KD I +G VAFKLYDT G PLD+ +D+L + L +D F + ++E Sbjct: 362 GIELFNAEL-HNTKD-IFSGSVAFKLYDTFGFPLDLTEDMLREKNLK-LDSAKFEELMQE 418 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 QRSRA+A G G + L EK+ F+GY+ K+ +VL Sbjct: 419 QRSRAKAAWKGSGDEAVHGDFKELLEKFSENSFVGYES------TKQKSRVL-------- 464 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 +++ + + V+G V D TPFYA++GGQ GD G G ++ Sbjct: 465 -----ALLDESYHHADKLSAGVNGW---VFLDTTPFYAQSGGQCGDIGELNGFA---KVL 513 Query: 545 DVQKKAEGIFVHHAIVERGI-LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D KK G+ + E+ + + E+ V+ I +R +++ +HSATHLLH L +LG Sbjct: 514 DT-KKFFGLNLSQISTEKELKVGDEVEAVVDI---SRGEITKHHSATHLLHAVLFDVLGD 569 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 H+SQ GS + LRFD +H K I++ EL IE VN I + + T +M+ ++A SG Sbjct: 570 HISQAGSLVEASRLRFDFSHPKAISNEELAEIERRVNYEIMRGIRANTEVMSIDEAKKSG 629 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A A G KY D VRVVS G S CGG HV ++ I I ES + AG+RRI Sbjct: 630 AKAQFGEKYGDEVRVVSF-----GDASIEFCGGVHVENSANIGSFIITKESGVSAGVRRI 684 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G A ++ Q E L+ E+ E + L ++ +L+ N+ Sbjct: 685 EAVCGNAAFNYFSEQRELLR------------------EVEHEVKNLDILAGVARLKSNI 726 Query: 784 EDL--------SC----HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 +L SC KI +N +S ++ E+ S ++K +D L+ + +S +L + Sbjct: 727 VELKKELHDAESCIKTDIKIQSINGISVVVDELTSGDIKEKIDELKNQHESLCAILFQVK 786 Query: 832 KEK 834 +K Sbjct: 787 DDK 789 >gi|307152653|ref|YP_003888037.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7822] gi|306982881|gb|ADN14762.1| alanyl-tRNA synthetase [Cyanothece sp. PCC 7822] Length = 881 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 350/902 (38%), Positives = 524/902 (58%), Gaps = 56/902 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ FL+F+ K H++LPS+SL+P DPT++ T +GM+PFK IF GQ+K Y TT Sbjct: 11 SEIRSYFLDFYAKKEHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQKSDYPRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK F L R Sbjct: 70 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVFGLPANR 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 + ++V+ ED+EAF+LW+ G+ +I R+ DNFW TGPCGPCSE+++D + Sbjct: 126 IIVSVFQEDDEAFELWRDKIGIPPHRIKRMGEEDNFWKSGPTGPCGPCSELYYDFHPEL- 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ NNY Sbjct: 185 GDKNIDLEDDSRFIEFYNLVFMQYNRDAQGNLTPLQNKNIDTGMGLERMAQILQKVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +IQ++ ++ G+ Y + ++ +VI DH+R+ +IADGI +N GRGY+L Sbjct: 245 ETDLIFPIIQSAAEIAGIDYKKADEKTKISLKVIGDHVRAVVHMIADGITASNVGRGYIL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + + YP + + I+ L+ E+ F T Sbjct: 305 RRLIRRVVRHGRLIGIDGAFINKVAEVAISLSEDIYPIVRVRETPIKAELQKEEAAFLVT 364 Query: 362 LDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+RG LL +++ + K + ++G AF LYDT+G PL++ Q+I +GL +D FN Sbjct: 365 LERGEKLLSEIIADVKRRKKKQISGVDAFTLYDTYGFPLELTQEIAEEQGLT-VDEDQFN 423 Query: 420 QALEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + +++Q+ R++A ++ L G+ +K L E TQF+GY +D + Sbjct: 424 EEMKKQQERSKAAHETIDLTVQGSLDK----LAEHIHPTQFLGY----------QDAASV 469 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 Q ++ ++ G+ V+ A +G +V++V +QTPFYAE+GGQ+GD G G Sbjct: 470 AQ-------------IEVVLVDGKTVDSAEAGTEVQIVLNQTPFYAESGGQIGDKGYITG 516 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + +++ DVQK++ FVH VERG + ++ TID RR++ +H+ATHLL A Sbjct: 517 ENLVIRVEDVQKES-AFFVHFGRVERGTVSVGDTITATIDRACRRRVQAHHTATHLLQAA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L I+ VSQ GS +T D LRFD + +T EL+ IED +N IA+ T IM Sbjct: 576 LKKIVDESVSQAGSLVTFDRLRFDFNCPRAVTPQELQQIEDLINSWIAEAHDAHTYIMAL 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A A GA A+ G KY VRV+ V GV S LCGGTHV +T EI L I+SES I Sbjct: 636 EEAKAKGAVAMFGEKYGAEVRVLDVP----GV-SMELCGGTHVKNTAEIGLFKIMSESGI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEA+ G +L +D +K L KV + R+ + E + QL Sbjct: 691 ASGVRRIEAVAGPAVLEYLNERDTVVKDLCDRFKVKPNEISDRITALQSELKATLKQLEA 750 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGIS 831 A+++L + D V +++E VD L + + LQ+K+ G ++L IS Sbjct: 751 AQQELAIAKSDQLLANADAVGEFKVLVAEMEGVDPNGLMTAAERLQQKLGEGAVILGAIS 810 Query: 832 KEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K S++ + ++ + A AK+ GGGGGGRP++AQ+GG + +K A+ Sbjct: 811 AEGKVSLVAAFSPKVVKEKKLQAGKFIGEVAKIC-GGGGGGRPNLAQAGGRDPSKLKDAL 869 Query: 890 AG 891 + Sbjct: 870 SA 871 >gi|313895726|ref|ZP_07829282.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975852|gb|EFR41311.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 137 str. F0430] Length = 875 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 341/918 (37%), Positives = 518/918 (56%), Gaps = 77/918 (8%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R T+L+FF +K H L S SLIP +DPTL+ +GM P K FTG+ KP +TT Sbjct: 7 NELRETYLQFFAEKKDHLRLASYSLIPEDDPTLLLIGAGMAPLKPFFTGKMKPPRPRITT 66 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVR G D++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ LT+ +L + Sbjct: 67 SQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIELPKE 122 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++++Y +D EA +W + GL D I+ + NDNFW + GPCGP SEI+ D GE Sbjct: 123 KLWVSIYPDDNEARAIWLEQPGLLPDHIVPL--NDNFWEIG-PGPCGPDSEIYIDLGEER 179 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R++EIWNLVF Q+++ + E +L +IDTG GLER+A+V+Q K Sbjct: 180 GCGEPTCGVGCDCDRFLEIWNLVFTQYDRTEEGEYNLLAHKNIDTGCGLERLASVVQNKE 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N++ DL +I + +++G+ Y + ++ +VI DH RS S +I DGILP+NEGRGY Sbjct: 240 TNFETDLLYPIIAYASKISGVAYGSDKRKDISLKVIADHARSISVMIMDGILPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDER 357 VLRR +RRA+ + R+LG T+P + + A+ A + EL + I+ +R E+ER Sbjct: 300 VLRRTLRRAIRHGRMLGITDPFLDGAVDAVVEIFRGAPDFSELTAKQEYIKRVIRVEEER 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL +G+ LL+G + L ++ +L GD+ FKLYDT+G P ++ ++IL G+ +D Sbjct: 360 FASTLAQGMELLNGEIGRLKEENKVVLPGDIGFKLYDTYGFPRELTEEILHEHGIT-LDG 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + F++ +E QRSRAR S E ++ + I LR KE Sbjct: 419 VEFDKEMEAQRSRAR-------SARAENQVVAVPD----LSNIDTSALRSDSTAKE---- 463 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++V AI + GEIV+ G+ ++ D+TPFYAE GGQ+GD G Sbjct: 464 --------------AVVAAIWRDGEIVDSLRDGESAGIILDRTPFYAEGGGQVGDEGVLR 509 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + I++ +K +G H A VE G + + +T++ + + + NH+ATHLL Sbjct: 510 SDLGYISISNAKKLPDGTIYHIAYVEEGEIHRGDRVDITVNRERKLSSARNHTATHLLQA 569 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS +TPD LRFD T+ +P+T +++ IE+ VN I +++ + +M Sbjct: 570 ALQRVVGAHVKQAGSLVTPDRLRFDFTNFEPVTEQQIRDIEELVNAEILRSVDLDISMMP 629 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 DA GA AL G KY D VRVVSV S LCGG+HV +TG+I L I+ ES Sbjct: 630 IADAKNMGAMALFGEKYGDIVRVVSVPG-----FSIELCGGSHVGNTGQIGLFKIIGESG 684 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----- 770 + AG+RRIEAITG+ A S+ ++ ++ LK ++ ++++ +E + + Sbjct: 685 VAAGVRRIEAITGKAAFSYAATLYHTVQEISEKLKTRPEDLSSQIDKFLDERKAMQEQLR 744 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDS-KELKSVMDALQKKIQSGIIM 826 Q + K ++ +I H++ + VDS EL+++ D +K+ GI++ Sbjct: 745 QFAEFRDKADAQKLLMAVREIGAF----HVVVGKANVDSMDELRTIADLACEKLDHGIVI 800 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG------GGGRPHMAQSGGP 880 L + +K V +VV D NAV + +++ GGGRP MAQ+GG Sbjct: 801 LAAVIDDK---VSLVVKADK----NAVSAGAHAGQIIKEAAKEVGGGGGGRPDMAQAGGK 853 Query: 881 NGNKADQAIAGVASFLKK 898 QA S +++ Sbjct: 854 TPENIPQAFDAAISVIQR 871 >gi|198276957|ref|ZP_03209488.1| hypothetical protein BACPLE_03162 [Bacteroides plebeius DSM 17135] gi|198270482|gb|EDY94752.1| hypothetical protein BACPLE_03162 [Bacteroides plebeius DSM 17135] Length = 872 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 339/923 (36%), Positives = 504/923 (54%), Gaps = 88/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F++FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VT QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI A++ L L Sbjct: 61 VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAYEYLVSILKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D+EA W + D II +DNFW M +TGPCGPC Sbjct: 121 DPKDLYVTVFEGSPSEGISRDDEAASYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFDQGEC-IPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D +PG +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDSRSAEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGTLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ ++G KY + V RV+ DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKVIGDLSGKKYGDDEKTDVAMRVVADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ YA LG + M L+P L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVPVLIENMGGAYPELKAQQA 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LL+ ++ GK EI D AF LYDT G P D+ + Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLEKTMNETKAAGKTEISGVD-AFTLYDTFGFPFDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL GL D+ F +++Q+ RAR ++ + +G W +LKE G T F+GY Sbjct: 418 LILRENGLTA-DVKGFEAEMQKQKERAR-NAAAVETGD----WVTLKE--GETTFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V +TPF Sbjct: 468 --------------------DYTEYETSILRYRQIKQKNQTL--------YQIVLSETPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + + I D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIDIIDT-KKENNLPIH--IAKKLPEHLEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +++ +E VN Sbjct: 557 AACAANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTPEQIREVEHLVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I +N+P+ R + E A GA AL G KY D VRVV S CGGTHV Sbjct: 617 AKIRENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS---QGNV 756 S+TG+I ++ I+SESS+ AG+RRIEA+TG + + + L + + + + Sbjct: 671 SATGKIGMVKIISESSVAAGVRRIEAVTGAKVEEMFDTVQDTINDLKALFNNAPDLKAAI 730 Query: 757 VGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 +EE EE+ K + K KL ++++ K+ + + + +K Sbjct: 731 SKYIEENAGLKKQMEEFMKEKEAAVKNKLIEGAKEINGVKVIKA------VLPMPADAVK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 ++ L+ + + +++G E K + + ++ED + NA L R +AK++ GGGG Sbjct: 785 NIAFQLKGQFTENLFVVIGSVFENKPLLTVTMSEDQVKAGLNAGQLVREAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + + A+ V Sbjct: 844 GQPHFATAGGKNPDGLNTAVDKV 866 >gi|194333146|ref|YP_002015006.1| alanyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271] gi|194310964|gb|ACF45359.1| alanyl-tRNA synthetase [Prosthecochloris aestuarii DSM 271] Length = 885 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 348/908 (38%), Positives = 505/908 (55%), Gaps = 73/908 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N IR +FL++F GH+++ S+ +IP DPTL+FTN+GM FK++F + Y Sbjct: 2 NSRDIRQSFLDYFSAKGHKIVRSAPVIPAEDPTLLFTNAGMNQFKDVFLDKGSRPYSRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K+ AI AW+LLT + L + Sbjct: 62 DTQKCMRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKKEAIAWAWELLTDVWKLPK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY TVY +DEE+F +W++ + + D I++ DNFW M ETGPCGPCSEI D + Sbjct: 122 DRLYATVYKDDEESFLIWQQETDIDPDHIMKFGDKDNFWEMGETGPCGPCSEIHIDLTDD 181 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + R IE+WNLVF+Q+ + LPK +DTGMG ER+ VLQ K + Sbjct: 182 -SSGAPLVNAGDYRVIELWNLVFIQYNRMADGSLDPLPKKHVDTGMGFERVTAVLQGKRS 240 Query: 243 NYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NYD D+F L +A +VTG+ Y +G + RVI DH R+ +F I DG +P NEGRG Sbjct: 241 NYDTDIFYPLFEAITEVTGVTYNASLDGEQDIAMRVIADHARALTFAITDGAMPGNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ YAR L EP++ L+ + MG +PEL Q + +++ ++SE+E F Sbjct: 301 YVLRRILRRALRYARKLDSREPMIYKLVGVIARTMGDVFPELQQQQETVQKIVKSEEESF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 TLDRG+ + + + D + + G+ AF+LYDT+G P+D+ + + GL ID Sbjct: 361 LSTLDRGMEIFGDITKAVKADNGKEIKGEDAFRLYDTYGFPIDLTRLMAAEVGL-DIDEK 419 Query: 417 SFNQALEEQRSRA---RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F+ ++EQ++RA R S T E +W E T F+GY+ L Sbjct: 420 GFDVCMQEQKTRARMDRKEKQLAASETGEWLWL---ETPSPTVFVGYETLESD------- 469 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 IV V G ++++V D+TPFYAE+GGQ GD G Sbjct: 470 -------------------------ARIVGVKVVGDQLQLVLDRTPFYAESGGQTGDRGV 504 Query: 534 AIGDGIRLQITDVQKKAE-GIFVHHAIVERGI----------LRTEMSLVLTIDYQNRRQ 582 +G +++ D QK + + + + +R +++ +++D Q+R Sbjct: 505 IEAEGYSVEVVDTQKDGDMTVHIAATVQDRHTGEQIDPAAIDFSASVAVQVSVDRQSRLA 564 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NH+ATHLLH AL +LG HV Q GS + PD LRFD +H + +++ EL+ +E VN+ Sbjct: 565 TERNHTATHLLHAALRKVLGKHVQQKGSLVGPDRLRFDFSHFEKVSARELQLVEAEVNER 624 Query: 643 IAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +V + E+A+ GA A G KY D VRVV V GV S LCGGTHVS+ Sbjct: 625 IREAGELVKHADIPYEEALEKGALAFFGDKYADLVRVVEVP----GV-SIELCGGTHVSN 679 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RV 760 G I L IVSESS+ AGIRRIEA+TG+ A L + ++L+ + LK V +V Sbjct: 680 VGRIGLFKIVSESSVAAGIRRIEALTGKAAEELLWNEYQELQQIRQLLKAHPDEGVAVKV 739 Query: 761 EEIWEEYRKL----QLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + EE + L Q + L ++ L S +I + + + + +LKS+ Sbjct: 740 QALLEEKKTLGKQVQDMQLSVLLDKALQQLDSSEEINGCRIFTMHVPDAGADDLKSLGQY 799 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPH 873 L +I G +L S E K S++ + + NA DL + +A+ + GGGGG+P Sbjct: 800 LHDRIGCGAGLLASES-EGKVSLVAFAGPQAVRQCGVNAGDLVKKAAQEV-QGGGGGKPG 857 Query: 874 MAQSGGPN 881 A +GG N Sbjct: 858 FATAGGRN 865 >gi|302533385|ref|ZP_07285727.1| alanyl-tRNA synthetase [Streptomyces sp. C] gi|302442280|gb|EFL14096.1| alanyl-tRNA synthetase [Streptomyces sp. C] Length = 889 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 345/927 (37%), Positives = 518/927 (55%), Gaps = 88/927 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ KP T+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVNAGMVPFKPYFLGETKPPAPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT + Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ +L+ITVY +D+EA +W+ + G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LEPEKLWITVYLDDDEAETIWRDVIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ + K++ IL P +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290 A +LQ N Y+ D + +++ + ++TG++Y +G++ V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYETDTLRVVMEKATELTGVRYGAAKGSD-VSMRVVADHMRTSVMLIGDGV 296 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P NEGRGYVLRRIMRRA+ RL+G T P++ L+ + MG YPELI + IE Sbjct: 297 TPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVQDLIDVVIDTMGQQYPELITDRKRIETV 356 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E+ F K + G +LD ++ +L+GD AF L+DT G P+D+ ++ + Sbjct: 357 ALAEEAAFLKAVKGGTNILDTAVTETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAAEQ 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSK 467 GL+ +D F + ++EQR RA+A + +G + + + + GAT+F GY Sbjct: 417 GLS-VDEPGFRRLMQEQRDRAKADAKAKKTGHADMSAYREIADGSGATEFTGY------- 468 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 TN S + ++ G A G +VEVV D+TPFYAE GGQ Sbjct: 469 ----------------ATNQGESTIVGLLVNGVSAPAASEGDEVEVVLDRTPFYAEGGGQ 512 Query: 528 LGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 L D G + G +++ DVQ+ G+ VH V+ G + S ID + RR ++ Sbjct: 513 LADQGRIKLDTGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVKRRRAIARA 572 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL H AL LG +Q GS +P RFD + L +E +ND++++ Sbjct: 573 HSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINDVLSRE 632 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 L V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ Sbjct: 633 LDVTAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTSQLG 687 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI--- 763 L+ ++ ESSI +G+RR+EA+ G A + L + + L +K GR EE+ Sbjct: 688 LVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEK 740 Query: 764 --------------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809 E++R +++ A L N +D+ + + + + +L Sbjct: 741 IASMLGKLKDAEKEIEKFRAEKVLQAAAGLASNAQDIRGVAL----VVGQVPDGTGADDL 796 Query: 810 KSVMDALQKKIQ---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 + ++ ++ +IQ ++ L ++ ++ +V I E +R A DL R +AK L G Sbjct: 797 RKLVLDVRGRIQGDRPAVVALFTVANDRPLTV-IATNEAARERGLKAGDLVRTAAKTL-G 854 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+P +AQ GG N +AIA V Sbjct: 855 GGGGGKPDVAQGGGQNPGAVPEAIAAV 881 >gi|126695385|ref|YP_001090271.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301] gi|205830177|sp|A3PA95|SYA_PROM0 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126542428|gb|ABO16670.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9301] Length = 886 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 334/917 (36%), Positives = 522/917 (56%), Gaps = 78/917 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+F+ + H+++PS+SLIP +DPT+M T +GM+PFK +F G +E+P +A T+ Q Sbjct: 15 IRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVG T RHHTFFEMLGNFSFG YFK AIQ AW+L+T + L + Sbjct: 73 KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSVENI 128 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++V+ EDEE+ K+W G+ D+I+++ DNFWS +TGPCGPCSE+++D Sbjct: 129 IVSVFHEDEESAKIWIDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHP--EK 186 Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 GL E+G+R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+K NNY Sbjct: 187 GLQNIDLEDGDRFIEFYNLVFMQYNRDQNGKLTDLKFKNIDTGMGLERMAQILQKKQNNY 246 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +IQ ++ + Y + N ++ ++I DH R+ LI+DG+ +N GRGY+L Sbjct: 247 ETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVAASNLGRGYIL 306 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG T + H+ M + YP+L LI ++ E+ RF +T Sbjct: 307 RRLIRRMVRHGRLLGITNEFLPHIASVGINLMQNNYPDLKNNNDLILNEIKIEEIRFRET 366 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LLD ++S K +++G AF+LYDT+G PL++ +I ++ +D+ F + Sbjct: 367 LERGEKLLDELISSGQK--LISGFKAFELYDTYGFPLELTVEIAEENSIS-VDVKGFEEE 423 Query: 422 LEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + Q+ RA+A S + G+ E+ + + T F GY+ L Sbjct: 424 MNAQKERAKAASSNIDLTLEGSLEREI----DLFNKTVFNGYNSLLS------------- 466 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + +K I +V++A GQKV +V DQT FY E+GGQ+GD G Sbjct: 467 ----------EAEIKGIFLDSTLVKQASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSKD 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + + +V +K + +F+HH +++GIL + + NR + + NH+ATHLL AL Sbjct: 517 VEVLVDNVMRK-KNVFLHHGTIKKGILTIGQKVKTNVSSSNRAKAAANHTATHLLQSALK 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 I+ V Q GS + + LRFD S PI+ ++ IE VN I +N + + M++ + Sbjct: 576 LIVNESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHALEIKNMSKSE 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA A+ G KY+D VRVV+V GV S LCGGTHV +T E+ I+SE I A Sbjct: 636 ALEKGAVAMFGEKYDDEVRVVNVP----GV-SMELCGGTHVKTTSELGSFKIISEEGISA 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA++GQ A + ++ + L+ LK + + RV + E LI+ ++ Sbjct: 691 GVRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQSE-----LINKNKE 745 Query: 779 LQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDA---LQKKI-QSGIIML 827 +Q ++++ K + VN S +++++D + S+ A L + I++L Sbjct: 746 IQKMKDEIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVIL 805 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGPN 881 GI + +L VV+ L D +AV + + K++ GGGGG+P+ AQ+G + Sbjct: 806 GGIPNPENRKLLFVVS--LGD--DAVKIGLHAGKLINEIARICSGGGGGKPNFAQAGAKD 861 Query: 882 GNKADQAIAGVASFLKK 898 +K AI ++L+K Sbjct: 862 IDKLSDAIDYAKNYLQK 878 >gi|257892474|ref|ZP_05672127.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,408] gi|257828853|gb|EEV55460.1| alanyl-tRNA synthetase [Enterococcus faecium 1,231,408] Length = 819 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 342/864 (39%), Positives = 495/864 (57%), Gaps = 78/864 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FFQ GH + PS+SLIP NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMFLDFFQSKGHTIEPSASLIPVNDPTLLWINSGVATLKKYFDGSVVPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YFK AI AW+ LT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFKNEAIHWAWEFLTDPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY +D EA ++W + GL D II + DNFW + GPCGP +EIF Sbjct: 117 WMAFDPEKLYVTVYPKDTEAKRIWHEEVGLPLDHIIDV--EDNFWDIG-AGPCGPDTEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+GE P PG E ERY+EIWNLVF +F + LP +IDTGMG Sbjct: 174 YDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNHKPDNTFEPLPHKNIDTGMG 231 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLRSSSFLI 286 LERM +++Q+ + N++ DLF +I A E+++ +KY N + ++++VI DH+R+ SF I Sbjct: 232 LERMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPVTDISYKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYVLRR++RRA+ + + LG + + L+P + M S YPE++Q K Sbjct: 292 GDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVPVVGEIMVSYYPEVLQQKEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ +R+E+ERF +T++ GL +L+ V+ + + L G FKLYDT+G P+++ +++ Sbjct: 352 IEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGKDIFKLYDTYGFPVELTEEV 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 GL +D F + ++ QR RAR A S G + +K + ++FIGY Sbjct: 412 AEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSALLTDIKVE---SKFIGYTE- 466 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + D ++L ++ +GE + V+ + +++FDQTPFYAE Sbjct: 467 -----QESDSQLL------------------VIVKGESLLNEVAEGEAQMIFDQTPFYAE 503 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G + + I +TDVQK G F+H V + + + L ID R Sbjct: 504 MGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-KAPMSEGQTYHLLIDQSMRN 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH+ATHLLH AL +LG H +Q GS + P LRFD TH ITS EL +E VN+ Sbjct: 563 RIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFTHFGQITSDELAEMERIVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + A GA AL G KY VRVV++ G S LCGGTHV++ Sbjct: 623 KIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI-----GGWSIELCGGTHVAN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T I + IVSES I AG+RRIEA+T + A L ++++LK +A+ +K Q VV + Sbjct: 678 TENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQLKQVATIVKSPQLKEVVSKA 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-------NFMSHIISEV---DSKELK 810 E++ ++ R+LQ K QL L+ + DV N + I ++V D +L+ Sbjct: 738 EQLQQQVRELQ----KENEQL-ASKLANQQAGDVFKDPETINGKTIIAAQVKVKDMNQLR 792 Query: 811 SVMDALQKKIQSGIIMLVGISKEK 834 + D ++K S I++L KEK Sbjct: 793 QLADQWKQKNISDILVLQTNKKEK 816 >gi|150009141|ref|YP_001303884.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503] gi|298377115|ref|ZP_06987069.1| alanine--tRNA ligase [Bacteroides sp. 3_1_19] gi|205830169|sp|A6LEZ8|SYA_PARD8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149937565|gb|ABR44262.1| alanyl-tRNA synthetase [Parabacteroides distasonis ATCC 8503] gi|298266099|gb|EFI07758.1| alanine--tRNA ligase [Bacteroides sp. 3_1_19] Length = 873 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 339/914 (37%), Positives = 503/914 (55%), Gaps = 70/914 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKQFFASKEHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV+ D D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLDRDNEAAGYWEQY--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D+ G +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAAVSGADMVNKDHPQVIEIWNLVFMQFNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIAGMAGTTYGTDKQQDIAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKEAFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD + + +LNG AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKTVLNGVDAFTLYDTYGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ DI FN+A+++Q+ RAR ++ + +G W +LK+ G +F+GYDL Sbjct: 419 ILRENGMEA-DIEEFNKAMQKQKERAR-NAAAIETGD----WITLKD--GECKFVGYDLF 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 C+ + + I Q+ +++ ++V DQTPFYAE Sbjct: 471 E------------CEAEILRY--------RQIKQKNKVL--------YQIVLDQTPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GDTG I D ++ + D K+ + VH +V + + I+ + R Q Sbjct: 503 MGGQVGDTGWLIADDEKIDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINVKKRIQC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V + I Sbjct: 560 ECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEILVGEKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 N P+ R M +A A GA AL G KY D VRVV S LCGGTH+ +T Sbjct: 620 RANFPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------SSVELCGGTHIPAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGR 759 G I L ++ ESSI AG+RRIEA+T + A + Q + +L++L + + + Sbjct: 674 GMIGSLRVIGESSIAAGVRRIEAVTAEGAEQFVYAQQDLIRELRALMNHMPNLAQAMKKS 733 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 +EE E ++++ ++ ++L E ++ ++ + + + ++ +K+V ++ + Sbjct: 734 IEENAEMKKQIEDYIREKSMRLKEEIVAKASESNGIKVMQFVGKANADAMKNVAFQIKAE 793 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + GI + K ++++++++DL+ +A + + +AK + GGGGG+PH A +G Sbjct: 794 TTDSFVFVAGIIDDNKCTLMLMLSDDLVKEGLHAGKIVKEAAKHI-QGGGGGQPHFATAG 852 Query: 879 GPNGNKADQAIAGV 892 G N A+ V Sbjct: 853 GKNMEGLSIAVGAV 866 >gi|225389081|ref|ZP_03758805.1| hypothetical protein CLOSTASPAR_02827 [Clostridium asparagiforme DSM 15981] gi|225044859|gb|EEG55105.1| hypothetical protein CLOSTASPAR_02827 [Clostridium asparagiforme DSM 15981] Length = 887 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 321/839 (38%), Positives = 480/839 (57%), Gaps = 47/839 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 14 VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK+ AI+ W+ LT+ LD Sbjct: 74 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKDDAIRWTWEFLTEVVGLDPD 129 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY ED+EAF++W + G+ A++I + DNFW +GPCGPCSE+++D+GE Sbjct: 130 RLYPSVYLEDDEAFRIWNEKIGIPAERIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEKY 188 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G PG + + +RYIE+WN VF QF+ K L +IDTGMGLER+A V+Q Sbjct: 189 GCGKPGCTVGCDCDRYIEVWNNVFTQFDNDGKGHYTELEHKNIDTGMGLERLAVVVQGVD 248 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + + +D K L+ ++ +Y+ ++ V+ R++ DH++S +F+I+DGI+P+NEGRGY Sbjct: 249 SLFTVDTNKALLDRVCELAHTEYQKDHETDVSLRIVADHVKSCTFMISDGIMPSNEGRGY 308 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R LG M L + YPEL K +I + L E+++F Sbjct: 309 VLRRLLRRAARHGRKLGIEGQFMAGLAATVIELSKDGYPELEDNKAMIFKVLEQEEDKFN 368 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L+ ++ + + L G AFKLYDT+G PLD+ ++IL +G G+D Sbjct: 369 KTIDQGLSILNDRIADMQAKGENTLAGADAFKLYDTYGFPLDLTREILEEKGY-GVDEDG 427 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A++EQ+ +AR A G ++ S+ T+F+GY+ L Sbjct: 428 FAAAMKEQKDKARNARKTTNYMGADVTVYQSIDPAI-TTEFVGYNNLT------------ 474 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 S + + + EIVE GQ+ V+ +QTPFY GGQ GD G G Sbjct: 475 -----------AESKITVLTTEDEIVEALTDGQRGTVITEQTPFYGTMGGQQGDVGVITG 523 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++ D G H ++ G+L+ ++ L++ +NR NHSATHLL A Sbjct: 524 QNGEFKVEDTIHLQGGKVGHVGVMTHGMLQNGNTVTLSVCARNRALTCQNHSATHLLQKA 583 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q+GS + LRFD TH +T EL +E+ VN I LPV T++M Sbjct: 584 LRLVLGEHVKQSGSYVDAGRLRFDFTHFSAMTPEELGKVEELVNQEIRAGLPVETQVMTL 643 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A +GA AL G KY D VRVV + G S+ LCGGTHV++TG I I+SE+ I Sbjct: 644 DEAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVANTGSIASFKILSETGI 698 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+T + H +++L A K + + ++E + EE + L + K Sbjct: 699 AAGVRRIEALTSEGLMKHYEEVEKELHEAAKTAKTTPAGLSAKIEGLLEEIKALSAENEK 758 Query: 777 RKLQLNVEDLS--CHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 K +L + L +++ +VN ++ +++VD L+ + D L+ K+ G++++ + Sbjct: 759 LKSKLAKDSLGDVMNQVKEVNGVKVLASQVADVDMNGLRGLGDQLKDKLGEGVVLIASV 817 >gi|227529700|ref|ZP_03959749.1| alanine--tRNA ligase [Lactobacillus vaginalis ATCC 49540] gi|227350366|gb|EEJ40657.1| alanine--tRNA ligase [Lactobacillus vaginalis ATCC 49540] Length = 884 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 333/927 (35%), Positives = 526/927 (56%), Gaps = 85/927 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R +L+FF+++GH+++PS+SL+P NDPTL++ NSG+ K F G+ P +T Sbjct: 8 NSAQVRRMYLKFFEEHGHKIMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPENPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDDWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A+ W+++ G++ D +I DNFW + + GP GP +EIF+D+G Sbjct: 124 DPERLYITYYPKDHDAYNKWREV-GVAKDHLI--PDEDNFWDIGQ-GPSGPDTEIFYDRG 179 Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + P PG E ERY+EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 180 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGI 290 ++ + N++ DLF LI+ +E+ +G K G + + ++I DH+R+ +F I DG Sbjct: 238 VSIFENAPTNFETDLFMPLIKQTEKFSGSKKYGESKEDDIQFKIIADHIRTITFAIGDGA 297 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ I Sbjct: 298 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLENADYIASV 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++SE++RF TL+ GL LL+ V+++ KD ++G AFKLYDT+G P+++ ++ Sbjct: 358 IKSEEDRFSATLNGGLNLLNNVIANAKKDGSNEIDGRTAFKLYDTYGFPIELTKEYASDE 417 Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F A+ EQ++RAR A + G G +W K+ A++++GY Sbjct: 418 GLT-VDEDGFQAAMTEQQNRARNARDMDNGMGVQTDLWTDFKD---ASRYVGY------- 466 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526 DLT + ++ + G+ ++A G K +EV+FD TPFYAE GG Sbjct: 467 --------------TDLTVDNAKVI-GLAHDGKQADDAQPGDKNIEVIFDVTPFYAEMGG 511 Query: 527 QLGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTID 576 Q+ DTG I + G ++ ++ DVQ HA ++ + R E++ L +D Sbjct: 512 QVADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELNAPLKKGARYKLVVD 562 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 ++ NH+ATHLL AL +LG H Q GS + LRFD H +T+ +LK++E Sbjct: 563 RIRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAKDLKAVE 622 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + +PV T + + A GA AL KY D+VRVV + G +++ CGG Sbjct: 623 KMVNEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGG 677 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 HV +T E+ L IVSE + AG+RRIEA+T A + L +D+ L +A+ LKV+Q Sbjct: 678 DHVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFNFLQDRDDLLNKVATDLKVAQIKE 737 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELK 810 V +VE + + ++ Q A + ++ + + K A+ + ++ + +L+ Sbjct: 738 VPHQVEALQSDLKEAQKQSAALQAKIAAQQANNVFENVQKTANGSLIAAEVQVAGMGQLR 797 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGG 869 + D+ + K S +++L G + + KA++L+ V++D + D A DL ++ A + GGGG Sbjct: 798 QLADSWRAKSLSDVLVL-GTANDGKANLLVAVSDDKVKDGLRAGDLIKVIAPAI-NGGGG 855 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 GRP++AQ+GG A+ A +L Sbjct: 856 GRPNLAQAGGKKPEGIQDALKQAADYL 882 >gi|157693144|ref|YP_001487606.1| alanyl-tRNA synthetase [Bacillus pumilus SAFR-032] gi|205829985|sp|A8FFM9|SYA_BACP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157681902|gb|ABV63046.1| alanine--tRNA ligase [Bacillus pumilus SAFR-032] Length = 878 Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust. Identities = 346/912 (37%), Positives = 513/912 (56%), Gaps = 62/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH + PS+SL+P +DPTL++ NSG+ K F G+ P + Sbjct: 7 AQVRQMFLDFFKEKGHAVEPSASLVPHDDPTLLWINSGVATLKKYFDGRVVPDNPRICNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI+ AW+ LT + D Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIEWAWEFLTSDEWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L +TV+ EDEEA+ LW+ G+ ++IIR+ NFW + E GP GP +EIF+D+GE Sbjct: 123 NLLSVTVHPEDEEAYVLWRDKIGVPEERIIRL--EGNFWDIGE-GPSGPNTEIFYDRGES 179 Query: 183 I------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 P PG E ERY+E+WNLVF +F LPK +IDTGMGLERM +V Sbjct: 180 YGHDMNDPELYPGG--ENERYLEVWNLVFSEFNHNPDGSYTPLPKKNIDTGMGLERMVSV 237 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +Q N+D DLF +I+A E ++G Y +VI DH+R+ +F ++DG LP+N Sbjct: 238 IQNVPTNFDTDLFMPIIRAVETISGESYGETKEKDTAFKVIADHIRTVAFAVSDGALPSN 297 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ YA+ + P M L+P + M YP++ + I + +++E Sbjct: 298 EGRGYVLRRLLRRAVRYAKTIHIHRPFMFDLVPVVAEIMKDFYPDVQAKEEFIAKVIKNE 357 Query: 355 DERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 +ERF +TL+ GL +L V+ G +I DV FKLYDT+G P+++ ++ + Sbjct: 358 EERFHETLNEGLAILSEVIKKERDKGSSQISGEDV-FKLYDTYGFPVELTEEYAEDEHMT 416 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +E+QR RAR +GS + +L + + F+GY+ L M E Sbjct: 417 -VDREGFQAEMEKQRERARNARQDVGSMQVQG--GALGDIKVESTFVGYENLTAVAHMIE 473 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++Q GEIV EA G V+++ D+TPFYAE+GGQ+ D Sbjct: 474 -----------------------LLQNGEIVSEAHEGDTVQILLDETPFYAESGGQVADK 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + + I DV+K G VH +V G + + + ++ R+ + NH+ATH Sbjct: 511 GTLKSAEVIIDIKDVKKAPNGQHVHEGVVVSGTAKKGLVVTAEVESALRKGIVKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH AL +LGSHV+Q GS + + LRFD +H +T EL IE VN+ I + + V Sbjct: 571 LLHQALKDVLGSHVNQAGSLVNENRLRFDFSHFGQVTKEELSQIEKIVNEKIWEGISVAI 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + +A GA AL G KY D VRVV V G +S LCGG HV +T EI L I Sbjct: 631 DLKPIAEAKEMGAMALFGEKYGDIVRVVQV-----GDYSIELCGGCHVQNTAEIGLFKIA 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES I AG RRIEA+TG+ A L Q L+ AS LK + +V R+ + + +++Q Sbjct: 686 SESGIGAGTRRIEAVTGKGAYEELNDQLGILEQAASELKSNTKDVPKRIASLQADLKEVQ 745 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +L+ + +I V ++ ++ D L++++D L+ K+ S +I+ Sbjct: 746 RENESLLAKLSQAEAGSILEKVTEIGGVKVLTEKVNAKDMNHLRTMVDDLKAKLGSAVIV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G + K ++ VT+D++++ +A L + +A++ GGGGGGRP MAQ+GG K Sbjct: 806 L-GAVQNGKVNISAGVTKDVIEKGLHAGKLVKQAAEIC-GGGGGGRPDMAQAGGKQPEKL 863 Query: 886 DQAIAGVASFLK 897 ++A+ V +K Sbjct: 864 EEALTSVEESVK 875 >gi|182418956|ref|ZP_02950213.1| alanyl-tRNA synthetase [Clostridium butyricum 5521] gi|237667051|ref|ZP_04527035.1| alanine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377239|gb|EDT74807.1| alanyl-tRNA synthetase [Clostridium butyricum 5521] gi|237655399|gb|EEP52955.1| alanine--tRNA ligase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 879 Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust. Identities = 329/907 (36%), Positives = 524/907 (57%), Gaps = 60/907 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + + +R +L+FF+ GH L S SL+P ND +L+ N+GM P K FTG ++P + Sbjct: 3 FTKTNDLRDAYLKFFESKGHLKLDSFSLVPKNDNSLLLINAGMAPLKPYFTGLQEPPRKR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKCVR G D++NVG T+RH TFFEMLGNFSFG YFK+ I AW+ LT+ ++ Sbjct: 63 VTTCQKCVRTG----DIENVGITSRHGTFFEMLGNFSFGDYFKKEVIPWAWEFLTEVLEM 118 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY+T+Y +D+EA++ W ++ + I R+ DNFW GPCGPC+EI F + Sbjct: 119 PKDKLYVTIYLDDDEAYEFWTTLTDVDKSHIFRLGKEDNFWEHG-AGPCGPCTEIHFSRT 177 Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + +P E + ++ IE+WNLVF QF+ K L +IDTGMGLER+A V+Q Sbjct: 178 DDVPKNAEEFVELSDADKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVVMQ 237 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEG 296 EK + ++ID ++++ + G++Y N ++ R+I DH+RS +F+I+D I+P+NEG Sbjct: 238 EKNSIFEIDTLENILNEVANLAGVRYGENKKTDISLRLITDHIRSITFMISDDIMPSNEG 297 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + + LG + + +L + + AY EL + I++ ++ E++ Sbjct: 298 RGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDSKEAYAELEAKREYIKKVIKIEED 357 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F +TLD G+ +L+G +S L ++ +IL+G FKLYDT G P+++ ++IL G + +D Sbjct: 358 KFRETLDAGIEILNGFISELKENNKKILSGAEGFKLYDTFGFPMELTKEILEDEGFS-LD 416 Query: 415 IISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +F++ ++ QR RAR ++ +G T++ I ++ T+F GY Sbjct: 417 EDAFHEEMKIQRERARNARKVSNYMGADVKTSDAISADVE-----TEFDGY--------- 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 N + V+ ++ + + G K +V D TPFYAE GGQ+G Sbjct: 463 --------------TNNQLQGKVEVLIDGEDFADSLTEGNKGILVTDVTPFYAEMGGQIG 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + ++ D +K G VH V G ++ ++ L ID + R ++ NH+A Sbjct: 509 DTGLIYNDSFKAKVVDTKKNMGGKIVHFVEVLSGEVKINDTVTLEIDNERRERIRKNHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL +LGSHV Q GS +T + LRFD +H + ++ ++ +ED VN+ I PV Sbjct: 569 THLLDRALVKVLGSHVHQAGSLVTDERLRFDFSHFEGLSEEDILKVEDLVNEAIMSVTPV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 VT +M+ DA SGA + KY D+VRVV+ G +S LCGGTH+ +TG+I L Sbjct: 629 VTEVMDLNDAKNSGAIGIFDDKYGDKVRVVT-----AGEYSKELCGGTHIDNTGKIGLFK 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I+SES I AG RRIEA+TG+ A + ++E LK LK +Q + ++E+ +E ++ Sbjct: 684 ILSESGIAAGTRRIEAVTGKEAVKFINEKEELLKEACGKLKCTQKEITSKIEQNLKEIKE 743 Query: 770 LQLIHAKRKLQ---LNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + + K + + ++D+ S ++ +N +S+ + +VDS L+ V + ++ K+++ + Sbjct: 744 KEKEISALKAKFAAMGLDDIIASSKEVKGINVVSYELKDVDSDTLREVCEKVKDKVENSV 803 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNG 882 ++L+ E V+I N +L +V + GGGGGGRP MAQ+GG Sbjct: 804 VLLMS---ENAGKVIICAMASKDAVKNGAHCGKLIKEVSAILGGGGGGRPDMAQAGGKLP 860 Query: 883 NKADQAI 889 K + AI Sbjct: 861 EKINDAI 867 >gi|296185456|ref|ZP_06853866.1| alanine--tRNA ligase [Clostridium carboxidivorans P7] gi|296050290|gb|EFG89714.1| alanine--tRNA ligase [Clostridium carboxidivorans P7] Length = 879 Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust. Identities = 337/917 (36%), Positives = 524/917 (57%), Gaps = 68/917 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P VTT Sbjct: 6 LNELREMYLKFFESKEHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPKTRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFKE AI AW+ T+ L + Sbjct: 66 CQKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEAIPWAWEFTTEVLKLPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-- 181 +LY+T+Y +D+EA LW K + + +I R+ +DNFW GPCGPCSEI FD+G Sbjct: 122 KLYVTIYLDDDEAHDLWVKKTDIDPSRIFRLGKDDNFWEHG-IGPCGPCSEIHFDRGNEK 180 Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + L + E+ R +E WNLVF QF++ L +IDTGMGLER+AT++Q Sbjct: 181 INTVEEFLKAADED--RVVEFWNLVFTQFDKDEDGNYNKLKNPNIDTGMGLERIATIMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +++D + ++ +V ++Y + + ++ RVI DH+RS SF+I+DGILP+NEGR Sbjct: 239 TNSIFEVDTIRAILDEVSKVAKIEYGKDEKSDISMRVITDHVRSVSFMISDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + + LG + L + Y EL + + I++ ++ E+ER Sbjct: 299 GYVLRRLLRRAAKHGKSLGINNAFLYKLTDMVIDNSCGNYAELAEKRDYIKKVIKLEEER 358 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +T+D G+ +L+ + +L + IL+G+ AFKLYDT+G P+++ ++IL + + +D+ Sbjct: 359 FDETIDSGMQILNEFIENLKINNETILSGEKAFKLYDTYGFPIELTEEILEEKDMK-VDL 417 Query: 416 ISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 FN+ ++ QR RAR + +G KI ++ T+F GYD L Sbjct: 418 EGFNKEMQNQRERARAAREETNYMGAEDTILNKIPLEIE-----TKFNGYDTLH------ 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 +S VK +++ E V V G K +V + TPFYAE GGQ+GD Sbjct: 467 -----------------TTSKVKILIKNEEFVSTMVEGDKGVIVTENTPFYAEMGGQIGD 509 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G D + ++ D +K G +H V G + + + L ++ R + NH+AT Sbjct: 510 HGIISTDSFKAEVVDCKKNVAGKILHFVKVLSGTIGVDHQVTLNVNEARRNNIRRNHTAT 569 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL+ AL +LG HV Q+GS + + LRFD H + + ELK +E VND I + L V Sbjct: 570 HLLNEALRKVLGEHVHQSGSYVDDERLRFDFNHFEAPSHEELKKVEALVNDEIVKVLNVQ 629 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T+ M+ E+A +GA AL KY D VRVVSV G S LCGGTHVS++GEI L I Sbjct: 630 TQSMSLEEAKETGAIALFDNKYKDEVRVVSV-----GDFSKELCGGTHVSNSGEIGLFKI 684 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEE 766 +SE+ + AGIRRIEA+TG +A +++ +++ +K + + L+ S+ ++ +++ E+ E+ Sbjct: 685 ISEAGVAAGIRRIEAVTGPKAIAYVEAKNDLIKEIGNKLRCSEKEIIHKLDLQALELKEK 744 Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + ++ K KL + ED ++ + + ++ +VD L+ + D ++ K Sbjct: 745 DK--EIAELKSKLAGSAEDEILNGFQEVKGIKLFTGVLKDVDGNALRDLADKIRNKGGEC 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881 +++L G E K + + T++ + + V ++ +V + GGGGGGRP MAQ+GG Sbjct: 803 VVVL-GSVVEGKVQFVSMTTKEAIAK--GVHCGKIIKEVAAIAGGGGGGRPDMAQAGGKL 859 Query: 882 GNKADQAIAGVASFLKK 898 K + AI S L+K Sbjct: 860 PEKVEDAIGSCVSILEK 876 >gi|257792293|ref|YP_003182899.1| alanyl-tRNA synthetase [Eggerthella lenta DSM 2243] gi|317490214|ref|ZP_07948702.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA] gi|257476190|gb|ACV56510.1| alanyl-tRNA synthetase [Eggerthella lenta DSM 2243] gi|316910708|gb|EFV32329.1| alanyl-tRNA synthetase [Eggerthella sp. 1_3_56FAA] Length = 878 Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust. Identities = 323/865 (37%), Positives = 483/865 (55%), Gaps = 63/865 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQAV 61 + IR +L FF++ G + PSSSLIP +DP+L+ T++GMV FK F Q E P Y Sbjct: 7 AEIREKYLSFFEEKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAP-YIGT 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TTVQKCVR ND+D +G T RH +FFEMLGNFSFG YFKE A++ T+ L Sbjct: 65 TTVQKCVRT----NDIDIIGTTGRHQSFFEMLGNFSFGEYFKEEMCAWAYEFSTEVLGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RLY TVY +D+E ++WKK+ G+ D I R+ +DNFW TGPCGPCSEI+FDQGE Sbjct: 121 AERLYFTVYLDDDETIEIWKKL-GVPDDHISRLGEDDNFWRAGPTGPCGPCSEIYFDQGE 179 Query: 182 CIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + + +R++E WNLVF Q++ Q LPK +IDTGMGLER+A +LQ Sbjct: 180 DFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGTFVPLPKKNIDTGMGLERIAAILQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGR 297 +NY+ D+ + L+ E++TG Y + ++ R++ DH R+ +F+IADGILP+NEGR Sbjct: 240 VQSNYETDVLRSLVAVGEKLTGTTYGEDAAIDLSLRIMADHSRAVAFMIADGILPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ LLG +P + + + MG YPE+++ + L + SE+ER Sbjct: 300 GYVLRRLLRRAVMKGHLLGLDKPFLNDYVDEIVNLMGHVYPEIVENRELTRRVILSEEER 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 FG L +G LD L+ L + E+L GD AF L+DT+G P+++ +++ RG+ +D+ Sbjct: 360 FGSNLRQGRAFLDEALAEL-EGEVLPGDRAFTLHDTYGFPVEVTRELCDERGIE-VDMEG 417 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFS-------LKEKYGATQFIGYDLLRGSKFMK 470 F + ++EQR RARA + + E W + + E G T+F+GY Sbjct: 418 FGRCMDEQRERARAAN----TKDAEAAWSTYGGVMNEILEAVGPTEFLGY---------- 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 N + V A+V+ G V+ +G + VV D TPFYAE GGQ+GD Sbjct: 464 -------------TKNDAEARVLALVKDGVQVDVLEAGDEGRVVLDATPFYAEKGGQIGD 510 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G D + + D ++ +G+ H VE G L ++ ID R ++ NH+AT Sbjct: 511 AGVLAKDDAIVAVLDTKEPEKGLIAHTVKVESGRLSAGDAVHAAIDVPRRERIRRNHTAT 570 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H+LH AL +LG HV Q GS + LRFD TH + +T+ ++ +E N I +N PV Sbjct: 571 HILHWALREVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIAEVERLANQKIMENHPVR 630 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + A +G AL G KY + VRV+ +E S LCGGTHVS+T EI + I Sbjct: 631 AYETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFVKI 685 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE+S+ A +RRIEA+T A +++ + +LK A L+V +V R + + L Sbjct: 686 TSETSVGANLRRIEAVTSFDALAYMNRVEAELKEAAESLRVPLFDVSERTASNMKTLKDL 745 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKIQSG 823 Q KR + +D L + + + + + E D+ +++++ D L+ ++ Sbjct: 746 Q-TKLKRGREAVADDGINALLETAQTSAAGYPVVFGRMPEADAGQMRNMWDVLRARLGQP 804 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD 848 ++ K+ K ++L T + ++ Sbjct: 805 GAAVLATEKDGKPTLLAAGTPEAVE 829 >gi|323344880|ref|ZP_08085104.1| alanine--tRNA ligase [Prevotella oralis ATCC 33269] gi|323094150|gb|EFZ36727.1| alanine--tRNA ligase [Prevotella oralis ATCC 33269] Length = 873 Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust. Identities = 331/919 (36%), Positives = 514/919 (55%), Gaps = 73/919 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++ +FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKQPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L + L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVEVLHL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+T+++ D+EA + W K L D II +DNFW M +TGPCGPC Sbjct: 121 DPKDLYVTIFEGSPEENIPRDDEAARYWAK--HLPTDHIIEGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 +EI D + +PG +++ + IEIWN+VFMQF ++ +LP IDTGM Sbjct: 179 TEIHVDSRTPEEKAKVPGRELVNKDNPQVIEIWNVVFMQFNRKADGSLELLPMHVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLI 286 G ER+ +LQ K +NYD D+F+ +I+ +++G KY E +I V RV+ DHLR+ +F I Sbjct: 239 GFERLVRMLQGKHSNYDTDIFQPIIREISRLSGKKYGEHEDIDVAMRVVADHLRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP+N GYV+RRI+RRA+ Y+ L E M LLP L EMG+AYPEL + Sbjct: 299 ADGQLPSNAKAGYVIRRILRRAVRYSYTFLDQKEAFMYKLLPVLVREMGAAYPELSAQQE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LI ++ E++ F +TL++G+ LL+ ++ L GK+ L+G AF+L+DT+G PLD+ + Sbjct: 359 LIARVMKEEEDSFLRTLEKGINLLNAAMNELKAAGKN-CLDGAQAFRLFDTYGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 ++C +D F++ +E+Q++RAR ++ + +G W L++ G QF+GYD Sbjct: 418 -LICRENGFTVDEKQFDKEMEKQKARARNAAV-VENGD----WVVLRK--GEQQFVGYDY 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + R+V +K E+V D TPFY Sbjct: 470 TEHECHILRYRQVTQKKNTF----------------------------FELVLDYTPFYG 501 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ+GD G + +++I D K+ +H IV++ + +D + R Sbjct: 502 EMGGQVGDQGVLVNGNEKVEIIDT-KRENNQSIH--IVKQLPKEPSADFMACVDTEKRDA 558 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NH+ATHLL +AL +LG HV Q GS ++PD LRFD +H + +T E++ +E VN++ Sbjct: 559 SAANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHFQKVTDEEIRQVERMVNEM 618 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I Q+ P+ R E+A GA AL G KY D+VRVV S CGG H S Sbjct: 619 IRQDFPLDEHRDTPVEEAKKMGAVALFGEKYGDKVRVVRFG------PSCEFCGGIHAKS 672 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--NVVGR 759 TG I + I+SESS+ AGIRR EA+TG+ ++ LK + + ++ V+G+ Sbjct: 673 TGRIGMFKIISESSVAAGIRRFEAMTGKMCEETYYALEDTLKDIRTLFNNAKDLRGVIGK 732 Query: 760 -VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +EE + ++ HA+ + E + I + + I ++ K ++ +++ Sbjct: 733 YIEEHDLMKKDIEKFHAQTVERTKDEVIKRATIVNGTTVVRSILPIEPSAAKDLVFKIRE 792 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 I ++ ++G + K + +++++D++ NA + R +AK++ GGGGG+PH AQ Sbjct: 793 AIPQNLVCVIGSTVGDKPLLSVMLSDDMVKEHHLNAGQMIREAAKLI-QGGGGGQPHYAQ 851 Query: 877 SGGPNGNKADQAIAGVASF 895 +GG N + + A+ V + Sbjct: 852 AGGKNIDGINAAVDKVIAL 870 >gi|262408299|ref|ZP_06084846.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22] gi|294645925|ref|ZP_06723596.1| alanine--tRNA ligase [Bacteroides ovatus SD CC 2a] gi|294805880|ref|ZP_06764750.1| alanine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b] gi|262353851|gb|EEZ02944.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_22] gi|292638725|gb|EFF57072.1| alanine--tRNA ligase [Bacteroides ovatus SD CC 2a] gi|294446909|gb|EFG15506.1| alanine--tRNA ligase [Bacteroides xylanisolvens SD CC 1b] gi|295086606|emb|CBK68129.1| alanyl-tRNA synthetase [Bacteroides xylanisolvens XB1A] Length = 872 Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust. Identities = 348/927 (37%), Positives = 512/927 (55%), Gaps = 96/927 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD + GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++I FN+ +++Q+ RAR ++ + +G W LKE G T+F+GY Sbjct: 418 LILRENGMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695 I N+P+ R + E+A GA AL G KY DRVRV+ S+E+ CG Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CG 666 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQG 754 GTHV++TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDL 726 Query: 755 NVVGR--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 + R +++ E++ K + K +L NV+++ H I + F + + +EV Sbjct: 727 RIAIRKYLDENAGLKKQVEDFMKEKEAALKERLLKNVQEI--HGIKVIKFCAPLPAEV-- 782 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865 +K++ L+ +I + + G + K + ++++++L+ A +L + +AK++ Sbjct: 783 --VKNIAFQLRGEITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+PH A +GG N + A+ V Sbjct: 840 GGGGGQPHFATAGGKNADGLPAAVEKV 866 >gi|159902592|ref|YP_001549936.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211] gi|205830180|sp|A9B9E5|SYA_PROM4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|159887768|gb|ABX07982.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9211] Length = 890 Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust. Identities = 343/907 (37%), Positives = 527/907 (58%), Gaps = 72/907 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IRT FL FF + GH++LPS+SL+P +DPT++ T +GM+PFK +F G E+ V T QK Sbjct: 20 IRTAFLHFFAERGHQVLPSASLVP-DDPTVLLTIAGMLPFKPVFLGHEERPSSRVVTSQK 78 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RH T+FEMLGNFSFG YFK+ AIQ AW+L TK F LD + L Sbjct: 79 CIRT----NDIENVGRTARHQTYFEMLGNFSFGDYFKKEAIQWAWELSTKTFGLDPKYLV 134 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-----QGE 181 ++++ ED++A+++W+ I G++ D+IIR+ DNFWS TGPCGPCSE+++D Sbjct: 135 VSIFREDDDAYEIWRNIIGVNPDRIIRMDEADNFWSSGPTGPCGPCSELYYDFNPELGNH 194 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 CI E+ R+IE +NLVFM+F + + L +IDTGMGLERMA +LQ+ Sbjct: 195 CI------DLEDDTRFIEFYNLVFMEFNRDSTGRLSSLSNCNIDTGMGLERMAQILQKVP 248 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRG 298 NNY+ DL L++ + G+ Y+ + ++++VI DH+R+ LI+DG+ +N GRG Sbjct: 249 NNYETDLIYPLLEKVAYLVGVDYQKTDKKTRISYKVIGDHIRACVQLISDGVSASNLGRG 308 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 Y+LRR++RR + + RLLG +P ++ L + M S YP+L++ + +I + L+ E+ RF Sbjct: 309 YILRRLLRRIVRHGRLLGIPKPFLIDLGEVAISLMKSTYPQLLERRDVILKELQREELRF 368 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TL+RG LL +LS+ K+ ++G+ AF+LYDT+G PL++ Q+I + +D+ +F Sbjct: 369 LETLERGERLLADLLSNNPKE--ISGEQAFELYDTYGFPLELTQEIAEENSIE-VDLKAF 425 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +A++ QR RA+A S + + + +++E T F GY+ L Sbjct: 426 EKAMQRQRIRAKAASTTIDLTLQDTLDKAVRE-LKPTNFKGYECLTE------------- 471 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 +S V+AI GE+ +EA ++V D TPFY E+GGQ+GDTG + Sbjct: 472 ----------TSTVQAIFINGELAQEAQENDVIQVALDITPFYGESGGQIGDTGILFKES 521 Query: 539 IRLQITDVQK--KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + ++ + +FVH IV+ G L+ + + + NRR+ INH+ATHLL + Sbjct: 522 VTNCLIEIDSVIRNNDVFVHRGIVKNGRLQVGDIIQSQVHHINRRRAQINHTATHLLQAS 581 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L I+GS +SQ GS ++ + LRFD S P++S EL+ +E +N I+++ +V + M Sbjct: 582 LKEIVGSEISQAGSLVSFERLRFDFHCSSPVSSEELEKVEKKINLWISESHSLVVKEMKI 641 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +DA +GA A+ G KY VRVV V GV S LCGGTHV++T +I IV ES I Sbjct: 642 DDAKQAGAVAMFGEKYGTLVRVVDVP----GV-SMELCGGTHVANTADIGAFKIVGESGI 696 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 AGIRRIEA+ G + +D ++ L+ KV +V RV + +E + L LI Sbjct: 697 AAGIRRIEAVAGPGVFDYFNARDSVVRILSERFKVQSNEIVDRVIALQDEVKLLGKSLIK 756 Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGI 830 A+ ++ K I +++ H + V S+ L+S L ++ ++L G Sbjct: 757 AQEEIAFAKTSALVSKATAIKSSHYIIHRLDGVPSEALQSAAKVLVDQLGDCSAVLLAGT 816 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLAR--LSAKVLG------GGGGGGRPHMAQSGGPNG 882 + + +I+V F A +A + K LG GGGGGGRP+ AQ+GG + Sbjct: 817 PTQSDPNKVILVAA-----FGAKTVAHGLHAGKFLGPIAKMCGGGGGGRPNFAQAGGRDA 871 Query: 883 NKADQAI 889 D+A+ Sbjct: 872 KPLDKAL 878 >gi|298480309|ref|ZP_06998507.1| alanine--tRNA ligase [Bacteroides sp. D22] gi|298273590|gb|EFI15153.1| alanine--tRNA ligase [Bacteroides sp. D22] Length = 872 Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust. Identities = 348/927 (37%), Positives = 512/927 (55%), Gaps = 96/927 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD + GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++I FN+ +++Q+ RAR ++ + +G W LKE G T+F+GY Sbjct: 418 LILRENGMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695 I N+P+ R + E+A GA AL G KY DRVRV+ S+E+ CG Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CG 666 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQG 754 GTHV++TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDL 726 Query: 755 NVVGR--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 + R +++ E++ K + K +L NV+++ H I + F + + +EV Sbjct: 727 RIAIRKYLDENAGLKKQVEDFMKEKEAALKERLLKNVQEI--HGIKVIKFCAPLPAEV-- 782 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865 +K++ L+ +I + + G + K + ++++++L+ A +L + +AK++ Sbjct: 783 --VKNIAFQLRGEITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+PH A +GG N + A+ V Sbjct: 840 GGGGGQPHFATAGGKNADGLPAAVEKV 866 >gi|315924764|ref|ZP_07920981.1| alanine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621663|gb|EFV01627.1| alanine--tRNA ligase [Pseudoramibacter alactolyticus ATCC 23263] Length = 882 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 346/910 (38%), Positives = 515/910 (56%), Gaps = 53/910 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L FF+ GH L S SL+P ND +L+ NSGM P K FTG E P + VTT Sbjct: 6 LNEIRERYLAFFESKGHLRLKSFSLVPHNDKSLLLINSGMAPMKAYFTGDEVPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R D+DNVG+T RH TFFEM+GNFSFG YFK I AW+ +T + +D Sbjct: 66 CQKCIRT----PDIDNVGKTARHGTFFEMMGNFSFGDYFKPEVIPWAWEFITDKMGMDPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 ++Y+T+Y +D+ A LW+ + G++ D I+R+ DNFW TGPCGPCSEIF+D+GE Sbjct: 122 KIYVTIYLDDDTAHDLWRSV-GVAEDHIVRLGKEDNFWEHG-TGPCGPCSEIFYDRGEAY 179 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R++E WNLVF QF++ L +IDTGMGLERMAT+LQ Sbjct: 180 GCGKPTCGPGCDCDRFVEFWNLVFTQFDRDENDRYTPLDHPNIDTGMGLERMATILQGVD 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N +++D +H++ + G Y + V+ RVI DH+RS +F+I DGI+P+NEGRGY Sbjct: 240 NIFEVDTIRHVLDYICSLCGEHYGDDAEKDVSIRVITDHIRSVTFMIGDGIMPSNEGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRRI+RRA + RLLG + + + G AYPEL + + I++ ++ E+ERF Sbjct: 300 VLRRILRRAARHGRLLGIKGTFLHDVAKEVVAVSGDAYPELKEKQKTIQKIIQIEEERFD 359 Query: 360 KTLDRGLVLLDGVLSHLGKD----EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 T+D+GL L+ +L L + I +G AFKLYDT G P D+ ++I+ RG A I Sbjct: 360 ATIDQGLSQLNAMLEKLEAEAPGERIFSGAEAFKLYDTFGFPFDLTREIVEERGFA-IPY 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F +A++ QR RARA + F+ F+GYD L K D K+ Sbjct: 419 EDFEKAMDAQRERARAARAESDTAVWADDPFNPLGADAVDAFVGYDAL------KADGKI 472 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-A 534 L ++ +V+EA +G V V+ DQT FYA++GGQ+GD+G Sbjct: 473 L-----------------GLIVNDTLVDEAKAGDNVLVLLDQTVFYAQSGGQVGDSGVIE 515 Query: 535 IGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 DG R+ ++D + + +H+ VE G +T +++ ++ +R + NH+ATH+L Sbjct: 516 SADGTARIAVSDCRYGSLKRHIHYGKVESGSFKTGQTVISEVNKADRMATARNHTATHML 575 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG HV Q GS ++PD LRFD H +P+T+ E+ +E VN +I + +PV Sbjct: 576 QKALKQVLGDHVEQAGSFVSPDRLRFDFNHFQPMTAEEIARVETIVNQVILEAMPVTIFE 635 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + ++A GA AL G KY + VRVV V G +S LCGGTH+++ + + I+SE Sbjct: 636 TDIDEAKKLGAMALFGEKYGNIVRVVRV-----GDYSIELCGGTHLTNAAQAGMFKILSE 690 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE--YRKLQ 771 S + AGIRRIEA TG + + L+ ++ +K + +V ++ E+ E+ + + Sbjct: 691 SGVAAGIRRIEAATGMNTYHEMARAEATLRKVSGMVKANPAQLVEKIAELEEQGKAQDRE 750 Query: 772 LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLV 828 + K++ + I ++ + I+ VD EL+ + D L+ K+ SG I ++ Sbjct: 751 IAALKQQQAGSAAGEIAQNIVEIAGVKAAIAGVDGMEMDELRELSDRLKDKMGSG-IAVI 809 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G K + + T+DL+ R F+A +L R A+V GGGGGGRP MAQ+GG K Sbjct: 810 GTVNGGKINFIATATKDLVKRGFHAGNLIREVAQV-AGGGGGGRPDMAQAGGKRPEKMAD 868 Query: 888 AIAGVASFLK 897 A+ +K Sbjct: 869 ALEKAKDLIK 878 >gi|224025892|ref|ZP_03644258.1| hypothetical protein BACCOPRO_02638 [Bacteroides coprophilus DSM 18228] gi|224019128|gb|EEF77126.1| hypothetical protein BACCOPRO_02638 [Bacteroides coprophilus DSM 18228] Length = 872 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 340/923 (36%), Positives = 505/923 (54%), Gaps = 88/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F++FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VT QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ I A++ L L Sbjct: 61 VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEVIGWAYEYLVTVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D+EA W + D II +DNFW M +TGPCGPC Sbjct: 121 DPKDLYVTVFEGSPEEGLARDDEAAGYWGQF--FPEDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PG +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDSRSEEEKAAVPGRELVNKDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ ++G KY + V+ RV+ DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPIIKVIGDLSGKKYGDDEKVDVAMRVVADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ YA LG + M L+P L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVPVLIENMGGAYPELKAQQA 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LL+ ++ GK EI D AF LYDT G P D+ + Sbjct: 359 LIEKVMKEEEESFLRTLETGIRLLEKTMNEAKAAGKTEISGVD-AFTLYDTFGFPFDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL GL D+ F +++Q+ RAR ++ + +G W +LKE G T F+GY Sbjct: 418 LILRENGLTA-DVKGFEAEMQKQKERAR-NAAAVETGD----WVTLKE--GETTFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + + Q+ + + ++V TPF Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLSDTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + + I D KK + +H I ++ + ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIDIIDT-KKENNLPIH--ITKKLPEHLDAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHS THLL AL +LG+HV Q GS +TPD LRFD +H + +T +L+ +E VN Sbjct: 557 AACAANHSCTHLLDEALRQVLGTHVEQKGSLVTPDSLRFDFSHFQKVTPEQLREVEHLVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I +N+P+ R + E A GA AL G KY D VRVV S CGGTHV Sbjct: 617 AKIRENIPLTEYRNLPIEKARELGAIALFGEKYGDEVRVVQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQ 753 S+TG+I ++ I+SESS+ AG+RRIEA+TG + + L L + LK + Sbjct: 671 SATGKIGMVKIISESSVAAGVRRIEAVTGAKVEEIFDTVQDTLSDLKALFNNAPDLKAAI 730 Query: 754 GNVVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 + +++ EE+ K + K KL +D++ K+ + + + +K Sbjct: 731 SKYIDENAGLKKQVEEFMKEKEASVKNKLIEGAKDINGVKVIKA------VLPMPADAVK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 ++ L+ + + +++G + K + + ++ED + NA L R +AK++ GGGG Sbjct: 785 NIAFQLKGQFTENLFVVIGSVFDNKPLLTVTMSEDQVKAGLNAGQLVREAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + A+ V Sbjct: 844 GQPHFATAGGKNPDGLSAAVDKV 866 >gi|288803286|ref|ZP_06408720.1| tRNA ligase [Prevotella melaninogenica D18] gi|288334327|gb|EFC72768.1| tRNA ligase [Prevotella melaninogenica D18] Length = 887 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 339/935 (36%), Positives = 511/935 (54%), Gaps = 94/935 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G + P + T Sbjct: 3 ANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRRTD 62 Query: 64 VQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L LD Sbjct: 63 SQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGNYFKEGAIDYAYEYLVDVLHLD 122 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D+EA W+K + I+ +DNFW M +TGPCGPCS Sbjct: 123 PKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCGPCS 180 Query: 174 EIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + E +PG +++ + IEIWN+VFMQF ++ L IDTGMG Sbjct: 181 EIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLDPLKMHVIDTGMG 240 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVNHRV 274 ER+ ++Q+K +NYD D+F +I E+++G KY EG+N + RV Sbjct: 241 FERLVRLMQDKNSNYDTDIFAPVIAEIEKISGKKYNHTFPEGDNGEGINEEQKVDIAMRV 300 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM 333 + DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG E M LL L EM Sbjct: 301 VADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLVREM 360 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKL 390 G+AYPEL + LI ++ E++ F +TL++G++LL+G + L G+ + L+G AF+L Sbjct: 361 GTAYPELTAQRELIGRVMKEEEDSFLRTLEKGIMLLNGAMDELKAHGQTQ-LDGKEAFRL 419 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 +DT+G PLD+ + ++CA +D FN+ +E+Q++RAR ++ + +G W L+E Sbjct: 420 FDTYGFPLDLTE-LICAENGYTVDEKQFNEEMEQQKARAR-NAAAVENGD----WEVLRE 473 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 G +F+GYD + RKV +K Sbjct: 474 --GEQEFVGYDYTEYECHILRYRKVTQKKNSF---------------------------- 503 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 E+V D TPFY E GGQ+GD G + + + I D K+ VH IV+ E Sbjct: 504 YELVLDYTPFYGEMGGQVGDQGVLVSEDETISIIDT-KRENNQSVH--IVKELPKNLEAD 560 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +D + R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + IT Sbjct: 561 FMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKITDE 620 Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 621 ELRQVEKLVNEMIRKDYPMDEHRDTPMEEAKKMGAVALFGEKYGDKVRVVRFG------P 674 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF- 748 S CGG H +STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L S Sbjct: 675 SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLRSMF 734 Query: 749 -----LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803 LK V + I +E + R + VE + V+ + ++ Sbjct: 735 NNAKDLKAVLTKFVEENDSIKKELESFRTQAVSRAAKNMVE--HAETVNGVHVVKTVLP- 791 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAK 861 +D K ++ +++ + ++ ++G E + + I++++D++ + NA + R +AK Sbjct: 792 IDPASAKDIVFKVREALPEKLVCVLGSVYENRPLLSIMLSDDMVKDYNLNAGKIIREAAK 851 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++ GGGGG+PH AQ+GG N + A+ V + Sbjct: 852 LI-QGGGGGQPHYAQAGGKNADGIRSAVDKVIELI 885 >gi|226949919|ref|YP_002805010.1| alanine--tRNA ligase [Clostridium botulinum A2 str. Kyoto] gi|226843074|gb|ACO85740.1| alanine--tRNA ligase [Clostridium botulinum A2 str. Kyoto] Length = 879 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 338/916 (36%), Positives = 526/916 (57%), Gaps = 68/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L + Sbjct: 66 CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+G Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177 Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G +SEE ++ +E WNLVF QF++ + L +IDTGMGLERMAT++ Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295 Q +++D + ++ +++G Y+ + + ++ R+I DH+RS +F+I+DGILP+NE Sbjct: 237 QNVDTIFEVDTIRAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ Sbjct: 297 GRGYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T+D G+ +L+ + + + +IL+GD AFKLYDT+G P+++ ++IL G++ I Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNYKILSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415 Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 D FN+ ++EQR RAR+ + +G KI ++ T F GYD L Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFEGYDKLE---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V S V I++ E E G + +V TPFYAE GGQ Sbjct: 467 -------------------VKSKVAVIIKDEEFKNEMEKGNEGIIVTYNTPFYAEMGGQT 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG D + ++ D +K G +H + G + E ++L ++ + R + NH+ Sbjct: 508 GDTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T++MN E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + Sbjct: 628 VNTKVMNIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766 IVSE+ + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + Sbjct: 683 KIVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742 Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ ++ K KL ED + +I V S + ++D L+ + D ++ +QSG Sbjct: 743 EKEKEIEALKLKLASGAEDEILDNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881 +++L G + + K + + T+D + + V ++ +V + GGGGGGRP MAQ+GG + Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKD 859 Query: 882 GNKADQAIAGVASFLK 897 NK + AI V + ++ Sbjct: 860 PNKLEDAIKTVETVVE 875 >gi|225570650|ref|ZP_03779673.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM 15053] gi|225160477|gb|EEG73096.1| hypothetical protein CLOHYLEM_06750 [Clostridium hylemonae DSM 15053] Length = 879 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 348/909 (38%), Positives = 519/909 (57%), Gaps = 52/909 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLE+F+ GH ++ S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRKMFLEYFESKGHLIMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPKKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK+ +I+ W+ LT L+ Sbjct: 66 CQKCIRTG----DIENVGKTARHGTFFEMLGNFSFGDYFKKESIRWTWEFLTDVVGLEPD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EA+++W K G++ ++I R DNFW +GPCGPCSE+++D+G Sbjct: 122 RLYPSVYLDDDEAWEIWNKDIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEVYYDRGPKY 180 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RY+EIWN VF QF+ L + +IDTGMGLER+A V+Q Sbjct: 181 GCGSPDCTVGCECDRYMEIWNNVFTQFDNDGNNNYTELEQKNIDTGMGLERLACVVQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +DID K L +T +Y + V+ RVI DH+RS +F+I+DGI+P+NEGRGY Sbjct: 241 SMFDIDTIKALRDHVCHITKTEYGQDDETDVSLRVITDHIRSVTFMISDGIMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG ++ L + YPEL + K I + + E+E+F Sbjct: 301 VLRRLLRRACRHGRLLGVEGEFLVELARTVIEGSRDGYPELEEKKDFIFKVIAKEEEQFN 360 Query: 360 KTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL +L + + + K ++ L+GD AFKLYDT+G PLD+ ++IL +GL+ +D Sbjct: 361 KTIDQGLSILAEMEAEMEKNGEKTLSGDHAFKLYDTYGFPLDLTKEILEEKGLS-VDEEG 419 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F ++E QR AR A + G ++ S+ + ++F+GYD L Sbjct: 420 FRASMEVQRRTAREAREVTNYMGADATVYESIAPEV-TSEFVGYDNL------------- 465 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAI 535 S V + + EI + G + V ++TP YA +GGQ D G Sbjct: 466 ----------SFESSVTVLTTETEITDALSDGDRGTVFVEKTPLYATSGGQEADKGYIRT 515 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 DG ++ DV K G H V +G+++T ++ L +D +NR + NHSATHLLH Sbjct: 516 ADG-EFRVEDVVKLLGGKIGHVGYVTKGMIKTGDTVTLEVDEENRALSARNHSATHLLHK 574 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL T+LG+HV Q GS + + LRFD TH +T ELK +E+ VN I LPV + Sbjct: 575 ALRTVLGTHVEQAGSSVNAERLRFDFTHFSALTKEELKKVEEIVNAQIMAALPVKVENLP 634 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 E+A +GAAAL G KY D VRVVS+ G S CGGTHV +TG I I+SE+ Sbjct: 635 IEEARKTGAAALFGEKYGDIVRVVSM-----GDFSVEFCGGTHVENTGVITAFKIISETG 689 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLI 773 + AG+RRIEA+T + + +++L A +K S + ++ + E + L ++ Sbjct: 690 VAAGVRRIEALTSKGLLDYYDELEKRLAEAAKLVKASPDKLAEKITHLLAENKTLHSEVE 749 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGI 830 K KL + ++ +V + + +E VD L+ + D L+ K+ G+I++ Sbjct: 750 SLKSKLAQDAMGDVMDQVTEVKGVKLLATEVEGVDMNGLRDLGDQLKDKLGEGVIVIASA 809 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K +++ T+ +++ +A +L + A ++ GGGGGGRP+MAQ+GG N + AI Sbjct: 810 AG-GKVNLMATATKGAIEKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNPDGISSAI 867 Query: 890 AGVASFLKK 898 A L++ Sbjct: 868 AKAGEVLEE 876 >gi|119513305|ref|ZP_01632344.1| Alanyl-tRNA synthetase, class IIc [Nodularia spumigena CCY9414] gi|119462040|gb|EAW43038.1| Alanyl-tRNA synthetase, class IIc [Nodularia spumigena CCY9414] Length = 880 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 343/907 (37%), Positives = 524/907 (57%), Gaps = 55/907 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF + GH++LPS+SL+P DPT++ T +GM+PFK IF GQ + TT Sbjct: 11 NEIRDIFLNFFAQRGHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTAEFNRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK +AI W+L T+ F L + Sbjct: 70 QKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKPQAIAWGWELSTQVFGLPPEK 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+++D+EA+ +W+ G+ +I R+ +DNFW TGPCGPCSEI++D + Sbjct: 126 LVVSVFEDDDEAYNIWRDDIGVPEARIKRMGEDDNFWVSGHTGPCGPCSEIYYDFHPEL- 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ NNY Sbjct: 185 GDENIDLEDDTRFIEFYNLVFMQYNRDAEGNLTPLQNKNIDTGMGLERMAQILQQVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + ++ G+ Y ++ V+ +VI DH+RS +IAD I +N GRGYVL Sbjct: 245 ETDLIFPIIETAAEIAGIDYHKSDETTQVSLKVIGDHVRSVVQMIADEIRASNVGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG + + + SAYP + Q + I+ L+ E+ F +T Sbjct: 305 RRLIRRVVRHGRLLGINSEFITQVAETAISLSESAYPNVRQREAAIKAELQREEANFLRT 364 Query: 362 LDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 LDRG LL+ ++ + GK I +G+ AF LYDT G PL++ Q+I L +D F Sbjct: 365 LDRGEKLLEEIIQEVKQQGKTSI-SGESAFTLYDTFGFPLELTQEIAAENQLT-VDEAGF 422 Query: 419 NQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 N +++Q RA+A ++ L T + L E AT+FIGY Sbjct: 423 NTEMQKQVERAKAAHETIDL---TVQGSLDKLAEHIQATEFIGY---------------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 P+ N V+AI+ G EEA +G ++++V +QTPFYAE+GGQ+GD G G Sbjct: 464 --TQPVGTAN-----VEAILIDGIAQEEAEAGTEIQIVLNQTPFYAESGGQIGDKGYISG 516 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG+ +++ DV+++++ F+H +ERG +R S+ ID RR+ NH+ATHLL A Sbjct: 517 DGVLVRVEDVKRESD-FFIHFGRIERGTIRVGDSVTAQIDRTCRRRAQANHTATHLLQAA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ++ +SQ GS ++ D LRFD + +T+AE++ +E VN IA+ ++ Sbjct: 576 LKKLVDDSISQAGSLVSFDRLRFDFNCPRGLTAAEVEQVEAQVNTWIAEAHTANIEVLPI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +A A GA A+ G KY + VRV+ D S LCGGTHVS+T EI + I+SE+ + Sbjct: 636 AEAKARGAVAMFGEKYGEEVRVI-----DFPSVSMELCGGTHVSNTAEIGIFKIISEAGV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIH 774 +G+RRIEA++G +L +D+ +K L+ KV + R+ + E R + QL Sbjct: 691 ASGVRRIEAVSGPAILDYLNVRDKVVKDLSDRFKVKPEELPERITTLQTELRNSEKQLAT 750 Query: 775 AKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L + D + + + + + +VD + LK+ + L +KI +G ++L + Sbjct: 751 LKSQLAIAKSDSLLQTVESVGEYQILVAQMEDVDPESLKTAAERLLQKIGNGAVVLGSVP 810 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K S++ + ++ + A AK+ GGGGGGRP++AQ+GG + NK +A+A Sbjct: 811 EAGKVSIVAAFSAEVNKKGLQAGKFVGAVAKIC-GGGGGGRPNLAQAGGRDANKLPEALA 869 Query: 891 GVASFLK 897 S L+ Sbjct: 870 KAHSDLQ 876 >gi|282901157|ref|ZP_06309088.1| Alanyl-tRNA synthetase, class IIc [Cylindrospermopsis raciborskii CS-505] gi|281193989|gb|EFA68955.1| Alanyl-tRNA synthetase, class IIc [Cylindrospermopsis raciborskii CS-505] Length = 878 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 345/897 (38%), Positives = 520/897 (57%), Gaps = 55/897 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+F+ + H+ LPS+SL+P DPT++ T +GM+PFK IF GQ ++ TT QK Sbjct: 11 IRQLFLDFYTQRQHQPLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRAAEFKRATTSQK 69 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F+L RL Sbjct: 70 CIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFELPAERLV 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++V++ED+EAF +WK+ G+ +I R+ +DNFW TGPCGPCSEI++D + G Sbjct: 126 VSVFEEDDEAFNIWKQQVGVPEKRIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPEL-GD 184 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ NNY+ Sbjct: 185 DHIDLEDDSRFIEFYNLVFMQYNRDVSGNLTPLQNKNIDTGMGLERMAQILQKVPNNYET 244 Query: 247 DLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DL +I+ + ++ + Y + N V+ +VI DH+R+ +IAD I +N GRGY+LRR Sbjct: 245 DLIFPIIETAAKIAKINYHDSDENTKVSLKVIGDHVRAVVHMIADDIRASNVGRGYILRR 304 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 ++RR + + RL+G + + + S YP L Q + +I+ L E+ F KTLD Sbjct: 305 LIRRVVRHGRLIGIPGEFINQVAETAISLSQSVYPHLRQREAVIKAELEREESNFLKTLD 364 Query: 364 RGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 RG LL ++ + I++GD AF LYDT+G PL++ Q+I + L+ +D+ FN Sbjct: 365 RGEKLLGEIIQEVKHQGLTIISGDSAFTLYDTYGFPLELTQEIAQEQNLS-VDVEGFNTE 423 Query: 422 LEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + +Q RA+A ++ L G+ +K L E +T+FIGY L Sbjct: 424 MHKQVERAKAAHETIDLTVQGSLDK----LAEHIHSTEFIGYRQL--------------- 464 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 ++ + ++ +G A G V++V D+TPFYAE+GGQ+GD G GDG Sbjct: 465 --------STTAKIAVLLVEGIAQSTAPVGTNVQIVLDKTPFYAESGGQIGDQGYIFGDG 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + ++I DV+K+++ F+H +ERG ++ S+ +D NRR+ NH+ATHLL AL Sbjct: 517 LLIKIEDVKKESD-FFIHFGKIERGTVKVGDSVTAQVDTGNRRRAQANHTATHLLQAALK 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 I+ +SQ GS ++ D LRFD K +T E++ +ED VN I+Q P I+ + Sbjct: 576 KIVDEGISQAGSLVSFDRLRFDFNCPKSLTEDEVQQVEDLVNAWISQAHPAQVEILPLPE 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A A GA A+ G KY D+VRV+ GV S LCGGTHV++TGEI + I+S+ + A Sbjct: 636 AKARGAVAMFGEKYGDQVRVIDFP----GV-SMELCGGTHVNNTGEIGVFKIISQVGVSA 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 GIRRIEA++G +L +D+ +K L+ KV + R+ + E R + + K Sbjct: 691 GIRRIEAVSGAAVLDYLNVRDKVVKDLSDRFKVKPEEIPDRITILQTELRHNEKVIQNLK 750 Query: 779 LQLN-VEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 QL V+ + + A V II +++D + LK + L +KI +G ++L I + Sbjct: 751 SQLAIVKSDTLLQTAQVVGEHKIIVAQMTDIDPESLKDAAERLLQKIINGAVVLASIPEP 810 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K S++ + + ++ A AK L GGGGGG+P++AQ+GG + +K QA+ Sbjct: 811 GKVSIVAAFSSHVNEKGLQAGKFVGNIAK-LCGGGGGGKPNLAQAGGRDASKLPQAL 866 >gi|301300923|ref|ZP_07207095.1| alanine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851522|gb|EFK79234.1| alanine--tRNA ligase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 880 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 349/932 (37%), Positives = 524/932 (56%), Gaps = 86/932 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+FF+ GH+++ S+ LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T+ QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+LLT Sbjct: 61 HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD+D+ +LYITVY ED++A K W+++ G+ I DNFW + E GP GP SEIF Sbjct: 117 WFDMDKEKLYITVYPEDKDAKKYWEEV-GVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 172 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 FD+G+ + P PG E ERY+EIWN+VF +F + LP +IDTGMG Sbjct: 173 FDRGQEMNNLPEDDPESYPGG--ENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMG 230 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286 LER+ +V Q N++ DLF +I+ + +++ K G N V+ +VI DH R+ +F I Sbjct: 231 LERVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAI 290 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYV+RR++RRA+ + + LG E + L+P + M SAYPE+++ Sbjct: 291 GDGALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEF 350 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++ E++RF TL G+ LLD +++ ++ + L G FKLYDT+G PL++ ++ Sbjct: 351 IEKIIKMEEDRFNDTLKDGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEY 410 Query: 405 LCARGLAGIDIISFNQALEEQR-----SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 GL +D FN+ +E+Q+ +R+ A S+G+ +G L + ++++G Sbjct: 411 ANDEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL-------LTDITTPSEYVG 462 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 Y L+ NGV +K I+ E+V+ + + +V+FD+TP Sbjct: 463 YHELKA--------------------NGV---LKDIIIDNELVDTVPADSRAQVIFDKTP 499 Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVH--HAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + ++ DVQ G +H HA+ E + E + L + Sbjct: 500 FYAEMGGQVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHALKE---MTRENTYSLEV 556 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D ++ NH+ATHLL AL +LGSH Q GS + P LRFD T+ +T+ +LK I Sbjct: 557 DVAFHNKVKKNHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKI 616 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 ED VN I +N+ V T + ++E A GA AL G KY D VRVV V G +S CG Sbjct: 617 EDIVNAKIWENIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCG 671 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV++T EI L IVSES + AG+RRIEA+T + A L +++ L+ A LK+ Q Sbjct: 672 GTHVANTNEIGLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIK 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVD---SKE 808 V R E +E KL L K+ L+ + ++N + I +V+ + Sbjct: 732 EVPRKIEQLQEQVKL-LEQQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSGMSQ 790 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGG 866 L+ + D ++K S +++L + + K +++ ++ D + + A DL + ++ KV G Sbjct: 791 LRQLADQWKEKQLSDVLVLATATADGKVNLITAISSDAVKEGYKAGDLIKAIAPKVG--G 848 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGGRP +AQ+GG +A+ +L K Sbjct: 849 GGGGRPDLAQAGGKKPEGIQEALKAAEDWLNK 880 >gi|212693638|ref|ZP_03301766.1| hypothetical protein BACDOR_03157 [Bacteroides dorei DSM 17855] gi|237724236|ref|ZP_04554717.1| alanyl-tRNA synthetase [Bacteroides sp. D4] gi|265755936|ref|ZP_06090403.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA] gi|212663891|gb|EEB24465.1| hypothetical protein BACDOR_03157 [Bacteroides dorei DSM 17855] gi|229437424|gb|EEO47501.1| alanyl-tRNA synthetase [Bacteroides dorei 5_1_36/D4] gi|263234014|gb|EEZ19615.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_33FAA] Length = 872 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 345/921 (37%), Positives = 516/921 (56%), Gaps = 84/921 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PG+ +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++ G Y +N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPMLKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K+ Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKI 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEI-SGVDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++ FN +++Q+ RAR ++ + +G W ++KE G T F+GYD Sbjct: 418 LILRENGMT-VNEEEFNAEMQKQKERAR-NAAAVETGD----WITIKE--GDTHFVGYD- 468 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 F + + +L + I Q+ + + ++V TPFYA Sbjct: 469 -----FTEYETSILR--------------YRQIKQKNQTL--------YQIVLSDTPFYA 501 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+GDTG + + ++I D KK + +H I ++ ++ ++ +D + R Sbjct: 502 ESGGQVGDTGVIVSEFETIEIIDT-KKENNLPIH--ITKKLPEHLDVPMMACVDTEKRAA 558 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN Sbjct: 559 CAANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAK 618 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +N+P+ R + E A GA AL G KY D VRVV +S CGGTHVS+ Sbjct: 619 IRENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------NSIEFCGGTHVSA 672 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGN 755 TG+I ++ I+SESS+ AG+RRIEAITG + + + L L + LKV+ Sbjct: 673 TGKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAPDLKVAIRK 732 Query: 756 VVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812 + +++ EE+ K + K +L N ++++ K+ I + + +K + Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKA------IIPMSADVVKDI 786 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 L+ +I + + +++G K + ++++EDL+ NA L R +AK++ GGGGG+ Sbjct: 787 AFQLKGEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLI-QGGGGGQ 845 Query: 872 PHMAQSGGPNGNKADQAIAGV 892 PH A +GG N + + A+ V Sbjct: 846 PHFATAGGKNPDGLNAAVDKV 866 >gi|325833382|ref|ZP_08165831.1| alanine--tRNA ligase [Eggerthella sp. HGA1] gi|325485306|gb|EGC87775.1| alanine--tRNA ligase [Eggerthella sp. HGA1] Length = 878 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 323/865 (37%), Positives = 483/865 (55%), Gaps = 63/865 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQAV 61 + IR +L FF++ G + PSSSLIP +DP+L+ T++GMV FK F Q E P Y Sbjct: 7 AEIREKYLSFFEEKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKHLEAP-YIGT 64 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TTVQKCVR ND+D +G T RH +FFEMLGNFSFG YFKE A++ T+ L Sbjct: 65 TTVQKCVRT----NDIDIIGTTGRHQSFFEMLGNFSFGEYFKEEMCAWAYEFSTEVLGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RLY TVY +D+E ++WKK+ G+ D I R+ +DNFW TGPCGPCSEI+FDQGE Sbjct: 121 AERLYFTVYLDDDETIEIWKKL-GVPDDHISRLGEDDNFWRAGPTGPCGPCSEIYFDQGE 179 Query: 182 CIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + + +R++E WNLVF Q++ Q LPK +IDTGMGLER+A +LQ Sbjct: 180 DFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGTFVPLPKKNIDTGMGLERIAAILQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGR 297 +NY+ D+ + L+ E++TG Y + ++ R++ DH R+ +F+IADGILP+NEGR Sbjct: 240 VQSNYETDVLRSLVAVGEKLTGTTYGEDAAIDLSLRIMADHSRAVAFMIADGILPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA+ LLG +P + + + MG YPE+++ + L + SE+ER Sbjct: 300 GYVLRRLLRRAVMKGHLLGLDKPFLNDYVDEIVNLMGHVYPEIVENRELTRRVILSEEER 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 FG L +G LD L+ L + E+L GD AF L+DT+G P+++ +++ RG+ +D+ Sbjct: 360 FGANLRQGRAFLDEALAEL-EGEVLPGDRAFTLHDTYGFPVEVTRELCDERGIE-VDMEG 417 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFS-------LKEKYGATQFIGYDLLRGSKFMK 470 F + ++EQR RARA + + E W + + E G T+F+GY Sbjct: 418 FGRCMDEQRERARAAN----TKDAEAAWSTYGGVMDEILEAVGPTEFLGY---------- 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 N + V A+V+ G V+ +G + VV D TPFYAE GGQ+GD Sbjct: 464 -------------TKNDAEARVLALVKDGVQVDVLEAGDEGRVVLDATPFYAEKGGQIGD 510 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G D + + D ++ +G+ H VE G L ++ ID R ++ NH+AT Sbjct: 511 AGVLAKDDAIVAVLDTKEPEKGLIAHTVKVESGRLSAGDAVHAAIDVPRRERIRRNHTAT 570 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H+LH AL +LG HV Q GS + LRFD TH + +T+ ++ +E N I +N PV Sbjct: 571 HILHWALREVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIVEVERLANQKIMENHPVR 630 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + A +G AL G KY + VRV+ +E S LCGGTHVS+T EI + I Sbjct: 631 AYETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSEIGFVKI 685 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 SE+S+ A +RRIEA+T A +++ + +LK A L+V +V R + + L Sbjct: 686 TSETSVGANLRRIEAVTSFDALAYMNRVEAELKEAAESLRVPLFDVSERTASNMKTLKDL 745 Query: 771 QLIHAKRKLQLNVED-----LSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKIQSG 823 Q KR + +D L + + + + + E D+ +++++ D L+ ++ Sbjct: 746 Q-TKLKRGREAVADDGINALLETAQTSAAGYPVVFGRMPEADAGQMRNMWDVLRARLGQP 804 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD 848 ++ K+ K ++L T + ++ Sbjct: 805 GAAVLATEKDGKPTLLAAGTPEAVE 829 >gi|237714467|ref|ZP_04544948.1| alanyl-tRNA synthetase [Bacteroides sp. D1] gi|229445631|gb|EEO51422.1| alanyl-tRNA synthetase [Bacteroides sp. D1] Length = 871 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 347/921 (37%), Positives = 511/921 (55%), Gaps = 96/921 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ V QK Sbjct: 6 IRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQRVADSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L+ LY Sbjct: 66 CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKLNPEHLY 125 Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 TV++ D+EA W++ L D II +DNFW M +TGPCGPCSEI D Sbjct: 126 ATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPCSEIHID 183 Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + G + + + IEIWNLVFMQ+ ++ LP IDTGMG ER+ Sbjct: 184 LRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILP 292 LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I DG LP Sbjct: 244 MALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSITDGQLP 303 Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 +N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K LIE+ + Sbjct: 304 SNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKTLIEKVI 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E+E F +TL+ G+ LLD + GK EI +G AF LYDT G PLD+ + IL Sbjct: 364 KEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTELILREN 422 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ ++I FN+ +++Q+ RAR ++ + +G W LKE G T+F+GY Sbjct: 423 GMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-------- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 D T +SI+ + I Q+ + + ++V D TPFYAE+GG Sbjct: 467 --------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPFYAESGG 504 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GDTG + + +++ D KK + +H I ++ E ++ +D R + N Sbjct: 505 QVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKRAACAAN 561 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN I N Sbjct: 562 HSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVNARIRAN 621 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCGGTHVSS 701 +P+ R + E+A GA AL G KY DRVRV+ S+E+ CGGTHV++ Sbjct: 622 IPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CGGTHVAA 671 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVGR- 759 TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F + R Sbjct: 672 TGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDLRIAIRK 731 Query: 760 -------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812 +++ E++ K + K +L NV+++ H I + F + + +EV +K++ Sbjct: 732 YLDENAGLKKQVEDFMKEKEAALKERLLKNVQEI--HGIKVIKFCAPLPAEV----VKNI 785 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGR 871 L+ +I + + G + K + ++++++L+ A +L + +AK++ GGGGG+ Sbjct: 786 AFQLRGEITENLFFVAGSTDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGGGQ 844 Query: 872 PHMAQSGGPNGNKADQAIAGV 892 PH A +GG N + A+ V Sbjct: 845 PHFATAGGKNADGLPAAVEKV 865 >gi|325479403|gb|EGC82499.1| alanine--tRNA ligase [Anaerococcus prevotii ACS-065-V-Col13] Length = 870 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 326/912 (35%), Positives = 511/912 (56%), Gaps = 66/912 (7%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 ++ +R+ +L FF +NGH LL S LIP +D +L+ N+GM P K FTG++K T Sbjct: 6 MNELRSKYLNFFANENGHTLLKSFPLIPVDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKCVR D++ VG+T RH TFFEMLGNFSFG YFK+ AI A+ LTKE ++ + Sbjct: 66 SSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAITWAYQFLTKELEISK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 +++TV+ ED+EA+ +W GL +++I+R DNFW + E GPCGPCSEIF D+G Sbjct: 122 DDIWVTVFKEDDEAYNIWHDEIGLDSERILREGKEDNFWEL-EVGPCGPCSEIFVDRGSD 180 Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 + +++ +R++E+WNLVF QF + + L +IDTGMGLER+A VLQ Sbjct: 181 RAVDENDVKPGNDDSDRFMEVWNLVFTQFNKDAQGNYTPLAHPNIDTGMGLERIAMVLQN 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297 K N +++D+ +I E++ G+KY+ + V+ RVI DH ++ +FL+ADG++P+NE R Sbjct: 241 KDNIFEVDVMVEIISEIERLAGIKYKEDKKADVSIRVIADHAKAMTFLVADGVIPSNEKR 300 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + +LLG + +++ + Y EL + + I+E ++ E++R Sbjct: 301 GYVLRRLIRRAYRHGKLLGIEGEFLTNIIDKVIDTYKVEYEELAKNREKIKEIIKDEEDR 360 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KT+D+GL L+ ++S + ++ ++LNG+ AFKLYDT+G PLD+ ++IL + L +D Sbjct: 361 FQKTIDQGLERLEVLISDMEEENKDVLNGEEAFKLYDTYGFPLDLTKEILEEKNLK-VDE 419 Query: 416 ISFNQALEEQRSRARAHS-----LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 FN+ + Q+ AR L + T+ I T F+GYD L Sbjct: 420 EVFNEQMNIQKQTARQARKKDAGWSLDNLNTDGI--------RKTDFVGYDDL------- 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 V + I + + V G K ++ D+T FYAE GG++ D Sbjct: 465 ----------------DVDGEILNIFVENDQVSSINEGSKGIIISDKTSFYAEGGGEVAD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG D ++ DVQ K + I+ H+ V G + + +D R + NHSAT Sbjct: 509 TGFISSDNFEAKVMDVQ-KLKDIYFHYVEVISGKISINDTAKFKVDRDKRFDIQRNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL +LG + Q GS + + LRFD TH+K + + EL+ +ED VN+ IA+ V Sbjct: 568 HLLDQALRDVLGESIKQAGSLVDENKLRFDFTHNKALLTEELRQVEDIVNNEIAKQNFVK 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 +++ + + GA L KY D+VRVVS+ G +S LCGG HV+ T +I++ I Sbjct: 628 KEVVDYKKSQEMGAIGLFEDKYKDKVRVVSM-----GDYSKELCGGCHVNYTSDILMFKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 V ESS+ AG+RRIEAITG++A L D+ +K++A+ L + N+ R++ I +E Sbjct: 683 VQESSVSAGVRRIEAITGRKAYELLQNSDKSIKTIANKLNTNVNNISNRIDSIEKEIENY 742 Query: 771 QLIHAKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + R N D+ S + +N + EL+ + ++ + I Sbjct: 743 KS-EISRLKSTNSSDIISDLKNSVRNVKGINLLVKKFENASMDELREYENRIKNSFDNMI 801 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 I+ +S K + V + L+D+++A + R A+V GG GGG+ + AQ+GG + +K Sbjct: 802 IIFASVS--DKIVFTVSVDDKLVDKYDAGKIVREIAQVT-GGNGGGKKNFAQAGGKDISK 858 Query: 885 ADQAIAGVASFL 896 D+A+ V + Sbjct: 859 LDEALNKVNEII 870 >gi|291563232|emb|CBL42048.1| alanyl-tRNA synthetase [butyrate-producing bacterium SS3/4] Length = 884 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 346/915 (37%), Positives = 524/915 (57%), Gaps = 59/915 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ H + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRRMFLEFFESKEHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI AW+ LT+ + Sbjct: 66 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWAWEFLTECVGIPAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF++W + G+ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLDDDEAFRIWNEEIGIPKERIYRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 ---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P + G EG+R++E+WN+VF QF L + +IDTGMGLER+A V Q+ Sbjct: 181 GTGPEDVMGG--EGDRFMEVWNVVFSQFNNDGHGNYTDLIQKNIDTGMGLERLAVVCQDV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +D+D + L+ + +YE ++ V+ R+I DH++S +F+ +DGI+P+NEGRG Sbjct: 239 ASLFDVDTNRALMDEVGALAHCRYEEDDKKDVSLRIIADHVKSCTFMASDGIMPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YV RR++RRA + R+LG M L + YPEL + K +I + E+ERF Sbjct: 299 YVFRRLLRRAARHGRILGIEGNFMTKLAQVVIDLSKDGYPELEEKKDMILRVIDQEEERF 358 Query: 359 GKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 T+D+GL +L+ L KD ++L G+ AFKLYDT+G P+D+ ++IL +GL Sbjct: 359 ANTIDKGLE----ILADLEKDMEAKGTKVLAGEDAFKLYDTYGFPIDLTKEILDDKGLT- 413 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F++A++ QR AR+ + I+ L + F GYD L ED Sbjct: 414 VDEEGFHKAMQVQRETARSARKTTNYMGRDDIYQKLDASL-TSAFTGYDKL-------ED 465 Query: 473 RKVLCQKPPIDLTNGVSSIVK-AIVQQGE--IVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + V+++V+ A ++GE I + G+K V+ +TPFY GGQ+G Sbjct: 466 E------------SKVTALVRLAADEEGEDEIADAVTDGEKACVITSETPFYGTMGGQVG 513 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + ++ D G H + G+ +T ++ L ++ +NR + NHSA Sbjct: 514 DRGVIESANGKFEVEDTIHLQGGKIGHIGHMVSGMFQTGETVTLKVNEENRSLIGRNHSA 573 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL T+LG+HV Q GS +T D LRFD TH ++ E+K +E+ VN I LPV Sbjct: 574 THLLHKALRTVLGTHVEQAGSLVTRDRLRFDFTHFSAMSQDEIKEVENIVNKEIRAALPV 633 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 VT +M+ EDA +GA AL G KY D+VRVV + G S+ LCGGTHV +T EI Sbjct: 634 VTDVMSLEDAKKTGAMALFGEKYGDKVRVVRM-----GDFSTELCGGTHVKNTSEISCFK 688 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I+SE+ + AG+RRIEA+T H +++L + A+ K + ++ ++E + EE + Sbjct: 689 ILSEAGVAAGVRRIEALTSDGLIHHYENVEQELHAAAAAAKSTPADLTTKIESMMEEIKT 748 Query: 770 LQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L + K K +L E + ++ V ++ VD L+++ D L++K+ G+ Sbjct: 749 LHSENEKLKSKLAKEAMGDVMDQVQEVKGVKVLAVRADGVDMNGLRNLGDQLKEKLGEGV 808 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +++ + + K +++ VT++ + +A +L + A ++ GGGGGGRP+MAQ+GG Sbjct: 809 VVIASVL-DGKVNLMAAVTDEAQKKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKKPE 866 Query: 884 KADQAIAGVASFLKK 898 A+A VA + + Sbjct: 867 GVADALAKVAEVVSE 881 >gi|242310739|ref|ZP_04809894.1| alanyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489] gi|239523137|gb|EEQ63003.1| alanyl-tRNA synthetase [Helicobacter pullorum MIT 98-5489] Length = 859 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 331/891 (37%), Positives = 512/891 (57%), Gaps = 62/891 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 +R FLEFF+ GH++ S L+P +DP+L+FTN+GMV FK+IFTG+ P T+ Q Sbjct: 12 VRALFLEFFESKGHKVYESMPLVP-DDPSLLFTNAGMVQFKDIFTGKIPIPNPNIATSAQ 70 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFK+ AI AW+ +T+ + L Sbjct: 71 LCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGAYFKKDAIAYAWEFVTEVLGFSKEAL 130 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184 Y+TV++ D+EAF+LW K + +I R+ DNFW M +TGPCGPCSEIF DQGE Sbjct: 131 YVTVHENDDEAFELWTK--HIDPSRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQGEENFN 188 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ +L+ K +N+ Sbjct: 189 GPEDYFGGDGDRFLEIWNLVFMQYERDISGNLKPLPKPSIDTGMGLERVMALLEGKKSNF 248 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF LI EQ+ G KY + + RVI DH R+ +FL+A G+ EGRGYVLRRI Sbjct: 249 DSSLFMPLIAKVEQIVGQKYIYESGASFRVIADHARAVAFLLAQGVNFDKEGRGYVLRRI 308 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG +P + ++ ++C MG+ Y L + + I+ ++E+ERF +T++ Sbjct: 309 LRRAIRHGYLLGMRKPFVYEVIDSVCENMGNHYRYLREKQEAIKMQCKAEEERFFETIEN 368 Query: 365 GLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 G+ L + L +L K+ ++ +G+VAF+LYDT+G PLD+ QD+L G G+D+ SF Sbjct: 369 GMNLFNKELENLKKEKPNQLFSGEVAFRLYDTYGFPLDLTQDMLRENGF-GVDMDSFEVC 427 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +++Q+ +A+A+ G G E + +L K+G +F+GY ++ Sbjct: 428 MQKQKEQAKANWKGSGDNIKEGDFKTLISKFGENEFVGYTTMQ----------------- 470 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 S + A++ + + G+ V+ D+TPFY ++GG +GD G + ++ Sbjct: 471 ------FKSKISALLDENFKEVAKLQGEGY-VMLDKTPFYPQSGGPIGDKGVILDSNSKV 523 Query: 542 --QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++ D +K +E ++ E+ ++ Q R +++ +HSATHLLH AL Sbjct: 524 LAEVMDTRKYFGLNISQIKALESLVVGQEVVAQVS---QERLEIAKHHSATHLLHKALRE 580 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LG H++Q GS + + LRFD +H K ++ E++ IE VN+ I + P + M+ + A Sbjct: 581 VLGEHIAQAGSLVESNRLRFDFSHPKALSYEEIEKIEILVNEKICLSNPQICETMDIDSA 640 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA AL G KY VRV++ S LCGG HV +T I YI+ ES + +G Sbjct: 641 KAKGAMALFGEKYGKNVRVITFG------DSIELCGGIHVENTANIGSFYIIKESGVSSG 694 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYRKLQLIHAKRK 778 +RRIEA+ G+ A + G+ K+L K + +E I ++ +++ + ++ Sbjct: 695 VRRIEAVCGKAAYEY--GK----KALVEIAKAKEELKAQDLLEGIKKQKEQIKSLKSQST 748 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + ++L +I D+N + II VD E+K+++D + K + I+L+ + A V Sbjct: 749 TKATTQNL---QIEDINGVCVIIQSVDDAEMKTLVDNAKNKYEKVAILLIDTQGKIVAGV 805 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + A + A+V+ GG GGGR A +GG + K +A+ Sbjct: 806 KNATIK-------AGSWVKEVAQVM-GGNGGGRDDFATAGGKDTQKIKEAL 848 >gi|313893025|ref|ZP_07826602.1| alanine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412] gi|313442378|gb|EFR60793.1| alanine--tRNA ligase [Veillonella sp. oral taxon 158 str. F0412] Length = 871 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 339/900 (37%), Positives = 503/900 (55%), Gaps = 59/900 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF+ GH L + SLIP NDP+L+ +GM P K FTG+ P + +TT Sbjct: 4 NELRQAYLQFFESKGHLKLDTFSLIPENDPSLLLIGAGMAPLKPFFTGKLVPPCRRITTS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+R G DL+NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ LD+ R Sbjct: 64 QTCMRTG----DLENVGRTARHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTEVIKLDKNR 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+TVY +D+EA+ W K G+ I R+ DNFW + E GPCGP SEIFFDQG Sbjct: 120 LYVTVYPDDQEAYDTWHKDCGVEESHISRL--EDNFWEIGE-GPCGPDSEIFFDQGPEHG 176 Query: 182 C-IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 C P PG + +RY+EIWNLVF QF + L +IDTG GLER+A+VLQ Sbjct: 177 CDDPNCAPGC--DCDRYLEIWNLVFTQFNKMPDGSYEPLQHKNIDTGAGLERLASVLQGC 234 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL +I+A+ + G+ Y N V+ +VI DH R+ + LI+DG+LP+NEGRG Sbjct: 235 RTNFETDLIYPIIEATAKRAGVTYNENPNTDVSLKVIADHARAVTALISDGVLPSNEGRG 294 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ + RLLG + L+ + +G + + K ++ +++E+ERF Sbjct: 295 YVLRRILRRAVRHGRLLGIEGIFLTPLVDVVVEILGPGIKSIAEKKDFVKRVVQNEEERF 354 Query: 359 GKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +TL++GL LL+ ++ L K ++ G FKLYDT+G P ++ ++I RG ID Sbjct: 355 NQTLEQGLELLNSLIDTLAAEKATVVPGSEVFKLYDTYGFPWELTEEIASERGFT-IDHE 413 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F A++EQR RAR + ++ AT I + L+ + + ED V Sbjct: 414 GFEAAMKEQRERAREARVK-------------EDAKVATPDITF--LKDEELL-EDESV- 456 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 +S V + + + ++ A G ++ ++ TPF+AE GGQLGDTG +G Sbjct: 457 -----------KASSVLMVGKGAKRLQTAADGDEITIIVRTTPFHAEGGGQLGDTGFIVG 505 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++++ + ++ EG H V G + + L +D R ++ NH+ATHLLH A Sbjct: 506 PMGKVEVHNTKRLPEGTVYHIGTVVEGSISEGDDVALEVDTNRRSAMARNHTATHLLHAA 565 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ILG HV+Q GS +TPD LRFD TH P+T EL IE VN+ + + + M+ Sbjct: 566 LKQILGDHVNQAGSLVTPDYLRFDFTHFSPVTQEELDQIEALVNEEVLKATDLAIAEMSM 625 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 ++A GA AL G KY D VRVV V S LCGG+HV +T + + SE+ I Sbjct: 626 DEAKEKGAMALFGDKYGDVVRVVEVPG-----FSVELCGGSHVGNTAFVGSFRLTSEAGI 680 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIH 774 +G+RRIEAITG+ A ++ +A LK V R+ ++ E ++ +L Sbjct: 681 GSGVRRIEAITGRAALDAAKQDRLTIERMAGELKTKAPQVEERLHQVLAEAKETAKELEQ 740 Query: 775 AKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMD-ALQKKIQSGIIMLVGI 830 ++++ I DV F++ + EL+ + D L + SG++++ Sbjct: 741 IRKEVSAAGAADIIAGKVMIGDVAFVAAAVKASSIDELRDLADMGLDQLNGSGVVLVGAA 800 Query: 831 SKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + + V++D++ + A ++ + +A+V GG GGGRP MAQ+GG K QA+ Sbjct: 801 MGDDKVNFVCKVSKDVVAKGAKAGNIVKAAAQV-AGGNGGGRPDMAQAGGKEPAKLMQAL 859 >gi|260911261|ref|ZP_05917862.1| alanine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295] gi|260634634|gb|EEX52723.1| alanine-tRNA ligase [Prevotella sp. oral taxon 472 str. F0295] Length = 873 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 333/906 (36%), Positives = 496/906 (54%), Gaps = 75/906 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F +FF+ GH++ S+ ++ +DPTLMFTN+GM +K+I G P + Sbjct: 1 MMTANEIRESFKQFFEGKGHKIEASAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK AI AW+ L L Sbjct: 61 RADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKREAIDYAWEYLVDVLHL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + + +Y+TV++ D+EA + W K L AD II +DNFW M ETGPCGPC Sbjct: 121 NPQDIYVTVFEGSEEEGIARDDEAAEYWSK--HLPADHIINGNKHDNFWEMGETGPCGPC 178 Query: 173 SEIFFDQGECIPGG-LPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D +PG+ +++ + IEIWN+VFMQF +++ LP IDTGM Sbjct: 179 SEIHLDSRSAKEKAEVPGANLVNKDNPQVIEIWNIVFMQFNRKSDGSLQPLPMHVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +IQ +++G+KY + V+ RV+ DHLR+ +F I Sbjct: 239 GFERLVRSLQGKTSNYDTDVFQPVIQEISRLSGLKYGTDEKVDVAMRVVADHLRAVAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 ADG LP N GYV+RRI+RRA+ YA LG M LLP EMG AYPEL + Sbjct: 299 ADGQLPGNAKAGYVIRRILRRAVRYAYTFLGQRSAFMFKLLPTFIHEMGEAYPELKAQRE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403 LI ++ E++ F +TL++G+ +L+ + L + +L+G AF+L+DT+G PLD+ + Sbjct: 359 LIGRVMKEEEDSFLRTLEKGISMLNDEMERLKAEGKTMLDGAQAFRLFDTYGFPLDLTE- 417 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 ++C +D F+ +++Q+ RAR + W L+E G F+GYD Sbjct: 418 LICRENGLQVDAAQFDVEMQKQKERARN-----AAAVENSDWVVLRE--GEQTFVGYDYT 470 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + R+V +K E+V D TPFY E Sbjct: 471 EYECHILRYRQVTQKK----------------------------NTYFELVLDYTPFYGE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G + + + D K+ +H IV+ E + +D R Sbjct: 503 MGGQVGDCGVLVNGEETVDVIDT-KRENNQSIH--IVKALPKAPEADFMACVDTDKREAS 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NH+ATHLL +AL +LG HV Q GS + PD LRFD +H + +T EL+ +E VND+I Sbjct: 560 AANHTATHLLDYALKAVLGEHVEQKGSLVAPDTLRFDFSHFQKVTDEELREVERLVNDLI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 Q+LP+ R E+A A GA AL G KY D VRVV S CGG H ST Sbjct: 620 RQDLPLDEHRDTPVEEAKAMGAVALFGEKYGDTVRVVRFG------PSCEFCGGIHARST 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G I + IVSESS+ AGIRR+EA+TG+R + ++ L+ + + ++ ++ G + + Sbjct: 674 GRIGMFKIVSESSVAAGIRRVEALTGKRCEEAMYVLEDTLRGIRNLFNNAK-DLQGVIAK 732 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIA---DVNFMSHI--ISEVDSKELKSVMDALQ 817 EE+ ++ K Q VE L +A DVN + + + +++++ K+++ ++ Sbjct: 733 YMEEHDAMRKEIEKFSAQA-VERLKDSLVANAKDVNGLKVVKAVLPINAEQAKNLVFKVR 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMA 875 + I ++ +VG + K + I+ ++D++ NA + R +AK++ GGGGG+PH A Sbjct: 792 EAIPQNLVCVVGSTANDKPLLSIMFSDDVVSEHGLNAGQIIREAAKLI-QGGGGGQPHYA 850 Query: 876 QSGGPN 881 +GG N Sbjct: 851 SAGGKN 856 >gi|330802829|ref|XP_003289415.1| hypothetical protein DICPUDRAFT_153802 [Dictyostelium purpureum] gi|325080498|gb|EGC34051.1| hypothetical protein DICPUDRAFT_153802 [Dictyostelium purpureum] Length = 925 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 366/934 (39%), Positives = 498/934 (53%), Gaps = 128/934 (13%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL +F+ N H+ LPSSSLIP ND TL+FTN+GMV FKN FTG E+ Y+ VTT QK Sbjct: 38 IREKFLNYFETNKHKRLPSSSLIPHNDSTLLFTNAGMVQFKNQFTGLEESKYKLVTTSQK 97 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDLDQRR 124 CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFGGY FK +IQ AW+LLTK+F L + R Sbjct: 98 CVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGGYNHFKRDSIQHAWNLLTKDFGLPKER 157 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGECI 183 L I+V + DEE+ +W+ GLS DKI+ + DNFWSM + GPCGPCSEIF+D GE Sbjct: 158 LAISVLEGDEESASIWRDQIGLSNDKIMYLGKKDNFWSMGDGPGPCGPCSEIFWDHGE-- 215 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G +GER++EIWNLVFMQ+ + K E L +DTGMGLERMATVLQ KT N Sbjct: 216 -----GKEVDGERFLEIWNLVFMQYNRNEKGELEKLAMPCVDTGMGLERMATVLQGKTTN 270 Query: 244 YDIDLFKHLIQA-SEQVTGMKYEGNNIVN---------HRVIVDHLRSSSFLIADGILPA 293 YDIDLF++LI + EQV + ++I+ +RVI+DHLRS SFLI+DG++P Sbjct: 271 YDIDLFQNLINSFKEQVMIDPTKASHIIKQDPQRVEVAYRVIIDHLRSISFLISDGVIPF 330 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N GRGYVLR+I+RRA+ Y +LLG+ P + L L EM +P+L + I+ L + Sbjct: 331 NIGRGYVLRKIIRRALSYGKLLGFEGPFLYQLFSILEHEMADTFPQLRERSNEIKNVLLN 390 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ F K + RG+ L+ ++ G+ LN D F LY+T+GLPL+I ++ + I Sbjct: 391 EETTFYKAIKRGIPYLEEMIDR-GQ---LNEDNLFLLYNTYGLPLEI-SEVKAKQNNIEI 445 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTE-------KIWFSLKEKYGATQFIGYDLLRGS 466 D+ ++E R+++RA S K W K + +FIGY+ Sbjct: 446 DMEKVANLVDETRNQSRATWKSNESQPNTNNPLDEVKKW---KNDNISPKFIGYET---- 498 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 N S I K+ V + FD++PFY ++GG Sbjct: 499 -----------------TLNDESLITKSFFDN--------DNHLVYLSFDKSPFYGKSGG 533 Query: 527 QLGDTG--------------------------CAIGDGIRLQITDVQKK-AEGIFVHHAI 559 Q+GDTG D + IT+VQ AEG V + Sbjct: 534 QIGDTGIIKSKNSNQIYNVIDTIKPYDNSLVLVVKWDPTKQLITNVQDDLAEGSIV-SSQ 592 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 VE+ + R+Q +I+HSATHLLH AL I+G V Q GS + P+ LRF Sbjct: 593 VEKSV---------------RKQTAIHHSATHLLHAALREIIGKSVVQAGSFVGPNILRF 637 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 D TH K ++ E+ IE VND+I Q++ + T M +A A L KY D VRVV Sbjct: 638 DFTHGKKLSVKEIDQIEKWVNDVIDQDIYLETHEMPYSEASKGDAIQLFSEKYTDLVRVV 697 Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 S+ S LCGGTHV + +I I+SESS+ AG RRIEAI G+ A Sbjct: 698 SIP-----GFSKELCGGTHVERSSDIHHFKIISESSVAAGTRRIEAIAGKVATEWFKSHY 752 Query: 740 EKLKSLASFLKVSQGNVVGRVE-----------EIWEEYRKLQLIHAKRKLQLNVEDLSC 788 + ++S++ + V N +E EI E K+ L+ A ++ + C Sbjct: 753 KMVQSISDNINVPLTNFQPSIERLVSSNKQKEKEIEELNLKIALLSASSH-SGHICGVEC 811 Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848 D H++ DSK L + + K + I + V SK+ KA + ++ Sbjct: 812 GSGIDHPLSIHVVDCDDSKILNVIAGSFSKSNPNHINITV--SKKGKAICNLGANQEPNS 869 Query: 849 RFNAVD--LARLSAKVLGGGGGGGRPHMAQSGGP 880 D + +L + + GG GGG +A + P Sbjct: 870 LKTTADTIVKKLLSSLNCGGKGGGSKILANATIP 903 >gi|296271979|ref|YP_003654610.1| alanyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299] gi|296096154|gb|ADG92104.1| alanyl-tRNA synthetase [Arcobacter nitrofigilis DSM 7299] Length = 850 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 351/908 (38%), Positives = 509/908 (56%), Gaps = 78/908 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +L+FF+ GHE++ S L+P +DPTL+FTN+GMV FK+IFTG P T+ Q Sbjct: 3 IRKEYLDFFKNKGHEVISSMPLVP-DDPTLLFTNAGMVQFKDIFTGAIPAPKNPTATSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +T L +L Sbjct: 62 LCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEDAIAYAWEFITVNLALPIDKL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG----- 180 ++T+++ D+EAF +WKK + +I R DNFW+M +TGPCGPCSEIF+DQG Sbjct: 122 WVTIHESDDEAFNIWKKY--IEPSRIKRFGDKDNFWAMGDTGPCGPCSEIFYDQGVENFG 179 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E GG EG+R++EIWNLVFMQ+EQ N R LPK SIDTGMGLER+ + + Sbjct: 180 SDEDYLGG------EGDRFLEIWNLVFMQYEQSNGV-RTPLPKPSIDTGMGLERVIAIKE 232 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NN+D FK L+ ++ + I ++RVI DHLR+ SF+++ GIL NEGR Sbjct: 233 GVLNNFDSSNFKPLVNEVAKLAKKQPTKETIGSYRVIADHLRAVSFMLSQGILFGNEGRP 292 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YV RRI+RRA+ + LLG+ E M L+ L MG Y +L + I+E + E+ERF Sbjct: 293 YVNRRILRRAVRHGYLLGFREAFMSKLVDVLIKIMGEHYTDLKEQASFIKEQIMLEEERF 352 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 KT+ G+ L + L + K + +G+VAFKLYDT+G PLD+ +D+L + L +DI +F Sbjct: 353 FKTIASGMTLFNEELINTKK--LFSGEVAFKLYDTYGFPLDLTEDMLREKDLK-VDIETF 409 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++ + Q+++A+A G G +E + L EKYG +F+GY Sbjct: 410 DKLMNAQKAKAKAAWKGSGDEASEGDFKVLLEKYGVNEFVGY------------------ 451 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + T+ S+IV + ++ V+ GQ ++ D+TPFYA +GGQ GD G A+ D Sbjct: 452 ----ENTSYKSTIVTLLDEKFNEVDSLEKGQTGWIMLDKTPFYATSGGQSGDIG-ALEDK 506 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + I + K GI + VE L E V+ NR +++ +HSATHLL AL Sbjct: 507 QHIAIIEETSKFHGINLSKIKVETSSL--EKGEVVNAVVVNRYEIAKHHSATHLLQSALK 564 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG VSQ GS LRFD T+ K +T+ +++ ++D VN +I + L + E+ Sbjct: 565 MVLGDTVSQAGSLNNSSRLRFDFTYPKAMTNEQIEEVQDLVNSMITRGLKGSVEELPIEE 624 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A GA A+ G KY D VRVV+ G S CGGTHV +T +I YI+ ES + A Sbjct: 625 AKQRGAIAMFGEKYGDMVRVVNF-----GDVSVEFCGGTHVRNTLDIGSFYILKESGVSA 679 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+ G A + +++ ++ EI E + + +I +K Sbjct: 680 GVRRIEAVCGSAAIKY------------------TNSIISKMNEIESEIKNVDVISGIKK 721 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 L+ ++ L I + + I+E + K ++D ++ I+ EK A + Sbjct: 722 LKEQIKTLKQEVIEAQSASTTPIAEEMIGDTKVIVDIVKNGDIKKIVDDAKNGNEKVAIL 781 Query: 839 LIVVTEDLL--------DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 LI +D + A + + A ++ GGGGGGRP AQ+GG + +K D+A A Sbjct: 782 LIQAKDDKVMLVAGSKNTNIKAGNWIKEIAPIV-GGGGGGRPDFAQAGGKDVSKVDEAKA 840 Query: 891 GVASFLKK 898 ++ K+ Sbjct: 841 KALTYAKE 848 >gi|284032274|ref|YP_003382205.1| alanyl-tRNA synthetase [Kribbella flavida DSM 17836] gi|283811567|gb|ADB33406.1| alanyl-tRNA synthetase [Kribbella flavida DSM 17836] Length = 889 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 338/914 (36%), Positives = 514/914 (56%), Gaps = 64/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL++F+ GH ++PS+ L P DP L+F +GM F F GQ+ P Y T+V Sbjct: 4 SEIRRRFLQYFEDRGHTVVPSAPL-PSPDPNLLFNVAGMAQFVPYFVGQQTPPYPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFK++AI+ AWDL+TK + Sbjct: 63 QKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKDQAIEYAWDLVTKPQSEGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D+ LY +VY ED+EA +WK+++GL D+I+R+ DNFWSM GPCGPCSEI D+ Sbjct: 119 FDESVLYASVYYEDDEAIDIWKRVAGLPDDRIVRLGMKDNFWSMGVPGPCGPCSEILIDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMGLERM 233 G G E G+RY+E WNLVFMQ E K+ IL P +IDTG+GLER+ Sbjct: 179 GPEF--GADRDWEAGDRYLEFWNLVFMQNVRGEGGGKEGYPILGELPNKNIDTGLGLERV 236 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ID +I+ + +++G KY +++ V RV+ DH+RS+ LI DG+ Sbjct: 237 AYLLQGVDNMYEIDEIFPVIERAAELSGRKYGVDHVDDVRFRVVADHVRSALMLIGDGVT 296 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NE GYVLRR++RRA+ RLLGY +P ++ LLP +M +YPEL I + Sbjct: 297 PGNEQGGYVLRRLLRRAVRSMRLLGYEDPSLVELLPTSLEQMKKSYPELETDFGRISQIA 356 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E++ F +TL G + D + ++ + L G AF+L+DT+G P+D+ ++ +G Sbjct: 357 YAEEDAFRRTLTAGTSIFDVAVKNVKAEGGARLAGAQAFQLHDTYGFPIDLTVEMAAEQG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLG--LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 L +D F + EQR RA+A + LG T + L+EK G T+F GY L Sbjct: 417 LQ-VDTEGFRSLMTEQRERAKADARAKKLGHADTSG-YRELREK-GITEFTGYTEL---- 469 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S ++ ++++G + + A G+ VEVV ++TPFYAE+GGQ Sbjct: 470 -------------------ATDSQIRGVLREGAVAQAAEPGETVEVVLEKTPFYAESGGQ 510 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + DG++LQ+ DVQ+ +G+ VH V G+++ + + +D++ R + H Sbjct: 511 IADEGLIVADGVKLQVLDVQRPVKGLIVHKVKVLEGVVQPGLDVHAQVDHEWRVEACQAH 570 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 S TH++H AL +LG Q+GS P LR D S + A IE+ N + Q+L Sbjct: 571 SGTHVVHAALRQVLGPTALQSGSYNKPGYLRLDFAWSSALDQATRSEIEEVANLAVRQDL 630 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV + M +A GA AL G Y+++VRVV + GG S LCGGTHV + ++ Sbjct: 631 PVSAQYMTLPEAREWGALALFGETYDEQVRVVEI----GGPWSRELCGGTHVKHSSQVGA 686 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 L + SESS+ AG+RR+EA G A L + ++ L+ LK + +V ++ E Sbjct: 687 LTVTSESSVGAGVRRLEAFVGLEALRFLGRERSLVRLLSENLKTRPEELPAKVADLAERL 746 Query: 768 R----KLQLIHAKRKLQLNVEDLSCHK-IADVNFMSHIISE-VDSKELKSVMDALQKKI- 820 R +L+ + A + + E + K + V ++ H + V+ +L+ + ++ ++ Sbjct: 747 RAAEKELEKVRASQVMAAAGELAASPKDVFGVAYVGHRAPDGVNGGDLRKLALDVRGRMP 806 Query: 821 --QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + ++ LVG++ K A V+ + R A DL R++A+ L GG GGG+ +AQ G Sbjct: 807 ADKPAVVALVGVNDGKPAVVVALNDTAREWRLKAGDLVRVAAEQL-GGRGGGKDDVAQGG 865 Query: 879 GPNGNKADQAIAGV 892 G + AD+A++ V Sbjct: 866 GTDPAGADKALSAV 879 >gi|84496692|ref|ZP_00995546.1| alanyl-tRNA synthetase [Janibacter sp. HTCC2649] gi|84383460|gb|EAP99341.1| alanyl-tRNA synthetase [Janibacter sp. HTCC2649] Length = 897 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 348/929 (37%), Positives = 511/929 (55%), Gaps = 83/929 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L FF+KNGH ++PS+ LI +DP L+F N+GMVPFK F+GQE P ++ T+ Sbjct: 3 TAEIRRRWLAFFEKNGHTVVPSAPLI-HDDPNLLFVNAGMVPFKPYFSGQETPPWERATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 VQKCVR G D++ VG+T+RH TFF+M GNFSFG YFK+ AI+ AW LLT D Sbjct: 62 VQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKKDAIRFAWQLLTTSQDEGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RL+ TVY++D+EA +LW + + + D+I+R DN+W M GP GPCSEIF+D Sbjct: 118 GLDPDRLWATVYEDDDEAERLWAEYTSIPLDRIVRRGKLDNYWHMGVPGPGGPCSEIFYD 177 Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGL 230 +GE + GG P E+ RY+EIWNLVFMQ E Q ++ F LP +IDTGMGL Sbjct: 178 RGEEYGVEGG-PAVDED--RYMEIWNLVFMQEELSQVRAKDDFDIEGPLPAQNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280 ER+A+VLQ N Y+ID ++ + ++TG Y N + V RV+ DH+R Sbjct: 235 ERIASVLQGVDNLYEIDEVYPVLAKAAEMTGKSYGANSGHSAQGSHPDDVRLRVVADHIR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 SS LI DG+ P NEGRGYVLRR++RRA+ RLLG+ +P + HLLP M +YPEL Sbjct: 295 SSLMLIGDGVTPGNEGRGYVLRRMLRRAVRSMRLLGFEDPALPHLLPISMERMKQSYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPL 398 I + +E+E F +TL G +LD +S + L GD AF+L+DT+G P+ Sbjct: 355 ETGFERISKIAYAEEEAFRRTLASGTTILDTAVSRTKESGGTTLAGDQAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG-TTEKIWFSLKEKYGATQF 457 D+ ++ GL +D F + + EQR+RA+A + SG ++W L+ G T F Sbjct: 415 DLTLEMAEEHGLT-VDREGFTRLMLEQRNRAKADAKSKKSGHANTEVWKELRTS-GETDF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 R + + + KV+ +V G VEE GQ+ +VV D+ Sbjct: 473 ------RAWQELTSEAKVV-----------------GLVVDGVRVEEIEPGQQGQVVLDR 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE+GGQ+ D G DG+ L++ DVQ+ +G+ H V G LR +++ +D Sbjct: 510 TPFYAESGGQIADEGIITADGVHLKVMDVQRPVKGLIAHTVEVVHGPLRAGSAVLAEVDP 569 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + R HS TH++H AL +LG Q+GS P LR D + ++ IE+ Sbjct: 570 EWRISACQAHSGTHVIHAALRQVLGPSALQSGSYNKPGYLRLDFAWGQALSPETRSEIEE 629 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N + ++LPV + M+ A +GA AL G Y + VRVV + GG S LCGGT Sbjct: 630 VANLAVRKDLPVSAQWMSLAQAREAGALALFGETYGEDVRVVEI----GGPWSRELCGGT 685 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV + ++ L + ESS+ +G+RR+EA G A +L + + L+ + G + Sbjct: 686 HVGHSSQVGALTVTGESSVGSGVRRLEAFVGMDALRYLARERAIVAELSGIVGAQPGELT 745 Query: 758 GRV----------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII-SEVDS 806 RV E E RK ++ A L N +D + V F+ H E + Sbjct: 746 ERVGAMVARLKDAERELERTRKQAVLAAAGSLSDNAKD-----VGGVRFVGHDAGGEAGA 800 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVL 863 ++++++ ++K+ +V ++ K ++V+ + R A +L R++A+ L Sbjct: 801 DDVRAMVLDARQKLGDAAPSVVAVTGGAKGRPVVVIATNQAARDKGIKAGELVRIAAQTL 860 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGGG+ +AQ GG + K+ +AI V Sbjct: 861 -GGGGGGKDDIAQGGGQDIAKSGEAINAV 888 >gi|160886801|ref|ZP_02067804.1| hypothetical protein BACOVA_04814 [Bacteroides ovatus ATCC 8483] gi|156107212|gb|EDO08957.1| hypothetical protein BACOVA_04814 [Bacteroides ovatus ATCC 8483] Length = 872 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 348/927 (37%), Positives = 511/927 (55%), Gaps = 96/927 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD + GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++I FN+ +++Q+ RAR ++ + +G W LKE G T+F+GY Sbjct: 418 LILRENGMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPDHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695 I N+P+ R + E+A GA AL G KY DRVRV+ S+E+ CG Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CG 666 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQG 754 GTHV++TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNAPDL 726 Query: 755 NVVGR--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 + R +++ E++ K + K +L N++++ H I V F + + +EV Sbjct: 727 GIAIRKYLDENAGLKKQVEDFMKEKEAALKERLLKNIQEI--HGIKVVKFCAPLPAEV-- 782 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 +K++ L+ +I + + G K + ++++++L+ A +L + +AK++ Sbjct: 783 --VKNIAFQLRGEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLI-Q 839 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+PH A +GG N + A+ V Sbjct: 840 GGGGGQPHFATAGGKNTDGLPAAVEKV 866 >gi|237719250|ref|ZP_04549731.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4] gi|293372256|ref|ZP_06618641.1| alanine--tRNA ligase [Bacteroides ovatus SD CMC 3f] gi|229451629|gb|EEO57420.1| alanyl-tRNA synthetase [Bacteroides sp. 2_2_4] gi|292632698|gb|EFF51291.1| alanine--tRNA ligase [Bacteroides ovatus SD CMC 3f] Length = 872 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 348/927 (37%), Positives = 511/927 (55%), Gaps = 96/927 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD + GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++I FN+ +++Q+ RAR ++ + +G W LKE G T+F+GY Sbjct: 418 LILRENGMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695 I N+P+ R + E+A GA AL G KY DRVRV+ S+E+ CG Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CG 666 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQG 754 GTHV++TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDL 726 Query: 755 NVVGR--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 + R +++ E++ K + K +L N++++ H I V F + + +EV Sbjct: 727 GIAIRKYLDENAGLKKQVEDFMKEKEAALKERLLKNIQEI--HGIKVVKFCAPLPAEV-- 782 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 +K++ L+ +I + + G K + ++++++L+ A +L + +AK++ Sbjct: 783 --VKNIAFQLRGEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLI-Q 839 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+PH A +GG N + A+ V Sbjct: 840 GGGGGQPHFATAGGKNTDGLPAAVEKV 866 >gi|291276861|ref|YP_003516633.1| alanyl-tRNA synthetase [Helicobacter mustelae 12198] gi|290964055|emb|CBG39895.1| alanyl-tRNA synthetase [Helicobacter mustelae 12198] Length = 850 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 331/895 (36%), Positives = 508/895 (56%), Gaps = 53/895 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL+FFQ GH++ S L+P D +L+FTN+GMV FK+IFTG+ P T+ Q Sbjct: 4 IRKKFLDFFQSKGHQVYASMPLVP-EDASLLFTNAGMVQFKDIFTGKIPTPSIPRATSSQ 62 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI AW+ +T+ D+ L Sbjct: 63 LCIRAGGKHNDLENVGFTRRHHTLFEMLGNFSFGDYFKKEAIAYAWEFVTEVLGFDKEVL 122 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI++++ D+EAF++W K ++ D+I R+ DNFW M +TG CGPCSEIF DQG Sbjct: 123 YISIHESDDEAFEIWSKY--VNPDRIKRMGDKDNFWQMGDTGACGPCSEIFVDQGSSFAS 180 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 +G+R++EIWNLVFMQ+E+++ LPK SIDTGMGLER++ +L+ K +N+D Sbjct: 181 SEDYFGGDGDRFLEIWNLVFMQYERKSDGTLIPLPKPSIDTGMGLERVSALLEGKESNFD 240 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 LF LI+ E++ G Y + ++RVI DH R+ +FL+A G EGRGYVLRRI+ Sbjct: 241 SHLFMPLIKEVEKLCGKPYHYESGASYRVIADHARAVAFLLAQGSNFDKEGRGYVLRRIL 300 Query: 306 RRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRG 365 RRA+ + LLG+ ++ +C EMG Y L++ K I + E+ERF +T+++G Sbjct: 301 RRAVRHGYLLGFEGAFFYRIVEKVCEEMGGFYTYLLEQKNFISMQTKMEEERFFETIEQG 360 Query: 366 LVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 + L L + + +++ +G++AF+LYDT G PLD+ QD+L L +D+ F +++ Sbjct: 361 IHLFKKELERMREMGEKVFDGNIAFRLYDTFGFPLDLTQDMLKEENLE-LDLAGFESSMQ 419 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 +Q+ A++ G G + + + +++G+ F GY R K+L Sbjct: 420 KQKQLAKSSWKGSGDPLIKGDFKQVLQEFGSNIFNGYTHDR------HHSKIL------- 466 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 ++ +++ EI++ ++ ++ D TP Y E+GG +GD G + +G + Sbjct: 467 ------ALFDENLERQEILQ-----KEGYILLDTTPLYPESGGAIGDRGVLLENGECIAK 515 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 KK G+ + ++ + E+ VL +D+ +R++++ +HSATHLLH L GS Sbjct: 516 ILDTKKYFGLNISQISPKKPLKVGEIYEVL-VDH-SRQEIAKHHSATHLLHAILREKFGS 573 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 V+Q GS + + LRFD + +PIT EL I+D+VN +IA+NLP M A G Sbjct: 574 QVAQAGSLVEANRLRFDFSFPRPITKEELLEIQDSVNALIAKNLPARVEHMEIGQAKTRG 633 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY + VRVVS G S LCGG HV +TG I YI E+ + +G+RRI Sbjct: 634 AIALFGEKYGENVRVVSF-----GEESCELCGGIHVQNTGFIGNFYITKENGVSSGVRRI 688 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+ G H + + LK +Q ++G V ++ E+ + L+ ++LQ Sbjct: 689 EAVCGNAGYLHAKESLLHNQQIKEILK-NQDMMLG-VAKLKEKIKTLE-----KQLQNPK 741 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 +D S ++ +N +S I+ +S E+K ++D + I+L+ EK L + Sbjct: 742 KDTSL-QVQQINGISLIVQITESTEIKKLIDEAKNHYDKVAILLI---NEKN---LAIAA 794 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A D + +A++L GG GGGR A +GG +K A+ + K+ Sbjct: 795 GSKNTNIKADDWVKKTAQIL-GGNGGGRDDFATAGGKEHSKIKAALQSAILYAKE 848 >gi|295839933|ref|ZP_06826866.1| alanine-tRNA ligase [Streptomyces sp. SPB74] gi|295827712|gb|EDY43697.2| alanine-tRNA ligase [Streptomyces sp. SPB74] Length = 866 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 337/895 (37%), Positives = 503/895 (56%), Gaps = 81/895 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH+++PS+SLI +DPTL+ +GMVPFK F G+ KP T+V Sbjct: 4 AEIRRRWLRFFEERGHKVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT F Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADGGFG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ RL+ITVY +D+EA ++W+ + G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LEAERLWITVYQDDDEAEQIWRDVVGVPAERIQRLGKADNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ + K + IL P +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGRGKDDFEILGDLPSQNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ D + +I + ++TG+ Y + V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVRNMYETDTLRVVIDKATELTGVAYGAAVASDVSLRVVSDHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T P++ L+ + MG YPEL+ + +E Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGPVVQDLVDVVIDTMGQQYPELVTDRKRVETVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G +LD ++ +L G+ AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKTLKAGTNILDTAVTETRATGSTVLPGEKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A S +G + + + + GAT F GY L G Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADSQAKKTGHADLHAYREIADAAGATDFTGYVQLEG--- 473 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 E R V L +GV + A G +VEVV D+TPFYAE GGQ+ Sbjct: 474 --EARIVGL------LVDGVPA------------PAASEGDEVEVVLDRTPFYAEGGGQI 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GDTG + +G ++I DVQK G+ VH V+ G + + + ID RR ++ H Sbjct: 514 GDTGRIRLDNGAVVEIRDVQKPVPGVHVHKGRVQVGEITVDAPVWAAIDQTRRRAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + +A + +E +N+++++ + Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPAAVPTAVMTDVEQRINEVLSREM 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYHFLAREHTVVSQLQELVK-------GRPEELPEKI 741 Query: 768 -----------RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSV 812 ++++ A++ LQ + K DV+ + + +V + +L+ + Sbjct: 742 SGMLGKLKDAEKEIERFRAEKVLQAAAGLAAGAK--DVHGTALVTGQVPDGTGADDLRRL 799 Query: 813 MDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVL 863 + ++ +I + ++ L ++ + +V + E +R F A DL R +AK L Sbjct: 800 VLDVRGRIPGDRPAVVALFAVTGGRPVTV-VATNEAARERGFKAGDLVRTAAKAL 853 >gi|119716634|ref|YP_923599.1| alanyl-tRNA synthetase [Nocardioides sp. JS614] gi|205830163|sp|A1SJC7|SYA_NOCSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119537295|gb|ABL81912.1| alanyl-tRNA synthetase [Nocardioides sp. JS614] Length = 896 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 343/918 (37%), Positives = 518/918 (56%), Gaps = 67/918 (7%) Query: 3 NVSSIRTTFLEFFQKN----GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 + + IR F+ F+ N H +PS+SL+ +DP L+F N+GMVPFK F GQE P Y Sbjct: 2 DTAEIRRRFVAHFEHNTTVGAHTPVPSASLL-LDDPNLLFVNAGMVPFKPYFLGQEAPPY 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 T+VQKCVR D+++VG+T RH TFFEM GNFSFG YFKE AI+LAWDL+T+ Sbjct: 61 PRATSVQKCVRT----PDIEDVGKTTRHGTFFEMCGNFSFGDYFKEGAIELAWDLVTRPL 116 Query: 118 ----FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + L++ +LY +VY++D EA LWKK++GL ++IIR+ +N+WSM GP GPCS Sbjct: 117 ADGGWGLEESKLYPSVYEDDPEAVALWKKVTGLPEERIIRLGKRENYWSMGVPGPGGPCS 176 Query: 174 EIFFDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERF----ILPKMSIDT 226 EI +D+G + P G G E +RY+EIWNLVFMQ E +E F LPK +IDT Sbjct: 177 EILYDRGPDYGPDGDFGPKGE-DRYLEIWNLVFMQDELSAVRSKEDFDIAGSLPKKNIDT 235 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLER+A +LQ K N Y+ID+ +IQ +E++TG +Y + ++ V RV+ DH+RSS Sbjct: 236 GMGLERVAFLLQGKANMYEIDVMFPVIQKAEELTGRRYGADHDDDVRFRVVADHVRSSMM 295 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI DG+ P NE RGYVLRR++RRA+ RLLGY +P + L P +MG Y L + Sbjct: 296 LIGDGVTPGNEARGYVLRRLLRRAVRSMRLLGYEDPALPELFPISRDKMGETYTALHRDW 355 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQ 402 I +E+ F +TL G + D + L + L+GD AF L+DT+G P+D+ Sbjct: 356 ERISTVAYAEEHAFRQTLRSGTTIFDQATAELKQAGGSQLSGDKAFALHDTYGFPIDLTL 415 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGL-GSGTTEKIWFSLKEKYG-ATQFIGY 460 ++ +GLA +D + F + + EQR RA+ + G + + + G +F GY Sbjct: 416 EMAAEQGLA-VDEVGFRRLMNEQRQRAKDDAKAKKGQHRDASAYRQVADSLGRPVEFTGY 474 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D++ T+ S V+ +V G +V A G VE++ D+TPF Sbjct: 475 DVV---------------------TDEAS--VRGLVAAGGVVSSAGPGDDVEIILDRTPF 511 Query: 521 YAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 YAE GGQL D G + +G R+++ DVQ G+ VHHA V G + + +D + Sbjct: 512 YAEGGGQLADQGVIELDNGARVEVRDVQSPVRGLIVHHATVLSGEVSIGLGAHALVDVER 571 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 RR +S +H+ATH++H A LG +Q GS +P RFD + + + + +E V Sbjct: 572 RRSISRSHTATHMVHKAFREALGETATQAGSENSPGRFRFDFSAVGAVPESVMADVEARV 631 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+++ +L V +M++ DA+ SGA AL G KY DRVRVVSV G + LCGGTH Sbjct: 632 NEVVLDDLAVHAEVMSQADAVKSGAMALFGEKYGDRVRVVSV-----GDWARELCGGTHA 686 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 S+G++ ++ ++ ESSI +G+RR+EA+ G A L + + L+ LKV + R Sbjct: 687 GSSGKLGVVKLLGESSIGSGVRRVEALVGSDAYRFLAREHVLVAQLSDTLKVRPEQLPER 746 Query: 760 VEEIWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814 V ++ E+ R+ + + + K+ VN ++H +++++ Sbjct: 747 VHDLVEKLREAEKEIERVRVGQLLAAAGELAAGAAKVGPVNLVAHRADGAGGGDVRTLAL 806 Query: 815 ALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 ++ ++ + G+++++G K A V + E +A +L R + L GG GGG+ Sbjct: 807 DVRGRLPQGEPGVVVVIGAVDGKVAVVAALNDEARARGLSANELVR-AVGPLVGGKGGGK 865 Query: 872 PHMAQSGGPNGNKADQAI 889 +AQ GG + ++ D+AI Sbjct: 866 DDVAQGGGTDASRIDEAI 883 >gi|227891107|ref|ZP_04008912.1| alanyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741] gi|227866981|gb|EEJ74402.1| alanyl-tRNA synthetase [Lactobacillus salivarius ATCC 11741] Length = 917 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 346/931 (37%), Positives = 526/931 (56%), Gaps = 84/931 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+FF+ GH+++ S+ LIP +DPTL++ NSG+ K F G P Sbjct: 38 MKELSSAQIRQMYLDFFKSKGHDVMKSAPLIPHDDPTLLWINSGVATMKKYFDGSVVPKN 97 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T+ QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+LLT Sbjct: 98 HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSPE 153 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD+D+ +LYITVY ED++A K W+++ G+ I DNFW + E GP GP SEIF Sbjct: 154 WFDMDKEKLYITVYPEDKDAKKYWEEV-GVDPSHIYE--AEDNFWDIGE-GPSGPDSEIF 209 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 FD+G+ + P PG E ERY+EIWN+VF +F + LP +IDTGMG Sbjct: 210 FDRGQEMNNLPEDDPESYPGG--ENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMG 267 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLI 286 LER+ +V Q N++ DLF +I+ + +++ K G N V+ +VI DH R+ +F I Sbjct: 268 LERVVSVFQHARTNFETDLFLPIIEKTAELSAGKKYGENAEADVSFKVIADHARAVTFAI 327 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+NEGRGYV+RR++RRA+ + + LG E + L+P + M SAYPE+++ Sbjct: 328 GDGALPSNEGRGYVIRRLIRRAVMHGQKLGIDEAFLYKLVPVVGKIMESAYPEVLEQAEF 387 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++ E++RF TL G+ LLD +++ ++ + L G FKLYDT+G PL++ ++ Sbjct: 388 IEKVIKMEEDRFNDTLKEGMQLLDSLIAETKENGGKELPGKPVFKLYDTYGFPLELTKEY 447 Query: 405 LCARGLAGIDIISFNQALEEQR-----SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 GL +D FN+ +E+Q+ +R+ A S+G+ +G L + ++++G Sbjct: 448 ANDEGL-DVDEEGFNEEMEQQKARARAARSDAKSMGVQNGL-------LTDITTPSEYVG 499 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 Y L+ NGV +K I+ E+V+ + + +V+FD+TP Sbjct: 500 YHELKA--------------------NGV---LKDIIIDNELVDTVPADSRAQVIFDKTP 536 Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + ++ DVQ G +H V + + R E + L +D Sbjct: 537 FYAEMGGQVADKGVIKNQAGEVVAEVEDVQHAPNGQNMHTIHVLKEMTR-ENTYSLEVDV 595 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 ++ NH+ATHLL AL +LGSH Q GS + P LRFD T+ +T+ +LK IED Sbjct: 596 AFHNKVKKNHTATHLLDQALRDVLGSHTHQAGSLVEPTYLRFDFTNLGSVTAEDLKKIED 655 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN I +N+ V T + ++E A GA AL G KY D VRVV V G +S CGGT Sbjct: 656 IVNAKIWENIQVETVVTDKESAEKMGAIALFGDKYGDTVRVVKV-----GDYSMEFCGGT 710 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV++T EI L IVSES + AG+RRIEA+T + A L +++ L+ A LK+ Q V Sbjct: 711 HVANTNEIGLFKIVSESGVGAGVRRIEAVTSEEAFEFLEERNQLLRQSADELKIVQIKEV 770 Query: 758 GR-VEEIWEEYRKLQLIHAKRKLQLNVEDLSC----HKIADVNFMSHIISEVD---SKEL 809 R +E++ E+ + L+ K+ L+ + ++N + I +V+ +L Sbjct: 771 PRKIEQLQEQVKLLE--QQKQALEDKFASQQAGDIFKNVKEINGKTLIAGQVNVSGMSQL 828 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGG 867 + + D ++K S +++L + + K +++ ++ D + + A DL + ++ KV GG Sbjct: 829 RQLADQWKEKQLSDVLVLATATADGKVNLITAISGDAVKEGYKAGDLIKAIAPKVG--GG 886 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGRP +AQ+GG +A+ +L K Sbjct: 887 GGGRPDLAQAGGKKPEGIQEALKAAEDWLNK 917 >gi|42518570|ref|NP_964500.1| alanyl-tRNA synthetase [Lactobacillus johnsonii NCC 533] gi|48428507|sp|P61702|SYA_LACJO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|41582855|gb|AAS08466.1| alanyl-tRNA synthetase [Lactobacillus johnsonii NCC 533] Length = 882 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 348/918 (37%), Positives = 517/918 (56%), Gaps = 81/918 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH ++ S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF QF + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I+ +E+++ G KY N + V ++I DH+R+ SF IADG LP Sbjct: 238 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+P + M S YPE++ + I++ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF TL GL LLD +++ K D+ ++G AFKL+DT+G P ++ + GL Sbjct: 358 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465 ID F++ ++ Q+ RAR L S G+ + ++K+K YG Sbjct: 418 K-IDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 465 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++E L IV ++V++A G+ ++FD+TPFYAE G Sbjct: 466 ---LEEKHAKLID----------------IVVDDKLVDKA-DGEHATLIFDKTPFYAERG 505 Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581 GQ+ D G + L ++TDVQ +H V IL E VL +D + RR Sbjct: 506 GQVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDV---ILPLEKGQEYVLKVDQKRRR 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ S+E VN+ Sbjct: 563 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + + + GA AL G KY D VRVV ++ S+ CGGTH + Sbjct: 623 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760 T +I +L IVSES++ AG RRI A+TG A ++ +DE LK + +K ++ +VV ++ Sbjct: 678 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKI 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814 I ++ R Q + K Q+N DL + I V ++ I ++ D + +L+ + D Sbjct: 738 SSIEDDLRASQKEAEQLKAQINKAKAGDL-FNDIKQVKDLTVIAAQADVEGMNDLRELAD 796 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + +S +++L K V+ + + + A DL + +A + GGGGGGRP+M Sbjct: 797 NWKSSNKSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 855 Query: 875 AQSGGPNGNKADQAIAGV 892 AQ+GG N AIA V Sbjct: 856 AQAGGKNPAGLKDAIAKV 873 >gi|320011910|gb|ADW06760.1| alanyl-tRNA synthetase [Streptomyces flavogriseus ATCC 33331] Length = 889 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 350/923 (37%), Positives = 513/923 (55%), Gaps = 80/923 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP VT+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW LT F Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIEFAWAALTNSVEEGGFG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL+ITVY +D+EA ++W++ G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LDPERLWITVYLDDDEAEQIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ + +E F LP +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSQNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ D + ++ + ++TG++Y + + V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVRYGADQGSDVSLRVVADHVRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RL+G T P++ L+ + MG YPELI + IE Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLMGATGPVVRDLVDVVVDTMGQQYPELITDRKRIETVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F K L G +LD ++ ++L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKALKGGTNILDTAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A + +G + + + ++ G T+F GY + G Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADRSGVTEFTGYASIEG--- 473 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + K++ L +GV S A G +VEVV D+TPFYAE GGQL Sbjct: 474 ---ESKIVGL-----LVDGVPSPA------------ATEGDEVEVVLDRTPFYAEGGGQL 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + G +Q+ DVQ+ G+ VH V+ G + S ID RR ++ H Sbjct: 514 ADQGRIKLDSGAVIQVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDNTRRRAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS +P RFD + L +E +N+++++ L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQKINEVLSREL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ +DA GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVQAEVMSIDDAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + L LK GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELLK-------GRPEELPEKI 741 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKI-----------ADVNFMSHIISEVD----SKELKSV 812 ++ + + +E K+ DV ++ + +V + +L+ + Sbjct: 742 SG--MLGKLKDAEKEIEKFRAEKVLAAAAGLVESAKDVRGVALVTGQVPDGTTADDLRKL 799 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869 + ++ +IQ G +V + L V+ + R A DL R +AK L GGGGG Sbjct: 800 VLDVRGRIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGG 858 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+P +AQ GG N + A+A V Sbjct: 859 GKPDVAQGGGQNPDAIGDAVAAV 881 >gi|302345784|ref|YP_003814137.1| alanine--tRNA ligase [Prevotella melaninogenica ATCC 25845] gi|302149231|gb|ADK95493.1| alanine--tRNA ligase [Prevotella melaninogenica ATCC 25845] Length = 887 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 338/935 (36%), Positives = 510/935 (54%), Gaps = 94/935 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G + P + T Sbjct: 3 ANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRRTD 62 Query: 64 VQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L LD Sbjct: 63 SQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVLHLD 122 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + LY+TV++ D+EA W+K + I+ +DNFW M +TGPCGPCS Sbjct: 123 PKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCGPCS 180 Query: 174 EIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + E +PG +++ + IEIWN+VFMQF ++ L IDTGMG Sbjct: 181 EIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLDPLKMHVIDTGMG 240 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVNHRV 274 ER+ ++Q K +NYD D+F +I E+++G KY EG+N + RV Sbjct: 241 FERLVRLMQGKNSNYDTDIFAPVIAEIEKISGKKYNHTFPEGDNGEGINEEQKVDIAMRV 300 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM 333 + DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG E M LL L EM Sbjct: 301 VADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLVREM 360 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKL 390 G+AYPEL + LI ++ E++ F +TL++G++LL+G + L G+ + L+G AF+L Sbjct: 361 GTAYPELTAQRELIGRVMKEEEDSFLRTLEKGIMLLNGAMDELKAHGQTQ-LDGKEAFRL 419 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 +DT+G PLD+ + ++CA +D FN+ +E+Q++RAR ++ + +G W L+E Sbjct: 420 FDTYGFPLDLTE-LICAENGYTVDEKQFNEEMEQQKARAR-NAAAVENGD----WEVLRE 473 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 G +F+GYD + RKV +K Sbjct: 474 --GEQEFVGYDYTEYECHILRYRKVTQKKNSF---------------------------- 503 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 E+V D TPFY E GGQ+GD G + + + + D K+ VH IV+ E Sbjct: 504 YELVLDYTPFYGEMGGQVGDQGVLVSEDETINVIDT-KRENNQSVH--IVKELPKNLEAD 560 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +D + R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + IT Sbjct: 561 FMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKITDE 620 Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 621 ELRQVEKLVNEMIRKDYPMDEHRDTPMEEAKKMGAVALFGEKYGDKVRVVRFG------P 674 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF- 748 S CGG H +STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L S Sbjct: 675 SCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLKSMF 734 Query: 749 -----LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803 LK V + I +E + R + VE + V+ + ++ Sbjct: 735 NNAKDLKAVLTKFVEENDSIKKELESFRAQAVSRAAKNMVE--HAETVNGVHIVKTVLP- 791 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAK 861 +D K ++ +++ + ++ ++G E + + I++++D++ + NA + R +AK Sbjct: 792 IDPASAKDIVFKVREALPEKLVCVLGSVYENRPLLSIMLSDDMVKDYDLNAGKIIREAAK 851 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++ GGGGG+PH AQ+GG N + A+ V + Sbjct: 852 LI-QGGGGGQPHYAQAGGKNADGIRSAVDKVIELI 885 >gi|299148308|ref|ZP_07041370.1| alanine--tRNA ligase [Bacteroides sp. 3_1_23] gi|298513069|gb|EFI36956.1| alanine--tRNA ligase [Bacteroides sp. 3_1_23] Length = 872 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 348/927 (37%), Positives = 511/927 (55%), Gaps = 96/927 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD + GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++I FN+ +++Q+ RAR ++ + +G W LKE G T+F+GY Sbjct: 418 LILRENGMT-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WIVLKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVVDT-KKENNLPIH--ITKKLPDHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVV----SVEYEDGGVHSSALCG 695 I N+P+ R + E+A GA AL G KY DRVRV+ S+E+ CG Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFGTSIEF----------CG 666 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQG 754 GTHV++TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F Sbjct: 667 GTHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDL 726 Query: 755 NVVGR--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 + R +++ E++ K + K +L N++++ H I V F + + +EV Sbjct: 727 GIAIRKYLDENAGLKKQVEDFMKEKEAALKERLLKNIQEI--HGIKVVKFCAPLPAEV-- 782 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 +K++ L+ +I + + G K + ++++++L+ A +L + +AK++ Sbjct: 783 --VKNIAFQLRGEITENLFFVAGNIDNGKPMLTVMLSDNLVASGLKAGNLVKEAAKLI-Q 839 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+PH A +GG N + A+ V Sbjct: 840 GGGGGQPHFATAGGKNTDGLPAAVEKV 866 >gi|268318981|ref|YP_003292637.1| hypothetical protein FI9785_490 [Lactobacillus johnsonii FI9785] gi|262397356|emb|CAX66370.1| alaS [Lactobacillus johnsonii FI9785] Length = 882 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 348/918 (37%), Positives = 517/918 (56%), Gaps = 81/918 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH ++ S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF QF + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I+ +E+++ G KY N + V ++I DH+R+ SF IADG LP Sbjct: 238 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+P + M S YPE++ + I++ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGQCLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF TL GL LLD +++ K D+ ++G AFKL+DT+G P ++ + GL Sbjct: 358 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465 ID F++ ++ Q+ RAR L S G+ + ++K+K YG Sbjct: 418 K-IDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 465 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++E L IV ++V++A G+ ++FD+TPFYAE G Sbjct: 466 ---LEEKHAKLID----------------IVVDDKLVDKA-DGEHATLIFDKTPFYAERG 505 Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581 GQ+ D G + L ++TDVQ +H V IL E VL +D + RR Sbjct: 506 GQVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDV---ILPLEKGQEYVLKVDQKRRR 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ S+E VN+ Sbjct: 563 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + + + GA AL G KY D VRVV ++ S+ CGGTH + Sbjct: 623 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760 T +I +L IVSES++ AG RRI A+TG A ++ +DE LK + +K ++ +VV ++ Sbjct: 678 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKI 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814 I ++ R Q + K Q+N DL + I V ++ I ++ D + +L+ + D Sbjct: 738 SSIEDDLRASQKEAEQLKAQINKAKAGDL-FNDIKQVKDLTVIAAQADVEGMNDLRELAD 796 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + +S +++L K V+ + + + A DL + +A + GGGGGGRP+M Sbjct: 797 NWKSSNKSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 855 Query: 875 AQSGGPNGNKADQAIAGV 892 AQ+GG N AIA V Sbjct: 856 AQAGGKNPAGLKDAIAKV 873 >gi|288927362|ref|ZP_06421209.1| tRNA ligase [Prevotella sp. oral taxon 317 str. F0108] gi|288330196|gb|EFC68780.1| tRNA ligase [Prevotella sp. oral taxon 317 str. F0108] Length = 872 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 333/903 (36%), Positives = 494/903 (54%), Gaps = 75/903 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +F +FF+ GH++ S+ ++ +DPTLMFTN+GM +K+I G P + Sbjct: 3 ANEIRDSFKQFFEGKGHKIEASAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRRRAD 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK AI AW+ L L+ + Sbjct: 63 SQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKREAIDYAWEYLVDVLHLNPQ 122 Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 LY+TV++ D+EA + W K L AD II +DNFW M ETGPCGPCSEI Sbjct: 123 DLYVTVFEGSEEEGIPRDDEAAEYWSK--HLPADHIINGNKHDNFWEMGETGPCGPCSEI 180 Query: 176 FFDQGECIPGG-LPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 D +PG+S ++ + IEIWN+VFMQF +++ LP IDTGMG E Sbjct: 181 HLDSRSAKEKAEVPGASLVNKDNPQVIEIWNIVFMQFNRKSDGSLQPLPMHVIDTGMGFE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289 R+ LQ KT+NYD D+F+ +IQ Q++G+KY + V+ RVI DHLR+ +F IADG Sbjct: 241 RLVRSLQGKTSNYDTDVFQPVIQEISQLSGLKYGEDEKVDVAMRVIADHLRAVAFSIADG 300 Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP N GYV+RRI+RRA+ YA LG M LLP EMG AYPEL + LI Sbjct: 301 QLPGNAKAGYVIRRILRRAVRYAYTFLGQRSAFMFKLLPTFIHEMGEAYPELKAQRELIG 360 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 ++ E++ F +TL++G+ +L+ + L + L+G AF+L+DT+G PLD+ + ++C Sbjct: 361 RVMKEEEDAFLRTLEKGISMLNDEMERLKAEGKTTLDGTQAFRLFDTYGFPLDLTE-LIC 419 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D F+ +++Q+ RAR + W L+E G F+GYD Sbjct: 420 RENGLQVDAAQFDVEMQKQKERARN-----AAAVENSDWVVLRE--GEQNFVGYDYTEYE 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + R+V +K E+V D TPFY E GG Sbjct: 473 CRILRYRQVTQKK----------------------------NTYFELVLDNTPFYGEMGG 504 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + + I D K+ +H IV+ + + +D R + N Sbjct: 505 QVGDCGVLVNGEETVDIIDT-KRENNQSIH--IVKALPKDPKADFMACVDTDKREASAAN 561 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLL +AL +LG HV Q GS + PD LRFD +H + +T EL+ +E VND+I Q+ Sbjct: 562 HTATHLLDYALKAVLGEHVEQKGSLVAPDTLRFDFSHFQKVTDEELREVERLVNDLIRQD 621 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LP+ R E+A A GA AL G KY D VRVV S CGG H STG I Sbjct: 622 LPLDEHRNTPLEEAKAMGAVALFGEKYGDTVRVVRFG------PSCEFCGGIHARSTGRI 675 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + IVSESS+ +G+RR+EA+TG+R + ++ ++ + + ++ ++ G + + E Sbjct: 676 GMFKIVSESSVASGVRRVEALTGKRCEEAMYALEDTIRGIRNLFNNAK-DLQGVIAKYME 734 Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIA---DVNFMSHI--ISEVDSKELKSVMDALQKKI 820 E+ ++ K Q VE L +A DVN + + + +++++ K+++ +++ I Sbjct: 735 EHDAMRKEIEKFSAQA-VERLKDSLVANAKDVNGLKVVKAVLPINAEQAKNLVFKVREAI 793 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 ++ +VG + K + I+ ++D++ NA + R +AK++ GGGGG+PH A +G Sbjct: 794 PQHLVCVVGSTANDKPLLSIMFSDDVVSEHGLNAGQIIREAAKLI-QGGGGGQPHYASAG 852 Query: 879 GPN 881 G N Sbjct: 853 GKN 855 >gi|288871667|ref|ZP_06118467.2| alanine--tRNA ligase [Clostridium hathewayi DSM 13479] gi|288862560|gb|EFC94858.1| alanine--tRNA ligase [Clostridium hathewayi DSM 13479] Length = 813 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 326/847 (38%), Positives = 482/847 (56%), Gaps = 48/847 (5%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT QKC+R Sbjct: 2 FLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTTCQKCIRT 61 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130 G D++NVG+T RH TFFEMLGNFSFG YFK AI+ +W+ LT+ LD RLY +VY Sbjct: 62 G----DIENVGKTARHGTFFEMLGNFSFGDYFKTEAIRWSWEFLTEVVGLDPDRLYPSVY 117 Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190 ED+EAF +W K G++ ++I R DNFW GPCGPCSEI++D+GE G PG Sbjct: 118 LEDDEAFDIWNKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPGC 176 Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248 + E +RY+E+WN VF QFE L + +IDTGMGLER+A V+Q+ + +D+D Sbjct: 177 TVGCECDRYMEVWNNVFTQFENDGHGNYEELAQKNIDTGMGLERLAVVVQDVDSIFDVDT 236 Query: 249 FKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306 K L+ ++ +Y+ + V+ R+I DH+RS +F+I+DGI+P+NEGRGYVLRR++R Sbjct: 237 IKALLNRVAELARTEYQKDASVDVSLRLITDHVRSCTFMISDGIMPSNEGRGYVLRRLLR 296 Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366 RA + RLLG + L + YPEL + K +I + L E+++F +T+D+GL Sbjct: 297 RAARHGRLLGIEGRFLAELSRTVIELSKDGYPELEEKKAMILKVLTEEEDKFNRTIDQGL 356 Query: 367 VLLDGV---LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +L + +S GK +L+G+ AFKLYDT+G PLD+ ++IL + + ID F +A++ Sbjct: 357 AILSEMEEQMSAAGKT-VLSGEDAFKLYDTYGFPLDLTREILEEKHFS-IDEDGFKKAMQ 414 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQR +ARA + + + T+F+GYD +++C Sbjct: 415 EQREKARAARKTTNYMGADVTVYQSIDPALTTEFVGYD------------RLVC------ 456 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S + A+ + ++VE G+ +V ++T FY GGQ GD G + + Sbjct: 457 -----DSKITALTTETDLVEALTDGETGTIVTEETCFYGTMGGQQGDKGVIVSANGEFSV 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 D G H +++G+ + + L + ++R NHSATHLL AL T+LG Sbjct: 512 EDTIHLQGGKVGHVGKMKKGMFQIGDVVTLKVCEESRMNTGKNHSATHLLQKALRTVLGE 571 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q GS + D LRFD TH +T E+K +E VN+ I + L V T +M+ ++A SG Sbjct: 572 HVEQAGSYVDEDRLRFDFTHFSAMTPEEIKKVECLVNEKIKEALNVKTEVMSLDEAKKSG 631 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY + VRVV + G S+ LCGGTH+S+TG I I+SE+ I AG+RRI Sbjct: 632 AMALFGEKYGENVRVVKM-----GDFSTELCGGTHISNTGVIGSFKILSETGIAAGVRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+TG + + +L A K + + R+E + EE + L + K K +L Sbjct: 687 EALTGDGLMKYYQEAETELHEAAKAAKATPQTLAARIEAMLEEIKTLHSENEKLKSRLAK 746 Query: 784 EDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 + L +I V ++ +VD L+++ D L+ K+ G+I+L + + K ++ Sbjct: 747 DSLGDVMDQVKEIGGVKVLAAKADDVDMNGLRNLGDQLKDKLGEGVIVLASVL-DGKVNL 805 Query: 839 LIVVTED 845 + TE+ Sbjct: 806 MATATEE 812 >gi|17229910|ref|NP_486458.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120] gi|20532251|sp|Q8YUD4|SYA_ANASP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|17131510|dbj|BAB74117.1| alanyl-tRNA synthetase [Nostoc sp. PCC 7120] Length = 880 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 350/910 (38%), Positives = 521/910 (57%), Gaps = 61/910 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IRT FL+F+ + GH++L S+SL+P DPT++ T +GM+PFK IF GQ P ++ TT Sbjct: 11 NEIRTRFLDFYAQRGHQILASASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPEFKRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RH TFFEMLGNFSFG YFKE+AI W++ T+ F L + R Sbjct: 70 QKCIRT----NDIENVGRTKRHQTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPKER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V++ED+EA+ +W+ G++ +I R+ +DNFW TGPCGPCSEI++D Sbjct: 126 LVVSVFEEDDEAYAIWRDQIGVTEARIKRMGADDNFWVSGPTGPCGPCSEIYYD-FHPER 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + L +IDTGMGLER+ +LQ NNY Sbjct: 185 GDDNIDLEDDTRFIEFYNLVFMQYNRDASGNLTPLQNKNIDTGMGLERITQILQRVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + ++ G+ Y ++ V+ +VI DH+RS +IAD I +N GRGYVL Sbjct: 245 ETDLIFPIIETAAKIAGIDYHSSDESTKVSLKVIGDHVRSVVHMIADEIRASNVGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + + SAYP + Q + +I+ L E+ F KT Sbjct: 305 RRLIRRVVRHGRLIGISGEFINQVAETAIALSESAYPNVRQRETVIKAELEREEANFLKT 364 Query: 362 LDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 LDRG LL +++ + K +++G AF LYDTHG PL++ Q+I L +D+ F Sbjct: 365 LDRGEKLLAEIIAEVKKQGKTVISGKDAFTLYDTHGFPLELTQEIAEENNLT-VDVEGFQ 423 Query: 420 QALEEQRSRAR-AH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 + +E Q+ R AH ++ L T + L E AT+FIGY + Sbjct: 424 KQMEIQQQGGRGAHETIDL---TVQGSLDKLAEHIHATEFIGY-----------SQATAT 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 K + L +GV + EEA +G +V++V D+TPFYAE+GGQ+GD G GD Sbjct: 470 AKVEVLLVDGV------------VQEEAEAGTEVQIVLDETPFYAESGGQIGDRGYISGD 517 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 GI +Q+ DV+K+++ FVH +ERG LR ++ ID RR+ NH+ATHLL AL Sbjct: 518 GIVVQVEDVKKESD-FFVHFGRIERGTLRVGDNVTAQIDRAGRRRAQANHTATHLLQAAL 576 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 TI+ +SQ GS ++ D LRFD + +T E++ +E+ +N IA+ ++ Sbjct: 577 KTIVDGGISQAGSLVSFDRLRFDFNSPRGLTVEEIQQVEEQINTWIAEAHSAKIELLPLA 636 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY D VRV+ GV S LCGGTHVS+T EI + I+SE+ + Sbjct: 637 EAKARGAVAMFGEKYGDEVRVIDFP----GV-SMELCGGTHVSNTAEIGVFKIISEAGVA 691 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--------- 768 +G+RRIEA++G +L +D+ +K L+ KV + R+ + E R Sbjct: 692 SGVRRIEAVSGLAVLDYLNVRDKVVKDLSDRFKVKPEELPERITTLQNELRTTEKQLETL 751 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K QL AK L D +C D + + VD + LKS + L +KI +G ++L Sbjct: 752 KGQLAIAKSDSLLQTAD-TC---GDYKIIVAQLEGVDPESLKSAAERLLQKIGNGAVVLG 807 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K S++ + ++ + A AK+ GGGGGGRP++AQ+GG + +K Sbjct: 808 SVPEADKVSLVAAFSPEVNKKGLQAGKFIGAIAKIC-GGGGGGRPNLAQAGGRDASKLPA 866 Query: 888 AIAGVASFLK 897 A+ S LK Sbjct: 867 ALEQAQSELK 876 >gi|260663392|ref|ZP_05864283.1| alanyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN] gi|260552244|gb|EEX25296.1| alanyl-tRNA synthetase [Lactobacillus fermentum 28-3-CHN] Length = 882 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 330/922 (35%), Positives = 506/922 (54%), Gaps = 77/922 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR +L+FF ++GH +PS SL+P NDPTL++ NSG+ KN F G+ P +T Sbjct: 8 NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RHHT FEM+GNFS G YFK+ AI AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A + W +G+ D ++ DNFW + + GP GP +E+F+D+G Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHLL--ADQDNFWDIGQ-GPSGPDTEVFYDRG 179 Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + + P PG E ERY+EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 180 QEMNNLPEDDPESYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERV 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290 ++ + N++ DLF LI+ E + K G N V ++I DH+RS +F I DG Sbjct: 238 VSIFENAKTNFETDLFMPLIKQVEVFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGA 297 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYV+RR++RR++ + LG EP + ++P + M YP++++ I Sbjct: 298 LPSNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASV 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + SE++RF TL+ GL LL+ V+ + + ++G AFKLYDT+G P+++ ++ Sbjct: 358 ISSEEDRFSATLNGGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADE 417 Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F A+ EQ++RAR A + G G +W + ++ ++++GY + Sbjct: 418 GLT-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTDE---SKYVGY-----TD 468 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + ++ KV+ + G+ ++A GQ+V+V+FDQTPFYAE GGQ Sbjct: 469 LVVDNAKVI-----------------GLAADGKQADQAEPGQQVDVIFDQTPFYAEMGGQ 511 Query: 528 LGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 + DTG I + + + DVQ + H + ++ L +D ++ Sbjct: 512 VADTGQVIDNYGKVVATVKDVQHAPHQQNL-HTLELTAPIKKGARYKLVVDRARHLKIEK 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL +LG H Q GS + LRFD H +T +LK +ED VN+ I + Sbjct: 571 NHTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWK 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL KY D+VRVV + G ++ CGG HV +T EI Sbjct: 631 EIPVTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEI 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L IVSE + AG+RRIEA+T A + + + + L +A+ LKV+Q V RV E+ Sbjct: 686 GLFKIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQ 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-------IISEVD---SKELKSVMD 814 + QL A ++ + L+ + DV + I +EV +L+ + D Sbjct: 746 D-----QLKEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMAD 800 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 ++K S +++L + + KA++L+ V + L A DL + A + GGGGGRP + Sbjct: 801 DWRQKDYSDVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAI-NGGGGGRPTL 858 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 AQ+GG N +A+ + F+ Sbjct: 859 AQAGGKNPAGISEALKLASQFM 880 >gi|153807409|ref|ZP_01960077.1| hypothetical protein BACCAC_01688 [Bacteroides caccae ATCC 43185] gi|149129771|gb|EDM20983.1| hypothetical protein BACCAC_01688 [Bacteroides caccae ATCC 43185] Length = 872 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 344/923 (37%), Positives = 509/923 (55%), Gaps = 88/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAVMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD + GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMEDTKAAGKIEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ +++ FN +++Q+ RAR ++ + +G W +LKE G T+F+GY Sbjct: 418 LILRENGMT-VNLEEFNAEMQQQKQRAR-NAAAIETGD----WITLKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E + ++ R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPFMACVNTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV Sbjct: 617 ARIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ--GNVV 757 ++TG I ++ IVSESS+ AG+RRIEA TG R L + L L + + G + Sbjct: 671 AATGNIGMVKIVSESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNTPDLGIAI 730 Query: 758 GR-------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 + +++ E++ K + K +L N++++ H I + F + + +EV +K Sbjct: 731 RKYLEENAGLKKQVEDFMKEKEAALKERLLKNIQEI--HGIKVIKFCAPLPAEV----VK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G + K + ++++++L+ A +L + +AK++ GGGG Sbjct: 785 NIAFQLRGEITENLFFVAGSTDAGKPMLTVMISDNLVAGGLKAGNLVKEAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + A+ V Sbjct: 844 GQPHFATAGGKNADGLPAAVEKV 866 >gi|227510197|ref|ZP_03940246.1| alanine--tRNA ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190402|gb|EEI70469.1| alanine--tRNA ligase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 887 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 346/924 (37%), Positives = 516/924 (55%), Gaps = 85/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 14 SQIRQMFLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKNPRMTSS 73 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ AI A++LLT K F D+ Sbjct: 74 QKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPKWFGWDK 129 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D +A K W+ + G+S D II I DNFW + + GP GP SEIF+D+G Sbjct: 130 DKLYMTVYPKDTDAKKYWEAV-GVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIFYDRGAD 185 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E +R++E+WN+VF QF + LP+ +IDTGMGLER+ + Sbjct: 186 FDELAPDDPENYPGG--ENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLERVVS 243 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292 + Q N++ DLF +I+ +E + K G N V R+I DH R+ + I DG LP Sbjct: 244 IFQHAKTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGDGALP 303 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RRA+ + LG + L P + + S YPE+++ + IE+ +R Sbjct: 304 SNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPEVLEQRDYIEKVIR 363 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE++RF +TL GL LL V++ K+EI +G AFKLYDT+G P ++ ++ G Sbjct: 364 SEEDRFNETLADGLKLLHDVIADTKAESKNEI-DGPTAFKLYDTYGFPYELTKEEASEVG 422 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L G+D F + +Q+ RAR G S G + +K+ ++++GYD L Sbjct: 423 L-GVDKQGFEVEMHKQKERARNARSGAKSMGVQRDLLVKVKDD---SEYVGYDTLD---- 474 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +D K++ IV+ ++V E+ +EV+FD+TPFYAE GGQ+ Sbjct: 475 -VKDAKLI-----------------DIVENEKLVSES-KADTIEVIFDKTPFYAEMGGQV 515 Query: 529 GDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV------LTIDYQN 579 D G + GD + + DVQ G +H ++T+ SLV L +D Sbjct: 516 ADRGVILDENGDKV-ADVIDVQHAPNGQNIH-------TIKTQESLVKGQRYHLVVDKLF 567 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 ++ NH+ATHLL +L +LG H Q GS + P LRFD H +T +L+ +E V Sbjct: 568 HSRVEKNHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMV 627 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I + + V T + + + GA AL KY D+VRVVS+ G S CGGTHV Sbjct: 628 NKQIFKEIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHV 682 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 +T +I L IVSES + AG+RRIEA+T + A L Q +LK ++ LKV+Q +V Sbjct: 683 KNTRDIGLFKIVSESGVGAGVRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPT 742 Query: 759 RVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHK--IADVNFMSHIISEVDSKELKSVM 813 RVE++ +E + L+ + +L E + HK ++ II + +L+ + Sbjct: 743 RVEQLQDEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLT 802 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRP 872 D + K S +++L G +KA++++ V+++ + D A DL + A + GGGGGRP Sbjct: 803 DTWRSKRLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNI-KGGGGGRP 860 Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896 +MAQ+GG + + D+A+ +L Sbjct: 861 NMAQAGGKDPSGLDKAMKAAVEWL 884 >gi|170758241|ref|YP_001787882.1| alanyl-tRNA synthetase [Clostridium botulinum A3 str. Loch Maree] gi|205830034|sp|B1KXB7|SYA_CLOBM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169405230|gb|ACA53641.1| alanine--tRNA ligase [Clostridium botulinum A3 str. Loch Maree] Length = 879 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 336/916 (36%), Positives = 526/916 (57%), Gaps = 68/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L + Sbjct: 66 CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI F++G Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFNRG--- 177 Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G +SEE ++ +E WNLVF QF++ + L +IDTGMGLERMAT++ Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295 Q +++D K ++ +++G Y+ + + ++ R+I DH+RS +F+I+DGILP+NE Sbjct: 237 QNVDTIFEVDTIKAVLDKVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ Sbjct: 297 GRGYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKREYIKKIIKLEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T+D G+ +L+ + + + ++L+GD AFKLYDT+G P+++ ++IL G++ I Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNYKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415 Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 D FN+ ++EQR RAR+ + +G KI ++ T F GYD L Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFEGYDKLE---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V S V I++ E E G + +V TPFYAE GGQ+ Sbjct: 467 -------------------VKSKVAVIIKDEEFKNEIEKGNEGVIVTYNTPFYAEMGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG D + ++ D +K G +H + G + E ++L ++ R + NH+ Sbjct: 508 GDTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEGRRNNIRKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T++MN E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + Sbjct: 628 VNTKVMNIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766 +VSE+ + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + Sbjct: 683 KVVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ ++ K KL ED + I + V S + ++D L+ + D ++ +QSG Sbjct: 743 EKEKEIEALKLKLASGAEDEILNNIKEIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881 +++L G + + K + + T+D + + V ++ +V + GGGGGGRP MAQ+GG + Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVASIAGGGGGGRPDMAQAGGKD 859 Query: 882 GNKADQAIAGVASFLK 897 NK + AI V + ++ Sbjct: 860 PNKLEDAIKTVETVVE 875 >gi|33860604|ref|NP_892165.1| alanyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|41018179|sp|Q7V3N0|SYA_PROMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33633546|emb|CAE18503.1| Alanyl-tRNA synthetase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 886 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 329/909 (36%), Positives = 520/909 (57%), Gaps = 80/909 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL F+ + H+++PS+SLIP +DPT+M T +GM+PFK +F G +E+P +A T+ Q Sbjct: 15 IRKEFLNFYHEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVG T RHHTFFEMLGNFSFG YFK+ AI+ AW+L+T + L + Sbjct: 73 KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIEWAWELVTDIYGLSAENI 128 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++V+ ED+++ K+WK+ G+ +II++ DNFWS +TGPCGPCSE++FD + G Sbjct: 129 IVSVFHEDDDSVKIWKEDIGIHPKRIIKLGEKDNFWSSGKTGPCGPCSELYFD-FKPEKG 187 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 E+G+R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+K NNY+ Sbjct: 188 VQNIDLEDGDRFIEFYNLVFMQYNRDPDGQLTDLKYKNIDTGMGLERMAQILQKKKNNYE 247 Query: 246 IDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DL +IQ + +++ + Y + ++ ++I DH+R+ LI+DG++ +N GRGY+LR Sbjct: 248 TDLIFPIIQKASEISKIDYYSSGERTKISLKIIGDHIRAVIHLISDGVIASNLGRGYILR 307 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RR + + RLLG + L M YP+L I ++ E+ RF +TL Sbjct: 308 RLIRRMVRHGRLLGLKNEFLSKLASVGIKLMQENYPDLKNNCDHILSEIKIEEIRFRETL 367 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RG LLD ++S K ++ G AF+LYDT+G PL++ ++I + G+D+ F++ + Sbjct: 368 ERGEKLLDELISSGQK--MITGFKAFELYDTYGFPLELTEEIAQENNI-GVDVKGFDKEM 424 Query: 423 EEQRSRARAHS----LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 Q+ RA+A S L L +I + + T F GYD L Sbjct: 425 SAQKERAKAASQIIDLTLEGSLEREI-----DLFDKTLFNGYDSLDS------------- 466 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + +K I + +V++A GQKV +V DQT FY E+GGQ+GD G + + Sbjct: 467 ----------DAEIKGIFLESTLVKQASEGQKVLIVLDQTSFYGESGGQVGDIGTILSND 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + + +V +K + +F+H+ IV++GIL + ++ R + + NH+ATHLL AL Sbjct: 517 LEVVVDNVIRK-KNVFLHYGIVKKGILSLGQKVKTKVNDLARAKAAANHTATHLLQSALK 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ++ V Q GS + + LRFD SKPIT ++ +E VN I +N + + M + + Sbjct: 576 VVVNESVGQKGSLVAFNKLRFDFNSSKPITKDQIFKVETLVNSWILENHSLNIKNMAKSE 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA A+ G KY+D VRVV V S LCGGTHV +T E+ I+SE I A Sbjct: 636 ALERGAVAMFGEKYDDEVRVVDVPSV-----SMELCGGTHVKTTSELGCFKIISEEGISA 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA++GQ A + ++ + L LK + ++ RV + E LI+ ++ Sbjct: 691 GVRRIEALSGQSAFEYFSDKNSLVSQLCDLLKANPNQLLDRVNSLQSE-----LINKNKE 745 Query: 779 LQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSV----MDALQKKIQSGIIML 827 +Q ++++ K + V S IIS++D + S+ +D K +++L Sbjct: 746 IQKMKDEIAYFKYSSLSSSANKVGLFSLIISQLDGLDGNSLQSAALDLTSKLGDKSVVIL 805 Query: 828 VGISKEKKASVLIVVT--EDLLDRFNAV-----DLARLSAKVLGGGGGGGRPHMAQSGGP 880 GI ++ +L VV+ EDL+ R D++R+ + GGGGG+P+ AQ+G Sbjct: 806 GGIPDKENRKLLFVVSFGEDLVKRGMHAGKLINDISRICS-----GGGGGKPNFAQAGAK 860 Query: 881 NGNKADQAI 889 + +K + A+ Sbjct: 861 DIDKLNDAL 869 >gi|60680248|ref|YP_210392.1| alanyl-tRNA synthetase [Bacteroides fragilis NCTC 9343] gi|81316682|sp|Q5LHE6|SYA_BACFN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|60491682|emb|CAH06434.1| putative alanyl-tRNA synthetase [Bacteroides fragilis NCTC 9343] Length = 872 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 349/923 (37%), Positives = 506/923 (54%), Gaps = 88/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M R +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV+ + D EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI+A Q+ G +Y N N + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ +++ F+ +++Q+ RAR ++ + +G W LKE G T+F+GY Sbjct: 418 LILRENGMT-VNVEEFDAEMQQQKQRAR-NAAAIETGD----WIILKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + + Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T EL+ +E VN Sbjct: 557 AACAANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV Sbjct: 617 AKIRANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758 ++TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F V Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNTPDLGVAI 730 Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 R +++ E++ K + K +L NV++++ K+ + F + +EV +K Sbjct: 731 RKYIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKV--IKFCLPMPAEV----VK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G K + ++++++L+ A +L + +AK++ GGGG Sbjct: 785 NIAFQLRGEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + + A+ V Sbjct: 844 GQPHFATAGGKNPDGLNAAVEKV 866 >gi|116629092|ref|YP_814264.1| alanyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323] gi|238853835|ref|ZP_04644200.1| alanine--tRNA ligase [Lactobacillus gasseri 202-4] gi|282852129|ref|ZP_06261486.1| alanine--tRNA ligase [Lactobacillus gasseri 224-1] gi|311111122|ref|ZP_07712519.1| alanine--tRNA ligase [Lactobacillus gasseri MV-22] gi|122273910|sp|Q045P6|SYA_LACGA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116094674|gb|ABJ59826.1| alanyl-tRNA synthetase [Lactobacillus gasseri ATCC 33323] gi|238833530|gb|EEQ25802.1| alanine--tRNA ligase [Lactobacillus gasseri 202-4] gi|282556693|gb|EFB62298.1| alanine--tRNA ligase [Lactobacillus gasseri 224-1] gi|311066276|gb|EFQ46616.1| alanine--tRNA ligase [Lactobacillus gasseri MV-22] Length = 882 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 343/918 (37%), Positives = 517/918 (56%), Gaps = 81/918 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF QF + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I+ +E+++ G KY N + V ++I DH+R+ SF IADG LP Sbjct: 238 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+P + M S YPE++ + I++ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF TL GL LLD +++ K D+ ++G AFKL+DT+G P ++ + GL Sbjct: 358 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTVSGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465 +D F++ ++ Q+ RAR L S G+ + ++K+K YG Sbjct: 418 K-VDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 465 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++E L IV ++V++A G+ ++FD+TPFYAE G Sbjct: 466 ---LEEKHAKLID----------------IVVNDKLVDKA-DGEHATLIFDKTPFYAERG 505 Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581 GQ+ D G + L ++TDVQ +H + IL E +L +D + RR Sbjct: 506 GQVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDI---ILPLEKGQEYILKVDQKRRR 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ Sbjct: 563 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIANVEKIVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + + + GA AL G KY D VRVV ++ S+ CGGTH + Sbjct: 623 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760 T +I +L IVSES++ AG RRI A+TG A ++ +DE LK + +K ++ +V ++ Sbjct: 678 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVTNKI 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814 + E+ R Q + K Q+N DL + + V ++ I ++ D + +L+ + D Sbjct: 738 SSLEEDLRASQKEAEQLKAQINKAKAGDL-FNDVKQVKGLTVIAAQADVEGMNDLRELAD 796 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + +S +++L K V+ + + + A DL + +A + GGGGGGRP+M Sbjct: 797 NWKSSDKSDVLVLAAEVNGKANMVISLNDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 855 Query: 875 AQSGGPNGNKADQAIAGV 892 AQ+GG N AIA V Sbjct: 856 AQAGGKNPAGLKDAIAKV 873 >gi|53712054|ref|YP_098046.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46] gi|253563907|ref|ZP_04841364.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5] gi|265765389|ref|ZP_06093664.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16] gi|59798506|sp|Q64YB4|SYA_BACFR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|52214919|dbj|BAD47512.1| alanyl-tRNA synthetase [Bacteroides fragilis YCH46] gi|251947683|gb|EES87965.1| alanyl-tRNA synthetase [Bacteroides sp. 3_2_5] gi|263254773|gb|EEZ26207.1| alanyl-tRNA synthetase [Bacteroides sp. 2_1_16] Length = 872 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 349/923 (37%), Positives = 506/923 (54%), Gaps = 88/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M R +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV+ + D EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI+A Q+ G +Y N N + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ +++ F+ +++Q+ RAR ++ + +G W LKE G T+F+GY Sbjct: 418 LILRENGMT-VNVEEFDAEMQQQKQRAR-NAAAIETGD----WIILKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + + Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T EL+ +E VN Sbjct: 557 AACAANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV Sbjct: 617 AKIRANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758 ++TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F V Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDLGVAI 730 Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 R +++ E++ K + K +L NV++++ K+ + F + +EV +K Sbjct: 731 RKYIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKV--IKFCLPMPAEV----VK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G K + ++++++L+ A +L + +AK++ GGGG Sbjct: 785 NIAFQLRGEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + + A+ V Sbjct: 844 GQPHFATAGGKNPDGLNAAVEKV 866 >gi|300784619|ref|YP_003764910.1| alanyl-tRNA synthetase [Amycolatopsis mediterranei U32] gi|299794133|gb|ADJ44508.1| alanyl-tRNA synthetase [Amycolatopsis mediterranei U32] Length = 886 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 333/915 (36%), Positives = 507/915 (55%), Gaps = 59/915 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I FL F+ GH +PS+ LI +DP L+F N+GMV FK F G+ P Y T Sbjct: 2 DTHEITDRFLRHFEGRGHTRVPSAPLI-LDDPNLLFVNAGMVQFKPYFLGEAPPPYPRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKCVR D+D VG+T RH+TFF+M GNFSFG YFKE AI+ AW+L+TK Sbjct: 61 SVQKCVRT----PDIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAIEAAWELITKPQTEGG 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F LD R++ TVY++D EA LW+K++GL ++I DN+W M GP GPCSEI++ Sbjct: 117 FGLDPERIWATVYNDDSEAAGLWRKLTGLPGERIQARDGKDNYWDMGVPGPGGPCSEIYY 176 Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLE 231 D+G G G + +RYIEIWNLVFMQ + + + LPK +IDTGMG+E Sbjct: 177 DRGPAY-GREGGPVADEDRYIEIWNLVFMQDVRGDLSPKLGHKPIGELPKKNIDTGMGVE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADG 289 R+AT+LQ N Y+ DL + +I +E+ +G +Y N+ V RVI DH R+ LI DG Sbjct: 236 RVATILQGVENVYETDLVRPVIGRAEEFSGRRYGSNHADDVRFRVIADHARTGVMLIGDG 295 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P N+GRGYVLRR++RR + RLLG EP++ + MG YPEL+ I E Sbjct: 296 VTPGNDGRGYVLRRLLRRIVRSTRLLGVQEPVLQEFAKVVRDTMGPTYPELVSGFDRINE 355 Query: 350 TLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +R E+E F TL G + D + G ++L GD AF+L+DT+G P+D+ ++ Sbjct: 356 VVRIEEEAFLSTLTSGSRIFDMAAEETKRGGGDVLAGDKAFQLHDTYGFPIDLTLEMAAE 415 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGS 466 +GL +D F + EQR+RA+A + +G + + + E++G T+F+GY L+ Sbjct: 416 QGLT-VDEEGFRTLMNEQRTRAKADAAARKTGHGDLSEYRKVLEQHGETEFLGYTDLQ-- 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V A+++ G+ V +G+K E+V D+TPFYAE+GG Sbjct: 473 ---------------------AEAKVVALLEDGQPVRSVSAGKKAELVLDRTPFYAESGG 511 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+ DTG +GDG+ L++ DVQK G++VH V G + + + ++D R + + Sbjct: 512 QVADTGVLLGDGVELKVLDVQKIVPGLYVHRVEVVDGEIGLDSKVTGSVDAHRRLSIERS 571 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H A+ G +Q GS +P +RFD T +++ L +E VND + N Sbjct: 572 HSATHLVHAAVRGAYGKRAAQAGSLNSPGRMRFDFTTPGSVSADVLTEVEQEVNDYLQTN 631 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 + V + ++ A+ GA AL G KY + VRVV D G +S LCGGTHV G++ Sbjct: 632 VEVQSFTTTKDKALELGAVALFGEKYGNDVRVV-----DMGDYSRELCGGTHVDRIGQLG 686 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L+ +VS++SI +G+ R+EA+ G A ++ + + LA+ KV + GR++++ Sbjct: 687 LVKLVSDASIGSGVHRVEALVGTDALKYVRKEQLLVSQLANTFKVPSDQLPGRIDDVLTR 746 Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKI- 820 + + A+ K Q + +I V ++ ++ +VD L+++ ++ ++ Sbjct: 747 LKNAEKEIAQLKTQQVLGSAGALVDKAQEIGGVTVVAEVVPDVDGNGLRALASDIRGRLG 806 Query: 821 -QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + G++ L + EK + V+ A L A+ + GG GGG+P MAQ GG Sbjct: 807 TRPGVVALFSPAGEKLSFVVATTKAAQEKGIAAGKLVPSFAEKI-GGRGGGKPDMAQGGG 865 Query: 880 PNGNKADQAIAGVAS 894 N A +A+ + S Sbjct: 866 TNPAGAAEAVTALRS 880 >gi|255007587|ref|ZP_05279713.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12] gi|313145280|ref|ZP_07807473.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12] gi|313134047|gb|EFR51407.1| alanyl-tRNA synthetase [Bacteroides fragilis 3_1_12] Length = 872 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 347/923 (37%), Positives = 507/923 (54%), Gaps = 88/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M R +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV+ + D EA +W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASIWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI++ Q+ G +Y N N + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKSIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKATGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++ + F+ +++Q+ RAR ++ + +G W LKE G T+F+GY Sbjct: 418 LILRENGMT-VNTVEFDAEMQQQKQRAR-NAAAIETGD----WIILKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + + Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ ++ R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVNTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T EL+ +E VN Sbjct: 557 AACAANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV Sbjct: 617 AKIRANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758 ++TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F V Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNAPDLGVAI 730 Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 R +++ E++ K + K +L NV++++ K+ + F + +EV +K Sbjct: 731 RKYIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKV--IKFCLPMPAEV----VK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G K + ++++++L+ A +L + +AK++ GGGG Sbjct: 785 NIAFQLRGEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + + A+ V Sbjct: 844 GQPHFATAGGKNPDGLNAAVEKV 866 >gi|300362251|ref|ZP_07058427.1| alanine--tRNA ligase [Lactobacillus gasseri JV-V03] gi|300353242|gb|EFJ69114.1| alanine--tRNA ligase [Lactobacillus gasseri JV-V03] Length = 882 Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust. Identities = 343/918 (37%), Positives = 517/918 (56%), Gaps = 81/918 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF QF + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I+ +E+++ G KY N + V ++I DH+R+ SF IADG LP Sbjct: 238 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+P + M S YPE++ + I++ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF TL GL LLD +++ K D+ ++G AFKL+DT+G P ++ + GL Sbjct: 358 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTVSGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465 +D F++ ++ Q+ RAR L S G+ + ++K+K YG Sbjct: 418 K-VDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 465 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++E L IV ++V++A G+ ++FD+TPFYAE G Sbjct: 466 ---LEEKHAKLID----------------IVVDDKLVDKA-DGEHATLIFDKTPFYAERG 505 Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581 GQ+ D G + L ++TDVQ +H + IL E +L +D + RR Sbjct: 506 GQVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDI---ILPLEKGQEYILKVDQKRRR 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ Sbjct: 563 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIANVEKIVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + + + GA AL G KY D VRVV ++ S+ CGGTH + Sbjct: 623 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760 T +I +L IVSES++ AG RRI A+TG A ++ +DE LK + +K ++ +V ++ Sbjct: 678 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVTNKI 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814 + E+ R Q + K Q+N DL + + V ++ I ++ D + +L+ + D Sbjct: 738 SSLEEDLRASQKEAEQLKAQINKAKAGDL-FNDVKQVKDLTVIAAQADVEGMNDLRELAD 796 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + +S +++L K V+ + + + A DL + +A + GGGGGGRP+M Sbjct: 797 NWKSSAKSDVLVLAAEVNGKANMVISLNDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 855 Query: 875 AQSGGPNGNKADQAIAGV 892 AQ+GG N AIA V Sbjct: 856 AQAGGKNPAGLKDAIAEV 873 >gi|257063513|ref|YP_003143185.1| alanyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476] gi|256791166|gb|ACV21836.1| alanyl-tRNA synthetase [Slackia heliotrinireducens DSM 20476] Length = 889 Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust. Identities = 331/920 (35%), Positives = 506/920 (55%), Gaps = 63/920 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF--TGQEKPVYQA 60 + IR +L+FF+ + LPSSSLIP +DP+L+ T++GMV FK F + P Y Sbjct: 5 TTAEIREKYLKFFEGKACKRLPSSSLIP-DDPSLLLTSAGMVQFKPYFLHVKEFDPAYVG 63 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 TVQKCVR ND+D +G T RH +FFEMLGNFSFG YFK+ AW+ E +L Sbjct: 64 AATVQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGKYFKKEMCAWAWEFCLNELEL 119 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TV+++D+E ++WK + G+ I R+ +DNFW TGPCGPCSEI++DQG Sbjct: 120 PKEKLYFTVFEDDDETIEIWKSL-GVEDSHISRLGEDDNFWRAGPTGPCGPCSEIYYDQG 178 Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G P + + +R++E WN VF Q++ Q LP +IDTGMGLERMA ++Q Sbjct: 179 PEFGCGDPNCAPGCDCDRFLEFWNCVFTQYDGQEDGTLAPLPTKNIDTGMGLERMAAIMQ 238 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNH-----------RVIVDHLRSSSFLI 286 +N+D D+ + LI E+++G Y G N V H R+ DH RS +F+I Sbjct: 239 GVQSNFDTDVIRGLIAVGERLSGKSYVGKANTVGHGSEQGDIDLSLRICADHSRSVAFMI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADGILP+NEGRGYVLRR++RRA+ + R LG + + + MG YPE+++ + L Sbjct: 299 ADGILPSNEGRGYVLRRLLRRAVMHGRKLGIEGAFLNEYVAVIVDLMGHVYPEIVENRAL 358 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E + SE+ F TL +G L L +L + L+GDVAFKL+DT+G P+++ ++I Sbjct: 359 VESVIASEEGAFANTLRQGQAYLAEALKNL-EGTTLSGDVAFKLHDTYGFPVEVTEEICS 417 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHS---LGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 G++ +D F + + EQR RARA + T I+ L ++ G T+F+GY+ Sbjct: 418 ESGIS-VDHARFEECMNEQRERARAATKDDAEAAWSTYGSIYADLLKELGPTKFVGYE-- 474 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 G+ + + +KAI++ GE+V G++ E+V D TPFYAE Sbjct: 475 -GTDYE-------------------GATIKAIIRNGELVGSLHRGEEGEIVLDTTPFYAE 514 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRRQ 582 GG++GDTG G ++ D + +G+ H ++E + ++ ++D Q R Sbjct: 515 MGGEVGDTGMLHGTFGVSEVLDTKAPEKGLVCHRVRVIEGDCHAVDETVNASVDAQRRAL 574 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+ATHLLH AL +LG HV Q GS + PD LRFD TH + +T ++ +E N+ Sbjct: 575 ITRNHTATHLLHAALREVLGDHVKQKGSYVGPDRLRFDFTHFEGMTPEQIAEVERVANEK 634 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + Q +P + A +G AL G KY D VRVV + G S LCGG HVS+T Sbjct: 635 VMQAIPTTIYETSLNAAREAGVTALFGEKYGDTVRVV-----EAGEFSRELCGGCHVSNT 689 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 EI + IVSE S A +RRIEA+T A +++ + +LK A+ L+V +V R Sbjct: 690 AEIGFIKIVSEGSSAANVRRIEALTSVEALNYMNAVEAELKETAAELRVPMFDVSERTAS 749 Query: 763 ---IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSVMDALQ 817 ++Y K + N+ + + +V + + I +D+ L++ D ++ Sbjct: 750 NLATIKDYETKAKNAKKMAAEGNIAE-HVKDVVNVGYPLLVVRIDGLDTGGLRNAWDIIR 808 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++++ ++G K ++ T++ + FNA + + A + GGGGG+P MAQ Sbjct: 809 ARMETPGACIIGTVNNDKPIIMAAGTDEAVAAGFNAGAVIKNIAGNI-KGGGGGKPSMAQ 867 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG + + D A+ L Sbjct: 868 AGGKDASGLDAALQAARDML 887 >gi|226323189|ref|ZP_03798707.1| hypothetical protein COPCOM_00961 [Coprococcus comes ATCC 27758] gi|225208379|gb|EEG90733.1| hypothetical protein COPCOM_00961 [Coprococcus comes ATCC 27758] Length = 855 Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust. Identities = 346/892 (38%), Positives = 510/892 (57%), Gaps = 60/892 (6%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 + S SL+P ND +L+ NSGM P K FTGQE P + VTT QKC+R G D++NVG+ Sbjct: 1 MKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRRRVTTCQKCIRTG----DIENVGK 56 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKK 142 T RH TFFEMLGNFSFG YFK AI +W+ LT+ LD RLY +VY++D+EA+K+W + Sbjct: 57 TARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGLDPDRLYPSVYEDDDEAWKIWNE 116 Query: 143 ISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE--EGERYIEI 200 G++ ++I R DNFW +GPCGPCSEI++D+GE G PG + E +RY+EI Sbjct: 117 EIGIAPERIFRFGKEDNFWEHG-SGPCGPCSEIYYDRGEKYGCGKPGCTVGCECDRYMEI 175 Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260 WN VF QF+ L + +IDTGMGLER+A ++Q+ + +DID K L ++ Sbjct: 176 WNNVFSQFDNDGHGNYSELKQKNIDTGMGLERLACIVQDVDSMFDIDTLKALRDQVCEIA 235 Query: 261 GMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYT 318 G+ Y N V+ RVI DH+RS SF+I+DGI+P+NEGRGYVLRR++RRA + RLL Sbjct: 236 GVSYGDNESTDVSLRVITDHVRSVSFMISDGIMPSNEGRGYVLRRLLRRACRHGRLLNIA 295 Query: 319 EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK 378 + L + YPEL + K I +R E+E+F KT+D+GLV+L+ + + + Sbjct: 296 PGFLTDLAATVIEGSKDGYPELEEKKDFIMNVIRKEEEQFEKTIDQGLVILNEMKEKMAE 355 Query: 379 D--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-----A 431 + + L+G+ AFKLYDT+G P+D+ ++IL ID F A+E QR AR Sbjct: 356 EGTKTLSGEDAFKLYDTYGFPIDLTKEIL-EEEGIDIDEEGFKAAMEVQRQTARKARKAT 414 Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491 + +G + E I S+ K F+GY+ L S Sbjct: 415 NYMGADATVYESIDPSVTSK-----FVGYEHLE-----------------------YESK 446 Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKA 550 + + + EIV+ G++ + D+TPFYA +GGQ D G GDG + DV+K Sbjct: 447 ITVLTTEDEIVDALSDGERGTIFVDETPFYATSGGQEADHGVIKCGDG-EFVVEDVKKML 505 Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610 G H + +G+++ + LT+D Q R + NHSATHLL AL T+LG+HV Q+GS Sbjct: 506 GGKIGHIGYMAKGMMKVGDQVTLTVDSQRRVLCARNHSATHLLQKALRTVLGTHVEQSGS 565 Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670 + LRFD +H +T EL+ +ED VN+ I+++LPVV + M E+A +GA AL G Sbjct: 566 YVDDKRLRFDFSHFSAMTPEELQKVEDMVNESISRSLPVVIKNMPIEEARKTGAQALFGE 625 Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 KY D VRVV++ G +S CGGTHV++T EI I+SES + AG+RRIEA+T + Sbjct: 626 KYGDIVRVVNM-----GDYSIEFCGGTHVANTSEIGAFKILSESGVAAGVRRIEALTSKG 680 Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL---- 786 + ++ L A LK + V ++ + E ++L K +L + + Sbjct: 681 LMDYYGELEQLLHEAAKLLKATPDTVSEKIAHLQAENKELHSEVESLKSKLAKDAMGDVM 740 Query: 787 -SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845 ++A V ++ + ++D L+ + D L++KI G++++ S K S++ T++ Sbjct: 741 DQVEEVAGVKVIAVSVEDMDMNGLRDLGDQLKEKIGEGVVVIAS-SANGKVSLMATATDE 799 Query: 846 LLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 + + +A +L + A + GGGGGGRP+MAQ+GG N A+A V L Sbjct: 800 AMKKGAHAGNLIKAIASCV-GGGGGGRPNMAQAGGKNPAGIPDALAKVKEVL 850 >gi|184154997|ref|YP_001843337.1| alanyl-tRNA synthase [Lactobacillus fermentum IFO 3956] gi|227514535|ref|ZP_03944584.1| alanine--tRNA ligase [Lactobacillus fermentum ATCC 14931] gi|183226341|dbj|BAG26857.1| alanyl-tRNA synthase [Lactobacillus fermentum IFO 3956] gi|227087092|gb|EEI22404.1| alanine--tRNA ligase [Lactobacillus fermentum ATCC 14931] Length = 882 Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust. Identities = 330/922 (35%), Positives = 505/922 (54%), Gaps = 77/922 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR +L+FF ++GH +PS SL+P NDPTL++ NSG+ KN F G+ P +T Sbjct: 8 NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RHHT FEM+GNFS G YFK+ AI AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A + W +G+ D ++ DNFW + + GP GP +E+F+D+G Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHLL--ADQDNFWDIGQ-GPSGPDTEVFYDRG 179 Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + + P PG E ERY+EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 180 QEMNNLPEDDPESYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERV 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290 ++ + N++ DLF LI+ E + K G N V ++I DH+RS +F I DG Sbjct: 238 VSIFENAKTNFETDLFMPLIKQVEGFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGA 297 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYV+RR++RR++ + LG EP + ++P + M YP++++ I Sbjct: 298 LPSNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASV 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + SE++RF TL+ GL LL+ V+ + + ++G AFKLYDT+G P+++ ++ Sbjct: 358 ISSEEDRFSATLNGGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADE 417 Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F A+ EQ++RAR A + G G +W + ++ ++++GY + Sbjct: 418 GLT-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTDE---SKYVGY-----TD 468 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + ++ KV+ + G+ ++A GQ V+V+FDQTPFYAE GGQ Sbjct: 469 LVVDNAKVI-----------------GLAADGKQADQAEPGQHVDVIFDQTPFYAEMGGQ 511 Query: 528 LGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 + DTG I + + + DVQ + H + ++ L +D ++ Sbjct: 512 VADTGQVIDNYGKVVATVKDVQHAPHQQNL-HTLELTAPIKKGARYKLVVDRARHLKIEK 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL +LG H Q GS + LRFD H +T +LK +ED VN+ I + Sbjct: 571 NHTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWK 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL KY D+VRVV + G ++ CGG HV +T EI Sbjct: 631 EIPVTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEI 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L IVSE + AG+RRIEA+T A + + + + L +A+ LKV+Q V RV E+ Sbjct: 686 GLFKIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQ 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-------IISEVD---SKELKSVMD 814 + QL A ++ + L+ + DV + I +EV +L+ + D Sbjct: 746 D-----QLKEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMAD 800 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 ++K S +++L + + KA++L+ V + L A DL + A + GGGGGRP + Sbjct: 801 DWRQKDYSDVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAI-NGGGGGRPTL 858 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 AQ+GG N +A+ + F+ Sbjct: 859 AQAGGKNPAGISEALKLASQFM 880 >gi|294778219|ref|ZP_06743645.1| alanine--tRNA ligase [Bacteroides vulgatus PC510] gi|294447847|gb|EFG16421.1| alanine--tRNA ligase [Bacteroides vulgatus PC510] Length = 872 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 344/921 (37%), Positives = 514/921 (55%), Gaps = 84/921 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PG+ +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++ G Y +N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEI-SGVDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++ FN +++Q+ RAR ++ + +G W ++KE G T F+GYD Sbjct: 418 LILRENGMT-VNEEEFNAEMQKQKERAR-NAAAVETGD----WITIKE--GDTHFVGYD- 468 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 F + + +L + I Q+ + + ++V TPFYA Sbjct: 469 -----FTEYETSILR--------------YRQIKQKNQTL--------YQIVLSDTPFYA 501 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+GDTG + + ++I D KK + +H I ++ ++ ++ +D + R Sbjct: 502 ESGGQVGDTGVIVSEFETIEIIDT-KKENNLPIH--ITKKLPEHLDVPMMACVDTEKRAA 558 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN Sbjct: 559 CAANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAK 618 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +N+P+ R + E A GA AL G KY D VRVV +S CGGTHV + Sbjct: 619 IRENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------NSIEFCGGTHVPA 672 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGN 755 TG+I ++ I+SESS+ AG+RRIEAITG + + + L L + LKV+ Sbjct: 673 TGKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAPDLKVAIRK 732 Query: 756 VVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812 + +++ EE+ K + K +L N ++++ K+ I + + +K + Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKA------IIPMSADVVKDI 786 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 L+ +I + + +++G K + ++++EDL+ NA L R +AK++ GGGGG+ Sbjct: 787 AFQLKGEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLI-QGGGGGQ 845 Query: 872 PHMAQSGGPNGNKADQAIAGV 892 PH A +GG N + + A+ V Sbjct: 846 PHFATAGGKNPDGLNAAVDKV 866 >gi|320528969|ref|ZP_08030061.1| alanyl-tRNA synthetase [Selenomonas artemidis F0399] gi|320138599|gb|EFW30489.1| alanyl-tRNA synthetase [Selenomonas artemidis F0399] Length = 872 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 338/915 (36%), Positives = 517/915 (56%), Gaps = 71/915 (7%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L FF +K H L S SLIP +DPTL+ +GM P K FTG+ KP +TT Sbjct: 4 NELREAYLRFFAEKKDHLRLASYSLIPEDDPTLLLIGAGMAPLKPFFTGKMKPPCPRITT 63 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVR G D++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ LT+ +L + Sbjct: 64 SQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIELPKE 119 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++++Y +D EA +W + GL D I+ + NDNFW + GPCGP SEI+ D GE Sbjct: 120 KLWVSIYPDDNEARAIWLEQPGLLPDHIVPL--NDNFWEIG-PGPCGPDSEIYIDLGEGR 176 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R++EIWNLVF Q+++ + E +L +IDTG GLER+A+V+Q K Sbjct: 177 GCGEPTCGVGCDCDRFLEIWNLVFTQYDRTEEGEYNLLAHKNIDTGCGLERLASVVQNKE 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N++ DL +I + +++G+ Y + + ++ +VI DH RS S +I DGILP+NEGRGY Sbjct: 237 TNFETDLLYPIIAYASKISGVAYGSDKSKDISLKVIADHARSISVMIMDGILPSNEGRGY 296 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDER 357 VLRR +RRA+ + R+LG T+P + + A+ A + EL + I+ +R E+ER Sbjct: 297 VLRRTLRRAIRHGRMLGITDPFLDGAVDAVVEIFRGAPDFSELTAKQEYIKRVIRVEEER 356 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL +G+ LL+G + L ++ +L GD+ FKLYDT+G P ++ ++IL G+ +D Sbjct: 357 FASTLAQGMELLNGEIDRLKEENKVVLPGDIGFKLYDTYGFPRELTEEILHEHGIT-LDG 415 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + F++ +E QRSRAR S E ++ + I LR KE Sbjct: 416 VEFDKEMEAQRSRAR-------SARAENQVVAVPD----LSNIDTSALRSDSTAKE---- 460 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 ++V AI + GEIV+ G+ ++ D+TPFYAE GGQ+GD G Sbjct: 461 --------------AVVAAIWRDGEIVDSLRDGESAGIILDRTPFYAEGGGQVGDEGVLR 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 D + I++ +K +G H A VE G + + +T++ + + + NH+ATHLL Sbjct: 507 SDLGYISISNAKKLPDGTIYHIAYVEEGEIHRGDRVDITVNRERKLSSARNHTATHLLQA 566 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G+HV Q GS +TPD LRFD T+ +P+T +++ IE+ VN I +++ + +M Sbjct: 567 ALQRVVGAHVKQAGSLVTPDRLRFDFTNFEPVTEQQIRDIEELVNAEILRSVDLDISMMP 626 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 DA GA AL G KY D VRVVSV S LCGG+HV +TG+I L I+ E Sbjct: 627 IADAKNMGAMALFGEKYGDIVRVVSVPG-----FSIELCGGSHVGNTGQIGLFKIIGEFG 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL----- 770 + AG+RRIEAITG+ A S+ ++ +++ LK ++ ++++ +E + + Sbjct: 682 VAAGVRRIEAITGKAAFSYAATLYHTVQEISAKLKTRPEDLSYQIDKFLDERKAMQEQLR 741 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQSGIIMLVG 829 Q + K ++ +I + ++ + VDS EL+++ D +K+ GI++L Sbjct: 742 QFAEFRDKADAQKLLMAVREIGAFHVVAG-KANVDSMDELRTIADLACEKLDHGIVILAA 800 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG------GGGRPHMAQSGGPNGN 883 + +K V +VV D NAV + +++ GGGRP MAQ+GG Sbjct: 801 VIDDK---VSLVVKADK----NAVSAGAHAGQIIKEAAKEVGGGGGGRPDMAQAGGKTPE 853 Query: 884 KADQAIAGVASFLKK 898 QA S +++ Sbjct: 854 NIPQAFDAAISVIQR 868 >gi|301161775|emb|CBW21315.1| putative alanyl-tRNA synthetase [Bacteroides fragilis 638R] Length = 872 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 349/923 (37%), Positives = 506/923 (54%), Gaps = 88/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M R +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKETRDSFKNFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV+ + D EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLERDNEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSTLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI+A Q+ G +Y N N + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIKAIAQMAGTEYGKNEQNDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDSMGDAYPELIAQKE 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMADTKANGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ +++ F+ +++Q+ RAR ++ + +G W LKE G T+F+GY Sbjct: 418 LILRENGMT-VNVEEFDVEMQQQKQRAR-NAAAIETGD----WIILKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + + Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYETSILRYRQVKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVNEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T EL+ +E VN Sbjct: 557 AACAANHSATHLLDEALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEELRKVEHLVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY D VRV+ S CGGTHV Sbjct: 617 AKIRANVPLQEHRNIPIEEAKELGAIALFGEKYGDHVRVIQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758 ++TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F V Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLSDLKALFNNAPDLGVAI 730 Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 R +++ E++ K + K +L NV++++ K+ + F + +EV +K Sbjct: 731 RKYIDENAGLKKQVEDFMKEKEAAVKERLLKNVQEINGIKV--IKFCLPMPAEV----VK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G K + ++++++L+ A +L + +AK++ GGGG Sbjct: 785 NIAFQLRGEITENLFFVAGTVDANKPMLTVMISDNLVAGGLKAGNLVKEAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + + A+ V Sbjct: 844 GQPHFATAGGKNPDGLNAAVEKV 866 >gi|86134548|ref|ZP_01053130.1| Alanyl-tRNA synthetase [Polaribacter sp. MED152] gi|85821411|gb|EAQ42558.1| Alanyl-tRNA synthetase [Polaribacter sp. MED152] Length = 873 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 344/918 (37%), Positives = 502/918 (54%), Gaps = 80/918 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR TFL+FFQK H ++PS+ ++ +DPTLMF NSGM PFK F G P +T QK Sbjct: 6 IRATFLDFFQKKSHLVVPSAPMVTKDDPTLMFVNSGMAPFKEYFLGNATPKKNRITDSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D+ LY Sbjct: 66 CLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKIDKDILY 125 Query: 127 ITVYD---------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 +TV++ D EA+ +WK+ ++ D+I++ DNFW M E GPCGPCSEI Sbjct: 126 VTVFEGSEDADQLNMDTEAYDIWKEY--IAEDRILKGNKKDNFWEMGEQGPCGPCSEIHV 183 Query: 178 D----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 D + + G +E+ + +EIWNLVFMQ+ ++ LP IDTGMG ER+ Sbjct: 184 DIRSAEEKAKLDGRTLINEDHPQVVEIWNLVFMQYNRKANGTLEELPNKHIDTGMGFERL 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 VLQ +NYD D+F +I+ +T Y N + RVI DH+R+ +F IADG L Sbjct: 244 CMVLQNVQSNYDTDVFTPIIREIGTITNTSYGKNEKQDIATRVISDHVRAVAFSIADGQL 303 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K LIE Sbjct: 304 PSNTGAGYVIRRILRRAVRYGFTFLNKKEPFIYRLVSILSDKMGKAFPELKSQKQLIENV 363 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ F +TLD+GLVLLDG++ + EI +GD F+LYDT G P+D+ IL +G Sbjct: 364 IKEEETSFLRTLDQGLVLLDGIIENSKSKEI-SGDKVFELYDTFGFPIDLTALILSEKGY 422 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F + L++Q++R+RA S + W L + +FIGYD L + + Sbjct: 423 T-LDEKGFEEELQKQKNRSRA-----ASEMSTDDWTILIDD-AVEEFIGYDFLEANVKLT 475 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 RKV +K G+ ++VF+ TPFY E GGQ+GD Sbjct: 476 RYRKVTSKK---------------------------DGEMYQLVFNLTPFYPEGGGQVGD 508 Query: 531 TGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G GD + + T KK + +H A L V +D + R + NH Sbjct: 509 KGYLEDTHGDVVYILDT---KKENNVIIHFAKNLPQNLDANFKAV--VDEKQRYRTECNH 563 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+HV Q GS + LRFD +H +T+ EL+ +E+ VN I+ L Sbjct: 564 TATHLLHQALREVLGTHVEQKGSAVHSKYLRFDFSHFSKLTTEELQDVENFVNARISGKL 623 Query: 648 PV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 P+ +R + E AIA GA AL G KY D VR + S LCGGTHV +TG+I Sbjct: 624 PLEESRNITMEKAIADGAMALFGEKYGDTVRAIKFG------KSIELCGGTHVKNTGDIW 677 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 I SE ++ AGIRRIEAIT + + L + L ++ N V V+++ +E Sbjct: 678 HFKIKSEGAVAAGIRRIEAITNDAVKDFYFDNNRTLFEIKDLLNNTK-NPVKAVQKLQDE 736 Query: 767 YRKLQLIHAKRKLQLNVEDLS------CHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 +LQ ++ L+ ++LS +I V F++ + ++D+ +K++ +L K+ Sbjct: 737 NTELQK-QVEQLLKEKAQNLSGEIKNQLQEINGVQFLATKV-DLDANGIKNLAFSLGKEH 794 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 Q+ ++ +KA + ++++L + +NA + R K++ GGGGG+P A +G Sbjct: 795 QNLFLLFASAPSNEKALLTCYISKELANERGYNAGTVVRELGKLI-HGGGGGQPFFATAG 853 Query: 879 GPNGNKADQAIAGVASFL 896 G N +A+ +L Sbjct: 854 GRNPGGIPKALEKAKDYL 871 >gi|123967582|ref|YP_001008440.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. AS9601] gi|205830182|sp|A2BNH2|SYA_PROMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123197692|gb|ABM69333.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. AS9601] Length = 886 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 333/917 (36%), Positives = 523/917 (57%), Gaps = 78/917 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+F+ + H+++PS+SLIP +DPT+M T +GM+PFK +F G +E+P +A T+ Q Sbjct: 15 IRNAFLKFYSEKLHKIIPSASLIP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVG T RHHTFFEMLGNFSFG YFK AIQ AW+L+T + L + Sbjct: 73 KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTNIYQLSVENI 128 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++V+ EDEE+ K+W G+ D+I+++ DNFWS +TGPCGPCSE+++D Sbjct: 129 IVSVFHEDEESAKIWSDEIGIHPDRIVKLGEEDNFWSSGKTGPCGPCSELYYDFHP--EK 186 Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 GL E+G+R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+K NNY Sbjct: 187 GLQNIDLEDGDRFIEFYNLVFMQYNRDPNGKLTDLKFKNIDTGMGLERMAQILQKKQNNY 246 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +IQ ++ + Y + N ++ ++I DH R+ LI+DG+ +N GRGY+L Sbjct: 247 ETDLIFPIIQKICEIANIDYFSSDDKNKISLKIIGDHTRAVIHLISDGVSASNLGRGYIL 306 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG T + H+ M + YP+L LI ++ E+ RF +T Sbjct: 307 RRLIRRMVRHGRLLGITNEFLPHIASVGINLMQNNYPDLKNNNDLILNEIKIEEIRFRET 366 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LLD ++S K +++G AF+LYDT+G PL++ +I ++ +D+ F + Sbjct: 367 LERGEKLLDELISSGQK--LISGFKAFELYDTYGFPLELTVEIAEEHSIS-VDVKGFEEE 423 Query: 422 LEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + Q+ RA+A S + G+ E+ + + T F GY K L Sbjct: 424 MNVQKERAKAASSNIDLTLEGSLEREI----DVFNKTVFNGY-------------KSLLS 466 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + I K I +V+EA GQKV +V DQT FY E+GGQ+GD G + Sbjct: 467 EAEI----------KGIFLDSTLVKEASEGQKVLIVLDQTTFYGESGGQVGDIGTIFSND 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + + +V +K + +F+H+ +++G L + + NR + + NH+ATHLL AL Sbjct: 517 VEVLVDNVMRK-KNVFLHYGTIKKGKLTIGQKVKTNVSSSNRAKAAANHTATHLLQSALK 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +++ V Q GS + + LRFD S PI+ ++ IE VN I +N + + M++ + Sbjct: 576 SVINESVGQKGSLVAFNKLRFDFNSSNPISKDQISKIETLVNSWIMENHSLEIKNMSKSE 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA A+ G KY+D VRVV+V GV S LCGGTHV +T E+ I+SE I A Sbjct: 636 ALEKGAVAMFGEKYDDEVRVVNVP----GV-SMELCGGTHVKTTSELGSFKIISEEGISA 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA++GQ A + ++ + L+ LK + + RV + E LI+ ++ Sbjct: 691 GVRRIEALSGQSALDYFSDRNALVNQLSDLLKANPNQLFERVNNLQAE-----LINKNKE 745 Query: 779 LQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDA---LQKKI-QSGIIML 827 +Q ++++ K + VN S +++++D + S+ A L + I++L Sbjct: 746 IQKMKDEIAYFKYSSIKSSAEIVNSFSILVNQIDGLDGNSLQSAALNLTSHLGNKAIVIL 805 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGPN 881 GI + +L VV+ L D +AV + + K++ GGGGG+P+ AQ+G + Sbjct: 806 GGIPNPENRKLLFVVS--LGD--DAVKIGLHAGKLINEIARICSGGGGGKPNFAQAGAKD 861 Query: 882 GNKADQAIAGVASFLKK 898 +K A+ ++L+K Sbjct: 862 IDKLSDALDYAKNYLQK 878 >gi|291542143|emb|CBL15253.1| alanyl-tRNA synthetase [Ruminococcus bromii L2-63] Length = 877 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 328/906 (36%), Positives = 503/906 (55%), Gaps = 56/906 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R FLEFF+ G LPS SL+P +D +L+ NSGM P K FTG+ P + V Sbjct: 4 TGLNELREKFLEFFESKGCLRLPSFSLVPKDDNSLLLINSGMAPMKKYFTGEVTPPRKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D++ VG T RH TFFEMLGNFSFG YFK A AW+ TK ++ Sbjct: 64 TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFGDYFKHEATAWAWEFFTKVLEMP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +LY+++Y++D+EAF +W K G+ ++R+ DNFW +GPCGPCSEI+FD+G+ Sbjct: 120 PEKLYVSIYEDDDEAFDIWTKEVGVDPSHMVRLGKEDNFWEHG-SGPCGPCSEIYFDRGD 178 Query: 182 CIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P E +R++E+WNLVF QFE K L +IDTGMGLER+A V+Q Sbjct: 179 EKGCGRPDCHVGCECDRFVEVWNLVFTQFESDGKGNYTPLEHPNIDTGMGLERLACVMQG 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N + +D +++++ Q+TGM+Y N + V+ RVI DH+RS++F+I DG+LP+NEG+ Sbjct: 239 VDNLFLVDTIQNIMKHISQITGMEYGKNEKSDVSLRVITDHIRSTTFMIGDGVLPSNEGK 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + RLLGY EP + + + E +AYPEL + + I + ++ E+E Sbjct: 299 GYVLRRLLRRAARHGRLLGYNEPFLYKVCDTVIKENLTAYPELKEKQEFITKVIKVEEES 358 Query: 358 FGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 F KT+D+G +L+G++ +D ++L+G+ AFKL DT+G P+D+ ++IL +G+ +D+ Sbjct: 359 FAKTIDQGFKMLNGIMDS--EDVKVLSGEDAFKLNDTYGFPIDLTREILSEKGIK-VDVE 415 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK---EKYGATQFIGYDLLRGSKFMKEDR 473 F + ++EQ+ R+R G+ W S T+F+GY L+ Sbjct: 416 RFRELMKEQKKRSRDARKNAGADA----WISDATDLSDVANTEFVGYTDLKS-------- 463 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +S V AIV+ G V+ G+ +V D+TPFY E GGQ+GDTG Sbjct: 464 ---------------TSKVLAIVKDGVRVDSIGEGENAIIVLDKTPFYGEGGGQVGDTGV 508 Query: 534 AIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + K G I++H V+ G + + +D + R ++ NH+A HL Sbjct: 509 MESGSFSADVDNTTKNPSGTIYLHACTVKSGSINVGAEVSTAVDEERRADITRNHTAAHL 568 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG+HV Q G ++ D RFD TH + +T+ EL +++ VN I + +PV T+ Sbjct: 569 LQSALREVLGNHVQQAGQLVSDDYFRFDFTHFEALTAKELIEVQNLVNKKILEAIPVTTQ 628 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E+A GA AL G KY D VRVVS G S CGGTHV +T + L I Sbjct: 629 EMPIEEAKKLGAMALFGEKYGDVVRVVS-----AGDFSVEFCGGTHVKNTANLGLFRIRQ 683 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV----VGRVEE-IWEEY 767 E S+ AG+RRIEA+TG ++ G + + S LK++ V + E+ I E+ Sbjct: 684 EGSVAAGVRRIEALTGMGVLKYINGMSAVIMDVCSLLKIANPKAVVEGVQKAEQLIKEQQ 743 Query: 768 RKLQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 R++ +++K + Q+ + V ++ I + ++ L+++ + + + + Sbjct: 744 REINELNSKLAVAQIGQLFAGTTEENGVRVVTGRIDKANADILRTMCEKARDFAPKCVCV 803 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 L + K E L NA + + A+ GG GGG+P MA +G K Sbjct: 804 LATENDGKVTFAAACGKEALALGANAGKIIKAVAQ-KAGGNGGGKPDMAMAGAKQPEKIS 862 Query: 887 QAIAGV 892 +A+ V Sbjct: 863 EALDSV 868 >gi|172036637|ref|YP_001803138.1| alanyl-tRNA synthetase [Cyanothece sp. ATCC 51142] gi|205830042|sp|B1WYQ5|SYA_CYAA5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|171698091|gb|ACB51072.1| alanyl-tRNA synthetase [Cyanothece sp. ATCC 51142] Length = 879 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 338/903 (37%), Positives = 519/903 (57%), Gaps = 64/903 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+F+ ++ H++LPS+SL+P DPT++ T +GM+PFK IF GQ++P + TT Sbjct: 11 NQIRDRFLQFYAQHNHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKQPDFPRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK + L Sbjct: 70 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVYRLPPEN 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 + ++V+++D+EAFKLW+++ G+ +I R+ DNFW TGPCGPCSE+++D + Sbjct: 126 IVVSVFEKDDEAFKLWEEMIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPEL- 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFM++ + + L +IDTGMGLERMA +LQ+ NNY Sbjct: 185 GEDNIDLEDDSRFIEFYNLVFMEYNRDAEGNLAPLQNKNIDTGMGLERMAQILQKVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + + + Y+ V+ +VI DH+RS +IADGI +N RGYVL Sbjct: 245 ETDLIFPIIETAANIANIDYQKATEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + +AYP++ + + I+ L E+ F KT Sbjct: 305 RRLIRRVVRHGRLIGIEGQFIKQVAETAIELSENAYPQVRERESFIKGELEREETAFLKT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL ++ ++G AF LYDT+G PL++ Q+I L ++I F Sbjct: 365 LERGEKLLAEIIEKTETQGQISGVDAFTLYDTYGFPLELTQEIAEESNLT-VNIEEFEAE 423 Query: 422 LEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + +Q+ R++A ++ L G+ +K L E T F+GY L+ Sbjct: 424 MRQQQERSKAAHETIDLTVQGSLDK----LAEHIHPTAFLGYTDLQ-------------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 +++ V+A++ QG+ V+ A +G +V++V DQTPFY E+GGQ+GD G G+ Sbjct: 466 ---------LTAKVEAVLIQGKTVDTAEAGSEVQIVLDQTPFYGESGGQIGDRGFLTGEN 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +++ DVQK++ GIFVH VERG + + TID RRQ+ NH+ATHLL AL Sbjct: 517 LVIRVEDVQKES-GIFVHFGRVERGSVSVNDQVTATIDRACRRQVQANHTATHLLQAALK 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ++ +SQ GS + D LRFD + +TS EL+ IED +N IA+ +M E Sbjct: 576 KVVDKSISQAGSLVAFDRLRFDFNCPRAVTSEELQEIEDLINTWIAEAHETEIAVMPIET 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A GA A+ G KY VRV+ V GV S LCGGTHV +T EI L I+SES I + Sbjct: 636 AKEKGAIAMFGEKYGSEVRVIDVP----GV-SMELCGGTHVKNTAEIGLFKIMSESGISS 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA+ G +L ++ +K L K+ + R+ + E + Q ++ Sbjct: 691 GVRRIEAVAGPAVLEYLKVRETVVKDLCDRFKIKPEEISDRITTLQSELKTTQ-----KE 745 Query: 779 LQLNVEDLSCHK----------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L+ +DL+ K I + + + E+D+K L++ + LQ+K+ G ++L Sbjct: 746 LEAVKQDLAVAKSDQLLTEAESIGEFKLLVSDMGEMDAKALQTAAERLQQKLGEGAVILG 805 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKAD 886 I E K S L+ +++ + + ++ + GGGGGGRP++AQ+GG +K Sbjct: 806 SIPSEGKVS-LVAAFSKKVNQEKQLQAGKFIGQIAKICGGGGGGRPNLAQAGGREPSKLS 864 Query: 887 QAI 889 +A+ Sbjct: 865 EAL 867 >gi|168182642|ref|ZP_02617306.1| alanine--tRNA ligase [Clostridium botulinum Bf] gi|237796002|ref|YP_002863554.1| alanyl-tRNA synthetase [Clostridium botulinum Ba4 str. 657] gi|182674085|gb|EDT86046.1| alanine--tRNA ligase [Clostridium botulinum Bf] gi|229262453|gb|ACQ53486.1| alanine--tRNA ligase [Clostridium botulinum Ba4 str. 657] Length = 879 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 336/915 (36%), Positives = 525/915 (57%), Gaps = 66/915 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FT + P + VTT Sbjct: 6 LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTRLQVPPNKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFKE I AW+ T+ L + Sbjct: 66 CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKEEVIPWAWEFTTEVLKLPKN 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+G Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177 Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G + S E + ++ +E WNLVF QF++ + L +IDTGMGLERMAT++Q Sbjct: 178 AGEIKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIMQ 237 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEG 296 +++D K ++ +++G Y+ + + ++ R+I DH+RS +F+I+DGILP+NEG Sbjct: 238 NVDTIFEVDTIKAILDQVCKLSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNEG 297 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+E Sbjct: 298 RGYVLRRLLRRAARHGKTLGINNTFLHNLTDIVIENCYKNYPELEEKRGYIKKVIKLEEE 357 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +T+D G+ +L+ + + + ++L+GD AFKLYDT+G P+++ ++IL G++ ID Sbjct: 358 RFDETIDAGMQILNDYIEEVKNNNYKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-ID 416 Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 FN+ ++EQR RAR+ + +G KI ++ T F GYD L Sbjct: 417 KEGFNKEMKEQRERARSAREETNYMGAEDTILNKIDLNIN-----TDFEGYDKLE----- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 V S V I++ E G + +V TPFYAE GGQ+G Sbjct: 467 ------------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQIG 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + ++ D +K G +H + G + E ++L ++ + R + NH+A Sbjct: 509 DTGIIYNDNFKAEVIDCKKNISGKILHFVKILDGKVALEDQVILKVNEERRNNIRKNHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 TH+LH AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + V Sbjct: 569 THILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANAV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T++MN E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + Sbjct: 629 NTKVMNIEEAKEQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMFK 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEY 767 IVSE+ + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + Sbjct: 684 IVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMKE 743 Query: 768 RKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 ++ ++ K KL ED S +I V S + ++D L+ + D ++ +QSG+ Sbjct: 744 KEKEIEALKLKLASGAEDEILNSIKEIKGVKVASAAVKDIDGNALRDLGDKVRDNMQSGV 803 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNG 882 ++L G + + K + + T+D + + V ++ +V + GGGGGGRP MAQ+GG + Sbjct: 804 VVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKDP 860 Query: 883 NKADQAIAGVASFLK 897 NK + AI V + ++ Sbjct: 861 NKLEDAIKTVETVVE 875 >gi|126660159|ref|ZP_01731277.1| alanyl-tRNA synthetase [Cyanothece sp. CCY0110] gi|126618524|gb|EAZ89275.1| alanyl-tRNA synthetase [Cyanothece sp. CCY0110] Length = 879 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 340/904 (37%), Positives = 521/904 (57%), Gaps = 64/904 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+F+ + H++LPS+SLIP DPT++ T +GM+PFK IF GQ++P + TT Sbjct: 11 NQIRDRFLQFYAQQNHQILPSASLIP-EDPTVLLTIAGMLPFKPIFLGQKQPDFPRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L T+ + L Sbjct: 70 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTQVYQLPPEN 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 + ++V++ D+EAFKLW+++ G+ +I R+ DNFW TGPCGPCSE+++D Sbjct: 126 IVVSVFENDDEAFKLWEEMIGIPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYD-FHPER 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFM++ + + L K +IDTGMGLERMA +LQ+ NNY Sbjct: 185 GEESIDLEDDSRFIEFYNLVFMEYNRDVEGNLTPLQKKNIDTGMGLERMAQILQKVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + + + Y V+ +VI DH+RS +I+DGI +N RGYVL Sbjct: 245 ETDLIFPIIETAANIANINYHKATEKTKVSLKVIGDHVRSVVHMISDGITASNTDRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + AYP++ + + I+ L E+ F KT Sbjct: 305 RRLIRRVVRHGRLIGIEGQFINQVAETAIQLSQKAYPQVRERESFIKGELEREETAFLKT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL ++ K ++G AF LYDT G P ++ Q+I L ++I F Sbjct: 365 LERGEKLLAEIIEKTEKQGQISGVDAFTLYDTFGFPFELTQEIAEESNLT-VNIKEFEAE 423 Query: 422 LEEQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +++Q+ R++A ++ L G+ +K L E T+F+GY L+ Sbjct: 424 MKQQQERSKAAHETIDLTVQGSLDK----LAEHIHPTEFLGYTDLQ-------------- 465 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 +++ V+A++ QG+ V+ A +G +V++V DQTPFY E+GGQ+GD G G+ Sbjct: 466 ---------LTAKVEAVLIQGKSVDIAEAGSEVQIVLDQTPFYGESGGQIGDRGFLTGEN 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +++ DVQK++ GIFVH VERG + ++ TID RRQ+ NH+ATHLL AL Sbjct: 517 LVIRVDDVQKES-GIFVHFGRVERGQIAINDNVKATIDRACRRQVQANHTATHLLQAALK 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ++ + +SQ GS + D LRFD + +TS EL+ IED +N IA+ T +M E Sbjct: 576 KVVDNSISQAGSLVAFDRLRFDFNCPRAVTSEELQEIEDLINTWIAEAHDTETAVMPLET 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A GA A+ G KY+ VRV+ V GV S LCGGTHV +T EI L I+SES I + Sbjct: 636 AKEKGAIAMFGEKYSAEVRVIDVP----GV-SMELCGGTHVKNTAEIGLFKIMSESGISS 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 GIRRIEA+ G +L ++ +K L K+ + R+ + E + Q ++ Sbjct: 691 GIRRIEAVAGPAILEYLKVRETVVKDLCDRFKIKPEEISDRITTLQSELKTTQ-----KQ 745 Query: 779 LQLNVEDLSCHK----------IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 L+ +DL+ K I + + + E+D+K L++ + LQ+K+ G ++L Sbjct: 746 LEAVKQDLAVAKSDQLLNEAETIGEFKLLVSDMGELDAKALQTAAERLQQKLGEGAVILG 805 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKAD 886 I E K S L+ +++ + + ++ + GGGGGGRP++AQ+GG +K Sbjct: 806 SIPSEGKVS-LVAAFSKKVNKEKQLQAGKFIGQIAKICGGGGGGRPNLAQAGGREPSKLS 864 Query: 887 QAIA 890 +A++ Sbjct: 865 EALS 868 >gi|326800500|ref|YP_004318319.1| alanyl-tRNA synthetase [Sphingobacterium sp. 21] gi|326551264|gb|ADZ79649.1| alanyl-tRNA synthetase [Sphingobacterium sp. 21] Length = 871 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 339/916 (37%), Positives = 508/916 (55%), Gaps = 77/916 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+ GHE++PS+ ++ NDPTLMFTN+GM FK +F G+ Y V Q+ Sbjct: 6 IRQAFLNFFKSKGHEIVPSAPIVVKNDPTLMFTNAGMNQFKELFLGEAPIKYSRVVDTQR 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI +W+LLT + +D+ RLY Sbjct: 66 CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTNVYKIDKDRLY 125 Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +TV++ ED EA+ WK+ + + +I++ DNFW M ETGPCGPCSEI D Sbjct: 126 VTVFEGDSEEGLPEDAEAYGYWKE--HIDSTRILKGNKKDNFWEMGETGPCGPCSEIHVD 183 Query: 179 -----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + I G +++ + IEIWN VFMQF + LP +DTGMG ER+ Sbjct: 184 CRSDEERRMIDGSTLVNADH-PQVIEIWNNVFMQFNRLKDGSLQPLPAKHVDTGMGFERL 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291 VLQ KT+NYD D+F+ LIQ + ++Y N + RV+ DH+R+ SF IADG L Sbjct: 243 VRVLQSKTSNYDTDIFQPLIQLIAKAAKVQYGENEQQDIAMRVMADHIRAISFAIADGQL 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N GYV+RRI+RRA+ YA L + EP + L+ L + + EL + + +++ Sbjct: 303 PSNNKAGYVIRRILRRAVRYAYTFLNFKEPFLNTLVIPLAQQFEGVFDELYKQQDFVQKV 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + E+ F +TL G+ + + G +++GD AF+LYDT+G P+D + D++ Sbjct: 363 VLEEELSFLRTLVTGIQRFESYHTDQG---LVSGDFAFELYDTYGFPID-LTDLMAREKG 418 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D+ F AL +Q+ R+RA + + +G W ++ E G T F+GYD L + Sbjct: 419 WKVDMPGFENALNKQKERSRA-ATAIDTGD----WVTVNED-GETHFVGYDNLATETKIL 472 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + RKV +G+I + ++V QTPFYAE GGQ+GD Sbjct: 473 KYRKVSA--------------------KGKI--------QYQLVLSQTPFYAEGGGQVGD 504 Query: 531 TGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 TG I + + +QI D KK G+ +H + + E + RR + NHS Sbjct: 505 TGILIHETSKETIQIVDT-KKENGLIIHFS--DELPSHLEGVFFAKVAEDRRRDIQSNHS 561 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG HV+Q GS ++ + LRFD +H ++ EL+ +E VN I +NL Sbjct: 562 ATHLLHAALKQVLGEHVNQKGSLVSEEVLRFDFSHFAKVSDEELRRVEQVVNAKIRENLA 621 Query: 649 V-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + R + DAI G AL G KY D VRV+ + S LCGGTHV TG I Sbjct: 622 LDERRNVPYNDAIDMGVTALFGEKYGDFVRVIIFDEN----FSKELCGGTHVQYTGNIGF 677 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ---GNVVGRVEE-- 762 I+SE ++ AG+RRIEAITG+RA + QDE + L + LK + + G ++E Sbjct: 678 FKILSEGAVAAGVRRIEAITGRRAEEIIDRQDELINELKNLLKHPKDLSAAITGLLQENS 737 Query: 763 -IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + +E K + A++ Q+ VE I V F+ + ++ +K++ A++K I Sbjct: 738 KLKKEVEKSLVEKAQQLRQVLVE--KAIDINGVRFIGEQVELPNADAVKNLAFAIKKAID 795 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 +G+ +++ + K ++ +V+++DL++R +A + R AK + GGGGG+P A +GG Sbjct: 796 NGLFLVLAADFDGKPNLTVVLSDDLVNRGLDAGKIVRELAKEI-KGGGGGQPFYATAGGK 854 Query: 881 NGNKADQAIAGVASFL 896 + + A+ SF+ Sbjct: 855 DSSGLTVALEKAKSFV 870 >gi|254882808|ref|ZP_05255518.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA] gi|254835601|gb|EET15910.1| alanyl-tRNA synthetase [Bacteroides sp. 4_3_47FAA] Length = 872 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 344/921 (37%), Positives = 514/921 (55%), Gaps = 84/921 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MMTAKEIRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKI 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY TV+ + D EA W++ L D I+ +DNFW M +TGPCGPC Sbjct: 121 DPKDLYATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PG+ +++ + IEIWNLVFMQF ++ LP IDTGM Sbjct: 179 SEIHIDSRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++ G Y +N + RVI DH+R+ +F I Sbjct: 239 GFERLVRTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMNDAKAAGKKEI-SGVDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++ FN +++Q+ RAR ++ + +G W ++KE G T F+GYD Sbjct: 418 LILRENGMT-VNEEEFNAEMQKQKERAR-NAAAVETGD----WITIKE--GDTHFVGYD- 468 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 F + + +L + I Q+ + + ++V TPFYA Sbjct: 469 -----FTEYETSILR--------------YRQIKQKNQTL--------YQIVLSDTPFYA 501 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+GDTG + + ++I D KK + +H I ++ ++ ++ +D + R Sbjct: 502 ESGGQVGDTGVIVSEFETIEIIDT-KKENNLPIH--ITKKLPEHLDVPMMACVDTEKRAA 558 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN Sbjct: 559 CAANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDKQLREVEHLVNAK 618 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +N+P+ R + E A GA AL G KY D VRVV +S CGGTHV + Sbjct: 619 IRENIPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------NSIEFCGGTHVPA 672 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGN 755 TG+I ++ I+SESS+ AG+RRIEAITG + + + L L + LKV+ Sbjct: 673 TGKIGMVRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAPDLKVAIRK 732 Query: 756 VVGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812 + +++ EE+ K + K +L N ++++ K+ I + + +K + Sbjct: 733 YIDENAGLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKA------IIPMSADVVKDI 786 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 L+ +I + + +++G K + ++++EDL+ NA L R +AK++ GGGGG+ Sbjct: 787 AFQLKGEIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLI-QGGGGGQ 845 Query: 872 PHMAQSGGPNGNKADQAIAGV 892 PH A +GG N + + A+ V Sbjct: 846 PHFATAGGKNPDGLNAAVDKV 866 >gi|307326782|ref|ZP_07605974.1| alanyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113] gi|306887545|gb|EFN18539.1| alanyl-tRNA synthetase [Streptomyces violaceusniger Tu 4113] Length = 890 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 346/930 (37%), Positives = 516/930 (55%), Gaps = 94/930 (10%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + +V Sbjct: 4 AEIRRRWLRFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRAVSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT + Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTSSQEEGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL+ITVY++D+EA ++W+++ G+ A++I R+ N+WSM GPCGPCSEI +D+ Sbjct: 119 LDPERLWITVYEQDDEAERIWREVIGVPAERIQRLGMGPNYWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEG------ERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTG 227 G P EEG ERY+EIWNLVFMQ+E+ +E F LP +IDTG Sbjct: 179 G-------PEFGEEGGPAVNDERYVEIWNLVFMQYERGAGEGKENFPILGELPSKNIDTG 231 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285 +GLER+A +LQ N Y+ D + ++ + ++TG+ Y + V+ RV+ DH+R+S L Sbjct: 232 LGLERLAMILQGVRNMYETDTLRVVMDKATELTGVAYGAAHESDVSLRVVADHMRTSVML 291 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG+ P NEGRGYVLRRIMRRA+ R+LG TEP++ L+ + MG YPEL+ + Sbjct: 292 IGDGVTPGNEGRGYVLRRIMRRAIRNMRILGATEPVVGELVDVVLKTMGQQYPELLTDRK 351 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE +E+ F KTL G +LD + + +L GD AF L+DT G P+D+ + Sbjct: 352 RIETVALAEESAFLKTLKAGTNILDTAVTDTKAAGGSVLAGDKAFLLHDTWGFPIDLTLE 411 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDL 462 + +GL+ +D F + ++EQR RA+A + +G + + + + G T+F GY Sbjct: 412 MAAEQGLS-VDEAGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADSSGLTEFTGY-- 468 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 T G S+IV +V G A G +VEVV D+TPFYA Sbjct: 469 --------------------SHTEGESTIVGLLV-DGVSSPAAGEGDEVEVVLDRTPFYA 507 Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQL DTG + G +++ DVQ+ G+ VH +V+ G + + ID RR Sbjct: 508 EGGGQLADTGRITLDTGAVVEVRDVQQPVPGVSVHKGVVQVGEVTVGAGVHARIDITRRR 567 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ HSATHL H AL LG +Q GS +P RFD + L +E +N+ Sbjct: 568 AIARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGGVLMDVEQKINE 627 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 ++++ L V +M+ ++A GA A G KY DRVRVV++ G S LCGGTHV + Sbjct: 628 VLSRELDVSAEVMSMDEAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHN 682 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T ++ L+ ++ ESSI +G+RR+EA+ G A + L + + L +K GR E Sbjct: 683 TAQLGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSQLTDLVK-------GRPE 735 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA-----------DVNFMSHIISEV----DS 806 E+ E+ ++ ++ + +E K+ DV + + ++V + Sbjct: 736 ELPEKISG--MLGKLKEAEKEIERFRAEKVLQAAAGLAQGAKDVRGTALVAAKVPDGTSA 793 Query: 807 KELKSVMDALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKV 862 +L+ ++ ++ +I + ++ L ++ + +V I E +R A DL R +AK Sbjct: 794 DDLRKLVLDVRGRIPGDRPAVVALFTVAGGRPLTV-IATNEAARERGLKAGDLVRTAAKT 852 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 L GGGGGG+P +AQ GG N + +AI V Sbjct: 853 L-GGGGGGKPDVAQGGGQNPDAVGEAIEAV 881 >gi|299782999|gb|ADJ40997.1| Alanyl-tRNA synthase [Lactobacillus fermentum CECT 5716] Length = 882 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 329/922 (35%), Positives = 503/922 (54%), Gaps = 77/922 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR +L+FF ++GH +PS SL+P NDPTL++ NSG+ KN F G+ P +T Sbjct: 8 NSAQIRRMYLDFFVQHGHTEMPSRSLVPVNDPTLLWINSGVATMKNYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RHHT FEM+GNFS G YFK+ AI AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMMGNFSVGDYFKKEAITWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A + W +G+ D ++ DNFW + + GP GP +E+F+D+G Sbjct: 124 DPERLYITYYPKDNDAHQFWLD-AGVKEDHLL--ADQDNFWDIGQ-GPSGPDTEVFYDRG 179 Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + + P PG E ERY+EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 180 QEMNNLPEDDPESYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPNKNIDTGMGLERV 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290 ++ + N++ DLF LI+ E + K G N V ++I DH+RS +F I DG Sbjct: 238 VSIFENAKTNFETDLFMPLIKQVEGFSADKQYGQNAADDVQFKIIADHIRSITFAIGDGA 297 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYV+RR++RR++ + LG EP + ++P + M YP++++ I Sbjct: 298 LPSNVGRGYVIRRLLRRSVVAGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASV 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + SE++RF RGL LL+ V+ + + ++G AFKLYDT+G P+++ ++ Sbjct: 358 ISSEEDRFSADFKRGLSLLNSVIDEAKQTDGKQIDGKTAFKLYDTYGFPVELTREYAADE 417 Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F A+ EQ++RAR A + G G +W + ++ ++++GY + Sbjct: 418 GLT-VDEQGFEAAMTEQQNRARNARDMDNGMGVQSDLWTNFTDE---SKYVGY-----TD 468 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + ++ KV+ + G+ ++A GQ V+V+FDQTPFYAE GGQ Sbjct: 469 LVVDNAKVI-----------------GLAADGKQADQAEPGQHVDVIFDQTPFYAEMGGQ 511 Query: 528 LGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 + DTG I + + + DVQ + H + ++ L +D ++ Sbjct: 512 VADTGQVIDNYGKVVATVKDVQHAPHQQNL-HTLELTAPIKKGARYKLVVDRARHLKIEK 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLL AL +LG H Q GS + LRFD H +T +LK +ED VN+ I + Sbjct: 571 NHTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTKEDLKKVEDMVNEQIWK 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +PV T + + A GA AL KY D+VRVV + G ++ CGG HV +T EI Sbjct: 631 EIPVTTVETDIDSAKKMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGGDHVKNTNEI 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L IVSE + AG+RRIEA+T A + + + + L +A+ LKV+Q V RV E+ Sbjct: 686 GLFKIVSEGGVGAGVRRIEAVTSSDAFAFMQERVDSLDHIAADLKVAQVKEVAHRVSELQ 745 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-------IISEVD---SKELKSVMD 814 + QL A ++ + L+ + DV + I +EV +L+ + D Sbjct: 746 D-----QLKEATKQNEALQAKLAAQQAGDVFNQAEETAKGTLIAAEVKVAGMDQLRQMAD 800 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 ++K S +++L + + KA++L+ V + L A DL + A + GGGGGRP + Sbjct: 801 DWRQKDYSDVLVLATAAGD-KANLLVAVKDGLAKTVKAGDLIKAIAPAI-NGGGGGRPTL 858 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 AQ+GG N +A+ + F+ Sbjct: 859 AQAGGKNPAGISEALKLASQFM 880 >gi|227888705|ref|ZP_04006510.1| alanyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200] gi|227850732|gb|EEJ60818.1| alanyl-tRNA synthetase [Lactobacillus johnsonii ATCC 33200] Length = 892 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 348/918 (37%), Positives = 517/918 (56%), Gaps = 81/918 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH ++ S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 17 SQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 76 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K LD Sbjct: 77 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 132 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 133 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 189 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF QF + P +IDTGMGLER+ + Sbjct: 190 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 247 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I+ +E+++ G KY N + V ++I DH+R+ SF IADG LP Sbjct: 248 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 307 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+P + M S YPE+++ + I++ ++ Sbjct: 308 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVEQQAFIQKVIK 367 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF TL GL LLD +++ K D+ ++G AFKL+DT+G P ++ + GL Sbjct: 368 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDAGL 427 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465 ID F++ ++ Q+ RAR L S G+ + ++K+K YG Sbjct: 428 K-IDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 475 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++E L IV ++V++A G+ ++FD+TPFYAE G Sbjct: 476 ---LEEKHAKLID----------------IVVDDKLVDKA-DGEHATLIFDKTPFYAERG 515 Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581 GQ+ D G + L ++TDVQ +H V IL E VL +D + RR Sbjct: 516 GQVADHGEILNQNGELVARVTDVQHAPNDQNLHFVDV---ILPLEKGQEYVLKVDQKRRR 572 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ S+E VN+ Sbjct: 573 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNE 632 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + + + GA AL G KY D VRVV ++ S+ CGGTH + Sbjct: 633 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 687 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760 T +I +L IVSES++ AG RRI A+TG A ++ +DE LK + +K ++ +VV ++ Sbjct: 688 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKI 747 Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814 I + R Q + K Q+N DL + I V ++ I ++ D + +L+ + D Sbjct: 748 SSIEADLRASQKEAEQLKAQINKAKAGDL-FNDIKQVKDLTVIAAQADVEGMNDLRELAD 806 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + +S +++L K V+ + + + A DL + +A + GGGGGGRP+M Sbjct: 807 NWKSSNKSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 865 Query: 875 AQSGGPNGNKADQAIAGV 892 AQ+GG N AIA V Sbjct: 866 AQAGGKNPAGLKAAIAKV 883 >gi|94986300|ref|YP_605664.1| alanyl-tRNA synthetase [Deinococcus geothermalis DSM 11300] gi|205830044|sp|Q1IW89|SYA_DEIGD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94556581|gb|ABF46495.1| alanyl-tRNA synthetase [Deinococcus geothermalis DSM 11300] Length = 885 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 334/866 (38%), Positives = 480/866 (55%), Gaps = 77/866 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK--PVY-- 58 + IR FL FF+ GH LPS SLI DPT +FT +GM PFK F G P Y Sbjct: 6 TTAEIREKFLSFFESKGHLRLPSHSLI-APDPTTLFTVAGMQPFKPQFMGAPAKFPGYGE 64 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + VTT QKC+R G D++NVGRT RH + FEM+GNFSFG YFK AI AW+ LT Sbjct: 65 NRRVTTAQKCIRVG----DIENVGRTRRHLSLFEMMGNFSFGDYFKREAILWAWEFLTSP 120 Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCG 170 +D R+Y+T+Y++D EAF W + GL D I R ++NFW + GPCG Sbjct: 121 EWLGMDPARMYVTIYEDDNEAFGYWTQDVGLPEDHIHRFGADENFWPADAPAKGPNGPCG 180 Query: 171 PCSEIFFDQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI++D+G + E R++E+WNLVF Q+++Q+ LP +IDTG Sbjct: 181 PCSEIYYDRGPHYGDDTWADYAQTRESARFLEVWNLVFPQYDRQDGGVLADLPFKNIDTG 240 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIA 287 MGLER+A+V+Q+ + Y D+F+ L++ +++G YEG V+HRV+ +H+RS + IA Sbjct: 241 MGLERVASVVQDVPDFYSNDVFRPLVEKVAELSGKPYEGEVSVSHRVVAEHIRSVAMTIA 300 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ +N GRGYV+R+I+RRA +A LLG EP + L+P + MG AYPEL+ + + Sbjct: 301 DGVALSNTGRGYVIRKILRRASRHAYLLGLHEPTLYRLVPLVVQAMGGAYPELVTEEARV 360 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +R+E+ERF KTL+ G+ L G+L + + +L G+ AF LYDT+G PLD+ ++I Sbjct: 361 TAAIRAEEERFLKTLESGMQRLSGLLEGMERGAVLPGEEAFLLYDTYGFPLDLTKEIAEE 420 Query: 408 RGLAGIDIISFNQALEEQRSRARAHS----LGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 G++ ++ + ++LE + ARA S L G+ E + E TQF+GYD L Sbjct: 421 YGIS-VNEAEYAESLERAQETARAASKYGKSELFGGSQEAL-----EGLPPTQFVGYDEL 474 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 V A+V GE ++ ++G + VV +TPFYAE Sbjct: 475 E-----------------------AQGEVLALVGAGERLDHLMAGSEATVVLSRTPFYAE 511 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GG++GDTG +G R + D +K GI++H +VE G L T V + R+ + Sbjct: 512 GGGEVGDTGVLEWEGGRGLVRDTRKTPAGIWLHDVLVEEGEL-TPGVTVRGVVSSERQAI 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 +H+ATHLLH AL +LG V Q GS + P+ LRFD TH +T+ EL +E V+ + Sbjct: 571 QRHHTATHLLHAALRAVLGPGVRQAGSLVAPERLRFDFTHGAALTADELGQVERLVSRWV 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHV 699 N PV R M +A A+GA AL G KY D VRVV VE + D V S LCGG HV Sbjct: 631 TANFPVTWREMPLAEAKAAGATALFGEKYGDTVRVVRVEGGIPFGDATVTSMELCGGAHV 690 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 + TG+I IVS+ ++ AG+RRIEA+ G+ A + + Q + ++ L S + R Sbjct: 691 TRTGDIGAFVIVSDENVAAGVRRIEALAGEAATAWVRAQLNNVHRVSGLLNTSPDTLETR 750 Query: 760 VEEIWEEYRKLQLIHAKRKLQL-----------NVEDLSCHKIADVNFMSHIISEVDSKE 808 V + + R Q A+ + QL V +L K+A + +S ++ E Sbjct: 751 VIGLQSQLRAAQQETAQARRQLAEAQMGGASTQQVRELGGFKVAVLR-----LSGIEGGE 805 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEK 834 L+ D L QSG + V I+ +K Sbjct: 806 LRGAADKLLD--QSGADLAV-IASDK 828 >gi|170755913|ref|YP_001782179.1| alanyl-tRNA synthetase [Clostridium botulinum B1 str. Okra] gi|205830032|sp|B1IJG7|SYA_CLOBK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169121125|gb|ACA44961.1| alanyl-tRNA synthetase [Clostridium botulinum B1 str. Okra] Length = 879 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 336/916 (36%), Positives = 527/916 (57%), Gaps = 68/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFK+ I AW+ +T+ L + Sbjct: 66 CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+G Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177 Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G +SEE ++ +E WNLVF QF++ + L +IDTGMGLERMAT++ Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295 Q +++D K ++ +++G Y+ + + ++ R+I DH+RS +F+I+DGILP+NE Sbjct: 237 QNVDTIFEVDTIKAVLDKVCELSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ Sbjct: 297 GRGYVLRRLLRRAARHGKTLGIKNTFLHNLTDIVIENCYKNYPELEEKREYIKKVIKLEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T+D G+ +L+ + + + ++L+GD AFKLYDT+G P+++ ++IL G++ I Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415 Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 D FN+ ++EQR RAR+ + +G KI ++ T F GYD L Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGSEDTILNKIDLNIN-----TDFEGYDKLE---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V S V I++ E G + +V TPFYAE GGQ+ Sbjct: 467 -------------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG D + ++ D +K G +H + G + E ++L ++ + R + NH+ Sbjct: 508 GDTGIIYNDSFKAEVIDCKKNISGKVLHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T++MN E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + Sbjct: 628 VNTKVMNIEEAKEQGAIALFDNKYKDDVRVVSV-----GNFSKELCGGTHVSNSGQIGMF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766 IVSE+ + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + Sbjct: 683 KIVSEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742 Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ ++ K KL ED + +I V S + ++D L+ + D ++ +QSG Sbjct: 743 EKEKEIEALKLKLASGAEDEILNNIREIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881 +++L G + + K + + T+D + + V ++ +V + GGGGGGRP MAQ+GG + Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKD 859 Query: 882 GNKADQAIAGVASFLK 897 NK + AI V + ++ Sbjct: 860 PNKLEDAIKTVETVVE 875 >gi|21672664|ref|NP_660731.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009285|sp|Q8K9E7|SYA_BUCAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21623301|gb|AAM67942.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 883 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 329/874 (37%), Positives = 504/874 (57%), Gaps = 65/874 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +FL FF++ H ++PSSSLIP ND TL+FTN+GM FK F GQ+K Y VTT Sbjct: 5 TNEIRQSFLNFFKEKEHVIVPSSSLIPENDSTLLFTNAGMNQFKEYFLGQKKKFYPRVTT 64 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 VQ C+R GGKHNDL+NVG T RHHTFFEMLGNFSF YFK+ AI AW+LLT K F++D Sbjct: 65 VQNCLRTGGKHNDLENVGYTKRHHTFFEMLGNFSFNDYFKKEAITYAWELLTSRKWFNID 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITT-------NDNFWSMAETGPCGPCSE 174 + +L+I+VY++DEE +K+W+ I + I++I + ++NFW M ETGPCGPC+E Sbjct: 125 KNKLWISVYEDDEETYKIWRDIIRIPCHHIVKIGSKNNSQYDSENFWQMGETGPCGPCTE 184 Query: 175 IFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 IF++ + ++ E +IEIWN+VF++F + +K + L SIDTGMGLER++ Sbjct: 185 IFYNYDDSNKSN-DFLKDKNESFIEIWNIVFIEFNRISKTKIVPLINKSIDTGMGLERIS 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 VLQ +NY ID+F+ LIQ T +K + NNI + ++I DH+RS +FLIA+ ILP+N Sbjct: 244 AVLQNVHSNYKIDIFQKLIQKISNFTEIK-DLNNI-SLKIIADHIRSCAFLIAENILPSN 301 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 E RGYVLRRI+RRA+ + +G L+P+L MG + L + + +IEETL+ E Sbjct: 302 EHRGYVLRRIIRRALRHGHKIGIKNNFFYKLVPSLIEIMGDSAKILRKKEKIIEETLKIE 361 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + +F +TLD+GL +L+ + ++ ++G AF LYDT G P+D+ DI C+ ID Sbjct: 362 EIQFSQTLDKGLKILNAEIKK-STNKTISGKTAFYLYDTFGFPIDLTSDI-CSEKNIKID 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 FN A EEQ+ R+ S+K K+ D++ + E K Sbjct: 420 FKGFNIAKEEQKKRS-----------------SIKNKFYKDY--NKDIIINDTCIFEGYK 460 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 N S+VK I + E V GQ + D+T FY E+GGQ+GD G Sbjct: 461 ----------KNKTKSLVKYIFIKNESVFLIYKGQTATIFLDKTSFYPESGGQIGDIGEL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 R + + +K + I H+ + G + S+ I++ R + +NHSATHLLH Sbjct: 511 YHKKSRFIVENTKKYGDTI-GHYGKLISGKIIVNDSIYSKINHVYRNAIQLNHSATHLLH 569 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG + Q GS ++ LRFD ++S I +++++IE+ +N I N + + + Sbjct: 570 AALQKVLGKNAIQKGSLVSNTHLRFDFSYSGNINLSQIQNIENIINKKIRSNDLIKIKNL 629 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A A AL KY VRVV ++ S LCGGTH TG I L I+ +S Sbjct: 630 SLEEAKKKKAIALFDYKYQSSVRVVFIK-----DFSIELCGGTHTKRTGNIGLFKIIEQS 684 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG----------NVVGRVEEIW 764 S+ +GI+RIEA+TGQ+A +L +D +++++ LK V ++E+ Sbjct: 685 SVSSGIKRIEAVTGQQAIDYLHIKDNDMQNISFLLKCQNSKITEKIKKIIIQVEKLEKKT 744 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 ++ +K + I+ +KL + + I +N + + + D K +K ++D L+K+++ I Sbjct: 745 DQLQKRENIYQIKKLSKKINN-----IKGINLLINTFTNYDQKSMKMIIDQLKKELKISI 799 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 I+ + +K +V+I VT++L++ A+ + + Sbjct: 800 IIFINKNKN-DFTVIIRVTKNLINYITALKIINI 832 >gi|258648967|ref|ZP_05736436.1| alanine--tRNA ligase [Prevotella tannerae ATCC 51259] gi|260850577|gb|EEX70446.1| alanine--tRNA ligase [Prevotella tannerae ATCC 51259] Length = 874 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 344/926 (37%), Positives = 501/926 (54%), Gaps = 91/926 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G +P + T Sbjct: 3 ANEIRESFKRFFESKGHLIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGHREPKSRRQTD 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI+ A++ L +D Sbjct: 63 SQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEEAIEFAYEYLVGVLKIDPA 122 Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 LY+TV++ D+EA +W + D II +DNFW M ETGPCGPCSEI Sbjct: 123 NLYVTVFEGSPDEGLSRDDEAAAIWGR--HFPEDHIINGNKHDNFWEMGETGPCGPCSEI 180 Query: 176 FFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 D + + G +++ + IEIWNLVFMQ+ ++ LP+ IDTGMG E Sbjct: 181 HIDIRSAEEKAAVAGRELINKDHPQVIEIWNLVFMQYNRKADGTLDALPQRVIDTGMGFE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 R+ V+Q K +NYD D+F+ ++ +++G +Y + RVI DHLR+ SF IADG Sbjct: 241 RLCMVMQGKQSNYDTDVFRPILNKIAELSGRRYGESTETDIAMRVIADHLRAISFSIADG 300 Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+N GYV+RRI+RRA+ YA L E M L+P L EMG AYPEL + LI Sbjct: 301 QLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFMYRLVPTLVEEMGEAYPELAAQRDLIT 360 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 ++ E++ F +TL G+ LL+GV+ G ++ G+ AF L+DT+G PLD+ + ++C Sbjct: 361 RVMKEEEDSFLRTLATGISLLEGVMKETKDGGSSVVKGEKAFTLFDTYGFPLDLTE-LIC 419 Query: 407 ARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 A +D FN ++ Q+ RAR A S+ G W L E G + F+G+D LR Sbjct: 420 AENGLKVDEDGFNVEMQRQKERARSAASVETGD------WVILSE--GESHFVGWDTLRQ 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + RKV +K E+V D TPFYAE G Sbjct: 472 ACHILRYRKVQQKKQTY----------------------------YELVIDTTPFYAEMG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD+G ++I D K+ + +H + +R + +D RR Sbjct: 504 GQVGDSGVLRSANETVEIFDT-KQENNLSIH--LTKRLPENPAAEFMAEVDEAARRSCEA 560 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLL AL +LG+HV Q GS +TP LRFD++H + +T EL+ +E +N I + Sbjct: 561 NHSATHLLDQALREVLGAHVEQKGSLVTPTYLRFDLSHYQKVTPEELRQVERIINRRIRE 620 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++P+ R + E+A GA AL G KY DRVRVV + S CGG HV STG Sbjct: 621 DIPLQDHRDVPIEEAKRMGAIALFGEKYGDRVRVVQFD------KSVEFCGGCHVRSTGR 674 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGNVVG 758 I L IVSESS+ AGIRRIEA+T + A Q + L L + + V+ N + Sbjct: 675 IGLFRIVSESSVAAGIRRIEAVTAEAAEEMCYRQHDTLNDLRALFNNVKDISVAVHNAIE 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIA----DVNFMSHIISEVDSKEL-KS 811 +E+ +E K +QL V++L KIA D+ + +++ + + +L K Sbjct: 735 ENDELKKEVEKF--------MQLRVKELGKELMKIAENRGDIKLLKYVVKDEWAPDLIKD 786 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGGGGGG 869 + L ++ + ++G + K + +++++ L++ + NA L R +AK++ GGGGG Sbjct: 787 LAFQLSAQLPENLFCVIGSHQGGKPLLTVMISKQLVESKQLNAGQLVREAAKLIKGGGGG 846 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASF 895 PH A +GG + N A+ V Sbjct: 847 A-PHFATAGGKDLNGLTAAVDKVVEL 871 >gi|150004460|ref|YP_001299204.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482] gi|205829986|sp|A6L1L8|SYA_BACV8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149932884|gb|ABR39582.1| alanyl-tRNA synthetase [Bacteroides vulgatus ATCC 8482] Length = 871 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 343/915 (37%), Positives = 513/915 (56%), Gaps = 84/915 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ V QK Sbjct: 6 IRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKRVADSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L +D + LY Sbjct: 66 CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKIDPKDLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 TV+ + D EA W++ L D I+ +DNFW M +TGPCGPCSEI D Sbjct: 126 ATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPCSEIHID 183 Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + E +PG+ +++ + IEIWNLVFMQF ++ LP IDTGMG ER+ Sbjct: 184 SRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGMGFERLV 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292 LQ KT+NYD D+F+ +++A ++ G Y +N + RVI DH+R+ +F I DG LP Sbjct: 244 RTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSITDGQLP 303 Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 +N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K LIE+ + Sbjct: 304 SNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKTLIEKVI 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E+E F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + IL Sbjct: 364 KEEEESFLRTLETGIRLLDKTMNDAKAAGKKEI-SGVDAFTLYDTFGFPLDLTELILREN 422 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ ++ FN +++Q+ RAR ++ + +G W ++KE G T F+GYD F Sbjct: 423 GMT-VNEEEFNAEMQKQKERAR-NAAAVETGD----WITIKE--GDTHFVGYD------F 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + +L + I Q+ + + ++V TPFYAE+GGQ+ Sbjct: 469 TEYETSILR--------------YRQIKQKNQTL--------YQIVLSDTPFYAESGGQV 506 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG + + ++I D KK + +H I ++ ++ ++ +D + R + NHS Sbjct: 507 GDTGVIVSEFETIEIIDT-KKENNLPIH--ITKKLPEHLDVPMMACVDTEKRAACAANHS 563 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN I +N+P Sbjct: 564 CTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDEQLREVEHLVNAKIRENIP 623 Query: 649 VVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + R + E A GA AL G KY D VRVV +S CGGTHV +TG+I + Sbjct: 624 LTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------NSIEFCGGTHVPATGKIGM 677 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGNVVGR-- 759 + I+SESS+ AG+RRIEAITG + + + L L + LKV+ + Sbjct: 678 VRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAPDLKVAIRKYIDENA 737 Query: 760 -VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +++ EE+ K + K +L N ++++ K+ I + + +K + L+ Sbjct: 738 GLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKA------IIPMSADVVKDIAFQLKG 791 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +I + + +++G K + ++++EDL+ NA L R +AK++ GGGGG+PH A + Sbjct: 792 EIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLI-QGGGGGQPHFATA 850 Query: 878 GGPNGNKADQAIAGV 892 GG N + + A+ V Sbjct: 851 GGKNPDGLNAAVDKV 865 >gi|256379272|ref|YP_003102932.1| alanyl-tRNA synthetase [Actinosynnema mirum DSM 43827] gi|255923575|gb|ACU39086.1| alanyl-tRNA synthetase [Actinosynnema mirum DSM 43827] Length = 890 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 343/923 (37%), Positives = 505/923 (54%), Gaps = 82/923 (8%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 F E F+ GH ++PS+SL+ +DP L+F N+GMVPFK F G+ ++ T+VQKCVR Sbjct: 10 FREHFENAGHAVVPSASLL-LDDPNLLFVNAGMVPFKPYFLGEAPSPHKRATSVQKCVRT 68 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LDQRRL 125 D+D VG+T RH TFF+M GNFSFG YFKE AI+LAWDL+TK D D RL Sbjct: 69 ----PDIDEVGKTTRHLTFFQMAGNFSFGDYFKEDAIRLAWDLVTKSQDDGGYGFDPERL 124 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++TVY +D+EA LW+KI+GL ++I R DN+WSM GPCGPCSEI++D+G G Sbjct: 125 WVTVYLDDDEAADLWQKIAGLPPERIQRRDVEDNYWSMGVPGPCGPCSEIYYDRGPEF-G 183 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGMGLERMATVLQE 239 G + +RY+EIWNLVFMQ E+ K++ IL P +IDTGMG+ER+A +LQ Sbjct: 184 AEGGPVVDEDRYLEIWNLVFMQNERGAGGAKRDYPILGELPSKNIDTGMGVERVAFLLQG 243 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N Y+ DL + +I +E+++G KY N + V RVI DH RS L+ DG+ P NE R Sbjct: 244 VDNVYETDLVRAVITKAEELSGRKYGDNPTDDVRFRVIADHARSGVLLVGDGVTPGNEAR 303 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RR + +RLLG TEP++ + MG +YPEL+ IE+ L++E++ Sbjct: 304 GYVLRRLLRRIVRSSRLLGVTEPVLQTFAAVVRDTMGPSYPELVSGFARIEQVLKAEEDT 363 Query: 358 FGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F +TLD G + + G + G+ IL GD AF+L+DT+G P+D+ ++ GL +D Sbjct: 364 FLRTLDAGSRIFETAAGTVKSQGR-AILPGDKAFQLHDTYGFPIDLTLEMASEAGLT-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + + EQR+RA+A + G +G ++ + + GAT+F GY L Sbjct: 422 EDGFRKLMAEQRARAKADAAGKKTGHGDQTVYRELLELGATEFTGYTEL----------- 470 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++++ IV G+ V+ A G VEVV D+TP YAE+GGQ D G Sbjct: 471 ------------ASEAVLRGIVSGGKRVKSAREGDIVEVVLDRTPLYAESGGQESDAGVI 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + G L++ DVQK A ++VH V G + + +D + R HS TH++H Sbjct: 519 VSGGAELEVVDVQKVARKLWVHQVRVVSGEIAEGEKVEARVDAEWRVGARQGHSGTHVVH 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG Q+GS P LR D + ++ + IE+ N + ++LPV Sbjct: 579 AALRQVLGPSALQSGSYNKPGYLRLDFAWTGGLSESTRSEIEEVSNLAVRKDLPVSVVYT 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + A GA AL G Y++ VRVV + GG S LCGGTHV + +I + ++ ES Sbjct: 639 DMGGAQEMGAVALFGETYDETVRVVEI----GGRWSRELCGGTHVEHSSQIGPITVIGES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI----------W 764 S+ +G+RR+EA G A +L + ++++A+ LKV V GRVE + Sbjct: 695 SVGSGVRRLEAYVGIEAFKYLARERALVQNVAAMLKVPDAEVPGRVEALVERLRVAEKEL 754 Query: 765 EEYRKLQLIHAKRKL---QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 E+ R QL+ + L L+V +S +A S + E++ M + Sbjct: 755 EKVRSAQLVASAGSLVSQALDVRGVSVLALALPEGTSGADVRAIASEVRGRM-----ADK 809 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMA 875 G++ L +K + V+ A DL + K++ GG GGG+P +A Sbjct: 810 PGVVALFAPDGDKVSFVVATTA-------GARDLGLAAGKLVPAFAPAVGGRGGGKPDLA 862 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q GG N QA+A V + +++ Sbjct: 863 QGGGTNPAGVPQAVAAVLAEVER 885 >gi|319644298|ref|ZP_07998792.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A] gi|317384193|gb|EFV65166.1| alanyl-tRNA synthetase [Bacteroides sp. 3_1_40A] Length = 871 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 343/915 (37%), Positives = 513/915 (56%), Gaps = 84/915 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +F FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ V QK Sbjct: 6 IRDSFKSFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKRVADSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L +D + LY Sbjct: 66 CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIGWAWEYLVDVLKIDPKDLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 TV+ + D EA W++ L D I+ +DNFW M +TGPCGPCSEI D Sbjct: 126 ATVFEGSPEEGLERDNEAASYWEQF--LPKDHILNGNKHDNFWEMGDTGPCGPCSEIHID 183 Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + E +PG+ +++ + IEIWNLVFMQF ++ LP IDTGMG ER+ Sbjct: 184 SRSEEEKAQIPGNQLVNKDHPQVIEIWNLVFMQFNRKADGSLEGLPAKVIDTGMGFERLV 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292 LQ KT+NYD D+F+ +++A ++ G Y +N + RVI DH+R+ +F I DG LP Sbjct: 244 RTLQGKTSNYDTDVFQPILKAIAEMAGTTYGQDNQKDIAMRVIADHIRTIAFSITDGQLP 303 Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 +N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL K LIE+ + Sbjct: 304 SNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELNAQKTLIEKVI 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E+E F +TL+ G+ LLD ++ GK EI +G AF LYDT G PLD+ + IL Sbjct: 364 KEEEESFLRTLETGIRLLDKTMNDAKAAGKKEI-SGVDAFTLYDTFGFPLDLTELILREN 422 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ ++ FN +++Q+ RAR ++ + +G W ++KE G T F+GYD F Sbjct: 423 GMT-VNEEEFNAEMQKQKERAR-NAAAVETGD----WITIKE--GDTHFVGYD------F 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + +L + I Q+ + + ++V TPFYAE+GGQ+ Sbjct: 469 TEYETSILR--------------YRQIKQKNQTL--------YQIVLSDTPFYAESGGQV 506 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG + + ++I D KK + +H I ++ ++ ++ +D + R + NHS Sbjct: 507 GDTGVIVSEFETIEIIDT-KKENNLPIH--ITKKLPEHLDVPMMACVDTEKRAACAANHS 563 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN I +N+P Sbjct: 564 CTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTDKQLREVEHLVNAKIRENIP 623 Query: 649 VVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + R + E A GA AL G KY D VRVV +S CGGTHV +TG+I + Sbjct: 624 LTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------NSIEFCGGTHVPATGKIGM 677 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF------LKVSQGNVVGR-- 759 + I+SESS+ AG+RRIEAITG + + + L L + LKV+ + Sbjct: 678 VRIISESSVAAGVRRIEAITGAKVEELMDTVQDTLNDLKALFNNAPDLKVAIRKYIDENA 737 Query: 760 -VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +++ EE+ K + K +L N ++++ K+ I + + +K + L+ Sbjct: 738 GLKKQVEEFMKEKGAALKARLVENAKEINGVKVVKA------IIPMSADVVKDIAFQLKG 791 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +I + + +++G K + ++++EDL+ NA L R +AK++ GGGGG+PH A + Sbjct: 792 EIPANLFVVIGSVDNNKPMLTVMISEDLVKAGQNAGKLVREAAKLI-QGGGGGQPHFATA 850 Query: 878 GGPNGNKADQAIAGV 892 GG N + + A+ V Sbjct: 851 GGKNPDGLNAAVDKV 865 >gi|210633873|ref|ZP_03297888.1| hypothetical protein COLSTE_01805 [Collinsella stercoris DSM 13279] gi|210159042|gb|EEA90013.1| hypothetical protein COLSTE_01805 [Collinsella stercoris DSM 13279] Length = 884 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 344/894 (38%), Positives = 507/894 (56%), Gaps = 50/894 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR+ +L FF+ G +L PSSSL+P +DP+L+ N+GM FK + G++ Sbjct: 9 TTAEIRSAYLNFFESKGCKLYPSSSLVP-DDPSLLLANAGMNQFKEFYQGKKVMKEIGAC 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKCVR ND+D +G RH +FFEMLGNF+FGG K +A A++L+T+ F L + Sbjct: 68 SCQKCVRT----NDIDIIGADGRHASFFEMLGNFAFGGVTKGQACAWAYELITEVFKLPK 123 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY TV+ ED+E +W+ + G+ D I R+ +DNFW+ TGPCGPCSEI+FD GE Sbjct: 124 DRLYFTVFTEDDETEAVWRSL-GVEPDHITRLGEDDNFWAAGPTGPCGPCSEIYFDLGEE 182 Query: 183 IPGGL----PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + G PG + +R++E WNLVF QF++Q LP ++DTGMGLERMA ++Q Sbjct: 183 VGCGCDTCAPGC--DCDRFLEFWNLVFTQFDRQEDGSMPELPHRNLDTGMGLERMAAIMQ 240 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH----RVIVDHLRSSSFLIADGILPAN 294 K++ +D D+ + LI+ E ++G Y ++ R+I DH RS +FLI+DG+LP N Sbjct: 241 HKSSFFDGDVMQSLIKLGEDISGKTYVDDDYTGASRSLRIIADHARSVNFLISDGVLPGN 300 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ + RLLG + + + A+ MG AYP L++ L++ + +E Sbjct: 301 EGRGYVLRRLLRRAVFHGRLLGIEDAFLGRFIDAVNDVMGDAYPSLLENVGLVKGIVEAE 360 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +ERF TL+ G V LD LS L + E L G AF L+DT G P+D+ +I G A +D Sbjct: 361 EERFSTTLNNGRVYLDEQLSALAEGEQLPGSAAFMLHDTFGFPIDLTVEIAEGAGHA-VD 419 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 I FN + EQ++RARA + G G+ +W L ++ AT+F+GYD Sbjct: 420 IEGFNAEMAEQKARARAAAKGDAWGSFNDVWTELADQLPATEFVGYD------------- 466 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 I+ + V AIV GE VE A + + VV D+TP YAE GGQ+GD G Sbjct: 467 ----NESIE-----GAHVLAIVVNGERVERAENAAEAAVVLDRTPLYAEMGGQMGDHGLI 517 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D + +++ K G++VH + G L ++ D R L NH+ATHLL Sbjct: 518 DTDDAQFFVSNTTAKG-GLYVHEGKL-IGALSEGDTVFAGYDLNRRGLLCRNHTATHLLD 575 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV+Q GS ++P+ LRFD TH + +TS +++++ED VN+ I PVVT++M Sbjct: 576 AALKEVLGDHVNQAGSLVSPENLRFDFTHFEAMTSEQIRAVEDLVNEQILAAQPVVTQVM 635 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A ASGA AL G KY V V E S LCGGTH +T E+ L IVSES Sbjct: 636 GIDEAKASGAVALFGEKYG-GVVRVVSVGEGAEPFSRELCGGTHAKNTAELGLFKIVSES 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QL 772 S + +RRIEA+T A ++L + ++ A+ LK V RV + E R++ +L Sbjct: 695 STGSNVRRIEAVTSTGAIAYLEERAALAETAAASLKCRVEEVPARVHALQAELREVNQKL 754 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVG 829 A + + D+ +++E +++ +L++V D ++ K+ S ++ Sbjct: 755 KKALTGGSSDAIASAIDAAVDMGGYQLVVAELSGLEAADLRNVWDTIRGKLSSACACVLA 814 Query: 830 ISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 EK LI D F+A ++ + A ++ G GGGRP MAQ+GG N Sbjct: 815 TVTEKGTPALIAAATDDAAAAGFHAGNVIKQIAPLV-DGRGGGRPTMAQAGGKN 867 >gi|295106657|emb|CBL04200.1| alanyl-tRNA synthetase [Gordonibacter pamelaeae 7-10-1-b] Length = 882 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 316/870 (36%), Positives = 486/870 (55%), Gaps = 65/870 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPVYQ 59 + + IR +L +F+ G + PSSSLIP +DP+L+ T++GMV FK F Q E P Y Sbjct: 5 STAEIREKYLSYFEAKGCKRWPSSSLIP-DDPSLLLTSAGMVQFKPYFLQQKQLEAP-YV 62 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 TT QKCVR ND+D +G T RH +FFEMLGNFSFG YFK+ A++ T+ Sbjct: 63 GTTTAQKCVRT----NDIDIIGTTGRHLSFFEMLGNFSFGAYFKKEMCAWAYEFSTEVLG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L RLY TVY +D+E ++WK + G+ D I R+ DNFW TGPCGPCSEI++DQ Sbjct: 119 LPAERLYFTVYLDDDETIEIWKGL-GVPEDHISRLGEEDNFWRAGPTGPCGPCSEIYYDQ 177 Query: 180 GECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GE G P + + +R++E WNLVF Q++ Q LPK +IDTGMGLER+A ++ Sbjct: 178 GEEFGCGSPDCAPGCDCDRFLEYWNLVFTQYDGQEDGSFVPLPKKNIDTGMGLERIAAIM 237 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q +NY+ D+ + L+ E++TG Y + + ++ R++ DH RS +F+IADGILP+NE Sbjct: 238 QGVQSNYETDVLRSLVGVGERLTGAVYGADADADLSLRIMADHSRSVTFMIADGILPSNE 297 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ LLG +P + + + MG YPE+++ + L + SE+ Sbjct: 298 GRGYVLRRLLRRAVMKGHLLGLDKPFLNEYVDEIVNLMGDVYPEIVENRELARRVILSEE 357 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 ERFG TL +G LD L+ + + E+L GD AF L+DT+G P+++ +++ RG+ +D+ Sbjct: 358 ERFGATLRQGRAFLDEALAGI-EGEVLPGDRAFTLHDTYGFPVEVTRELCGERGIE-VDM 415 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-------LKEKYGATQFIGYDLLRGSKF 468 F + ++EQR RARA + + E W + + E G T+F+GY Sbjct: 416 EGFGRCMDEQRERARAAN----TKDAEAAWSTYGGVMNEILEAVGPTEFLGY-------- 463 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 N + V AIV+ G+ V+ +G++ VV D TPFYAE GGQ+ Sbjct: 464 ---------------TKNEADARVLAIVKDGQQVDVLEAGEEGRVVLDATPFYAEKGGQI 508 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV----ERGILRTEMSLVLTIDYQNRRQLS 584 GDTG DG+ + + D ++ +G+ H V G ++ ++ ID R ++ Sbjct: 509 GDTGVLAEDGVVVAVLDTKEPEKGLIAHTVKVMDEPAGGRIQVGDTVHAAIDVPRRERIR 568 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATH+LH AL +LG HV Q GS + LRFD TH + +T+ ++ +E N+ + Sbjct: 569 RNHTATHILHWALRQVLGDHVKQAGSYVADSRLRFDFTHFEAMTAEQIAEVERLANEKVM 628 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +N PV + A +G AL G KY + VRV+ +E S LCGGTHVS+T E Sbjct: 629 ENHPVRAYETSLASAREAGVMALFGEKYGEFVRVLDIEG-----FSQELCGGTHVSATSE 683 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + I SE+S+ A +RRIEA+T A +++ + +LK A L+V +V R Sbjct: 684 IGFVKITSETSVGANLRRIEAVTSFDALAYMNRVEAELKESAEALRVPLFDVSERTAANV 743 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI------ISEVDSKELKSVMDALQK 818 ++ ++LQ + + + + +S V + E D+ ++++ D L+ Sbjct: 744 KQLKELQTKMKRNRQTIADDGISALVEGAVEAKGGYPVVFGRLPEADAGQMRNAWDVLRA 803 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLD 848 ++ ++ K+ K ++L T + ++ Sbjct: 804 RLGKPGAAVLATEKDGKPTLLAAGTPEAVE 833 >gi|239623766|ref|ZP_04666797.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521797|gb|EEQ61663.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 887 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 327/853 (38%), Positives = 486/853 (56%), Gaps = 48/853 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF+ GH + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 14 VNELRRMFLEFFESKGHLAMKSFSLVPHNDNSLLLINSGMAPLKPYFTGQEIPPRKRVTT 73 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI W+ LT+ LD Sbjct: 74 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKHEAIAWTWEFLTEVVGLDAD 129 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY ED+EAF +W K G+ A +I + DNFW +GPCGPCSE+++D+GE Sbjct: 130 RLYPSVYLEDDEAFDIWNKEIGIPAGRIFKFGKEDNFWEHG-SGPCGPCSEVYYDRGEQY 188 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + E +RYIE+WN VF QF+ L +IDTGMGLER+A V+Q Sbjct: 189 GCGSPDCTVGCECDRYIEVWNNVFTQFDNDGHGHYTELEHKNIDTGMGLERLAVVVQGVD 248 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + + +D K L+ +++ +Y+ ++ V+ R++ DH++S +F+I+DGI+P+NEGRGY Sbjct: 249 SLFTVDTNKALLDRVCELSHTEYQKDHETDVSLRIVADHVKSCTFMISDGIMPSNEGRGY 308 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + R LG + L + YPEL + +++I + L E+++F Sbjct: 309 VLRRLLRRAARHGRKLGIEGRFLAELSRTVIELCKDGYPELEEKQVMIFKVLSEEEDKFN 368 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 KT+D+GL++L + + K+ L+G AFKLYDT+G PLD+ ++IL +G G+D Sbjct: 369 KTIDQGLMILGEMEEEMQKEGSRTLSGTNAFKLYDTYGFPLDLTKEILEEKGY-GVDEDG 427 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F+ A++EQ+ +AR A G ++ S+ T+F+GYD L Sbjct: 428 FDAAMKEQKEKARKARKTTNYMGADVTVYQSIDPSI-TTEFVGYDKL------------- 473 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + VS I + + E+V+ GQK V+ QTPFY GGQ GD G + Sbjct: 474 ---------SAVSRIT-VLTTEDELVQALTDGQKGTVIVGQTPFYGTMGGQQGDVGVIVN 523 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + ++ D G H I+ +G+L+ + S+ L++ +NR + NHSATHLL A Sbjct: 524 ENGEFKVEDTIHLQGGKVGHVGIMTKGMLKVDDSVTLSVCGKNRALICKNHSATHLLQKA 583 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q GS + LRFD TH +T E+K +E VN I +LPVVT IM Sbjct: 584 LRLVLGDHVEQAGSYVDAGRLRFDFTHFSAMTPEEIKKVEALVNKEIQASLPVVTEIMTL 643 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A +GA AL G KY D VRVV + G S+ LCGGTHV++T I I+SE+ I Sbjct: 644 EEAKKTGAMALFGEKYGDSVRVVEM-----GDFSTELCGGTHVANTNNIASFKILSEAGI 698 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG+RRIEA+T + + + L A K + ++ ++ + +E + L + K Sbjct: 699 AAGVRRIEALTSEGLMKYYEEMEAGLHEAAKAAKTTPAALISKIHALLDEIKSLNSENEK 758 Query: 777 RKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K +L + L ++ V ++ +S VD L+S+ D L+ K+ G+++LV Sbjct: 759 LKSRLANDSLGDVMSQVKEVNGVKVLASRVSGVDMNGLRSLGDQLKDKLGDGVVVLVS-E 817 Query: 832 KEKKASVLIVVTE 844 ++ K +++ T+ Sbjct: 818 QDGKVNLMATATD 830 >gi|148543768|ref|YP_001271138.1| alanyl-tRNA synthetase [Lactobacillus reuteri DSM 20016] gi|227363252|ref|ZP_03847384.1| alanine--tRNA ligase [Lactobacillus reuteri MM2-3] gi|325682140|ref|ZP_08161658.1| alanine--tRNA ligase [Lactobacillus reuteri MM4-1A] gi|148530802|gb|ABQ82801.1| alanyl-tRNA synthetase [Lactobacillus reuteri DSM 20016] gi|227071708|gb|EEI09999.1| alanine--tRNA ligase [Lactobacillus reuteri MM2-3] gi|324978784|gb|EGC15733.1| alanine--tRNA ligase [Lactobacillus reuteri MM4-1A] Length = 884 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 337/929 (36%), Positives = 518/929 (55%), Gaps = 85/929 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R +L+FF+++GH+++PS+SL+P NDPTL++ NSG+ K F G+ P +T Sbjct: 8 NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A+ W+++ G++ D +I DNFW + + GP GP +EIF+D+G Sbjct: 124 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 179 Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + P PG E ERY+EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 180 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290 ++ + N++ DLF LI+ +E+ +G K G N + ++I DH+R+ +F I DG Sbjct: 238 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 297 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ I Sbjct: 298 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + SE++RF TL+ GL LL+ V++ K ++G AFKLYDT+G P+++ ++ Sbjct: 358 IESEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 417 Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F A+ EQ++RAR A + G G +W S KE ++++GY Sbjct: 418 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGY------- 466 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526 DLT + ++ + G+ +EA G K +E++FD TPFYAE GG Sbjct: 467 --------------TDLTVDNAKVI-GLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGG 511 Query: 527 QLGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTID 576 Q+ DTG I + G ++ ++ DVQ HA ++ + R E++ L +D Sbjct: 512 QVADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELTAPIKKGARYKLVVD 562 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 ++ NH+ATHLL AL +LG H Q GS + LRFD H +T+ +LK +E Sbjct: 563 RIRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVE 622 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + VN+ I + +PV T + + A GA AL KY D+VRVV + G ++ CGG Sbjct: 623 NMVNEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGG 677 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 HV +T E+ L IVSE + AG+RRIEA+T A L +D+ L A+ LKV+Q Sbjct: 678 DHVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKE 737 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELK 810 V +VE + E ++ Q + + ++ + + + S I +EV +L+ Sbjct: 738 VPHQVETLQNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLR 797 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 + DA + K S +++L S + KA++L+ V++D A DL + A + GGGG Sbjct: 798 QLADAWRSKALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAI-NGGGG 855 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GRP++AQ+GG N +A++ +L K Sbjct: 856 GRPNLAQAGGKNPAGIKEALSQAKGYLDK 884 >gi|329666846|gb|AEB92794.1| alanyl-tRNA synthetase [Lactobacillus johnsonii DPC 6026] Length = 882 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 347/918 (37%), Positives = 515/918 (56%), Gaps = 81/918 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH ++ S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVMQSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKKEVIPWAWEFLTSPKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D EA+ +W + GL D I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDTEAYHMWHDVVGLPEDHIVKL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF QF + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQFNHLPNGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N++ DLF +I+ +E+++ G KY N + V ++I DH+R+ SF IADG LP Sbjct: 238 IIQDAPTNFETDLFMPIIKETEKLSDGKKYAANKEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+P + M S YPE++ + I++ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGEIMKSHYPEVVDQQAFIQKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF TL GL LLD +++ K D+ ++G AFKL+DT+G P ++ + GL Sbjct: 358 NEEERFQVTLSSGLNLLDNIIAEAKKSDDKTISGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEK----YGATQFIGYDLLRG 465 ID F++ ++ Q+ RAR L S G+ + ++K+K YG Sbjct: 418 K-IDKKGFDEEMKAQKERARKARGNLQSMGSQDVTLMNIKDKSEFEYGT----------- 465 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++E L IV ++V++A G+ ++FD+TPFYAE G Sbjct: 466 ---LEEKHAKLID----------------IVVDDKLVDKA-DGEHATLIFDKTPFYAERG 505 Query: 526 GQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRR 581 GQ+ D G + L ++ DVQ +H V IL E VL +D + RR Sbjct: 506 GQVADHGEILNQNGELVARVADVQHAPNDQNLHFVDV---ILPLEKGQEYVLKVDQKRRR 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L NH+ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ S+E VN+ Sbjct: 563 GLKHNHTATHLLHAALREVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKKEIASVEKLVNE 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + +PV T + + + + GA AL G KY D VRVV ++ S+ CGGTH + Sbjct: 623 KIWEEIPVKTTVTDPDTGLKMGALALFGEKYGDTVRVVQIDD-----FSTEFCGGTHCEN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760 T +I +L IVSES++ AG RRI A+TG A ++ +DE LK + +K ++ +VV ++ Sbjct: 678 TDQIGMLKIVSESAVGAGTRRIIAVTGPEAYKYVTDRDEILKEVQDEVKATKAEDVVNKI 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLN---VEDLSCHKIADVNFMSHIISEVDSK---ELKSVMD 814 I ++ R Q + K Q+N DL + I V ++ I + D + +L+ + D Sbjct: 738 SSIEDDLRASQKEAEQLKAQINKAKAGDL-FNDIKQVKDLTVIAVQADVEGMNDLRELAD 796 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + +S +++L K V+ + + + A DL + +A + GGGGGGRP+M Sbjct: 797 NWKSSNKSDVLVLAAEVNGKANMVISLDDKAIKAGLKAGDLIKTAAPIF-GGGGGGRPNM 855 Query: 875 AQSGGPNGNKADQAIAGV 892 AQ+GG N AIA V Sbjct: 856 AQAGGKNPAGLKDAIAKV 873 >gi|325280523|ref|YP_004253065.1| alanyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712] gi|324312332|gb|ADY32885.1| alanyl-tRNA synthetase [Odoribacter splanchnicus DSM 20712] Length = 877 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 337/910 (37%), Positives = 493/910 (54%), Gaps = 75/910 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G P ++ V Sbjct: 4 AEIRQKFLDFFESKGHTIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNINPKHRRVADS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ LT LD+ R Sbjct: 64 QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEDAIAFAWEFLTGVMGLDKNR 123 Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LY TV+ + D EA K+W ++ LS D+I+ DNFW M + GPCGPCSEI Sbjct: 124 LYATVFEGSKEDGLEGDAEARKIW--MNYLSEDRILFGNKKDNFWEMGDMGPCGPCSEIH 181 Query: 177 FD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 D + + G +++ IEIWNLVFMQ+ ++ LP +DTGMG ER Sbjct: 182 IDLRPEEERKLKSGRELVNQDNPLVIEIWNLVFMQYNRKADGSLENLPNHHVDTGMGFER 241 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 + +Q KT+NYD D+F +I +++G+KY + V RVI DHLR+ SF I DG Sbjct: 242 LCMAVQGKTSNYDTDVFTPIIDEISRLSGLKYGVSHDADVAMRVIADHLRTISFSITDGQ 301 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+N GYV+RRI+RRA+ YA L E M L+P L MG YPEL+ + LIE+ Sbjct: 302 LPSNVKAGYVIRRILRRAVRYAYTYLDQKEAFMYRLVPVLIEVMGKHYPELVAQQELIEK 361 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN--GDVAFKLYDTHGLPLDIMQDILCA 407 +R E+ F +TLD+G+ LLD ++ ++ L G+VAF+LYDT+G PLD+ + IL Sbjct: 362 VIREEENAFLRTLDKGIKLLDRIIEKTKAEDFLTIPGNVAFELYDTYGFPLDLTELILRE 421 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +GL ++ F +E Q+ R+R+ S W L + +F+GYD Sbjct: 422 KGLV-VNRREFKAEMEAQKERSRS-----ASSVDTDDWIELIDD-DVQEFVGYDYTEVEV 474 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + RKV+ + +VF+ TPFY E GGQ Sbjct: 475 KITRYRKVVTKNKTF----------------------------YHLVFNITPFYGEGGGQ 506 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD+G IG+ ++I D KK G+ +H + E+ + + +D R + NH Sbjct: 507 VGDSGVLIGEKETIRIIDT-KKENGLTIH--LAEKMPEDVTQTFIAKVDEHKRVLTANNH 563 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLL +AL +LG HV Q GS ++ + LRFD +H + +T EL + VN +I N+ Sbjct: 564 SATHLLDYALRKVLGKHVEQKGSYVSDEHLRFDFSHFQKVTDEELAEVAAIVNRLIRMNI 623 Query: 648 PVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 P+ R + A A GA A+ G KY D VRV+ S LCGGTHV +TG+I Sbjct: 624 PLEEHRSVPMAKAQAMGALAIFGEKYGDLVRVIKYG------ESVELCGGTHVPATGQIG 677 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 I+SESS+ AG+RRIEAIT +A ++ ++ + K S N++ V+ + EE Sbjct: 678 FFKILSESSVSAGVRRIEAITADKAEEYINNSFAIIREMEKMFK-SNKNLMECVKNVLEE 736 Query: 767 ---YRKLQLIHAKRKLQLNVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 +K AK L+L E L K D+N + +S + + + K + L+ + + Sbjct: 737 NEGLKKETEKFAKESLRLLKERLKNEKKVYRDINLIITNLS-IPAAQAKDIAFQLKGEYE 795 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 +I + G K + ++++ + + + NA + R +A+ + GGGGG+P A +GG Sbjct: 796 K-VIFIAGGVNAGKPHLTVMISNSIAEDYGLNAGQIVREAAQEI-KGGGGGQPFFATAGG 853 Query: 880 PNGNKADQAI 889 ++AI Sbjct: 854 AYPEGIEKAI 863 >gi|253681881|ref|ZP_04862678.1| alanine--tRNA ligase [Clostridium botulinum D str. 1873] gi|253561593|gb|EES91045.1| alanine--tRNA ligase [Clostridium botulinum D str. 1873] Length = 879 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 340/912 (37%), Positives = 524/912 (57%), Gaps = 60/912 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ GH LPS S++P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNQVREAYLKFFESKGHLRLPSFSVVPKNDKSLLLINAGMAPLKPYFTGLQTPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ T+ + + Sbjct: 66 CQKCIRTG----DIENVGKTSRHATFFEMLGNFSFGDYFKNEVIPWAWEFTTEVLKMPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQGE 181 +LY+T+Y +D+EA+ +W + + I R+ DNFW GPCGPCSEI F D GE Sbjct: 122 KLYVTIYLDDDEAYDIWTTKTDVDPKHIFRLGKEDNFWEHG-VGPCGPCSEIHFYKDNGE 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 + +R +E WNLVF QF++ L +IDTGMGLERMAT++Q Sbjct: 181 IKSVEEFIEKSDADRAVEFWNLVFTQFDKDEDGNYNRLEFPNIDTGMGLERMATIMQGVE 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 +++D + ++ + Y +++ ++ R+I DH+RS S +I+D +LP+NEGRGY Sbjct: 241 TIFEVDTIRSILDKVANLANTTYGEDSVKDMSLRIITDHVRSVSVMISDEVLPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + RLLG + ++ ++ G AYPEL + K I++ + E+ERF Sbjct: 301 VLRRLLRRAARHGRLLGIQGTFLHKIVNSVIENSGDAYPELKEKKDYIKKVISIEEERFA 360 Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D G+ +L + L K+ +L+G+ FKLYDT+G PL++ ++IL + + +D+ Sbjct: 361 ETIDSGMEILKEYIEELEKENKNVLSGEKVFKLYDTYGFPLELTEEILEEKNIT-VDMDG 419 Query: 418 FNQALEEQRSRARA-HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 FN+ ++ QR RARA S GT K+ ++ + T+F GY L Sbjct: 420 FNEEMKVQRERARAARSESTYMGTDVKVIDTIPSEI-ETKFDGYKNLE------------ 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + S +K I++ + + +G+K +V D+TPFYAE GGQ+GD G Sbjct: 467 -----------LQSKIKVIIKNDDFADCIKAGEKGIIVTDKTPFYAEMGGQIGDKGTISA 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG ++ + + G +H V G ++ ++L +D R +S NHS THLLH A Sbjct: 516 DGFVAKVENCKNNIGGKIIHFVEVIEGNIKLGDEVLLEVDRVRRDNVSKNHSTTHLLHAA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LG HV Q+GS + D LRFD TH + +T EL +ED VN+II++ V T M Sbjct: 576 LREVLGDHVHQSGSYVDEDKLRFDFTHFEGVTQEELTKVEDLVNNIISKVYEVETNEMTI 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 E+A SGA AL KY D+VRVV + G S LCGGTH+S+ G+I L IVSES I Sbjct: 636 EEARQSGAMALFDEKYGDKVRVVKI-----GNFSVELCGGTHISNIGKIGLFKIVSESGI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQL 772 AGIRRIEA+TG +A + + LK +A LK S+ +++ R+ E+ E+ +++ Sbjct: 691 AAGIRRIEAVTGTKALEFIKDKSNLLKEVAELLKCSEKDILNRLNQQSLELKEKEKEIAS 750 Query: 773 IHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + +K ++ NV+++ K+A N + +VD + L+++ D ++ K+ SG+++ Sbjct: 751 LKSKLASGSEDEILNNVKEIKGVKLAVAN-----LKDVDGEALRNLGDKIKNKLGSGVVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L G E K + + ++D++ + + + R AK+ GGGGGGRP MAQ+GG K Sbjct: 806 L-GSEVEGKVQFIAMASKDVVSKGVHCGTIVREIAKI-AGGGGGGRPDMAQAGGRLPEKL 863 Query: 886 DQAIAGVASFLK 897 A+ V + ++ Sbjct: 864 KDAMNAVENIME 875 >gi|184153174|ref|YP_001841515.1| alanyl-tRNA synthase [Lactobacillus reuteri JCM 1112] gi|183224518|dbj|BAG25035.1| alanyl-tRNA synthase [Lactobacillus reuteri JCM 1112] Length = 885 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 337/929 (36%), Positives = 518/929 (55%), Gaps = 85/929 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R +L+FF+++GH+++PS+SL+P NDPTL++ NSG+ K F G+ P +T Sbjct: 9 NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 68 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LLT + F Sbjct: 69 SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 124 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A+ W+++ G++ D +I DNFW + + GP GP +EIF+D+G Sbjct: 125 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 180 Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + P PG E ERY+EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 181 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 238 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290 ++ + N++ DLF LI+ +E+ +G K G N + ++I DH+R+ +F I DG Sbjct: 239 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ I Sbjct: 299 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + SE++RF TL+ GL LL+ V++ K ++G AFKLYDT+G P+++ ++ Sbjct: 359 IESEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 418 Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F A+ EQ++RAR A + G G +W S KE ++++GY Sbjct: 419 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGY------- 467 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526 DLT + ++ + G+ +EA G K +E++FD TPFYAE GG Sbjct: 468 --------------TDLTVDNAKVI-GLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGG 512 Query: 527 QLGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTID 576 Q+ DTG I + G ++ ++ DVQ HA ++ + R E++ L +D Sbjct: 513 QVADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELTAPIKKGARYKLVVD 563 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 ++ NH+ATHLL AL +LG H Q GS + LRFD H +T+ +LK +E Sbjct: 564 RIRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVE 623 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + VN+ I + +PV T + + A GA AL KY D+VRVV + G ++ CGG Sbjct: 624 NMVNEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGG 678 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 HV +T E+ L IVSE + AG+RRIEA+T A L +D+ L A+ LKV+Q Sbjct: 679 DHVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKE 738 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELK 810 V +VE + E ++ Q + + ++ + + + S I +EV +L+ Sbjct: 739 VPHQVETLQNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLR 798 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 + DA + K S +++L S + KA++L+ V++D A DL + A + GGGG Sbjct: 799 QLADAWRSKALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAI-NGGGG 856 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GRP++AQ+GG N +A++ +L K Sbjct: 857 GRPNLAQAGGKNPAGIKEALSQAKGYLDK 885 >gi|170078279|ref|YP_001734917.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002] gi|205830236|sp|B1XP68|SYA_SYNP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169885948|gb|ACA99661.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7002] Length = 877 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 343/906 (37%), Positives = 507/906 (55%), Gaps = 72/906 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ FLEFF + H +LPS+SL+P DPT++ T +GM+PFK IF GQ+ TT Sbjct: 11 SEIRSKFLEFFNQRQHPILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQDAPSPRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI AW+L T+ F LD + Sbjct: 70 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWAWELSTEVFQLDPKN 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 + ++V+ ED+EAF++W+ G++ +IIR+ DNFW TGPCGPCSE+++D + Sbjct: 126 IVVSVFREDDEAFEIWRDKVGVNPKRIIRMGEEDNFWKSGPTGPCGPCSELYYDFKPEL- 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ NNY Sbjct: 185 GDDNIDLEDDTRFIEYYNLVFMQYNRDAEGHLTPLQNKNIDTGMGLERMAQILQQVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + + G+ YE + V+ +VI DH+RS +IADGI +N RGYVL Sbjct: 245 ETDLIFPIIETAAKAAGIHYEKADEKTKVSLKVIGDHVRSVVHMIADGITASNTDRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + +AYP + + I++ L E+ F KT Sbjct: 305 RRLIRRVVRHGRLIGIDGNFINQVAETAIQLSEAAYPNTRERESFIKQELEREENNFLKT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL +++ +++ ++G AF L+DT G P ++ Q+I GL +D + Sbjct: 365 LERGEKLLADIIAK--EEKQISGVDAFTLFDTFGFPFELTQEIAEENGLT-VDAEGYQAE 421 Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +++Q+ R++A ++ L T + L E T F+GY Sbjct: 422 MKKQQERSKAAHETIDL---TVQGSLDELAEHIHPTAFLGY------------------- 459 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 DL + V ++A++ G VE A +G V+++ +QTPFYAE+GGQ+GD G GD + Sbjct: 460 --TDLQSQVK--IEAVLVDGHRVETAEAGVVVQLICNQTPFYAESGGQIGDRGYFSGDQL 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DVQK++ G FVHH VERG L ++ TID RR+ NH+ATHLL AL Sbjct: 516 VVRINDVQKES-GFFVHHGKVERGSLTVGDTVNATIDRACRRRAQANHTATHLLQAALKN 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T+AEL IE +N IA+ +M +A Sbjct: 575 IVDDSISQAGSLVDFDRLRFDFNCPRALTAAELTQIEAQINTWIAEAHEGQVAVMPIAEA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY + VRVV GV S LCGGTHV +T EI L I+SE+ I +G Sbjct: 635 KAKGAVAMFGEKYGEEVRVVDFP----GV-SMELCGGTHVKNTAEIGLFKIISETGISSG 689 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+ G +L +D+ +K L K + RVE I E R Q K K Sbjct: 690 IRRIEAVAGPAVLEYLKVRDQVVKDLGDKFKAKPEEITERVENIQAELRNTQKELEKVKA 749 Query: 780 QLNV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + E L + + + + ++D+K L++ + LQ+K+ ++L ++ Sbjct: 750 ELAIAKSEALVSQAETVGEFQILVENMGDLDAKALQTAAERLQQKLGEAAVVLGSTPEDG 809 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG-----------RPHMAQSGGPNGN 883 K S++ +E + KV G GG RP++AQ+GG + + Sbjct: 810 KVSLVAAFSEGIYK----------GKKVQAGKFIGGIAKLCGGGGGGRPNLAQAGGRDAS 859 Query: 884 KADQAI 889 K +A+ Sbjct: 860 KLPEAL 865 >gi|255690436|ref|ZP_05414111.1| alanine--tRNA ligase [Bacteroides finegoldii DSM 17565] gi|260623884|gb|EEX46755.1| alanine--tRNA ligase [Bacteroides finegoldii DSM 17565] Length = 872 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 344/923 (37%), Positives = 508/923 (55%), Gaps = 88/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADSSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++ +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSDTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIENMGEAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD + GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++I FN+ +++Q+ RAR ++ + +G W +LKE G T+F+GY Sbjct: 418 LILRENGMI-VNIEEFNEEMQQQKQRAR-NAAAIETGD----WITLKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYEASILRYRQIRQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG HV Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDSALREVLGEHVEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY DRVRV+ S CGGTHV Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGDRVRVIQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758 ++TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F + Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTLNDLKALFNNTPDLGIAI 730 Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 R +++ E++ K + K +L N+++++ K+ + + + +EV +K Sbjct: 731 RKYIDENAGLKKQVEDFMKEKEAALKERLLKNIQEVNGVKV--IKLCAPLPAEV----VK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G + K + ++++++L+ A +L + +AK++ GGGG Sbjct: 785 NIAFQLRGEITENLFFVAGSTDNGKPMLTVMLSDNLVATGLKAGNLVKEAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + A+ V Sbjct: 844 GQPHFATAGGKNADGLPAAVEKV 866 >gi|227544204|ref|ZP_03974253.1| alanine--tRNA ligase [Lactobacillus reuteri CF48-3A] gi|300908199|ref|ZP_07125665.1| alanine--tRNA ligase [Lactobacillus reuteri SD2112] gi|227185840|gb|EEI65911.1| alanine--tRNA ligase [Lactobacillus reuteri CF48-3A] gi|300894626|gb|EFK87982.1| alanine--tRNA ligase [Lactobacillus reuteri SD2112] Length = 895 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 337/929 (36%), Positives = 518/929 (55%), Gaps = 85/929 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R +L+FF+++GH+++PS+SL+P NDPTL++ NSG+ K F G+ P +T Sbjct: 19 NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 78 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LLT + F Sbjct: 79 SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 134 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A+ W+++ G++ D +I DNFW + + GP GP +EIF+D+G Sbjct: 135 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 190 Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + P PG E ERY+EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 191 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 248 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290 ++ + N++ DLF LI+ +E+ +G K G N + ++I DH+R+ +F I DG Sbjct: 249 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 308 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ I Sbjct: 309 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 368 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + SE++RF TL+ GL LL+ V++ K ++G AFKLYDT+G P+++ ++ Sbjct: 369 IESEEDRFSATLNGGLNLLNNVIAEAKESKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 428 Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F A+ EQ++RAR A + G G +W S KE ++++GY Sbjct: 429 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGY------- 477 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526 DLT + ++ + G+ +EA G K +E++FD TPFYAE GG Sbjct: 478 --------------TDLTVDNAKVI-GLAHDGQQADEARPGDKNIELIFDVTPFYAEMGG 522 Query: 527 QLGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTID 576 Q+ DTG I + G ++ ++ DVQ HA ++ + R E++ L +D Sbjct: 523 QVADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELTAPIKKGARYKLVVD 573 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 ++ NH+ATHLL AL +LG H Q GS + LRFD H +T+ +LK +E Sbjct: 574 RIRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVE 633 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + VN+ I + +PV T + + A GA AL KY D+VRVV + G ++ CGG Sbjct: 634 NMVNEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGG 688 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 HV +T E+ L IVSE + AG+RRIEA+T A L +D+ L A+ LKV+Q Sbjct: 689 DHVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKE 748 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELK 810 V +VE + E ++ Q + + ++ + + + S I +EV +L+ Sbjct: 749 VPHQVETLQNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLR 808 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 + DA + K S +++L S + KA++L+ V++D A DL + A + GGGG Sbjct: 809 QLADAWRSKALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAI-NGGGG 866 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GRP++AQ+GG N +A++ +L K Sbjct: 867 GRPNLAQAGGKNPAGIKEALSQAKGYLDK 895 >gi|72162469|ref|YP_290126.1| alanyl-tRNA synthetase [Thermobifida fusca YX] gi|83305862|sp|Q47N66|SYA_THEFY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71916201|gb|AAZ56103.1| alanyl-tRNA synthetase [Thermobifida fusca YX] Length = 889 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 356/920 (38%), Positives = 516/920 (56%), Gaps = 79/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I FL FF+KNGH ++PS+SLI DPTL+ N+GMVPFK F GQ P Y T+V Sbjct: 4 AEIARRFLAFFEKNGHTVVPSASLI-AEDPTLLLVNAGMVPFKPYFLGQRTPPYPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D+D VG+T RH +FF+MLGNFSFG YFKE+AI LAW+LLT F Sbjct: 63 QKCVRT----IDIDEVGKTTRHASFFQMLGNFSFGDYFKEKAIPLAWELLTTSVADGGFG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D RL++TVY +D+EA +W++ GL ++I R DNFWSM GPCGPCSEI+FD+ Sbjct: 119 FDPERLWVTVYLDDDEAATIWREKVGLPEERIQRRGKADNFWSMGVPGPCGPCSEIYFDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233 G G G + +RY+E+WNLVFMQFE+ K++ IL P +IDTGMGLERM Sbjct: 179 GPEY-GAEGGPVADEDRYLEVWNLVFMQFERGEGSGKEDYPILGELPSKNIDTGMGLERM 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ D +++ + ++TG Y N V+ RVI DH+R+++ L+ADG+ Sbjct: 238 AAILQGVDNIYETDTLGRILRRAAELTGTTYGENERADVSLRVIADHVRTATMLVADGVR 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEET 350 P NE RGYVLRRI+RR++ RLL E MH L A+ + MG YPEL I Sbjct: 298 PGNEKRGYVLRRILRRSIRNLRLLSGDESFHMHDLTAVAIDAMGDQYPELRADADKIHSI 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + +E++ F TL G L + + + + +G AF+L+DT+G P+D+ ++ Sbjct: 358 IDAEEKNFADTLRAGTTLFNRAVRRTKETGGTVFSGADAFQLHDTYGFPIDLTLEMAAEH 417 Query: 409 GLAGIDIISFNQALEEQRSRAR--AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D +F+Q ++ QR A+ A + LG+ ++ +L E G T+F+GY + Sbjct: 418 GLK-VDEETFHQLMQRQRETAKRDAQAKKLGNADI-SVYGNLLETGGPTEFLGY-----T 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 E R V I+ GE A G +VE+V D+TPFYAE+GG Sbjct: 471 DSESEAR------------------VLGIIVNGESTGAARKGDQVELVLDRTPFYAESGG 512 Query: 527 QLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G DG + + DVQK +G+FVH V G + + ++ ID R +S Sbjct: 513 QLADKGTITVDGRGVVDVEDVQKPIQGLFVHRGTVREGEVVVDDTVHAAIDTGRRASVSR 572 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHL+H AL LG Q GS P LRFD T KP+ + E+ +E+ VN+++A+ Sbjct: 573 SHSATHLIHSALRNTLGPSAGQAGSENQPGRLRFDFTSDKPLDATEIAQVEEEVNEVLAR 632 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-EYEDGGVHSSALCGGTHVSSTGE 704 N+ V ++A+ GA A+ G KY +RVRVV + EY S LCGGTHV++TG+ Sbjct: 633 NIEVQYLETTLDEALRMGALAMFGEKYGNRVRVVDMTEY------SRELCGGTHVAATGQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRA------RSHLMGQ-DEKLKSLASFLKVSQGNVV 757 + L+ ++ ESS+ +G+RR+EA+ G A S L+GQ E+LK+ L ++V Sbjct: 687 LGLVKVLGESSVGSGVRRVEALVGLDALRRVSTESALVGQLSEQLKAPREELPQRIDSLV 746 Query: 758 GRV---EEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKEL 809 R+ E+ E R Q++ A KL + D + H++ D D ++L Sbjct: 747 SRLRAAEKEIERLRAAQVLQAAGKLAESARDHGNSRVVTHRVEDGTTAD------DMRKL 800 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 + + + ++ + G+ ++ V+ + E A +L ++A+ L GGGGG Sbjct: 801 ALDVRGRLGEDRPAVVAIAGVPSDRPVVVVAINKEAQQAGLKAGELVGVAARAL-GGGGG 859 Query: 870 GRPHMAQSGGPNGNKADQAI 889 GRP +AQ GG + D A+ Sbjct: 860 GRPDIAQGGGSDVTAIDTAL 879 >gi|81428001|ref|YP_395000.1| alanyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K] gi|123564683|sp|Q38YN9|SYA_LACSS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78609642|emb|CAI54688.1| Alanyl-tRNA synthetase [Lactobacillus sakei subsp. sakei 23K] Length = 878 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 345/915 (37%), Positives = 516/915 (56%), Gaps = 67/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF++ GH++ PS+SLIP DPTL++ NSG+ K F G+ P +T Sbjct: 7 AQVRQMFLDFFKEKGHDVEPSASLIPDEDPTLLWINSGVATLKKYFDGRVVPNNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSVGDYFKEDAIPWAWEFLTSDKWIGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D++A ++W + GL+ D+II + DNFW + E GPCGP SEIF+D+G+ Sbjct: 123 EKLYVTVYPKDKDAHRIWHEKVGLAEDRIIEV--EDNFWDIGE-GPCGPDSEIFYDRGQS 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+E+WN+VF +F E P +IDTGMGLER+ + Sbjct: 180 FNNVSEDDPENYPGG--ENERYLEVWNIVFSEFNHLPNGEYVEQPHKNIDTGMGLERLVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292 V+QE N++ DLF LI+A+ ++ K G N ++ ++I DH R+ +F I DG +P Sbjct: 238 VIQEAPTNFETDLFMPLIEATAAMSDHKQYGQNAADDISFKIIADHARAVTFAIGDGAMP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 ANEGRGYVLRR++RRA+ + LG + M L+P + M S YP++++ K IE+ +R Sbjct: 298 ANEGRGYVLRRLIRRAILNGKKLGINDAFMYKLVPIVGEIMHSYYPDVLEQKDFIEKVIR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL-GKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF +TL+ GL LL+ + + ++E +NG AFKL+DT G P+++ + GL Sbjct: 358 SEEDRFRETLNDGLRLLNQTIEAVKAENETEINGADAFKLFDTFGFPIELTTEYAEDEGL 417 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F + + Q++RAR A S G+ ++ ++K K ++F GY S+ Sbjct: 418 T-VDQAGFEKEMAAQKARARNARSDEQSMGSQNEVLLNIKTK---SEFTGY-----SELE 468 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 E R ++ I++ +Q E+V+ ++VF+ TPFYAE GGQ+ Sbjct: 469 TESR--------------LADIIQDNAEQ-----ESVTTGVAQLVFEATPFYAEMGGQVA 509 Query: 530 DTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + + ++TDVQ G +H V + ++ + + L++D R + NH Sbjct: 510 DQGIIKNLAGQVVAEVTDVQYAPNGQPLHTVKVLKEMI-SGVHYTLSVDPTFRGGVVKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +LG H Q GS + PD LRFD T+ +T +L +E VND I L Sbjct: 569 TATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNLGQVTPDQLAEVEQIVNDKIWAAL 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + E A GA AL KY VRVV + G +S LCGGTH ++T ++ L Sbjct: 629 PVNTVETDIETAKQMGAIALFTEKYGKTVRVVQI-----GDYSMELCGGTHANNTSDLGL 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 I SES I AG RRIEA+T + A +L + L LAS LKV+Q ++ +++++ + Sbjct: 684 FKITSESGIGAGTRRIEAVTSKAAFKYLNDKQVLLNELASELKVAQTKDLPKKIQQLQAD 743 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK-----ELKSVMDALQKKIQ 821 + Q + + K + E V + D+K EL+ + D Q+K Sbjct: 744 LKAEQKENEQLKAKFAQEQAGNVFENVVEAGQWRLVAADAKVAGMNELRQLADQWQQKQI 803 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++L ++ +K + ++ V + + A DL + A ++ GGGGGGRP MAQ+GG N Sbjct: 804 SDVLVLATVAGDKVSLIVAVAPDAIKAGIKAGDLIKQIAPLV-GGGGGGRPDMAQAGGKN 862 Query: 882 GNKADQAIAGVASFL 896 A+A FL Sbjct: 863 PAGIPDALAAAKEFL 877 >gi|319935502|ref|ZP_08009937.1| alanyl-tRNA synthetase [Coprobacillus sp. 29_1] gi|319809533|gb|EFW05950.1| alanyl-tRNA synthetase [Coprobacillus sp. 29_1] Length = 869 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 335/913 (36%), Positives = 506/913 (55%), Gaps = 75/913 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL++F+ GH + P +SLIP NDPTL++ N+G+ K F G E+P + Sbjct: 7 NQVRQMFLDYFKSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEQPACHRIVNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEDAIPFAWEFLTSPEWIGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-E 181 +LY+TVY +D++A+++W ++ + I++ T+ NFW + E GP GP SEIF+D+G E Sbjct: 123 EKLYVTVYTDDDDAYRIWTEVCHVDPSHILK--TDGNFWEIGE-GPGGPDSEIFYDRGVE 179 Query: 182 CIPGGLPGS----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMA 234 P GL E +RYIEIWN+VF QF+ +++E LP+ +IDTGMGLER+ Sbjct: 180 YDPDGLGEKLFFEELENDRYIEIWNVVFSQFDCNPTIDRKEYKELPQKNIDTGMGLERLV 239 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +++Q N+D D F +I A+E++T ++YE N + +RVI DH+R+ +F ++DG L N Sbjct: 240 SIIQGGETNFDTDFFLPIIHATEEMTNVRYEDNKMA-YRVIADHIRTVTFALSDGALFDN 298 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GRGYVLRRI+RRA+ Y + +G M L+ + M Y L + ++ E Sbjct: 299 AGRGYVLRRILRRAVRYGKKIGIDHSFMYKLVYVVADIMKEFYDYLPAKADYVSGLVKKE 358 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E F KTL G LL+ +L D+ L+G AFKLYDT+G PL++ +I G +D Sbjct: 359 EEAFHKTLSNGEKLLNQMLKKT-IDQQLDGKDAFKLYDTYGFPLELTVEIAEETGFT-VD 416 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F ++ Q+ RAR S +++K + +D S+F+ D Sbjct: 417 EAGFKAEMKAQQVRARNARGDNESMSSQK-----------PDLMAFDT--PSQFVY-DHS 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + K +GV I QGEI + DQT FYAE GGQ DTG Sbjct: 463 PITAKVIATFIDGVK--CDEITTQGEI------------ILDQTTFYAEMGGQCADTGTM 508 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + L +T V + +H ++ G ++ L+L +D R + NH+ATHLL Sbjct: 509 SNETTLLDVTYVSRAPRLQHLHVIKIKNGSVKVGDELILKVDAHKRALIQNNHTATHLLQ 568 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL T+LG HVSQ+GS + + LRFD TH + +T E++ +ED VN+ I L V M Sbjct: 569 KALKTVLGEHVSQSGSYVDAERLRFDFTHPQKMTDEEIRKVEDQVNEQIFNGLNVQIEFM 628 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++++A+ SGA AL KY D+VRVVSV G +S LCGG HVS++ +I L I SE Sbjct: 629 SKDEAMHSGAMALFDEKYGDQVRVVSV-----GDYSKELCGGCHVSNSAQIALFKIESEE 683 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYR----- 768 S+ +GIRRIEA+T Q+A + +E +++++ K+ N +V +V + +E Sbjct: 684 SVGSGIRRIEAVTAQKAYQSMKKSEETIQTISELFKLKNRNEIVEKVTQFIDETHEVKKE 743 Query: 769 ------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 KL I AK K + N+E+++ V F+ ++ D+ K + L+ ++ + Sbjct: 744 RDQYLDKLNSIEAKEKSK-NIEEING-----VQFL-YVSESKDASIAKQMTFELRDQLTN 796 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 G+++LV E K S + +T ++ + A DL ++ +V GG GGG+P AQ G P+ Sbjct: 797 GVVVLVS-EYEGKTSYFVGLTASMVKNGYKAGDLVKMINEVT-GGRGGGKPDFAQGGCPS 854 Query: 882 GNKADQAIAGVAS 894 + AI + S Sbjct: 855 QEHINDAIKQIKS 867 >gi|288924681|ref|ZP_06418618.1| tRNA ligase [Prevotella buccae D17] gi|315607688|ref|ZP_07882682.1| alanine--tRNA ligase [Prevotella buccae ATCC 33574] gi|288338468|gb|EFC76817.1| tRNA ligase [Prevotella buccae D17] gi|315250624|gb|EFU30619.1| alanine--tRNA ligase [Prevotella buccae ATCC 33574] Length = 881 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 339/927 (36%), Positives = 512/927 (55%), Gaps = 87/927 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R ++ +FF+ GH+++ S+ ++ +DPTLMFTN+GM +K+I G + P + Sbjct: 1 MMTANEVRESYKKFFETKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPG-KD 59 Query: 61 VTTV--QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 V V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L Sbjct: 60 VRRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVL 119 Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L+ LY+TV++ D+EA + W K + AD II +DNFW M +TGPCG Sbjct: 120 HLNPEDLYVTVFEGSPEENLSRDDEAARFWGK--HVPADHIINGNKHDNFWEMGDTGPCG 177 Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PCSEI D + +PG +++ + IEIWN+VFMQ+ ++ LP IDT Sbjct: 178 PCSEIHVDSRTPEEKAQVPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDT 237 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVD 277 GMG ER+ +LQ K +NYD D+F+ +I+ E++TG+KYE N V RV+ D Sbjct: 238 GMGFERLVRMLQGKHSNYDTDIFQPIIKEIERLTGLKYEDAHGDSRTQTNIDVAMRVVAD 297 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 HLR+ +F IADG LP+N GYV+RRI+RRA+ YA L E M L+P L EMG+A Sbjct: 298 HLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNRKEAFMYKLVPVLVQEMGAA 357 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDT 393 YPEL + LI ++ E++ F +TLD+G+ LL+G + L GK E L+G AF+L+DT Sbjct: 358 YPELPAQQELIARVMKEEEDSFLRTLDKGINLLNGDMDELKAHGKTE-LDGAAAFRLFDT 416 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G PLD+ + ++C +D F++ +E+Q++RAR ++ + +G W +KE G Sbjct: 417 YGFPLDLTE-LICRENGYTVDGKGFDEEMEKQKARARNAAV-VENGD----WEVVKE--G 468 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 +F+GYD + RKV +K E+ Sbjct: 469 EQEFVGYDYTEYECHILRYRKVTQKKNTF----------------------------FEL 500 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 V D TPFY E GGQ+GDTG + +++ D K+ +H IV++ + Sbjct: 501 VLDHTPFYGEMGGQVGDTGVLVSADETVEVIDT-KRENNQSIH--IVKQLPKDIRADFMA 557 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D R + NH+ATHLL +AL +LG HV Q GS ++ D LRFD +H + +T EL+ Sbjct: 558 CVDIDKRDGSAANHTATHLLDYALKQVLGDHVEQKGSYVSADTLRFDFSHFQKVTDEELR 617 Query: 634 SIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 +E VND+I Q+ P+ R E+A A GA AL G KY D+VRVV S Sbjct: 618 QVERIVNDMIRQDFPLDEHRDTPLEEAKALGAIALFGEKYGDKVRVVRFG------PSCE 671 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 CGG H STG I I+ ESS+ AGIRRIEA+TG+ + + L + + + Sbjct: 672 FCGGIHAKSTGRIGFFKIIGESSVAAGIRRIEALTGKACEEAIYALQDTLTDVRALFNNA 731 Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI-----ISEVDSK 807 + ++ G V + EE+ ++ K + Q VE L + V M+ + + E++ Sbjct: 732 K-DLKGVVGKYIEEHDAMKKDIEKFRAQ-TVERLKDELVKRVKLMNGVQVVRAVIEMEPS 789 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLGG 865 K ++ +++ + ++ ++G +K + +++++D++ NA + R +AK++ Sbjct: 790 AAKDLVFKIREALPENLLCVIGSKAHEKPMLSVMLSDDMVKGHSLNAGQMIREAAKLI-Q 848 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+PH AQ+GG N + + A+ V Sbjct: 849 GGGGGQPHYAQAGGKNIDGLNAAVDKV 875 >gi|302866800|ref|YP_003835437.1| alanyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029] gi|302569659|gb|ADL45861.1| alanyl-tRNA synthetase [Micromonospora aurantiaca ATCC 27029] Length = 893 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 345/914 (37%), Positives = 505/914 (55%), Gaps = 80/914 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I+ FL F+ NGH ++PS+ L +DP L+F N+GMV F F GQ+ P Y T Sbjct: 2 KTAEIKRRFLAHFEANGHTVVPSAPLPAISDPNLLFINAGMVQFVPYFLGQQTPPYARAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKC+R D+D VG+T+RH TFF+M GNFSFG YFK AI LAWDL TK Sbjct: 62 SVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKSGAIPLAWDLATKPVEAGG 117 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F LD R++ TVY +D+EA+ +W+ +G+ A++I+R DNFWSM GPCGPCSE+++ Sbjct: 118 FGLDPERIWATVYLDDDEAYDIWRA-TGVPAERIVRRGKADNFWSMGIPGPCGPCSELYY 176 Query: 178 DQGECIPGGLPGSSEEGE-RYIEIWNLVFMQFEQQNK--QERFI----LPKMSIDTGMGL 230 D+G G G E E RY+E WNLVFMQFE+ +E F LP +IDTGMGL Sbjct: 177 DRGPAY--GREGGPEVDEDRYLEFWNLVFMQFERGPGVGKEDFPILGDLPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280 ERMA++LQ N Y+ID K ++ + ++TG +Y + V RVI DH+R Sbjct: 235 ERMASLLQGVDNLYEIDEVKPILDRAAELTGKRYGVHSGHAANESHPDDVRLRVIADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 +S LI DG+ P+NEGRGYVLRRIMRRA+ RLLGY + + LLP M +YPEL Sbjct: 295 TSLMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGYQDRALPELLPVARDCMAPSYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLP 397 + I + +E++ F TL G +LD ++ GK L+GD AF+L+DT+G P Sbjct: 355 AEDFGRISQYAYAEEDAFLATLRAGTTILDTAIAETKSAGK-AALSGDKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQ 456 +D+ +I +GL +D F + + +QRSRA+A + +G T+ + S+ + G + Sbjct: 414 IDLTLEIAAEQGLQ-VDAEGFRRLMADQRSRAKADAQARKTGHTDVSAYRSVLDGGGPVE 472 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 F GY ++ +E R V+A++ G V AV G +E+V D Sbjct: 473 FTGY-----TELSRESR------------------VRALLSGGAAVSAAVEGDTIELVLD 509 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 TPFYAE GGQ D G G ++++ DVQ+ G+ VH A V RG +R+ + ID Sbjct: 510 TTPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRAKVVRGEVRSGETGYAEID 569 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 RR +S +H+ATHL+H + LG +Q GS P LRFD + + L +E Sbjct: 570 VSRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLHDVE 629 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+++ +L V + ++E+A GA AL G KY +RVRVV V G ++ LCGG Sbjct: 630 QQVNEVLLADLEVHAFVTSQEEARRIGAMALFGEKYGERVRVVEV-----GDYARELCGG 684 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV+ + ++ L+ I+SE+S+ +G+RRIEA+ G A L + + LA +V V Sbjct: 685 THVARSAQLGLVKILSEASVGSGVRRIEALVGMDAFGFLAREHLLVSRLAELFRVPGEQV 744 Query: 757 VGRVEEIWEEYR----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812 RVE+ + R +L+ + A+ L + K DV ++++ +E + Sbjct: 745 ADRVEQTVTQLRDAEKELEKLRAQLVLGGAGALAAQAK--DVRGVAYVGTEAPEGAAAND 802 Query: 813 MDALQKKIQSGI------IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 + L ++I+ I ++ V KAS+++ V + R +A DL + + Sbjct: 803 VRTLAQEIRGRIDAARPAVIAVAARANGKASLVVAVNQAARGRNLSAKDLVKAAFS---- 858 Query: 866 GGGGGRPHMAQSGG 879 G GGG +AQ GG Sbjct: 859 GRGGGSDDLAQGGG 872 >gi|227513125|ref|ZP_03943174.1| alanine--tRNA ligase [Lactobacillus buchneri ATCC 11577] gi|227083700|gb|EEI19012.1| alanine--tRNA ligase [Lactobacillus buchneri ATCC 11577] Length = 887 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 346/924 (37%), Positives = 515/924 (55%), Gaps = 85/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 14 SQIRQMFLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKNPRMTSS 73 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ AI A++LLT K F D+ Sbjct: 74 QKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPKWFGWDK 129 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D +A K W+ + G+S D II I DNFW + + GP GP SEIF+D+G Sbjct: 130 DKLYMTVYPKDTDAKKYWEAV-GVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIFYDRGAD 185 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E +R++E+WN+VF QF + LP+ +IDTGMGLER+ + Sbjct: 186 FDELAPDDPENYPGG--ENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLERVVS 243 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292 + Q N++ DLF +I+ +E + K G N V R+I DH R+ + I DG LP Sbjct: 244 IFQHARTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGDGALP 303 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RRA+ + LG + L P + + S YPE+++ + IE+ +R Sbjct: 304 SNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPEVLEQREYIEKVIR 363 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE++RF +TL GL LL V++ K+EI +G AFKLYDT+G P ++ ++ G Sbjct: 364 SEEDRFNETLADGLKLLHDVIADTKAESKNEI-DGPTAFKLYDTYGFPYELTKEEASEVG 422 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L +D F + +Q+ RAR G S G + +K+ ++++GYD L Sbjct: 423 L-DVDRQGFEVEMHKQKERARNARSGAKSMGVQRDLLVKVKDD---SEYVGYDTLD---- 474 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +D K++ IV+ ++V E+ +EV+FD+TPFYAE GGQ+ Sbjct: 475 -VKDAKLI-----------------DIVENEKLVSES-KADTIEVIFDKTPFYAEMGGQV 515 Query: 529 GDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV------LTIDYQN 579 D G + GD + + DVQ G +H ++T+ SLV L +D Sbjct: 516 ADRGVILDENGDKV-ADVIDVQHAPNGQNIH-------TIKTQESLVKGQRYHLVVDKLF 567 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 ++ NH+ATHLL +L +LG H Q GS + P LRFD H +T +L+ +E V Sbjct: 568 HSRVEKNHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMV 627 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I + + V T + + + GA AL KY D+VRVVS+ G S CGGTHV Sbjct: 628 NKQIFKEIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHV 682 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 +T +I L IVSES + AGIRRIEA+T + A L Q +LK ++ LKV+Q +V Sbjct: 683 KNTRDIGLFKIVSESGVGAGIRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPT 742 Query: 759 RVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHK--IADVNFMSHIISEVDSKELKSVM 813 RVE++ +E + L+ + +L E + HK ++ II + +L+ + Sbjct: 743 RVEQLQDEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLT 802 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRP 872 D + K S +++L G +KA++++ V+++ + D A DL + A + GGGGGRP Sbjct: 803 DTWRSKGLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNI-KGGGGGRP 860 Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896 +MAQ+GG + + D+A+ +L Sbjct: 861 NMAQAGGKDPSGLDKAMKAAIEWL 884 >gi|227524340|ref|ZP_03954389.1| alanine--tRNA ligase [Lactobacillus hilgardii ATCC 8290] gi|227088571|gb|EEI23883.1| alanine--tRNA ligase [Lactobacillus hilgardii ATCC 8290] Length = 887 Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust. Identities = 346/924 (37%), Positives = 515/924 (55%), Gaps = 85/924 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL+FFQ+ GH + PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 14 SQIRQMFLDFFQEKGHAIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKNPRMTSS 73 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ AI A++LLT K F D+ Sbjct: 74 QKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAIAWAFELLTSPKWFGWDK 129 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D +A K W+ + G+S D II I DNFW + + GP GP SEIF+D+G Sbjct: 130 DKLYMTVYPKDTDAKKYWEAV-GVSPDHIIEI--EDNFWDIGQ-GPSGPDSEIFYDRGAD 185 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E +R++E+WN+VF QF + LP+ +IDTGMGLER+ + Sbjct: 186 FDELAPDDPENYPGG--ENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLERVVS 243 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292 + Q N++ DLF +I+ +E + K G N V R+I DH R+ + I DG LP Sbjct: 244 IFQHARTNFETDLFLPMIKKTEAFSDHKKYGVNKQDDVAFRIIADHARAITVAIGDGALP 303 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RRA+ + LG + L P + + S YP++++ + IE+ +R Sbjct: 304 SNVGRGYVIRRLIRRAIVNGQRLGINASFLYKLAPVVGETLKSYYPKVLEQREYIEKVIR 363 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE++RF +TL GL LL V++ K+EI +G AFKLYDT+G P ++ ++ G Sbjct: 364 SEEDRFNETLADGLKLLHDVIADTKAESKNEI-DGPTAFKLYDTYGFPYELTKEEASEVG 422 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L +D F + +Q+ RAR G S G + +KE ++++GYD L Sbjct: 423 L-DVDRQGFEVEMHKQKERARNARSGAKSMGVQRDLLVKVKED---SEYVGYDTLD---- 474 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +D K++ IV+ ++V E+ +EV+FD+TPFYAE GGQ+ Sbjct: 475 -VKDAKLI-----------------DIVENEKLVSES-KADTIEVIFDKTPFYAEMGGQV 515 Query: 529 GDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV------LTIDYQN 579 D G + GD + + DVQ G +H ++T+ SLV L +D Sbjct: 516 ADRGVILDENGDKV-ADVIDVQHAPNGQNIH-------TIKTQESLVKGQQYHLVVDKLF 567 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 ++ NH+ATHLL +L +LG H Q GS + P LRFD H +T +L+ +E V Sbjct: 568 HSRVEKNHTATHLLDQSLRNVLGGHTQQAGSLVEPGYLRFDFNHFGQVTDEDLQKVEQMV 627 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I + + V T + + + GA AL KY D+VRVVS+ G S CGGTHV Sbjct: 628 NKQIFKEIDVKTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHV 682 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 +T +I L IVSES + AGIRRIEA+T + A L Q +LK ++ LKV+Q +V Sbjct: 683 KNTRDIGLFKIVSESGVGAGIRRIEAVTSKDAFKLLNTQASELKQISDSLKVTQLKDVPT 742 Query: 759 RVEEIWEEYRKLQLIHAKRKLQL---NVEDLSCHK--IADVNFMSHIISEVDSKELKSVM 813 RVE++ +E + L+ + +L E + HK ++ II + +L+ + Sbjct: 743 RVEQLQDEIKNLKAKQDSLEAKLAGQQAESVFNHKQEAGQSTIITGIIKDAGMDQLRQLT 802 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRP 872 D + K S +++L G +KA++++ V+++ + D A DL + A + GGGGGRP Sbjct: 803 DTWRSKGLSDVLVL-GTGSGQKANLVVAVSDNKIKDGIKAGDLIKSIASNI-KGGGGGRP 860 Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896 +MAQ+GG + + D+A+ +L Sbjct: 861 NMAQAGGKDPSGLDKAMKAAIEWL 884 >gi|282896478|ref|ZP_06304498.1| Alanyl-tRNA synthetase, class IIc [Raphidiopsis brookii D9] gi|281198584|gb|EFA73465.1| Alanyl-tRNA synthetase, class IIc [Raphidiopsis brookii D9] Length = 878 Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust. Identities = 341/896 (38%), Positives = 520/896 (58%), Gaps = 53/896 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+F+ + H+ LPS+SL+P DPT++ T +GM+PFK IF GQ ++ TT QK Sbjct: 11 IRQLFLDFYTQRQHQPLPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTAEFKRATTSQK 69 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F L RL Sbjct: 70 CIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFGLPPERLV 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++V+++D+EAF +W++ G+ +I R+ +DNFW TGPCGPCSEI++D + G Sbjct: 126 VSVFEDDDEAFNIWQQQIGVPEKRIKRMGADDNFWVSGPTGPCGPCSEIYYDFHPEL-GD 184 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ NNY+ Sbjct: 185 DHIDLEDDTRFIEFYNLVFMQYNRDISGNLTPLQNKNIDTGMGLERMAQILQKVPNNYET 244 Query: 247 DLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DL +I+ + ++ + Y + N V+ +VI DH+R+ +IAD I +N GRGY+LRR Sbjct: 245 DLIFPIIETAAKIAKINYHDSDENTKVSLKVIGDHVRAVVHMIADEIRASNVGRGYILRR 304 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 ++RR + + RL+G + + + S YP L Q + +I+ L+ E+ F KTLD Sbjct: 305 LIRRVVRHGRLIGIPGEFINQVAETAISLSQSVYPHLRQRETVIKAELQREEGNFLKTLD 364 Query: 364 RGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 RG LL ++ + + +++G+ AF LYDT+G PL++ Q+I + L+ +D+ FN Sbjct: 365 RGEKLLGEIIQEVKQQGLTVISGESAFTLYDTYGFPLELTQEIAQEQSLS-VDVEGFNTE 423 Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +Q RA+A ++ L T + L E +T+FIGY L Sbjct: 424 MHKQIERAKAAHETIDL---TVQGSLDKLAEHIHSTEFIGYRQL---------------- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 ++ + ++ +G A G V++V D+TPFYAE+GGQ+GD G GDG+ Sbjct: 465 -------ATTAKIAVLLVEGIAQATATGGTNVQIVLDKTPFYAESGGQIGDQGYISGDGL 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV+K+++ F+H +ERG ++ S+ +D NRR+ NH+ATHLL AL Sbjct: 518 LIRIEDVKKESD-FFIHFGKIERGTVKVGDSVTAQVDTGNRRRAQANHTATHLLQAALKK 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS ++ D LRFD S+ +T E++ +ED VN I+Q P I+ +A Sbjct: 577 IVDEGISQAGSLVSFDRLRFDFNCSRSLTEDEVQQVEDLVNAWISQAHPAQVEILPLPEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY D VRV+ GV S LCGGTHV++TGEI + I+S+ + AG Sbjct: 637 KARGAVAMFGEKYGDHVRVIDFP----GV-SMELCGGTHVNNTGEIGVFKIISQVGVSAG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA++G +L +D+ +K L++ KV + R+ + E R + + K Sbjct: 692 IRRIEAVSGAAVLDYLNIRDQVVKDLSNRFKVKPEEIPDRITILQTELRHNEKVIQNLKS 751 Query: 780 QLN-VEDLSCHKIADVNFMSHII----SEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 QL V+ S + A V II +++D + LK + L +KI +G ++L I + Sbjct: 752 QLAIVKSDSLLQTAQVVGEHKIIVAQMTDIDPESLKDAAERLLQKIVNGAVVLASIPEPG 811 Query: 835 KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K S++ + + ++ A AK L GGGGGG+P++AQ+GG + +K QA+ Sbjct: 812 KVSIVAAFSSHVNEKGLQAGKFVGNIAK-LCGGGGGGKPNLAQAGGRDASKLPQAL 866 >gi|325268831|ref|ZP_08135456.1| alanine--tRNA ligase [Prevotella multiformis DSM 16608] gi|324988803|gb|EGC20761.1| alanine--tRNA ligase [Prevotella multiformis DSM 16608] Length = 888 Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust. Identities = 341/941 (36%), Positives = 512/941 (54%), Gaps = 100/941 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD + LY+TV++ DE EA W+K + I+ +DNFW M +TGPCG Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEAAGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178 Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PCSEI D + E +PG +++ + IEIWN+VFMQF ++ L IDT Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVN 271 GMG ER+ ++Q K +NYD D+F +I E+++G KY EG N + Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYSHTFPEGPNGEGVNEEQKVDIA 298 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG E M LL L Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVA 387 EMG+AYPEL + LI ++ E++ F +TLD+G+ LL+G + L G+ E L+G A Sbjct: 359 REMGAAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHGRKE-LDGKEA 417 Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447 F+L+DT+G PLD+ + ++C +D FN+ + +Q++RAR ++ + +G W Sbjct: 418 FRLFDTYGFPLDLTE-LICGENGYTVDEKQFNEEMAKQKARARNAAV-VENGD----WEV 471 Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507 L+E G +F+GYD + RKV +K Sbjct: 472 LRE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF------------------------- 504 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 E+V D TPFY E GGQ+GD G + + + + D K+ +H IV++ Sbjct: 505 ---YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDT-KRENNQSIH--IVKQLPKNV 558 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 E + +D + R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + I Sbjct: 559 EADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKI 618 Query: 628 TSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 T EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 619 TDEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFG---- 674 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 S CGG H +STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L Sbjct: 675 --PSCEFCGGIHAASTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLK 732 Query: 747 SFLKVSQG--NVVGR-VEEI------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM 797 + ++ V+ R VEE E++R + A + L VE + D + Sbjct: 733 AMFNNAKDLKAVLTRFVEENDAMKREVEKFRAQAVDRAAKTLAERVE------MVDGVHV 786 Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDL 855 + VD K ++ +++ + ++ ++G E + + I++++D++ NA + Sbjct: 787 IKAVLPVDPASAKDIVFKVRQSLPEKLVCILGSVYEDRPQLSIMLSDDMVKEHGLNAGKI 846 Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 R +AK++ GGGGG+PH AQ+GG + + A+ V + Sbjct: 847 IREAAKLI-KGGGGGQPHYAQAGGKDADGVSAAVDKVMELI 886 >gi|116493011|ref|YP_804746.1| alanyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745] gi|122265525|sp|Q03ER8|SYA_PEDPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116103161|gb|ABJ68304.1| alanyl-tRNA synthetase [Pediococcus pentosaceus ATCC 25745] Length = 881 Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust. Identities = 340/923 (36%), Positives = 517/923 (56%), Gaps = 82/923 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF+ GH + PS+SL+P +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SEIRRMYLDFFKSKGHIIEPSASLVPQDDPTLLWINSGVATMKKYFDGSVVPEVPRLTSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHT FEMLGNFS G YFKE AI AW+LLT + + +D Sbjct: 67 QKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKEEAIHWAWELLTSKEWYGMDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +DEEA K+W + + + I+++ DNFW + E GP GP SEIF+D+GE Sbjct: 123 EKLYVTVYPKDEEAKKIWLE-TPIDPSHIVKV--EDNFWDIGE-GPSGPDSEIFYDRGEA 178 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ER++EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 179 FNNLEDDDPENYPGG--ENERWLEIWNIVFSQFNHKPDGTYEPLPHKNIDTGMGLERVVS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293 V Q+ N++ DLF +I E+++G KY N + ++ +VI DH R+ +F I DG +P+ Sbjct: 237 VFQDAPTNFETDLFLPIIHEVEKLSGKKYGENKESDISFKVIADHARAITFAIGDGAIPS 296 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV+RR++RRA+ + + LG E + ++P + M YPE++ + I + ++S Sbjct: 297 NEGRGYVIRRLLRRAVMHGKQLGVNETFLYKMVPVVGEIMKDYYPEVLADQDYIAKVIKS 356 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E++RF +TL GL LL+ ++ G D I D AF+L+DT+G PL++ ++ +GL Sbjct: 357 EEDRFSETLTDGLELLNTIIDETKTKGSDTISGFD-AFRLFDTYGFPLELAKEYASDKGL 415 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F +++Q+ RAR A S G + LK + ++++GYD LR Sbjct: 416 K-VDEAGFEDEMQKQKERARSARSTEKSMGVQSDLLTDLKTE---SKYVGYDTLR----- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +D ++I++ ++Q G++ + G+ V+F+ TPFYAE GGQ+ Sbjct: 467 ------------VD-----NAILENVIQDGKLTDIVEPGE-ARVLFNITPFYAEMGGQVA 508 Query: 530 DTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G I D I ++ DVQ G + H I + + + L ++ ++ N Sbjct: 509 DQG-EIRDANGEIVAEVIDVQHAPNGQNL-HTIKALKKMHSGAAYTLEVNRAFHLKVEKN 566 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLL AL ILG H Q GS + P LRFD TH +T+ +L +E +N+ I Sbjct: 567 HTATHLLDQALRDILGDHTQQAGSLVEPGYLRFDFTHFGQVTNEDLDRVEKIINEKIYDE 626 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +PV T + E GA AL KY +VRVV + G +S CGGTHV +T EI Sbjct: 627 IPVTTVETDLETGKKMGAIALFNDKYGKKVRVVGI-----GDYSKEFCGGTHVKNTNEIG 681 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765 L IVSES + AG+RRIEA+T Q A L ++ LK A LK +Q +V + E++ Sbjct: 682 LFKIVSESGVGAGVRRIEAVTSQAALEFLNTEENLLKQTAGLLKSAQLKDVPTKTEQLQS 741 Query: 766 EYR----KLQLIHAK--RKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDAL 816 + K+ + AK + N+ D ++ ++N + I ++V +L+ + D Sbjct: 742 NVKALTQKISQLEAKIAKSQAANIGD----EMVEINGVRLIAADVQVSGMDQLRQMADDW 797 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHM 874 + K QS +++L E KA+++ V +D + + A DL + ++ KV GGGGGRP+M Sbjct: 798 KNKDQSDVLVLAAKIGE-KANLIAAVKDDFVKKGLKAGDLIKAIAPKV--NGGGGGRPNM 854 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 AQ+GG N + A+ +L+ Sbjct: 855 AQAGGSNPDNIKAALQAAREWLE 877 >gi|327314000|ref|YP_004329437.1| alanine--tRNA ligase [Prevotella denticola F0289] gi|326944684|gb|AEA20569.1| alanine--tRNA ligase [Prevotella denticola F0289] Length = 888 Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust. Identities = 340/940 (36%), Positives = 510/940 (54%), Gaps = 98/940 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD + LY+TV++ DE EA W+K + I+ +DNFW M +TGPCG Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEASGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178 Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PCSEI D + E +PG +++ + IEIWN+VFMQF ++ L IDT Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVN 271 GMG ER+ ++Q K +NYD D+F +I E+++G KY EG N + Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYNHTFPEGPNGEGVNEEQKVDIA 298 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG E M LL L Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAF 388 EMG+AYPEL + LI ++ E++ F +TLD+G+ LL+G + L E L+G AF Sbjct: 359 HEMGTAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHEKKELDGKEAF 418 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 +L+DT+G PLD+ + ++C +D FN+ + +Q++RAR ++ + +G W L Sbjct: 419 RLFDTYGFPLDLTE-LICGENGYTVDEKQFNEEMAQQKARARNAAV-VENGD----WEVL 472 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 +E G +F+GYD + RKV +K Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 E+V D TPFY E GGQ+GD G + + + + D K+ +H IV++ E Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDT-KRENNQSIH--IVKQLPKNVE 559 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + +D + R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + IT Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619 Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687 EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFG----- 674 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 S CGG H +STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L + Sbjct: 675 -PSCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733 Query: 748 FLKVSQG--NVVGR-VEEI------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798 ++ V+ R VEE E++R + A + L VE + D + Sbjct: 734 MFNNAKDLKAVLTRFVEENDAMKREVEKFRTQAVDRAAKTLAERVE------MVDGVHVI 787 Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLA 856 + VD K ++ +++ + ++ ++G E + + I++++D++ NA + Sbjct: 788 KAVLPVDPASAKDIVFKVRQSLPEKLVCILGSVYEDRPQLSIMLSDDMVKEHGLNAGKII 847 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 R +AK++ GGGGG+PH AQ+GG + + A+ V + Sbjct: 848 REAAKLI-KGGGGGQPHYAQAGGKDADGVSAAVDKVMELI 886 >gi|289643307|ref|ZP_06475431.1| alanyl-tRNA synthetase [Frankia symbiont of Datisca glomerata] gi|289506881|gb|EFD27856.1| alanyl-tRNA synthetase [Frankia symbiont of Datisca glomerata] Length = 894 Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust. Identities = 314/821 (38%), Positives = 458/821 (55%), Gaps = 67/821 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I + +L +F GH ++PS+SLI +DPTL+ N+GMVPFK F G+ P Y +V Sbjct: 4 AEIASRWLRYFADRGHTVVPSASLI-ADDPTLLLVNAGMVPFKPYFLGEVAPPYSRAASV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VGRT RH +FF+M GNFSFG YFKE I LAW+LLT + Sbjct: 63 QKCVRT----TDIEEVGRTTRHGSFFQMCGNFSFGDYFKETVIPLAWELLTTPVADGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L + RL++TVY +D+EA +W G+ D+I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LAEDRLWVTVYLDDDEAADIWHSKIGVPTDRIQRLGMEDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMGLERM 233 G G G + GERY+EIWNLVFMQ+ E +K++ IL P +IDTG+GLER+ Sbjct: 179 GPEF-GAEGGPAVNGERYLEIWNLVFMQYIRGEGSSKKDYPILGDLPSRNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 AT+LQ N Y+ID + ++ + +TG +Y E + V+ RV+ DH+R+S LI DG+L Sbjct: 238 ATILQGVDNLYEIDTSRVILDRTSALTGARYGAEHRSDVSLRVVADHVRTSVMLIGDGVL 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRR+MRRA+ RLLG + M ++ A MG YPEL+ ++ I+ Sbjct: 298 PGNEGRGYVLRRMMRRAIRNMRLLGAHDATMHEMVEATIEAMGPQYPELVTDRVRIDSVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G + D S K ++ G+ F+L+DT+G P+D+ ++ G Sbjct: 358 TAEEAAFLQTLRTGTSIFDLAASETKKAGGSVIPGERVFQLHDTYGFPVDLTLEMAAETG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L +D F + + EQR RA+A + +G + + + G + F GYD Sbjct: 418 LT-VDEEGFRRLMTEQRQRAKADARAKKTGHVDTSAYRDVLAAAGPSAFTGYD------- 469 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + + V+ ++ G EA G VE+V D+TPFYAE GGQL Sbjct: 470 ----------------SGAEEARVRGLLVGGAAAREAAQGDDVEIVLDRTPFYAEGGGQL 513 Query: 529 GDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + DG ++I DVQK + VH V G + + ID R +S +H Sbjct: 514 ADAGVIRLADGTEIEILDVQKPLPELIVHRGRVRTGEVTLGADVQAEIDPARRAAISRSH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS +P RFD + + + + L +E+ +N ++ ++L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFSAAAAVPPSVLADVEETINQVLTEDL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ + A +GA A+ G KY+DRVRVVS+ G +S LCGGTHV +G++ L Sbjct: 634 DVHAEVMDIDQARRTGAIAMFGEKYSDRVRVVSI-----GDYSRELCGGTHVRRSGQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-------VVGRV 760 + ++ E+S+ AG+RR+EA+ G A +L + + + LK + + V+GR+ Sbjct: 689 VKLLGEASVGAGVRRVEALVGLDAYRYLAREAVLVSQITDVLKAPRADVPERLSQVLGRL 748 Query: 761 EEIWEEYRKL---QLIHAKRKLQLNVED-----LSCHKIAD 793 E +E KL Q++ L ED L H+ AD Sbjct: 749 REAEKELEKLRAAQVLAIAGDLARAAEDVGGTALVTHRAAD 789 >gi|226328743|ref|ZP_03804261.1| hypothetical protein PROPEN_02643 [Proteus penneri ATCC 35198] gi|225201929|gb|EEG84283.1| hypothetical protein PROPEN_02643 [Proteus penneri ATCC 35198] Length = 589 Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust. Identities = 292/615 (47%), Positives = 390/615 (63%), Gaps = 44/615 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++PSSSL+P NDPTL+FTN+GM FK++F G + Y T Sbjct: 4 STAEIRQAFLDFFHTKGHQIVPSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDNRPYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TAQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEEWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY D+EA+ +W K G+ A++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYATDDEAYDIWNKEIGIPAERIIRIGDNKGAPFASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMDPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + VLQ +NYDIDLF+ LI++ QVT N + RVI DH+RS SFL+ DG++P Sbjct: 244 ITAVLQHVNSNYDIDLFRSLIKSVAQVTNATDLENKSL--RVIADHIRSCSFLVCDGVIP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRRI+RRA+ + +LG + L+ L M A EL + + ++E+ L+ Sbjct: 302 SNEGRGYVLRRIIRRAVRHGYMLGAKDTFFYKLVAPLIEVMAEAGEELKRQQAIVEKVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L++L D+IL G+ AF+LYDT+G PLD+ D+ R + Sbjct: 362 TEEEQFARTLERGLQLLDEELANL-TDDILPGETAFRLYDTYGFPLDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F+ A+EEQR RAR S G GT + SL + ++F GYD D Sbjct: 420 VDENGFDVAMEEQRKRARESS---GFGTD---YNSLIKVDSRSEFSGYD---------HD 464 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + + AI G+ V E +G++ + ++T FYAE+GGQ+GD G Sbjct: 465 EQ--------------QGTITAIFHNGQSVTELKAGEEGIIFLNKTAFYAESGGQVGDKG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G ++TD QK + I H V G + TID R + +NHSATHL Sbjct: 511 VLTGKDSLFEVTDTQKYGKAI-GHIGKVNVGSFIVNHKINATIDIARRDAIRLNHSATHL 569 Query: 593 LHHALSTILGSHVSQ 607 LH AL +LG+HV+Q Sbjct: 570 LHAALRQVLGTHVTQ 584 >gi|293374254|ref|ZP_06620582.1| alanine--tRNA ligase [Turicibacter sanguinis PC909] gi|292647087|gb|EFF65069.1| alanine--tRNA ligase [Turicibacter sanguinis PC909] Length = 873 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 344/915 (37%), Positives = 520/915 (56%), Gaps = 73/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ +L FF+ GH + P + L+P NDP+L++ NSG+ K F G+E P +T Sbjct: 7 SEIRSMYLNFFKSKGHMIEPGAPLVPINDPSLLWINSGVAALKKYFDGREIPNNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YF+E A+ W+LLT + F D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAVTWGWELLTSKEWFGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 LY+TVY D+E + LW K+ G+S D I+++ N FW + E GPCGP +EIF+D+G Sbjct: 123 ELLYVTVYPTDQETYDLWIKL-GVSPDHIVKLEYN--FWEIGE-GPCGPNTEIFYDRGTK 178 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMA 234 E I L E +RYIEIWN+VF Q+ + ++ E +LP +IDTGMGLERMA Sbjct: 179 YDPENIGIRLLEEDIENDRYIEIWNIVFSQYNSKEGLDRSEYPMLPNKNIDTGMGLERMA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 V+Q N+D DLF +I+A+E+++G+KY +VI DH+R+ +F +ADG L +N Sbjct: 239 CVIQGVETNFDTDLFMPIIRATEEMSGVKYTQETATAFKVIADHVRTVTFAVADGALLSN 298 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ Y + LG M L+P + M YP + L+++ ++SE Sbjct: 299 EGRGYVLRRLLRRAVRYGKKLGIDRAFMYELVPVVADIMKDYYPYVCDKIELVQKVIKSE 358 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 ++RF +TL G +L +++ +D+ ++G AF LYDT+G P ++ + G +D Sbjct: 359 EDRFRQTLADGEKILTDLIAKC-EDKTISGKDAFMLYDTYGFPYELTLEYAEEAGFT-VD 416 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F+ +E QR RAR + S ++ +L ++F+GY L Sbjct: 417 KEGFDAQMEVQRERARNAREDVESMHSQNA--ALMSFKTPSKFVGYHQL----------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +S V ++Q GE+V+ +GQ V+ D TPFYAE+GGQ+ DTG Sbjct: 464 ------------STTSNVILLLQNGEVVDSLTGAGQ---VILDTTPFYAESGGQVADTGM 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + +TDV K G +H V+ G L +V + +NR L+ NH+ATHLL Sbjct: 509 MTTSAANVMVTDVIKAPNGQHLHSVQVD-GTLSLNDEVVCQVQVENRLDLTKNHTATHLL 567 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+H +Q GS ++ D LRFD T+ + +TS EL+ IE VN+ I ++PV Sbjct: 568 HQALKDVIGAHANQAGSLVSADRLRFDFTNMQGLTSEELQRIEAIVNEKIWASIPVEVFE 627 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA AL KY + VRVV G +S LCGG HVS+T EI L I+SE Sbjct: 628 KSIEEAKQMGAMALFSEKYGETVRVVK-----AGDYSIELCGGCHVSNTSEIGLFKIISE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----- 768 S I AG RRIEA+TG+ A ++ E+ +++ LK + RVE I +E + Sbjct: 683 SGIGAGTRRIEAVTGKGAYQYMNSFIERFAAVSETLKTKPALLEERVEGILDELKEAHRE 742 Query: 769 ----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K +L H K K +N + ++A + ++ + +VD L+ ++D ++++ S + Sbjct: 743 NDSLKSKLSHLKMKEIVN----NTREVAGITVLTANLVDVDMNHLRQMVDEFKQQLSSAV 798 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNG 882 I+L + + K ++ VT D + + V ++ +V + GGGGGGRP MAQ+G + Sbjct: 799 IVLAS-AVDGKVAISCGVTPDYVKQ--GVHAGKIVKEVATICGGGGGGRPDMAQAGAKDA 855 Query: 883 NKADQAIAGVASFLK 897 K ++A+ V +LK Sbjct: 856 TKIEEALKNVDEWLK 870 >gi|254519282|ref|ZP_05131338.1| alanyl-tRNA synthetase [Clostridium sp. 7_2_43FAA] gi|226913031|gb|EEH98232.1| alanyl-tRNA synthetase [Clostridium sp. 7_2_43FAA] Length = 879 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 335/907 (36%), Positives = 529/907 (58%), Gaps = 68/907 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FF+ H L S L+P ND +L+ N+GM P K FTG ++P + +TT Sbjct: 7 NELREAYLKFFESKDHLRLESFPLVPKNDKSLLLINAGMAPLKPYFTGLQEPPRKRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFKE I AW+ +T+ + + + Sbjct: 67 QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKEEIIPWAWEFITETLQIPKDK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+T+Y ED+EA+ +W K + + +I R+ +DNFW + GPCGPC+EI +D+GE Sbjct: 123 LYVTIYLEDDEAYDIWCKKTDVDPKRIFRLGKDDNFWEIG-VGPCGPCTEIHYDRGEGAI 181 Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + + S E+ R +E WNLVF QF++ + L +IDTGMGLER+AT++Q Sbjct: 182 TNVEDFVKASDED--RVVEFWNLVFTQFDKDEEGNYNRLANPNIDTGMGLERIATIMQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID K+++Q +++G+KY + + ++ R+I DH++S + LI+DG+ P+NEGRG Sbjct: 240 DNIFEIDTVKNILQKVSELSGVKYGEDKLKDISLRIITDHVKSVTMLISDGVQPSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + ++ ++ AYP LI++K IE + E+ERF Sbjct: 300 YVLRRLLRRAARHGRLLGIKGLFLTDIVESVVENYSGAYPMLIESKEYIERIVSLEEERF 359 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D G+ +L+ + + ++ L G+ AFKLYDT+G P+++ ++IL +G+ +D Sbjct: 360 NETIDSGMNILNDYIEEMEASNEKTLKGEKAFKLYDTYGFPIELTEEILEEKGM-NVDYE 418 Query: 417 SFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +F + ++EQR RAR+ +G KI S+ T+FIGYD + Sbjct: 419 AFRKEMDEQRQRARSARGESSYMGSDENPINKIDASIN-----TEFIGYDNIE------- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V+S + + V+E G+K +V D+TPFYAE GGQ+GD Sbjct: 467 ----------------VNSKILVLANDNNFVDELSKGEKGYIVTDKTPFYAEMGGQVGDK 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + D +K G +H+ V G ++ L ID R ++ NH+ATH Sbjct: 511 GIIKTASGEAYVYDTKKNVGGKTIHYVKVVEGTIKINEEANLKIDVLRRNNIAKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH AL ++G HV+Q GS + + LRFD H + +T E++ IE+ VN I + V T Sbjct: 571 MLHEALKQVVGKHVNQAGSYVDDERLRFDFAHFQGLTEEEIEKIEELVNKKIMEVFNVDT 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M ++A SGA AL KY D+VRVVSV G S LCGGTHV+++GEI L I+ Sbjct: 631 NLMTLDEAKESGAMALFDDKYGDKVRVVSV-----GEFSKELCGGTHVNNSGEIGLFKII 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEY 767 +E+ + AGIRRIEA++G A ++ + LK S LK S+ +V+ ++ EI E+ Sbjct: 686 NEAGVAAGIRRIEAVSGLNAIKYMEEKQRLLKEACSALKCSEKDVLKKIASQGAEIKEKE 745 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGI 824 +++ + K KL VED + +VN +++ + +D L+ + D ++ K+ SG+ Sbjct: 746 KEISEL--KSKLTCGVEDDILSSVKEVNGIKVVAYGLEGIDGNALRDLGDKMRSKLSSGV 803 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNG 882 ++L+ + K +V+ + T+D+L++ ++ ++ + GGGGGGRP MAQ+GG N Sbjct: 804 VVLLS-NVGGKVNVVSMATKDVLEK--GINCGKIIKEVAAVVGGGGGGRPDMAQAGGKNP 860 Query: 883 NKADQAI 889 AI Sbjct: 861 ENIKSAI 867 >gi|34556759|ref|NP_906574.1| alanyl-tRNA synthetase [Wolinella succinogenes DSM 1740] gi|44888324|sp|Q7MAD3|SYA_WOLSU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|34482473|emb|CAE09474.1| ALANYL-TRNA SYNTHETASE [Wolinella succinogenes] Length = 855 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 342/897 (38%), Positives = 516/897 (57%), Gaps = 58/897 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL++F GH + S L+P +DPTL+FTN+GMV FK+IFTG+ P T+ Q Sbjct: 3 IRKLFLDYFASKGHAVYESMPLVP-DDPTLLFTNAGMVQFKDIFTGKVPAPTNPRATSCQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T+RHHT FEMLGNFSFG YFKE+AI AW+ +T+ + L Sbjct: 62 LCIRAGGKHNDLENVGYTSRHHTLFEMLGNFSFGDYFKEQAIDHAWEFVTEVLGFSKEVL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE-CIP 184 ++TV++ D+EAF+LW+K + A +I R+ DNFW M +TG CGPCSEIF DQGE Sbjct: 122 WVTVHESDDEAFELWQK--HVDASRIKRMGDKDNFWQMGDTGACGPCSEIFVDQGEEKFH 179 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+A + + K++N+ Sbjct: 180 GSEDYFGGDGDRFLEIWNLVFMQYERSSDGTLTPLPKPSIDTGMGLERVAALKEGKSSNF 239 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D LF +I+ E++TG Y + ++RVI DH+RS FL+A G+ EGRGYVLRRI Sbjct: 240 DSSLFMPMIRKVEELTGKPYHYESGASYRVIADHIRSICFLLAQGVNFDKEGRGYVLRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG P + + +C +MG Y L + + I+ E+ERF T+ Sbjct: 300 LRRAVRHGYLLGLNAPFLHEVAEVVCGQMGDHYGYLKEKREHIKRLTFQEEERFFATIAG 359 Query: 365 GLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 G+ + L + +G+ AFKLYDT G PLD+ +D+L +G+ +D+ +F ++E Sbjct: 360 GMEVFKKELEK--TQSVFSGEAAFKLYDTFGFPLDLTEDMLREKGIR-VDLAAFEACMKE 416 Query: 425 QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL 484 QR+RA+A G G E + L E + + F+GY+ KE Sbjct: 417 QRARAKASWKGSGDELKEGDFALLLEAFPSNSFVGYE--------KEAH----------- 457 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 S ++ + + + V +G+ V+ ++TPFYAE+GGQ GD G G R+ + Sbjct: 458 ---TSKLLAILNRDYKRVSSLGAGESGFVMLEETPFYAESGGQCGDEGELRARG-RI-VA 512 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 VQ + ++ + +E E + + + R ++ +HSATHLLH L LG H Sbjct: 513 QVQGTKKYFGLNLSRIEALDEICEGETLEAVVSRERLEVQKHHSATHLLHAILRQKLGDH 572 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGA 664 V+Q GS + D LRFD +H K +T E+ +E+ VN +I+ ++P TR M ++A ASGA Sbjct: 573 VAQAGSLVEKDRLRFDFSHPKALTHEEVGMVEEEVNRLISLSIPSRTREMRVDEAKASGA 632 Query: 665 AALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 AL G KY D VRVV D G S LCGGTHV ++ I YI ES + AG+RRIE Sbjct: 633 MALFGEKYGDLVRVV-----DFGEASVELCGGTHVENSAHIGSFYITKESGVSAGVRRIE 687 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVE 784 A+ G A + G++ + ++++ + + +E+ KL+ R+L+ + Sbjct: 688 AVCGMAAYHY--GKE-------ALQEIAEAKEILKAKELKLGIEKLK--EQVRELKSEMS 736 Query: 785 DLSCHK---IADVNFMSH---IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 LS K I++ M I+ +++ ++K+ +D ++ + + ++L+ + +EK V Sbjct: 737 ALSSSKSGAISEGVMMGETRVIVETLEAGDIKNSIDEIKNRYEKVAVLLLQVKEEK---V 793 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 ++ DR A + A +L GGGGGGR AQ+GG + +KAD+A+ ++ Sbjct: 794 MLAAGVKGEDRIKAGAWIKEIAPIL-GGGGGGRDDFAQAGGKDASKADEALQSAKNY 849 >gi|153938938|ref|YP_001391861.1| alanyl-tRNA synthetase [Clostridium botulinum F str. Langeland] gi|205830033|sp|A7GGF1|SYA_CLOBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|152934834|gb|ABS40332.1| alanine--tRNA ligase [Clostridium botulinum F str. Langeland] Length = 879 Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust. Identities = 334/916 (36%), Positives = 527/916 (57%), Gaps = 68/916 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG + P + VTT Sbjct: 6 LNEIREEYLKFFESKAHLRLPSFSLVPKNDKSLLLINAGMAPLKPYFTGLQVPPNKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG+T+RH TFFEM+GNFSFG YFK+ I AW+ +T+ L + Sbjct: 66 CQKCVRTG----DIENVGKTSRHGTFFEMMGNFSFGDYFKKEIIPWAWEFITEILKLPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LY+T+Y++D+EA +W + + +I R+ DNFW GPCGPCSEI FD+G Sbjct: 122 KLYVTIYEDDDEALDIWVNKTDVDPKRIFRLGKEDNFWEHG-LGPCGPCSEIHFDRG--- 177 Query: 184 PGGLPGSSEE------GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G +SEE ++ +E WNLVF QF++ + L +IDTGMGLERMAT++ Sbjct: 178 -AGEVKTSEEFVKASDEDKIVEFWNLVFTQFDKDEEGNYNKLANPNIDTGMGLERMATIM 236 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANE 295 Q +++D K ++ +++G Y+ + + ++ R+I DH+RS +F+I+DGILP+NE Sbjct: 237 QNVDTIFEVDTIKAVLDKVCELSGANYKEDRVKDISIRIITDHIRSITFMISDGILPSNE 296 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + + LG + +L + YPEL + + I++ ++ E+ Sbjct: 297 GRGYVLRRLLRRAARHGKTLGIKNTFLHNLTDIVIENCYKNYPELEEKREYIKKVIKLEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 ERF +T+D G+ +L+ + + + ++L+GD AFKLYDT+G P+++ ++IL G++ I Sbjct: 357 ERFDETIDAGMQILNDYIKEVKNNNHKVLSGDKAFKLYDTYGFPVELTEEILEEEGIS-I 415 Query: 414 DIISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 D FN+ ++EQR RAR+ + +G KI ++ T F GYD L Sbjct: 416 DKEGFNKEMKEQRERARSAREETNYMGSEDTILNKIDLNIN-----TDFEGYDKLE---- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 V S V I++ E G + +V TPFYAE GGQ+ Sbjct: 467 -------------------VKSKVAVIIKDEEFKNGMEKGNEGVIVTYNTPFYAEMGGQI 507 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG D + ++ D +K G +H + G + E ++L ++ + R + NH+ Sbjct: 508 GDTGIIYNDSFKAEVIDCKKNISGKVLHFVKILDGKVALEDQVILKVNEERRNNIRKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+LH AL ++G HV Q+GS + + LRFD +H + ++ ELK +E VN I + Sbjct: 568 ATHILHAALIKVVGDHVQQSGSYVDDERLRFDFSHFEAVSEDELKEVEKIVNKEIMKANA 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T++M+ E+A GA AL KY D VRVVSV G S LCGGTHVS++G+I + Sbjct: 628 VNTKVMDIEEAKQQGAIALFDNKYKDDVRVVSV-----GDFSKELCGGTHVSNSGQIGMF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEE 766 I+SE+ + AGIRRIEA+T +A ++ ++ LK A LK ++ ++ ++ + + Sbjct: 683 KIISEAGVAAGIRRIEAVTAFKAMEYVDHKNNILKEAAQILKCNEKELLNKLNHQVLEMK 742 Query: 767 YRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 ++ ++ K KL ED + +I V S + ++D L+ + D ++ +QSG Sbjct: 743 EKEKEIEALKLKLASGAEDEILNNIREIKGVKVASAAVKDIDGNALRDLGDKIRDNMQSG 802 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPN 881 +++L G + + K + + T+D + + V ++ +V + GGGGGGRP MAQ+GG + Sbjct: 803 VVVL-GSNYKGKVLFVAMATKDTVAK--GVHCGKIIKEVATIAGGGGGGRPDMAQAGGKD 859 Query: 882 GNKADQAIAGVASFLK 897 NK + AI V + ++ Sbjct: 860 PNKLEDAIKTVETVVE 875 >gi|218258080|ref|ZP_03474507.1| hypothetical protein PRABACTJOHN_00161 [Parabacteroides johnsonii DSM 18315] gi|218225799|gb|EEC98449.1| hypothetical protein PRABACTJOHN_00161 [Parabacteroides johnsonii DSM 18315] Length = 875 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 354/909 (38%), Positives = 502/909 (55%), Gaps = 80/909 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKDFFASKQHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKQEAINWAWEYLVDVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV++ D+EA W+K L D II +DNFW M +TGPCGPC Sbjct: 121 NPERLYATVFEGSPAEGLSRDDEAAGYWEKF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PG +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRSEEERAAIPGQDMVNKDHPQVIEIWNLVFMQYNRKADSSLEPLPARVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + V RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIADMAGTSYGKDKQQDVAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKESFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD + GK+ +++G AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKN-VISGVDAFTLYDTYGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ +I F+ +++Q+ RAR ++ + +G W LKE G F+GYDL Sbjct: 418 LILRENGMEA-NIDEFDVEMQKQKDRARNAAV-IETGD----WVVLKE--GGCNFVGYDL 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 D ++L + I Q+ +++ ++V DQTPFYA Sbjct: 470 FEC------DAEILR--------------YRQIKQKNKVL--------YQIVLDQTPFYA 501 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ+GDTG I D + + D K+ + VH +V + ++ I+ + R Q Sbjct: 502 EMGGQVGDTGWLIADDETIDVIDT-KRENNLPVH--LVAKLPKDVTVTFTAKINEKKRIQ 558 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V++ Sbjct: 559 CECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEKLVSEK 618 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I N P+ R M +A A GA AL G KY D VRVV +S LCGGTH+ + Sbjct: 619 IRANYPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------NSIELCGGTHIPA 672 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSH-LMGQDEKLKSLASFLKVSQ-GNVVGR 759 TG I L +V ESSI AG+RRIEA+T + A ++ M QD + A F V + + Sbjct: 673 TGMIGSLRVVGESSIAAGVRRIEAVTAEGAENYTFMLQDSLRELRAMFNNVPNLSQTIKK 732 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHII--SEVDSKELKSVMDALQ 817 E E +K + K K+Q +DL K + N + ++ E + +K + A Q Sbjct: 733 AIEENAELKKQVGDYLKEKVQQLKKDLIA-KAVERNGVKVVVFRGEANVDAIKDL--AFQ 789 Query: 818 KKIQSG----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872 K +S + + GI +K +++++++E L+ NA L + +AK++ GGGGG+P Sbjct: 790 IKGESNTDEKVFFVAGIKDGEKCALMVMLSEQLVSEGLNAGKLVKDAAKLI-QGGGGGQP 848 Query: 873 HMAQSGGPN 881 H A +GG N Sbjct: 849 HFATAGGKN 857 >gi|194468332|ref|ZP_03074318.1| alanyl-tRNA synthetase [Lactobacillus reuteri 100-23] gi|194453185|gb|EDX42083.1| alanyl-tRNA synthetase [Lactobacillus reuteri 100-23] Length = 884 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 335/929 (36%), Positives = 519/929 (55%), Gaps = 85/929 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R +L+FF+++GH+++PS+SL+P NDPTL++ NSG+ K F G+ P +T Sbjct: 8 NSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLYIT Y +D +A+ W+++ G++ D +I DNFW + + GP GP +EIF+D+G Sbjct: 124 DPERLYITYYPKDHDAYNRWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEIFYDRG 179 Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + P PG E ERY+EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 180 QEFNNLADDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290 ++ + N++ DLF LI+ +E+ +G K G N + ++I DH+R+ +F I DG Sbjct: 238 VSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGA 297 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ I Sbjct: 298 LPSNVGRGYVIRRLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASV 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCAR 408 + SE++RF TL+ GL LL+ V++ +++ ++G AFKLYDT+G P+++ ++ Sbjct: 358 IESEEDRFSATLNGGLNLLNNVIAEAKENKTNEIDGRTAFKLYDTYGFPIELTKEYAEDE 417 Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F A+ EQ++RAR A + G G +W S KE ++++GY Sbjct: 418 GLT-VDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKED---SKYVGY------- 466 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTPFYAEAGG 526 DLT + ++ + G+ +EA G K +E++FD TPFYAE GG Sbjct: 467 --------------TDLTVDNAKVI-GLAHDGQQADEAQPGDKNIELIFDVTPFYAEMGG 511 Query: 527 QLGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTID 576 Q+ DTG I + G ++ ++ DVQ HA ++ + R E++ L +D Sbjct: 512 QVADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELTTPIKKGARYKLVVD 562 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 ++ NH+ATHLL AL +LG H Q GS + LRFD H +T+ +LK +E Sbjct: 563 RIRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVE 622 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + VN+ I + +PV T + + A GA AL KY D+VRVV + G ++ CGG Sbjct: 623 NMVNEQIWKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDFNTEFCGG 677 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 HV +T E+ L IVSE + AG+RRIEA+T A L +D+ L A+ LKV+Q Sbjct: 678 DHVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAFKFLQDRDDLLTKSAASLKVAQIKE 737 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELK 810 V +VE + E ++ Q + + ++ + + + S I +EV +L+ Sbjct: 738 VPHQVETLQNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQVAGMGQLR 797 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 + D + K S +++L S + KA++L+ V++D A DL + A + GGGG Sbjct: 798 QLADTWRSKALSDVLVLATAS-DGKANLLVAVSDDKTKEGLKAGDLIKAIAPAI-NGGGG 855 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GRP++AQ+GG N +A++ +L K Sbjct: 856 GRPNLAQAGGKNPAGIKEALSQAKDYLDK 884 >gi|304436481|ref|ZP_07396455.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370527|gb|EFM24178.1| alanine--tRNA ligase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 890 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 337/897 (37%), Positives = 511/897 (56%), Gaps = 57/897 (6%) Query: 7 IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +R +L FF +K GH LPS SL+P NDPTL+ +GM P K FTG+ KP + T Q Sbjct: 24 LREAYLNFFAEKKGHLRLPSYSLVPENDPTLLLIGAGMAPLKPFFTGKVKPPRHRIVTCQ 83 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 +CVR G D++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ LT+ +L + +L Sbjct: 84 RCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIELPKEKL 139 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++T+Y D+EA ++W + GLS D I+ + DNFW + GPCGP SEI+ D GE Sbjct: 140 WVTIYPNDDEARQIWLEQPGLSPDHIVPL--EDNFWEIG-PGPCGPDSEIYIDLGEERGC 196 Query: 186 GLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G P S + +R++EIWNLVF Q+++ E +L +IDTG GLER+A+V+Q K N Sbjct: 197 GSPTCSVGCDCDRFLEIWNLVFTQYDRTEDGEYNLLAHKNIDTGCGLERLASVVQNKKTN 256 Query: 244 YDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ DL +I+ + V+ +Y + ++ +VI DH RS +I DGILP+NEGRGYVL Sbjct: 257 FETDLLYPVIEYAANVSQTEYGADPQKDISLKVIADHARSVVIMIMDGILPSNEGRGYVL 316 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDERFG 359 RR +RRA+ + R+LG T+P + + A+ G + EL+ + I +R E+ERF Sbjct: 317 RRTIRRAIRHGRMLGITKPFLDGAVDAVIEIFGDVKDFSELVSKEEYIRRVIRIEEERFA 376 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL +G+ LL+ + L + +IL G+V FKLYDT+G P ++ ++IL GL +D Sbjct: 377 ATLVQGIDLLNEEIDTLKANAQQILPGEVGFKLYDTYGFPRELTEEILHENGLK-LDDAG 435 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F Q +E+QR+RAR S E ++ + G D L Sbjct: 436 FVQEMEKQRNRAR-------SARAENQAVAVPDLSGL-----------------DTSALT 471 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + + N V AI + G +V+ G+ ++ TPF+AE GGQ+GD G + D Sbjct: 472 ENAEVREAN-----VVAIWRDGTLVDMLHDGESAGIILSTTPFHAEGGGQVGDAGLLLSD 526 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 R+ I + ++ +G H A VE G ++ ++ + +D ++ + NH+ATHLL AL Sbjct: 527 VGRIVIRNTKRLPDGTVYHLAYVEEGQIQRGETVQIQLDEVHKLSSARNHTATHLLQAAL 586 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 I+G HV Q GS +TP+ LRFD T+ +P+T +++ IED VN+ I ++ + M Sbjct: 587 QRIVGDHVHQAGSLVTPERLRFDFTNFEPLTQQQVQDIEDLVNEEILSSIDLDISTMPIA 646 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL G KY D VRVV V S LCGG+HVS+TG+I L I+ ES + Sbjct: 647 VAKERGAMALFGEKYGDIVRVVEVPN-----FSIELCGGSHVSNTGQIGLFKIIGESGVA 701 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIH 774 AG+RRIEAITG+ A ++ D +++L+ LKV G++ +V+++ +E + +Q + Sbjct: 702 AGVRRIEAITGRAAYQYVSETDALIRTLSQRLKVKAGDLPTQVDKLIDEKKNMQEQLRTY 761 Query: 775 AKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A + Q + + L +I + + ++ +EL+++ D +K+ +GI++L G++ Sbjct: 762 ADSRDQADAQKLLSDVQEIGKFHVIVGKVNVYSMEELRNIADLACEKLSAGIVVL-GMAD 820 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K ++++ +D + +A GGGGGGRP MAQ+GG QA Sbjct: 821 NDKVNLVVKADQDAVAYGAHAGNIIKAAAKAVGGGGGGRPDMAQAGGKIPQNLSQAF 877 >gi|257068797|ref|YP_003155052.1| alanyl-tRNA synthetase [Brachybacterium faecium DSM 4810] gi|256559615|gb|ACU85462.1| alanyl-tRNA synthetase [Brachybacterium faecium DSM 4810] Length = 902 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 337/931 (36%), Positives = 517/931 (55%), Gaps = 81/931 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S I +L FF K HE++PS+SL+ +DP+++FT +GMVPF G E Y Sbjct: 2 RTSEIHRRWLAFFAKKDHEIVPSASLV-SSDPSILFTIAGMVPFIPYIVGTETAPYPRAA 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD--- 119 +VQKC+R ND++NVGRT RH TFF+M GNFSFG YFK+ AI +W+ LT D Sbjct: 61 SVQKCIRT----NDIENVGRTTRHGTFFQMAGNFSFGDYFKQGAIDYSWEFLTTPQDQGG 116 Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 D RL+ TV+++DEE+++ ++ GL +++R+ + FW + GP GPC E F Sbjct: 117 LGFDPERLWFTVWEQDEESYRHVTEVIGLDPQRVVRLPREEIFWDTGQPGPAGPCGEWHF 176 Query: 178 DQG-----ECIPGGLP---GSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSI 224 D+G E + G +P G + +RYIEIWNLVF Q+ E K + L + SI Sbjct: 177 DRGPEHGPEAVTGTVPEWPGDEQAEDRYIEIWNLVFDQYLRGEGSGKDYPLLGELEQKSI 236 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSS 282 DTG+G+ER+A +LQ K N Y+ID +I+ ++++TG +Y + V+ R+I DH+RS+ Sbjct: 237 DTGLGVERVAFLLQGKQNMYEIDQIFPVIEKAQELTGRRYGAVEEDDVHLRIIGDHVRSA 296 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 L+ADG+ P NEGRGYVLRR++RRA+ RLLGYT+P M LLP + M +YPEL Sbjct: 297 LMLVADGVRPGNEGRGYVLRRLIRRAVRSMRLLGYTQPSMPQLLPISHSLMVESYPELEA 356 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400 I E + +E+E F +TL+ G + +GV+ + ++ +L G+ AF+L+DT+G P+D+ Sbjct: 357 DFARISEIVHAEEEAFRRTLETGTTIFEGVVGAVKEEGGRVLPGEDAFRLHDTYGFPIDL 416 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFI 458 ++ GL +D +F A++EQR RARA + +G T+ +S L ++ G F+ Sbjct: 417 TMEMASEVGLQ-VDAEAFRSAMQEQRERARADAAAKKAGHTDTALYSRLLSQRGGEVPFV 475 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY ED V++ V++++ G++V+ + +VEVV T Sbjct: 476 GY---------TEDT--------------VATTVESVLVDGQLVDTVHAPAQVEVVLATT 512 Query: 519 PFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 PFYAEAGGQL D G ++ G +++ DVQK G+ VH + G L S + TID Sbjct: 513 PFYAEAGGQLADQGQISLTGGGLIEVDDVQKPVRGLIVHRGRLLEGELAQGASAIATIDV 572 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ H+ATH++H +L LG +Q GS +P +RFD + + + + L+ IE Sbjct: 573 ARRGAIARAHTATHMVHESLREELGGSATQAGSENSPGRMRFDFRYGQAVPKSVLEQIEG 632 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN ++ L V + M+ ++A A GA AL G KY D VRVVS+ GG S LCGGT Sbjct: 633 RVNTLLQDELTVTDQQMSLDEAKALGAQALFGEKYGDIVRVVSI----GGDWSRELCGGT 688 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV STG I + ++ E+SI +G+RR++A+ G A H + + L+ LK V Sbjct: 689 HVDSTGAIGTVQLMGEASIGSGVRRVDALVGLSAYRHQAKEHALVSQLSELLK------V 742 Query: 758 GRVEEIWEEYRKL--------QLIHAKRKLQLNVED----LSCHKIADVNFMSHIISE-V 804 G EE+ E R L + + A R QL E S +A V ++H E + Sbjct: 743 GAAEELPERVRALTQRMKDMEKQLAALRGQQLQAEAGKLVESASDVAGVRLIAHDAGEGI 802 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAK 861 + +L+++ L+ ++ + + + ++ +V+ + R A + R +A+ Sbjct: 803 AAGDLRTLALDLRSRLGEDVPVTIAVAGHDGGRAALVIATNATARERGLAAGTMLRGAAE 862 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 + GG GGG+P +AQ GG + A+ V Sbjct: 863 AM-GGRGGGKPDLAQGGGGEPARIPAALTAV 892 >gi|290968328|ref|ZP_06559869.1| alanine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L] gi|290781603|gb|EFD94190.1| alanine--tRNA ligase [Megasphaera genomosp. type_1 str. 28L] Length = 869 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 322/770 (41%), Positives = 460/770 (59%), Gaps = 50/770 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +LEFF++ H L S SLIP NDP+L+ +GM P K FTG+ P VTT Sbjct: 7 NEIRKAYLEFFKRKRHLQLHSFSLIPENDPSLLLIGAGMAPLKPYFTGKLVPPSPRVTTS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D+DNVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ +LD + Sbjct: 67 QKCIRTG----DIDNVGRTARHHTFFEMLGNFSFGDYFKKEAISWAWEFLTEVLELDTDK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY+TVY +D EA+ W + GL ++I + DNFW + E GPCGP SEIF+D G Sbjct: 123 LYVTVYPDDTEAYGYWHTVIGLPEERIFKC--EDNFWEIGE-GPCGPDSEIFYDLGAERG 179 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + + +RY+EIWNLVF Q+ + + + L K +IDTG GLER+A+V+Q+K + Sbjct: 180 CGKPECTVGCDCDRYLEIWNLVFSQYNRTAEGKYEPLAKKNIDTGAGLERLASVIQQKES 239 Query: 243 NYDIDLFKHLIQASEQVT---GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N++ DL +I+ E +T G + V +VI DH+R+ + +I+DGILP+NEGRGY Sbjct: 240 NFETDLIFPIIE--EVITLCHGDYTDPQQKVAMKVIADHIRAITVMISDGILPSNEGRGY 297 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA+ + RLLG + + L+ + MG YPEL + + LI++ + +E+++F Sbjct: 298 VLRRVLRRAVRFGRLLGIRQLFLSGLVETVLAIMGEEYPELREHEALIKKVINTEEKQFS 357 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL +G+ LLD +L+ G + L+G FKLYDT+G P+++ ++I +G+ ID+ F Sbjct: 358 ETLVQGMELLDSLLAKAGTAKTLSGQEVFKLYDTYGFPVELTEEIAAEQGVT-IDMNGFA 416 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A++EQ+ RARA + + SL DR+ L Sbjct: 417 AAMKEQQERARAARADVAAKVLTPDTTSL-----------------------DRQTL--- 450 Query: 480 PPIDLTNGVSSIVKAIV-QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 GV++ ++ + G+ E G+ + V+ D+TPF+AE GGQLGDTG G Sbjct: 451 ---QYAEGVTTATIVMLGKDGQEAEAVHDGETITVILDRTPFHAEGGGQLGDTGVLTAHG 507 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +TD + GI A V G L+ ++ + +D + L+ NH+ATHLLH AL Sbjct: 508 GKAVVTDTKALPNGIIYMIAGVMEGSLKKGETVTVAVDTERHAALARNHTATHLLHTALR 567 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 +LG+HV+Q GS +TPD LRFD TH P+T+AEL+ E VN I +N PV+ MNRE+ Sbjct: 568 QVLGNHVNQAGSLVTPDHLRFDFTHFSPVTAAELREAEQLVNREILKNTPVMVTEMNREE 627 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A GA AL G KY D VRVVS+ G S LCGG+HV ST E+ I+SES Sbjct: 628 AKQKGATALFGEKYGDVVRVVSI-----GDFSCELCGGSHVKSTAEVGTFRIISESGTGT 682 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 G+RRIEAITG A + + + L A+ LKV ++V ++ ++ EE + Sbjct: 683 GVRRIEAITGAAALAKAQAEAQILAQAAAVLKVKPESLVTKLTQLAEELK 732 >gi|325844825|ref|ZP_08168277.1| alanine--tRNA ligase [Turicibacter sp. HGF1] gi|325489012|gb|EGC91400.1| alanine--tRNA ligase [Turicibacter sp. HGF1] Length = 873 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 343/915 (37%), Positives = 520/915 (56%), Gaps = 73/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR+ +L FF+ GH + P + L+P NDP+L++ NSG+ K F G+E P +T Sbjct: 7 SEIRSMYLNFFKSKGHMIEPGAPLVPINDPSLLWINSGVAALKKYFDGREIPNNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YF+E A+ W+LLT + F D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFREEAVTWGWELLTSKEWFGFDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 LY+TVY D+E + LW K+ G+S D I+++ N FW + E GPCGP +EIF+D+G Sbjct: 123 ELLYVTVYPTDQETYDLWIKL-GVSPDHIVKLEYN--FWEIGE-GPCGPNTEIFYDRGTK 178 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMA 234 E I L E +RYIEIWN+VF Q+ + ++ E +LP +IDTGMGLER+A Sbjct: 179 YDPENIGIRLLEEDIENDRYIEIWNIVFSQYNSKEGLDRSEYPMLPNKNIDTGMGLERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 V+Q N+D DLF +I+A+E+++G+KY +VI DH+R+ +F +ADG L +N Sbjct: 239 CVIQGVETNFDTDLFMPIIRATEEMSGVKYTQETATAFKVIADHVRTVTFAVADGALLSN 298 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ Y + LG M L+P + M YP + L+++ ++SE Sbjct: 299 EGRGYVLRRLLRRAVRYGKKLGIDRAFMYELVPVVADIMKDYYPYVCDKIELVQKVIKSE 358 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 ++RF +TL G +L +++ +D+ ++G AF LYDT+G P ++ + G +D Sbjct: 359 EDRFRQTLADGEKILTDLIAKC-EDKTISGKDAFMLYDTYGFPYELTLEYAEEAGFT-VD 416 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F+ +E QR RAR + S ++ +L ++F+GY L Sbjct: 417 KEGFDAQMEAQRERARNAREDVESMHSQNA--ALMSFKTPSKFVGYHQL----------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGC 533 +S V ++Q GE+V+ +GQ V+ D TPFYAE+GGQ+ DTG Sbjct: 464 ------------STTSNVILLLQNGEVVDSLTGAGQ---VILDTTPFYAESGGQVADTGM 508 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 + +TDV K G +H V+ G L +V + +NR L+ NH+ATHLL Sbjct: 509 MTTSAANVMVTDVIKAPNGQHLHSVQVD-GTLSLNDEVVCQVQVENRLDLTKNHTATHLL 567 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL ++G+H +Q GS ++ D LRFD T+ + +TS EL+ IE VN+ I ++PV Sbjct: 568 HQALKDVIGAHANQAGSLVSADRLRFDFTNMQGLTSEELQRIEAIVNEKIWASIPVEVFE 627 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA AL KY + VRVV G +S LCGG HVS+T EI L I+SE Sbjct: 628 KSIEEAKQMGAMALFSEKYGETVRVVK-----AGDYSIELCGGCHVSNTSEIGLFKIISE 682 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----- 768 S I AG RRIEA+TG+ A ++ E+ +++ LK + RVE I +E + Sbjct: 683 SGIGAGTRRIEAVTGKGAYQYMNSFIERFAAVSETLKTKPALLEERVEGILDELKEAHRE 742 Query: 769 ----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K +L H K K +N + ++A + ++ + +VD L+ ++D ++++ S + Sbjct: 743 NDSLKSKLSHLKMKEIVN----NTREVAGITVLTANLVDVDMNHLRQMVDEFKQQLSSAV 798 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNG 882 I+L + + K ++ VT D + + V ++ +V + GGGGGGRP MAQ+G + Sbjct: 799 IVLAS-AVDGKVAISCGVTPDYVKQ--GVHAGKIVKEVATICGGGGGGRPDMAQAGAKDA 855 Query: 883 NKADQAIAGVASFLK 897 K ++A+ V +LK Sbjct: 856 TKIEEALKNVDEWLK 870 >gi|298384931|ref|ZP_06994490.1| alanine--tRNA ligase [Bacteroides sp. 1_1_14] gi|298262075|gb|EFI04940.1| alanine--tRNA ligase [Bacteroides sp. 1_1_14] Length = 872 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 345/923 (37%), Positives = 506/923 (54%), Gaps = 88/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD G GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++I FN +++Q+ RAR ++ + +G W +L+E G T+F+GY Sbjct: 418 LILRENGMT-VNIEEFNTEMQQQKQRAR-NAAAIETGD----WVTLRE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDCTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDSALREVLGKHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY +RVRV+ S CGG HV Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFG------SSIEFCGGIHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG---NV 756 ++TG I ++ I+SESS+ AG+RRIEA TG R L + + L S + + Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAPDLGIAI 730 Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 +EE E+Y K + K +L N++++ H I + F + + +EV +K Sbjct: 731 RKYIEENAGLKKQVEDYMKEKEASLKERLLKNIQEI--HGIKVIKFCAPLPAEV----VK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G K + ++++++L+ A +L + +AK++ GGGG Sbjct: 785 NIAFQLRGEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + + AI V Sbjct: 844 GQPHFATAGGKNTDGLNAAIEKV 866 >gi|78188347|ref|YP_378685.1| alanyl-tRNA synthetase [Chlorobium chlorochromatii CaD3] gi|123580381|sp|Q3ATN3|SYA_CHLCH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78170546|gb|ABB27642.1| alanyl-tRNA synthetase [Chlorobium chlorochromatii CaD3] Length = 886 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 333/892 (37%), Positives = 498/892 (55%), Gaps = 87/892 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +FL+FF + GH ++ S+ +IP +DPTL+FTN+GM FK++F + Y QK Sbjct: 6 IRQSFLDFFAQKGHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLDKGSRPYVRAADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+K AI AW+L T + L + RLY Sbjct: 66 CIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKLEAITWAWELFTVVWKLPKERLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 TVY +D+E+F++WK+ + ++ D I+R DNFW M ETGPCGPCSEI D P Sbjct: 126 ATVYQDDDESFQIWKEQTDINPDHILRFGDKDNFWEMGETGPCGPCSEIHID---LTPD- 181 Query: 187 LPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS +E R IE+WNLVF+Q+ +Q+ LPK +DTGMG ER+ V+Q K Sbjct: 182 --GSGKELVNVGDYRVIELWNLVFIQYNRQSDGHLEPLPKKHVDTGMGFERIVAVMQGKG 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F+ L ++TG++Y + N + RVI DH R+ +F ++DG +P+NEGR Sbjct: 240 SNYDSDVFQPLFDKITEITGVRYGASLDAPNDIAMRVIADHARTLTFALSDGAMPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ Y+R LGY +P++ L+ L MG +PEL+Q + + +++E+E Sbjct: 300 GYVLRRILRRALRYSRNLGYHQPILHQLVGTLALAMGEVFPELVQRQEAVSAIIKAEEES 359 Query: 358 FGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ L ++ L +++ G AF+LYDT+G P D+ + + G +D Sbjct: 360 FIVTLDRGIDLFSELVEKLRASNGKVIAGSDAFRLYDTYGFPFDLTRLMAADEGFE-VDG 418 Query: 416 ISFNQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 F ++EQ++RAR+ + + WFS A+QF+GYD L Sbjct: 419 EGFEHCMQEQKNRARSDRREKQRVDDDGAKWQWFS---DVRASQFVGYDHL--------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V S ++QG K+ +V D TPFYAE+GGQ GD G Sbjct: 467 ---------------VHSATITGIRQG--------NGKLLLVLDATPFYAESGGQTGDNG 503 Query: 533 CAIGDGIRLQITDVQKKAEGIF---------VHHAIVER---GILRTEMSLVLTIDYQNR 580 RL + D K + I V + V+ I+ E+++ ++ R Sbjct: 504 WLENSRYRLHVADTVKDGDAIVHVVSDAFDKVQDSAVQPEDVEIVEQELAVAASVHRTAR 563 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NH+ATHL+H AL ILG HV Q GS ++P+ LRFD +H +T E++++E VN Sbjct: 564 QDAERNHTATHLMHAALRRILGEHVQQKGSFVSPERLRFDFSHFSKLTDEEIEAVEIAVN 623 Query: 641 DIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I + PVV + +DA+A GA A G KY DRVRVV + G+ S LCGGTHV Sbjct: 624 TQIREAEPVVKHADVLFDDAVAKGALAFFGDKYADRVRVVEIP----GM-SVELCGGTHV 678 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN--VV 757 + G I L I+SE+S+ +G+RRIEA+TG+ A L + +L+ + LK ++G+ VV Sbjct: 679 DNIGRIGLFKIISEASVASGVRRIEAVTGKAAEKLLWQEYRELQQIRQLLK-AKGDEAVV 737 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSV 812 +V + + ++L+ A+ + VE L+ +++ ++ + D + ++ Sbjct: 738 EKVAGLMDSKKELEKELAESRAAALVEQLTAALQAAPEVSGCRVLAIEVKNNDGETMRQA 797 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD---LARLSAK 861 AL+ K + +L + E VL+ D R ++D L R +AK Sbjct: 798 TMALRDKAPCAVGLLATV--EAGKVVLVSFATDEAVRTCSLDAGALIREAAK 847 >gi|225026503|ref|ZP_03715695.1| hypothetical protein EUBHAL_00752 [Eubacterium hallii DSM 3353] gi|224956191|gb|EEG37400.1| hypothetical protein EUBHAL_00752 [Eubacterium hallii DSM 3353] Length = 867 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 333/900 (37%), Positives = 501/900 (55%), Gaps = 55/900 (6%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P + VTT QKC+R Sbjct: 2 YLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRKRVTTCQKCIRT 61 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY 130 G D++NVG+T+RH TFFEMLGNFSFG YFK AI +W+ LT+ LD RLY +VY Sbjct: 62 G----DIENVGKTDRHGTFFEMLGNFSFGDYFKHEAIAWSWEFLTEVVGLDADRLYPSVY 117 Query: 131 DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS 190 ED+EAF +W+ G++ ++I + DNFW GPCGPCSEI++D+GE G PG Sbjct: 118 LEDDEAFAIWRDEIGIAPERIFKFGKEDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPGC 176 Query: 191 SE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDL 248 + + +RY+E+WN VF QFE L + +IDTGMGLER+A ++Q+ + +D+D Sbjct: 177 TVGCDCDRYMEVWNNVFTQFENDGHNNYTTLKQKNIDTGMGLERLAVIVQDVGSIFDVDT 236 Query: 249 FKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMR 306 + L +V Y+ N + ++ R+I DH+RS++F+I+DGI+P+NEGRGYVLRRI+R Sbjct: 237 IRSLRDKICEVAKKTYKENEQDDISIRLITDHIRSATFMISDGIMPSNEGRGYVLRRIIR 296 Query: 307 RAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366 RA + RLLG + L + YPEL + K I + E+ +F KT+D+GL Sbjct: 297 RAARHGRLLGIEGKFLAELSKTVIEGSKDGYPELEEKKDFIYNVIIQEEGKFNKTIDQGL 356 Query: 367 VLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEE 424 +L + + + + L+G AFKLYDT+G PLD+ ++IL +G ++ +F + E Sbjct: 357 AILADLEESMKEKGVKELDGQDAFKLYDTYGFPLDLTKEILEEKGYT-VNEEAFQTCMNE 415 Query: 425 QRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 Q+ +AR A G ++ S+ +T F+GY+ Sbjct: 416 QKEKARSARKTTNYMGADVTVYESIDPSVTST-FVGYE---------------------- 452 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 T S + + E+ E GQ + D+TPFYA GGQ D+G + Sbjct: 453 -TQECDSKITVMTTDTELTEALTDGQAGTIFVDETPFYATGGGQHADSGVITCKDGEFVV 511 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 DV K G H V +G+ + ++ L+++ R + HSATHLL +L T+LG+ Sbjct: 512 EDVVKMLGGKIGHIGHVTKGMFKVGDTVTLSVNKAQRADTAKGHSATHLLQKSLRTVLGN 571 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 HV Q+GS + D LRFD +H + +T+ EL +E VN+ IA++L V T IM+ ++A +G Sbjct: 572 HVEQSGSYVDKDRLRFDFSHFQALTAEELAEVEKMVNEKIAEDLTVSTEIMSVDEAKNTG 631 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D+VRVV++ G S C GTHV TG I I+SE+ + AGIRRI Sbjct: 632 AMALFGEKYGDKVRVVTM-----GDFSKEFCAGTHVPHTGVIKAFKIISETGVAAGIRRI 686 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV 783 EA+TG + + +++ L A K + +++ + +E + L + K K Q+ Sbjct: 687 EALTGDGVMKYYLDEEKTLHEAAKAAKAEPHKLAEKIQSMLDEIKALSAENEKLKDQIAK 746 Query: 784 EDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 +++ + D + + +VD L+++ D L+ KI SG+++L K ++ Sbjct: 747 SEVADVMDQVVEAGDYKVLPVSVKDVDMNALRTLGDDLKGKIGSGVVILAS-DMGGKVNL 805 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 ++ T+D + A L GGGGGGRP+MAQ+GG N AG+ + L+K Sbjct: 806 IVTATDDAVKAGAHAGKIIKEAAALVGGGGGGRPNMAQAGGKNP-------AGIKAALEK 858 >gi|256545145|ref|ZP_05472511.1| alanine--tRNA ligase [Anaerococcus vaginalis ATCC 51170] gi|256399186|gb|EEU12797.1| alanine--tRNA ligase [Anaerococcus vaginalis ATCC 51170] Length = 870 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 329/908 (36%), Positives = 515/908 (56%), Gaps = 58/908 (6%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 ++ +R +L FF K H +L S SLIP +D +L+ N+GM P K FTG++K T Sbjct: 6 MNELRKEYLNFFGSKKNHTVLKSFSLIPEDDESLLLINAGMAPLKKYFTGEKKMKNNRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+C+R G D++ VG T RH TFFEMLGNFSFG YFK AI A++ LT ++D+ Sbjct: 66 SSQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAYEFLTVNLEIDK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 L+++VY+ D+EAF +W G++ D+I+R DNFW + E GPCGP SEIF D+G Sbjct: 122 NLLWVSVYENDDEAFDIWHDEIGIAKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGIE 180 Query: 181 ECIP--GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + + PG +++ +R++E+WNLVF QF + +E L +IDTGMGLERMA VLQ Sbjct: 181 KAVDENDNKPG-NDDSDRFMEVWNLVFTQFNKNANKEYIPLAHPNIDTGMGLERMAMVLQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 K N +++D+ +++I+ E+++ KY+ N + ++ RVI DH ++ +F+++DGI P+NE Sbjct: 240 NKDNIFEVDVNQNIIKEIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEK 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + +LLG + ++ + Y EL + I + E+E Sbjct: 300 RGYVLRRLIRRAFRHGKLLGIEGEFLSSIVDCVIDSYKVEYDELTNNREKIINIIEKEEE 359 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F KT+D GL +L+ + L ++ +IL G AFKLYDT+G PLD+ ++IL L +D Sbjct: 360 NFQKTIDSGLDILNSYIKELKENNKDILKGKDAFKLYDTYGFPLDLTKEILDENDLK-VD 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F++ +E QR+ AR + E I +++ T F+GY+ Sbjct: 419 TKEFDEYMENQRNLARNARKSDAGWSLESINV---DEFKQTDFVGYENFE---------- 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++S + + E V G K +V D+T FYAE GGQ+ DTG Sbjct: 466 -------------INSNIIGLFDSKEKVNFIKKGHKGIIVSDKTSFYAEGGGQVADTGFI 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 I D + ++ +VQKK + + +H+ VE G L + + + ++ Q R ++ NH+ATHLL Sbjct: 513 ITDDAKARVYNVQKKKD-VILHYVEVEEGKLES-CNALFKVNKQRRLDITRNHTATHLLD 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +L V Q GS + LRFD T+ +T E+K IED VN+ I + LPV IM Sbjct: 571 QALRNLLSDEVKQAGSLVDEYKLRFDFTYPNALTKDEIKKIEDEVNEKIREQLPVKKEIM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + +++ GA L KY D VRVVSV +S LCGG HV+++ EI++ I+ ES Sbjct: 631 SYKESEKLGAIGLFEDKYKDMVRVVSV-----SDYSKELCGGCHVNNSSEILMFKIIQES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S +GIRRIEAITG++ +L E + S++ LK + N++ R + + EE ++L+ Sbjct: 686 SAASGIRRIEAITGKKVYEYLNNNIELINSISDELKTNPKNILSRAKSLNEEIKQLKDDI 745 Query: 775 AKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K K + N +D+ I +N + H D L++ + ++ K + II+ Sbjct: 746 QKLK-EFNEKDIYKDMESEVKDINGINLLVHKFDNEDLDTLRNFENRIKDKYKDLIIVFA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + K+ K V++ L D++NA + + +K+ GG GGG+ + AQ+GG + +K D+A Sbjct: 805 TV-KDNKIIFTASVSDSLTDKYNAGKIVKEVSKIT-GGNGGGKKNFAQAGGKDISKLDEA 862 Query: 889 IAGVASFL 896 + V + Sbjct: 863 LEKVYDLI 870 >gi|295396919|ref|ZP_06807043.1| alanine--tRNA ligase [Aerococcus viridans ATCC 11563] gi|294974853|gb|EFG50556.1| alanine--tRNA ligase [Aerococcus viridans ATCC 11563] Length = 880 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 348/924 (37%), Positives = 521/924 (56%), Gaps = 80/924 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F+Q GH + PS+SL+P DP+L++ NSG+ K F G P +T Sbjct: 7 AEIRQKWLDFWQSKGHSVEPSASLVPVQDPSLLWINSGVATLKKYFDGSVVPENPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG T RHHT FEMLGNFS G YFK I AW+ LT E LD Sbjct: 67 QKSIRT----NDIENVGVTARHHTLFEMLGNFSIGDYFKAEVIPWAWEFLTDEKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T Y ED E +LW+K +GLS + + + DNFW + GPCGP +EIF+D+G Sbjct: 123 EKLYMTYYPEDTETVELWRKATGLSDNHYVPV--EDNFWDLG-AGPCGPDTEIFYDRGVK 179 Query: 181 ---------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E PGG E ERY+EIWN+VF QF E L +IDTGMGLE Sbjct: 180 YQDLEDSDPEMYPGG------ENERYLEIWNIVFSQFNHMPNGEYVPLKHKNIDTGMGLE 233 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 RM +V+Q+ N++ DLF +I+ E + T +KY + V+++VI DH+R+ +F I+D Sbjct: 234 RMTSVIQDAPTNFETDLFLPIIKEIETLGTAVKYGDKPETDVSYKVIADHVRAVTFAISD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+NEGRGY+LRR++RRA+ +AR LG + + L+P + M YPE+ + I+ Sbjct: 294 RALPSNEGRGYILRRLIRRAIMHARRLGIKDNFLTKLVPVVADIMADFYPEVKADQNFIQ 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +++E++RF +T++ G ++ V+S L + ++++G AFKLYDT+G PL++ Q+ L Sbjct: 354 DVIKTEEDRFNETINEGEAIIQEVISTLEAEHNKVMSGAQAFKLYDTYGFPLELTQEYLE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 G+ +D+ F +A++ QR RARA S G+ + L E + ++GYD L Sbjct: 414 EVGI-DVDLSGFEEAMKAQRERARAARKDSTGMAVQSE-----VLSEIDVTSSYVGYDQL 467 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 V + + IV +V A +G +V +V +QTPFYAE Sbjct: 468 V-----------------------VETRINTIVLGDALVSAAEAGDEVYLVAEQTPFYAE 504 Query: 524 AGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG + + +L + +V + G +H + I+ + ++ L +D + Sbjct: 505 MGGQIADTGDVLDEDGQLIGHVVNVVRAPNGQHLHEVKLAAAIV-LDQTVQLVVDRRRHH 563 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL +LG H +Q GS +T D LRFD +H +T EL +E VN+ Sbjct: 564 SIEKNHTATHLLHQALKDVLGDHANQAGSLVTADHLRFDFSHFGQVTDEELAEMEAKVNE 623 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 IA+ PVVT + + ++A A+GA AL G KY VR+V + + S LCGGTHV + Sbjct: 624 AIAEAFPVVTTVTSIDEARAAGAQALFGEKYGSEVRMVDINH-----WSIELCGGTHVGN 678 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRV 760 T EI L I SES I AG+RRIEA+T A Q+ LK +A+ LK + N+V R+ Sbjct: 679 TAEIGLFKITSESGIGAGVRRIEAVTSLAAIQEYKIQENILKQIAANLKAGKFLNIVSRL 738 Query: 761 EEIWEEYRK-LQLIHAKR-KLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDA 815 ++ EE+++ LQ ++A R K+ + V + I V ++ +L+ + D Sbjct: 739 QQFREEHKETLQQLNALRDKMNAQAAGQIFDHVETVGAYTVIAEHVPNRSMDDLRKIADE 798 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 ++K S I++L S + KA++LI V +D + A DL + A + GGGGGGRP M Sbjct: 799 WKQKGSSDILVL-ATSVDDKANLLIAVGQDAVKAGVKAGDLIKQVAPKI-GGGGGGRPDM 856 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ+GG ++A+A + K Sbjct: 857 AQAGGKKPAGIEEALAFAKEIIGK 880 >gi|260591299|ref|ZP_05856757.1| alanine--tRNA ligase [Prevotella veroralis F0319] gi|260536665|gb|EEX19282.1| alanine--tRNA ligase [Prevotella veroralis F0319] Length = 888 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 337/938 (35%), Positives = 507/938 (54%), Gaps = 94/938 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120 Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD + LY+TV++ D+EA W+K + I+ +DNFW M +TGPCG Sbjct: 121 HLDPKDLYVTVFEGDKAEGISRDDEAASYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178 Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PCSEI D + E +PG +++ + IEIWN+VFMQF ++ L IDT Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVN 271 GMG ER+ ++Q K +NYD D+F +I+ E+++G KY EG N + Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIEEIERLSGKKYNHTFPEGPNGEGINDEQKVDIA 298 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L E M L+ L Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFMYKLINVLV 358 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVA 387 EMG AYPEL + LI ++ E++ F +TLD+G+ LL+G + L GK E L+G A Sbjct: 359 HEMGVAYPELTAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHGKTE-LDGKEA 417 Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447 F+L+DT+G PLD+ + ++C +D FN+ +E+Q++RAR ++ + +G W Sbjct: 418 FRLFDTYGFPLDLTE-LICGENGYTVDEKQFNEEMEQQKARARNAAV-VENGD----WEI 471 Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507 ++E G +F+GYD + RKV +K Sbjct: 472 VRE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF------------------------- 504 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 E+V D TPFY E GGQ+GD G + + + + D K+ +H IV+ Sbjct: 505 ---YEIVLDYTPFYGEMGGQVGDQGVLVNEDETINVIDT-KRENNQSIH--IVKELPKDV 558 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 E + ID R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + I Sbjct: 559 EADFMACIDTDKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKI 618 Query: 628 TSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 T EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 619 TDEELRQVEKLVNEMIRKDYPLDEHRDTPMEEAKEMGAVALFGEKYGDKVRVVRFG---- 674 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL- 745 S CGG H STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L Sbjct: 675 --PSCEFCGGIHAKSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYALEDTLRDLK 732 Query: 746 -----ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800 A LK V + + +E + + R + V+ + V+ + + Sbjct: 733 AMFNNAKDLKAVLTKFVEENDAMKKEVERFRAQAVDRAAKSLVD--RAETVNGVHVVKAV 790 Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARL 858 + VD K ++ +++ + ++ ++G E + + I++++D++ NA + R Sbjct: 791 LP-VDPASAKDIVFKVREALPENLVCVLGSVYENRPQLSIMLSDDMVKEHDLNAGKVIRE 849 Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +AK++ GGGGG+PH AQ+GG + + + A+ V L Sbjct: 850 AAKLI-KGGGGGQPHYAQAGGKDADGINAAVEKVIELL 886 >gi|154493963|ref|ZP_02033283.1| hypothetical protein PARMER_03308 [Parabacteroides merdae ATCC 43184] gi|154086223|gb|EDN85268.1| hypothetical protein PARMER_03308 [Parabacteroides merdae ATCC 43184] Length = 875 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 353/908 (38%), Positives = 503/908 (55%), Gaps = 78/908 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F +FF H+++PS+ ++ DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRESFKDFFASKQHQIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVPRKYPR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKQEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY TV++ D+EA W+K L II +DNFW M +TGPCGPC Sbjct: 121 NPDRLYATVFEGSPAEGLSRDDEAAGYWEKF--LPKAHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PG +++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPEEERAAIPGQDMVNKDHPQVIEIWNLVFMQYNRKADGSLEPLPARVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +I+ + G Y + V RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPIIKVIADMAGTAYGKDKQQDVAMRVIADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y L E M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLDRKESFMYKLLPVLIETMGDAYPELIAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD + GK+ +++G AF LYDT+G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKKMEETKAAGKN-VISGVDAFTLYDTYGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ +I FN +++Q+ RAR ++ + +G W LKE G F+GYDL Sbjct: 418 LILRENGMEA-NIDEFNVEMQKQKDRAR-NAAAIETGD----WVVLKE--GGCNFVGYDL 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 D ++L + I Q+ +++ ++V DQTPFYA Sbjct: 470 FEC------DAEILR--------------YRQIKQKNKVL--------YQIVLDQTPFYA 501 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ+GDTG I D + + D K+ + VH +V + + I+ + R Q Sbjct: 502 EMGGQVGDTGWLIADDETVDVIDT-KRENNLPVH--LVTKLPKDVTATFTAKINEKKRIQ 558 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHSATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++ +E V++ Sbjct: 559 CECNHSATHLLHEALREVLGTHVEQKGSYVSPDSLRFDFSHFQKVTDEEIRKVEKLVSEK 618 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I N P+ R M +A A GA AL G KY D VRVV +S LCGGTH+ + Sbjct: 619 IRANYPLEEHRNMPIAEAKALGAMALFGEKYGDEVRVVKYG------NSIELCGGTHIPA 672 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQ-GNVVGR 759 TG I L +V ESSI AG+RRIEA+T + A ++ + L+ L A F V + + Sbjct: 673 TGMIGSLRVVGESSIAAGVRRIEAVTAEAAENYTFMLQDSLRELRAMFNNVPNLSQTIKK 732 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD-ALQK 818 E E +K + K K+QL ++L K + N + +I+ + ++ D A Q Sbjct: 733 AIEENAELKKQVSDYVKEKVQLLKKELIA-KAVERNGVK-VIAFRGEASVDAIKDLAFQI 790 Query: 819 KIQSG----IIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPH 873 K +S + + GI +K +++++++E L+ + NA L + +AK++ GGGGG+PH Sbjct: 791 KGESNTEEKVFFVAGIKDGEKCALMVMLSEPLVAEGLNAGKLVKEAAKLI-QGGGGGQPH 849 Query: 874 MAQSGGPN 881 A +GG N Sbjct: 850 FATAGGKN 857 >gi|33864421|ref|NP_895981.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9313] gi|41018180|sp|Q7V419|SYA_PROMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33641201|emb|CAE22331.1| Alanyl-tRNA synthetase:DHHA1 domain [Prochlorococcus marinus str. MIT 9313] Length = 892 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 341/915 (37%), Positives = 521/915 (56%), Gaps = 82/915 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63 S IRT FL FF + H+++PS+SL+P DPT++ T +GM+PFK +F GQ E+P +A T+ Sbjct: 18 SEIRTAFLTFFAERAHQVIPSASLVP-EDPTVLLTIAGMLPFKPVFMGQAERPAPRA-TS 75 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD + Sbjct: 76 SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELTTEVFGLDPK 131 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 L ++V+ ED+EA +W+ + G++ +I+R+ DNFW+ TGPCGPCSEI++D + Sbjct: 132 NLVVSVFREDDEAETIWRDVVGVNPKRIMRMDEADNFWASGPTGPCGPCSEIYYDFKPDL 191 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G E+ R++E +NLVFMQ+ + + L +IDTGMGLERMA +LQ NN Sbjct: 192 -GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPNN 250 Query: 244 YDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ D+ LI+ + + G+ Y+ + +VI DH R+ + LI DG+ +N GRGY+ Sbjct: 251 YETDIIYPLIETAAGLAGLDYQKLDEKGKTSFKVIGDHCRAITHLICDGVTASNLGRGYI 310 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RR++RR + + RL+G +P + + A M AYP+L + + LI L E+ RF + Sbjct: 311 MRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFLE 370 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG +L VL + ++++G AF+LYDT+G PL++ Q+I GL +D+ F Q Sbjct: 371 TLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFEQ 427 Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 A+++QR RA+A ++ + G E++ L+ AT+F GY++L Sbjct: 428 AMDQQRQRAKAAAVSIDLTLQGAIEQMAAELE----ATRFQGYEVL-------------- 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---- 533 ++P V A+V GE E A +G V++V D TPFY E+GGQ+GD G Sbjct: 470 EQP---------CCVLALVVNGESAERASAGDSVQIVLDTTPFYGESGGQVGDHGVLSGE 520 Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + G+G+ + + DV + +FVH +ERG L + +D RR+ NH+ATHL Sbjct: 521 GSGGNGVIVTVDDVSRH-RNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHL 579 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++ S + Q GS + D LRFD ++ +T+ EL+ IE +N I ++ ++ Sbjct: 580 LQAALKQVVDSGIGQAGSLVDFDRLRFDFHCARAVTAKELEQIEALINGWIMESHDLIVE 639 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ ++A A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IV+ Sbjct: 640 EMSIQEAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVA 694 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 ESS+ AGIRRIEA+ G ++L +DE +K L LKV +V RV + EE + Q Sbjct: 695 ESSVAAGIRRIEAVAGPAVLAYLNERDEVVKKLLERLKVQPSEIVERVTSLQEELKSSQK 754 Query: 772 -LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 L A+ +L + + V +++ +D E + +A Q G++ +G Sbjct: 755 ALTAARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQ-----GLLDQLG- 808 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHM 874 A+V++ D D + +A +++ G G RP++ Sbjct: 809 ---DGAAVVLGGLPDPSDEGKVILVAAFGKQLIAQGQQAGKFIGSIAKRCGGGGGGRPNL 865 Query: 875 AQSGGPNGNKADQAI 889 AQ+GG +G D A+ Sbjct: 866 AQAGGRDGAALDGAL 880 >gi|290890700|ref|ZP_06553770.1| hypothetical protein AWRIB429_1160 [Oenococcus oeni AWRIB429] gi|290479675|gb|EFD88329.1| hypothetical protein AWRIB429_1160 [Oenococcus oeni AWRIB429] Length = 885 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 335/923 (36%), Positives = 504/923 (54%), Gaps = 75/923 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR FL+FFQ GH++ PS SLIP +DP+L++ NSG+ K F G P +T Sbjct: 5 NSAQIRQMFLDFFQSKGHKIEPSQSLIPQDDPSLLWINSGVATLKKYFDGSVIPDNPRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI AW+LLT + + Sbjct: 65 NAQKSIRT----NDIENVGHTARHHTFFEMLGNFSVGDYFKKEAIPWAWELLTSPEWYGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L+IT Y D E +LW+ + A I +DNFW + E GP GP +E+FFD+G Sbjct: 121 EPEKLFITYYPRDTETKELWESQADFVAGHTI--PQDDNFWDIGE-GPSGPDTEVFFDRG 177 Query: 181 -----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSID 225 E PGG E ERY+EIWN+VF QF + + LP +ID Sbjct: 178 PKFQNLPDNDPEMYPGG------ENERYLEIWNIVFSQFNHLPGLTDNSKYPELPHKNID 231 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSS 283 TGMGLER+ ++ + N++ DLF +I+ EQ++G +Y + V+ +VI DH+R+ + Sbjct: 232 TGMGLERVVSIFENAPTNFETDLFLPIIRKVEQLSGKRYGKIKDEDVSFKVIADHIRAVT 291 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 F I+DG LP N GRGYV+RR++RRA+ + R LG +P + L+P + M + YPE+++ Sbjct: 292 FAISDGALPGNTGRGYVIRRLLRRAVMHGRKLGIEKPFLTQLVPIVGKIMEAYYPEILEN 351 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIM 401 + I ++SE+ RF KTL GL LLD ++ KD ++G AFKL+DT+G PL++ Sbjct: 352 EDKIIPVIQSEEGRFNKTLTAGLNLLDDLIEKAHKDNATHISGKDAFKLFDTYGFPLELT 411 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGY 460 ++ GL +D SF++ +++Q++RAR L + G ++ SLK + ++G+ Sbjct: 412 EEQAADAGLT-VDTTSFDKEMKDQQNRARTAQGKLKTFGFQDEALMSLKV---PSVYVGW 467 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 ++ +D + + AI+ + V++A +GQK ++FD+TPF Sbjct: 468 -----------------KQSSVD-----DAKIAAIIVDDQQVDDAKAGQKALLIFDKTPF 505 Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE GGQ+ D G A + Q+TDVQ +H A + L+ + L +D Sbjct: 506 YAEMGGQVADQGTVQAANGKVLAQVTDVQNAPNKQHIHTAKLISD-LKIGQKVNLRLDMH 564 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 +S NH+ATHLL AL ++ ++ Q GS + PD LRFD TH P+ + L IED Sbjct: 565 RHVAVSKNHTATHLLDQALRNVIAGNIHQAGSLVEPDYLRFDFTHQGPVPTETLDRIEDL 624 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 VN IA LPV + E A GA A+ G KY +VRVVS+ G + GGTH Sbjct: 625 VNQKIADALPVSWIETDIESAKKLGAVAVFGEKYGKKVRVVSI-----GDFNKEFDGGTH 679 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVV 757 +T E+ L IVSES I AG RRIEA+TGQ A L ++ LK A FL + +V Sbjct: 680 AKNTSELGLFKIVSESGIGAGTRRIEAVTGQSAFKMLKNHEKLLKKAAEFLSAQKLADVP 739 Query: 758 GRVEEIWEEYRKLQ-LIHAKRKLQLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815 ++ ++ + +Q + + NV D K + S+I +++D++ + + Sbjct: 740 DKIVDLQNNLKNVQKQVESLSDKAANVAADKIFEKTLEAGKYSYIAAQIDNQTVDGLRKI 799 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHM 874 + + Q + L+ I+ L+V + A ++ + +S K+ GGGGGRP Sbjct: 800 VDEWRQRAVSDLIIIATNNNGKALLVAASAKPNEVKAGNVVKAISPKI--QGGGGGRPDF 857 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 AQ+GG N A+A V+ +L+ Sbjct: 858 AQAGGKNPAGIANALASVSEYLE 880 >gi|312195530|ref|YP_004015591.1| alanyl-tRNA synthetase [Frankia sp. EuI1c] gi|311226866|gb|ADP79721.1| alanyl-tRNA synthetase [Frankia sp. EuI1c] Length = 883 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 345/909 (37%), Positives = 499/909 (54%), Gaps = 60/909 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL F++ GH ++PS+SLI DPTL+ N+GMVPFK F G P T+V Sbjct: 4 AEIRRRFLNHFEQRGHLVVPSASLI-AEDPTLLLVNAGMVPFKPYFLGDLTPPAPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR D+DNVG+T RH +FF+M GNFSFG YFK I A++LLT+ + Sbjct: 63 QKCVRT----VDIDNVGQTARHASFFQMCGNFSFGDYFKAEVIPWAFELLTEGYGFKPDD 118 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+ TVY +D+EA ++WK + L A++I R DN+WSM GPCGPCSEI+FD+G Sbjct: 119 LWATVYLDDDEAEEIWKGL--LPAERIQRRGKEDNYWSMGVPGPCGPCSEIYFDRGPAY- 175 Query: 185 GGLPGSSEEGE-RYIEIWNLVFMQFEQ-QNKQERFI----LPKMSIDTGMGLERMATVLQ 238 G G E E RY+E+WNLVFMQFE+ + F LP SIDTGMGLERMAT+LQ Sbjct: 176 -GRDGGPEADENRYLEVWNLVFMQFERGEGAGYEFPILGDLPAKSIDTGMGLERMATLLQ 234 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 N Y+ID+ + ++ + ++TG Y + + V RVI DH R+++ LIADG++P+NEG Sbjct: 235 GVENLYEIDISRPVLDRAGELTGKTYGAQHGDDVRLRVIADHTRTAAMLIADGVVPSNEG 294 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA+ RLLG EP+M +L + + MG YPEL+ I E+ Sbjct: 295 RGYVLRRMLRRAVRNVRLLGGREPVMENLFGVVQSAMGPIYPELVDRAAAITAVAVGEEL 354 Query: 357 RFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F +TL G + D G G + L G+ AF+L+DT+G P+D+ ++ +GL + Sbjct: 355 AFLETLRTGTTIFDVAVGKAKSTGAAQ-LAGEEAFQLHDTYGFPIDLTLEMAAEQGLT-V 412 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGY-DLLRGSKFMKE 471 D F + ++ QR A+A G + ++ + + G T F GY +L R Sbjct: 413 DEPGFRRLMDRQRELAKADRASRRIGNVDLSVFRPILARSGPTSFTGYTELTR------- 465 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 T V +V A G V A G+ V VV D TPFYAE+GGQ D Sbjct: 466 -------------TATVVGLVSAATGLG--VPAAGEGEDVGVVIDSTPFYAESGGQEADL 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + DG ++I DVQK + +H V RG +R + +T+D RR +S +H+ATH Sbjct: 511 GRFVFDGGEVEIIDVQKPIPDLVLHRGKVVRGEIRLGAEVEVTVDADRRRAVSRSHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H A LG +Q GS +P LRFD I +A L +ED VN++ ++L V Sbjct: 571 LVHTAFRRALGESATQAGSLNSPGRLRFDFHALGSIPAAVLADVEDEVNEVALRDLDVTA 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + ++++A GA AL G KY +RVRVV V G +S LCGGTHV+ + ++ + ++ Sbjct: 631 FVTSQDEARRIGAMALFGEKYGERVRVVDV-----GDYSRELCGGTHVARSAQLGAVKLL 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--K 769 SESSI AG RR+E + G A +L + + L+ LKV + RV +I R + Sbjct: 686 SESSISAGTRRVEGLVGLDAFRYLAREHLLVSQLSGLLKVRADELPDRVSDIVTRLRDAE 745 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE-----LKSVMDALQKKIQSGI 824 +L + + L + DV ++ + +E + K V+D + I Sbjct: 746 RELERVRGEAVLAGAAGLANSAVDVGGVALVAAEAPNGTSPDDLRKLVLDVRGRLIDRPA 805 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 I+ + ++A +++ TE R A DL + ++ L GG GGG+P +AQ GG + Sbjct: 806 IVAAASAGGERAFLVVATTEGSRGRGLKAGDLVKAASAEL-GGSGGGKPDVAQGGGSDIT 864 Query: 884 KADQAIAGV 892 +A+A V Sbjct: 865 GVGRALAKV 873 >gi|260171843|ref|ZP_05758255.1| alanyl-tRNA synthetase [Bacteroides sp. D2] gi|315920155|ref|ZP_07916395.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694030|gb|EFS30865.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 872 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 344/923 (37%), Positives = 507/923 (54%), Gaps = 88/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G YQ Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYQR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEYLYATVFEGSPEEGLSRDDEAASYWEQF--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPEL+ K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQAFMYKLLPVLIDNMGEAYPELVAQKT 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD + GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEESFLRTLETGIRLLDKTMEDTKASGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL + ++I FN+ +++Q+ RAR ++ + +G W LKE G T+F+GY Sbjct: 418 LILRENEMT-VNIDEFNEEMQQQKQRAR-NAAAIETGD----WIILKE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDYTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDAALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRKVEHIVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 + N+P+ R + E+A GA AL G KY D+VRV+ S CGGTHV Sbjct: 617 ARVRANIPLKEYRNIPIEEAKELGAIALFGEKYGDKVRVIQFG------SSIEFCGGTHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL-ASFLKVSQGNVVG 758 ++TG I ++ I+SESS+ AG+RRIEA TG R L + L L A F + Sbjct: 671 AATGNIGMVKIMSESSVAAGVRRIEAYTGARVEELLDTVQDTLSDLKALFNNAPDLGIAI 730 Query: 759 R--------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 R +++ E++ K + K +L N++++ H I V F + + +EV +K Sbjct: 731 RKYLDENAGLKKQVEDFMKEKEAALKERLLKNIQEI--HGIKVVKFCAPLPAEV----VK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G K + ++++++L+ A +L + +AK++ GGGG Sbjct: 785 NIAFQLRGEITENLFFVAGSIDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + A+ V Sbjct: 844 GQPHFATAGGKNTDGLPAAVEKV 866 >gi|15612227|ref|NP_223880.1| alanyl-tRNA synthetase [Helicobacter pylori J99] gi|6707753|sp|Q9ZJY5|SYA_HELPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|4155760|gb|AAD06738.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99] Length = 847 Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust. Identities = 334/884 (37%), Positives = 495/884 (55%), Gaps = 69/884 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FFQ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG +P + Q Sbjct: 3 IRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++TG+ Y + RV+ DH R+ +FL+A + EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTGLDYASEFQPSFRVVADHARAVAFLLAQEVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNVHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L+HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFENC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477 ++EQ R++A G + + ++ Y +F+GY+ L F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTECLANALGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + P Q+V V+ ++TPFYAE GG +GD G D Sbjct: 473 EANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGTLFKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 NEEAALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS + S LCGG HV +TG I IV ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ ++++LK+ + LK +V+ + ++ E + Q K Sbjct: 680 SGVRRIEAVCGKAFYQLTKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KA 733 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 + + DL KI VN + ++ + D KE+ +D L+ K + ++ + KE + Sbjct: 734 PVSM---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHEK--LLAIVFKKENERI 785 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L +++ + NA A A++L GG GGGR A +GG + Sbjct: 786 TLACGVKNVPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKD 826 >gi|186681072|ref|YP_001864268.1| alanyl-tRNA synthetase [Nostoc punctiforme PCC 73102] gi|205830164|sp|B2J876|SYA_NOSP7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|186463524|gb|ACC79325.1| alanyl-tRNA synthetase [Nostoc punctiforme PCC 73102] Length = 880 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 344/907 (37%), Positives = 519/907 (57%), Gaps = 55/907 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR TFL FF + H++LPS+SL+P DPT++ T +GM+PFK IF GQ P ++ TT Sbjct: 11 NEIRNTFLNFFAQRSHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQRTPEFKRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F + Sbjct: 70 QKCIRT----NDIENVGRTKRHHTFFEMLGNFSFGDYFKEQAIAWGWEISTQVFGFSPQN 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+++D+EAF +W+ G+ +I R+ +DNFW TGPCGPCSEI++D Sbjct: 126 LVVSVFEDDDEAFAIWRDQIGVPVARIKRLGEDDNFWVSGPTGPCGPCSEIYYD-FHPER 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ NNY Sbjct: 185 GDENIDLEDDSRFIEFYNLVFMQYNRDVLGNLTPLQNKNIDTGMGLERMAQILQKVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +IQ + Q+ G+ Y ++ V+ +VI DH+RS +IAD I +N GRGYVL Sbjct: 245 ETDLIFPIIQTAAQIAGIDYHSSDEKTKVSLKVIGDHVRSVVHMIADEIRASNVGRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + + SAYP + Q + I+ L+ E+ F +T Sbjct: 305 RRLIRRVVRHGRLIGISGEFTTQVAESAIALSESAYPNVRQREAAIKAELQREESNFLRT 364 Query: 362 LDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 LDRG LL+ ++ + G +I +G+ AF LYDT+G PL++ Q++ L +D F Sbjct: 365 LDRGEKLLEEIIQEVKQQGSTQI-SGESAFTLYDTYGFPLELTQEVAEENNLT-VDAEGF 422 Query: 419 NQALEEQRSRAR-AH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 +E Q+ R R AH ++ L T + L E T+F+GY Sbjct: 423 EAQMEIQKGRGRDAHETIDL---TVQGSLDKLAEHIQVTEFLGY---------------- 463 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + ++I++AI+ +G EEA +G +V++V D+TPFYAE+GGQ+GD G G Sbjct: 464 -------TQSAATAIIEAILLEGVSQEEAEAGTQVQIVLDKTPFYAESGGQIGDRGYISG 516 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DGI +++ DV+K+++ FVH +ERG LR + ID RR+ NH+ATHLL A Sbjct: 517 DGIVVRVEDVKKESD-FFVHFGRIERGTLRVGDRVTAQIDPACRRRAQANHTATHLLQAA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L I+ +SQ GS ++ D LRFD + +T+ E++ +E+ VN IA+ ++ Sbjct: 576 LKKIVDDGISQAGSLVSFDRLRFDFNCPRALTAEEVQQVEEQVNSWIAEAHAAKVEVLPL 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 +A A GA A+ G KY D VRV+ D S LCGGTHVS+T EI + I+SE+ + Sbjct: 636 AEAKAKGAVAMFGEKYGDEVRVI-----DFPNVSMELCGGTHVSNTAEIGVFKIISEAGV 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRIEA++G +L +D+ +K L+ KV + R+ + E R Q Sbjct: 691 ASGVRRIEAVSGPAILDYLNLRDKVVKDLSDRFKVKPEELPDRITSLQSELRNSQKELET 750 Query: 777 RKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K+QL + + + D + + VD + LK+ + L +KI +G ++L + Sbjct: 751 LKVQLAIAKSDSLLQTAETVGDHKIIVAQLENVDPESLKTAAERLLQKIGNGAVVLGSVP 810 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 + K S++ + ++ + A AK+ GGGGGGRP++AQ+GG + +K A+ Sbjct: 811 EADKVSIVAAFSPEVNKKGLQAGKFVGAIAKIC-GGGGGGRPNLAQAGGRDASKLPDALG 869 Query: 891 GVASFLK 897 S LK Sbjct: 870 QAESDLK 876 >gi|29349403|ref|NP_812906.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482] gi|41018213|sp|Q8A0M6|SYA_BACTN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|29341312|gb|AAO79100.1| alanyl-tRNA synthetase [Bacteroides thetaiotaomicron VPI-5482] Length = 872 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 345/923 (37%), Positives = 506/923 (54%), Gaps = 88/923 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRDSFKNFFESKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ Y LG + M LLP L MG AYPELI K Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYGYTFLGQKQSFMYKLLPVLIDNMGDAYPELIAQKG 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 LIE+ ++ E+E F +TL+ G+ LLD G GK EI +G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEI-SGKDAFTLYDTFGFPLDLTE 417 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL G+ ++I FN +++Q+ RAR ++ + +G W +L+E G T+F+GY Sbjct: 418 LILRENGMT-VNIEEFNAEMQQQKQRAR-NAAAIETGD----WVTLRE--GTTEFVGY-- 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D T +SI+ + I Q+ + + ++V D TPF Sbjct: 468 --------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLDCTPF 499 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D R Sbjct: 500 YAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVDTDKR 556 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E VN Sbjct: 557 AACAANHSATHLLDSALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVEHLVN 616 Query: 641 DIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+P+ R + E+A GA AL G KY +RVRV+ S CGG HV Sbjct: 617 AKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFG------SSIEFCGGIHV 670 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG---NV 756 ++TG I ++ I+SESS+ AG+RRIEA TG R L + + L S + + Sbjct: 671 AATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAPDLGIAI 730 Query: 757 VGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 +EE E+Y K + K +L N++++ H I + F + + +EV +K Sbjct: 731 RKYIEENAGLKKQVEDYMKEKEASLKERLLKNIQEI--HGIKVIKFCAPLPAEV----VK 784 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGG 869 ++ L+ +I + + G K + ++++++L+ A +L + +AK++ GGGG Sbjct: 785 NIAFQLRGEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-QGGGG 843 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+PH A +GG N + + AI V Sbjct: 844 GQPHFATAGGKNTDGLNAAIEKV 866 >gi|224542880|ref|ZP_03683419.1| hypothetical protein CATMIT_02074 [Catenibacterium mitsuokai DSM 15897] gi|224524210|gb|EEF93315.1| hypothetical protein CATMIT_02074 [Catenibacterium mitsuokai DSM 15897] Length = 868 Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust. Identities = 341/911 (37%), Positives = 506/911 (55%), Gaps = 74/911 (8%) Query: 8 RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKC 67 R FLE+F+K GH + PS+SLIP +DPTL++ N+G+ K F G EKP +T QK Sbjct: 10 RALFLEYFKKQGHMVEPSASLIPHDDPTLLWINAGVAALKKYFDGTEKPACNRITNAQKS 69 Query: 68 VRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRL 125 +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT E D+ +L Sbjct: 70 IRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKTEAIHFAWEFLTGEEWLAFDKDKL 125 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YITVY +DE+A+ +W K G+ I++ T DNFW + GP GP SEIF+D+GE Sbjct: 126 YITVYTDDEDAYNVWTKECGVDPSHILK--TADNFWEIG-AGPGGPDSEIFYDRGEKYDP 182 Query: 186 GLPGS-----SEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMATVL 237 G E +RY+EIWN+VF QF+ ++++ LP +IDTGMGLER+ +++ Sbjct: 183 DHIGERLFFEEMENDRYVEIWNIVFSQFDCDPTIDRKDYKELPHKNIDTGMGLERITSII 242 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 QE N+D DLF +I A+E++ +KY + + +RVI DH+R+ +F ++DG + GR Sbjct: 243 QEGETNFDTDLFLPIIHATEELADVKYAEDKMA-YRVIADHIRTVTFALSDGAMFDRAGR 301 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ Y + +G +P + L+ + M Y L + ++E ++ E+ Sbjct: 302 GYVLRRILRRAVRYGKNIGIDKPFLYTLVDVVVDNMKEFYDYLPEKAEFVKEAVKKEEVA 361 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F KTL +G + V++H D++++G AF LYDT+G PL++ +I G +D Sbjct: 362 FHKTLSQGEKKIKDVIAH-SDDKMIDGSTAFMLYDTYGFPLELTIEIAEESGFT-VDSEG 419 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F ++ Q+ RARA S ++KI L + + F+ YD Sbjct: 420 FQVEMKAQQDRARAARGERESMASQKI--DLMDFTTPSTFV-YD---------------- 460 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 T + V + + GE V+E + E++ + T FYAE GGQ DTG A D Sbjct: 461 -------TAPCKTTVIGLFKDGEKVDELTD--EGEIIVETTNFYAEMGGQCADTGSAHSD 511 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++T+V K G +H+ + G + ++ LT+D R + NH+ATHLL AL Sbjct: 512 QFDAEVTNVLKAPNGQHLHYIKLTSGSVHVGDTVELTVDTARRTLIENNHTATHLLDAAL 571 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHV Q GS + + LRFD TH +T EL ++ED VN+ I + + V + M +E Sbjct: 572 KNVLGSHVGQAGSYLDENRLRFDFTHPSKMTKEELTAVEDMVNEYIFKGVDVDVKEMPKE 631 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +AI++GA AL KY D VRVV V S LCGGTHVS+T +I L I E+S+ Sbjct: 632 EAISAGATALFDEKYGDVVRVVRVG-----DFSVELCGGTHVSNTAKIGLFKIEMETSVG 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVE-----------EIWE 765 +G+RRIEA+T RA L +E L+ + + LK + N +V + E EI Sbjct: 687 SGVRRIEAVTNVRAYKALRKSEETLEEVGTVLKANDLNKIVEKAESTMTTLNAMKKEIET 746 Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 KL + AK + VE+++ K +H+ E D+ K + + +++SGI+ Sbjct: 747 LTSKLNALEAKNQAS-QVEEVNGVKF----LYTHV--EKDNAAAKQMAFDFRDQLESGIV 799 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 ++ + E K S + +T+DL + + A L + +VL G GGG+P AQ G P +K Sbjct: 800 VVTS-TFEGKNSYFVGITKDLTNTYKAGVLVKAMNEVL-DGRGGGKPDFAQGGAPTLDKI 857 Query: 886 DQAIAGVASFL 896 D+AI V S L Sbjct: 858 DEAITAVKSKL 868 >gi|294672801|ref|YP_003573417.1| alanine--tRNA ligase [Prevotella ruminicola 23] gi|294472795|gb|ADE82184.1| alanine--tRNA ligase [Prevotella ruminicola 23] Length = 887 Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust. Identities = 336/935 (35%), Positives = 500/935 (53%), Gaps = 93/935 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +F +FF+ H ++PS+ ++ +DPTLMFTN+GM +K+I G P + Sbjct: 3 ANEIRDSFKKFFESKQHAIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTRDPEPRRRAD 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI +AW+ L L+ Sbjct: 63 TQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDMAWEYLVDVLKLNPE 122 Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 LY+TV++ D+EA K W K + D II +DNFW M +TGPCGPCSEI Sbjct: 123 DLYVTVFEGSPEENIPRDDEAAKYWAK--HVPEDHIINGNKHDNFWEMGDTGPCGPCSEI 180 Query: 176 FFDQGECIPGGLPGSS------EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 D G + ++ + IEIWN+VFMQF ++ L IDTGMG Sbjct: 181 HVDSRTPEQKAASGKTGRELVNQDDPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGMG 240 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------------EGNNI-VNHRVI 275 ER+ ++Q K +NYD D+F+ +I+A +Q+TG+KY E ++I V RV Sbjct: 241 FERLVRMMQGKHSNYDTDVFQPIIKAEQQITGLKYFTFEEETESPISKEQDDINVAMRVC 300 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMG 334 DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L + + L+P L EMG Sbjct: 301 ADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNQKDGFLYKLVPTLVAEMG 360 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLY 391 A+PEL + L+ + ++ E+E F +TL++G+ +L+ ++ L GK E L+G AF+L+ Sbjct: 361 GAFPELEAQQQLVTKVIKEEEESFLRTLEKGIGMLNDAMNTLKAEGKTE-LDGVQAFRLF 419 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 DT+G PLD+ + ++C ++ FN +++Q+ RAR + W L Sbjct: 420 DTYGFPLDLTE-LICRENGFTVNEEQFNVEMQKQKDRARN-----AAAVENSDWVELAA- 472 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 G QF+GYD + RKV +K + Sbjct: 473 -GEQQFVGYDYTEYECHIIRYRKVTQKK----------------------------NEFY 503 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 E+V D TPFY E GGQ+GD G + + + I D K+ G VH IV++ Sbjct: 504 ELVLDNTPFYGEMGGQVGDCGVLVNEAETINIIDT-KRENGQSVH--IVKQLPKDPAAQF 560 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + +D R + NH+ATHLL +AL ILG HV Q GS ++PD LRFD +H + +T + Sbjct: 561 MACVDTDKRNASAANHTATHLLDYALKQILGDHVEQKGSFVSPDTLRFDFSHFEKVTDEQ 620 Query: 632 LKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 L+ +E VND+I Q++ + R + ++A GA AL G KY D+VRVV S Sbjct: 621 LREVERMVNDMIRQDIHIDEHRDVPFDEAKKLGAIALFGEKYGDKVRVVRFG------PS 674 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL- 749 CGG H SSTG I I+SESS+ AGIRRIEA TGQ L ++ LK++ +F Sbjct: 675 CEFCGGIHASSTGRIGFFKIISESSVAAGIRRIEAKTGQECEELLYQTEDILKAVKAFFN 734 Query: 750 --KVSQGNVVGRVEE---IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804 K QG + +EE + +E Q +R + V+ ++ V +S ++ + Sbjct: 735 NAKDLQGVIKKYIEEHDSMKKEIEAFQAQAVERAAKQLVD--KAREVNGVKVVSAVLP-M 791 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKV 862 + K + ++ ++ ++ ++G K + I++++D++ NA + R +AK+ Sbjct: 792 NPAAAKDLAFKIRAAVEGSLLCVLGTHDNNKPQLSIMMSDDMVSDHGLNAGQMVREAAKL 851 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + GGGGG+PH AQ+GG N + A+ V K Sbjct: 852 I-QGGGGGQPHFAQAGGKNADGLSAAVDKVLELAK 885 >gi|315503215|ref|YP_004082102.1| alanyl-tRNA synthetase [Micromonospora sp. L5] gi|315409834|gb|ADU07951.1| alanyl-tRNA synthetase [Micromonospora sp. L5] Length = 893 Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust. Identities = 350/935 (37%), Positives = 514/935 (54%), Gaps = 87/935 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I+ FL F+ NGH ++PS+ L +DP L+F N+GMV F F GQ+ P Y T Sbjct: 2 KTAEIKRRFLAHFEANGHTVVPSAPLPAISDPNLLFINAGMVQFVPYFLGQQTPPYARAT 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKC+R D+D VG+T+RH TFF+M GNFSFG YFK AI LAWDL TK Sbjct: 62 SVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKSGAIPLAWDLATKPVEAGG 117 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F LD R++ TVY +D+EA+ +W+ +G+ A++I+R DNFWSM GPCGPCSE+++ Sbjct: 118 FGLDPERIWATVYLDDDEAYDIWRA-TGVPAERIVRRGKADNFWSMGIPGPCGPCSELYY 176 Query: 178 DQGECIPGGLPGSSEEGE-RYIEIWNLVFMQFEQQNK--QERFI----LPKMSIDTGMGL 230 D+G G G E E RY+E WNLVFMQFE+ +E F LP +IDTGMGL Sbjct: 177 DRGPAY--GREGGPEVDEDRYLEFWNLVFMQFERGPGVGKEDFPILGDLPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNNIVNHRVIVDHLR 280 ERMA++LQ N Y+ID K ++ + ++TG +Y + V RVI DH+R Sbjct: 235 ERMASLLQGVDNLYEIDEVKPILDRAAELTGKRYGVHSGHAANESHPDDVRLRVIADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 +S LI DG+ P+NEGRGYVLRRIMRRA+ RLLGY + + LLP M +YPEL Sbjct: 295 TSLMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGYQDRALPELLPVARDCMAPSYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLP 397 + I + +E++ F TL G +LD ++ GK L+GD AF+L+DT+G P Sbjct: 355 AEDFGRISQYAYAEEDAFLATLRAGTTILDTAIAETKSAGK-AALSGDKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQ 456 +D+ +I +GL +D F + + +QRSRA+A + +G T+ + S+ + G + Sbjct: 414 IDLTLEIAAEQGLQ-VDAEGFRRLMADQRSRAKADAQARKTGHTDVSAYRSVLDGGGPVE 472 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 F GY ++ +E R V+A++ G V AV G +E+V D Sbjct: 473 FTGY-----TELSRESR------------------VRALLSGGAAVSAAVEGDTIELVLD 509 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 TPFYAE GGQ D G G ++++ DVQ+ G+ VH A V RG +R+ + ID Sbjct: 510 TTPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRAKVVRGEVRSGETGYAEID 569 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 RR +S +H+ATHL+H + LG +Q GS P LRFD + + L +E Sbjct: 570 VSRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLHDVE 629 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+++ +L V + ++E+A GA AL G KY +RVRVV V G ++ LCGG Sbjct: 630 QQVNEVLLADLEVHAFVTSQEEARRIGAMALFGEKYGERVRVVEV-----GDYARELCGG 684 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV+ + ++ L+ I+SE+S+ +G+RRIEA+ G A L + + LA +V V Sbjct: 685 THVARSAQLGLVKILSEASVGSGVRRIEALVGMDAFGFLAREHLLVSRLAELFRVPGEQV 744 Query: 757 VGRVEEIWEEYR----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812 RVE+ + R +L+ + A+ L + K DV ++++ +E + Sbjct: 745 ADRVEQTVTQLRDAEKELEKLRAQLVLGGAGALAAQAK--DVRGVAYVGTEAPEGAAAND 802 Query: 813 MDALQKKIQSGI------IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 + L ++I+ I ++ V KAS+++ V + R +A DL + + Sbjct: 803 VRTLAQEIRGRIDAARPAVVAVAARANGKASLVVAVNQAARGRNLSAKDLVKAAFS---- 858 Query: 866 GGGGGRPHMAQSGGPNGNKA-------DQAIAGVA 893 G GGG +AQ GG +A ++A+AG A Sbjct: 859 GRGGGSDDLAQGGGLPATEAPNLLVTVERAVAGTA 893 >gi|325853118|ref|ZP_08171267.1| alanine--tRNA ligase [Prevotella denticola CRIS 18C-A] gi|325484492|gb|EGC87413.1| alanine--tRNA ligase [Prevotella denticola CRIS 18C-A] Length = 888 Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust. Identities = 338/940 (35%), Positives = 510/940 (54%), Gaps = 98/940 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L+FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYLKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE AI A++ L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGRDAALSHHTMFEMLGNWSFGDYFKEGAIDYAYEYLVDVL 120 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD + LY+TV++ DE EA W+K + I+ +DNFW M +TGPCG Sbjct: 121 HLDPKDLYVTVFEGDEAEGISRDDEASGYWEK--HFPKNHIVNGNKHDNFWEMGDTGPCG 178 Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PCSEI D + E +PG +++ + IEIWN+VFMQF ++ L IDT Sbjct: 179 PCSEIHIDFRSEEEKAKVPGEELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLKMHVIDT 238 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVN 271 GMG ER+ ++Q K +NYD D+F +I E+++G KY EG N + Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPVIAEIERLSGRKYNHTFPEGPNGEGVNEEQKVDIA 298 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG E M LL L Sbjct: 299 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLNVLV 358 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAF 388 EMG+AYPEL + LI ++ E++ F +TLD+G+ LL+G + L E L+G AF Sbjct: 359 HEMGTAYPELAAQRELIGRVMKEEEDSFLRTLDKGITLLNGAMDELKAHEKKELDGKEAF 418 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 +L+DT+G PLD+ + ++C +D FN+ + +Q++RAR ++ + +G W L Sbjct: 419 RLFDTYGFPLDLTE-LICGENGYTVDEKQFNEEMAQQKARARNAAV-VENGD----WEVL 472 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 +E G +F+GYD + RKV +K Sbjct: 473 RE--GEQEFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 504 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 E+V D TPFY E GGQ+GD G + + + + D K+ +H IV++ + Sbjct: 505 --YELVLDHTPFYGEMGGQVGDQGVLVSEDETVNVIDT-KRENNQSIH--IVKQLPKNVK 559 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + +D + R + NH+ATHLL +AL +LG H Q GS ++PD LRFDV+H + IT Sbjct: 560 ADFMACVDTEKRDASAANHTATHLLDYALKQVLGEHAEQKGSYVSPDTLRFDVSHFQKIT 619 Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687 EL+ +E VN++I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 DEELRQVEKIVNEMIRKDYPLDEHRDTPLEEAKKMGAVALFGEKYGDKVRVVRFG----- 674 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLAS 747 S CGG H +STG I IV ESS+ AG+RRIEA+TG+ + + ++ L+ L + Sbjct: 675 -PSCEFCGGIHATSTGRIGFFKIVGESSVAAGVRRIEAMTGETCENAIYVLEDTLRDLKA 733 Query: 748 FLKVSQG--NVVGR-VEEI------WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798 ++ V+ R VEE E++R + A + L VE + D + Sbjct: 734 MFNNAKDLKAVLTRFVEENDAMKREVEKFRAQAVDRAAKTLAERVE------MVDGVHVI 787 Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLA 856 + VD K ++ +++ + ++ ++G + + + I++++D++ NA + Sbjct: 788 KAVLPVDPASAKDIVFKVRQSLPEKLVCILGSVYDNRPQLSIMLSDDMVKEHGLNAGKII 847 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 R +AK++ GGGGG+PH AQ+GG + + A+ V + Sbjct: 848 REAAKLI-KGGGGGQPHYAQAGGKDADGVSAAVDKVMELI 886 >gi|182439827|ref|YP_001827546.1| alanyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780491|ref|ZP_08239756.1| alanyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1] gi|205830221|sp|B1W3I1|SYA_STRGG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|178468343|dbj|BAG22863.1| putative alanyl-tRNA synthetase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660824|gb|EGE45670.1| alanyl-tRNA synthetase [Streptomyces cf. griseus XylebKG-1] Length = 889 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 349/923 (37%), Positives = 511/923 (55%), Gaps = 80/923 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH +PS+SLI +DPTL+ +GMVPFK F G+ KP VT+V Sbjct: 4 AEIRRRWLSFFEERGHTAVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AIQLAW+ LT + Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD +L+ITVY +D+EA ++W+ G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LDPEKLWITVYLDDDEAEQIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ + +E F LP +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ D + ++ + ++TG++Y E + V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVRYGAENSTDVSLRVVADHIRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T ++ L+ + MG YPELI + IE Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIETVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F K L G +L+ ++ ++L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKALKGGTNILETAVTETKAAGGQVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR +A+A + +G + + + + GAT+F GY L G Sbjct: 418 LS-VDEDGFRRLMQEQRDKAKADARAKKTGHADLSAYREVADTAGATEFTGYASLAGE-- 474 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S+IV +V G A G +VEVV D+TPFYAE GGQL Sbjct: 475 --------------------STIVGLLVD-GVPSPAATEGDEVEVVLDRTPFYAEGGGQL 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 DTG + G +++ DVQK G+ VH +V+ G + + +ID RR ++ H Sbjct: 514 ADTGRIRLDTGAVIEVRDVQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS +P RFD + L +E +N+++++ L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLSREL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEKI 741 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKI-----------ADVNFMSHIISEV----DSKELKSV 812 ++ + + +E K+ DV + + +V + +L+ + Sbjct: 742 AG--MLGKLKDAEKEIEKFRAEKVLAAAAGLVESAKDVRGTALVTGQVPDGTSADDLRKL 799 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGG 869 + ++ +IQ G +V + L V+ + R A DL R +AK L GGGGG Sbjct: 800 VLDVRGRIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGG 858 Query: 870 GRPHMAQSGGPNGNKADQAIAGV 892 G+P +AQ GG N A+A V Sbjct: 859 GKPDVAQGGGTNPAAIGDAVAAV 881 >gi|312870442|ref|ZP_07730562.1| alanine--tRNA ligase [Lactobacillus oris PB013-T2-3] gi|311093999|gb|EFQ52323.1| alanine--tRNA ligase [Lactobacillus oris PB013-T2-3] Length = 886 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 331/927 (35%), Positives = 511/927 (55%), Gaps = 94/927 (10%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FFQ++GH+++PS SL+P NDPTL++ NSG+ K F G+ P +T+ Sbjct: 10 AQVRRMYLDFFQQHGHKVMPSQSLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMTSS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK I AW+LLT + F D Sbjct: 70 QKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDDWFGFDP 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 RLYIT Y +D +A+ W+++ G++ D +I DNFW + + GP GP +E+F+D+G Sbjct: 126 ARLYITYYPKDHDAYNKWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEVFYDRGQE 181 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E ERY+EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 182 FNNLAEDDPESYPGG--ENERYLEIWNIVFSQFNHTPENTYEPLPHKNIDTGMGLERVVS 239 Query: 236 VLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292 + + N++ DLF +I Q + G +Y + V ++I DH+R+ +F I DG LP Sbjct: 240 IFENAPTNFETDLFMPIIKQVAALSAGKQYGADKADDVQFKIIADHIRTITFAIGDGALP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RRA+ + LG EP + L+P + M YPE++Q I ++ Sbjct: 300 SNMGRGYVIRRLLRRAVVAGKKLGIDEPFLAQLVPTVGKIMEDYYPEVLQNADYIASVIK 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE++RF TL+ GL LL+ V++ ++ ++G AFKLYDT+G P+++ ++ GL Sbjct: 360 SEEDRFSATLNGGLNLLNSVIADAKQNCSNQIDGRTAFKLYDTYGFPIELTKEYAADEGL 419 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A+ EQ++RAR A + G G +W KE ++++GY Sbjct: 420 T-VDQKGFEAAMTEQQNRARNARDMDNGMGVQTDLWTDFKED---SKYVGY--------- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQL 528 DLT + ++ + G+ + A S Q +EV+FD TPFYAE GGQ+ Sbjct: 467 ------------TDLTVDGAKVI-GLAHDGQQADSAAPSDQNIEVIFDTTPFYAEMGGQV 513 Query: 529 GDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTIDYQ 578 DTG I + G ++ ++ DVQ HA ++ + R E++ L +D Sbjct: 514 ADTGDIIDNYGEKVGRVVDVQ---------HAPNQQNLHRVELTSPIKKGARYKLVVDRA 564 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 ++ NH+ATHLL AL +LG H Q GS + LRFD H +T+ +L ++E Sbjct: 565 RHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTAKDLAAVEAM 624 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 VN+ I + +PV T + + A GA AL KY D+VRVV + G +++ CGG H Sbjct: 625 VNEQIFKEIPVTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGDH 679 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ----- 753 V +T E+ L IVSE + AG+RRIEA+T A L ++ L+ +A LK +Q Sbjct: 680 VKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAYDFLQKRNAMLEEVAGDLKAAQIKEVP 739 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKS 811 V EE+ + ++++ + AK Q NV D + ++ + +L+ Sbjct: 740 HQVANLQEELKQANKQVEALQAKIAAQQANNVFD-DVQETKKGKLIAAEVKVAGMGQLRQ 798 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870 + D+ + K S +++L G + + KA++L+ V++ + A DL + A + GGGGG Sbjct: 799 LADSWRAKGLSDVLVL-GTANDGKANLLVAVSDGKVKAGLKAGDLIKAIASAI-KGGGGG 856 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897 RP++AQ+GG + AG+ + LK Sbjct: 857 RPNLAQAGGKDP-------AGIPAALK 876 >gi|239986424|ref|ZP_04707088.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 11379] gi|291443371|ref|ZP_06582761.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998] gi|291346318|gb|EFE73222.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998] Length = 889 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 350/927 (37%), Positives = 515/927 (55%), Gaps = 76/927 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH +PS+SLI +DPTL+ +GMVPFK F G+ KP VT+V Sbjct: 4 AEIRRRWLSFFEERGHTAVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AIQLAW+ LT + Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD +L+ITVY +D+EA ++W+ G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LDPEKLWITVYLDDDEAEQIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ + +E F LP +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ D + ++ + ++TG++Y E V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVRYGAENGTDVSLRVVADHIRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG T ++ L+ + MG YPELI + IE Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIETVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F K L G +L+ ++ ++L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKALKGGTNILETAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR +A+A + +G + + + + GAT+F GY L G Sbjct: 418 LS-VDEDGFRRLMQEQRDKAKADARAKKTGHADLSAYREVADTAGATEFTGYTSLAGE-- 474 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S+IV +V G A G +VEVV D+TPFYAE GGQL Sbjct: 475 --------------------STIVGLLVD-GVPSPAATEGDEVEVVLDRTPFYAEGGGQL 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 DTG + G +++ DVQK G+ VH +V+ G + + +ID RR ++ H Sbjct: 514 ADTGRIRLDTGAVIEVRDVQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS +P RFD + L +E +N+++++ L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLSREL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVQAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEKI 741 Query: 768 RKL--QLIHAKRKLQ-------LNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMD 814 + +L A+++++ L DV ++ + +V + +L+ ++ Sbjct: 742 AGMLGKLKDAEKEIEKFRAEKVLAAAAGLADSAKDVRGVALVTGQVPDGTSADDLRKLVL 801 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGR 871 ++ +IQ G +V + L V+ + R A DL R +AK L GGGGGG+ Sbjct: 802 DVRGRIQGGRPAVVALFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGGGK 860 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P +AQ GG N A+A V + + Sbjct: 861 PDVAQGGGTNPAAIGDAVAAVERLVSE 887 >gi|257413376|ref|ZP_04742849.2| alanine--tRNA ligase [Roseburia intestinalis L1-82] gi|257203713|gb|EEV01998.1| alanine--tRNA ligase [Roseburia intestinalis L1-82] Length = 778 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 310/743 (41%), Positives = 440/743 (59%), Gaps = 48/743 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +LEFF+ GH + S SL+P ND +L+ N+GM P K FTGQE P + VTT Sbjct: 13 NELRRMYLEFFESKGHLAMKSFSLVPHNDNSLLLINAGMAPLKPYFTGQEIPPRRRVTTC 72 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T RH TFFEMLGNFSFG YFK AI +W+ LT+ L++ R Sbjct: 73 QKCIRTG----DIENVGKTARHLTFFEMLGNFSFGDYFKHEAIHWSWEFLTQVLGLEEDR 128 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTN------DNFWSMAETGPCGPCSEIFFD 178 LY ++Y ED+EAF++W K G+ A+KI R + DNFW GPCGPCSEI++D Sbjct: 129 LYPSIYGEDDEAFEIWNKEVGVPAEKITRFYRDPETGECDNFWEHG-AGPCGPCSEIYYD 187 Query: 179 QGECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +GE G P + +R++E+WN VF QFE K L + +IDTGMGLER+A V Sbjct: 188 RGEKYGCGKPDCKVGCDCDRFMEVWNNVFTQFEGDGKGGYTELAQKNIDTGMGLERLAVV 247 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294 +Q+ + +DID K + +++G KY+ + + V+ R+I DH+RS++F+I+DGI+P+N Sbjct: 248 MQDVDSVFDIDTMKAIRDKVCEMSGKKYQVDALDDVSIRLITDHIRSATFMISDGIMPSN 307 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA + R+LG M L + E YPEL + K I + L E Sbjct: 308 EGRGYVLRRIIRRAARHGRMLGIDGIFMAKLAATVINESKDGYPELEEKKDFIFKVLSQE 367 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+FGKT+D+GL +L + + D ++L+G+ AFKLYDT+G P+D+ Q+IL +G + Sbjct: 368 EEKFGKTIDQGLSILSDMEKQMEADGVKVLSGENAFKLYDTYGFPMDLTQEILEEKGFS- 426 Query: 413 IDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E QR+ AR A + G E ++ S+ T+F+GYD L Sbjct: 427 VDEEGFKKAMEVQRTTARKARKVTNYMGADETVYESVDPSV-TTEFVGYDSLN------- 478 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 C+ S + + + EIVE G+ V+ +QTPFYA GGQ GD Sbjct: 479 -----CK-----------SKITVLTTETEIVEALSDGEVGTVIVEQTPFYATMGGQQGDK 522 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G Q+ D K G H + G+++T L++D R ++ NHSATH Sbjct: 523 GIIRTAAGEFQVEDTIKLLGGKVGHVGKMISGMMKTGDEADLSVDAALRAKICKNHSATH 582 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG+HV Q GS + RFD +H +T EL+ +E VND IA+ +PV T Sbjct: 583 LLQKALREVLGTHVEQAGSYQDGERTRFDFSHFAAMTPEELEKVEKIVNDKIAEAIPVRT 642 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 +M ++A +GA AL G KY + VRVVS+ G S CGGTHV +T EI I+ Sbjct: 643 DVMTVDEAKKTGAMALFGEKYGETVRVVSM-----GDFSKEFCGGTHVKNTSEIAAFKII 697 Query: 712 SESSIRAGIRRIEAITGQRARSH 734 SE+ + AG+RRIEA+TG ++ Sbjct: 698 SENGVAAGVRRIEALTGDNVFAY 720 >gi|108563608|ref|YP_627924.1| alanyl-tRNA synthetase [Helicobacter pylori HPAG1] gi|122386244|sp|Q1CS22|SYA_HELPH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|107837381|gb|ABF85250.1| alanyl-tRNA synthetase [Helicobacter pylori HPAG1] Length = 847 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 341/881 (38%), Positives = 492/881 (55%), Gaps = 63/881 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FFQ GH + PS L+P ND TL+FTN+GMV FK+IFTG P T+ Q Sbjct: 3 IRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPHPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYTSEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 ++EQ R++A G + FS + Y +F+GY+ C Sbjct: 416 MQEQVKRSKAS----WKGKQDNADFSAILNAYAPNEFVGYETTE------------C--- 456 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 P S K I+ EA Q+V V+ ++TPFYAE GG +GD G D Sbjct: 457 PAKALGFFDSDFKEII-------EANPNQEVWVLLEKTPFYAEGGGAIGDRGALFKDNEE 509 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 I K G+ +++ + + + + D R +++ +HSATHLL AL + Sbjct: 510 AAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREV 567 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 LGSHVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A Sbjct: 568 LGSHVSQAGSLVESKRLRFDFSHPKVLNDEELEKVEDLVNAQIFKHLNSHVEHMPLNQAK 627 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 GA AL G KY + VRVVS + S LCGG HV +TG I IV ES + +G+ Sbjct: 628 DKGALALFGEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVSSGV 682 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+ G+ + ++LK+ + LK +V+ + ++ E + Q K Sbjct: 683 RRIEAVCGKAFYQLAKEESKELKNAKTLLK--NNDVIAGINKLKESVKNSQ------KAP 734 Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 ++V DL KI VN + ++ + D KE+ +D L+ K + + M+ KE + L Sbjct: 735 VSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMV--FKKENERITLA 788 Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + N A A++L GG GGGR A +GG + Sbjct: 789 CGVKNAPIKANV--WANEVAQIL-GGKGGGRDDFASAGGKD 826 >gi|308183349|ref|YP_003927476.1| alanyl-tRNA synthetase [Helicobacter pylori PeCan4] gi|308065534|gb|ADO07426.1| alanyl-tRNA synthetase [Helicobacter pylori PeCan4] Length = 847 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 316/837 (37%), Positives = 469/837 (56%), Gaps = 64/837 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG +P + Q Sbjct: 3 IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 R I+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RHILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477 ++EQ R++A G + + ++ Y F+GY+ + F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECCAKALGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 P Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 473 DAKP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGVLLKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 I K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 NEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS +++ + LCGG HV +TG I IV ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ ++++LK+ + LK +V+ + ++ E + Q Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ------ 731 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K ++V DL KI VN + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 732 KAPVSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHEKLLAMVFKKENER 784 >gi|312887198|ref|ZP_07746802.1| alanyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603] gi|311300510|gb|EFQ77575.1| alanyl-tRNA synthetase [Mucilaginibacter paludis DSM 18603] Length = 927 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 344/974 (35%), Positives = 522/974 (53%), Gaps = 138/974 (14%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF GH ++PS+ ++ NDPTLMFTN+GM FK+IF G+E + V Q+ Sbjct: 6 IRQAFLDFFASKGHTIVPSAPIVVKNDPTLMFTNAGMNQFKSIFLGEEPVKFPRVADTQR 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG + HHT FEMLGN+SFG YFK+ AI +W+LLT+ + LD+ RLY Sbjct: 66 CLRVSGKHNDLEEVGIDSYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEIYKLDKSRLY 125 Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T ++ DE E +LW++ ++ D I+ DNFW M ETGPCGPCSEI +D Sbjct: 126 VTYFEGDEKEGLAADTETLELWREF--VADDHILPGNKKDNFWEMGETGPCGPCSEIHYD 183 Query: 179 ----------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 G + G+ S +EIWN VFMQF + LP +DTGM Sbjct: 184 GRTDAERAQIDGATLVNGVDDS------VMEIWNDVFMQFNRLKDGSLQPLPAKHVDTGM 237 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNI---------- 269 G ER+ ++Q KT+NYD D+F+ LIQ + +G+ Y EG+++ Sbjct: 238 GFERLVRIMQGKTSNYDTDVFQPLIQFIAEKSGIVYGPHPALSKGEGSDLQASEAHALKV 297 Query: 270 -------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLL 315 V RV+ DH+R+ SF IADG LP+N GYV+RRI+RRA+ Y+ + L Sbjct: 298 LSFGEDLVEAKTDVAMRVMADHIRAISFAIADGQLPSNNKAGYVIRRILRRAVRYSYQYL 357 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD----- 370 + EP + L+P L + + EL+ K +++ + E+ F +TLDRG+ + Sbjct: 358 NFKEPFLNQLVPILAQQFVGVFTELVNQKDFVQKVVLEEEVAFLRTLDRGINKFEEFIQK 417 Query: 371 -----GVLSHLGKDE--------------ILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++ +L D I+ G+ AF+L DT+G PLD+ + L AR + Sbjct: 418 EAQEIELIKNLANDSSSSLPTAFKDSKTTIIRGNFAFELSDTYGFPLDLTE--LMAREIG 475 Query: 412 -GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D+ + AL +Q+SR+RA + + +G W LKE +F+GY + Sbjct: 476 WTVDVEGYETALAQQKSRSRA-ATAIDTGD----WILLKED-DTVEFVGYTETETIAHVV 529 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + RKV +A ++ ++V D+TPFYAE+GGQ+GD Sbjct: 530 KYRKV----------------------------KAKGKEQYQIVLDKTPFYAESGGQVGD 561 Query: 531 TGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 TG I DG + +TD KK G+ VH V++ + +L +D R+ + NHSA Sbjct: 562 TGELIFPDGEIVPVTDT-KKENGLIVH--FVDQLPEDIDDALTAMVDVDKRKATNNNHSA 618 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LGSHV+Q GS + + LRFD +H +T E+ IE VN+ I +N+ V Sbjct: 619 THLLHAALKEVLGSHVNQKGSLVNNEYLRFDFSHFSKVTDEEIARIEAIVNERIRENILV 678 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 + + +E+AIA GA AL G KY D VRVV+++ + S LCGGTHV STG+I Sbjct: 679 DIQELPKEEAIAMGANALFGEKYGDTVRVVTMDMK----FSIELCGGTHVQSTGQIGFFK 734 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I++ES++ AG+RRIEAITG + Q + ++ L LK + NV VE + +E + Sbjct: 735 IIAESAVAAGVRRIEAITGVAVEQYFNEQGKLIQQLKELLK-NPKNVAKSVEGLLDENSR 793 Query: 770 LQL-----IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 L+ ++ K V I +NF++ + ++ +K++ +L K I + Sbjct: 794 LKKELEKSVYEKAAGLKQVLAAKAEAINGINFIAQQVDLPNADAIKNLAYSL-KDIVPNL 852 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++ + K ++ +++ E L+ NA ++ R AK + GGGGG+P A +GG + Sbjct: 853 FLVLTAQIDGKPNITVMIEESLVKEKGLNAGNIIRELAKEV-QGGGGGQPFYATAGGKDV 911 Query: 883 NKADQAIAGVASFL 896 + + + SF+ Sbjct: 912 SGLPRVLDKARSFI 925 >gi|317014630|gb|ADU82066.1| alanyl-tRNA synthetase [Helicobacter pylori Gambia94/24] Length = 847 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 336/892 (37%), Positives = 498/892 (55%), Gaps = 69/892 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF+ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K +S D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VSVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L+ ++TG+ Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMAEISELTGLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFENC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477 ++EQ R++A G + + ++ Y +F+GY+ S F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTECSAKVLGFFDSDFKEMT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + P Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 473 EANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDKGALLKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 DEEAALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERFEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A + GA AL KY + VRVVS + S LCGG HV +TG I I+ ES + Sbjct: 625 QAKSRGALALFSEKYAENVRVVSFKEA-----SIELCGGVHVENTGLIGGFRILKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ + ++LK+ LK +V+ + ++ E + Q K Sbjct: 680 SGVRRIEAVCGKAFYQLAKEESKELKNAKILLK--NNDVIAGINKLKESVKNSQ----KA 733 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 + + DL KI V+ + ++ + D KE+ +D L+ K + + M+ KE + Sbjct: 734 PVSM---DLPVEKIHGVSLVVGVVEQGDIKEM---IDRLKNKHERLLAMV--FKKENERI 785 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 L ++ + NA A A++L GG GGGR A +GG + K A+ Sbjct: 786 NLACGVKNAPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAAL 834 >gi|238926823|ref|ZP_04658583.1| alanine--tRNA ligase [Selenomonas flueggei ATCC 43531] gi|238885355|gb|EEQ48993.1| alanine--tRNA ligase [Selenomonas flueggei ATCC 43531] Length = 890 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 340/901 (37%), Positives = 516/901 (57%), Gaps = 65/901 (7%) Query: 7 IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +R +L FF +K GH LPS SL+P NDPTL+ +GM P K FTG+ KP + T Q Sbjct: 24 LREAYLNFFAEKKGHLRLPSYSLVPENDPTLLLIGAGMAPLKPFFTGKVKPPRHRIVTCQ 83 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 +CVR G D++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ LT+ +L + +L Sbjct: 84 RCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVIELPKEKL 139 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++T+Y D+EA ++W + GLS D I+ + DNFW + GPCGP SEI+ D G Sbjct: 140 WVTIYPNDDEARQIWLEQPGLSLDHIVPL--EDNFWEIG-PGPCGPDSEIYIDLGAERGC 196 Query: 186 GLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G P S + +R++EIWNLVF Q+++ E +L +IDTG GLER+A+V+Q K N Sbjct: 197 GSPTCSVGCDCDRFLEIWNLVFTQYDRTEDGEYNLLAHKNIDTGCGLERLASVVQNKKTN 256 Query: 244 YDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 ++ DL +I+ + V+ +Y + ++ +VI DH RS +I DGILP+NEGRGYVL Sbjct: 257 FETDLLYPVIEYAVNVSQTEYGADPQKDISLKVIADHARSVVIMIMDGILPSNEGRGYVL 316 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDERFG 359 RR +RRA+ + R+LG T+P + + A+ G + EL+ + I+ +R E+ERF Sbjct: 317 RRTIRRAIRHGRMLGITKPFLDGAVDAVIEIFGDVKDFSELVSKEEYIKRVIRIEEERFA 376 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL +G+ LL+ + L + +IL G+V FKLYDT+G P ++ ++IL GL +D Sbjct: 377 ATLVQGIDLLNEEIDSLKANAQQILPGEVGFKLYDTYGFPRELTEEILHENGLK-LDDAG 435 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F Q +E+QR+RAR S E ++ + G D L Sbjct: 436 FAQEMEKQRNRAR-------SARAENQAVAVPDLSGL-----------------DTSALT 471 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + + V AI + G +V+ G+ ++ TPF+AE GGQ+GD G + D Sbjct: 472 EN-----AEARKAEVVAIWRDGALVDMLHDGESAGIILSTTPFHAEGGGQVGDAGLLLSD 526 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 R+ I + ++ +G H A VE G ++ ++ + +D ++ + NH+ATHLL AL Sbjct: 527 VGRIVIRNTKRLPDGTVYHLAYVEEGQIQRGETVQIQLDEVHKLSSARNHTATHLLQAAL 586 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 I+G HV Q GS +TP+ LRFD T+ +P+T +++ IED VN+ + ++ + M Sbjct: 587 QRIVGDHVHQAGSLVTPERLRFDFTNFEPLTQQQVQDIEDLVNEEVLSSIDLDISTMPIA 646 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL G KY D VRVV V S LCGG+HVS+TG+I L I+ ES + Sbjct: 647 VAKERGAMALFGEKYGDIVRVVEVPN-----FSIELCGGSHVSNTGQIGLFKIIGESGVA 701 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ---LIH 774 AG+RRIEAITG+ A ++ D +++L+ LKV G+++ +V+++ +E + +Q + Sbjct: 702 AGVRRIEAITGRAAYQYVSETDALIRTLSQRLKVKAGDLLTQVDKLIDEKKNMQEQLRVF 761 Query: 775 AKRKLQLNVEDLSCHKIADVNFMS--HII---SEVDS-KELKSVMDALQKKIQSGIIMLV 828 A + Q + + L ++DV + H+I VDS +EL+++ D +K+ +GI++L Sbjct: 762 ADSRDQADAQKL----LSDVQEIGKFHVIVGKVNVDSMEELRNIADLTCEKLSAGIVVL- 816 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 G++ K ++++ +D + +A GGGGGGRP MAQ+GG QA Sbjct: 817 GMAANDKVNLVVKADQDAVAYGAHAGNIIKAAAKAVGGGGGGRPDMAQAGGKMPQNLPQA 876 Query: 889 I 889 Sbjct: 877 F 877 >gi|329121068|ref|ZP_08249699.1| alanine--tRNA ligase [Dialister micraerophilus DSM 19965] gi|327471230|gb|EGF16684.1| alanine--tRNA ligase [Dialister micraerophilus DSM 19965] Length = 885 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 315/897 (35%), Positives = 500/897 (55%), Gaps = 55/897 (6%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L FF+ K H L S LIP +DP+L+ +GM P K FTG+ +P +TT Sbjct: 20 NDIREAYLSFFEEKKNHLRLKSFPLIPKDDPSLLLIGAGMAPMKPYFTGKVEPPCHRITT 79 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ +D+ Sbjct: 80 SQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWAWEFLTEVLKMDKE 135 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY+T++ +D++A+ W K G++ + I R+ DNFW + E GPCGP SEIFFDQGE Sbjct: 136 RLYVTIFPDDQDAYNYWHKNMGVAENHIYRL--EDNFWEIGE-GPCGPDSEIFFDQGESF 192 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +G+R++EIWNLVF QF++Q L K +IDTG GLER+A V+Q+K Sbjct: 193 -GTDPANQMGGDGDRFLEIWNLVFSQFDRQKDGTYLPLAKKNIDTGAGLERLAAVMQQKK 251 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NN++ DLF +I + +++G Y + ++ V +VI DH R+ + +I+DG+LP+NEGRGY Sbjct: 252 NNFESDLFFPIISEASKLSGAVYGVKESDDVALKVISDHARAITNMISDGVLPSNEGRGY 311 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA+ + +L+G + M ++ + M YPEL + + I++ E+ERF Sbjct: 312 VLRRVLRRAIRFGKLIGIEKQFMGRMIDVVVDMMKPEYPELYEKRDFIKKVASVEEERFQ 371 Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL+ G LL ++ K I L+G+ FKLYDT+G P ++ +I G++ ID Sbjct: 372 STLNAGTELLSEMIEDSKKKHINKLSGEYVFKLYDTYGFPWELTDEIAKEEGMS-IDKEG 430 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F ++ +Q+ RAR + + +K + D L Sbjct: 431 FIISMNKQKERARNARVKI----------------------------SAKVLTPDTTKLD 462 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 K V + + + + GE + A G+ + V+ PF+AE GGQ+GD G Sbjct: 463 AKNLTVKDEDVDTTIVMLGKNGEEILSATDGEDLVVILKNNPFHAEGGGQMGDIGILRNS 522 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ + +K +GI + G + + + +D R L+ NH+ THLLH AL Sbjct: 523 SGVFEVHNTKKLPDGIVYLIGTITEGKISVNDIVEVKVDRVRRAALAKNHTGTHLLHAAL 582 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG +Q GS + PD LRFD T ++P+T+ ++ +E VN+ I ++L + T+ + E Sbjct: 583 RQVLGKQATQAGSLVAPDHLRFDFTWNEPLTAKQINDVEKLVNEKILESLTLTTKEVPLE 642 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY VR+V + G S LCGG+H +TGE+ I+SES I Sbjct: 643 EARKAGALALFGEKYGKIVRMVRI-----GDFSLELCGGSHTHTTGEVGSFRIISESGIG 697 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQL 772 +G+RRI A+TG A ++ + +++ A LK + ++ +++++ + +K L+L Sbjct: 698 SGLRRIVALTGISAYKAMVSDRKLIENSAVLLKCKKEEILNKIDKLNGDLKKAEHDILKL 757 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + + K +L+ ++F + + EL+ + D ++ K+ G +L +S Sbjct: 758 KNEQAKGELSSLMSDIKNKNGISFFASTAHADNINELRKIADMIKDKLPKGAFVLSSVSN 817 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K V + E + + + AK+ GGGGG+P +AQ+GG + +K + AI Sbjct: 818 GKVNFVGMASKEAVEAGIHMGKVVSQVAKIC-NGGGGGKPTVAQAGGKDISKVEDAI 873 >gi|317011441|gb|ADU85188.1| alanyl-tRNA synthetase [Helicobacter pylori SouthAfrica7] Length = 847 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 335/892 (37%), Positives = 491/892 (55%), Gaps = 69/892 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL+FF+ NGH + PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFKNNGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 +I+V+++D+EA KLW+K + AD+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 HISVHEKDDEAVKLWEKF--VPADRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++TG+ Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMKEISELTGLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKDMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL ++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477 ++EQ R++A G + + ++ Y F+GY+ S F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNIFVGYETTECSSQALGFFDSDFKEMT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + P Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 473 ETNP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALLKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 NEEAALVLDTKNFFGLNFSLLQIKKTLKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHVSQ GS + LRFD +HSK + EL+ +ED VN I ++L M Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS + S LCGG HV +TG I I+ ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRILKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ ++++LK+ LK +V+ + ++ E R Q A Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNARILLK--NNDVIAGINKLKESVRNSQKTPAPM 737 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 L I +N S ++ V+ ++K ++D L+ K + + M+ E+ A Sbjct: 738 DL----------PIETINGTSVVVGVVEQGDVKEMIDRLKNKHEKLLAMVFKQENERIAL 787 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 V + A A A++L GG GGGR A +GG + K A+ Sbjct: 788 ACGVKNAPI----KAHAWANEVAQIL-GGKGGGRDDFASAGGKDIEKLQAAL 834 >gi|291557844|emb|CBL34961.1| alanyl-tRNA synthetase [Eubacterium siraeum V10Sc8a] Length = 878 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 336/912 (36%), Positives = 509/912 (55%), Gaps = 57/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R ++L+FF+ GH + S+ L+P D +++ N+GM P K F G E+P V Sbjct: 4 TGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPRHRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+DNVG+T RH T+FEMLGNFSFG YFK A AW+ LTK ++ Sbjct: 64 TTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVLEIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++T+Y+ED EA +W G+ D+II++ DNFW +GPCGPCSEI FD+GE Sbjct: 120 EDRLWVTIYEEDNEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFDRGE 178 Query: 182 CIPGGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G + GE R IEIWNLVF QF+ K L +IDTGMGLER+A V+Q+ Sbjct: 179 KY-GPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVMQD 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297 N +++D +++++ V G+ Y + V+ RVI DH+RS++F++ DGI P+NEGR Sbjct: 238 VDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNEGR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG P + + + E +AYPEL + + I++ +++E+E Sbjct: 298 GYVLRRLLRRAARHGRMLGVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEEES 357 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F KT+D+G+ +L + L D+ IL+G+ FKL+DT+G P+D+ ++IL + + GI Sbjct: 358 FAKTVDKGMQILGEFIKELSADDTRKPILSGENLFKLHDTYGFPIDLTREILQEKNI-GI 416 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + + EQ+++AR++ G G E +L T F+GY K + D Sbjct: 417 DEERFFELMNEQKAKARSNQAFKG-GWDEATANALSGL--TTTFVGY------KSLTADS 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K+L A+++ GE+ + G +V VV D TPFYAE+GGQ+GD G Sbjct: 468 KIL-----------------AMIKDGEVTDVCNEGDEVTVVLDVTPFYAESGGQVGDCGT 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +Q+ D +K G F+ + VE G T+ S+ +D + R + NH+ HLL Sbjct: 511 ITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAHLL 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG HV Q GS + P RFD +H +T EL+ IE VND I +PVVT Sbjct: 571 QAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILSGIPVVTEE 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA AL G KY D VRVV G S+ CGGTH+ +T + L I+SE Sbjct: 631 LPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKIISE 685 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--------NVVGRVEEIWE 765 +S+ +G+RRIEA+TG S + ++A LK++ N++ + + Sbjct: 686 TSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPSAVMQKCENMMNEMHAMQA 745 Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 E +L I + +++ NV D ++ + S ++S V L+ D L+ S I Sbjct: 746 EIDRLNGIISMSQMK-NVTD-GATEVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFIA 803 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+S K + I E + NA + + A + GG GGG+P A +G + K Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVKKIAAIA-GGKGGGKPDTAMAGIADVTKI 862 Query: 886 DQAIAGVASFLK 897 D+A+ + +K Sbjct: 863 DEALLALTDIVK 874 >gi|256847960|ref|ZP_05553404.1| alanyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN] gi|256715020|gb|EEU29997.1| alanyl-tRNA synthetase [Lactobacillus coleohominis 101-4-CHN] Length = 883 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 336/927 (36%), Positives = 516/927 (55%), Gaps = 82/927 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + +R +L+FF ++GH+ +PS SL+P +DPTL++ NSG+ K F G+ P +T Sbjct: 8 NSAQVRRMYLDFFIQHGHKEMPSRSLVPVDDPTLLWINSGVATMKKYFDGKVVPDNPRMT 67 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ I AW+LLT + F Sbjct: 68 SSQKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKKEVIPWAWELLTSDEWFGF 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D +LY+T Y +D +A+ W+ +G+ + +I+ DNFW + + GP GP +EIF+D+G Sbjct: 124 DPEKLYVTYYPKDHDAYNYWRA-AGVPENHLIQ--NKDNFWDIGQ-GPSGPDTEIFYDRG 179 Query: 181 ECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + + P PG E ERY+EIWN+VF QF + LP +IDTGMGLER+ Sbjct: 180 QEMNNVAEDDPENYPGG--ENERYLEIWNIVFSQFNHTPEDTYEPLPHKNIDTGMGLERV 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGI 290 ++ + N++ DLF LI+ +E + K G N V ++I DH+R+ +F I DG Sbjct: 238 VSIFENAPTNFETDLFMPLIKQTETFSQNKQYGQNAADDVQFKIIADHIRTITFAIGDGA 297 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYV+RR++RRA+ + LG EP + ++P + M YP++++ I Sbjct: 298 LPSNMGRGYVIRRLLRRAVVTGKKLGIDEPFLAKMVPTVGEIMKDYYPDVLENADYIASV 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 ++SE+ERF TL+ GL LL+ V+ G +EI +G AFKLYDT+G P+++ ++ Sbjct: 358 IKSEEERFSTTLNGGLNLLNNVIDDAKQNGTNEI-DGKTAFKLYDTYGFPIELTKEYASD 416 Query: 408 RGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D F A+ EQ++RAR A + G G +W E ++++GY L Sbjct: 417 EGLT-VDQSGFEAAMTEQQNRARNARDIDNGMGVQTDVWTDFTE---PSKYVGYHQLS-- 470 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA-VSGQKVEVVFDQTPFYAEAG 525 E+ K++ + G+ V+EA +EV+FD TPFYAE G Sbjct: 471 ---VENAKII-----------------GLTADGQHVQEADPQADDIEVIFDVTPFYAEMG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR----- 580 GQ+ DTG I D Q+ V + V HA ++ + R +++ + + + R Sbjct: 511 GQVADTGDII-DNYGHQVGRV------VDVQHAPHQQNLHRVKLTAPIKLGAKYRLVVDR 563 Query: 581 -RQLSI--NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R L I NH+ATHLL AL +LG H Q GS + LRFD H +T+ +LK++E Sbjct: 564 IRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKAVEK 623 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VND I + +PV T + + A GA AL KY D+VRVV + G +++ CGG Sbjct: 624 MVNDQIWKEIPVTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGD 678 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T E+ L IVSE+ + AGIRRIEA+TG A + + + L ++A+ LKVSQ V Sbjct: 679 HVQNTNELGLFKIVSEAGVGAGIRRIEAVTGSDAFKFMQERTDLLDTVANELKVSQEKEV 738 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVDSK---ELKS 811 RV+E+ + + L+ +A + ++ + S + D I +E++ +L+ Sbjct: 739 PHRVQELQTQLKDLEKDNANLQAKIAAQQASQVFDDVQDTKQGRLIAAELNVAGMGQLRQ 798 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 + D + K QS ++L + + KA++L+ V++ + A DL + A + GGGGGR Sbjct: 799 LADQWRAKGQSDFLVLATANGD-KANLLVAVSDTKAKKVKAGDLIKAIAPAI-NGGGGGR 856 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P +AQ+GG N QA+ +L + Sbjct: 857 PTLAQAGGKNPAGIKQALQQANDYLNQ 883 >gi|312132175|ref|YP_003999515.1| alanyl-tRNA synthetase [Leadbetterella byssophila DSM 17132] gi|311908721|gb|ADQ19162.1| alanyl-tRNA synthetase [Leadbetterella byssophila DSM 17132] Length = 887 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 345/930 (37%), Positives = 513/930 (55%), Gaps = 90/930 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+K GH ++PS+ L+ NDPTLMF NSGM FK+ F G P + + QK Sbjct: 6 IRKAFLDFFEKRGHLIVPSAPLVAKNDPTLMFNNSGMAQFKDFFLGNGNPPSKRIADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ A+ +W+LLT+ + L + R+Y Sbjct: 66 CLRVSGKHNDLEEVGFDTYHHTMFEMLGNWSFGDYFKKEALAWSWELLTEVYKLPKDRIY 125 Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF- 177 ++V++ D+EAF +WK I G ++II DNFW M + GPCGPCSEI Sbjct: 126 VSVFEGNPSEGVPFDQEAFDIWKSIIG-DENRIILGNKKDNFWEMGDIGPCGPCSEIHID 184 Query: 178 --DQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 DQ E G +++ + +EIWN VFMQ+E++ LP+ +DTGMG ER+ Sbjct: 185 LRDQEEVDQISGKELVNKDHPQVVEIWNNVFMQYERKADGTLIPLPEKHVDTGMGFERLC 244 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--------VNHRVIVDHLRSSSFLI 286 +Q K +NYD DLF++ IQ EQ++G KY N V RVI DHLR+ SF I Sbjct: 245 MAIQGKKSNYDTDLFQNTIQVIEQLSGFKYGVNGTLSSDNYVDVAMRVIADHLRAVSFAI 304 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 +DG LP+N GYV+RRI+RRA+ Y L + EP M L+P L + +PEL Sbjct: 305 SDGQLPSNAKAGYVIRRILRRALRYGYSYLNFREPFMCKLVPVLAKQFADVFPELQAQVD 364 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 + + + E++ F +TL++GL LD + +++L+G+ F+L DT G P+D+ I Sbjct: 365 FVSKVVEEEEKTFLRTLEQGLKRLDVLFKEDKGEKLLSGETVFELSDTFGFPVDLTALIA 424 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G GID + +ALEEQ++R+R + + W L + A +F+GYD L Sbjct: 425 REKGF-GIDEEGYKKALEEQKARSRKDAQKEAAD-----WVELGDT-DAVEFLGYDQLSS 477 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + + R + + GQ++ VV DQTPFYAE G Sbjct: 478 TALLTKYR----------------------------ISKTKQGQEIHVVLDQTPFYAEMG 509 Query: 526 GQLGDTGC-AIGDGIRLQITDVQKKAEGIFVH-----HAIVERGILRTEMSLVLTIDYQN 579 GQ+GDTG IGD L ++D +K+ + +F+H +A + + ++ + Sbjct: 510 GQVGDTGTITIGDQT-LHVSDTRKEND-LFIHVVKDKNAAEILSGYEEPVEVFAQVNAER 567 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ + NH+ATHL+ AL +LGSH+ Q GS + RFD +H +T ELK +ED V Sbjct: 568 RKNIEKNHTATHLMLAALKEVLGSHIVQRGSYQNDELTRFDFSHFAKVTDEELKKVEDIV 627 Query: 640 NDIIAQN-LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N+ I N L R + ++A+ GA A G KY D VRV++ + +S LCGGTH Sbjct: 628 NEKIRANILKGEKRNVPFQEAVDMGATATFGEKYGDFVRVITFDPN----YSIELCGGTH 683 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STGEI L +SE S+ AG+RR+EA+TG +A + Q + ++ L LK + +++ Sbjct: 684 VNSTGEIGLFRFISEGSVSAGVRRVEAVTGVKALELMREQAQLIQELKDLLKAT--DLLK 741 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA------DVNFMSHIISEVD---SKEL 809 VE + E + Q KR + K+A +VN M+ + + V+ + L Sbjct: 742 AVETLKAENAQFQ----KRIEMFENASIQAAKVALLSKVENVNGMNVVAARVNVPHADGL 797 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGG 867 K++ L++ I +++L G K S+ I++ E+++ NA + R AK++ GG Sbjct: 798 KTLAFGLKQGIGKPVVIL-GAVINDKPSLAILIDENVVKEKNLNAGTIIREVAKLM-KGG 855 Query: 868 GGGRPHMAQSGGPNGNKADQAI-AGVASFL 896 GGG+PH A +GG + D AI A AS L Sbjct: 856 GGGQPHFATAGGSDVKGLDDAIEAAKASIL 885 >gi|145594371|ref|YP_001158668.1| alanyl-tRNA synthetase [Salinispora tropica CNB-440] gi|205830200|sp|A4X5Z0|SYA_SALTO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145303708|gb|ABP54290.1| alanyl-tRNA synthetase [Salinispora tropica CNB-440] Length = 892 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 334/911 (36%), Positives = 499/911 (54%), Gaps = 74/911 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR +L F+ NGH ++PS+ L +DP L+F +GM+ F F GQ+ Y+ Sbjct: 2 KTAEIRRRYLAHFEANGHAVVPSAPLPAISDPNLLFVAAGMMQFVPYFLGQQTAPYKRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD--- 119 +VQKC+R D+D VG+T+RH TFF+M GNFSFG YFK+ AI LAW+L TK D Sbjct: 62 SVQKCLRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDEAIPLAWELSTKPVDAGG 117 Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 LD R++ TVY +D+EAF++W+ + G+ AD+I+R DNFWSM GPCGPCSE+F+ Sbjct: 118 LGLDPDRIWPTVYLDDDEAFQIWRSV-GVPADRIVRRGKADNFWSMGIPGPCGPCSELFY 176 Query: 178 DQGECIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGL 230 D+G G G E E RY+E WNLVFMQFE+ K++ IL P +IDTGMGL Sbjct: 177 DRGPEY--GREGGPEVDEDRYLEFWNLVFMQFERGPGTGKEDYPILGDLPAKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280 ERMA++LQ N Y+ID + ++ + ++TG +Y + + V RV+ DH+R Sbjct: 235 ERMASILQGVDNLYEIDEVRPILAKAAELTGKRYGAHSGQVASESHPDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 ++ LI DG++P+NEGRGYVLRRIMRRA+ RLLG+ E M LLP M ++YPEL Sbjct: 295 TALMLIGDGVIPSNEGRGYVLRRIMRRAIRSIRLLGWQERAMPELLPVARDCMSASYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398 I + +E++ F TL G +LD + + ++G AF+L+DT+G P+ Sbjct: 355 ATDFGRIADYAYAEEDAFLSTLRAGTTILDTAIAETRTAGRRAISGAKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457 D+ +I +GL +D F + + +QR+RA+A + +G + + ++ ++ G F Sbjct: 415 DLTLEIASEQGLQ-VDAEGFRRLMADQRARAKADAQARKTGHVDLSAYRTVLDEGGPVTF 473 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 GY + +E S V+A++ AV G+ VE+V D Sbjct: 474 TGY-----QEVSRE------------------STVRAVLGAASPHAAAVEGETVELVLDT 510 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D G G ++++ DVQ+ G+ VH A V RG +R + ID Sbjct: 511 TPFYAEGGGQQPDLGVITVGGGQVEVLDVQQPVPGLIVHRARVLRGEVRVGETGFAEIDT 570 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 RR +S +H+ATHL+H + LG +Q GS P LRFD + + L+ +E Sbjct: 571 DRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLRDVEQ 630 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ + +L V + + +A GA AL G KY ++VRVV V G ++ LCGGT Sbjct: 631 QVNEALLADLEVRAFVTSLAEARRIGAMALFGEKYGEQVRVVEV-----GDYARELCGGT 685 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV +G++ L+ I+SESSI +G+RR+EA+ G A + L + + LA +V V Sbjct: 686 HVGRSGQLGLVKILSESSIGSGVRRVEALVGIDAFNFLAREHLLVARLAELYRVPSDQVA 745 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815 RVE+ + R + K + QL + ++V ++++ +E + + Sbjct: 746 ERVEQTVTQLRDAEKELEKLRAQLVLGGAAALAAQASEVRGVAYVGTEAPEGAAGNDVRT 805 Query: 816 LQKKIQSGI------IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 L ++I+S I ++ V KAS+++ V + +A DL KV G G Sbjct: 806 LAQEIRSRIDPARPAVVAVAARANGKASLVVAVNPAARSQGLSAADL----VKVAFAGRG 861 Query: 869 GGRPHMAQSGG 879 GG P +AQ GG Sbjct: 862 GGSPELAQGGG 872 >gi|167749584|ref|ZP_02421711.1| hypothetical protein EUBSIR_00542 [Eubacterium siraeum DSM 15702] gi|167657438|gb|EDS01568.1| hypothetical protein EUBSIR_00542 [Eubacterium siraeum DSM 15702] Length = 878 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 333/912 (36%), Positives = 508/912 (55%), Gaps = 57/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R ++L+FF+ GH + S+ L+P D +++ N+GM P K F G E+P V Sbjct: 4 TGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPRHRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+DNVG+T RH T+FEMLGNFSFG YFK A AW+ LTK ++ Sbjct: 64 TTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVLEIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++T+Y+ED+EA +W G+ D+II++ DNFW +GPCGPCSEI FD+GE Sbjct: 120 EDRLWVTIYEEDDEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFDRGE 178 Query: 182 CIPGGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G + GE R IEIWNLVF QF+ K L +IDTGMGLER+A V+Q+ Sbjct: 179 KY-GPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVMQD 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297 N +++D +++++ V G+ Y + V+ RVI DH+RS++F++ DGI P+NEGR Sbjct: 238 VDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNEGR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG P + + + E +AYPEL + + I++ +++E+E Sbjct: 298 GYVLRRLLRRAARHGRMLGVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEEES 357 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F KT+D+G+ +L + L D+ IL+G+ FKL+DT+G P+D+ ++IL + + GI Sbjct: 358 FAKTVDKGMQILGEFIKELSADDTRKPILSGENLFKLHDTYGFPIDLTREILQEKNI-GI 416 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + + EQ+++AR++ G G E +L T F+GY K + D Sbjct: 417 DEERFFELMNEQKAKARSNQAFKG-GWDEATANALSGL--TTTFVGY------KSLTADS 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K+L A+++ GE+ + G +V VV D TPFYAE+GGQ+GD G Sbjct: 468 KIL-----------------AMIKDGEVTDVCNEGDEVTVVLDITPFYAESGGQVGDCGT 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +Q+ D +K G F+ + VE G T+ S+ +D + R + NH+ HLL Sbjct: 511 ITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAHLL 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG HV Q GS + P RFD +H +T EL+ IE VND I +PVVT Sbjct: 571 QAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILAGIPVVTEE 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA AL G KY D VRVV G S+ CGGTH+ +T + L I+SE Sbjct: 631 LPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKIISE 685 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--------NVVGRVEEIWE 765 +S+ +G+RRIEA+TG S + ++A LK++ N++ + + Sbjct: 686 TSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPTAVMQKCENMMNEMHAMQA 745 Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 E +L I + +++ E + ++ + S ++S V L+ D L+ S I Sbjct: 746 EIDRLNGIISMSQMKNVTEGAT--EVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFIA 803 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+S K + I E + NA + + + GG GGG+P A +G + K Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVK-EIAAIAGGKGGGKPDTAMAGIADVTKI 862 Query: 886 DQAIAGVASFLK 897 D+A+ + +K Sbjct: 863 DEALLALTDIVK 874 >gi|259502864|ref|ZP_05745766.1| alanine-tRNA ligase [Lactobacillus antri DSM 16041] gi|259169231|gb|EEW53726.1| alanine-tRNA ligase [Lactobacillus antri DSM 16041] Length = 886 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 332/929 (35%), Positives = 514/929 (55%), Gaps = 98/929 (10%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+FFQ++GH+++PS SL+P NDPTL++ NSG+ K F G+ P +T+ Sbjct: 10 AQVRRMYLDFFQQHGHKVMPSQSLVPVNDPTLLWINSGVATMKKYFDGKVVPENPRMTSS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ I AW+LLT + F D Sbjct: 70 QKSIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFKDEVIPWAWELLTSDDWFGFDP 125 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 RLYIT Y +D +A+ W+++ G++ D +I DNFW + + GP GP +E+F+D+G Sbjct: 126 ARLYITYYPKDHDAYNKWREV-GVAEDHLI--ADEDNFWDIGQ-GPSGPDTEVFYDRGQE 181 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E ERY+EIWN+VF QF + LP +IDTGMGLER+ + Sbjct: 182 FNNLPEDDPESYPGG--ENERYLEIWNIVFSQFNHTPENTYEPLPHKNIDTGMGLERVVS 239 Query: 236 VLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292 + + N++ DLF +I Q + G +Y N V ++I DH+R+ +F I DG LP Sbjct: 240 IFENAPTNFETDLFMPIIKQVAALSAGKEYGANKADDVQFKIIADHIRTITFAIGDGALP 299 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYV+RR++RRA+ + LG EP + L+P + M YPE++Q I ++ Sbjct: 300 SNMGRGYVIRRLLRRAVVAGKKLGIDEPFLAQLVPTVGKIMEDYYPEVLQNADYIASVIK 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE++RF TL+ GL LL+ V++ G ++I +G AFKLYDT+G P+++ ++ G Sbjct: 360 SEEDRFSATLNGGLNLLNSVIADAKQNGSNQI-DGRTAFKLYDTYGFPIELTKEYAADEG 418 Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L +D F A+ EQ++RAR A + G G +W KE ++++GY + Sbjct: 419 LT-VDQKGFEAAMTEQQNRARNARDMDNGMGVQTDLWTDFKED---SKYVGY-----TDL 469 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV-SGQKVEVVFDQTPFYAEAGGQ 527 + +D KV+ + G+ + A Q +EV+FD+TPFYAE GGQ Sbjct: 470 VVDDAKVI-----------------GLAHDGQQADSAAPDDQNIEVIFDKTPFYAEMGGQ 512 Query: 528 LGDTGCAIGD-GIRL-QITDVQKKAEGIFVHHAIVERGILRTEMS--------LVLTIDY 577 + DTG I + G ++ ++ DVQ HA ++ + R E++ L +D Sbjct: 513 VADTGDIIDNYGKKVGRVVDVQ---------HAPNQQNLHRVELTAPLKKGARYKLVVDR 563 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 ++ NH+ATHLL AL +LG H Q GS + LRFD H +T+ +L ++E Sbjct: 564 ARHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEAHYLRFDFNHFGQVTAKDLAAVEA 623 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + +PV T + + A GA AL KY D+VRVV + G +++ CGG Sbjct: 624 MVNEQIFKEIPVTTVETDIDSAKEMGAIALFSDKYGDKVRVVKI-----GDYNTEFCGGD 678 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ---- 753 HV +T E+ L IVSE + AG+RRIEA+T A L ++ L+ +A LK +Q Sbjct: 679 HVKNTNELGLFKIVSEGGVGAGVRRIEAVTSSDAYDFLQQRNAMLEEVAGDLKAAQIKEV 738 Query: 754 -GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---EL 809 V EE+ + ++++ + AK Q + ++ + I +EV +L Sbjct: 739 PHQVANLQEELKQANKQVEALQAKIAAQQ--ANSVFDEVQTTKGGTLIAAEVKVAGMGQL 796 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 + + D + K S +++L G + + KA++L+ V+++ + A DL + A + GGG Sbjct: 797 RQLADRWRAKGLSDVLVL-GTANDGKANLLVAVSDEKVKAGLKAGDLIKAIASAI-KGGG 854 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLK 897 G RP++AQ+GG + AG+ + LK Sbjct: 855 GSRPNLAQAGGKDP-------AGIPAALK 876 >gi|253570246|ref|ZP_04847655.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6] gi|251840627|gb|EES68709.1| alanyl-tRNA synthetase [Bacteroides sp. 1_1_6] Length = 872 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 346/927 (37%), Positives = 507/927 (54%), Gaps = 96/927 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G Y Sbjct: 1 MLTAKEIRDSFKNFFETKGHHIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYHR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L + L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAINWAWEYLVEVLKL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + LY TV++ D+EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 NPEHLYATVFEGSPEEGLSRDDEAASYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + G + + + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRPAEERAKISGRDLVNHDHPQVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ +++A ++G +Y + + RVI DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPMLKAIAAMSGTEYGKDKQQDIAMRVIADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYT-----EPLMMHLLPALCTEMGSAYPELI 341 DG LP+N GYV+RRI+RRA+ Y GYT + M LLP L MG AYPELI Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRY----GYTFLEQKQSFMYKLLPVLIDNMGDAYPELI 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDTHGLPL 398 K LIE+ ++ E+E F +TL+ G+ LLD G GK EI +G AF LYDT G PL Sbjct: 355 AQKGLIEKVIKEEEEAFLRTLETGIRLLDKTMGDTKAAGKTEI-SGKDAFTLYDTFGFPL 413 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + IL G+ ++I FN +++Q+ RAR ++ + +G W +L+E G T+F+ Sbjct: 414 DLTELILRENGMT-VNIEEFNTEMQQQKQRAR-NAAAIETGD----WVTLRE--GTTEFV 465 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQKVEVVFD 516 GY D T +SI+ + I Q+ + + ++V D Sbjct: 466 GY----------------------DYTEYEASILRYRQIKQKNQTL--------YQIVLD 495 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 TPFYAE+GGQ+GDTG + + +++ D KK + +H I ++ E ++ +D Sbjct: 496 CTPFYAESGGQVGDTGVLVSEFETIEVIDT-KKENNLPIH--ITKKLPEHPEAPMMACVD 552 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R + NHSATHLL AL +LG H+ Q GS +TPD LRFD +H + +T E++ +E Sbjct: 553 TDKRAACAANHSATHLLDSALREVLGEHIEQKGSLVTPDSLRFDFSHFQKVTDEEIRQVE 612 Query: 637 DNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 VN I N+P+ R + E+A GA AL G KY +RVRV+ S CG Sbjct: 613 HLVNAKIRANIPLKEYRNIPIEEAKELGAIALFGEKYGERVRVIQFG------SSIEFCG 666 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG- 754 G HV++TG I ++ I+SESS+ AG+RRIEA TG R L + + L S + Sbjct: 667 GIHVAATGNIGMVKIISESSVAAGVRRIEAYTGARVEEMLDTIQDTISELKSLFNNAPDL 726 Query: 755 --NVVGRVEEIW------EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 + +EE E+Y K + K +L N++++ H I + F + + +EV Sbjct: 727 GIAIRKYIEENAGLKKQVEDYMKEKEASLKERLLKNIQEI--HGIKVIKFCAPLPAEV-- 782 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGG 865 +K++ L+ +I + + G K + ++++++L+ A +L + +AK++ Sbjct: 783 --VKNIAFQLRGEITENLFFVAGSLDNGKPMLTVMLSDNLVAGGLKAGNLVKEAAKLI-Q 839 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+PH A +GG N + + AI V Sbjct: 840 GGGGGQPHFATAGGKNTDGLNAAIEKV 866 >gi|315653055|ref|ZP_07905983.1| alanine--tRNA ligase [Lactobacillus iners ATCC 55195] gi|315489590|gb|EFU79224.1| alanine--tRNA ligase [Lactobacillus iners ATCC 55195] Length = 906 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 348/918 (37%), Positives = 523/918 (56%), Gaps = 73/918 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 36 SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 95 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K LD Sbjct: 96 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 151 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 152 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 208 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 209 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 266 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +I+ +E+++ G +Y + V ++I DH+R+ SF IADG LP Sbjct: 267 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 326 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E+ ++ Sbjct: 327 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 386 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RF +TL GL LLD ++S K L+G AFKL+DT+G P ++ + GL Sbjct: 387 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 446 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A +D F+ ++ Q+ RAR L S G+ + ++K++ + F + L Sbjct: 447 A-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 495 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +ED L IV ++V++ V+G++ ++FD+TPFYAE GGQ+ Sbjct: 496 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 538 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G L + DVQ +H + + + E VL +D Q RR L NH Sbjct: 539 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 597 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I + Sbjct: 598 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 657 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I + Sbjct: 658 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 712 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762 L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K + Q VV + Sbjct: 713 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 772 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 + EE + ++ + ++ Q DL+ I D+N + I VD +L+ + D + + Sbjct: 773 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 830 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G + KA++LI + + + A DL +++A + GGGGGGRP+MAQ+G Sbjct: 831 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 888 Query: 879 GPNGNKADQAIAGVASFL 896 G N QA+ V + L Sbjct: 889 GKNPAGLAQALETVLNEL 906 >gi|302541105|ref|ZP_07293447.1| alanine-tRNA ligase [Streptomyces hygroscopicus ATCC 53653] gi|302458723|gb|EFL21816.1| alanine-tRNA ligase [Streptomyces himastatinicus ATCC 53653] Length = 828 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 317/809 (39%), Positives = 462/809 (57%), Gaps = 63/809 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ +P Y+ Sbjct: 1 MMESAEIRRRWLRFFEERGHTVVPSASLI-ADDPTLLLVNAGMVPFKPFFLGEVQPPYKR 59 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--- 117 +VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW+LLT Sbjct: 60 AVSVQKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAITYAWELLTGSVAD 115 Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 + LD RL+ITVY++D+EA ++W+ + G+ A++I R+ N+WSM GPCGPCSEI Sbjct: 116 GGYGLDPERLWITVYEQDDEAERIWRDVVGVPAERIQRLGMGPNYWSMGVPGPCGPCSEI 175 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMG 229 +D+G G G + ERY+EIWNLVFMQ+E+ +E F LP +IDTG+G Sbjct: 176 NYDRGPEF-GVEGGPAVNDERYVEIWNLVFMQYERGPGEGKENFPILGELPSKNIDTGLG 234 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIA 287 LER+A +LQ N Y+ D + ++ + ++TG+ Y ++ V+ RV+ DH+R+S LI Sbjct: 235 LERLAMILQGVQNMYETDTLRVVMDKATELTGVAYGSSHDSDVSLRVVADHMRTSVMLIG 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P NEGRGYVLRRIMRRA+ R+LG EP++ L+ + MG YPEL+ + I Sbjct: 295 DGVTPGNEGRGYVLRRIMRRAIRNMRILGAAEPVVGELVDVVLKTMGQQYPELLTDRKRI 354 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E +E+ F KTL G +LD ++ +L GD AF L+DT G P+D+ ++ Sbjct: 355 ETVALAEESAFLKTLKAGTNILDTAVTDTKAAGGSVLPGDKAFLLHDTWGFPIDLTLEMA 414 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLR 464 +GL+ +D F + + EQR RA+A + +G + + + + G+T+F GY Sbjct: 415 AEQGLS-VDEDGFRRLMREQRERAKADAKAKKTGHADLSAYREVADTSGSTEFTGYSD-- 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 T+G S++V +V G A G +VEVV D+TPFYAE Sbjct: 472 --------------------TSGESTVVGLLVD-GVSSPAASEGDEVEVVLDRTPFYAEG 510 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL DTG + G +++ DVQ+ G+ VH +V+ G + ID + RR + Sbjct: 511 GGQLADTGKIKLASGAVVEVRDVQQPVPGVSVHKGVVQVGEVTVGSGAYAEIDVRRRRAI 570 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + HSATHL H AL LG +Q GS +P RFD + L +E +N+++ Sbjct: 571 ARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPSAVPGGVLTDVEQKINEVL 630 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 ++ L V +M+ +DA GA A G KY DRVRVV++ G S LCGGTHV +T Sbjct: 631 SRELDVTAEVMSMDDAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTA 685 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 ++ L+ ++ ESSI +G+RR+EA+ G A + L + + L +K GR EE+ Sbjct: 686 QLGLVKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSQLTDLVK-------GRPEEL 738 Query: 764 WEEYRKLQLIHAK-RKLQLNVEDLSCHKI 791 E K+ + AK R + +E K+ Sbjct: 739 PE---KISGMLAKLRDAEKEIERFRAEKV 764 >gi|291460300|ref|ZP_06599690.1| alanine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417055|gb|EFE90774.1| alanine--tRNA ligase [Oribacterium sp. oral taxon 078 str. F0262] Length = 882 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 339/899 (37%), Positives = 508/899 (56%), Gaps = 48/899 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 V+ +R FLEFF++ H + S SL+P ND +L+ NSGM P K FTGQE P + VTT Sbjct: 6 VNELRRMFLEFFEEKQHLRMKSFSLVPHNDKSLLLINSGMAPLKPYFTGQEIPPRKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++N+G+T RH TFFEMLGNFSFG YFKE AI AW+ LT+ + Sbjct: 66 CQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKEEAIHWAWEFLTERVGIPAD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY +VY +D+EAF++WK+ G++ ++I R DNFW GPCGPCSEI++D+GE Sbjct: 122 RLYPSVYLDDDEAFRIWKEEIGIAPERIYRFGKEDNFWEHG-AGPCGPCSEIYYDRGEKY 180 Query: 184 ---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 P + G EG+R++E+WN+VF QF L +IDTGMGLER+A V Q+ Sbjct: 181 GTGPEDVMGG--EGDRFMEVWNIVFSQFNNDGHGVYTELEHKNIDTGMGLERLAVVCQDV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 + +D+D + +++ + +YE + V+ R+I DH++S +F+ +DGILP+NEGRG Sbjct: 239 LSLFDVDTNRAMMEEIGALAHCRYEEDPEKDVSFRIIADHVKSCTFMASDGILPSNEGRG 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YV RR++RRA + ++LG M L + YPEL + + +I + E+ERF Sbjct: 299 YVFRRLLRRAARHGKILGLKGRFMAALSQKVIELSKDGYPELEEKREMILRVIEQEEERF 358 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 T+D+GL +L + + K +++L+G+ AF+LYDT G P D+ ++IL +G + ID Sbjct: 359 QNTIDKGLEILSELQEEMKKRGEKVLSGEDAFRLYDTFGFPPDLTREILSDKGQS-IDEE 417 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY-DLLRGSKFMKEDRKV 475 F +A+ QR ARA + I+ L K T+F GY L SK Sbjct: 418 GFQKAMRLQRETARAARKSTNYMGRDDIYQRLDPKL-RTEFTGYHSLTERSK-------- 468 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQG--EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 ++++V+ + G EIV+ G++ V+ ++TPFYA GGQ+GDTG Sbjct: 469 ------------ITALVRLAPEDGEDEIVDVLTDGERGAVLTERTPFYATMGGQVGDTGS 516 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +G + + G + G+L+ L +D R + + NH+ATHLL Sbjct: 517 ILGGEGDFTVEETIHLQGGKIAEIGTMRSGMLKAGEEAELRVDPIRRERTARNHTATHLL 576 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG+HV Q G+ LRFD TH + +T E++ +E+ VN I++ PV T Sbjct: 577 HEALREVLGNHVEQAGAYYDDKRLRFDFTHFEALTEEEIRKVEEIVNREISKLTPVKTEE 636 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M+ EDA SGA AL G KY DRVRVVSV G S LCGGTHV++T EI L I+SE Sbjct: 637 MSLEDAKKSGAVALFGEKYGDRVRVVSV-----GDFSKELCGGTHVANTAEIQGLKILSE 691 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 I +G+RRIEA+T + ++ ++E L+ A LK ++ R+ + +E + + Sbjct: 692 QGIASGVRRIEALTSENLMAYFSEEEELLREAAKLLKTEPKHLSERILALEKELKDSRAE 751 Query: 774 HAKRKLQLNVE---DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 + +L E +LS +I+ V+F++ + D L+ + D L+++ I+L Sbjct: 752 AESLRAKLAKESMGELSVEEISGVSFLAKALEGADGNSLRELGDQLKERYPDAFIVLASD 811 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K + + +A L R A +L GGGGGGRP+MAQ+GG + ++ +A+ Sbjct: 812 KGGKPCLMATAADSAVKKGADAGALIRAVAPIL-GGGGGGRPNMAQAGGKDTSRIPEAL 869 >gi|205830258|sp|A4SGJ6|SYA_PROVI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 885 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 326/871 (37%), Positives = 486/871 (55%), Gaps = 79/871 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +FL+FF H ++ S+ +IP +DPTL+FTN+GM FK++F + Y Sbjct: 4 SDIRQSFLDFFVGKSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRSYSRAADT 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+KE AI AW+LLT + L + R Sbjct: 64 QKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLTVVWKLPEER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY TVY +D+E+F++W++ + + D I+R DNFW M ETGPCGPCSEI D P Sbjct: 124 LYATVYHDDDESFRIWEEKTSIRPDHILRFGDKDNFWEMGETGPCGPCSEIHID---LTP 180 Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G + + + + IE+WNLVF+Q+++Q LP+ +DTGMG ER+ V+Q K++ Sbjct: 181 DGSGRALVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFERVCAVMQGKSS 240 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NYD D+F+ L ++TG++Y + + RVI DH R+ SF ++DG +P+NEGRG Sbjct: 241 NYDTDVFRPLFDTITELTGVEYGASMHDPQDIAMRVIADHARTLSFALSDGAMPSNEGRG 300 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ YA+ LGY +P++ L+ + MG +PEL + + +++E+E F Sbjct: 301 YVLRRILRRALRYAKDLGYNKPILHRLVATVADSMGDVFPELRDRQDAVARIVKAEEESF 360 Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 TLDRG+ + +G++ + + L G+ AFKLYDT+G P D+ + + + GL +D Sbjct: 361 LVTLDRGIEIFNGLVGKVRGEGSSTLEGEDAFKLYDTYGFPFDLTRLMASSAGLQ-VDGE 419 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++EQ++RAR G E+ WFS AT+F GYD L D Sbjct: 420 GFERCMQEQKTRARQDRREKQRGGAEEGSWEWFS---DLHATEFTGYDGLEA------DA 470 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 ++ G+S K ++ +V D+TPFYAE+GGQ GD G Sbjct: 471 SII----------GISRSKKNLL----------------LVLDRTPFYAESGGQTGDRGW 504 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS-------------LVLTIDYQNR 580 RL++TD QK + FVH +V R S + ++D + R Sbjct: 505 IETGEYRLEVTDTQKDGDS-FVH--VVTRAFDNVRDSEADPADIAVGPGRVHASVDRKLR 561 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NH+ATHLLH L LG+HV Q GS + P+ LRFD +H +T E+ ++E VN Sbjct: 562 QATERNHTATHLLHAVLRHTLGAHVQQKGSLVNPERLRFDFSHFSKLTPEEIDAVESAVN 621 Query: 641 DIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 D I Q + + +DAI GA A G KY D VRVV + G+ S LCGGTHV Sbjct: 622 DCIRQAEATLKHADVPYDDAITKGALAFFGDKYADLVRVVEIP----GI-SVELCGGTHV 676 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVG 758 + G+I L IV ESS+ AG+RRIEA+TG+ A + + +L + LK+ ++ Sbjct: 677 DNVGQIGLFKIVGESSVAAGVRRIEALTGRAAEELMWNEYRELHDVRQLLKMKAEEPPAE 736 Query: 759 RVEEIWEEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813 +V I EE R L+ A+ K ++L + + + ++ ++ D++ L+ Sbjct: 737 KVAAILEERRALEKQLAELKAEVLLVKLQGDASALEDVCGCRIVARVVDGADAEGLRYAA 796 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTE 844 L+++ +L S E K S+ ++ Sbjct: 797 QMLRQQFPLSAGLLCS-SAEGKVSLAAFASD 826 >gi|254383594|ref|ZP_04998944.1| alanyl-tRNA synthetase [Streptomyces sp. Mg1] gi|194342489|gb|EDX23455.1| alanyl-tRNA synthetase [Streptomyces sp. Mg1] Length = 889 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 344/914 (37%), Positives = 509/914 (55%), Gaps = 84/914 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ N+GMVPFK F G+ KP T+V Sbjct: 4 AEIRRRWLSFFEERGHAVVPSASLI-ADDPTLLLVNAGMVPFKPYFLGETKPPAPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT + Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKYAWELLTSSVADGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ +L+ITVY +D+EA +W++ G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LEPEKLWITVYLDDDEAETIWREKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ + +E F LP +IDTG+GLER+ Sbjct: 179 GPDF-GVEGGPAVNDERYVEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290 A +LQ N Y+ D + ++ + ++TG+ Y +G + V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYETDTLRVVMDKATELTGVLYGAAQGTD-VSMRVVADHIRTSVMLIGDGV 296 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P NEGRGYVLRRIMRRA+ RL+G T P++ L+ + MG YPEL+ + IE Sbjct: 297 TPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVQDLVDVVINTMGQQYPELVTDRKRIETV 356 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E+ F K + G +LD +S +L+GD AF L+DT G P+D+ ++ + Sbjct: 357 ALAEEAAFLKAVKGGTNILDTAVSETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMAAEQ 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSK 467 GL+ +D F + ++EQR RA+A + +G + + + + GAT+F GY Sbjct: 417 GLS-VDEPGFRRLMQEQRDRAKADAKAKKTGHADMSAYREIADGSGATEFTGYAT----- 470 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T G S+IV +V G A G +VEVV D+TPFYAE GGQ Sbjct: 471 -----------------TQGESTIVGLLVN-GVSAPAASEGDEVEVVLDRTPFYAEGGGQ 512 Query: 528 LGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 L D G + G + + DVQ+ G+ VH V+ G + S ID RR ++ Sbjct: 513 LADQGRIKLDSGAVIVVRDVQQPVPGVSVHKGSVQVGEVTVGASAYAAIDVSRRRAIARA 572 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL H AL LG +Q GS +P RFD + L +E +ND++++ Sbjct: 573 HSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINDVLSRE 632 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 L V IM+ ++A GA A G KY +RVRVV++ G S LCGGTHV +T ++ Sbjct: 633 LDVTAEIMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVGNTAQLG 687 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L+ ++ ESSI +G+RR+EA+ G A + L + + L +K GR EE+ E+ Sbjct: 688 LVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEK 740 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKI-----------ADVNFMSHIISEVD----SKELKS 811 ++ + + +E K+ D+ ++ ++ V + +L+ Sbjct: 741 I--ASMLGKLKDAEKEIEKFRAEKVLQAAAGLAAGAQDIRGVALVVGSVPDGTGADDLRK 798 Query: 812 VMDALQKKIQ---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867 ++ ++ +IQ ++ L + ++ +V I E +R A DL R +AK L GGG Sbjct: 799 LVLDVRGRIQGDRPAVVALFTTANDRPLTV-IATNEAARERGLKAGDLVRTAAKTL-GGG 856 Query: 868 GGGRPHMAQSGGPN 881 GGG+P +AQ GG N Sbjct: 857 GGGKPDVAQGGGQN 870 >gi|312873707|ref|ZP_07733752.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2052A-d] gi|325911933|ref|ZP_08174336.1| alanine--tRNA ligase [Lactobacillus iners UPII 143-D] gi|311090705|gb|EFQ49104.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2052A-d] gi|325476235|gb|EGC79398.1| alanine--tRNA ligase [Lactobacillus iners UPII 143-D] Length = 877 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 348/918 (37%), Positives = 523/918 (56%), Gaps = 73/918 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +I+ +E+++ G +Y + V ++I DH+R+ SF IADG LP Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E+ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RF +TL GL LLD ++S K L+G AFKL+DT+G P ++ + GL Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A +D F+ ++ Q+ RAR L S G+ + ++K++ + F + L Sbjct: 418 A-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +ED L IV ++V++ V+G++ ++FD+TPFYAE GGQ+ Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G L + DVQ +H + + + E VL +D Q RR L NH Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I + Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I + Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762 L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K + Q VV + Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 + EE + ++ + ++ Q DL+ I D+N + I VD +L+ + D + + Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G + KA++LI + + + A DL +++A + GGGGGGRP+MAQ+G Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859 Query: 879 GPNGNKADQAIAGVASFL 896 G N QA+ V + L Sbjct: 860 GKNPAGLAQALETVLNEL 877 >gi|291513841|emb|CBK63051.1| alanyl-tRNA synthetase [Alistipes shahii WAL 8301] Length = 873 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 314/799 (39%), Positives = 452/799 (56%), Gaps = 73/799 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH ++PS+ ++ DPTLMFTN+GM FK+IF G Y Sbjct: 4 NKIRQAFLDFFESKGHAIVPSAPMVVKGDPTLMFTNAGMNQFKDIFLGNAPRKYPRAADT 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG HHT FEMLGN+S+G YFK+ AI+ AW+LL + L R Sbjct: 64 QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSYGDYFKKEAIEWAWELLHGVYGLPAER 123 Query: 125 LYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 +Y TV++ D+EA+ W + L AD IIR +DNFW M ETGPCGPCSEI Sbjct: 124 MYATVFEGSEEDGVPFDQEAYDYWLRY--LPADHIIRGNKHDNFWEMGETGPCGPCSEIH 181 Query: 177 FD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 FD + E PG + + IEIWNLVFMQF ++ LP ++DTGMG ER Sbjct: 182 FDLRDEAEIAAKPGREMVNASHPQVIEIWNLVFMQFNRKANGSLEELPARNVDTGMGFER 241 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 + +LQ K +NYD D+F+ I +++G KY + V RVI DHLR+ +F IADG Sbjct: 242 LCMILQGKKSNYDTDVFQPTIGRIAEMSGKKYGEDRKADVAMRVIADHLRAIAFSIADGQ 301 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+N GYV+RRI+RRA+ Y LG+TEP + L+P L +MG +PEL + LIE+ Sbjct: 302 LPSNVKAGYVIRRILRRAVRYGYTYLGFTEPTLCRLVPGLVGQMGGQFPELKAQQGLIEK 361 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407 + E+ F +TL G+ LLDGV+S + E+++G AF+LYDT G P+D+ + I Sbjct: 362 VIEEEESSFLRTLATGINLLDGVISRTKGEGKELISGKDAFELYDTFGFPIDLTELIARE 421 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW---FSLKEKYGATQFIGYDLLR 464 +G+ G+D+ +F + L+ Q+ R+R + W F ++E + F GYD L Sbjct: 422 QGV-GVDLAAFEKELQAQKERSRN-----AAAVDTDDWVELFPIRE----SVFTGYDTLT 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + R+V + G +S ++VFD+TPFY + Sbjct: 472 EKVRIARYRRV--------TSKGKTSY--------------------QLVFDRTPFYGNS 503 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G R+ + +K+ G+ +H IV + +D + R+ + Sbjct: 504 GGQVGDIGMIESANERIPVVATEKE-NGLIIH--IVNQLPENPAAEFTARVDPEKRQAAA 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHL+H AL +LG+HV Q GS +TP+ LRFD +H + +T EL+ +E VN I Sbjct: 561 NNHTATHLMHEALRKVLGAHVEQKGSLVTPEILRFDFSHFQKVTPEELRKVEQLVNRAIR 620 Query: 645 QNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N P+V R +E+A GA L G KY D+VR+V S LCGGTH +TG Sbjct: 621 ANYPLVENREATKEEAEKCGAMMLFGEKYGDKVRMVRFG------SSVELCGGTHTGATG 674 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I I+SES+I AG+RRIEA+TG++A L ++ ++++A +L Q VV V+++ Sbjct: 675 NIGFFKILSESAISAGVRRIEAVTGEQAEKVLYAAEDTMRNIAEYLNNPQ--VVQAVKKM 732 Query: 764 WEEYRKL-QLIHAKRKLQL 781 E L + + + R+ Q+ Sbjct: 733 LESNETLSKEVESMRREQV 751 >gi|298372626|ref|ZP_06982616.1| alanine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058] gi|298275530|gb|EFI17081.1| alanine--tRNA ligase [Bacteroidetes oral taxon 274 str. F0058] Length = 867 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 350/921 (38%), Positives = 512/921 (55%), Gaps = 93/921 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N R FL+FF+ H+++PS+ ++ +DPTLMFTN+GM FKNI G + Y V Sbjct: 2 NSKETRKAFLDFFRGKQHKIVPSAPMVIKDDPTLMFTNAGMNQFKNIILGNDPIKYTRVA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ LT+ LD+ Sbjct: 62 DTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAISWAWEFLTEVIKLDK 121 Query: 123 RRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 RLY+TV++ D+EA +W++ L ++II DNFW M + GPCGPCSE Sbjct: 122 DRLYVTVFEGSKEDGLSRDDEAAAMWEQF--LPKERIIDGNKKDNFWEMGDVGPCGPCSE 179 Query: 175 IFFD---QGE-CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 I D Q E GL + + IEIWNLVFMQ++++ LP IDTGMG Sbjct: 180 IHIDIRPQAERDAVDGLTLVNGSHPQVIEIWNLVFMQYDRKADGSLTSLPNKVIDTGMGF 239 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+ LQ K++NYD D+F+ +IQ +++GM Y + V RVI DH+R+ +F IAD Sbjct: 240 ERLCMALQGKSSNYDTDIFQPIIQEIAKISGMSYRQDAKTDVAMRVIADHIRTIAFSIAD 299 Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 G LP+N GYV+RRI+RRA+ Y LG E M L+P LC+ MG + E+I + LI Sbjct: 300 GQLPSNAKAGYVIRRILRRAVRYGYTFLGQREAFMYRLVPILCSVMGDNFTEIISQRDLI 359 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 E+ ++ E+E F +TL+ G+ LL+ + K +L+G+VAF LYDT+G PLD+ + IL Sbjct: 360 EKVIKEEEEAFLRTLETGIRLLEKNMP-TAKGGVLSGEVAFTLYDTYGFPLDLTELILRE 418 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGS 466 G+ +D+ F+ +++Q+ RAR + T E W + + G + F+GYD Sbjct: 419 NGMT-VDVAEFDSEMKKQKERAR------NAATVETDDWVVVSD--GDSLFVGYD----- 464 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ E + + +K V+Q + + ++V QTPFYAE GG Sbjct: 465 QYCTETKIIRYRK----------------VKQK-------NKEYYQLVLSQTPFYAEKGG 501 Query: 527 QLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 Q+GD G G DG ++I D K + VH + ++ + I+ ++R + Sbjct: 502 QVGDRGKLTGSEDGSLVEIFDT-KTENNLHVH--LADKLPSNVAQTFTAEINTESRLATA 558 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATH+LH AL +LG HV Q GS + D LRFD +H + +T E++ +E N I Sbjct: 559 RNHTATHILHEALREVLGKHVEQKGSYVCADNLRFDFSHFQKMTDDEIRRVETIANRRIR 618 Query: 645 QNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N P+ R + +A A GA AL G KY + VRVV S LCGGTHVS TG Sbjct: 619 DNYPLEEMRQLPIAEARAMGAIALFGEKYGETVRVVKFG------SSVELCGGTHVSRTG 672 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I ++ IV+ESS+ AG+RRIEAITG+ EKL + ++ S + ++ Sbjct: 673 DIGMVKIVAESSVAAGVRRIEAITGEAV--------EKLIYMHEYVISSAKELFNNTPDL 724 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-----------VNFMS--HIISEVDSKELK 810 + + + ++LQ VED S KIA VN + H+ + + +K Sbjct: 725 LKAIQ--HAVKENKELQKRVEDFSREKIASMCQELLKEARTVNGIRQIHLKTTLPPDMIK 782 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 ++M L+ + ++G + K S+ ++V++DL+ + FNAV + R +AK + GGGG Sbjct: 783 TLMFQLRNTSNDNLFAVIGSVHDNKPSLTVLVSDDLVAKGFNAVQIVRQAAKHI-QGGGG 841 Query: 870 GRPHMAQSGGPNGNKADQAIA 890 G+P AQ+GG N N D AIA Sbjct: 842 GQPFFAQAGGKNPNGLDDAIA 862 >gi|297155787|gb|ADI05499.1| alanyl-tRNA synthetase [Streptomyces bingchenggensis BCW-1] Length = 889 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 343/906 (37%), Positives = 513/906 (56%), Gaps = 68/906 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + +V Sbjct: 4 AEIRRRWLRFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFDRAVSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT + Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTTSVEEGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ +L+ITVY ED+EA ++W+ + G+ A++I R+ NFWSM GPCGPCSEI +D+ Sbjct: 119 LEPEKLWITVYKEDDEAERIWRDVIGVPAERIQRLGMGPNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E+ + K++ IL P +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ D + +I + ++TG+ Y ++ V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVHNMYETDNLRAVIDKATELTGVAYGAGHDSDVSLRVVADHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ R+LG TE ++ L+ + MG YPEL+ + IE Sbjct: 298 PGNEGRGYVLRRIMRRAIRNMRILGATELVVGELVDVVLKTMGQQYPELLTDRKRIETVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G +LD ++ +L GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKTLKAGTNILDTAVTDTKAAGSTVLAGDKAFLLHDTWGFPIDLTLEMAAEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A + +G + + + + G+T F GY Sbjct: 418 LS-VDEDGFRRLMKEQRERAKADAKAKKTGHADLSAYREVADTSGSTVFTGYTD------ 470 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T G S+IV +V G A G +VEVV D+TPFYAE GGQL Sbjct: 471 ----------------TEGESTIVGLLVD-GLPSPAATEGDEVEVVLDRTPFYAEGGGQL 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D+G + G +++ DVQ+ G+ VH V+ G + ID + RR ++ H Sbjct: 514 ADSGRIRLDSGAVVEVRDVQQPVPGVSVHKGTVQVGEVTVGAGAYAQIDIKRRRAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS +P RFD + A L +E +N+++++ L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPAAVPGAVLTDVEQKINEVLSREL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M+ E+A GA A G KY DRVRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVTAEVMSMEEAKKQGAIAEFGEKYGDRVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS----QGNVVGRVEEI 763 + ++ ESSI +G+RR+EA+ G A + L + + L +K + G + ++ Sbjct: 689 VKLLGESSIGSGVRRVEALVGVDAYNFLAREHTVVSRLTDLVKGRPEELPEKISGMLAKL 748 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQKK 819 E ++++ A++ LQ + K DV ++ + +V + +L+ ++ ++ + Sbjct: 749 KEAEKEIERFRAEKVLQAAAGLAAGAK--DVRGVALVTGQVPDGTSADDLRKLVLDVRGR 806 Query: 820 IQ---SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 IQ ++ L ++ + +V I E +R A DL R +AK L GGGGGG+P +A Sbjct: 807 IQGDRPAVVALFSVANGRPVTV-IATNEAARERGLKAGDLVRAAAKAL-GGGGGGKPDVA 864 Query: 876 QSGGPN 881 Q GG N Sbjct: 865 QGGGTN 870 >gi|320120352|gb|EFE28354.2| alanine--tRNA ligase [Filifactor alocis ATCC 35896] Length = 881 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 319/857 (37%), Positives = 496/857 (57%), Gaps = 69/857 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 +V+ IR ++L+FF H + PS L+P ND +L+ N+GM P KN F G EKP Sbjct: 5 FKSVNEIRKSYLDFFASKDHYVSPSFPLVPINDNSLLLINAGMAPLKNYFMGIEKPPKNR 64 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 ++T QKC+R G D++NVG T RH TFFEMLGNFSFG YFK AI AW+ +T ++ Sbjct: 65 MSTCQKCIRTG----DIENVGITARHATFFEMLGNFSFGNYFKNEAIAWAWEFVTTVLEI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQ 179 L++TVY+ED+EA+ +W+ G+S D+I+R+ DNFW + TGPCGPCSEI+ D+ Sbjct: 121 SPELLWVTVYEEDDEAYNIWRDKIGVSEDRIVRLGKEDNFWEIGTGTGPCGPCSEIYIDR 180 Query: 180 G--------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 G C PG + +R++E WNLVF QF ++ + LP +IDTGMGLE Sbjct: 181 GAEFGCDDEHCKPGC------DCDRFLEFWNLVFTQFNKEEDKTLTPLPHPNIDTGMGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 R+A +LQ + +DID + +I+ E++ +KY + ++ R+I DH+R+ +FLI DG Sbjct: 235 RVACMLQGVDSIFDIDTMQDIIRKIEELLHVKYREDSKKDISIRIITDHIRAVTFLIGDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 ++P+NEGRGYVLRR++RRA + +LLG P + L+ + AYPEL + + I + Sbjct: 295 VIPSNEGRGYVLRRLLRRAARHGKLLGMDRPFLHELMSKVIEINADAYPELKEKQEYIYK 354 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 ++ E+++F +T+ +GL +L ++ + + +++ + AF+LYDT G P D+ ++IL Sbjct: 355 VIKVEEDKFEETIYQGLEILREEMNRMKDTNETMMSPEKAFRLYDTFGFPFDLTKEILTE 414 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G + ++ F + +E+QR+RAR+ + +K SL T F GY + Sbjct: 415 EGFS-VEEEGFYEEMEKQRNRARSARKDSDNEGWKKENISLD--LEPTVFEGY-----TS 466 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F +E +SI+ +IVQ+ +++ A G K + ++TPFYAE+GGQ Sbjct: 467 FTEE-----------------ASII-SIVQEDALIQTAKKGDKAIFILNRTPFYAESGGQ 508 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD G ++ + +K + +H V G + S++ I+ R + NH Sbjct: 509 VGDIGILESQRGKVSVIQTKKGNNDVIMHIGEVIEGEISVGDSMIAEINESRRNETMRNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHLLH AL T+LG+HV+Q GS +TP+ +RFD TH + +T EL+ +E VN I L Sbjct: 569 SATHLLHKALRTVLGNHVTQAGSFVTPERVRFDFTHFEAMTKEELQKVELAVNGAIYSYL 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V + M E A GA AL G KY VRVVS+ G +S LCGGTHVS+T EI + Sbjct: 629 EVTCQEMAIEKAKEKGAMALFGEKYGQTVRVVSM-----GDYSVELCGGTHVSNTSEIGM 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 IVSES + +G+RRIEA+TG + L Q+ L+ L+ +K Q + RV E+ Sbjct: 684 FKIVSESGVASGVRRIEAVTGMKVYEVLKKQEGLLEDLSEKMKTKQDQLSERV-----EH 738 Query: 768 RKLQLIHAKRK--------LQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQ 817 + ++L AK++ LQ N++++ H ++D+ +++ VDS +L+++ +L Sbjct: 739 QIVELKEAKKEIAQLKNTILQENMDNIMSHCIDVSDLKLLTNEFENVDSDDLRNIAQSLV 798 Query: 818 KKIQSGIIMLVGISKEK 834 K + +++L EK Sbjct: 799 DKDDTLVVVLASKKDEK 815 >gi|167756780|ref|ZP_02428907.1| hypothetical protein CLORAM_02329 [Clostridium ramosum DSM 1402] gi|237734498|ref|ZP_04564979.1| alanyl-tRNA synthetase [Mollicutes bacterium D7] gi|167702955|gb|EDS17534.1| hypothetical protein CLORAM_02329 [Clostridium ramosum DSM 1402] gi|229382318|gb|EEO32409.1| alanyl-tRNA synthetase [Coprobacillus sp. D7] Length = 869 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 333/901 (36%), Positives = 506/901 (56%), Gaps = 71/901 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF+ GH++ PS SLIP +DPTL++ N+G+ K F G P +T Sbjct: 7 NQVRKMFLDFFESKGHKVEPSHSLIPNDDPTLLWINAGVAAIKKYFDGTITPDNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+LLT E F ++ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKDAIDFAWELLTDEKWFAFEK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LYITV+D DEEA+ W + G++ D +++ T NFW + E GPCGP SEIF+D+GE Sbjct: 123 DKLYITVHDHDEEAYDYWVNVKGVAVDHMLK--TPGNFWEIGE-GPCGPDSEIFYDRGEK 179 Query: 183 I-PGGLPGS----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 P GL E +RYIEIWNLVF Q+ Q +++ LP+ +IDTGMGLER+ Sbjct: 180 YDPDGLGTKLFYEELENDRYIEIWNLVFSQYNSQEGVAREDYKELPQKNIDTGMGLERIT 239 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +++Q N+D D F +I E++ + Y+ N + +RVI DH+R+ +F +ADG L N Sbjct: 240 SIIQGGETNFDTDFFLPIIHEVEKLANVSYQENKMA-YRVIADHIRTVTFALADGALFDN 298 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GRGYVLRRI+RRA+ Y + +G + M L+ + M Y L + I + ++ E Sbjct: 299 AGRGYVLRRILRRAVRYGKQIGIEKAFMYDLVDVVSEIMKEFYDYLPEKVSYISDLVKKE 358 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E F KTL G LL +++ D +++G AFKLYDT+G P ++ +I L +D Sbjct: 359 EEAFHKTLTNGEKLLSSIIAK-NTDGVISGKDAFKLYDTYGFPFELTLEIAEESDLK-VD 416 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F L+ Q+ R+R S ++K + +DL ++ Sbjct: 417 EEAFRAELKVQQERSRGARTDSESMASQK-----------PDLMAFDLPSNFEY------ 459 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 D TN ++S+V + + G V+ EV+FD T FYAE GGQ DTG Sbjct: 460 --------DPTN-INSVVIGLFKDG--VKTDRIDDYGEVIFDTTTFYAEMGGQCADTGYV 508 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + + ++ +V K +H ++ G +R L L +D R ++ NHSATH+L Sbjct: 509 YNENCQGEVINVLKAPNQQHLHFVKLKTGTIRVGDILTLDVDKAKRNKIIANHSATHILQ 568 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL I+G H++Q GS + LRFD TH + IT+ +LK IE+ VN++I + V M Sbjct: 569 AALKEIIGKHINQAGSYVDDHRLRFDFTHFEKITNEQLKLIENQVNNVIFDGVAVDIAHM 628 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 +++AI SGA AL KY D+VRVVS+ G +S LCGG HVS++ I L I +E Sbjct: 629 TKDEAINSGAMALFDEKYGDKVRVVSI-----GDYSMELCGGCHVSNSANIGLFKIEAEE 683 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQLI 773 S+ +G+RRIEA+TG+ A L+ + E + +++ LK+ ++ VV +V + EE L Sbjct: 684 SVGSGVRRIEAVTGKTAYQALVQEKETVDIISNILKLKNRKEVVAKVTALTEE-----LS 738 Query: 774 HAKRKL-----QLNVEDLS--CHKIADVNFMSHIISE--VDSKELKSVMDALQKKIQSGI 824 + K+++ QLN + + + I ++N + + E +D+ + K + + KI+ GI Sbjct: 739 NTKKEIEILSGQLNALNAASKANDIQEINGVKVLFVEEMIDAAKAKQLAFDFRDKIEEGI 798 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++LV E K S + VT++ + + A D+ + V+ G GGG+P AQ G P + Sbjct: 799 VILV-TQFEDKCSYFVGVTKNYVATGYKAGDIIKKINAVV-DGRGGGKPDFAQGGCPIND 856 Query: 884 K 884 K Sbjct: 857 K 857 >gi|145220398|ref|YP_001131107.1| alanyl-tRNA synthetase [Prosthecochloris vibrioformis DSM 265] gi|145206562|gb|ABP37605.1| alanyl-tRNA synthetase [Chlorobium phaeovibrioides DSM 265] Length = 893 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 326/871 (37%), Positives = 486/871 (55%), Gaps = 79/871 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +FL+FF H ++ S+ +IP +DPTL+FTN+GM FK++F + Y Sbjct: 12 SDIRQSFLDFFVGKSHAIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRSYSRAADT 71 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+KE AI AW+LLT + L + R Sbjct: 72 QKCIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAITWAWELLTVVWKLPEER 131 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY TVY +D+E+F++W++ + + D I+R DNFW M ETGPCGPCSEI D P Sbjct: 132 LYATVYHDDDESFRIWEEKTSIRPDHILRFGDKDNFWEMGETGPCGPCSEIHID---LTP 188 Query: 185 GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G + + + + IE+WNLVF+Q+++Q LP+ +DTGMG ER+ V+Q K++ Sbjct: 189 DGSGRALVNADDPQAIELWNLVFIQYDRQVDGRLEPLPQRHVDTGMGFERVCAVMQGKSS 248 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 NYD D+F+ L ++TG++Y + + RVI DH R+ SF ++DG +P+NEGRG Sbjct: 249 NYDTDVFRPLFDTITELTGVEYGASMHDPQDIAMRVIADHARTLSFALSDGAMPSNEGRG 308 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ YA+ LGY +P++ L+ + MG +PEL + + +++E+E F Sbjct: 309 YVLRRILRRALRYAKDLGYNKPILHRLVATVADSMGDVFPELRDRQDAVARIVKAEEESF 368 Query: 359 GKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 TLDRG+ + +G++ + + L G+ AFKLYDT+G P D+ + + + GL +D Sbjct: 369 LVTLDRGIEIFNGLVGKVRGEGSSTLEGEDAFKLYDTYGFPFDLTRLMASSAGLQ-VDGE 427 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + ++EQ++RAR G E+ WFS AT+F GYD L D Sbjct: 428 GFERCMQEQKTRARQDRREKQRGGAEEGSWEWFS---DLHATEFTGYDGLEA------DA 478 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 ++ G+S K ++ +V D+TPFYAE+GGQ GD G Sbjct: 479 SII----------GISRSKKNLL----------------LVLDRTPFYAESGGQTGDRGW 512 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS-------------LVLTIDYQNR 580 RL++TD QK + FVH +V R S + ++D + R Sbjct: 513 IETGEYRLEVTDTQKDGDS-FVH--VVTRAFDNVRDSEADPADIAVGPGRVHASVDRKLR 569 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NH+ATHLLH L LG+HV Q GS + P+ LRFD +H +T E+ ++E VN Sbjct: 570 QATERNHTATHLLHAVLRHTLGAHVQQKGSLVNPERLRFDFSHFSKLTPEEIDAVESAVN 629 Query: 641 DIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 D I Q + + +DAI GA A G KY D VRVV + G+ S LCGGTHV Sbjct: 630 DCIRQAEATLKHADVPYDDAITKGALAFFGDKYADLVRVVEIP----GI-SVELCGGTHV 684 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVG 758 + G+I L IV ESS+ AG+RRIEA+TG+ A + + +L + LK+ ++ Sbjct: 685 DNVGQIGLFKIVGESSVAAGVRRIEALTGRAAEELMWNEYRELHDVRQLLKMKAEEPPAE 744 Query: 759 RVEEIWEEYRKLQLIHAKRK-----LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813 +V I EE R L+ A+ K ++L + + + ++ ++ D++ L+ Sbjct: 745 KVAAILEERRALEKQLAELKAEVLLVKLQGDASALEDVCGCRIVARVVDGADAEGLRYAA 804 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTE 844 L+++ +L S E K S+ ++ Sbjct: 805 QMLRQQFPLSAGLLCS-SAEGKVSLAAFASD 834 >gi|312870710|ref|ZP_07730817.1| alanine--tRNA ligase [Lactobacillus iners LEAF 3008A-a] gi|311093722|gb|EFQ52059.1| alanine--tRNA ligase [Lactobacillus iners LEAF 3008A-a] Length = 877 Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust. Identities = 344/903 (38%), Positives = 517/903 (57%), Gaps = 73/903 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +I+ +E+++ G +Y + V ++I DH+R+ SF IADG LP Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E+ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RF +TL GL LLD ++S K L+G AFKL+DT+G P ++ + GL Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A +D F+ ++ Q+ RAR L S G+ + ++K++ + F + L Sbjct: 418 A-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +ED L IV ++V++ V+G++ ++FD+TPFYAE GGQ+ Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G L + DVQ +H + + + E VL +D Q RR L NH Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I + Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I + Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762 L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K + Q VV + Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 + EE + ++ + ++ Q DL+ I D+N + I VD +L+ + D + + Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKNQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G + KA++LI + + + A DL +++A + GGGGGGRP+MAQ+G Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859 Query: 879 GPN 881 G N Sbjct: 860 GKN 862 >gi|270292493|ref|ZP_06198704.1| alanine--tRNA ligase [Streptococcus sp. M143] gi|270278472|gb|EFA24318.1| alanine--tRNA ligase [Streptococcus sp. M143] Length = 872 Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust. Identities = 347/925 (37%), Positives = 504/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + + E+ EAVS ++F +TP Sbjct: 469 ----------------------------PSKLVAIVAENAEV--EAVSEGTASLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + +TDVQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEV-LAPLALNAEYTLEIDT 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE Sbjct: 558 DRRLRVMKNHTATHLLHAALHNILGRHATQAGSLNEVEFLRFDFTHFQAVTVEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQLKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGYRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-NGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLEAVAGKL 872 >gi|229496595|ref|ZP_04390309.1| alanyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406] gi|229316492|gb|EEN82411.1| alanyl-tRNA synthetase [Porphyromonas endodontalis ATCC 35406] Length = 873 Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust. Identities = 331/910 (36%), Positives = 487/910 (53%), Gaps = 73/910 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR F+ FF + H ++PS+ ++ DPTLMFTN+GM FK+I G + Y + Sbjct: 2 TANEIRAAFVAFFAEKQHHIVPSAPMVVKGDPTLMFTNAGMNQFKDIILGNVEAKYPRIA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L + + Sbjct: 62 DAQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAISWAWEFLHERLGIPA 121 Query: 123 RRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 RLY T++ + D EA W + L ++I+ DNFW M ETGPCGPCSE Sbjct: 122 DRLYATIFEGAESDGSERDNEAASYWGRF--LPQERILDGNKKDNFWEMGETGPCGPCSE 179 Query: 175 IFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 I D+ G + + + +EIWNLVFMQ+ + +LP IDTGMG Sbjct: 180 IHIDLRSDEERMQQSGRELVNRDHPQVVEIWNLVFMQYNRMADGSLSLLPHKVIDTGMGF 239 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+ +Q K +NYD D+F+ LI A Q++G+ Y E ++ V RV+ DH+R+ +F I D Sbjct: 240 ERLCMAMQGKRSNYDTDVFQPLIGAVAQLSGIPYGKEESSDVAMRVVADHVRTIAFAITD 299 Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 G LP+N GYV+RRI+RRA+ Y LG E M LLP L MG AYPELI + LI Sbjct: 300 GQLPSNAKAGYVIRRILRRAVRYGYTFLGRREAFMYALLPTLIESMGGAYPELIAQRELI 359 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 ++ +R E+E F +TL+ G+ LLD + LG L+G AF LYDT G PLD+ + IL Sbjct: 360 QKVMREEEESFLRTLEAGIKLLDKKIEELGNKGQLSGHDAFVLYDTFGFPLDLTELILRE 419 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F++ + EQ++RAR+ + W +L E G T F+GYD Sbjct: 420 HGMT-LDQKGFDREMAEQKARARS-----AAQLETDDWVTLAE--GETLFVGYDQTEADC 471 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + R V + +VV TPFYAE GGQ Sbjct: 472 SILRYRHVKQKNKDF----------------------------YQVVLSATPFYAEMGGQ 503 Query: 528 LGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 +GD+G + +G+R I D K+ + VH ++ + + ID + RR N Sbjct: 504 VGDSGILVDEEGMRYAIVDT-KRENNLPVH--LMPKLPNDPGQTFRAEIDQERRRMAEAN 560 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL +LG HV Q GS ++P+ LRFD +H +T E++ +E+ V + + Sbjct: 561 HTATHLLHQALRMVLGEHVEQKGSFVSPEVLRFDFSHYNKLTPEEIRQVEELVTQAVRAD 620 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 P R + +A A GA AL G KY + VRV+ S LCGGTHV STG I Sbjct: 621 YPREEHRNIPIAEARAMGAMALFGEKYGEEVRVMKYGT------SIELCGGTHVPSTGMI 674 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 IVSESSI AG+RRIEA+T A + L Q++ LK + + L + +VV ++++ Sbjct: 675 GAFRIVSESSIAAGVRRIEAVTATNAEAFLYKQEDTLKEIKALLN-NTPDVVKALQKLLS 733 Query: 766 E----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKI 820 E +L + ++L E L+ I + ++ E + +K + L+ ++ Sbjct: 734 EESALKSELDTLQRSHAIRLKKELLAS-SIERSGYRLFVLQGEEKADIIKDIAFQLRGEL 792 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 Q + + ++ + + ++++E+ + +A +L + +A+++ GGGGG+PH A +GG Sbjct: 793 QEPFVFVAATTEGARGLLSVMLSEEAVTLGLHAGNLVKEAARLI-QGGGGGQPHFATAGG 851 Query: 880 PNGNKADQAI 889 + N QA+ Sbjct: 852 KDANGLPQAL 861 >gi|254527157|ref|ZP_05139209.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202] gi|221538581|gb|EEE41034.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9202] Length = 886 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 335/915 (36%), Positives = 527/915 (57%), Gaps = 74/915 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+F+ + H+++PS+SL+P +DPT+M T +GM+PFK +F G +E+P +A T+ Q Sbjct: 15 IRNAFLKFYSEKFHKIIPSASLVP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVG T RHHTFFEMLGNFSFG YFK AIQ AW+L+TK + L + Sbjct: 73 KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTKIYKLSSDNI 128 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++V+ EDEE+ K+W++ G++ D+I+++ DNFWS +TGPCGPCSE+++D Sbjct: 129 IVSVFHEDEESEKIWREEIGINPDRIVKLGEKDNFWSSGKTGPCGPCSELYYDFNP--EK 186 Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 GL E+G+R+IE +NLVFMQ + + + L +IDTGMGLERMA +LQ+K+NNY Sbjct: 187 GLKYVDLEDGDRFIEFYNLVFMQHNRDSNGKLTDLKFKNIDTGMGLERMAQILQKKSNNY 246 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + +++ + Y + ++ +++ DH R+ LI+DG+ +N GRGY+L Sbjct: 247 ETDLIFPIIKKASEISSLDYFSSDERTKISFKILGDHTRAVIHLISDGVSASNLGRGYIL 306 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG T+ + + M + YP+L LI ++ E+ RF +T Sbjct: 307 RRLLRRMVRHGRLLGITKEFLSDIASVGIKLMENYYPDLKNNNELILSEIKIEEVRFRET 366 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LLD ++S K ++ G AF+LYDT+G PL++ ++I + +DI F + Sbjct: 367 LERGEKLLDEIISSGQK--LITGFKAFELYDTYGFPLELTEEIAGENNIK-VDIEGFQRE 423 Query: 422 LEEQRSRARAHS----LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 ++ Q+ RA+A S L L +I + + T F G D L Sbjct: 424 MDAQKERAKAASSKIDLTLEGSLEREI-----DSFNKTIFNGEDCLDS------------ 466 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + ++ I V++A GQ+V++V DQT FY E+GGQ+GD G Sbjct: 467 -----------EAKIQGIFLDSNFVKKASEGQRVQIVLDQTSFYGESGGQVGDIGIICST 515 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + V +K + +F+H IV+ GIL ++ ++ R + S NH+ATHLL AL Sbjct: 516 DAEVLVDKVVRK-KNVFLHDGIVKNGILTVGQTIKTIVNPAKRARASANHTATHLLQSAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++ +VSQ GS + + LRFD SKP++ +++ +E VN I QN P+V + M + Sbjct: 575 KEVVNKNVSQKGSLVAFNKLRFDFNASKPVSEDQIRKVESLVNSWIIQNHPLVIKNMPKR 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A+ GA A+ G KY D VRVV V GV S LCGGTHV +T E+ I+SE I Sbjct: 635 EALEKGALAMFGEKYGDEVRVVDVP----GV-SMELCGGTHVKNTSELGCFKIISEEGIS 689 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 AG+RRIEA++GQ A + ++ + L+ LK + + RV + E LI+ + Sbjct: 690 AGVRRIEALSGQSAFDYFSERNFLVNKLSDLLKANPSQLFDRVNNLQSE-----LINKNK 744 Query: 778 KLQLNVEDL------SCHKIAD-VNFMSHIISEVDSKELKSVMD-ALQKKIQSG---IIM 826 ++Q +++ S H A+ VN S +++++D + S+ AL Q G +++ Sbjct: 745 EIQKMKDEIAYFKYSSLHSSAEIVNSFSILVNQIDGLDGDSLQSAALNLTSQLGNKSLVI 804 Query: 827 LVGISKEKKASVLIVVT---EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 L GI + +L VV+ E + +A L A++ GGGGG+P+ AQ+G + + Sbjct: 805 LAGIPNPENRKLLFVVSFGDEVVKIGLHAGKLINEIARIC-AGGGGGKPNFAQAGARDID 863 Query: 884 KADQAIAGVASFLKK 898 K D A+ + L+K Sbjct: 864 KLDFALDYAKNHLQK 878 >gi|159037443|ref|YP_001536696.1| alanyl-tRNA synthetase [Salinispora arenicola CNS-205] gi|205830198|sp|A8LXY8|SYA_SALAI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157916278|gb|ABV97705.1| alanyl-tRNA synthetase [Salinispora arenicola CNS-205] Length = 892 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 333/912 (36%), Positives = 498/912 (54%), Gaps = 76/912 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR +L F+ NGH ++PS+ L +DP L+F +GM+ F F GQ+ Y+ Sbjct: 2 KTAEIRRRYLAHFEANGHAVVPSAPLPAISDPNLLFVAAGMMQFVPYFLGQQTAPYKRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKC+R D+D VG+T+RH TFF+M GNFSFG YFK+ AI LAWDL TK Sbjct: 62 SVQKCLRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDEAIPLAWDLATKSVDAGG 117 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F LD R++ TVY +D+EA+++W+ + G+ AD+I+R DNFWSM GPCGPCSE+F+ Sbjct: 118 FGLDPERIWPTVYLDDDEAYEVWRSV-GVPADRIVRRGKADNFWSMGIPGPCGPCSELFY 176 Query: 178 DQGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMG 229 D+G + GG P E+ RY+E WNLVFMQFE+ K++ IL P +IDTGMG Sbjct: 177 DRGPEYGLEGG-PAVDED--RYLEFWNLVFMQFERGPGTGKEDYPILGDLPAKNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHL 279 LERMA++LQ N Y+ID + ++ + ++TG +Y + + V RV+ DH+ Sbjct: 234 LERMASILQGVDNLYEIDEVRPILDRAAELTGKRYGAHSGHVASESHPDDVRLRVVADHV 293 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPE 339 R++ LI DG+ P+NEGRGYVLRRIMRRA+ RLLG+ E M LLP M +YPE Sbjct: 294 RTALMLIGDGVTPSNEGRGYVLRRIMRRAIRSIRLLGWQERAMPELLPVARDCMSPSYPE 353 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 L I + +E++ F TL G +LD + S ++G AF+L+DT+G P Sbjct: 354 LAADFGRIADYAYAEEDAFLSTLRAGTTILDTAIAESRTAGRRAISGAQAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQ 456 +D+ +I +G+ +D F + + +QR+RA+A + +G + + ++ ++ G Sbjct: 414 IDLTLEIANEQGMQ-VDAEGFRRLMADQRARAKADAQARKTGHVDLSAYRTVLDEGGPVT 472 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 F GY + +E S V+A++ + AV G VE+V D Sbjct: 473 FTGY-----HEVSRE------------------STVRAVLGEAGPRAAAVEGDTVELVLD 509 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 TPFYAE GGQ D G G ++++ DVQ+ G+ VH A V RG +R + ID Sbjct: 510 TTPFYAEGGGQQPDLGVITVGGGQVEVLDVQQPVPGLIVHRARVLRGEVRAGETGFAEID 569 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 RR +S +H+ATHL+H + LG +Q GS P LRFD + + L+ +E Sbjct: 570 ASRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTPTGVAPSVLRDVE 629 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ + +L V + + +A GA AL G KY ++VRVV V G ++ LCGG Sbjct: 630 QQVNEALLADLEVRAFVTSLAEARRIGAMALFGEKYGEQVRVVEV-----GDYARELCGG 684 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV+ +G++ L+ I+SESSI +G+RR+EA+ G A + L + + LA +V V Sbjct: 685 THVARSGQLGLVKILSESSIGSGVRRVEALVGIDAFNFLAREHLLVARLAELYRVPSDQV 744 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL--NVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814 RVE+ + R + K + QL + +V ++++ +E + + Sbjct: 745 ADRVEQTVSQLRDAEKELEKLRAQLVLGGAAALAAQATEVRGVAYVGTEAPEGASGNDVR 804 Query: 815 ALQKKIQSGI------IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867 L ++I+ I ++ V KAS+++ V + R +A DL K G Sbjct: 805 TLAQEIRGRIDPARPAVVAVAARSNGKASLVVAVNQAARSRGLSAADL----VKAAFAGR 860 Query: 868 GGGRPHMAQSGG 879 GGG P +AQ GG Sbjct: 861 GGGSPELAQGGG 872 >gi|317124715|ref|YP_004098827.1| alanyl-tRNA synthetase [Intrasporangium calvum DSM 43043] gi|315588803|gb|ADU48100.1| alanyl-tRNA synthetase [Intrasporangium calvum DSM 43043] Length = 890 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 342/918 (37%), Positives = 517/918 (56%), Gaps = 70/918 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF+ GH ++PS+ L+ +DP L+F N+GMVPFK F GQE P Y T+V Sbjct: 4 AEIRRRWLSFFESRGHTVVPSAPLV-HDDPNLLFVNAGMVPFKPYFLGQETPPYARATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE A+ LAW+L+T + Sbjct: 63 QKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAVALAWELVTTPQSQGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D++ LY +VY ED+EA +WK+++GL D+I+R+ DN+W+M GP GPCSEI D+ Sbjct: 119 FDEKDLYASVYHEDDEAIAIWKRVAGLPDDRIVRLGKKDNYWNMGVAGPGGPCSEILIDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQ--FEQQNKQERF----ILPKMSIDTGMGLERM 233 G G E G+RY+E WNLVFMQ ++ F LPK +IDTGMGLER+ Sbjct: 179 GPEF--GADRDWEAGDRYLEFWNLVFMQDDLSAVRAKDDFDIAGPLPKRNIDTGMGLERV 236 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ID +I A+E+++G +Y N + V RV+ DH+RS+ LI DG+ Sbjct: 237 AYLLQGVDNLYEIDEVFPVIAAAEELSGRRYGANLEDDVRFRVVADHVRSALMLIGDGVT 296 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRR++RRA+ RLLG P + HLLP +M ++YPEL + I + Sbjct: 297 PGNEGRGYVLRRLIRRAVRSMRLLGVDAPTLEHLLPVSKDQMRASYPELERGFGRISQVA 356 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E++ F +TL G +LD ++ L+G AF+L+DT+G P+D+ ++ +G Sbjct: 357 YAEEDAFRRTLTAGTTILDVAVTKAKSSGSATLSGSEAFQLHDTYGFPIDLTLEMAAEQG 416 Query: 410 LAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLLRGS 466 L +D F + + EQR RA+A S + G ++ + + G +F GYD Sbjct: 417 L-NVDEAGFRRLMAEQRDRAKADARSKKMAHGDV-SVYRQVADSLGRDVEFTGYD----- 469 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 +V+ S V+ +++ GE+V A +G+++EVV D+TP YAE+GG Sbjct: 470 -------EVVS-----------DSRVRGLIRGGELVSTAHAGEEIEVVLDRTPLYAESGG 511 Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G + +G +++ DVQK G+ VH A V G T +D RR +S Sbjct: 512 QLADRGRIRLANGALIEVRDVQKPINGLIVHRATVLEGEAVTGDDAEAVVDVVRRRSVSR 571 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 H+ATH++H AL LG +Q GS +P LRFD P+ + IE VN ++ Sbjct: 572 AHTATHMVHQALREELGETATQAGSENSPGRLRFDFKAQSPVPLEAMADIEAKVNSVLLD 631 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +L V +M+ ++A GA AL G KY +RVRVVS+ G S LCGGTH G++ Sbjct: 632 DLAVTADVMSLDEARRMGALALFGEKYGERVRVVSI-----GDWSIELCGGTHALRVGQL 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 ++ ++ E+SI +G+RR+EA+ G A +HL + + L LKV + R+ I Sbjct: 687 GVVKLLGEASIGSGVRRVEALVGSDAYTHLAREAAIVGQLTDQLKVRTEELPQRIASILS 746 Query: 766 EYRKLQL-IHAKRKLQL--NVEDL--SCHKIADVNFMSHIISE-VDSKELKSVMDALQKK 819 + ++ + I A ++ Q+ L + IA V F+SH + V + +L++++ ++++ Sbjct: 747 KLKEAEKEIAAVKQAQVLGAAPGLVATARDIAGVTFVSHDAGDGVTADDLRALVLEVRRR 806 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL-----ARLSAKVLGGGGGGGRPHM 874 + + LV ++ +++V + DR L R +A+VL GGGGGG+ + Sbjct: 807 LGTDRPSLVSMAAVSNGRPIVIVATN--DRAREAGLKAGLFVRTAAQVL-GGGGGGKDDI 863 Query: 875 AQSGGPNGNKADQAIAGV 892 AQ GG + + A+ V Sbjct: 864 AQGGGTDASMVSAALGAV 881 >gi|309805990|ref|ZP_07700016.1| alanine--tRNA ligase [Lactobacillus iners LactinV 03V1-b] gi|312872876|ref|ZP_07732938.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1] gi|325913725|ref|ZP_08176086.1| alanine--tRNA ligase [Lactobacillus iners UPII 60-B] gi|308167593|gb|EFO69746.1| alanine--tRNA ligase [Lactobacillus iners LactinV 03V1-b] gi|311091610|gb|EFQ49992.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2062A-h1] gi|325476925|gb|EGC80076.1| alanine--tRNA ligase [Lactobacillus iners UPII 60-B] Length = 877 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 344/903 (38%), Positives = 517/903 (57%), Gaps = 73/903 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +I+ +E+++ G +Y + V ++I DH+R+ SF IADG LP Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E+ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RF +TL GL LLD ++S K L+G AFKL+DT+G P ++ + GL Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A +D F+ ++ Q+ RAR L S G+ + ++K++ + F + L Sbjct: 418 A-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +ED L IV ++V++ V+G++ ++FD+TPFYAE GGQ+ Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G L + DVQ +H + + + E VL +D Q RR L NH Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I + Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I + Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762 L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K + Q VV + Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 + EE + ++ + ++ Q DL+ I D+N + I VD +L+ + D + + Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G + KA++LI + + + A DL +++A + GGGGGGRP+MAQ+G Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859 Query: 879 GPN 881 G N Sbjct: 860 GKN 862 >gi|254779785|ref|YP_003057891.1| alanyl-tRNA synthetase [Helicobacter pylori B38] gi|254001697|emb|CAX29926.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Helicobacter pylori B38] Length = 847 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 335/880 (38%), Positives = 493/880 (56%), Gaps = 61/880 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FFQ GH + PS L+P ND TL+FTN+GMV FK+IFTG +P + Q Sbjct: 3 IRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L+ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++EQ R++ G + + ++ Y +F+GY+ C P Sbjct: 416 MQEQVKRSKTSWKGKQNNAD---FSAILNAYAPNEFVGYETTE------------C---P 457 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + S K I EA Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 458 AKVLGFFDSDFKEIT-------EANPNQEVWVLLEKTPFYAEGGGAIGDRGTLLKDNEEA 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + K G+ +++ + + + + D R +++ +HSATHLL AL +L Sbjct: 511 ALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + LRFD +H+K + + EL+ +ED VN I ++L M A Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHAKALNNEELEKVEDLVNAQIFKHLNSHVEHMPLNQAKD 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+R Sbjct: 629 KGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVSSGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ G+ ++++LK+ + LK +V+ + ++ E + Q K + + Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KAPVSM 737 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 DL KI VN + ++ + D KE+ +D L+ K + + M+ KE + L Sbjct: 738 ---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMV--FKKENERITLAC 789 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++ + NA A A++L GG GGGR A +GG + Sbjct: 790 GVKNAPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKD 826 >gi|116491184|ref|YP_810728.1| alanyl-tRNA synthetase [Oenococcus oeni PSU-1] gi|122276634|sp|Q04EQ9|SYA_OENOB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116091909|gb|ABJ57063.1| alanyl-tRNA synthetase [Oenococcus oeni PSU-1] Length = 885 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 334/923 (36%), Positives = 502/923 (54%), Gaps = 75/923 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N + IR FL+FFQ GH++ PS SLIP +DP+L++ NSG+ K F G P +T Sbjct: 5 NSAQIRQMFLDFFQSKGHKIEPSQSLIPQDDPSLLWINSGVATLKKYFDGSVIPDNPRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI AW+LLT + + Sbjct: 65 NAQKSIRT----NDIENVGHTARHHTFFEMLGNFSVGDYFKKEAIPWAWELLTSPEWYGI 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +L+IT Y D E +LW+ + A I +DNFW + E GP GP +E+FFD+G Sbjct: 121 EPEKLFITYYPRDTETKELWESQADFVAGHTI--PQDDNFWDIGE-GPSGPDTEVFFDRG 177 Query: 181 -----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSID 225 E PGG E ERY+EIWN+VF QF + + LP +ID Sbjct: 178 PKFQNLPDNDPEMYPGG------ENERYLEIWNIVFSQFNHLPGLTDNSKYPELPHKNID 231 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSS 283 TGMGLER+ ++ + N++ DLF +I+ EQ++G +Y + V+ +VI DH+R+ + Sbjct: 232 TGMGLERVVSIFENAPTNFETDLFLPIIRKVEQLSGKRYGKIKDEDVSFKVITDHIRAVT 291 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 F I+DG LP N GRGYV+RR++RRA+ + R L +P + L+P + M + YPE+++ Sbjct: 292 FAISDGALPGNTGRGYVIRRLLRRAVMHGRKLEIEKPFLTQLVPIVGKIMEAYYPEILEN 351 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIM 401 + I ++SE+ RF KTL GL LLD ++ KD ++G AFKL+DT+G PL+ Sbjct: 352 EDKIIPVIQSEEGRFNKTLTAGLNLLDDLIEKAHKDNATQISGKDAFKLFDTYGFPLEST 411 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGY 460 ++ GL +D SF++ +++Q++RAR L + G ++ SLK + ++G+ Sbjct: 412 EEQAADAGLT-VDTTSFDKEMKDQQNRARTAQGKLKTFGFQDEALMSLKV---PSVYVGW 467 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 ++ +D + + AI+ + V++A +GQK ++FD+TPF Sbjct: 468 -----------------KQSSVD-----DAKIAAIIVDDQQVDDAKAGQKALLIFDKTPF 505 Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE GGQ+ D G A + Q+TDVQ +H A + L+ + L +D Sbjct: 506 YAEMGGQVADQGTVQAANGKVLAQVTDVQNAPNKQHIHTAKLISD-LKIGQKVNLRLDMH 564 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 +S NH+ATHLL AL ++ ++ Q GS + PD LRFD TH P+ + L IED Sbjct: 565 RHVAVSKNHTATHLLDQALRNVIAGNIHQAGSLVEPDYLRFDFTHQGPVPTETLDRIEDL 624 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 VN IA LPV + E A GA A+ G KY +VRVVS+ G + GGTH Sbjct: 625 VNQKIADALPVSWIETDIESAKKLGAVAVFGEKYGKKVRVVSI-----GDFNKEFDGGTH 679 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVV 757 +T E+ L IVSES I AG RRIEA+TGQ A L ++ LK A FL + +V Sbjct: 680 AKNTSELGLFKIVSESGIGAGTRRIEAVTGQSAFKMLKNHEKLLKKAAEFLSAQKLADVP 739 Query: 758 GRVEEIWEEYRKLQ-LIHAKRKLQLNV-EDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815 ++ ++ + +Q + + NV D K + S+I +++D++ + + Sbjct: 740 DKIVDLQNNLKNVQKQVESLSDKAANVAADKIFEKTLEAGKYSYIAAQIDNQTVDGLRKI 799 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHM 874 + + Q + L+ I+ L+V + A ++ + +S K+ GGGGGRP Sbjct: 800 VDEWRQRAVSDLIIIATNNNGKALLVAASAKPNEVKAGNVVKAISPKI--QGGGGGRPDF 857 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 AQ+GG N A+A V+ +L+ Sbjct: 858 AQAGGKNPAGIANALASVSEYLE 880 >gi|309803595|ref|ZP_07697687.1| alanine--tRNA ligase [Lactobacillus iners LactinV 11V1-d] gi|309809661|ref|ZP_07703517.1| alanine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D] gi|312875207|ref|ZP_07735220.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2053A-b] gi|308164343|gb|EFO66598.1| alanine--tRNA ligase [Lactobacillus iners LactinV 11V1-d] gi|308170021|gb|EFO72058.1| alanine--tRNA ligase [Lactobacillus iners SPIN 2503V10-D] gi|311089314|gb|EFQ47745.1| alanine--tRNA ligase [Lactobacillus iners LEAF 2053A-b] Length = 877 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 344/903 (38%), Positives = 517/903 (57%), Gaps = 73/903 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +I+ +E+++ G +Y + V ++I DH+R+ SF IADG LP Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E+ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RF +TL GL LLD ++S K L+G AFKL+DT+G P ++ + GL Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A +D F+ ++ Q+ RAR L S G+ + ++K++ + F + L Sbjct: 418 A-VDKEEFDAEMKAQKDRARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +ED L IV ++V++ V+G++ ++FD+TPFYAE GGQ+ Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G L + DVQ +H + + + E VL +D Q RR L NH Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I + Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I + Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762 L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K + Q VV + Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 + EE + ++ + ++ Q DL+ I D+N + I VD +L+ + D + + Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G + KA++LI + + + A DL +++A + GGGGGGRP+MAQ+G Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859 Query: 879 GPN 881 G N Sbjct: 860 GKN 862 >gi|302190972|ref|ZP_07267226.1| alanyl-tRNA synthetase [Lactobacillus iners AB-1] Length = 877 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 344/903 (38%), Positives = 516/903 (57%), Gaps = 73/903 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +I+ +E+++ G +Y + V ++I DH+R+ SF IADG LP Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E+ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RF +TL GL LLD ++S K L+G AFKL+DT+G P ++ + GL Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A +D F+ + Q+ RAR L S G+ + ++K++ + F + L Sbjct: 418 A-VDKEEFDAEMRAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +ED L IV ++V++ V+G++ ++FD+TPFYAE GGQ+ Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G L + DVQ +H + + + E VL +D Q RR L NH Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I + Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I + Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762 L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K + Q VV + Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 + EE + ++ + ++ Q DL+ I D+N + I VD +L+ + D + + Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G + KA++LI + + + A DL +++A + GGGGGGRP+MAQ+G Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859 Query: 879 GPN 881 G N Sbjct: 860 GKN 862 >gi|227499550|ref|ZP_03929657.1| alanine--tRNA ligase [Anaerococcus tetradius ATCC 35098] gi|227218309|gb|EEI83563.1| alanine--tRNA ligase [Anaerococcus tetradius ATCC 35098] Length = 870 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 324/908 (35%), Positives = 507/908 (55%), Gaps = 58/908 (6%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 ++ +R+ +L FF K GH LL S LIP +D +L+ N+GM P K FTG++K T Sbjct: 6 MNELRSKYLNFFGNKKGHTLLKSFPLIPIDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKCVR D++ VG+T RH TFFEMLGNFSFG YFK+ AI A++ LTKE ++ + Sbjct: 66 SSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAISWAYEFLTKELEISK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 L++TV+ ED+EA+ +W + G+++++I+R DNFW + E GPCGPCSEIF D+G Sbjct: 122 DDLWVTVFKEDDEAYNIWHEHIGIASERILREGKEDNFWEL-EVGPCGPCSEIFVDRGAD 180 Query: 181 ECIP--GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 I PG ++ +R++E+WNLVF QF + + L +IDTGMGLER+A VLQ Sbjct: 181 RAIDENDNKPG-NDNSDRFMEVWNLVFTQFNKDAQGNYTPLSHPNIDTGMGLERIAMVLQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 K N +++D+ +I E++ KY+ N + V+ RVI DH ++ +FL+ DG++P+NE Sbjct: 240 NKDNIFEVDVMAAIISEIEKLANKKYKENKKDDVSIRVIADHSKAMTFLVCDGVIPSNEK 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + +LLG + ++ + Y EL + I++ +R E+E Sbjct: 300 RGYVLRRLIRRAYRHGKLLGIDGEFLTKIVDKVIDTYKVEYDELETNRDKIKDIIRDEEE 359 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF KT+D+GL L+ ++ + + ++L+G AFKLYDT+G PLD+ ++IL + L +D Sbjct: 360 RFQKTIDQGLERLNSLIDAIERVHGKLLDGKEAFKLYDTYGFPLDLTKEILEEKDL-DVD 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +FN ++ Q+ AR + + I + T+FIGYD L Sbjct: 419 EKTFNDQMQIQKQTARDARKKDAGWSLDNI---NTDGLAKTEFIGYDKL----------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + + I ++ G ++ D+T FYAEAGG++ DTG Sbjct: 465 ------------AIEAEILDIFEENSEASSISEGNNGIIISDKTSFYAEAGGEVADTGII 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + R ++ DVQK+ + I+ H+ V G + +D R + NHSATHLL Sbjct: 513 FNNSFRAKVIDVQKQKD-IYFHYVEVLSGEITKGQIATFEVDRDRRFDIQRNHSATHLLD 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG + Q GS + LRFD +++K +T E+K +ED VN IA+ V I+ Sbjct: 572 QALRDVLGEGIKQAGSLVDEYKLRFDFSYNKAMTKEEIKEVEDIVNRQIAKQELVTKEIV 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + + GA L KY D+VRVVS+ G +S LCGG HV+ T +I++ I E+ Sbjct: 632 DYKQSQQMGAIGLFEDKYKDKVRVVSM-----GDYSKELCGGCHVNYTSDILMFKINQET 686 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEA+TG++A L + LK +AS L + ++ R+E + E + Sbjct: 687 SVSAGVRRIEAVTGRKAYELLTKSENSLKVIASKLNTNVSTIINRIESLENEIENYKKDI 746 Query: 775 AKRKLQLNVEDLSCHKIADV------NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ K N D+ ADV N + V EL+ + ++ + II+ Sbjct: 747 SRLKSN-NSSDIVNELKADVKEIKGINLLVKKFDNVPMDELRDYENRIKNSFDNLIIVFA 805 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S K + V ++L +++NA + R A++ GG GGG+ + AQ+GG N +K D+A Sbjct: 806 SVS--DKIVFTVSVDDNLTNKYNAGKIVREIAQIT-GGNGGGKKNFAQAGGKNISKLDEA 862 Query: 889 IAGVASFL 896 + V+ + Sbjct: 863 LKKVSEII 870 >gi|110802307|ref|YP_699065.1| alanyl-tRNA synthetase [Clostridium perfringens SM101] gi|122956614|sp|Q0SS42|SYA_CLOPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110682808|gb|ABG86178.1| alanine--tRNA ligase [Clostridium perfringens SM101] Length = 879 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 342/905 (37%), Positives = 520/905 (57%), Gaps = 64/905 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + +TT Sbjct: 7 NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + + + Sbjct: 67 QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181 Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + L S + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGRG Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ERF Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEERF 359 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D G+ +L +S + + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418 Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +FN+ ++EQR RAR + +G K+ S+ T+F GY L Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++S V + E E G++ ++ D+TPFYAE GGQ+GD Sbjct: 467 ----------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDR 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +TD +K G FVH+ V G L+ + L++D R + NH+ATH Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH AL ILG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T Sbjct: 571 MLHEALKEILGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M+ ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IV Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769 SES + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826 ++ K KL ED ++N + + +E VD L+ + D ++ K+ +GI++ Sbjct: 746 KEIAELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884 L K +++ + T++ L N V ++ + GGGGGGRP MAQ+GG N Sbjct: 806 LAS-DNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862 Query: 885 ADQAI 889 +A+ Sbjct: 863 IAKAL 867 >gi|322376246|ref|ZP_08050739.1| alanine--tRNA ligase [Streptococcus sp. M334] gi|321282053|gb|EFX59060.1| alanine--tRNA ligase [Streptococcus sp. M334] Length = 872 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 350/926 (37%), Positives = 511/926 (55%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--KDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I + Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESRFNYEASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQ--ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + + ++ +T+VQK G +H V L LTID Sbjct: 498 PFYAEMGGQVADHGQILDESGKVVAIVTNVQKAPNGQALHTVEV-LAPLALNQEYTLTID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K + +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|182625718|ref|ZP_02953487.1| alanyl-tRNA synthetase [Clostridium perfringens D str. JGS1721] gi|177909120|gb|EDT71595.1| alanyl-tRNA synthetase [Clostridium perfringens D str. JGS1721] Length = 879 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 341/905 (37%), Positives = 520/905 (57%), Gaps = 64/905 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + +TT Sbjct: 7 NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + + + Sbjct: 67 QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181 Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + L S + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGRG Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ERF Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKVIKLEEERF 359 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D G+ +L +S + + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418 Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +FN+ ++EQR RAR + +G K+ S+ T+F GY L Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++S V + E E G++ ++ D+TPFYAE GGQ+GD Sbjct: 467 ----------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDR 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +TD +K G FVH+ V G L+ + L++D R + NH+ATH Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M+ ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IV Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769 SES + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826 ++ K KL ED ++N + + +E VD L+ + D ++ K+ +GI++ Sbjct: 746 KEIAELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884 L K +++ + T++ L N V ++ + GGGGGGRP MAQ+GG N Sbjct: 806 LAS-DNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862 Query: 885 ADQAI 889 +A+ Sbjct: 863 IAKAL 867 >gi|116333833|ref|YP_795360.1| alanyl-tRNA synthetase [Lactobacillus brevis ATCC 367] gi|122269480|sp|Q03R43|SYA_LACBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116099180|gb|ABJ64329.1| alanyl-tRNA synthetase [Lactobacillus brevis ATCC 367] Length = 879 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 338/926 (36%), Positives = 504/926 (54%), Gaps = 91/926 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF+ GH + PS+SL+P +DP+L++ NSG+ K F+GQ P +T+ Sbjct: 7 SQIRQMYLDFFKSKGHTIEPSASLVPKDDPSLLWINSGVATMKKYFSGQVVPENPRLTSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ AI AW+LLT F D Sbjct: 67 QKSIRT----NDIENVGKTARHHTLFEMLGNFSVGDYFKKEAIAWAWELLTSPDWFGWDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D +A W+ + G++ D II + DNFW + E GP GP SEIF+D+GE Sbjct: 123 DKLYMTVYPKDTDAKDAWEAV-GVAPDHIIAV--EDNFWDIGE-GPSGPDSEIFYDRGEA 178 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+E+WN+VF QF + LP+ +IDTGMGLER+ + Sbjct: 179 FNNLAADDPENYPGG--ENERYLEVWNIVFSQFNHEPDGTYKPLPRKNIDTGMGLERVVS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292 + Q N++ DLF LI+ + ++ K+ G N ++ +VI DH R+ +F I DG LP Sbjct: 237 IFQNAKTNFETDLFMPLIEKTAALSAGKHYGANAEDDISFKVIADHARAITFAIGDGALP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYV+RR++RRA+ + LG + L+P + M + YPE+++ I + +R Sbjct: 297 GNEGRGYVIRRLIRRAIVNGQKLGIEGAFLDQLVPVVGQIMQAYYPEVLEQSDYIAKVVR 356 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 SE++RFG+TL GL LL+ +++ L G ++I D AFKLYDT+G P+++ ++ +G Sbjct: 357 SEEDRFGETLTDGLNLLNSLIADLKQQGGNQIAGAD-AFKLYDTYGFPVELTEEYADDQG 415 Query: 410 LAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 + +D F +++Q+ RAR A G + ++K ++++GY L Sbjct: 416 IT-VDEAGFKAEMQKQKDRARNARGKQKAMGLQHDLLINVKTP---SEYVGYTQL----- 466 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 +S + +V E+V+ SG E +FD TPFYAE GGQ+ Sbjct: 467 ------------------ATTSKLTVLVAGDELVDHVTSG-TAEAMFDVTPFYAEMGGQV 507 Query: 529 GDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G + + + + DVQ G +H V + T + L +D ++ N Sbjct: 508 ADKGDILDEAGHVVAHVADVQHAPNGQNLHTLTV-VAPMETGATYQLKVDTIFHSKVEKN 566 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLL AL + G H Q GS + D LRFD TH + A+L E VN I + Sbjct: 567 HTATHLLDKALREVFGEHTQQAGSLVEGDYLRFDFTHFGQVDPADLAKAEALVNQKIFEE 626 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 LPV T + E A GA AL KY VRVVS G + CGG HV +T EI Sbjct: 627 LPVTTVETDIESAKKMGAIALFSEKYGKVVRVVSA-----GDFVTEFCGGNHVKNTNEIG 681 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L I SES + AG+RRIEA+T A ++L DE L ++ + LKV+Q V+EI ++ Sbjct: 682 LFKITSESGVGAGVRRIEAVTSAAAYAYLHDHDEILNAVGADLKVTQ------VDEIEQK 735 Query: 767 YRKLQL-IHAKRKLQLNVEDLSCHKIADVNFMSHI--------------ISEVDSKELKS 811 + LQ + A + Q +E + A F H+ +S++D +L++ Sbjct: 736 VQALQAQVKALEQQQATLEGKLASQEAGAVF-DHVTTAGNYQLISGTVQVSKMD--QLRA 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGG 870 + D + + S +++L G KA++++ V+ D + A DL + +S K+ GGGGG Sbjct: 793 LADTWRDQALSDVLVL-GAEVNGKANLIVAVSADKQKQVKAGDLIKAISPKI--NGGGGG 849 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 RP++AQ+GG N A+ A +L Sbjct: 850 RPNLAQAGGKNPAGLPDAMTAAADWL 875 >gi|284929441|ref|YP_003421963.1| alanyl-tRNA synthetase [cyanobacterium UCYN-A] gi|284809885|gb|ADB95582.1| alanyl-tRNA synthetase [cyanobacterium UCYN-A] Length = 880 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 334/910 (36%), Positives = 520/910 (57%), Gaps = 77/910 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL F++ H++ PS+SLIP DPT++ T +GM+PFK IF GQEK + +TT Sbjct: 11 NEIRDKFLHFYKGKKHQIFPSASLIP-RDPTVLLTIAGMLPFKPIFLGQEKSSFSRITTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND+DNVG T RHHTFFEMLGNFSFG YFKE++I+ AW+L T+ F L Sbjct: 70 QKCIRT----NDIDNVGYTARHHTFFEMLGNFSFGDYFKEQSIRWAWELSTQIFLLPPES 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 + ++V++ D+EAF +W+ I G+ +IIR+ DNFW +TGPCGPCSE+++D + Sbjct: 126 IVVSVFESDDEAFNIWENIIGIPQTRIIRMGEKDNFWKAGKTGPCGPCSELYYDFHPEL- 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G + E+ R+IE +NLVFM++ + F L K +IDTGMGLERMA +LQ+ NNY Sbjct: 185 GEQNLNLEDDSRFIEFYNLVFMEYSRDENGNLFPLGKKNIDTGMGLERMAQILQKVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I++ + ++Y E N + ++I DH+R+ +IADGI +N RGYVL Sbjct: 245 ETDLIFPIIESILNIIAIEYRHAEENTKKSLKIIGDHIRAVIHMIADGITASNTDRGYVL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RR + + RL+G + + +YPE+ + ++ I + L E++ F KT Sbjct: 305 RRIIRRIIRHGRLIGIEGKFINKIAQTAIQISEKSYPEVREKEIFISKELSKEEDIFLKT 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL ++ + K ++G AF LYDT+G PL++ Q+I L ++I F + Sbjct: 365 LERGEKLLCEIIDNTIKPNQISGLDAFILYDTYGFPLELTQEIAEESQLK-VNIDEFYEQ 423 Query: 422 LEEQRSRARAH----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 ++ Q+ R++A +L LG + I AT+F GY Sbjct: 424 MKLQQCRSKAAHENINLSLGYEINKLI-----SDVDATKFTGYS---------------- 462 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 DL + V +VK I+ ++V++A G V+++ D TPFYAE+GGQ+ D G +G Sbjct: 463 -----DLNSSV--VVKKILVNQKVVQQAEKGNNVQIILDSTPFYAESGGQVSDHGYLVGH 515 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++I D+QK++E +F+H+ +E G L T +L +D R+ + +NH++THLL AL Sbjct: 516 KSFIRINDIQKESE-VFIHYGKIEEGYLLTNETLDAVVDNNYRQCIKLNHTSTHLLQAAL 574 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 L S ++Q GS +T D LRFD + IT +++ IE+ VN I++ V M+ + Sbjct: 575 RKNLDSSITQAGSLVTFDRLRFDFQYPHQITIEQIEQIENTVNFWISEKHDVSIENMSLK 634 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA A+ G KY++ VRV+ + S LCGGTHV++ EI L I+S++ I Sbjct: 635 VAKEKGAIAMFGEKYSEEVRVIDIPE-----ISMELCGGTHVNNIAEIGLFKIISQTGIS 689 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEAITG +L +D +K+L KV + R+ + + + Q + Sbjct: 690 SGVRRIEAITGSAILEYLKVKDSIVKNLCEHFKVKPEEIQKRIISLQTDLKDTQ-----K 744 Query: 778 KLQLNVEDLS---CHKIADV-----NFMSHIIS---EVDSKELKSVMDALQKKIQSGIIM 826 +L++ ++L+ K+ D+ N + I+S VD K L+ + LQ K+ G ++ Sbjct: 745 QLEIVQQELAMVKSDKLLDIAESLDNDLKIIVSNVGNVDKKALQHSAERLQNKLGEGAVV 804 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA-KVLG------GGGGGGRPHMAQSGG 879 L K S++ ++ + N LSA K +G GGGGGRP++AQ+GG Sbjct: 805 LGATLPGNKVSLVASFSKKIYKDKN------LSAGKFIGEIAQICEGGGGGRPNLAQAGG 858 Query: 880 PNGNKADQAI 889 + +K ++A+ Sbjct: 859 KDASKLEEAL 868 >gi|259501304|ref|ZP_05744206.1| alanine-tRNA ligase [Lactobacillus iners DSM 13335] gi|259167274|gb|EEW51769.1| alanine-tRNA ligase [Lactobacillus iners DSM 13335] Length = 906 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 344/903 (38%), Positives = 516/903 (57%), Gaps = 73/903 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 36 SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 95 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K LD Sbjct: 96 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 151 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 152 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 208 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 209 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 266 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +I+ +E+++ G +Y + V ++I DH+R+ SF IADG LP Sbjct: 267 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 326 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E+ ++ Sbjct: 327 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 386 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RF +TL GL LLD ++S K L+G AFKL+DT+G P ++ + GL Sbjct: 387 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 446 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A +D F+ + Q+ RAR L S G+ + ++K++ + F + L Sbjct: 447 A-VDKEEFDAEMRAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 495 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +ED L IV ++V++ V+G++ ++FD+TPFYAE GGQ+ Sbjct: 496 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 538 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G L + DVQ +H + + + E VL +D Q RR L NH Sbjct: 539 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 597 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I + Sbjct: 598 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 657 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I + Sbjct: 658 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 712 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762 L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K + Q VV + Sbjct: 713 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 772 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 + EE + ++ + ++ Q DL+ I D+N + I VD +L+ + D + + Sbjct: 773 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 830 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G + KA++LI + + + A DL +++A + GGGGGGRP+MAQ+G Sbjct: 831 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 888 Query: 879 GPN 881 G N Sbjct: 889 GKN 891 >gi|309805316|ref|ZP_07699367.1| alanine--tRNA ligase [Lactobacillus iners LactinV 09V1-c] gi|308165392|gb|EFO67624.1| alanine--tRNA ligase [Lactobacillus iners LactinV 09V1-c] Length = 877 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 344/903 (38%), Positives = 517/903 (57%), Gaps = 73/903 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDIDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +I+ +E+++ G +Y + V ++I DH+R+ SF IADG LP Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E+ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RF +TL GL LLD ++S K L+G AFKL+DT+G P ++ + GL Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 A +D F+ ++ Q+ RAR L S G+ + ++K++ + F + L Sbjct: 418 A-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +ED L IV ++V++ V+G++ ++FD+TPFYAE GGQ+ Sbjct: 467 QEDHAKLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G L + DVQ +H + + + E VL +D Q RR L NH Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I + Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I + Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762 L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K + Q VV + Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 + EE + ++ + ++ Q DL+ I D+N + I VD +L+ + D + + Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKNQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G + KA++LI + + + A DL +++A + GGGGGGRP+MAQ+G Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859 Query: 879 GPN 881 G N Sbjct: 860 GKN 862 >gi|110799076|ref|YP_696466.1| alanyl-tRNA synthetase [Clostridium perfringens ATCC 13124] gi|168211405|ref|ZP_02637030.1| alanyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626] gi|123148653|sp|Q0TPH4|SYA_CLOP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110673723|gb|ABG82710.1| alanyl-tRNA synthetase [Clostridium perfringens ATCC 13124] gi|170710656|gb|EDT22838.1| alanyl-tRNA synthetase [Clostridium perfringens B str. ATCC 3626] Length = 879 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 341/905 (37%), Positives = 520/905 (57%), Gaps = 64/905 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + +TT Sbjct: 7 NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + + + Sbjct: 67 QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181 Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + L S + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGRG Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ERF Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEERF 359 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D G+ +L +S + + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418 Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +FN+ ++EQR RAR + +G K+ S+ T+F GY L Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++S V + E E G++ ++ D+TPFYAE GGQ+GD Sbjct: 467 ----------------LNSKVIVLGNNEEFKSELKEGEEGFLLTDKTPFYAEMGGQVGDR 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +TD +K G FVH+ V G L+ + L++D R + NH+ATH Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M+ ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IV Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769 SES + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826 ++ K KL ED ++N + + +E VD L+ + D ++ K+ +GI++ Sbjct: 746 KEIAELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884 L K +++ + T++ L N V ++ + GGGGGGRP MAQ+GG N Sbjct: 806 LAS-DNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862 Query: 885 ADQAI 889 +A+ Sbjct: 863 IAKAL 867 >gi|313891768|ref|ZP_07825373.1| alanine--tRNA ligase [Dialister microaerophilus UPII 345-E] gi|313119762|gb|EFR42949.1| alanine--tRNA ligase [Dialister microaerophilus UPII 345-E] Length = 869 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 314/897 (35%), Positives = 499/897 (55%), Gaps = 55/897 (6%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L FF+ K H L S LIP +DP+L+ +GM P K FTG+ +P +TT Sbjct: 4 NDIREAYLSFFEEKKNHLRLKSFPLIPKDDPSLLLIGAGMAPMKPYFTGKVEPPCHRITT 63 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+ LT+ +D+ Sbjct: 64 SQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIEWAWEFLTEVLKMDKE 119 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY+T++ +D++A+ W K G++ + I R+ DNFW + E GPCGP SEIFFDQGE Sbjct: 120 RLYVTIFPDDQDAYNYWHKNMGVAENHIYRL--EDNFWEIGE-GPCGPDSEIFFDQGESF 176 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +G+R++EIWNLVF QF++Q L K +IDTG GLER+A V+Q+K Sbjct: 177 -GTDPANQMGGDGDRFLEIWNLVFSQFDRQKDGTYLPLVKKNIDTGAGLERLAAVMQQKK 235 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NN++ DLF +I + +++G Y + ++ V +VI DH R+ + +I+DG+LP+NEGRGY Sbjct: 236 NNFESDLFFPIISEASKLSGAVYGVKESDDVALKVISDHARAITNMISDGVLPSNEGRGY 295 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA+ + +L+G + M ++ + M YPEL + + I++ E+ERF Sbjct: 296 VLRRVLRRAIRFGKLIGIEKQFMGRMIDVVVDMMKPEYPELYEKRDFIKKVASVEEERFQ 355 Query: 360 KTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL+ G LL ++ K I L+G+ FKLYDT+G P ++ +I G++ ID Sbjct: 356 STLNAGTELLSEMIEDSKKKHINKLSGEYVFKLYDTYGFPWELTDEIAKEEGMS-IDKEG 414 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F ++ +Q+ RAR + + +K + D L Sbjct: 415 FIISMNKQKERARNARVKI----------------------------SAKVLTPDTTKLD 446 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 K V + + + + GE + A G+ + V+ PF+AE GGQ+GD G Sbjct: 447 AKNLTVKDEDVDTTIVMLGKNGEEIVSATDGEDLVVILKNNPFHAEGGGQMGDIGILRNS 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ + +K +GI + G + + + +D R L+ NH+ THLLH AL Sbjct: 507 SGVFEVHNTKKLPDGIVYLIGTITEGKISVNDMVEVKVDRVRRAALAKNHTGTHLLHAAL 566 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG +Q GS + PD LRFD T ++P+T+ ++ +E VN+ I +L + T+ + E Sbjct: 567 RQVLGKQATQAGSLVAPDHLRFDFTWNEPLTAKQINDVEKLVNEKILGSLTLTTKEVPLE 626 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A +GA AL G KY VR+V + G S LCGG+H +TGE+ I+SES I Sbjct: 627 EARKAGALALFGEKYGKIVRMVRI-----GDFSLELCGGSHTHTTGEVGSFRIISESGIG 681 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQL 772 +G+RRI A+TG A ++ + +++ A LK + ++ +++++ + +K ++L Sbjct: 682 SGLRRIVALTGISAYEAMVNDRKLIENSAVLLKCKKEEILNKIDKLNGDLKKAEHDIIKL 741 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 + + K +L+ ++F + + EL+ + D ++ K+ G +L +S Sbjct: 742 KNEQAKGELSSLMSDIKNKNGISFFASTAHADNINELRKIADMIKDKLPKGAFVLSSVSN 801 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 K V + E + + + AK+ GGGGG+P +AQ+GG + +K + AI Sbjct: 802 GKVNFVGMASKEAVEAGIHMGKVVSQVAKIC-NGGGGGKPTVAQAGGKDISKVEDAI 857 >gi|291530562|emb|CBK96147.1| alanyl-tRNA synthetase [Eubacterium siraeum 70/3] Length = 878 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 332/912 (36%), Positives = 507/912 (55%), Gaps = 57/912 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R ++L+FF+ GH + S+ L+P D +++ N+GM P K F G E+P V Sbjct: 4 TGLNDLRESYLKFFESKGHLRMASAPLVPQGDNSVLLINAGMTPLKKYFQGIEEPPRHRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D+DNVG+T RH T+FEMLGNFSFG YFK A AW+ LTK ++ Sbjct: 64 TTCQKCIRT----PDIDNVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEYLTKVLEIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + RL++T+Y+ED+EA +W G+ D+II++ DNFW +GPCGPCSEI FD+GE Sbjct: 120 EDRLWVTIYEEDDEAGDIWANEVGVPRDRIIKLGKADNFWEHG-SGPCGPCSEIHFDRGE 178 Query: 182 CIPGGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G + GE R IEIWNLVF QF+ K L +IDTGMGLER+A V+Q+ Sbjct: 179 KY-GPFESFEQAGECDRIIEIWNLVFTQFDNDGKGNYTQLATKNIDTGMGLERLACVMQD 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGR 297 N +++D +++++ V G+ Y + V+ RVI DH+RS++F++ DGI P+NEGR Sbjct: 238 VDNLFEVDTIQNIMKKICSVAGVNYHDDPTTDVSIRVITDHIRSTTFMVGDGIRPSNEGR 297 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+L P + + + E +AYPEL + + I++ +++E+E Sbjct: 298 GYVLRRLLRRAARHGRMLDVNRPFLYEICDTVINENLTAYPELDEKREYIKKVIKTEEES 357 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE----ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F KT+D+G+ +L + L D+ IL+G+ FKL+DT+G P+D+ ++IL R + GI Sbjct: 358 FAKTVDKGMQILGEFIKELSADDTHKPILSGENLFKLHDTYGFPVDLTREILQERNI-GI 416 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + + EQ+++AR++ G G E +L T F+GY K + D Sbjct: 417 DEERFFELMNEQKAKARSNQAFKG-GWDEATANALSGL--TTTFVGY------KSLTADS 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 K+L A+++ GE+ + G +V VV D TPFYAE+GGQ+GD G Sbjct: 468 KIL-----------------AMIKDGEVTDVCNEGDEVTVVLDITPFYAESGGQVGDCGT 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +Q+ D +K G F+ + VE G T+ S+ +D + R + NH+ HLL Sbjct: 511 ITAGENVMQVIDTKKTGAGQFICNCHVESGCFYTDDSVKSAVDEKKRMATARNHTCAHLL 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG HV Q GS + P RFD +H +T EL+ IE VND I +PVVT Sbjct: 571 QAALRKVLGDHVHQAGSFVDPYRCRFDFSHFSAVTPEELEKIEMLVNDWILAGIPVVTEE 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E+A GA AL G KY D VRVV G S+ CGGTH+ +T + L I+SE Sbjct: 631 LPIEEARKKGAMALFGEKYGDIVRVVQ-----AGDVSTEFCGGTHLDNTAKAGLFKIISE 685 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--------NVVGRVEEIWE 765 +S+ +G+RRIEA+TG S + ++A LK++ N++ + + Sbjct: 686 TSVASGVRRIEAVTGYNVLSAYDQTKAMVTNIAQVLKIANPSAVMQKCENMMNEMHTMQA 745 Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 E +L I + +++ E + ++ + S ++S V L+ D L+ S + Sbjct: 746 EIDRLNGIISMSQMKNVTEGAT--EVNGIKVFSAMLSGVTGDSLRKAGDKLKDANDSFVA 803 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +L G+S K + I E + NA + + + GG GGG+P A +G + K Sbjct: 804 VLAGVSDGKGNFLCIASPEAVAKGANAGKIVK-EIAAIAGGKGGGKPDTAMAGIADVTKI 862 Query: 886 DQAIAGVASFLK 897 D+A+ + +K Sbjct: 863 DEALLALTDIVK 874 >gi|18310762|ref|NP_562696.1| alanyl-tRNA synthetase [Clostridium perfringens str. 13] gi|168218241|ref|ZP_02643866.1| alanyl-tRNA synthetase [Clostridium perfringens NCTC 8239] gi|20532247|sp|Q8XJH6|SYA_CLOPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|18145443|dbj|BAB81486.1| alanine-tRNA ligase [Clostridium perfringens str. 13] gi|182379737|gb|EDT77216.1| alanyl-tRNA synthetase [Clostridium perfringens NCTC 8239] Length = 879 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 341/905 (37%), Positives = 520/905 (57%), Gaps = 64/905 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + +TT Sbjct: 7 NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + + + Sbjct: 67 QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181 Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + L S + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGRG Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ERF Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEERF 359 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D G+ +L +S + + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418 Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +FN+ ++EQR RAR + +G K+ S+ T+F GY L Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++S V + E E G++ ++ D+TPFYAE GGQ+GD Sbjct: 467 ----------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDR 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +TD +K G FVH+ V G L+ + L++D R + NH+ATH Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M+ ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IV Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769 SES + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826 ++ K KL ED ++N + + +E VD L+ + D ++ K+ +GI++ Sbjct: 746 KEIAELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884 L K +++ + T++ L N V ++ + GGGGGGRP MAQ+GG N Sbjct: 806 LAS-DNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862 Query: 885 ADQAI 889 +A+ Sbjct: 863 IAKAL 867 >gi|293400450|ref|ZP_06644595.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305476|gb|EFE46720.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 893 Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust. Identities = 349/912 (38%), Positives = 515/912 (56%), Gaps = 69/912 (7%) Query: 1 MSNVS--SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N++ IR FL++F+K+GH + P +SLIP NDPTL++ N+G+ K F G KP Sbjct: 20 MKNLTGNQIRQLFLDYFKKHGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGTVKPEC 79 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT E Sbjct: 80 PRIANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHFAWEFLTSEE 135 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D+ RLYITVY +DEEA+ +W G+ I++ T DNFW + E GPCGP +EIF Sbjct: 136 YIGFDKDRLYITVYIDDEEAYDIWTNEIGVDPSHILK--TADNFWQIGE-GPCGPDTEIF 192 Query: 177 FDQGECI-PGGLPGS----SEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 +D+GE P GL E +RYIE+WN VF QF+ + +++ LP+ +IDTGM Sbjct: 193 YDRGEAYDPEGLGEKLFFEEMENDRYIEVWNNVFSQFDAKEGVARKDYKELPQKNIDTGM 252 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GNNIVNHRVIVDHLRSSSFLIA 287 GLER+ ++Q N+D DLF LI A EQ T M+YE N + RVI DH+R+ +F +A Sbjct: 253 GLERLTCLVQNGETNFDTDLFLPLIHACEQYTSMRYEDAENKMAFRVIADHIRTVTFALA 312 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG L ANEGRGYVLRR++RRA+ + R L M L+P + M YP + + I Sbjct: 313 DGALFANEGRGYVLRRVLRRAVRFGRKLKIEGAFMYKLVPVVYEIMKDFYPYIEEKIDYI 372 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 E+ +++E+ERF TL G LL V+ +++L+G AFKLYDT+G PL++ +I Sbjct: 373 EKLVKAEEERFHATLADGEKLLLDVMEKNKDNKLLDGVTAFKLYDTYGFPLELTCEIAEE 432 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 G +D+ F++ +++QR RAR + S +++ L ++FIGYD Sbjct: 433 SGYQ-VDVQGFDEEMKKQRERARNAREDVESMSSQSA--DLMAFTQDSKFIGYD------ 483 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 +R Q V A+ + G+ V +A+S + +++ + T FYAE+GGQ Sbjct: 484 ----ERTCDAQ-------------VIALFKDGKQV-DAISDEG-DIILNTTVFYAESGGQ 524 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GD+G +GD + +I + K +H ++E G L L L +D + R ++ NH Sbjct: 525 IGDSGSFMGDALG-RIVNTVKAPHKQHLHKVVIEEGCLHVGSKLQLAVDNKKRDIITSNH 583 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 S THLL AL ++G+H+ Q GS ++ + LRFD TH + ++ +LK IE VN I+++ Sbjct: 584 SCTHLLQSALKKVVGNHIQQAGSFVSDEYLRFDFTHFEKVSVQQLKEIEQLVNRFISEHH 643 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV M E+A SGA AL KY D VRVV++ G S CGG HV++T EI + Sbjct: 644 PVSKVEMPIEEAKQSGATALFDEKYGDVVRVVTM-----GDVSKEFCGGCHVNNTQEIGI 698 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEIWEE 766 I+SE SI +GIRRI A TG A +++ L+ +A LK+ S NV +VE++ E Sbjct: 699 CKIISEESIGSGIRRITAKTGYSAYEEFAAEEKTLRHIADDLKMKSIVNVDTKVEQVLHE 758 Query: 767 YRKLQLIHAKRK---LQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKI 820 +L+ A + L +L H++ + N +I +D + LK + ++ + Sbjct: 759 NAQLKKELAALQSEMFTLKANEL-IHEVKECNGRHVLIKRMDGADANALKDIASTIKAQK 817 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLL---DRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + I+ L + +K V+ V D L D DL + A +L G GGGR +AQ+ Sbjct: 818 EHVIVFLASVCNDK---VVFVAGADKLAVADGIKCGDLVK-EAAMLCDGKGGGRADLAQA 873 Query: 878 GGPNGNKADQAI 889 GG + K D+A+ Sbjct: 874 GGKDVTKVDEAV 885 >gi|168207852|ref|ZP_02633857.1| alanyl-tRNA synthetase [Clostridium perfringens E str. JGS1987] gi|170660832|gb|EDT13515.1| alanyl-tRNA synthetase [Clostridium perfringens E str. JGS1987] Length = 879 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 341/905 (37%), Positives = 520/905 (57%), Gaps = 64/905 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + +TT Sbjct: 7 NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + + + Sbjct: 67 QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181 Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + L S + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGRG Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ERF Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELKEKADYIKKIIKLEEERF 359 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D G+ +L +S + + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418 Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +FN+ ++EQR RAR + +G K+ S+ T+F GY L Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++S V + E E G++ ++ D+TPFYAE GGQ+GD Sbjct: 467 ----------------LNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDR 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +TD +K G FVH+ V G L+ + L++D R + NH+ATH Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M+ ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IV Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769 SES + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826 ++ K KL ED ++N + + +E VD L+ + D ++ K+ +GI++ Sbjct: 746 KEIAELKAKLVQGAEDDILKDKIEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884 L K +++ + T++ L N V ++ + GGGGGGRP MAQ+GG N Sbjct: 806 LAS-GNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862 Query: 885 ADQAI 889 +A+ Sbjct: 863 IAKAL 867 >gi|168214257|ref|ZP_02639882.1| alanyl-tRNA synthetase [Clostridium perfringens CPE str. F4969] gi|170714273|gb|EDT26455.1| alanyl-tRNA synthetase [Clostridium perfringens CPE str. F4969] Length = 879 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 341/905 (37%), Positives = 519/905 (57%), Gaps = 64/905 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + +TT Sbjct: 7 NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + + + Sbjct: 67 QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181 Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + L S + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGRG Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ERF Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEERF 359 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D G+ +L +S + + +++L+G AFKLYDT+G PL++ Q+IL +GL +DI Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKGLE-LDIE 418 Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +FN+ ++EQR RAR + +G K+ S+ T+F GY L Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 ++S V + E E G+ ++ D+TPFYAE GGQ+GD Sbjct: 467 ----------------LNSKVIVLGNNEEFKAELKEGEDGFLLTDKTPFYAEMGGQVGDR 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +TD +K G FVH+ V G L+ + L++D R + NH+ATH Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M+ ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IV Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769 SES + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826 ++ K KL ED ++N + + +E VD L+ + D ++ K+ +GI++ Sbjct: 746 KEIAELKAKLVQGAEDDILKDKVEINGVELVTAELKDVDGNSLRDLSDKVRNKLNNGIVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884 L K +++ + T++ L N V ++ + GGGGGGRP MAQ+GG N Sbjct: 806 LAS-DNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862 Query: 885 ADQAI 889 +A+ Sbjct: 863 IAKAL 867 >gi|322385851|ref|ZP_08059494.1| alanine--tRNA ligase [Streptococcus cristatus ATCC 51100] gi|321270136|gb|EFX53053.1| alanine--tRNA ligase [Streptococcus cristatus ATCC 51100] Length = 872 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 347/925 (37%), Positives = 505/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L K ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKKKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +TP Sbjct: 469 ----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++TDVQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDAAGNVVAKVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLAIDT 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILGSH +Q GS + LRFD TH + +T EL++IE Sbjct: 558 NRRLRVMKNHTATHLLHAALHNILGSHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LKV Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKVPQLKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+D+ +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDV----HAGNLVKELAPIV-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|257066429|ref|YP_003152685.1| alanyl-tRNA synthetase [Anaerococcus prevotii DSM 20548] gi|256798309|gb|ACV28964.1| alanyl-tRNA synthetase [Anaerococcus prevotii DSM 20548] Length = 870 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 321/908 (35%), Positives = 511/908 (56%), Gaps = 58/908 (6%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 ++ +R+ +L FF + GH LL S LIP +D +L+ N+GM P K FTG++K T Sbjct: 6 MNELRSKYLNFFGNEKGHTLLKSFPLIPIDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKCVR D++ VG+T RH TFFEMLGNFSFG YFK+ AI A++ LTKE ++ + Sbjct: 66 SSQKCVRTA----DIERVGKTERHGTFFEMLGNFSFGDYFKKEAITWAYEFLTKELEISK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +++TV+ EDEEA+ +W GL +++I+R DNFW + E GPCGPCSEIF D+G Sbjct: 122 DDIWVTVFKEDEEAYNIWHDEIGLDSERILREGKEDNFWEL-EVGPCGPCSEIFVDRGAG 180 Query: 183 IP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 PG +++ +R++E+WNLVF QF + ++ L +IDTGMGLER+A VLQ Sbjct: 181 RAIDENDNRPG-NDDSDRFMEVWNLVFTQFNKDSQGNYTPLAHPNIDTGMGLERIAMVLQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 +K N +++D+ +I E+++ KY+ + V+ RVI DH ++ +FL DG+LP+NE Sbjct: 240 DKDNIFEVDVMAAIISEIEKLSNKKYKESKKDDVSIRVIADHAKAMTFLTCDGVLPSNEK 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + +LLG + +++ + Y EL + I+ +R E+E Sbjct: 300 RGYVLRRLIRRAYRHGKLLGIEGEFLTNIVDKVIDTYKVEYDELDANREKIKSVIRDEEE 359 Query: 357 RFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF KT+D+GL L+ ++S + K+++L+G AFKLYDT+G PLD+ ++IL + L +D Sbjct: 360 RFQKTIDQGLERLESLISKMEKIKNKVLDGKEAFKLYDTYGFPLDLTKEILEEKNL-DVD 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +FN ++ Q+ AR + + I + T F+GYD L Sbjct: 419 EKTFNDEMQIQKQTAREARKKDAGWSLDNI---NTDGIAKTSFVGYDNL----------- 464 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + + + ++ V G V+ D+T FYAE GG++ DTG Sbjct: 465 ------------DIKARILNLFKENSEVSSLSEGDNGIVISDKTSFYAEGGGEVADTGLI 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + D + ++ DVQK+ + I+ H+ V G + +D R + NHSATHLL Sbjct: 513 LSDSFKARVIDVQKQKD-IYFHYIEVVEGAVFVGDDAQFKVDRNKRLAIQRNHSATHLLD 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG V Q GS + + LRFD +H++ +T E+ +E+ VN I + V I+ Sbjct: 572 QALRDVLGEDVKQAGSLVDENKLRFDFSHNRALTKEEIDKVEEIVNREIVKQELVTKEIV 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + +++ GA L KY D+VRVVS+ G +S LCGG HV++T +I++ I ES Sbjct: 632 DYKESQKMGAIGLFEDKYKDKVRVVSM-----GDYSIELCGGCHVNNTSDILMFKIKQES 686 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ AG+RRIEA+TG++A +L + KL +A L + N+ R++ + +E KL+ + Sbjct: 687 SVSAGVRRIEALTGKKAFEYLNDRANKLDQVAERLNTNTNNITNRIDSLEKEIEKLKSEN 746 Query: 775 AKRKLQLNVEDL------SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 ++ K N D+ +I +N + EL+ + ++ I + II+ Sbjct: 747 SRLK-STNSSDIVSELKEDVKEIKGINLLVKKFENASMDELRDYENRIKSSIDNLIIVFA 805 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 +S K + V + L D++NA + R A++ GG GGG+ + AQ+GG + +K +A Sbjct: 806 SVS--DKIVFTVSVDDKLTDKYNAGKIVRQIAQIT-GGNGGGKKNFAQAGGKDISKLKEA 862 Query: 889 IAGVASFL 896 + V+ + Sbjct: 863 LEKVSEII 870 >gi|326693841|ref|ZP_08230846.1| alanyl-tRNA synthetase [Leuconostoc argentinum KCTC 3773] Length = 893 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 352/940 (37%), Positives = 514/940 (54%), Gaps = 100/940 (10%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF GHE++PS +LIP +DPTL++ NSG+ K F G P +T Sbjct: 7 AEVRQMFLDFFASKGHEVVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEM+GNFS G YFKE I AW+LLT + LD+ Sbjct: 67 QKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEEVIPWAWELLTSPEWYGLDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY+TVY +D+EA K+W++ + L A I + DNFW + E GP GP SEIFFD+G Sbjct: 123 ERLYVTVYPKDQEAKKIWEEKTDLPAGHIYEV--EDNFWDIGE-GPSGPDSEIFFDRGPA 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTGMGLE 231 P PG E ERY+EIWN+VF QF + + LP +IDTGMGLE Sbjct: 180 FQDLPDDDPEMYPGG--ENERYLEIWNIVFSQFNHLPGMTDNSQYPELPHKNIDTGMGLE 237 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG----NNIVNHRVIVDHLRSSSFLI 286 R+ +V Q N+D DLF +IQA+E ++ KY+G ++ + +VI DH+R+ +F I Sbjct: 238 RVVSVFQNGRTNFDTDLFLPIIQATEALSPNFKYDGTKDSDSNTSFKVIADHIRAITFAI 297 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 +DG +P+NEGRGYV+RR++RRA+ + + LG + L+P + M S YPE+++ Sbjct: 298 SDGAMPSNEGRGYVIRRLLRRAVLHGQKLGIQGEFLTQLVPIVGEIMQSYYPEVLENAAR 357 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 I++T+ +E++RF TL GL LLD V++ GK +I D AFKL DT+G PL++ Q+ Sbjct: 358 IQKTVAAEEKRFNATLTGGLALLDDVIAAAKADGKTQISGAD-AFKLSDTYGFPLELTQE 416 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462 GL +D+ FN+AL+ QR+RARA S G + LK A++++G+ Sbjct: 417 QAAEAGLT-VDVDGFNEALQAQRARARAARSNDKSMGVQNAVLTDLKV---ASEYVGWS- 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE----IVEEAVSGQKVEVVFDQT 518 ++ + +V I Q + ++++AV+G++ ++VFD+T Sbjct: 472 --------------------EIAVDSAEVVAIIGQDADGIDALLDQAVAGEQRQLVFDKT 511 Query: 519 PFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 PFYAE GGQ+ D G + GD + ++ DVQK G VH V I E ++ L + Sbjct: 512 PFYAEMGGQVADFGTVLNKQGD-VVAEVIDVQKAPNGQHVHTVNVLADITLGE-NVDLRV 569 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D +S NH+ATH+L AL +LG V Q GS + PD LRFD T+ P+++A+L I Sbjct: 570 DMARHIAVSKNHTATHMLDQALRNVLGGDVHQAGSLVEPDYLRFDFTNEGPVSAADLDRI 629 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E VN IA+N P+ + E A GA A+ G KY D VRVVS+ G + G Sbjct: 630 EAMVNAEIAKNAPISWMETDIETAQQMGAVAVFGEKYGDVVRVVSI-----GDFNKEFDG 684 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-G 754 GTH ST E+ L IVSES I AG+RRIEA+TG A + ++ LK++A+ +K + Sbjct: 685 GTHAQSTAELGLFKIVSESGIGAGVRRIEAVTGLEALALYKAEENALKAVAAQVKAQKIT 744 Query: 755 NVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV 812 +V ++ E + Q L + KL D + + N ++I++++ S Sbjct: 745 EAPAKVADLQAELKATQRTLESVEAKLANAAADEVFNDVKTSNGHTYIVAQLPV----SG 800 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG--- 869 MD L++ + K S ++V+ D+ + N + A A G G Sbjct: 801 MDGLRQVADNW--------KATYPSEVLVLAADIDGKVNLIVAASPEANAAGIKAGDLIK 852 Query: 870 -----------GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GRP MAQ+GG N A A VA FL + Sbjct: 853 AITPRVGGGGGGRPDMAQAGGKNPAGIPDAFAAVADFLAQ 892 >gi|123965286|ref|YP_001010367.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515] gi|205830181|sp|A2BTZ9|SYA_PROM5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123199652|gb|ABM71260.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9515] Length = 886 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 330/908 (36%), Positives = 515/908 (56%), Gaps = 78/908 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+F++ H ++PSSSLIP +DPT+M T +GM+PFK +F G ++ QK Sbjct: 15 IRKAFLDFYESKSHLIIPSSSLIP-DDPTVMLTIAGMLPFKPVFLGLRNRPSPRASSSQK 73 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVG T RHHTFFEMLGNFSFG YFK+ AIQ AW+L+T + L + Sbjct: 74 CLRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIQWAWELITDIYHLKPENII 129 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 I+V+ ED E+ K+W+ G+ ++IIR+ DNFWS TGPCGPCSE+++D G Sbjct: 130 ISVFHEDHESEKIWRDNIGIIPERIIRLDEKDNFWSSGATGPCGPCSELYYDFNP--EKG 187 Query: 187 LPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 L E+G+R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+KTNNY+ Sbjct: 188 LKNIDLEDGDRFIEFYNLVFMQYNRDSNGMLSDLKFKNIDTGMGLERMAQILQKKTNNYE 247 Query: 246 IDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DL +++ + + + Y + ++ +++ DH R+ LI+DG++ +N GRGY+LR Sbjct: 248 TDLILPIVKEAALIANIDYFSSDDRTKISLKILGDHTRAIIHLISDGVVASNLGRGYILR 307 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RR + + RLL + + L + M + YP+L K I + E++RF +TL Sbjct: 308 RLLRRMIRHGRLLAIKDDFLSRLASIGISLMQNTYPDLKNNKERILREINIEEKRFLETL 367 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 DRG LL+ ++ +++++G AF+LYDT+G PL++ ++IL + + +D+ F + + Sbjct: 368 DRGEKLLNDLIR--SGEKLISGTKAFELYDTYGFPLELTKEILEEKNI-NVDLEGFTREM 424 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLK-------EKYGATQFIGYDLLRGSKFMKEDRKV 475 E Q+ RA+A S +KI +LK + + T F GYD L Sbjct: 425 EAQKERAKAAS--------QKIDLTLKGSIEREIDLFDQTIFEGYDSLNS---------- 466 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 IVK I + VE+A+ GQ V+++ DQT FY E+GGQ+GDTG Sbjct: 467 -------------QGIVKGIFFESNSVEKAIQGQTVQIILDQTSFYGESGGQVGDTGTIS 513 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + I V +K + IF+H V +G + + +D NR + NH+ATHLL Sbjct: 514 RNDAEIDIDKVIRK-KNIFLHCGTVRKGEICRNQLVETRVDKFNRAKAESNHTATHLLQS 572 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL I+ VSQ GS + + LRFD +P++ ++ +E VN I++N P+ + M+ Sbjct: 573 ALKLIIDKSVSQRGSLVGFNKLRFDFNSPQPLSKEQISQVESLVNSWISENHPIEVKNMD 632 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++DA+ +GA A+ G KY D VRVV V GV S LCGGTHV +T E+ I+SE Sbjct: 633 KDDALKAGALAMFGEKYGDIVRVVDVP----GV-SMELCGGTHVQTTSEVGSFKIISEIG 687 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHA 775 I +GIRRIEA++GQ + +DE + L+ LK + R++ + E L++ Sbjct: 688 ISSGIRRIEALSGQLVLDYFKERDETVNKLSDLLKARPSQLFERIDSLQTE-----LVNK 742 Query: 776 KRKLQLNVEDL----------SCHKIADVNFMSHIISEVDSKELKS-VMDALQKKIQSGI 824 +++Q +++ S KI + + + I +D L+S +D K + Sbjct: 743 NKEIQRMKDEIAYFKYSSLSSSAKKIGSFSLIINQIDGLDGSSLQSAALDLTSKLGDKSV 802 Query: 825 IMLVGISKEKKASVLIVVT--EDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ++L GI +K +L VV+ +DL+ R +A L +++ GGGGG+P+ AQ+G + Sbjct: 803 VILGGIPDTEKKKLLFVVSFGDDLVRRGMHAGKLINEISRIC-SGGGGGKPNFAQAGAKD 861 Query: 882 GNKADQAI 889 +K + A+ Sbjct: 862 IDKLNDAL 869 >gi|329919606|ref|ZP_08276595.1| alanine--tRNA ligase [Lactobacillus iners SPIN 1401G] gi|328937411|gb|EGG33833.1| alanine--tRNA ligase [Lactobacillus iners SPIN 1401G] Length = 877 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 343/903 (37%), Positives = 516/903 (57%), Gaps = 73/903 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF+++GH +L S+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SQVRQMFLDFFKEHGHMVLKSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YFKE I AW+ LT K LD Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFKEEVIPWAWEFLTSDKWLGLDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+TVY +D +A++LW ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 123 DKLYVTVYPKDTDAYRLWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQE 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 180 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLANGKYVDQPHKNIDTGMGLERVVS 237 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q+ N++ DLF +I+ +E+++ G +Y + V ++I DH+R+ SF IADG LP Sbjct: 238 VIQDAPTNFETDLFMPIIKQTEKLSDGKQYNKVAEDDVAFKIIADHVRAVSFAIADGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+ + M S YPE++ + +E+ ++ Sbjct: 298 SNSGRGYVLRRLIRRADLNGKRLGIKGAFLYKLVGVVGEIMKSHYPEVVDQQAFVEKVIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RF +TL GL LLD ++S K L+G AFKL+DT+G P ++ + GL Sbjct: 358 NEEDRFQETLSSGLNLLDSLISDAKSAKATKLSGKDAFKLFDTYGFPYELTFEAAQDAGL 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F+ ++ Q+ RAR L S G+ + ++K++ + F + L Sbjct: 418 V-VDKEEFDAEMKAQKERARKARGNLQSMGSQDITLMNIKDE---SVFEYHQL------- 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +ED L IV ++V++ V+G++ ++FD+TPFYAE GGQ+ Sbjct: 467 QEDHARLLD----------------IVVDDKLVDQ-VNGEQATLIFDKTPFYAERGGQVA 509 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G L + DVQ +H + + + E VL +D Q RR L NH Sbjct: 510 DHGEIFNQAGELVAHVIDVQHAPNDQNLHFVELVLPMQKGE-EYVLKVDEQRRRGLKHNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LG+H Q GS + PD LRFD T +P+T E+ ++E VN+ I + Sbjct: 569 TATHLLHAALRQVLGTHTHQAGSLVEPDYLRFDFTSLEPMTKREIATVERLVNEKIWAEI 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T I ++E + GA AL G KY+++VRVV + S CGGTH +T +I + Sbjct: 629 PVKTTITDQETGLKMGALALFGEKYHEKVRVVQI-----NDFSIEFCGGTHCENTDQIGM 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEE 762 L IVSES+I AG+RRI A+TGQ+A + + DE LK + +K + Q VV + Sbjct: 684 LKIVSESAIGAGMRRIVAVTGQQAYEYAVKHDEILKEIQDEVKATKVDDIQNKVVALEDA 743 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 + EE + ++ + ++ Q DL+ I D+N + I VD +L+ + D + + Sbjct: 744 LREEQKTVEQLKSQIN-QAKASDLT-DDIKDINGLKVIAKIVDVDGMNDLRELSDNWKTQ 801 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 S +++L G + KA++LI + + + A DL +++A + GGGGGGRP+MAQ+G Sbjct: 802 NLSDVLIL-GTTVAGKANMLISLNDKAIKAGHKAGDLIKIAAPIF-GGGGGGRPNMAQAG 859 Query: 879 GPN 881 G N Sbjct: 860 GKN 862 >gi|205830259|sp|A2CDK7|SYA_PROM3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 892 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 340/924 (36%), Positives = 519/924 (56%), Gaps = 82/924 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63 S IRT FL FF + H+++PS+SL+P DPT++ T +GM+PFK +F GQ E+P +A T+ Sbjct: 18 SEIRTAFLTFFAERAHQVIPSASLVP-EDPTVLLTIAGMLPFKPVFMGQAERPAPRA-TS 75 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F L+ + Sbjct: 76 SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLNPK 131 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + Sbjct: 132 NLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPDL 191 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G E+ R++E +NLVFMQ+ + + L +IDTGMGLERMA +LQ NN Sbjct: 192 -GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPNN 250 Query: 244 YDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ D+ LI+ + + G+ Y+ + +VI DH R+ + LI DG+ +N GRGY+ Sbjct: 251 YETDIIYPLIETAAGLAGLDYQKLDDKGKTSFKVIGDHCRAITHLICDGVTASNLGRGYI 310 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RR++RR + + RL+G +P + + A M AYP+L + + LI L E+ RF + Sbjct: 311 MRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFLE 370 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG +L VL + ++++G AF+LYDT+G PL++ Q+I GL +D+ F Q Sbjct: 371 TLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFEQ 427 Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 A+++QR RA+A ++ + G E++ L+ AT+F GY +L Sbjct: 428 AMDQQRQRAKAAAVSIDLTLQGAIEQMAAELE----ATRFKGYQVL-------------- 469 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---- 533 ++P V A+V GE E A +G V++V D TPFY E+GGQ+GD G Sbjct: 470 EQP---------CCVLALVVNGESAERASAGDNVQIVLDTTPFYGESGGQVGDHGVLSGE 520 Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + G+G+ + + DV + +FVH +ERG L + +D RR+ NH+ATHL Sbjct: 521 GSGGNGVIVAVDDVSRH-RNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHL 579 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++ S + Q GS + D LRFD S+ +T+ EL+ IE +N I ++ ++ Sbjct: 580 LQAALKQVVDSGIGQAGSLVDFDRLRFDFHCSRAVTAKELEQIEALINGWIMESHDLIVE 639 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ ++A A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IV+ Sbjct: 640 EMSIQEAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVA 694 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 ESS+ AGIRRIEA+ G ++L +D +K L K ++ RV + EE + Q Sbjct: 695 ESSVAAGIRRIEAVAGPAVLAYLNERDVVVKELGDRFKAQPSEIIERVISLQEELKSSQK 754 Query: 772 -LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 L A+ +L + + V +++ +D E + +A Q G++ +G Sbjct: 755 ALTAARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQ-----GLLDQLG- 808 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHM 874 +V++ D D + +A +V+ G G RP++ Sbjct: 809 ---DATAVVLGGLPDPSDEGKVILVAAFGKQVIAQGQQAGKFIGSIAKRCGGGGGGRPNL 865 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ+GG +G D A+ LK+ Sbjct: 866 AQAGGRDGAALDGALEAAKVELKQ 889 >gi|315037651|ref|YP_004031219.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112] gi|312275784|gb|ADQ58424.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1112] Length = 879 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 351/933 (37%), Positives = 528/933 (56%), Gaps = 96/933 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P + +T Sbjct: 5 NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K L Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY +DE++FK+W K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 121 PKDKLYCTVYPKDEDSFKVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I A+E++T G KY N + ++I DH+R+ SF IADG Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIRGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF TLD GL LLD ++ KD+ ++G AFK++DT+G P ++ + Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ +E Q+ RAR L S G + ++K+K S Sbjct: 415 GLK-VDKKGFDAEMEAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F ++ ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ Sbjct: 460 FERD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581 + D G DG + ++ DVQ +H VE+G +L +D + R Sbjct: 507 VADHGNIYSQDGELVAKVIDVQHAPNDQNLHFVDLILPVEKG-----KEYILKLDKERRE 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+K++E+ VN Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTALEPMTPREIKTVEELVNQ 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + V T I E+ GA AL KY D+VRVV + G SS CGGTHV + Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFNGKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T +I + I SES++ AG+RRIEA+T ++A +L + L ++ +K ++ N++ ++ Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLAERSSLLDNIQEDVKATKPDNIIDKI 736 Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL--NVE---DLSC-HKIADVNFMSHIISEVDS 806 + + + Q I+ + Q+ NV+ DL+ IADVN M+ Sbjct: 737 DSLESDLHDSQKQVEALTKKINQAKAGQIFDNVKQAGDLTVISAIADVNNMN-------- 788 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 +L+ + D + +S +++L + + KA+++I + + LD+ A DL +++A + G Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-NNDGKANMIISLDQKALDKGLKAGDLIKIAAPIF-G 845 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGGGRP+MAQ+GG + AI V + K Sbjct: 846 GGGGGRPNMAQAGGKKPEGLNDAIKAVIDEISK 878 >gi|227484973|ref|ZP_03915289.1| alanine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172] gi|227237128|gb|EEI87143.1| alanine--tRNA ligase [Anaerococcus lactolyticus ATCC 51172] Length = 872 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 327/909 (35%), Positives = 516/909 (56%), Gaps = 56/909 (6%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 ++ +R ++LEFF + H LL S L P +D TL+ N+GM P K FTG+ K T Sbjct: 6 MNELRKSYLEFFGNEKNHTLLKSFPLTPIDDDTLLLINAGMAPLKKYFTGELKMKNNRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+CVR G D++ VG+T RH TFFEMLGNFSFG YFK AI A++ LTK+ ++++ Sbjct: 66 SSQRCVRTG----DIERVGKTERHGTFFEMLGNFSFGDYFKREAINWAFEFLTKKLEINK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L++TVY +D+EA+ +W G+ A++I+R DNFW + E GPCGPCSEI+ D+G Sbjct: 122 DDLWVTVYYDDDEAYNIWHDEIGMPAERILRQGKEDNFWEL-EVGPCGPCSEIYVDRGPE 180 Query: 183 IP----GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 PG ++ +R++E+WNLVF QF + N+ L +IDTGMGLER+A +LQ Sbjct: 181 RAVDENDNQPG-NDNSDRFMEVWNLVFTQFNKDNQGNYTNLSHPNIDTGMGLERIAMILQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEG 296 K N ++ID+ K +I E+++G Y+ N + V+ RVI DH ++ +FL++DG++P+NE Sbjct: 240 GKDNIFEIDVMKEIISEIEKLSGKTYKANKVDDVSIRVIADHAKAMTFLVSDGVIPSNEK 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + +LLG P + ++ + Y EL+ I + + E++ Sbjct: 300 RGYVLRRLIRRAYRHGKLLGIEGPFLNKIVDKVIETYKVEYDELVDNMDNIHKVISDEED 359 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF KT+++GL LD +++ + K+ +IL+G AFKLYDT+G PLD+ ++IL + L +D Sbjct: 360 RFQKTINQGLEKLDSLIADMEKNNIKILDGSEAFKLYDTYGFPLDLTKEILEEKNL-DVD 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + +E QR+ AR + + EK T F GY+ Sbjct: 419 DEKFEEEMENQRNLARNARKTDNKHKHDNLLADHLEK---TDFQGYE------------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 DL + AI GE + K +V D+T FY E GG++ DTG Sbjct: 463 ------NFDLEGKLL----AIFVDGEENSSIKAPNKGIIVSDKTSFYPEGGGEVADTGFI 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 ++ DVQKK + IF + + E +R ++ ID + R + NHSATHLL Sbjct: 513 KTSNACAKVVDVQKKNDIIFHYVEVTEGEFVRGSVAR-FVIDLERRLDIQRNHSATHLLD 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG +++Q GS + D LRFD T++K +++ EL+ IE+ +N I + LPV M Sbjct: 572 KALKNVLGQNINQAGSLVDEDKLRFDFTYNKALSNEELRKIEEEINAKIREQLPVKKEYM 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + + + GA AL KY D VRVVS+ G +S LCGG HV++T E+++ I SES Sbjct: 632 DYKKSEELGAVALFEDKYKDIVRVVSM-----GDYSIELCGGCHVNNTAEVLMFKIKSES 686 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQL 772 S AG+RRIEAITG+ L+ ++ +K +A+ L + N+ ++ + E + ++ Sbjct: 687 SAAAGVRRIEAITGKAVFEELISKENTIKEIANDLDANINNIKSKINSLKSEIASKDSEI 746 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS---KELKSVMDALQKKIQSGIIMLVG 829 K + +V KI VN ++ +I++ D+ EL+ + + + + + +I+ Sbjct: 747 KRLKSQSNKDVYSELKSKIEKVNGVNLLIAKFDNASVDELRELENKFKNEYDNLVIIFAT 806 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +S K + V ++L D++NA + R A++ GG GGG+ + AQ+GG + + D+A+ Sbjct: 807 VS--DKIIFTVSVDDNLTDKYNAGKIVREIAQIT-GGNGGGKKNFAQAGGSDISALDKAL 863 Query: 890 AGVASFLKK 898 +K+ Sbjct: 864 KRAYEIIKE 872 >gi|307701921|ref|ZP_07638930.1| alanyl-tRNA synthetase [Streptococcus mitis NCTC 12261] gi|307616736|gb|EFN95924.1| alanyl-tRNA synthetase [Streptococcus mitis NCTC 12261] Length = 872 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 349/926 (37%), Positives = 507/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 498 PFYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVDV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILGSH +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGSHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K + +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|325956136|ref|YP_004286746.1| alanyl-tRNA synthetase [Lactobacillus acidophilus 30SC] gi|325332701|gb|ADZ06609.1| alanyl-tRNA synthetase [Lactobacillus acidophilus 30SC] gi|327182944|gb|AEA31391.1| alanyl-tRNA synthetase [Lactobacillus amylovorus GRL 1118] Length = 879 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 351/933 (37%), Positives = 527/933 (56%), Gaps = 96/933 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P + +T Sbjct: 5 NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K L Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY +DE++FK+W K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 121 PKDKLYCTVYPKDEDSFKVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I A+E++T G KY N + ++I DH+R+ SF IADG Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIRGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF TLD GL LLD ++ KD+ ++G AFK++DT+G P ++ + Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ +E Q+ RAR L S G + ++K+K S Sbjct: 415 GLK-VDKKGFDAEMEAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F ++ ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ Sbjct: 460 FERD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581 + D G DG + ++ DVQ +H VE+G +L +D + R Sbjct: 507 VADHGNIYSQDGELVAKVIDVQHAPNDQNLHFVDLILPVEKG-----KEYILKLDKERRE 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+K++E+ VN Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTALEPMTPREIKTVEELVNQ 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + V T I E+ GA AL KY D+VRVV + G SS CGGTHV + Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFNGKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T +I + I SES++ AG+RRIEA+T ++A +L + L + +K ++ N++ ++ Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLAERSSLLDDIQEDVKATKPDNIIDKI 736 Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL--NVE---DLSC-HKIADVNFMSHIISEVDS 806 + + + Q I+ + Q+ NV+ DL+ IADVN M+ Sbjct: 737 DSLESDLHDSQKQVEALTKKINQAKAGQIFDNVKQAGDLTVISAIADVNNMN-------- 788 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 +L+ + D + +S +++L + + KA+++I + + LD+ A DL +++A + G Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-NNDGKANMIISLDQKALDKGLKAGDLIKIAAPIF-G 845 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGGGRP+MAQ+GG + AI V + K Sbjct: 846 GGGGGRPNMAQAGGKKPEGLNDAIKAVIDEISK 878 >gi|298735738|ref|YP_003728263.1| alanyl-tRNA synthetase [Helicobacter pylori B8] gi|298354927|emb|CBI65799.1| alanyl-tRNA synthetase [Helicobacter pylori B8] Length = 847 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 336/888 (37%), Positives = 494/888 (55%), Gaps = 61/888 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG +P + Q Sbjct: 3 IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRAASSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEIVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLMHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ARVDMQGFENC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++EQ R++A G + + ++ Y F+GY+ C P Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTE------------C---P 457 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + S K I EA Q+V V+ ++TPFYAE GG +GD G D Sbjct: 458 AKVLGFFDSDFKEIT-------EANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKDNEEA 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + K G+ +++ + + + + D R +++ +HSATHLL AL +L Sbjct: 511 ALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M A Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKD 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+R Sbjct: 629 KGALALFSEKYAENVRVVSFKEV-----SIELCGGIHVENTGLIGGFRIVKESGVSSGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ G+ ++++LK+ + LK +V+ + ++ E + Q K + + Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KAPVSM 737 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 DL KI V+ + ++ + D KE+ +D L+ K + + M+ KE + L Sbjct: 738 ---DLPIEKIHGVSLVVGVVEQGDIKEM---IDRLKSKHERLLAMV--FKKENERITLAC 789 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + NA A A++L GG GGGR A +GG + K A+ Sbjct: 790 GVKNAPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAAL 834 >gi|312977883|ref|ZP_07789629.1| alanine--tRNA ligase [Lactobacillus crispatus CTV-05] gi|310895190|gb|EFQ44258.1| alanine--tRNA ligase [Lactobacillus crispatus CTV-05] Length = 879 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 349/933 (37%), Positives = 519/933 (55%), Gaps = 96/933 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P +T Sbjct: 5 NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT L Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I A+E++T K G N ++I DH+R+ SF IADG Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDDKKYGVNKEDTTAFKIIADHVRAVSFAIADGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF TLD GL LLD ++ KD+ ++G AFK++DT+G P ++ + Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ + Q+ RAR L S G + ++K+K S Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F ++ ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ Sbjct: 460 FERD----TYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581 + D G DG + ++TDVQ +H VE+G VL +D + R Sbjct: 507 VADHGDIYNQDGELVAKVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKLDKERRE 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELK++E+ VN Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQ 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + V T I E+ GA AL +KY D+VRVV + G SS CGGTHV + Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T +I + I SES++ AG+RRIEA+T ++A +L + + L + +K ++ N+V ++ Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKI 736 Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806 + + + Q I+A + Q+ DL+ ADVN M+ Sbjct: 737 DSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMN-------- 788 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 +L+ + D + +S +++L KA+++I + + LD+ A +L +++A + G Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-ENAGKANMIIALDQKALDKGLKAGNLIKIAAPIF-G 845 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGGGRP+MAQ+GG N + AI V + K Sbjct: 846 GGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISK 878 >gi|66819737|ref|XP_643527.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4] gi|74860734|sp|Q86H43|SYAM_DICDI RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|60471622|gb|EAL69578.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4] Length = 932 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 345/935 (36%), Positives = 498/935 (53%), Gaps = 117/935 (12%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++ +R TFL +F+KNGH+ LPS SL+P ND +L+FTN+GMV FKN FTG E+ Y+ V Sbjct: 28 TSTKEVRETFLNYFEKNGHKRLPSGSLLPYNDNSLLFTNAGMVQFKNQFTGNEESKYKKV 87 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFD 119 TT QKCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFGGY FK +IQ AWDLLTKE+ Sbjct: 88 TTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGGYNHFKRDSIQHAWDLLTKEYG 147 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFD 178 L + RL I+V + DEE+ ++W+ GL DKI+ DNFWSM + GPCGPCSEIF+D Sbjct: 148 LPKERLAISVLEGDEESAEIWRNQIGLPNDKIMYKGREDNFWSMGDGPGPCGPCSEIFWD 207 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI----LPKMSIDTGMGLERMA 234 G+ + +GERY+EIWNLVFMQ+ + K+ + LP +DTGMGLERMA Sbjct: 208 HGKEV---------DGERYLEIWNLVFMQYNKSGKEGDEMPVDKLPIPCVDTGMGLERMA 258 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----------VNHRVIVDHLRSSSF 284 +VLQ K NYDIDLF++LI + +++ M +RVI DHLRS SF Sbjct: 259 SVLQGKFTNYDIDLFQNLINSFKEIVTMDVGRAQFQLQQDPQRVETAYRVIADHLRSISF 318 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI+DG++P N GRGYVLR+I+RRA+ Y ++LG+ P + L P L EMG YP+LI+ Sbjct: 319 LISDGVIPFNIGRGYVLRKIIRRALSYGKILGFNGPFLSTLFPLLEREMGDIYPQLIERS 378 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I + +E+ F + RG+ L+ + + LN + F LY+T+GLPL++ Q + Sbjct: 379 NEIRNVILNEEGTFYNAIQRGIPYLEEFV----QQNKLNEESLFLLYNTYGLPLEMSQ-V 433 Query: 405 LCARGLAGIDIISFNQALEEQRSRAR----------AHSLGLGSGTTEKIWFSLKEKYGA 454 + ID+ N+ ++E R ++R + + EK + S K Sbjct: 434 KAKQNNIEIDMDKVNKLIDETREQSRLTWNTSSSSSDQTTQQTTQLPEKTFLSWKSDNIK 493 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 +FIGY+ C + N S ++++ V + Sbjct: 494 PKFIGYN--------------GC------VENDNSKVLRSHFDN--------DSHLVYLS 525 Query: 515 FDQTPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGI------ 564 D+TPFY +GGQ+GD G I G + I ++ G+ + +VE Sbjct: 526 LDETPFYGTSGGQVGDVGELINVSSGKNVYRVINTIKPYEGGLVL---VVEWDPSQQLAS 582 Query: 565 -----LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 L+ + L +D R Q++++HSATHLLH AL ++G V Q GS + + LRF Sbjct: 583 QVYQDLKQDSLLNCRVDRSIRNQVAVHHSATHLLHAALRNVIGKSVVQAGSLVGSESLRF 642 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRV 678 D TH + +T +++ IE VND IA+++ + T + E A S L KY++ VRV Sbjct: 643 DFTHGQKLTPNQIEQIEQWVNDAIAKDIALNTDEIPYEQASKNSDTLQLFSEKYSELVRV 702 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 VS+ S LCGGTHV + I I+SESS+ AG RRIEA+ G A + Sbjct: 703 VSIP-----GFSKELCGGTHVERSSSIHQFKIISESSVAAGTRRIEAVAGLAATNFFKNH 757 Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798 + + L++ ++ + + + +L ++K++ ++ L +++ VN+ Sbjct: 758 YQLVHQLSN-------SINSPIVNFQQSFERLVNTNSKQEKEIFDLKLKIAQLSSVNYNG 810 Query: 799 ---------------HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 HII D K V + K+ S I L ISK K ++ + Sbjct: 811 QYKSDNGGEMIPLSLHIIDCEDKKAFTKVTENFAKEFSSSPIQLT-ISKGGKVLCQLLSS 869 Query: 844 EDLLDRFNAVD-LARLSAKVLGGGGGGGRPHMAQS 877 + D + + K +G G GGG MA + Sbjct: 870 SSSSSSSLSADTVLKQLFKSIGMGKGGGNKLMANA 904 >gi|260881197|ref|ZP_05403859.2| alanine--tRNA ligase [Mitsuokella multacida DSM 20544] gi|260849786|gb|EEX69793.1| alanine--tRNA ligase [Mitsuokella multacida DSM 20544] Length = 871 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 343/910 (37%), Positives = 524/910 (57%), Gaps = 63/910 (6%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L+FF +K GH LPS SLIP +DPTL+ +GM P K FTG+ KP VTT Sbjct: 4 NELREAYLQFFSEKKGHLRLPSFSLIPQDDPTLLLIGAGMAPLKPFFTGKMKPPRTRVTT 63 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVR G D++NVGRT RH TFFEMLGNFSFG YFK AI AW+ LT+ +L + Sbjct: 64 SQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKGEAIPWAWEFLTEVIELPKD 119 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TVY +D EA ++WK G D I+++ DNFW + GPCGP SEI+ D GE Sbjct: 120 KLWVTVYPDDTEAIEIWKSQPGFPQDHIVKM--EDNFWEIG-PGPCGPDSEIYIDLGEER 176 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + + +RY+EIWNLVF Q+++Q L +IDTG GLER+A+V+Q K Sbjct: 177 GCGSPTCAVGCDCDRYLEIWNLVFTQYDRQEDGSYKNLAHKNIDTGCGLERLASVVQNKK 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N++ DL +I+ + +V G++Y + ++ +VI DH RS + +I DGILP+NEGRGY Sbjct: 237 TNFETDLLYPIIEYAAKVAGVEYGKDEKTDISLKVIADHARSMAVMIMDGILPSNEGRGY 296 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCT--EMGSAYPELIQAKLLIEETLRSEDER 357 VLRRI+RRA+ + R+LG + + A+ S + ELI I++ + E++R Sbjct: 297 VLRRILRRAIRHGRMLGIKGKFLEGAVDAVVEIYRDASDFGELIAKHDYIKKVISIEEDR 356 Query: 358 FGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F TL++G+ LLD + L GKDE L G+V F+LYDT G P ++ ++IL GL +D Sbjct: 357 FAATLNQGMELLDAEIKSLKADGKDE-LPGEVGFRLYDTFGFPWELTEEILHENGL-DLD 414 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F++A++EQR RAR+ + ++ G D+ + +K D + Sbjct: 415 KEGFDKAMDEQRERARSAR-------------AENQRVAVPDLSGIDVSK----LKVDPE 457 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 K V AI + G++V+E G++ ++ D+TPFYAE GGQ+GD G Sbjct: 458 AKEAK------------VVAIWKDGKLVDEITDGEEAGIILDKTPFYAEGGGQVGDEGLL 505 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +G+ R++ T+ +K +G H + VE G L+ ++ + +D + + + NH+ATHLL Sbjct: 506 LGEFGRIKATNAKKLPDGTVYHVSYVEEGQLKVGETVKIEVDQEKKLASARNHTATHLLQ 565 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G V+Q GS +TPD LRFD T+ +P+T+ +L +E VN +I + V M Sbjct: 566 AALKKVVGDQVNQAGSSVTPDRLRFDFTNFEPVTAQQLADVEALVNKVILKGQDVEISHM 625 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + ++A +GA AL KY D VRVV V S LC G+HV + G+I + IV E+ Sbjct: 626 SLDEAKKAGAMALFSEKYGDVVRVVRVPG-----FSMELCAGSHVKNVGQIGMFKIVGET 680 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KL 770 I +G+RRIEAITG+ A + + L+ A+ LK ++ +V VE++ E + KL Sbjct: 681 GIASGVRRIEAITGKAALDYANEKLATLQKAAALLKANEDDVPAAVEKLQAEGKEMAGKL 740 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIML 827 + A ++ + + + L + D+N +S I + + + L+ V D K+ SG+++L Sbjct: 741 AEVAAMQE-KADAQQL-IAGVKDINGVSVITGKANVENMDSLRDVADLTLDKLGSGVVVL 798 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G + + K ++++ ++D + R A + GGGGGGRP MAQ+GG Q Sbjct: 799 -GCANDGKVNLVVKASKDAVKRGIHAGKIIKEAAAVVGGGGGGRPDMAQAGGKKAEALPQ 857 Query: 888 AIAGVASFLK 897 A A+ ++ Sbjct: 858 AFEKAAAVIE 867 >gi|124024525|ref|YP_001018832.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9303] gi|123964811|gb|ABM79567.1| Alanyl-tRNA synthetase:DHHA1 domain [Prochlorococcus marinus str. MIT 9303] Length = 930 Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust. Identities = 340/924 (36%), Positives = 519/924 (56%), Gaps = 82/924 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63 S IRT FL FF + H+++PS+SL+P DPT++ T +GM+PFK +F GQ E+P +A T+ Sbjct: 56 SEIRTAFLTFFAERAHQVIPSASLVP-EDPTVLLTIAGMLPFKPVFMGQAERPAPRA-TS 113 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F L+ + Sbjct: 114 SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLNPK 169 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + Sbjct: 170 NLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPDL 229 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G E+ R++E +NLVFMQ+ + + L +IDTGMGLERMA +LQ NN Sbjct: 230 -GNDDIDLEDDGRFVEFYNLVFMQYNRDGEGNLTPLANRNIDTGMGLERMAQILQGVPNN 288 Query: 244 YDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ D+ LI+ + + G+ Y+ + +VI DH R+ + LI DG+ +N GRGY+ Sbjct: 289 YETDIIYPLIETAAGLAGLDYQKLDDKGKTSFKVIGDHCRAITHLICDGVTASNLGRGYI 348 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RR++RR + + RL+G +P + + A M AYP+L + + LI L E+ RF + Sbjct: 349 MRRLLRRVVRHGRLVGIEKPFLQAMGEAAIALMVEAYPQLEERRKLILAELNREEARFLE 408 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG +L VL + ++++G AF+LYDT+G PL++ Q+I GL +D+ F Q Sbjct: 409 TLERGEKVLADVL--VANPQMISGGQAFELYDTYGFPLELTQEIAEEHGLT-VDLQGFEQ 465 Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 A+++QR RA+A ++ + G E++ L+ AT+F GY +L Sbjct: 466 AMDQQRQRAKAAAVSIDLTLQGAIEQMAAELE----ATRFKGYQVL-------------- 507 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---- 533 ++P V A+V GE E A +G V++V D TPFY E+GGQ+GD G Sbjct: 508 EQP---------CCVLALVVNGESAERASAGDNVQIVLDTTPFYGESGGQVGDHGVLSGE 558 Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + G+G+ + + DV + +FVH +ERG L + +D RR+ NH+ATHL Sbjct: 559 GSGGNGVIVAVDDVSRH-RNVFVHFGRIERGTLALGDLVNAQVDRACRRRAQANHTATHL 617 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++ S + Q GS + D LRFD S+ +T+ EL+ IE +N I ++ ++ Sbjct: 618 LQAALKQVVDSGIGQAGSLVDFDRLRFDFHCSRAVTAKELEQIEALINGWIMESHDLIVE 677 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M+ ++A A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IV+ Sbjct: 678 EMSIQEAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVA 732 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 ESS+ AGIRRIEA+ G ++L +D +K L K ++ RV + EE + Q Sbjct: 733 ESSVAAGIRRIEAVAGPAVLAYLNERDVVVKELGDRFKAQPSEIIERVISLQEELKSSQK 792 Query: 772 -LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 L A+ +L + + V +++ +D E + +A Q G++ +G Sbjct: 793 ALTAARAELAVAKSAALATQAVAVGEYQLLVARLDGVEGAGLQNAAQ-----GLLDQLG- 846 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHM 874 +V++ D D + +A +V+ G G RP++ Sbjct: 847 ---DATAVVLGGLPDPSDEGKVILVAAFGKQVIAQGQQAGKFIGSIAKRCGGGGGGRPNL 903 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ+GG +G D A+ LK+ Sbjct: 904 AQAGGRDGAALDGALEAAKVELKQ 927 >gi|256844557|ref|ZP_05550043.1| alanyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN] gi|256613635|gb|EEU18838.1| alanyl-tRNA synthetase [Lactobacillus crispatus 125-2-CHN] Length = 879 Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust. Identities = 348/933 (37%), Positives = 519/933 (55%), Gaps = 96/933 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P +T Sbjct: 5 NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT L Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I +E++T G KY N + ++I DH+R+ SF IADG Sbjct: 235 LSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAVSFAIADGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF TLD GL LLD ++ + KD+ ++G AFK++DT+G P ++ + Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ + Q+ RAR L S G + ++K+K S Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F ++ ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ Sbjct: 460 FERD----TYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581 + D G L ++TDVQ +H VE+G VL +D + R Sbjct: 507 VADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKLDKERRE 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELK++E+ VN Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQ 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + V T I E+ GA AL +KY D+VRVV + G SS CGGTHV + Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T +I + I SES++ AG+RRIEA+T ++A +L + + L + +K ++ N+V ++ Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKI 736 Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806 + + + Q I+A + Q+ DL+ ADVN M+ Sbjct: 737 DSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMN-------- 788 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 +L+ + D + +S +++L KA+++I + + LD+ A +L +++A + G Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-ENAGKANMIIALGQKALDKALKAGNLIKIAAPIF-G 845 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGGGRP+MAQ+GG N + AI V + K Sbjct: 846 GGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISK 878 >gi|295692276|ref|YP_003600886.1| alanyl-tRNA synthetase [Lactobacillus crispatus ST1] gi|295030382|emb|CBL49861.1| Alanyl-tRNA synthetase [Lactobacillus crispatus ST1] Length = 879 Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust. Identities = 348/933 (37%), Positives = 517/933 (55%), Gaps = 96/933 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P +T Sbjct: 5 NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT L Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I A+E++T K G N ++I DH+R+ SF IADG Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDDKKYGVNKEDTTAFKIIADHVRAVSFAIADGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF TLD GL LLD ++ KD+ ++G AFK++DT+G P ++ + Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKNSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ + Q+ RAR L S G + ++K+K S Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F ++ ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ Sbjct: 460 FERD----TYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581 + D G L ++TDVQ +H VE+G VL +D + R Sbjct: 507 VADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKLDKERRE 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELK++E+ VN Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQ 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + V T I E+ GA AL +KY D+VRVV + G SS CGGTHV + Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T +I + I SES++ AG+RRIEA+T ++A +L + + L + +K ++ N+V ++ Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKI 736 Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806 + + + Q I+A + Q+ DL+ ADVN M+ Sbjct: 737 DSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMN-------- 788 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 +L+ + D + +S +++L KA+++I + + LD+ A +L +++A + G Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-ENAGKANMIIALGQKALDKGLKAGNLIKIAAPIF-G 845 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGGGRP+MAQ+GG N + AI V + K Sbjct: 846 GGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISK 878 >gi|255534656|ref|YP_003095027.1| alanyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10] gi|255340852|gb|ACU06965.1| Alanyl-tRNA synthetase [Flavobacteriaceae bacterium 3519-10] Length = 893 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 339/932 (36%), Positives = 507/932 (54%), Gaps = 101/932 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL++FQ GH ++PS+ ++ +DPTLMF+NSGM FK+ F G + P + QK Sbjct: 6 IRQQFLDYFQSKGHLIVPSAPIVLKDDPTLMFSNSGMTQFKDYFLGYKDPKAPRIADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDLD+VGR HHT FEMLGN+SFG YFKE AI AW+LLT+ + + + LY Sbjct: 66 CLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGDYFKEEAIGFAWELLTEVYKIPKEDLY 125 Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +TV++ D++A+ WKK + +II DNFW M E+GPCGPCSEI D Sbjct: 126 VTVFEGDSVEDLARDQDAYNFWKK--HIDEGRIINGNKKDNFWEMGESGPCGPCSEIHVD 183 Query: 179 QGECIPGGLPGS----SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 G+ + + + + +EIWNLVFM+F ++ LP +DTGMG ER+ Sbjct: 184 LRTAEEKGMVSALDLVNNDHPQVVEIWNLVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADGI 290 LQ KT+NYD D+F LIQ E+++G++Y G + RV+VDH+R+ +F IADG Sbjct: 244 MALQGKTSNYDTDVFTPLIQKVEEISGLRYTGILTDEKDIAIRVVVDHIRAVAFAIADGQ 303 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+N G GYV+RRI+RRA+ YA R LG E + L+ L TEMGS + EL + + L+ E Sbjct: 304 LPSNGGAGYVIRRILRRAISYAYRFLGMKEAFLFELVGVLQTEMGSYFAELSRQQKLVTE 363 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSH-LGKDE-ILNGDVAFKLYDTHGLPLDIMQDILCA 407 ++ E+ F KT++ GL +D V++ + K+E L G F+LYDT+G P D+ + I Sbjct: 364 VIKEEEISFLKTIELGLKRIDLVINDTISKNEKTLPGAAVFELYDTYGFPADLSRIIAEE 423 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLRG 465 + L ID FN+ + +Q+ R++ S +K+ W L+EK QF+GYD Sbjct: 424 QQLT-IDEAGFNEEMAKQKQRSKKSS-------AQKVYDWVILEEK--EQQFVGYDDTET 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++ RKV E G+ ++V ++PFY E G Sbjct: 474 ETYITRYRKV----------------------------ENKDGEYYQIVLSKSPFYPEGG 505 Query: 526 GQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHH------AIVERGILRTEMSLVLT---- 574 GQ+GD G + + I QK + + + ++E R E +L+++ Sbjct: 506 GQVGDHGILVPSYAKNFNIVSPQKFLDQLASENNSDRPSEVIEVLDTRKENNLIISLIKE 565 Query: 575 ------------IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622 ++ RR NHS THLLH AL +LG+HV Q GS + P+ LRFD + Sbjct: 566 MPKDAGAVFYAKVNRDERRNTQANHSVTHLLHEALREVLGTHVEQKGSFVGPEYLRFDFS 625 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSV 681 H +T ELK +E+ VN I +N+ + R + +A+ GA AL G KY D VR++ Sbjct: 626 HFAKLTDEELKLVEEKVNTKIKENISLEEFRNIPISEAMEKGAMALFGEKYGDNVRMIQF 685 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 S LCGGTHV +T EI I SESS AGIRRIEAI G +A ++ + + Sbjct: 686 G------TSRELCGGTHVRNTAEIGFFKIQSESSTAAGIRRIEAIAGDQATAYFNNLESQ 739 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRKLQLNVEDLSCH----KIADVNF 796 K +++ LK ++ VE++ EE L+ I A +K + E + + A Sbjct: 740 FKEISALLKTK--DISKTVEKLLEENAALKSEIEAFKKEKAKAETGNWKNDFTESAGKKL 797 Query: 797 MSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + +S +DS +K ++ L+K++ +I+++ + K + + V+ DL +++A ++ Sbjct: 798 LVKKVS-LDSASVKDIVFQLKKEVAGSVIIIIS-DADGKPMITVGVSADLETQYHAGNIV 855 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 + AK + GGGGG P A +GG N D+A Sbjct: 856 KELAKEIQGGGGGN-PGFATAGGKNLAGIDEA 886 >gi|307564458|ref|ZP_07626999.1| alanine--tRNA ligase [Prevotella amnii CRIS 21A-A] gi|307346818|gb|EFN92114.1| alanine--tRNA ligase [Prevotella amnii CRIS 21A-A] Length = 884 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 332/933 (35%), Positives = 494/933 (52%), Gaps = 90/933 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR ++ +FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G + P + T Sbjct: 3 ANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKSPEPRRRTD 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L L ++ Sbjct: 63 SQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHLSEK 122 Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 +Y+TV++ D+EA K W K L D II +DNFW M +TGPCGPC+EI Sbjct: 123 DIYVTVFEGSKDENIPRDDEAAKYWSK--HLPKDHIINGNKHDNFWEMGDTGPCGPCTEI 180 Query: 176 FFDQGECIP-GGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 D G+ G +++ + IEIWN+VFMQF +++ L IDTGMG E Sbjct: 181 HIDSRPLDERNGVLGRDLVNKDDPQVIEIWNIVFMQFNRKSDGSLEPLAMNVIDTGMGFE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------------EGNNI-VNHRVIV 276 R+ +LQ K +NYD D+F+ +I+ E ++ KY E I V RVI Sbjct: 241 RLVRMLQGKHSNYDTDIFQPIIKRIEALSNYKYGFTSPTGKDGECLTEQEKIDVAMRVIA 300 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DHLR+ +F IADG LP+N GYV+RRI+RR + YA L E M LLP L +EMG+ Sbjct: 301 DHLRAVAFSIADGQLPSNAKAGYVIRRILRRGVRYAYTFLNQREAFMYKLLPTLVSEMGA 360 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDT 393 AYPEL + LI ++ E++ F +TL++G+ LL+G + L L+G AF+L+DT Sbjct: 361 AYPELSAQEELIGRVIKEEEDSFLRTLEKGITLLNGAMDELKAHGQSCLDGKEAFRLFDT 420 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G PLD+ + ++C +D F+ + +Q++RAR ++ T W +++ G Sbjct: 421 YGFPLDLTE-LICRENGYTVDEKQFDMEMSQQKARARNAAV-----TENGDWMIVRQ--G 472 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 F+GYD + RKV +K EV Sbjct: 473 EQTFVGYDYTEYECRILRYRKVTQKKHSF----------------------------YEV 504 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 V D TPFY E GGQ+GD G + + + + D K+ +H I+E E S + Sbjct: 505 VLDNTPFYGEMGGQVGDQGVLVSEQETVNVLDT-KRENNQSIH--IIEELPKNVEASFMA 561 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D R + NH+ATHLL +AL +LG H Q GS ++P LRFDV+H + IT EL+ Sbjct: 562 CVDTDKREASAANHTATHLLDYALKEVLGEHAEQKGSYVSPTTLRFDVSHFQKITDEELR 621 Query: 634 SIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 +E VN I + R E+A GA AL G KY D+VRVV S Sbjct: 622 KVERIVNGFIRADYSCDEHRDTPIEEAKKMGAVALFGEKYGDKVRVVRFG------PSCE 675 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF---- 748 CGG H STG I IV ESS+ AG+RRIEA+TG + + Q++ L+ L Sbjct: 676 FCGGIHAKSTGSIGFFKIVGESSVAAGVRRIEALTGANSEEAIYTQEDTLRDLKQMLNNP 735 Query: 749 --LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 LKV+ + E + ++ L+ R + +E S ++ V+ + ++ EVDS Sbjct: 736 KDLKVALKKYIEEHEAMKKDMESLRKQGVARHAKTLIE--SAKEVDGVHIVKAVL-EVDS 792 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVLG 864 K ++ +++ S +I ++G + + +++++D++ + NA + R +A+++ Sbjct: 793 SSAKDIVFKVREAFDSKLICVLGSVSGNRPQISVMLSDDMVKEGKKNAGKVIREAAQLI- 851 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GGGGG+ H AQ+GG + + D A+ LK Sbjct: 852 KGGGGGQAHYAQAGGKDASNIDAAVDKAVELLK 884 >gi|293381586|ref|ZP_06627573.1| alanine--tRNA ligase [Lactobacillus crispatus 214-1] gi|290921856|gb|EFD98871.1| alanine--tRNA ligase [Lactobacillus crispatus 214-1] Length = 879 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 348/933 (37%), Positives = 519/933 (55%), Gaps = 96/933 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P +T Sbjct: 5 NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT L Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I +E++T G KY N + ++I DH+R+ SF IADG Sbjct: 235 LSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAISFAIADGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF TLD GL LLD ++ + KD+ ++G AFK++DT+G P ++ + Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ + Q+ RAR L S G + ++K+K S Sbjct: 415 GLK-VDKKGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F ++ ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ Sbjct: 460 FERD----TYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581 + D G L ++TDVQ +H VE+G VL +D + R Sbjct: 507 VADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKLDKERRE 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELK++E+ VN Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQ 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + V T I E+ GA AL +KY D+VRVV + G SS CGGTHV + Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T +I + I SES++ AG+RRIEA+T ++A +L + + L + +K ++ N+V ++ Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKI 736 Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806 + + + Q I+A + Q+ DL+ ADVN M+ Sbjct: 737 DSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMN-------- 788 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 +L+ + D + +S +++L KA+++I + + LD+ A +L +++A + G Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-ENAGKANMIIALGQKALDKGLKAGNLIKIAAPIF-G 845 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGGGRP+MAQ+GG N + AI V + K Sbjct: 846 GGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISK 878 >gi|330998231|ref|ZP_08322057.1| alanine--tRNA ligase [Paraprevotella xylaniphila YIT 11841] gi|329568923|gb|EGG50721.1| alanine--tRNA ligase [Paraprevotella xylaniphila YIT 11841] Length = 871 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 338/917 (36%), Positives = 501/917 (54%), Gaps = 77/917 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +F++FF+ GH ++PS+ ++ +DPTLMFTN+GM FK+I G + T Sbjct: 4 NEIRDSFVKFFESKGHLIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNRPATSKRCTDS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+ L +D+ Sbjct: 64 QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVDVLKIDKSN 123 Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LY TV+ + D EA W+K L AD II +DNFW M TGPCGPCSEI Sbjct: 124 LYATVFEGSPEEGLERDNEAASYWEKF--LPADHIINGNKHDNFWEMGATGPCGPCSEIH 181 Query: 177 FD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 D + E +PG +++ IEIWNLVFMQ+ ++ Q LP IDTGMG ER Sbjct: 182 IDLRPEEEKAKVPGRELVNKDNPLVIEIWNLVFMQYNRKADQSLEPLPAKVIDTGMGFER 241 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 + V+Q K +NYD D+F+ +I+ ++ +Y + V RV+ DHLR+ +F IADG Sbjct: 242 LCAVMQGKRSNYDTDVFQPIIRVIGDLSDCRYGEDPKKDVAMRVVADHLRTIAFSIADGQ 301 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP N GYV+RRI+RRA+ YA LG E M LLP L EMG +YPEL K+LI + Sbjct: 302 LPGNAKAGYVIRRILRRAVRYAYTFLGQKEAFMYKLLPVLVQEMGKSYPELEAQKVLISK 361 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 ++ E++ F +TL+ G+ LLD V++ GK +++G AF L+DT+G PLD+ + ++C Sbjct: 362 VMKEEEDSFLRTLETGIRLLDRVMAETRASGKT-VIDGVEAFTLFDTYGFPLDLTE-LIC 419 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +D +F+ +++Q+ RAR ++ + +G W ++E G T+F G+D Sbjct: 420 RENGMTVDEETFHAEMQKQKERAR-NAAAVETGD----WVVVRE--GETEFKGWDYTEHE 472 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + RKV +K ++V D TPFYAE GG Sbjct: 473 CHILRYRKVTQKKQTF----------------------------YQIVLDYTPFYAEMGG 504 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q+GD G + ++I D K+ + VH I + E + +D R N Sbjct: 505 QVGDRGVLCSEHETIEIVDT-KRENNLPVH--IAKTLPEHPEADFMACVDTDLRAASEAN 561 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ THLL AL T+LG HV Q GS +TP+ LRFD +H + +T +L+ +E VN I ++ Sbjct: 562 HTCTHLLDQALRTVLGEHVEQKGSLVTPEYLRFDFSHFQKVTDEQLREVERIVNAKIRED 621 Query: 647 LPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 LP+ R M E A GA AL G KY DRVRV V++ D S CGG H STG I Sbjct: 622 LPLQDHRDMPIEKAKELGAIALFGEKYGDRVRV--VQFGD----SVEFCGGCHAKSTGRI 675 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMG-QD--EKLKSLASFLKVSQGNVVGRVEE 762 ++ I+SESS+ AGIRRIEAITG++ + L QD +L++L + + ++ +EE Sbjct: 676 GMVKILSESSVAAGIRRIEAITGEKVENMLYTLQDLTNELRTLFNNAPDVKAAILKSIEE 735 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 ++++ ++ Q +S I + + I + + +K + L+ + Sbjct: 736 NAILKKQIEESMKEKAAQAKARIVSQAAIVNGVTLYRSILPMPADLVKDMAFQLRNGAED 795 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 ++ ++G E K + +++++ N + R +AK++ GGGGG+PH A +GG Sbjct: 796 ALV-IIGSLHEGKPMLTAAASDNMVKAHGMNVGKIVREAAKLI-QGGGGGQPHFATAGGK 853 Query: 881 NGNKADQAIAGVASFLK 897 N AD A V F++ Sbjct: 854 N---ADGLSAAVDKFVE 867 >gi|58336754|ref|YP_193339.1| alanyl-tRNA synthetase [Lactobacillus acidophilus NCFM] gi|227903315|ref|ZP_04021120.1| ala-tRNA synthetase [Lactobacillus acidophilus ATCC 4796] gi|75358009|sp|Q5FLW6|SYA_LACAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|58254071|gb|AAV42308.1| ala-tRNA synthetase [Lactobacillus acidophilus NCFM] gi|227868944|gb|EEJ76365.1| ala-tRNA synthetase [Lactobacillus acidophilus ATCC 4796] Length = 879 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 355/925 (38%), Positives = 522/925 (56%), Gaps = 92/925 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P + +T Sbjct: 5 NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K L Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I A+E++T G KY N+ ++I DH+R+ SF IADG Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTDGKKYGENDEDTTAFKIIADHVRAVSFAIADGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEIMDQRGFIENV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF TLD GL LLD ++ D+ ++G AFK++DT+G P ++ + Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIEKAKNSDDKTISGKDAFKMFDTYGFPYELTFESAQDA 414 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ ++ Q+ RAR L S G + ++K+K S+ Sbjct: 415 GLK-VDKKGFDAEMQAQKDRARKARGDLQSMGRQDVTLMNIKDK--------------SE 459 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F + ++P L + IV ++V++A +G+ +VFD+TPFYAE GGQ Sbjct: 460 F----EYGVYEEPHAKLID--------IVVDDKLVDKA-NGEHATLVFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQL 583 + D G DG + ++TDVQ +H + IL E VL ID + R L Sbjct: 507 VADHGGIYNQDGELVAKVTDVQHAPNDQNLHFVDL---ILPMEKGQEYVLKIDKERREGL 563 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELKS+E+ VN I Sbjct: 564 RHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPRELKSVEELVNQKI 623 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + V T I E+ GA AL KY D+VRVV + SS CGGTHV +T Sbjct: 624 WDAIQVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----SDFSSEFCGGTHVDNTD 678 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEE 762 +I + I SES++ AG+RRIEA+T ++A +L + L + +K ++ N+V +++ Sbjct: 679 QIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQEVVKATKPENIVDKIDS 738 Query: 763 IWEEYRKLQ---------LIHAKR-KLQLNVE---DLSC-HKIADVNFMSHIISEVDSKE 808 I E R Q + AK ++ NV+ DL+ IADVN M+ + Sbjct: 739 IENELRDSQKQVEALTKKINQAKAGEIFDNVKQAGDLTVIAAIADVNGMN---------D 789 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867 L+ + D + +S +++L + KA+++I + + LD+ A DL + +A + GGG Sbjct: 790 LRELADNWKSGNKSDVLVLAA-ENDGKANMIISLDQRALDKGLKAGDLIKKAAPLF-GGG 847 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGV 892 GGGRP+MAQ+GG + AI V Sbjct: 848 GGGRPNMAQAGGKKPEGLNDAIKAV 872 >gi|254425077|ref|ZP_05038795.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7335] gi|196192566|gb|EDX87530.1| alanyl-tRNA synthetase [Synechococcus sp. PCC 7335] Length = 887 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 341/901 (37%), Positives = 502/901 (55%), Gaps = 63/901 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL F++ GH +L S+SL+P DPT++ T +GM+PFK IF GQ + TT Sbjct: 21 ADIRKQFLSFYEARGHRILDSASLVP-EDPTVLLTIAGMLPFKPIFLGQRSVEFDRATTS 79 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK +AI AW+L T+ F L R Sbjct: 80 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKAQAIAWAWELSTEIFKLPADR 135 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 + +++ +D+EAF +W+ G+ ++IIR+ DNFW TGPCGPCSE+++D Sbjct: 136 IVPSIFRDDDEAFAIWRDEIGIPENRIIRMGEADNFWKSGPTGPCGPCSELYYD-FHPER 194 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ NNY Sbjct: 195 GDDTIDLEDDTRFIEYYNLVFMQYNRDAEGNLEPLQAQNIDTGLGLERMAQILQGVPNNY 254 Query: 245 DIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +IQA+ Q+ + Y V+ +VI DH+R+ ++ADGI +N GRGYVL Sbjct: 255 ETDLILPIIQAAAQIANLDYHQATDAQKVSLKVIGDHVRAVMHMVADGISASNVGRGYVL 314 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG P + AYP + + I+ L E+ +F +T Sbjct: 315 RRLIRRVVRHGRLLGIDRPFTTEVAERSIALTEDAYPAVRTRETAIKNELDREETQFLQT 374 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L RG L +L+ K ++G AF+LYDT+G PL++ Q+I G+ +D F Sbjct: 375 LARGEKRLADILAEQPKQ--VSGKDAFELYDTYGFPLELTQEIAEESGIT-VDTERFEIE 431 Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + +QR R++A ++ L T + +L E+ +T+FIGY L Sbjct: 432 MSQQRERSKAAHETIDL---TVQSSLDTLAEQIDSTEFIGYQRLNS-------------- 474 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 S V+AI+ GE V+ A +G V++V DQTPFYAE+GGQ+GD G GD + Sbjct: 475 ---------QSRVEAILINGESVDLAETGDDVQIVLDQTPFYAESGGQIGDRGYLSGDTV 525 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 ++I DV+K+ FVH VERG L + + ID RR+ NH+ATHLL AL + Sbjct: 526 VIRIEDVKKEG-AFFVHFGKVERGSLTVDSQVSAQIDRACRRRAQANHTATHLLQAALKS 584 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ +SQ GS + D LRFD + +T +L+ +E VN IA+ + M +A Sbjct: 585 LVNESISQAGSLVDFDRLRFDFHCPQALTPEQLQQVEKQVNSWIAEAHDADVQTMPIAEA 644 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A GA A+ G KY D VRV+ GV S LCGGTHVS+T EI + I+SE+ I AG Sbjct: 645 KAKGAVAMFGEKYGDEVRVIDYP----GV-SMELCGGTHVSNTAEIGVFKIISETGIAAG 699 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKR 777 IRRIEA+ G +L +D ++ L++ K + RV + E + Q L K Sbjct: 700 IRRIEAVAGPAVLDYLEVRDRIVRDLSARFKTKPEEISDRVTALQTELKNAQKDLAALKS 759 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEK 834 +L L D +K + + I++ +++ E LK+ + L +K+ G ++L + E Sbjct: 760 ELALAKSDQLLNKAEAIGGIPIIVANLEAVEADALKTAAERLLQKLGDGAVVLGSVPTEG 819 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGG------GGGGGRPHMAQSGGPNGNKADQA 888 K S++ ++ ++ + + K +GG GGGGGRPH AQ+GG + K +A Sbjct: 820 KVSLVAAFSKPVISK------GLQAGKFIGGIAKLTGGGGGGRPHFAQAGGRDATKLPEA 873 Query: 889 I 889 + Sbjct: 874 L 874 >gi|284801894|ref|YP_003413759.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5578] gi|284995036|ref|YP_003416804.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5923] gi|284057456|gb|ADB68397.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5578] gi|284060503|gb|ADB71442.1| alanyl-tRNA synthetase [Listeria monocytogenes 08-5923] Length = 832 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 343/879 (39%), Positives = 491/879 (55%), Gaps = 78/879 (8%) Query: 47 KNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERA 106 K F G P + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE A Sbjct: 2 KKYFDGSVIPDNPRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGA 57 Query: 107 IQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164 I AW+ LT K D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + Sbjct: 58 IVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG 115 Query: 165 ETGPCGPCSEIFFDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ 214 GP GP SEIF+D+G E PGG E ERY+EIWNLVF QF Sbjct: 116 -IGPSGPDSEIFYDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDG 168 Query: 215 ERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNH 272 LPK +IDTGMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V Sbjct: 169 TYTPLPKQNIDTGMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAF 228 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 +VI DH+R+ +F I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + Sbjct: 229 KVIADHIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKI 288 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKL 390 M S YPE+ I++ +R+E+ERF +TL+ GL +L+ +L + ++++ G FKL Sbjct: 289 MNSFYPEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQVIKGADIFKL 348 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLK 449 YDT G P+++ ++ GL +D F ++EQR+RARA + S + ++ +L Sbjct: 349 YDTFGFPVELTEEYAEDHGLK-VDHAGFEAEMKEQRARARAARADVKSMQVQGELLANLT 407 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 EK + F+GY+ T VS I+ ++Q +V+E +G Sbjct: 408 EK---SAFVGYNS----------------------TEHVSEIL-YLIQNDTLVDEVAAGN 441 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 + +V+F +TPFYAE+GGQ+ D G + + DVQK +H V+ G+L+T Sbjct: 442 EAQVIFKETPFYAESGGQVADKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGD 501 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ L +D RR+ NH+ATHLLH AL LG HV+Q GS ++PD LRFD +H IT Sbjct: 502 TVKLAVDRVKRRETIKNHTATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITE 561 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL +E+ VN+ I + + VV M +A GA AL G KY D VRVV V G + Sbjct: 562 EELTKMEEIVNEKIWEQINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQV-----GKY 616 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 S LCGG HV +T +I L IVSE+ I AG RRIEA+TG+ A + Q+ LK AS L Sbjct: 617 SIELCGGVHVRNTADIGLFKIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLL 676 Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----------VNFMSH 799 K + +VE + + R++ KR+ + + L+ AD V ++ Sbjct: 677 KTTTKETPQKVELLQADLREV-----KRENESLLSKLASAASADIFESPEEIGGVKVIAK 731 Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859 ++ D +L+ +D + K GI++L + +K + V E + ++A L + Sbjct: 732 QVNAKDMNQLRQFVDNWKDKKIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEV 791 Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A GG GGGRP MAQ+GG N + A+ V++++K+ Sbjct: 792 ATRC-GGNGGGRPDMAQAGGKNPAELRTALDYVSTWVKE 829 >gi|282859190|ref|ZP_06268312.1| alanine--tRNA ligase [Prevotella bivia JCVIHMP010] gi|282588009|gb|EFB93192.1| alanine--tRNA ligase [Prevotella bivia JCVIHMP010] Length = 885 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 333/936 (35%), Positives = 500/936 (53%), Gaps = 90/936 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++ +FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G + P + Sbjct: 1 MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L L Sbjct: 61 RTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVDVLHL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D+EA + W + L AD II +DNFW M + GPCGPC Sbjct: 121 DPKDLYVTVFEGSPEENIPRDDEAAQYW--LKHLPADHIIDGNKHDNFWEMGDIGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 +EI D + E G+PG +++ + IEIWN VFMQF ++ L IDTGM Sbjct: 179 TEIHIDSRPENERNGIPGRELVNKDDPQVIEIWNNVFMQFNRKADGSLEPLAMNVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVNHR 273 G ER+ +LQ K +NYD D+F+ +I+ E ++ KY E N V R Sbjct: 239 GFERLVRMLQGKHSNYDTDIFQPIIKEIEAISNFKYGFTTPSGKDGECANDQEKVDVAMR 298 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332 VI DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L E M LLP L E Sbjct: 299 VIADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLNQREAFMFKLLPTLVRE 358 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKL 390 MG AYPEL + LI ++ E++ F +TL++G+ LL G + L L+G AF+L Sbjct: 359 MGGAYPELPAQQELIGRVIKEEEDSFLRTLEKGISLLSGAMDELKAHNQTELDGKEAFRL 418 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 +DT+G PLD+ + ++C +D F++ + +Q++RAR ++ + +G W +K+ Sbjct: 419 FDTYGFPLDLTE-LICRENGYTVDEKQFDEEMAQQKARARNAAV-VENGD----WMIVKD 472 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 G +F+GYD + RKV +K Sbjct: 473 --GEQEFVGYDYTEYECHILRYRKVTQKKNSF---------------------------- 502 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 E+V D TPFY E GGQ+GD G + + +++ D K+ VH IV+ E Sbjct: 503 YEIVLDYTPFYGEMGGQVGDQGVLVSEDETIEVIDT-KRENNQSVH--IVKEMPKDIEAD 559 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +D R + NH+ATHLL +AL +LG H Q GS ++P LRFDV+H + IT Sbjct: 560 FMACVDTDKRNASAANHTATHLLDYALKQVLGEHAEQKGSYVSPTTLRFDVSHFQKITDE 619 Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL+ +E VN++I ++ + R ++A GA AL G KY D+VRVV Sbjct: 620 ELRQVERLVNELIREDYILDEHRNTPIDEAKKMGAVALFGEKYGDKVRVVKFG------P 673 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF- 748 S CGG H +STG I IVSESS+ AGIRRIEA+TG + + Q++ L L + Sbjct: 674 SCEFCGGIHATSTGRIGFFKIVSESSVAAGIRRIEALTGANSEEAIYDQEDTLTELKAMF 733 Query: 749 -----LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803 LK + E + +E + R + +E ++ +N + +++ Sbjct: 734 NNPKDLKAVVQKYIDEHEAMKKEMESSRQQGVARHAKALIE--GVEQVDGLNIVKAVLN- 790 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAK 861 VD+ K ++ +++ I ++ ++G + + + I++++D++ NA + R +A+ Sbjct: 791 VDAASAKDIVFKVREAITEKLVCVLGSVNDNRPQLSIMLSDDMVKEGGKNAGKIIREAAQ 850 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 ++ GGGGG+PH AQ+GG + + A+ LK Sbjct: 851 LI-KGGGGGQPHYAQAGGKDASNLSAAVDKALELLK 885 >gi|227877600|ref|ZP_03995654.1| alanyl-tRNA synthetase [Lactobacillus crispatus JV-V01] gi|256849054|ref|ZP_05554487.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US] gi|262047536|ref|ZP_06020491.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US] gi|227862794|gb|EEJ70259.1| alanyl-tRNA synthetase [Lactobacillus crispatus JV-V01] gi|256713830|gb|EEU28818.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-1A-US] gi|260572112|gb|EEX28677.1| alanyl-tRNA synthetase [Lactobacillus crispatus MV-3A-US] Length = 879 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 348/933 (37%), Positives = 519/933 (55%), Gaps = 96/933 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P +T Sbjct: 5 NSSEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT L Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPDWLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY +DE++F +W K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 121 PKEKLYCTVYPKDEDSFNVWVK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I +E++T G KY N + ++I DH+R+ SF IADG Sbjct: 235 LSILQDAPTNFETDLFLPIIHTTEEMTPGKKYGENKEDTTAFKIIADHVRAISFAIADGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF TLD GL LLD ++ + KD+ ++G AFK++DT+G P ++ + Sbjct: 355 IQNEEERFQSTLDTGLTLLDDLIDKAKKSKDKTISGKDAFKMFDTYGFPYELTFESAQDA 414 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ + Q+ RAR L S G + ++K+K S Sbjct: 415 GLK-VDRKGFDAEMAAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SV 459 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F ++ ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ Sbjct: 460 FERD----TYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581 + D G L ++TDVQ +H VE+G VL +D + R Sbjct: 507 VADHGKIYNQNGELVAEVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKLDKERRE 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T ELK++E+ VN Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTKRELKTVEELVNQ 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + V T I E+ GA AL +KY D+VRVV + G SS CGGTHV + Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDSKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T +I + I SES++ AG+RRIEA+T ++A +L + + L + +K ++ N+V ++ Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSDLLDDIQEEVKATKPDNIVDKI 736 Query: 761 EEIWEEYRKLQ--------LIHAKRKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806 + + + Q I+A + Q+ DL+ ADVN M+ Sbjct: 737 DSLESDLHDAQKQVETLNKKINAAKAGQIFNDVKQAGDLTVIAATADVNGMN-------- 788 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 +L+ + D + +S +++L KA+++I + + LD+ A +L +++A + G Sbjct: 789 -DLRELADNWKSGNKSDVLVLAA-ENAGKANMIIALGQKALDKGLKAGNLIKIAAPIF-G 845 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGGGRP+MAQ+GG N + AI V + K Sbjct: 846 GGGGGRPNMAQAGGKNPAGLNDAIKAVIDEISK 878 >gi|307637915|gb|ADN80365.1| Alanyl-tRNA synthetase [Helicobacter pylori 908] gi|325998103|gb|ADZ50311.1| Alanyl-tRNA synthetase [Helicobacter pylori 2017] Length = 847 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 338/890 (37%), Positives = 498/890 (55%), Gaps = 65/890 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FFQ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ + LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSSNGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L+ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMAEISELTSLDYASEFKPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFEHC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++EQ R++A G + + ++ Y F+GY+ Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYE-------------------- 452 Query: 482 IDLTNGVSSIVKAIVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-GDGI 539 T S+ G + + EA Q+V V+ ++TPFYAE GG +GD G + GD Sbjct: 453 ---TTECSAKALGFFDSGFKEMTEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKGDEE 509 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + D K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 510 AALVLDT-KNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERFEIAKHHSATHLLQSALRE 566 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 +LGSHVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M A Sbjct: 567 VLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLKSQVEHMPLNQA 626 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA AL KY + VRVVS + S LCGG HV +TG I IV ES + +G Sbjct: 627 KDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVSSG 681 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 +RRIEA+ G+ ++++LK+ LK +V+ + ++ E + Q K + Sbjct: 682 VRRIEAVCGKAFYQLAKEENKELKNAKILLK--NNDVIAGINKLKESVKNSQ----KAPV 735 Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 + DL KI V+ + ++ + D KE+ +D L+ K + + M+ KE + L Sbjct: 736 PM---DLPVEKIHGVSLVVGVVEQGDIKEM---VDRLKSKHERLLAMV--FKKENEHITL 787 Query: 840 IVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + NA A A++L GG GGGR A +GG + K A+ Sbjct: 788 ACGVKNAPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAAL 834 >gi|298229736|ref|ZP_06963417.1| alanyl-tRNA synthetase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254206|ref|ZP_06977792.1| alanyl-tRNA synthetase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502666|ref|YP_003724606.1| alanine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A] gi|298238261|gb|ADI69392.1| alanine--tRNA ligase [Streptococcus pneumoniae TCH8431/19A] Length = 872 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 349/926 (37%), Positives = 508/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVTQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 498 PFYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K + +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|289167595|ref|YP_003445864.1| alanyl-tRNA synthetase [Streptococcus mitis B6] gi|288907162|emb|CBJ21996.1| alanyl-tRNA synthetase [Streptococcus mitis B6] Length = 872 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 349/929 (37%), Positives = 511/929 (55%), Gaps = 90/929 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESHFNYNASQ--- 467 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 +SS + AIV V EAVS ++F +TP Sbjct: 468 ----------------------------LSSKLVAIVADNTEV-EAVSEGTASLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDT 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTADELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKTPQLKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC------HKIADVNFMSHIISEV---DSK 807 +VE + E+ R+LQ K +L + S + +VN +I S+V D+ Sbjct: 733 PHKVEGLQEQLRQLQ----KENTELKEKAASAAAGDIFKDVKEVNAHRYIASQVSVSDAG 788 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867 L++ D ++K S +++LV +K ++ T+DL +A +L + A ++ G Sbjct: 789 ALRTFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGR 843 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGG+P MA +GG N K + + VA L Sbjct: 844 GGGKPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|307705063|ref|ZP_07641945.1| alanyl-tRNA synthetase [Streptococcus mitis SK597] gi|307621386|gb|EFO00441.1| alanyl-tRNA synthetase [Streptococcus mitis SK597] Length = 872 Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust. Identities = 346/925 (37%), Positives = 508/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +TP Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDT 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDADALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K V ++V + D +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDK---VNVLVASKIKD-LHAGNLVKELAPIV-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|325963401|ref|YP_004241307.1| alanyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3] gi|323469488|gb|ADX73173.1| alanyl-tRNA synthetase [Arthrobacter phenanthrenivorans Sphe3] Length = 892 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 341/930 (36%), Positives = 508/930 (54%), Gaps = 82/930 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I +++FF GH +PS+SL+ +DP+L+FT +GMVPF T +E+ Y +VQK Sbjct: 6 ITKRWVDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYSRAVSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 C+R G D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT D LD Sbjct: 65 CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAWELLTTGVDDGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY+ED+EA LW K +G+ A++I ++ +DN+W + GP GPCSEI++D+G Sbjct: 121 PERLWVTVYEEDDEAKDLWLKNTGVPAERIQKMGKSDNYWHTGQPGPAGPCSEIYYDRGP 180 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFI----LPKMSIDTGMGLERM 233 + GG P + E RYIEIWNLVFMQ++ +N +E F LPK +IDTG+G+ER+ Sbjct: 181 AYGVEGG-PLADET--RYIEIWNLVFMQYQIENVRSKEDFDVVGELPKRNIDTGLGMERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284 A +LQ N Y+ D + +I + +++G +Y + V RV+ DH+RS+ Sbjct: 238 AMILQGVENMYETDQVRPVIDKAAELSGKEYTSAETDEDPHHTDDVRMRVVADHIRSALM 297 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI+DG+ P+NEGRGYVLRR++RRA+ RLLG + + LLPA M YP + Sbjct: 298 LISDGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEQACLPELLPASRDAMKGVYPVVDTDF 357 Query: 345 LLIEETLRSEDERFGKTLDRGLVLL-DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 I +E++ F +T+ G L D V ++ L+G+ AF L+DT+G P+D+ + Sbjct: 358 ARISRIAYAEEKAFLRTIASGTARLEDAVRESKAANKPLSGEDAFTLHDTYGFPIDLTLE 417 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + GL +D +F ++EQR RA+A + G G + F G T F GY L Sbjct: 418 MAEEAGLK-VDEAAFRSLMQEQRQRAQADAKGKKGGHADLSAFQELLGQGETVFTGYSEL 476 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 G S V+ I+ G V++A +G ++E+V +TPFYAE Sbjct: 477 DGE-----------------------SRVRGILTGGRPVQQASTGDEIELVLAETPFYAE 513 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 AGGQ DTG GDG +++ DVQ+ +G+ VH AIV G + + + +D + R Sbjct: 514 AGGQAADTGLITGDGFVVEVLDVQRPLKGLSVHKAIVREGEIGADSLVRAAVDRERRHAA 573 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 H+ TH++H AL ILG +Q GS LRFD + +++A IE+ N I Sbjct: 574 EQAHTGTHIVHAALHQILGPEATQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVSNLAI 633 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N V T++M +A A GA AL G Y + VRVV ++ G S LCGGTHVS+T Sbjct: 634 RNNYAVDTKVMPLAEAKALGAMALFGENYGNEVRVVEID----GAWSRELCGGTHVSNTS 689 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV--- 760 I L ++ E S+ +G RR+EA G A HL + + L LKV G + R+ Sbjct: 690 LIGSLSLLGEQSVGSGNRRVEAFVGMDAFRHLAAERALVTELTEMLKVPSGQLADRIATT 749 Query: 761 -------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD-SKELKSV 812 E+ + RK QL + +L D V+ ++H +V + +++ + Sbjct: 750 LAKLKATEKELDRLRKEQLAASAAQLVSTATD-----AGGVSVIAHDAGQVSGADDIRGL 804 Query: 813 MDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGG 868 L+ ++ SG + + G+S ++ V++V T + A L RL+A +L GGGG Sbjct: 805 ALDLRNRLGSGAATVAVAGVSNDR--PVILVATNEAAREAGVKAGALVRLAAGIL-GGGG 861 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GG+ +AQ GG + K QA+A V + + Sbjct: 862 GGKDDVAQGGGTDAGKVPQALAAVVDAISR 891 >gi|157412393|ref|YP_001483259.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215] gi|205830179|sp|A8G242|SYA_PROM2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157386968|gb|ABV49673.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. MIT 9215] Length = 886 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 334/917 (36%), Positives = 528/917 (57%), Gaps = 78/917 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+F+ + H+++PS+SL+P +DPT+M T +GM+PFK +F G +E+P +A T+ Q Sbjct: 15 IRNAFLKFYSEKFHKIIPSASLVP-DDPTVMLTIAGMLPFKPVFLGLKERPSKRA-TSSQ 72 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVG T RHHTFFEMLGNFSFG YFK AIQ AW+L+TK + L + Sbjct: 73 KCIRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREAIQWAWELVTKIYKLSSENI 128 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++++ EDEE+ K+W + G++ D+I+++ DNFWS +TGPCGPCSE+++D Sbjct: 129 IVSIFHEDEESEKIWIEEIGINPDRIVKLGEKDNFWSSGKTGPCGPCSELYYDFNP--EK 186 Query: 186 GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 GL E+G+R+IE +NLVFMQ + + + L +IDTGMGLERMA +LQ+K+NNY Sbjct: 187 GLKYVDLEDGDRFIEFYNLVFMQHNRDSNGKLTDLKFKNIDTGMGLERMAQILQKKSNNY 246 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +IQ + +++ + Y + ++ +++ DH R+ LI+DG+ +N GRGY+L Sbjct: 247 ETDLIFPIIQKASKISSINYFSSDERTKISFKILGDHTRAVIHLISDGVSASNLGRGYIL 306 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG + + + M + YP+L LI ++ E+ RF +T Sbjct: 307 RRLLRRMVRHGRLLGIKKEFLSDIASVGIKLMENNYPDLKNNNELILSEIKIEEVRFRET 366 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LLD ++S K +++G AF+LYDT+G PL++ ++I + +DI F + Sbjct: 367 LERGEKLLDEIISSGQK--LISGFKAFELYDTYGFPLELTEEIAGENNIK-VDIEGFQRE 423 Query: 422 LEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++ Q+ RA+A S + G+ E+ DL + F ED C Sbjct: 424 MDAQKERAKAASSNIDLTLEGSLER---------------EIDLFNKTIFNGED----CL 464 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + ++ I +V++A GQ+V++V DQT FY E+GGQ+GD G Sbjct: 465 DS--------EAKIQGIFLDSNLVKKASEGQRVQIVLDQTSFYGESGGQVGDNGIICSTD 516 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + + V +K + +F+H IV+ GI ++ ++ R + S NH+ATHLL AL Sbjct: 517 AEILVDKVVRK-KNVFLHDGIVKNGIFTVGQTIKTVVNPAKRVRASANHTATHLLQSALK 575 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 ++ +VSQ GS + + LRFD SKP++ +++ +E VN I QN P+V + M + + Sbjct: 576 EVVNKNVSQKGSLVAFNKLRFDFNASKPVSEDQIRKVESLVNSWIIQNHPLVIKNMPKRE 635 Query: 659 AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRA 718 A+ GA A+ G KY D VRVV V GV S LCGGTHV +T E+ I+SE I A Sbjct: 636 ALEKGALAMFGEKYGDEVRVVDVP----GV-SMELCGGTHVKNTSELGCFKIISEEGISA 690 Query: 719 GIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRK 778 G+RRIEA++GQ A + ++ + L+ LK + + RV + E LI+ ++ Sbjct: 691 GVRRIEALSGQSAFDYFSERNFLVNKLSDLLKANPSQLFDRVNNLQSE-----LINKNKE 745 Query: 779 LQLNVEDL------SCHKIAD-VNFMSHIISEVDSKELKSVMD-ALQKKIQSG---IIML 827 +Q +++ S H A+ VN S +++++D + S+ AL Q G +++L Sbjct: 746 IQKMKDEIAYFKYSSLHSSAEIVNSFSILVNQIDGLDGDSLQSAALNLTSQLGNKSLVIL 805 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGGPN 881 GI + +L VV+ L D AV + + K++ GGGGG+P+ AQ+G + Sbjct: 806 GGIPNPENRKLLFVVS--LGDE--AVKIGLHAGKLINEIARICAGGGGGKPNFAQAGARD 861 Query: 882 GNKADQAIAGVASFLKK 898 +K D A+ + L+K Sbjct: 862 IDKLDFALDYAKNHLQK 878 >gi|296110668|ref|YP_003621049.1| alanine--tRNA ligase [Leuconostoc kimchii IMSNU 11154] gi|295832199|gb|ADG40080.1| alanine--tRNA ligase [Leuconostoc kimchii IMSNU 11154] Length = 893 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 355/942 (37%), Positives = 514/942 (54%), Gaps = 108/942 (11%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF GHE++PS +LIP +DPTL++ NSG+ K F G P +T Sbjct: 7 AEVRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSVIPNNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEM+GNFS G YFK+ I AW+LLT + LD+ Sbjct: 67 QKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKDDVIPWAWELLTSPEWYGLDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 LY+TVY +D+EA K+W++ + +S D I + DNFW + E GP GP SEIFFD+G Sbjct: 123 ELLYVTVYPKDQEAKKIWQEKTDISNDHIYEV--EDNFWDIGE-GPSGPDSEIFFDRGTS 179 Query: 181 ---------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTG 227 E PGG E ERY+EIWN+VF QF + + LP +IDTG Sbjct: 180 FQDLPDNDPEMYPGG------ENERYLEIWNIVFSQFNHLPGLTDNSQYPELPHKNIDTG 233 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGN----NIVNHRVIVDHLRSS 282 MGLER+ +V Q N+D DLF +IQA+ +++ Y+ N + + +VI DH+R+ Sbjct: 234 MGLERLVSVFQNGRTNFDTDLFLPIIQATSELSNNFVYDSNKDSDSNTSFKVIADHIRAI 293 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 +F I DG LP+NEGRGYV+RR++RRA+ + + LG + L+P + M S YPE+ + Sbjct: 294 TFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIQGEFLTTLVPIVGEIMKSYYPEISE 353 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLD 399 I++T+ +E++RF TL GL LL+ V+S + GK + L+G VAFKL DT+G PL+ Sbjct: 354 NTAKIQKTIAAEEKRFNATLTGGLALLNDVISDVKLAGKTQ-LSGAVAFKLSDTYGFPLE 412 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + Q+ GL +D++ FN+AL+ QR+RARA S + G + Sbjct: 413 LTQEQASDAGLT-VDVVGFNEALQAQRTRARAAR-------------STDKSMGVQNAVL 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-----IVEEAVSGQKVEVV 514 DL SK+ V + +D + V AI+ Q E +++ AV+ ++++V Sbjct: 459 TDLKVPSKY------VGWSETAVD-----GAEVVAIIGQNETGIDALLQTAVANSQLQLV 507 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 FD TPFYAE GGQ+ D G + D L +I DVQ G +H V + + Sbjct: 508 FDTTPFYAEMGGQVADFGDVLNDENTLIGKIIDVQNAPNGQHIHTVEVLSD-FKLGDKVN 566 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 L +D +S NH+ATH+L AL ++G + Q GS + P LRFD TH P++ A+L Sbjct: 567 LRVDMARHTAVSKNHTATHMLDQALRNVIGGDIHQAGSLVEPKYLRFDFTHEGPVSEADL 626 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 +I+ +N IA+NLPV + E A GA A+ G KY + VRVVS+ G + Sbjct: 627 DAIDTLINAEIAKNLPVSWLETDIETAKKMGAVAVFGEKYGELVRVVSI-----GEFNKE 681 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 GGTHV++T E+ L IVSES I AGIRRIEA+TG +A + +++ LK +A+ +K Sbjct: 682 FDGGTHVNATSELGLFKIVSESGIGAGIRRIEAVTGLQALALYKSEEKALKEIANAVKAQ 741 Query: 753 Q-GNVVGRVEEIWEEYRKLQ-LIHAKRKLQLN--VEDLSCHKIADVNFMSHIISEVDSKE 808 + V +V ++ E + Q +I + K N +D+ H I +N S+I ++ Sbjct: 742 KLTEVPTKVADVQTELKAAQRMIESLEKQLANAAADDVFTH-IETINDHSYITAK----- 795 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868 LQ G+ + KE K S ++V+ D+ + N + A A G G Sbjct: 796 -------LQVSGIDGLRQVADNWKETKPSDILVLAADVDGKVNLIVAASPDANAAGIKAG 848 Query: 869 G--------------GRPHMAQSGGPNGNKADQAIAGVASFL 896 GRP MAQ+GG N D A A VA FL Sbjct: 849 DLIKAIAPKVGGGGGGRPDMAQAGGKNPAGIDAAFASVADFL 890 >gi|169343614|ref|ZP_02864613.1| alanyl-tRNA synthetase [Clostridium perfringens C str. JGS1495] gi|169298174|gb|EDS80264.1| alanyl-tRNA synthetase [Clostridium perfringens C str. JGS1495] Length = 879 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 340/905 (37%), Positives = 518/905 (57%), Gaps = 64/905 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L FF+ H L S L+P ND +L+ N+GM P K FTG E+P + +TT Sbjct: 7 NELREKYLSFFESKDHLRLQSFPLVPKNDKSLLLINAGMAPLKPYFTGLEEPPKRRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R G D++NVG+T+RH TFFEMLGNFSFG YFK I AW+ +T+ + + + Sbjct: 67 QKCIRTG----DIENVGKTSRHGTFFEMLGNFSFGDYFKSEIIPWAWEFITETLGIPKDK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE--- 181 LY+T+Y D+EA+ +W + + +I R+ +DNFW + GPCGPC+EI FD+GE Sbjct: 123 LYVTIYLNDDEAYDIWTSKTDVDPSRIFRLGKDDNFWEIG-VGPCGPCTEIHFDRGEGKV 181 Query: 182 -CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 + L S + +R +E WNLVF QF++ + L + +IDTGMGLER+AT++Q Sbjct: 182 ETVEEFLEAS--DADRIVEFWNLVFTQFDKDEEGNYNELAQKNIDTGMGLERIATIMQGV 239 Query: 241 TNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N ++ID K+++ + ++T KY + + V+ R+I DH +S +FLI DG+ P+NEGRG Sbjct: 240 DNIFEIDTVKNILNKACELTNAKYGEDKDKDVSLRIITDHGKSVTFLICDGVQPSNEGRG 299 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA + RLLG + ++ A+ G AYPEL + I++ ++ E+ERF Sbjct: 300 YVLRRLLRRAARHGRLLGVKGIFLNEMVDAVVENYGEAYPELREKADYIKKIIKLEEERF 359 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D G+ +L +S + + +++L+G AFKLYDT+G PL++ Q+IL + L +DI Sbjct: 360 NETIDSGMDILMSYISEMEEKNEKVLSGAKAFKLYDTYGFPLELTQEILEEKCLE-LDIE 418 Query: 417 SFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +FN+ ++EQR RAR + +G K+ S+ T+F GY L Sbjct: 419 NFNKEMKEQRERARNARGESSYMGSEESPVNKVDASI-----VTEFDGYVNLE------- 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +S V + E E G++ ++ D+TPFYAE GGQ+GD Sbjct: 467 ----------------FNSKVIVLGNNEEFKAELKEGEEGFLLTDKTPFYAEMGGQVGDR 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G + +TD +K G FVH+ V G L+ + L++D R + NH+ATH Sbjct: 511 GNITSETGMAIVTDCKKNVGGKFVHYIKVIEGSLKEGQEVKLSVDASRRSNICKNHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 +LH AL +LG HV+Q+GS + + LRFD TH +T EL+ +E VN+ I V T Sbjct: 571 MLHEALKEVLGDHVNQSGSYVDEERLRFDFTHFAALTEEELEKVELLVNEKIMTVSVVDT 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + M+ ++A SGA L KY ++VRVVSV G S LCGGTHV+++GEI L IV Sbjct: 631 KEMSLDEARNSGATCLFDEKYAEKVRVVSV-----GDFSKELCGGTHVANSGEIGLFKIV 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-- 769 SES + AGIRRIEA+TG A + ++ LK AS LK ++ ++ R+ E ++ Sbjct: 686 SESGVAAGIRRIEAVTGISALKFMELKNNMLKEAASMLKCNEKDIAKRIAAQAHELKEKD 745 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIM 826 ++ K KL ED ++N + + +E VD L+ + D ++ K+ +GI++ Sbjct: 746 KEIAELKAKLVQGAEDDILKDKIEINGVELVTAELKDVDGNSLRDLADKVRNKLNNGIVV 805 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARL--SAKVLGGGGGGGRPHMAQSGGPNGNK 884 L K +++ + T++ L N V ++ + GGGGGGRP MAQ+GG N Sbjct: 806 LAS-GNGGKVNLVAMATKNSL--ANGVHCGKVIKEVAAVVGGGGGGRPDMAQAGGKNPEN 862 Query: 885 ADQAI 889 +A+ Sbjct: 863 IAKAL 867 >gi|303254539|ref|ZP_07340643.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS455] gi|301802125|emb|CBW34861.1| alanyl-tRNA synthetase [Streptococcus pneumoniae INV200] gi|302598507|gb|EFL65549.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS455] Length = 872 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 346/925 (37%), Positives = 507/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +TP Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|332074964|gb|EGI85436.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA41301] Length = 872 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 345/925 (37%), Positives = 508/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I + A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNHNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +TP Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|212696194|ref|ZP_03304322.1| hypothetical protein ANHYDRO_00730 [Anaerococcus hydrogenalis DSM 7454] gi|212676823|gb|EEB36430.1| hypothetical protein ANHYDRO_00730 [Anaerococcus hydrogenalis DSM 7454] Length = 867 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 323/901 (35%), Positives = 514/901 (57%), Gaps = 58/901 (6%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 ++ +R +L FF K H +L S SLIP +D +L+ N+GM P K FTG++K T Sbjct: 6 MNELRKEYLNFFGSKKNHTVLKSFSLIPEDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+C+R G D++ VG T RH TFFEMLGNFSFG YFK AI A++ LT+ ++++ Sbjct: 66 SSQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAYEFLTENLEINK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 L+++VY+ D+EA+K+W + GLS D+I+R DNFW + E GPCGP SEIF D+G Sbjct: 122 DLLWVSVYENDDEAYKIWNEEIGLSKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGVE 180 Query: 181 ECIP--GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + I PG +++ +R++E+WNLVF QF + +E L +IDTGMGLERMA VLQ Sbjct: 181 KAIDENDNKPG-NDDSDRFMEVWNLVFTQFNKNINKEYTPLLHPNIDTGMGLERMAMVLQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 K N ++ID+ +++I+ E+++ KY+ N + ++ RVI DH ++ +F+++DGI P+NE Sbjct: 240 NKDNIFEIDVNQNIIREIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEK 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + +LLG + ++ + Y EL+ K I ++ E+ Sbjct: 300 RGYVLRRLIRRAFRHGKLLGIEGEFLSSVIDCVIDSYKDEYDELVDRKDKIISVIKKEEA 359 Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F T+D GL +L+ + L + L+G AFKLYDT+G PLD+ ++IL L +D Sbjct: 360 NFQNTIDSGLDILNEYIKDLRDKNKDTLDGKEAFKLYDTYGFPLDLTKEILTENNLK-VD 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F++ +E QR+ AR + + I +++ T+F+GYD L Sbjct: 419 TKEFDKQMENQRNLARNARKSDAGWSLDSINI---DEFDKTEFVGYDDLE---------- 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V + + + E V G K V+ D+T FYAE GGQ+ DTG Sbjct: 466 -------------VKANIIGLFDDKEKVSFIKEGNKGIVISDKTSFYAEGGGQVADTGLV 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 I D + ++ +VQKK E I +H+ V G L + + +D + R ++ NH+ATHLL Sbjct: 513 ITDSAKAKVYNVQKKNE-IIIHYVEVIDGDLNLAKADFI-VDKERRLDITRNHTATHLLD 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL IL V Q GS + + LRFD T+ ++ E++ IE+ +N+ I Q L V IM Sbjct: 571 QALRNILNEDVKQAGSLVDEEKLRFDFTYPNALSDDEIRKIENEINEKIRQQLKVKKEIM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 +++ GA L KY D VRVVS++ +S LCGG HV+++ E+++ I+ ES Sbjct: 631 PYKESEKLGAIGLFEDKYKDMVRVVSID-----DYSIELCGGCHVNNSSEVLMFKILQES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S +GIRRIEAITG++ +L + ++ LK + N++ + E + EE + L+L Sbjct: 686 SAASGIRRIEAITGRKVYDYLNSNLGLINVVSKVLKTNPKNILSKAESLNEEIKNLKLDI 745 Query: 775 AKRKLQLNVEDLSC---HKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K K + N +D+ +++ D N + H D L++ + +++K + I++ Sbjct: 746 QKLK-EFNEKDVYKDIENEVQDANGIKLLVHKFENEDLDTLRNFEERIKEKYKDLIVVFA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K V++ L +R+NA + + +K+ GG GGG+ + AQ+GG + +K D+A Sbjct: 805 TVNND-KIVFTASVSDSLTNRYNAGKIVKEVSKIT-GGNGGGKKNFAQAGGKDISKLDEA 862 Query: 889 I 889 + Sbjct: 863 L 863 >gi|288904885|ref|YP_003430107.1| alanyl-tRNA synthetase [Streptococcus gallolyticus UCN34] gi|288731611|emb|CBI13166.1| alanyl-tRNA synthetase [Streptococcus gallolyticus UCN34] Length = 872 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 343/916 (37%), Positives = 508/916 (55%), Gaps = 74/916 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT FD + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178 Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 L E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + IE+ ++ Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFIEKIVK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G +LD +L+ L GKD + D+ FKLYDT+G P+++ +++ +G Sbjct: 358 REEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F A++EQ+ RARA+ + GS G + S+ E+ S F Sbjct: 417 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLSSITEE--------------SVF 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 ED +VL S + I+ E E GQ + +VF +TPFYAE GGQ+ Sbjct: 462 SYED-EVL------------DSTLSVIIADNERTEAVSEGQAL-LVFAKTPFYAEMGGQV 507 Query: 529 GDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G D I ++TDVQK G +H V L + L ID + R ++ N Sbjct: 508 ADHGVIKNDKGDIVARVTDVQKAPNGQALHTVDVLSS-LSVGTTYTLEIDSKRRHRVIKN 566 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 567 HTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNA 626 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +PV T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T EI Sbjct: 627 IPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIG 681 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765 + IV E I +G RRI A+T + A ++E LK++A+ LKV Q V +V + E Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQE 741 Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820 + KLQ +A+ K + + + N + +I S+V D+ L++ D ++K Sbjct: 742 QLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQKD 801 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++L EK ++ ++D+ +A +L + A ++ G GGG+P MA +GG Sbjct: 802 YSDVLVLAAAIGEKVNVLVASKSKDV----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 856 Query: 881 NGNKADQAIAGVASFL 896 + K +A VA L Sbjct: 857 DAAKIADLLAAVAENL 872 >gi|88809533|ref|ZP_01125041.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7805] gi|88786752|gb|EAR17911.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7805] Length = 894 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 354/918 (38%), Positives = 518/918 (56%), Gaps = 72/918 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH +PS+SL+P DPT++ T +GM+PFK IF GQ++ TT Sbjct: 18 AEIREAFLSFFEQRGHRRMPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQERPAPCATTS 76 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD + Sbjct: 77 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPKN 132 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECI 183 L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + E Sbjct: 133 LVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEEDNFWASGPTGPCGPCSEIYYDFKPELG 192 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G+ E+ +R+IE +NLVFMQ + + L +IDTGMGLERMA +LQ+ NN Sbjct: 193 DEGI--DLEDDDRFIEFYNLVFMQSNRDAQGVLTPLANRNIDTGMGLERMAQILQKVPNN 250 Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL LIQA+ G+ Y + + +VI DH R+ + LI+DG+ +N GRGY+ Sbjct: 251 YETDLIFPLIQAAADRAGVDYYQLDEKGKTSLKVIGDHSRAVTQLISDGVTASNLGRGYI 310 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RR + + RLLG +P + + A M SA+P+LI+ + +I L+ E+ RF + Sbjct: 311 LRRLLRRVVRHGRLLGIDKPFLQAMGEASIALMQSAHPQLIERREVILAELQREEARFLE 370 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG LL VL+ K + ++G+ AF+LYDT+G PL++ Q+I GLA +D+ F Sbjct: 371 TLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTQEIAEEHGLA-VDLAGFET 427 Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 A+E+QR RA+A ++ + +++ L++ T+F GY+ L Sbjct: 428 AMEQQRQRAKAAAVSIDLTLQDAIDQVAAGLQD----TEFRGYEQLE------------- 470 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-- 535 SS ++A+V GE + A +G V+VV D TPFY E GGQ+GD G + Sbjct: 471 ----------QSSSIQALVVNGEPAQSASAGDAVQVVLDVTPFYGEGGGQIGDCGTLVAD 520 Query: 536 ---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 GDG+ + + V + +FVH VERG L + +D RR+ NH+ATHL Sbjct: 521 GQAGDGLIVMVESVSRN-RSVFVHSGRVERGALSVGDVVHGRVDRACRRRAQANHTATHL 579 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++ + Q GS ++ D LRFD + +T+ EL IE +N IA + + Sbjct: 580 LQAALKQVVDPGIGQAGSLVSFDRLRFDFHCPRAVTTEELGRIESLINGWIADAHALEVQ 639 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E A A+GA A+ G KY D VRVV V S LCGGTHV +T EI L IVS Sbjct: 640 EMAIEQAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVRNTAEIGLFKIVS 694 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---K 769 ES + AGIRRIEA+ G +L +D +K L K G ++ RV + +E + K Sbjct: 695 ESGVAAGIRRIEAVAGAAVLPYLNERDAVVKQLGERFKAQPGEIIERVSALQDELKATGK 754 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSVMDALQKKI-QSGIIM 826 L+ +A NF + + VD L+ +L ++ G ++ Sbjct: 755 ALAAAQAELAVAKSAALAAQAVAVGNFQLLVERLDGVDGSGLQGAAQSLVDQLGDGGAVV 814 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSA-KVLGG------GGGGGRPHMAQSGG 879 + G+ +I+V D V A+L A K +GG GGGGGRP++AQ+GG Sbjct: 815 IGGLPDPADQGKVILVAAFGKD----VIAAKLQAGKFIGGIAKLCGGGGGGRPNLAQAGG 870 Query: 880 PNGNKADQAIAGVASFLK 897 +G D A+ + L+ Sbjct: 871 RDGASLDAALTAARAELE 888 >gi|307706847|ref|ZP_07643649.1| alanyl-tRNA synthetase [Streptococcus mitis SK321] gi|307617720|gb|EFN96885.1| alanyl-tRNA synthetase [Streptococcus mitis SK321] Length = 872 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 345/925 (37%), Positives = 505/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +TP Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVDV-LAPLALNQEYTLAIDT 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDEVAGKL 872 >gi|303258979|ref|ZP_07344958.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293] gi|303261663|ref|ZP_07347610.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292] gi|303264332|ref|ZP_07350252.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS397] gi|303265869|ref|ZP_07351766.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS457] gi|303268202|ref|ZP_07354001.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS458] gi|302637243|gb|EFL67731.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS292] gi|302639922|gb|EFL70378.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP-BS293] gi|302642281|gb|EFL72629.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS458] gi|302644604|gb|EFL74854.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS457] gi|302646144|gb|EFL76371.1| alanyl-tRNA synthetase [Streptococcus pneumoniae BS397] Length = 872 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 346/925 (37%), Positives = 507/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREIEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +TP Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|306829747|ref|ZP_07462936.1| alanine--tRNA ligase [Streptococcus mitis ATCC 6249] gi|304428098|gb|EFM31189.1| alanine--tRNA ligase [Streptococcus mitis ATCC 6249] Length = 872 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 348/926 (37%), Positives = 503/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y ED++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPEDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G + +++ L G++ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + + +TDVQK G +H V L L ID Sbjct: 498 PFYAEMGGQVADHGQILDAKGNVVANVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++AS LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVASTLKAPQLKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K + +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDASALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV K ++ T+D+ +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDVLVLVAAIGYKVNVLVASKTKDV----HAGNLVKELAPIV-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|169833050|ref|YP_001694818.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6] gi|205830228|sp|B1ICI3|SYA_STRPI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|168995552|gb|ACA36164.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Hungary19A-6] Length = 872 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 345/925 (37%), Positives = 508/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I + A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNHNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +TP Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQPKIQELLDAVAGKL 872 >gi|126663290|ref|ZP_01734288.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Flavobacteria bacterium BAL38] gi|126624948|gb|EAZ95638.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Flavobacteria bacterium BAL38] Length = 878 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 343/923 (37%), Positives = 499/923 (54%), Gaps = 82/923 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ NGH ++PS+ ++ +DPTLMF NSGM FK F G P + QK Sbjct: 6 IRKQFLQFFESNGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGNPKSPRIADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL++VG HHT FEMLGN+SFG YFK+ AI AW LLT+ + + + LY Sbjct: 66 CLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAINWAWQLLTEVYKIPKENLY 125 Query: 127 ITVY----DE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++V+ DE D+EA+ +WK++ +S D+II DNFW M + GPCGPCSEI D Sbjct: 126 VSVFEGNPDENVPFDQEAWDIWKEL--ISEDRIILGNKKDNFWEMGDQGPCGPCSEIHVD 183 Query: 179 -QGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + E + G S + + +EIWN VFM+F ++ LP +DTGMG ER+ Sbjct: 184 LRTEAEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSS 283 LQ KT+NYD D+F LI+ EQ+TG+KY N + N RVIVDH+R+ + Sbjct: 244 MALQGKTSNYDTDVFTPLIEKVEQITGLKYTSNEVKNISEEQNKTNIAIRVIVDHVRAVA 303 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 F IADG LP+N G GYV+RRI+RRA+ Y LG EP + L+ L +MG +PE+ Sbjct: 304 FAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLGTKEPFINKLVEVLANQMGEFFPEIKS 363 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 + L+ +R E+ F +TL++GL LL+ V++ E+ +G AF+LYDT G P+D+ Sbjct: 364 QQQLVTNVIREEEASFLRTLEQGLQLLENVMAETSGKEV-SGAKAFELYDTFGFPIDLTA 422 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL +G +D FN A++EQ++R+RA S + + W L T F+GYD Sbjct: 423 LILREKGY-DLDEAGFNVAMQEQKARSRA-----ASEVSTEDWNVLIPGNVET-FVGYDQ 475 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + RKV +K G ++V D TPFY Sbjct: 476 TANEVKITRIRKVDSKK---------------------------DGVLYQIVLDNTPFYP 508 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ+GD G + + I D KK + +H A ++ E V ++ R Sbjct: 509 EGGGQVGDKGTLVSANETIDIIDT-KKENNLILHFA--KQLPENIEAGFVAKVNTDLRTS 565 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 S NHSATHL+H AL TILG+HV Q GS + P+ LRFD +H ++ EL+ +E +VN Sbjct: 566 TSKNHSATHLMHLALRTILGTHVEQKGSLVNPNYLRFDFSHFSKVSDDELRQVEASVNAQ 625 Query: 643 IAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L +V R + ++A+ GA AL G KY D VR+ +E+ D S LCGG HV + Sbjct: 626 IEAQLQLVEHRNIPIKEALDKGAMALFGEKYGDNVRM--IEFGD----SKELCGGIHVKN 679 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T EI I+SE ++ AGIRRIEAITG + Q+ L + LK Q +V+ V Sbjct: 680 TAEIWHFKIISEGAVAAGIRRIEAITGDAVKDFYTSQENTLAEIKEVLKNPQ-DVLKSVA 738 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD---VNFMSHIISEVD--SKELKSVMDAL 816 + ++ KL+ ++ ++ +E L +AD VN + + +VD K + A+ Sbjct: 739 SLQDDNAKLKK-QVEQLVKEKIEGLKNSLVADFQEVNGIHFLAKQVDLSMSSTKDLAQAI 797 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874 + + L I ++ ++ ++++L+ NA ++ R K++ G GGG+P Sbjct: 798 GTSKPNAFVFLASI-EDNAPNIHCYISKELVAEKGLNAGNVIRELGKLI-DGNGGGQPFF 855 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 A G N +A+ V F+K Sbjct: 856 ASGKGKNVGGIKEALEKVVDFVK 878 >gi|293365697|ref|ZP_06612406.1| alanine--tRNA ligase [Streptococcus oralis ATCC 35037] gi|307703642|ref|ZP_07640584.1| alanyl-tRNA synthetase [Streptococcus oralis ATCC 35037] gi|291316065|gb|EFE56509.1| alanine--tRNA ligase [Streptococcus oralis ATCC 35037] gi|307623049|gb|EFO02044.1| alanyl-tRNA synthetase [Streptococcus oralis ATCC 35037] Length = 872 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 349/926 (37%), Positives = 501/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y ED++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPEDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G + ++S L G+ I DV FKLYDT+G P+++ + Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVSDLKAKGQSVIAGSDV-FKLYDTYGFPVELTAE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + + +TDVQK G +H V L L ID Sbjct: 498 PFYAEMGGQVADHGQILDAKGNVVANVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++AS LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVASTLKAPQLKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K + +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIASQVSVSDASALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV K ++ T+D+ +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDVLVLVAAIGYKVNVLVASKTKDV----HAGNLVKELAPIV-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|160942602|ref|ZP_02089847.1| hypothetical protein FAEPRAM212_00076 [Faecalibacterium prausnitzii M21/2] gi|158446081|gb|EDP23084.1| hypothetical protein FAEPRAM212_00076 [Faecalibacterium prausnitzii M21/2] gi|295103506|emb|CBL01050.1| alanyl-tRNA synthetase [Faecalibacterium prausnitzii SL3/3] Length = 886 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 349/922 (37%), Positives = 515/922 (55%), Gaps = 67/922 (7%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R +L FF+ GH L S L+P NDP+L+ NSGM P K F QE+P V Sbjct: 4 TGLNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119 TT QKC+R D++ VG T RH TFFEMLGNFSF YFK+ I AW+ LT + Sbjct: 64 TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKDEVIPWAWEFLTSDEWMA 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + + RL+I+VY+ED+EA+ +W K G++ D ++R+ DNFW +GPCGPCSEI+FD+ Sbjct: 120 IPKDRLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDR 178 Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G G P G + +RY+EIWNLVF QF+ K L + +IDTGMGLER+A V+ Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N +++D + ++ E + G Y+ + ++ RVI DH+RS +F+++DGILP+NE Sbjct: 239 QNVGNLFEVDTVQSVLHHVEHIAGKTYKQDPKTDISIRVITDHIRSCTFMVSDGILPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + R+LG P ++ L+ + SAYPEL + I++ + +E+ Sbjct: 299 GRGYVLRRLLRRAARHGRMLGIDHPFLVDLVETVIQSSESAYPELREHDAYIKKVIGTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F +T+D G+ +L+ ++ L K ++L+G AFKL DT G PLD+ ++I +GL I Sbjct: 359 ANFARTIDAGMNILNNMIDRLEKAHQKLLSGMDAFKLNDTFGFPLDLTKEIAAEQGLE-I 417 Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLL--RGSKFMK 470 D F+ +++Q+ RARA L SG +E ++ +L+ + T F GYD L +G+ Sbjct: 418 DEDGFHAEMKKQKERARAERLKKNISGWSEDLFGALEAE--PTVFTGYDTLTDKGTVVAL 475 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 D + L D EEA G V VV D+TPFYAE GGQ D Sbjct: 476 SDEETLTDAIATD-------------------EEAKDG--VLVVLDKTPFYAEMGGQAAD 514 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G G L++ DV+K +G +VH ++E GI++ L +D R ++ NH+AT Sbjct: 515 HGVLNGAECSLRVLDVKKTPKGYYVHTCVLESGIVKVGDVLTAQVDKGYRMAIARNHTAT 574 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL +LG HV Q GS FD TH +T EL ++ VND I ++ V Sbjct: 575 HLLQAALREVLGDHVHQAGSYQDASITHFDFTHFSAVTPEELARVQKIVNDKIFDSMNVT 634 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + M E+A GA AL G KY VRVV +E S+ CGGTHV +T +I I Sbjct: 635 VQEMPVEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKI 689 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE--- 766 VSESS+ AGIRRIEA+TG+ Q+ L +A+ LK + + R E + E Sbjct: 690 VSESSVAAGIRRIEAVTGRNLLIRANLQEAMLHDVANTLKANNVAALPARAEAVMAENKA 749 Query: 767 -YRKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 R+L+ + AK L N E+ KIA F L+ + D+++ K Sbjct: 750 MSRELEEMKAKIAASKVDSLFDNAEEADGVKIASAYFTG-----TTGDTLRGMCDSIRDK 804 Query: 820 IQSGII-MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQ 876 + ++ +LVG +++K + + VT + L + + L ++ + GG GGG+P A Sbjct: 805 AVNPVVAVLVGKAEDK---ITMAVTVNKLAQEKGLKAGVLVKELSAIAGGKGGGKPDFAM 861 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 +G + K D+A+A V++ +KK Sbjct: 862 AGLKDETKIDEALASVSAIVKK 883 >gi|72383213|ref|YP_292568.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A] gi|123620600|sp|Q46I13|SYA_PROMT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|72003063|gb|AAZ58865.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL2A] Length = 886 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 344/899 (38%), Positives = 519/899 (57%), Gaps = 59/899 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F+ FF ++ H+ L SSSLIP +DPT++ T +GM+PFK IF G ++ T+ QK Sbjct: 19 IRDAFINFFVQHNHKKLASSSLIP-DDPTVLLTIAGMLPFKPIFLGLKESSTPRATSSQK 77 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L T+ F L+ + + Sbjct: 78 CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSTEVFRLNPQNIV 133 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 I+V+ ED EA ++WK++ G+ A++IIR+ DNFWS TGPCGPCSE++FD + G Sbjct: 134 ISVFKEDLEAEQIWKEVVGVDANRIIRMGAADNFWSSGATGPCGPCSELYFDFKPEL-GS 192 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 E+ R+IE +NLVFMQ+ + K L IDTGMGLERMA +LQ+K+NNY+ Sbjct: 193 DEIDLEDDSRFIEFYNLVFMQYNRDLKGNLEPLANCHIDTGMGLERMAQILQKKSNNYET 252 Query: 247 DLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DL LI A+ + +KYE N N ++I DH R+ + LI DG+ +N GRGY+LRR Sbjct: 253 DLIFPLINAAALLAQIKYETTNKKNKTSLKIIGDHCRAVTHLICDGVSASNLGRGYILRR 312 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 ++RR + + RL+G +P + L M +AYP+L++ K +I L+ E+ RF +TL+ Sbjct: 313 LIRRMIRHGRLVGIIQPFLPQLAEIAIELMKNAYPQLLEKKKIILNELKIEESRFLETLE 372 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 RG LL + SH + ++++G AF+LYDT+G PL++ ++I +G++ +DI F + Sbjct: 373 RGEKLLAEITSH--ECDLISGAQAFELYDTYGFPLELTEEIANEKGIS-VDINGFENEMA 429 Query: 424 EQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +QR RA+ S+ + G+ E+ SL + T+F GY+ L Sbjct: 430 KQRKRAKEASVSIDLTEEGSIER-EISL---FDDTRFEGYEKLE---------------- 469 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 +S V I + E V++AV G V+++ ++TPFYAE+GGQ+GD G + Sbjct: 470 -------TTSTVIGIFKNNESVKQAVQGDLVKIIVNRTPFYAESGGQIGDKGLITSQDLE 522 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + + +V+KK + IF+H IV G+L S+ + + R++ + NH+ATHLL AL Sbjct: 523 VSVENVRKK-KNIFIHSGIVNTGVLEINSSVQMNVTPSFRQRTTSNHTATHLLQSALKLS 581 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 + S VSQ GS ++ LRFD KP+T EL+ +E +N I ++ + + M ++A+ Sbjct: 582 IDSSVSQRGSLVSNHRLRFDFNAPKPLTIKELEDMEARINQWINEDHLIQIKTMPIKEAM 641 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A+GA A+ G KY D VRVV V G+ S LCGGTHV+ T ++ I++E+ I +GI Sbjct: 642 AAGALAMFGEKYGDVVRVVDVP----GI-SMELCGGTHVTRTSQLGTFKIINETGIASGI 696 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIHAKRK 778 RRIEAI G + +D +K L+ KV +V RV + E + +LI K + Sbjct: 697 RRIEAIAGPSVLDYFNERDLVVKELSKSFKVQSYEIVERVSSLQLELKDKTKELIKVKNE 756 Query: 779 LQLNVEDLS---CHKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKEK 834 L L + + + VD L+S +L + + ++ GI ++ Sbjct: 757 LALAKALGLATYAKSVGKSKLLIRRLDGVDGSGLQSAASSLIDHLGKYSAVIFGGIPNQE 816 Query: 835 KASVLIVV---TEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + L+ V + DL+ D +A AK + GGGGGGRP++AQ+GG D A+ Sbjct: 817 IDNKLVFVAAFSPDLVSDGLHAGKFISGVAK-MCGGGGGGRPNLAQAGGSQPQSLDLAL 874 >gi|313157475|gb|EFR56894.1| alanine--tRNA ligase [Alistipes sp. HGB5] Length = 873 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 308/787 (39%), Positives = 441/787 (56%), Gaps = 72/787 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH ++PS+ ++ DPTLMFTN+GM FK+IF G Y Sbjct: 4 NKIRRAFLDFFESKGHVIVPSAPMVVKGDPTLMFTNAGMNQFKDIFLGNAPRKYPRAADT 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG HHT FEMLGN+S+G YFK+ AI+ AW+LL + L R Sbjct: 64 QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSYGDYFKKEAIEWAWELLGGVYKLPADR 123 Query: 125 LYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 +Y TV++ D+EA+ WK+ L D IIR +DNFW M ETGPCGPCSEI Sbjct: 124 MYATVFEGSEEDGVPFDQEAYDYWKQF--LPEDHIIRGNKHDNFWEMGETGPCGPCSEIH 181 Query: 177 FD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 FD + E PG + + IEIWNLVFMQF ++ LP ++DTGMG ER Sbjct: 182 FDLRDEAEIAAKPGREMVNAGHPQVIEIWNLVFMQFNRKANGSLEPLPARNVDTGMGFER 241 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 + +LQ K +NYD D+F+ IQ Q++G Y + V RVI DHLR+ +F IADG Sbjct: 242 LCMILQGKKSNYDTDVFQPTIQRISQLSGKAYGADAKCDVAMRVIADHLRAIAFSIADGQ 301 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+N GYV+RRI+RRA+ Y LG+TEP + L+P L +MG +PEL + LIE+ Sbjct: 302 LPSNVKAGYVIRRILRRAVRYGYTYLGFTEPTICKLVPGLVEQMGEQFPELKAQQSLIEK 361 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407 + E+ F +TL G+ LLDGV+ + E+++G AF+LYDT G P+D+ + I Sbjct: 362 VIEEEEASFLRTLATGINLLDGVIEKTKGEGRELISGKDAFELYDTFGFPIDLTELIARE 421 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW---FSLKEKYGATQFIGYDLLR 464 +G+ G+D+ +F L+ Q+ R+R + W F ++E + F GYD L Sbjct: 422 QGV-GVDLAAFETELQAQKERSRN-----AAAVDTDDWVELFPIRE----SLFTGYDTLT 471 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + R+V + G +S ++VFD+TPFY + Sbjct: 472 EQVRIARYRRV--------TSKGKTS--------------------YQLVFDRTPFYGNS 503 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G R+ + +K+ G+ +H IV+ +D R+ + Sbjct: 504 GGQIGDIGYIENADERIAVVATEKE-NGLIIH--IVKELPENPAAGFTAVVDAAKRQSAA 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHL+H AL +LG HV Q GS +TP+ LRFD +H + +T EL+ +E VN + Sbjct: 561 NNHTATHLMHEALRKVLGQHVEQKGSMVTPEVLRFDFSHFQKMTPQELREVEMLVNRAVR 620 Query: 645 QNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N P+ R +E+A GA L G KY D+VR+V S LCGGTH S+TG Sbjct: 621 ANYPLEENREATKEEAEKCGAMMLFGEKYGDKVRMVRFG------SSVELCGGTHTSATG 674 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I I++ES+I AG+RRIEA+TG+RA + ++ ++ ++ +L Q V+ V+++ Sbjct: 675 NIGFFKILNESAISAGVRRIEAVTGERAEQIIYAAEDTMRDISDYLHNPQ--VLQAVKKM 732 Query: 764 WEEYRKL 770 +E L Sbjct: 733 FESNEAL 739 >gi|149019336|ref|ZP_01834698.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72] gi|225854830|ref|YP_002736342.1| alanyl-tRNA synthetase [Streptococcus pneumoniae JJA] gi|147931206|gb|EDK82185.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP23-BS72] gi|225722331|gb|ACO18184.1| alanyl-tRNA synthetase [Streptococcus pneumoniae JJA] Length = 872 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 348/926 (37%), Positives = 508/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PCITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K + +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|157150203|ref|YP_001450848.1| alanyl-tRNA synthetase [Streptococcus gordonii str. Challis substr. CH1] gi|205830220|sp|A8AYI8|SYA_STRGC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|157074997|gb|ABV09680.1| alanyl-tRNA synthetase [Streptococcus gordonii str. Challis substr. CH1] Length = 872 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 349/927 (37%), Positives = 510/927 (55%), Gaps = 86/927 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++R A + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRGASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G + +++ L G++ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEVAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + + E+ EAVS ++F +T Sbjct: 469 -----------------------------PSKLVAIVAENAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 PFYAE GGQ+ D G A G+ + +TDVQK G +H V L L I Sbjct: 498 PFYAEMGGQVADHGQILDATGN-LVATVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAI 555 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R ++ NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++I Sbjct: 556 DTNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAI 615 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCG Sbjct: 616 EQQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCG 670 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-G 754 GTHV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 671 GTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLK 730 Query: 755 NVVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKEL 809 V +VE + E+ R+LQ +A K K + +VN +I+S+V D+ L Sbjct: 731 EVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEVNGHRYIVSQVSVSDAGAL 790 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 ++ D ++K S +++LV +K +++ T+D+ +A +L + A ++ G GG Sbjct: 791 RTFADNWKQKDYSDVLVLVAAIGDKVNALVASKTKDI----HAGNLVKELAPIV-DGRGG 845 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 G+P MA +GG N K + + VA L Sbjct: 846 GKPDMAMAGGSNQAKIQELLEAVAGKL 872 >gi|262283148|ref|ZP_06060915.1| alanyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA] gi|262261400|gb|EEY80099.1| alanyl-tRNA synthetase [Streptococcus sp. 2_1_36FAA] Length = 872 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 346/927 (37%), Positives = 504/927 (54%), Gaps = 86/927 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP Sbjct: 1 MKQMSSAQIRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQNKQERFI---LPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF R LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRIEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 PFYAE GGQ+ D G A G+ + +TDVQK G +H V L L I Sbjct: 498 PFYAEMGGQVADHGQILDATGN-VVATVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAI 555 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++I Sbjct: 556 DTNRRHCVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAI 615 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCG Sbjct: 616 EQQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCG 670 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-G 754 GTHV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 671 GTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLK 730 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKEL 809 V +VE + E+ R+LQ +A+ K + K+ +++ +S D+ L Sbjct: 731 EVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKKVKGHRYIASQVSVSDAGAL 790 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 ++ D ++K S +++LV +K ++ +D+ +A +L + A ++ G GG Sbjct: 791 RTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKAKDI----HAGNLVKELAPIV-DGRGG 845 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 G+P MA +GG N K + + VA L Sbjct: 846 GKPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|328881150|emb|CCA54389.1| Alanyl-tRNA synthetase [Streptomyces venezuelae ATCC 10712] Length = 889 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 346/921 (37%), Positives = 515/921 (55%), Gaps = 76/921 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP + ++V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPFSRASSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT + Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTTPVEHGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ +L+ITVY ED+EA ++W+ + G+ A++I R+ DN+WSM GPCGPCSEI +D+ Sbjct: 119 LEPEKLWITVYQEDDEAEQIWRDVVGVPAERIQRLGKKDNYWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233 G G G + ERY+EIWNLVFMQ+E + + ++ F LP +IDTG+GLER+ Sbjct: 179 GPEF-GVEGGPAVNDERYVEIWNLVFMQYERGEGSGKDDFPILGELPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ D + +I + +TG+ Y ++ V+ RV+ DH+R+S LI DG+ Sbjct: 238 AMILQGVQNMYETDTLQVVIDKATALTGVAYGKAHDSDVSLRVVADHMRTSVMLIGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRIMRRA+ RLLG + P++ L+ + MG YPELI + IE Sbjct: 298 PGNEGRGYVLRRIMRRAVRNMRLLGASGPVVGELVDTVINTMGEQYPELITDRKRIETVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F K L G +LD ++ +L+GD AF L+DT G P+D+ ++ +G Sbjct: 358 LAEEAAFLKALKGGTNILDTAVTETKAAGGTVLSGDKAFLLHDTWGFPIDLTLEMASEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR RA+A + +G + + + + GAT+F GY G Sbjct: 418 LS-VDEDGFRRLMKEQRDRAKADAKAKKTGHADMTSYREIADSNGATEFTGYTNTEG--- 473 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + V+ L NGVSS A G +VEVV D+TPFYAE GGQ+ Sbjct: 474 ---ESTVVGL-----LVNGVSSPA------------ASEGDEVEVVLDRTPFYAEGGGQI 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + G +++ DVQ+ G+ VH V+ G + + TID + RR ++ H Sbjct: 514 ADQGRIKLHSGAVIEVRDVQQPVPGVSVHKGSVQVGEVTVGATAYATIDVRRRRAIARAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + A L +E +N+++++ L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENQPGRFRFDFGSPNAVPGAVLTDVEQKINEVLSREL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M ++A GA A G KY ++VRVV++ G S LCGGTHV +T ++ L Sbjct: 634 EVHAEVMPIDEAKRQGAIAEFGEKYGEKVRVVTI-----GDFSKELCGGTHVHNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RRIEA+ G A + L + + L +K GR EE+ E+ Sbjct: 689 VKLLGESSIGSGVRRIEALVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEKI 741 Query: 768 -----------RKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISE-VDSKELKSVMD 814 ++++ A++ LQ + S I V ++ + + + +L+ ++ Sbjct: 742 SAMLGKLKDAEKEIEKFRAEKVLQAAAGLVDSAQDIRGVALVTGQVPDGTGADDLRKLVL 801 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGR 871 ++ +I G +V + L V+ + R A +L R +AK L GGGGGG+ Sbjct: 802 DVRGRISGGRPAVVALFTTANGKPLTVIATNEAARERGLKAGELVRTAAKTL-GGGGGGK 860 Query: 872 PHMAQSGGPNGNKADQAIAGV 892 P +AQ GG N +AIA V Sbjct: 861 PDVAQGGGQNPEAVGEAIAAV 881 >gi|261880084|ref|ZP_06006511.1| alanine-tRNA ligase [Prevotella bergensis DSM 17361] gi|270333239|gb|EFA44025.1| alanine-tRNA ligase [Prevotella bergensis DSM 17361] Length = 886 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 338/940 (35%), Positives = 492/940 (52%), Gaps = 102/940 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++ +FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L L Sbjct: 61 RTNSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEFLVDVLHL 120 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D LY+TV++ D+EA K W K L D II +DNFW M +TGPCGPC Sbjct: 121 DPADLYVTVFEGSPEENIPRDDEAAKYWSK--HLPEDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + + G + + + IEIWN+VFMQF +++ L IDTGM Sbjct: 179 SEIHIDSRPAEEKAKKPGRELVNMDDPQVIEIWNIVFMQFNRKSDGSLEPLAMNVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNIVNH-------R 273 G ER+ +LQ K +NYD D+F+ +I+ E +G KY +G N R Sbjct: 239 GFERLVRMLQGKNSNYDTDIFQPIIKEIEIHSGKKYGFTTPSGKDGKAADNQEKIDIAMR 298 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332 VI DHLR+ +F IADG LP N GYV+RRI+RRA+ YA L M LLP L E Sbjct: 299 VIADHLRTVAFSIADGQLPGNAKAGYVIRRILRRAVRYAYTFLDQRHAFMFKLLPVLIQE 358 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFK 389 MG YPEL + LI ++ E++ F +TL++G+ LL+G + L GK + L+G AF+ Sbjct: 359 MGGTYPELPAQQELISRVMKEEEDSFLRTLEKGIQLLNGDMEELREQGKTQ-LDGTKAFR 417 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 L+DT+G PLD+ + I GL+ +D FN + +Q+ RAR + W LK Sbjct: 418 LFDTYGFPLDLTELICRENGLS-VDEQGFNAQMTKQKERARN-----AAAVENSDWVVLK 471 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 E G +F+GYD + RKV +K Sbjct: 472 E--GEQEFVGYDYTEYECNITRYRKVTQKKKSF--------------------------- 502 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT-- 567 EV+ D TPFY E GGQ+GD G + + + + D K+ VH I+RT Sbjct: 503 -YEVMLDHTPFYGEMGGQVGDQGVLVNEAETIDVIDT-KRENNQSVH-------IIRTLP 553 Query: 568 ---EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624 + +D R + NH+ATHLL +AL +LG HV Q GS ++ D LRFD H Sbjct: 554 KDPNAGFMACVDTDKRTASAANHTATHLLDYALKKVLGDHVEQKGSYVSADTLRFDFAHF 613 Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEY 683 + +T EL+ +E VN ++ ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 614 QKVTDEELREVERLVNRLVREDHPMDEHRDTPVEEAKKMGAVALFGEKYGDKVRVVRFG- 672 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLK 743 S CGG H STG I + I+SESS+ AG+RRIEA+TGQ+ + ++ ++ Sbjct: 673 -----PSCEFCGGIHAKSTGCIGMFKILSESSVAAGVRRIEAMTGQKCEEAMYTLEDTVR 727 Query: 744 SLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSH 799 + S+ ++ +E+ EE Q+ + D + +A+ VN M+ Sbjct: 728 YIKGVFNNSK-DLKSTIEKFIEE--NAQMKKEMESFRSQAVDRTAKTLAERVQTVNGMNV 784 Query: 800 I--ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDL 855 + + V K ++ +++ I + +I ++G K + ++++ED++ NA + Sbjct: 785 VKAVIPVQPASAKDIVFKIRELIPANLICVIGSVYNDKPMLSVMLSEDMVKEHNLNAGQM 844 Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 R +AK++ GGGGG+PH AQ+GG N + A+ V Sbjct: 845 VREAAKLI-QGGGGGQPHYAQAGGKNKDGLSVAVDKVVEL 883 >gi|168487382|ref|ZP_02711890.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00] gi|183569764|gb|EDT90292.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1087-00] Length = 872 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 348/926 (37%), Positives = 508/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K + +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|225860836|ref|YP_002742345.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14] gi|225727156|gb|ACO23007.1| alanyl-tRNA synthetase [Streptococcus pneumoniae Taiwan19F-14] gi|327389569|gb|EGE87914.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA04375] Length = 872 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 345/925 (37%), Positives = 507/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVTQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGNIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I + A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNHNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +TP Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTTSLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|255039401|ref|YP_003090022.1| alanyl-tRNA synthetase [Dyadobacter fermentans DSM 18053] gi|254952157|gb|ACT96857.1| alanyl-tRNA synthetase [Dyadobacter fermentans DSM 18053] Length = 886 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 339/930 (36%), Positives = 501/930 (53%), Gaps = 103/930 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ H ++PS+ L+ NDPTLMF NSGM FK+ F G P + + QK Sbjct: 6 IRQAFLDFFRSKEHLIVPSAPLVAKNDPTLMFNNSGMAQFKDFFLGNGTPPSRRIADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL++VG HHT FEMLGN+SFG YFK+ AI AW+LLT + L + RLY Sbjct: 66 CLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTDVYKLPKDRLY 125 Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++V++ D+EA+ LWK I G ++II DNFW M +TGPCGPCSEI D Sbjct: 126 VSVFEGNEADGVPFDQEAWDLWKGIVG--EERIILGNKKDNFWEMGDTGPCGPCSEIHID 183 Query: 179 -QGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + + G S + + +EIWNLVFMQFE++ LP +DTGMG ER+ Sbjct: 184 LRSPAEVAEVSGKSLVNNDHPQVVEIWNLVFMQFERKADGSLIPLPSTHVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----IVNHRVIVDHLRSSSFLIADGI 290 +Q+KT+NYD D+F++ I E ++G KY N+ + RVI DH+R+ SF I DG Sbjct: 244 MAIQQKTSNYDTDVFQNTINVLETLSGKKYGQNDEPFADIAMRVISDHIRAVSFAITDGQ 303 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+N GYV+RRI+RRA+ Y LG+ EP L+P L + + EL + + Sbjct: 304 LPSNVKAGYVIRRILRRAVRYGYSYLGFQEPFFHKLVPVLAEQFKDVFTELKDQEEFVTR 363 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN---GDVAFKLYDTHGLPLDIMQDILC 406 + E++ F +TL+ GL LD ++ L K+ LN GD F+L DT G P+D+ I Sbjct: 364 VILEEEKSFLRTLESGLKRLDSIIGGL-KETGLNTIPGDEVFELSDTFGFPVDLTALIAR 422 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 + ID + AL EQ+ R+R + + W L+E G +F+GYD Sbjct: 423 EKNFR-IDEAGYQDALAEQKKRSRQDAAKEATD-----WIELRESDG-VEFLGYDFEETH 475 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + RKV + +G++ +V D+TPFYAE GG Sbjct: 476 SHIVKYRKVKTK----------------------------AGEEYHIVLDRTPFYAEMGG 507 Query: 527 QLGDTGCAI------GDGIR-LQITDVQKKAEGIFVH--------HAIVERGILRTEMSL 571 Q+GDTG + DG R + I D KK +FVH A+ GI+ + Sbjct: 508 QVGDTGALLLNSGSKEDGARSISIVDT-KKENDLFVHISRDKNLDEALSGAGIVTAQ--- 563 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 I+ + R ++ NH+ATHL+ ++ +LG+HVSQ GS + + LRFD H +T E Sbjct: 564 ---INVERRNKIKSNHTATHLMLSSMREVLGTHVSQKGSYLNDEVLRFDFAHFSKVTDEE 620 Query: 632 LKSIEDNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 L+ IED VN+ I +N+ + R + + A+ +GA A G KY D VR++ + + S Sbjct: 621 LRKIEDRVNEKIRENIALEERRNVPIQQALDAGATATFGEKYGDFVRLIIFDPK----FS 676 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LCGGTHV STGEI + +SE S+ AG+RR+EA+TG++A + Q+E L + LK Sbjct: 677 FELCGGTHVPSTGEIGVFKFISEGSVSAGVRRVEAVTGEKALELMRQQEETLNKIKDLLK 736 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSH-----IISEV 804 +++ VE + EE LQ K+ L E + K V N +H I+ +V Sbjct: 737 -GPTDLIKAVENLIEERSALQ----KKISALENEKIQALKTTLVENMETHSTFNLIVQKV 791 Query: 805 D---SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLS 859 D + LK + L+ ++++ +I + G K + + + E+++ NA + + Sbjct: 792 DVPSADSLKQLSYELRDQVEN-LIAVFGAEIGGKPQLSVFIAENIVAETGLNAGKIVKDL 850 Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 A+ + GGGGG+P A +GG + + D A+ Sbjct: 851 AREI-RGGGGGQPFFATAGGSDASGLDVAL 879 >gi|313115845|ref|ZP_07801279.1| alanyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255] gi|310621843|gb|EFQ05364.1| alanyl-tRNA synthetase [Faecalibacterium cf. prausnitzii KLE1255] Length = 887 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 342/915 (37%), Positives = 509/915 (55%), Gaps = 53/915 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R +L FF+ GH L S L+P NDP+L+ NSGM P K F QE+P V Sbjct: 4 TGLNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119 TT QKC+R D++ VG T RH TFFEMLGNFSF YFKE I AW+ LT + Sbjct: 64 TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTSDEWMA 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + + RL+I+VY+ED+EA+ +W K G++ D ++R+ DNFW +GPCGPCSEI+FD+ Sbjct: 120 IPKDRLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDR 178 Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G G P G + +RY+EIWNLVF QF+ K L + +IDTGMGLER+A V+ Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N +++D + ++ E++ Y + ++ RVI DH+RS +F+++DGILP+NE Sbjct: 239 QGVGNLFEVDTVQSVLHHVERIANKTYGEDDKTDISIRVITDHIRSCTFMVSDGILPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + R+LG T P ++ L+ + SAYPEL + I++ + +E+ Sbjct: 299 GRGYVLRRLLRRAARHGRMLGITRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F +T+D G+ +L+ ++ L K + +L G FKL DT G PLD+ ++I +G+ I Sbjct: 359 ANFARTIDAGMNILNNMIDGLEKAHEHLLKGLDVFKLNDTFGFPLDLTKEIAAEQGIE-I 417 Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F+ + +Q+ RARA L SG +E ++ +L + T F GY+ L + Sbjct: 418 DEEGFHAEMTKQKERARAERLKKNISGWSEDLFGALNAE--PTVFTGYETLNDTGV---- 471 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V+ LT+ +++ EEA G V VV D+TPFYAE GGQ D G Sbjct: 472 --VVALSDEETLTDAIATD-----------EEAKDG--VLVVLDKTPFYAEMGGQAADHG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 L++ DV+K +G +VH ++E GI++ L +D + R ++ NH+ATHL Sbjct: 517 MLNSADCSLRVLDVKKTPKGYYVHTCVLESGIVKVGDHLTAQVDKEYRMAIARNHTATHL 576 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG HV Q GS + FD TH +T EL ++ VND I +++ V R Sbjct: 577 LQAALREVLGDHVHQAGSYQDAEITHFDFTHFSAVTPEELARVQKIVNDKIYESMNVTVR 636 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E+A GA AL G KY VRVV +E S+ CGGTHV +T +I IVS Sbjct: 637 EMPIEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKIVS 691 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG---RVEEIWEEYRK 769 E+S+ AGIRRIEA+TG+ Q+ L ++AS LK + NV R E + E + Sbjct: 692 EASVAAGIRRIEAVTGRNLLIRANLQEAMLHTVASTLKAN--NVTALPVRAEAVMAENKA 749 Query: 770 LQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQ-KKIQSG 823 L + K Q+ ++ +I V S + L+ + D ++ K ++ Sbjct: 750 LAKELEEIKAQVAASKVTSLFDNAEEIGGVKIASAYFTGTTGDTLRGMCDTIRDKAVKPA 809 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 + +LVG E K ++ + VT+ ++ + GG GGG+P A +G + Sbjct: 810 VAVLVG-KAEDKITMAVTVTKQAQEKGLKAGALVKEIAAIAGGKGGGKPDFAMAGLKDET 868 Query: 884 KADQAIAGVASFLKK 898 K D+A+A V++ +KK Sbjct: 869 KIDEALAAVSAIVKK 883 >gi|218281062|ref|ZP_03487629.1| hypothetical protein EUBIFOR_00188 [Eubacterium biforme DSM 3989] gi|218217684|gb|EEC91222.1| hypothetical protein EUBIFOR_00188 [Eubacterium biforme DSM 3989] Length = 876 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 333/911 (36%), Positives = 496/911 (54%), Gaps = 61/911 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL++F+ GH + P +SLIP NDPTL++ N+G+ K F G EKP + Sbjct: 7 NQIRQMFLDYFKSKGHMIEPGASLIPHNDPTLLWINAGVAALKKYFDGSEKPASNRIANA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVGRT RHHTFFEMLGNFS G YFK+ AIQ AW+ LT E +D+ Sbjct: 67 QKSIRT----NDIENVGRTARHHTFFEMLGNFSIGDYFKDEAIQFAWEFLTSEEWMGIDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY++VY +D A+++W I G+ I++ T+DNFW + + GP GP SEIFFD+GE Sbjct: 123 DRLYVSVYTDDARAYEVWTTICGVDPSHILK--TDDNFWEIGK-GPGGPDSEIFFDRGEK 179 Query: 183 I-PGGLPG----SSEEGERYIEIWNLVFMQFEQQ---NKQERFILPKMSIDTGMGLERMA 234 P GL E +RY+E+WN+VF Q++ ++++ LP+ +IDTGMGLER+ Sbjct: 180 YDPEGLGEKLFFDEMENDRYVEVWNVVFSQYDCDPSIDRKDYKELPQKNIDTGMGLERLV 239 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q+ N+D DLF +I+A+E + YEG + +RVI DH+R+ +F ++DG +N Sbjct: 240 ALVQDGETNFDTDLFLPIIRATEAMAKHPYEGEYKMAYRVIADHVRTVTFALSDGANFSN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GRGYVLRR++RRA+ Y LG EP + L+P + M YP L + ++ ++ E Sbjct: 300 SGRGYVLRRVLRRAVRYGLKLGLDEPFLYKLVPVVADLMEDFYPYLQEHVEFNQKLIKVE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +E F KTL G LLD +S KD L+G+V FKLYDT+G P ++ Q+I G+ + Sbjct: 360 EETFKKTLKVGQALLDDEISK-AKDGKLSGEVVFKLYDTYGFPFELTQEIAEESGIT-VS 417 Query: 415 IISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F+ + +Q+ RAR A ++ + + + E ++FIGYD L Sbjct: 418 HEDFDAQMNKQKERARNARNVKDSFASQNEELMNFNE---PSEFIGYDHL---------- 464 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 C I L N +V ++ +G I+ D+T FYAE+GGQ+ D G Sbjct: 465 --TCDGKIIALFNAEGKMVDSLEDEGMII------------LDKTCFYAESGGQVADKGT 510 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 DG+ +++ DVQK +H + G+L MSL ++ ++R + NHS THLL Sbjct: 511 FSADGVDVEVLDVQKTRNKQHIHTVKINGGVLEKGMSLHGEVNVKDRLATTANHSCTHLL 570 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG H+ Q GS P+ LRFD H + +T+ +L +E VN+ I+ PV I Sbjct: 571 QSALVKVLGDHIHQAGSYNCPEYLRFDFNHYEKVTAEQLAEVERIVNEYISAAYPVTKEI 630 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M E+A SGA AL KY D VRVV++ G S C G HV +T +I L I+SE Sbjct: 631 MPIEEAKKSGATALFDEKYGDTVRVVTM-----GDVSKEFCAGCHVENTAQIGLCKIISE 685 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQ 771 SI + RRI A T A + L+++A K +G N+ +VE ++ +Q Sbjct: 686 ESIGSDSRRITAKTKFAAYQDFASEHAMLENIADSAK-QKGIKNIDTKVEAAYKTMHDMQ 744 Query: 772 -----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 L + L+ VN + +S +D+ LK ++ L+ ++ Sbjct: 745 KEIDNLKNQIFTLKSKEWATEAKDFGKVNVLIKSVSGMDAGALKDIVSNLKANDDKMVVF 804 Query: 827 LVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 V + EK V E + +A L + +A++ G GGG+P MAQ+GG + +K D Sbjct: 805 FVNTNGEKVVFVSGAGKEAVKAGVHAGQLVKKAAQIC-SGNGGGKPDMAQAGGKDASKVD 863 Query: 887 QAIAGVASFLK 897 +AI + LK Sbjct: 864 EAINAITEELK 874 >gi|24379123|ref|NP_721078.1| alanyl-tRNA synthetase [Streptococcus mutans UA159] gi|41018215|sp|Q8CWY0|SYA_STRMU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|24377026|gb|AAN58384.1|AE014908_10 putative alanyl-tRNA synthetase (alanine--tRNA ligase) [Streptococcus mutans UA159] Length = 872 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 347/916 (37%), Positives = 513/916 (56%), Gaps = 74/916 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+F++ H + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQVRQMWLDFWKSKDHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FDL + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDDAIKWGFELLTSPEWFDLPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDSYNRWIE-CGVDPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178 Query: 182 ----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 I L E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 FDPDHIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDQDGDNM-SFKVIADHIRSLSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG EP + L+P + M S YPE+++ + IE+ ++ Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKIVK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+E F +T+D G +LD +L+ L + L G F+LYDT+G P+++ +++ G Sbjct: 358 REEETFARTIDAGSNMLDQLLADLKAADKDTLEGKDIFRLYDTYGFPVELTEELAEDAGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F A++EQ+ RARA+ + GS G + ++ EK S F Sbjct: 418 K-IDHQGFQAAMKEQQERARANVVKGGSMGMQNETLSNITEK--------------STFN 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 E K +D SS+ I I EAVS +V +VF +TPFYAE GGQ+ Sbjct: 463 YE-------KEALD-----SSLSVIIADNKRI--EAVSEGQVLLVFSETPFYAEMGGQVA 508 Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G D ++TDVQK G +H V G L + L ID++ R ++ NH Sbjct: 509 DHGLIKNDKGDTVARVTDVQKAPNGQALHTVDV-LGSLSVGTTYHLEIDHERRNRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL ++G+H +Q GS + LRFD TH + +T EL+ IE+ VN I + + Sbjct: 568 TATHLLHAALHNVIGNHATQAGSLNEVEFLRFDFTHFEAVTPEELRQIEEEVNQQIWKAI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + + A GA AL G KY VRVVS+ G +S LCGGTH+ +T EI + Sbjct: 628 PVTTIETDLDTAKEMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHLKNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEE 766 IV E I +G RRI A+T + A +++ LK +A+ LK Q N V +V + ++ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDILKEIATTLKAPQMNQVANKVASLQDQ 742 Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821 KLQ +A K K + +VN + +I S+V D+ L++ D ++K Sbjct: 743 LHKLQKENAELKEKAAAVAAGDIFKDVKEVNGLRYIASQVEVADAGALRTFADKWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++LV S KK +VL+ ++D+ +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLVLVA-SIGKKVNVLVASKSKDI----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 856 Query: 881 NGNKADQAIAGVASFL 896 + + IA VA L Sbjct: 857 DASAIKDLIAAVAENL 872 >gi|225428201|ref|XP_002278951.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297744517|emb|CBI37779.3| unnamed protein product [Vitis vinifera] Length = 1006 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 340/917 (37%), Positives = 513/917 (55%), Gaps = 90/917 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 SIR FL+F+ GH++LPSSSL+P +DPT++ T +GM+ FK IF G+ TT Q Sbjct: 111 SIRHRFLDFYASRGHKVLPSSSLVP-DDPTVLLTIAGMLQFKPIFLGKVPRQVPRATTAQ 169 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 +C+R ND++NVG+T+RHHTFFEMLGNFSFG YFK+ AI+ AW+L T E+ L RL Sbjct: 170 RCIRT----NDVENVGKTSRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEYGLPADRL 225 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 +I+VY++D+EA +W K G+ ++I R+ DNFW+ TGPCGPCSEI++D P Sbjct: 226 WISVYEDDDEALAIWTKEVGVPVERIKRMGAEDNFWTSGVTGPCGPCSEIYYD---FHPE 282 Query: 186 GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 + G+ R+IE +NLVFMQ+ +++ L +M+IDTG+GLERMA +LQ+ NN Sbjct: 283 RGYSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVPNN 342 Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL +I+ + ++ + Y + + +N +VI DHLR+ +LI+DG++P+N GRGYV Sbjct: 343 YETDLIYPIIEKASELANVSYALADDHAKMNLKVIGDHLRAIVYLISDGVVPSNIGRGYV 402 Query: 301 LRRIMRRAMCYARLLGY-------TEPLMMHLLPALCTEMGSAY-PELIQAKLLIEETLR 352 RR++RRA+ RLLG E + + E+ S P++ I E L+ Sbjct: 403 ARRLIRRAVRTGRLLGIKGDGRGNPEGAFLPTIAEKVIELSSQIDPDVKSRAPRILEELK 462 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E+ RF +TL+RG LLD +L++ G IL+G F LYDT+G P++I + Sbjct: 463 REELRFVQTLERGEKLLDEMLANALLNSNENGNGPILSGKDVFLLYDTYGFPVEITTEAA 522 Query: 406 CARGLAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 RG+ GID+ F +E QR +++A +++ L G + L E T+F+GY+ L Sbjct: 523 EERGV-GIDMNGFEIEMENQRRQSQAAHNAVKLAVGNSA----DLTENISDTEFLGYETL 577 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 ++++ ++ G V + G VE+ ++TPFYAE Sbjct: 578 -----------------------STKAVIEGLLVNGNPVIQVSEGSDVEIFLNRTPFYAE 614 Query: 524 AGGQLGDTGCAIGDGIR------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 +GGQ+GD G + R ++I DVQK IFVH ++ G++ + +D Sbjct: 615 SGGQIGDHGFLYVNEDRNQKNAVVEIKDVQKSLGNIFVHKGTIKEGVVEVGKEVEAAVDA 674 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R++ I+H+ATHLL AL ++G SQ GS + D LRFD +P+ EL IE+ Sbjct: 675 NLRQRAKIHHTATHLLQAALKKVIGDETSQAGSLVAFDRLRFDFNFHRPLQEKELVEIEE 734 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 +N I + T++M DA +GA A+ G KY ++VRVV V GV S LCGGT Sbjct: 735 LINGWIGDATLLQTKVMPLADAKRAGAIAMFGEKYGEQVRVVEVP----GV-SMELCGGT 789 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HVS+T EI I+SE I +GIRRIEA+ G ++ +D ++ L S LKV V Sbjct: 790 HVSNTCEIRGFKIISEQGIASGIRRIEAVAGDAFIEYVNARDNHMRQLCSTLKVKAEEVT 849 Query: 758 GRVEEIWEEYR----KLQLIHAKRKL-QLNVEDLSCHKIA---DVNFMSHIISEVDSKEL 809 RVE + EE R ++ + AK + + +V + + + + + ++D+ L Sbjct: 850 TRVEALLEELRMTRNEVSAVRAKAAVYKASVMAGNAFPVGTSKKIRVLVESMDDIDADSL 909 Query: 810 KSVMDALQKKIQSGIIMLVG-ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG---- 864 KS + L +Q +++G E+K S++ T + VDL + K +G Sbjct: 910 KSAAEYLIDTLQDPAAVILGSCPSEEKVSLVAAFTPGV------VDLGIQAGKFIGPIAK 963 Query: 865 --GGGGGGRPHMAQSGG 879 GGGGGGRP+ AQ+GG Sbjct: 964 LCGGGGGGRPNFAQAGG 980 >gi|260061769|ref|YP_003194849.1| alanyl-tRNA synthetase [Robiginitalea biformata HTCC2501] gi|88785901|gb|EAR17070.1| alanyl-tRNA synthetase [Robiginitalea biformata HTCC2501] Length = 871 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 355/918 (38%), Positives = 521/918 (56%), Gaps = 79/918 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+ FL FF+ GH ++PS+ L+ +DPTL+F N+GM PFK F G P Y V QK Sbjct: 6 IRSRFLTFFKDRGHRIVPSAPLVVKDDPTLLFVNAGMNPFKEYFLGVSNPKYPRVADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VGR HHT FEMLGN+SFG YFKE I AW+ LT+ +D+ RLY Sbjct: 66 CLRVSGKHNDLEEVGRDTYHHTLFEMLGNWSFGDYFKEETIGWAWEFLTEVCGIDRDRLY 125 Query: 127 ITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 +T++ + D+EA+ WK I L D+I+ + DNFW M + GPCGPCSEI Sbjct: 126 VTIFEGSSDADALERDQEAYDFWKAI--LPEDRILMGSKKDNFWEMGDQGPCGPCSEIHV 183 Query: 178 D-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 D + E PGS +++ +EIWNLVF+Q+ ++ LP+ IDTGMG ER+ Sbjct: 184 DIRPEEERRKTPGSELVNQDHPEVVEIWNLVFIQYNRKADGSLEPLPEKHIDTGMGFERL 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290 VLQ +NYD DLF LI+ ++TG Y E ++I RVI DH+R+ SF IADG Sbjct: 244 CMVLQGVRSNYDTDLFTPLIREIGKITGKDYGQSEEDDIAI-RVIADHIRAVSFTIADGQ 302 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP N G GYV+RRI+RRA+ Y LG EP M L+ L EMG A+PEL + + L+E Sbjct: 303 LPGNSGAGYVIRRILRRAIRYGFTFLGAREPFMFRLVGTLVAEMGEAFPELAEQRRLVEN 362 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +R E+ F KTL++GL LD V++ + + ++G AF+LYDT G P+D+ IL RG Sbjct: 363 VVREEEVSFLKTLEQGLARLDAVIAET-RGKTVDGGRAFELYDTFGFPIDLTSLILRERG 421 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F+ A++EQ+ R+RA S + + W + A++F+GYD L + Sbjct: 422 YE-LDRQGFDAAMKEQKDRSRA-----ASESAAEDWVKVHPG-PASEFVGYDALEARSRI 474 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ RKV +K +G ++V D TPFY E GGQ+G Sbjct: 475 RKYRKVESKK---------------------------TGTLYQLVLDTTPFYPEGGGQVG 507 Query: 530 DTGCAIGDGIRL-QITDVQKKAEGIF-VHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D+G G G + +I D +K+ I + A+ E + +D + R+Q NH Sbjct: 508 DSGHLEGSGGAVTEILDTRKENNEILHITEALPE----DPGAEFLAVVDAERRKQTRRNH 563 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL +LGSHV Q GS + P LRFD +H + EL+ +ED VN+ IA L Sbjct: 564 TATHLLHQALREVLGSHVEQKGSAVQPGYLRFDFSHFSKLKDEELRRVEDFVNERIADGL 623 Query: 648 PV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V + + + ++A+ +GA AL G KY D VR +V + D S LCGGTH +T EI Sbjct: 624 DVEIKKGVPMQEALEAGAMALFGEKYGDTVR--TVRFGD----SIELCGGTHADNTAEIW 677 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 I+SES++ AG+RRIEAIT R + ++ L+++ + LK +Q + + VE + EE Sbjct: 678 HFKILSESAVAAGVRRIEAITSDAVREYFADKERVLEAIRTRLKNAQ-DPLQAVESLQEE 736 Query: 767 YR--KLQLIHAKRKLQLNVE-DL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 K +L KR+ N++ DL + K V+F++ + ++D+ +K + L +++ Sbjct: 737 NAGLKKELERLKREQAGNLKGDLKSALDKRDGVHFLARQV-DLDASSMKDLAFQLGGEVE 795 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + +L+G ++ KA + + +++ L NA + R K + GGGGG+P A +GG Sbjct: 796 D-LFLLLGSEQDGKALLTLYISKGLAAEKDLNAGAIIRELGKHI-QGGGGGQPFFATAGG 853 Query: 880 PNGNKADQAIAGVASFLK 897 N + +A+ AS+L+ Sbjct: 854 KNPSGIGKALEAAASYLQ 871 >gi|313676999|ref|YP_004054995.1| alanyl-tRNA synthetase [Marivirga tractuosa DSM 4126] gi|312943697|gb|ADR22887.1| alanyl-tRNA synthetase [Marivirga tractuosa DSM 4126] Length = 876 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 326/882 (36%), Positives = 498/882 (56%), Gaps = 71/882 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL FFQ+ H+++PS+ ++ +DPTLMFTN+GM FK+ F G + VT Sbjct: 4 SEIRKKFLNFFQEKEHKIVPSAPMVIKDDPTLMFTNAGMNQFKDYFLGNKVAEATRVTDT 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ +W+LLT F L + R Sbjct: 64 QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWSWELLTDIFKLPKER 123 Query: 125 LYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LY+TV++ D+EA+ WK + +I++ NDNFW M +TGPCGP SEI Sbjct: 124 LYVTVFEGDKADGIPFDQEAYDFWK--GHIDESRILKGDKNDNFWEMGDTGPCGPASEIH 181 Query: 177 FD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 D + E +PG + + +EIWNLVF+QF ++ LP IDTGMG ER Sbjct: 182 VDLRDEADIAKIPGKDLVNNDHPLVVEIWNLVFIQFNRKADGSLHALPAQHIDTGMGFER 241 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLIADGI 290 + +Q K +NYD D+F L+ +++G KY E + I + RVIVDH+R+ S I+DG Sbjct: 242 ICMAIQNKKSNYDTDVFTPLLDELAKISGKKYGELSKIDIAFRVIVDHIRAISLSISDGQ 301 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+N GYV+RRI+RRA+ Y L EP + L+P L + +PEL + L+E+ Sbjct: 302 LPSNNKAGYVIRRILRRAVRYGYTFLDLKEPFLFKLVPILAKQFEEVFPELKAQQELVEK 361 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407 ++ E+ F +TL+ GL L+ + + L + ++G VAF+LYDT+G PLD+ I Sbjct: 362 VIKEEETAFLRTLENGLKRLESIKAELSSSGNATISGAVAFELYDTYGFPLDLTALIAKE 421 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F QA+ EQ++R+++ + + +G W + E +F+GYD ++ Sbjct: 422 NGLT-VDEKGFEQAMNEQKNRSKS-AAKMETGD----WQIVNEGRD-VEFVGYDEVKA-- 472 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 D K+L + + N + +++++V D+TPFYAE+GGQ Sbjct: 473 ----DAKILRYRS---VKNK-------------------NKEQIQLVLDKTPFYAESGGQ 506 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG +++ D KK + VH V++ + + + ID RR++ NH Sbjct: 507 IGDTGILKVSNETIKVLDT-KKENDLIVH--FVDKIPAQLDAKVHAQIDNDRRRKIVYNH 563 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+H AL +LG HV Q GS ++ LRFD +H +T E+ +E VN+ I +N+ Sbjct: 564 SATHLVHAALREVLGDHVQQKGSLVSDKLLRFDFSHFSKMTDEEILKVERRVNEKIRENI 623 Query: 648 PVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 P R + E+A A GA AL G KY D VR+++ + +S LCGG HV +TG I Sbjct: 624 PQQEERNIPIEEAKAKGAMALFGEKYGDTVRMITFDPN----YSVELCGGVHVPATGNIG 679 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 I +E+S+ AGIRRIEA+TG++A + + Q+ LK + + LK S ++ VE++ +E Sbjct: 680 QFKITTETSVAAGIRRIEAVTGEKAEEYHLDQEAILKQVNALLK-SPKDLAQAVEQLMKE 738 Query: 767 YRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821 +LQ L + K ++D N +S IISE+ ++ LK + L+ ++ Sbjct: 739 KNELQKSLEKEQSKQAGALKDELIKNAEKQNDISVIISEIALPNADALKKLSFELKNEVD 798 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAK 861 S + ++ + K + +V++E+L++ NA + R AK Sbjct: 799 S-LFAVLACDVDGKPQISVVISENLVESKDLNAGKIIRDLAK 839 >gi|269795075|ref|YP_003314530.1| alanyl-tRNA synthetase [Sanguibacter keddieii DSM 10542] gi|269097260|gb|ACZ21696.1| alanyl-tRNA synthetase [Sanguibacter keddieii DSM 10542] Length = 895 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 342/921 (37%), Positives = 510/921 (55%), Gaps = 71/921 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L +F+ GH ++PS+SL+ DP+ +FT +GMVPF TGQ+ ++ T+V Sbjct: 4 AEIRQRWLTYFEDRGHTVVPSASLV-SPDPSTLFTIAGMVPFIPYMTGQQTAPWKRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AWD +T D Sbjct: 63 QKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEEAIAYAWDFITGSVDDGKLG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +++TV+ ED+EA ++WK+++GL+ ++I DNFWS GP GPCSEI+ D+ Sbjct: 119 FDPELVWVTVFHEDDEAREIWKRVAGLTDERIQSRGMRDNFWSTGARGPAGPCSEIYIDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM------SIDTGMGLERM 233 G G G + +RYIEIWNLVFMQFE+ + + P + +IDTGMGLER+ Sbjct: 179 GPEY-GAEGGPVVDEDRYIEIWNLVFMQFERADGGTKDDFPILGPLASRNIDTGMGLERV 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290 A +LQ N Y+ID +I+ +++++G Y E ++ V RV+ DH+RS+ LI DGI Sbjct: 238 AFLLQGVDNMYEIDEVFPVIEVAQRLSGKTYGAVEADD-VRMRVVADHIRSAVMLIGDGI 296 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+NEGRGYVLRR++RR++ RLLG EP + L+PA M ++YPEL + I Sbjct: 297 RPSNEGRGYVLRRLIRRSVRAMRLLGVEEPALPALVPASIEVMKASYPELGEGSDRILSI 356 Query: 351 LRSEDERFGKTLDRGLVLLD----GVLSHLGKDE-ILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+E F +TL G +L+ LS G + +L G AF+L+DT+G P+D+ ++ Sbjct: 357 ALAEEEAFRRTLTAGTTILETAVGSALSTSGPGKAVLGGAEAFQLHDTYGFPIDLTLEMA 416 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGA-TQFIGYDLL 463 G+ +D +F ++EQR+RARA +L SG +K + +L+ GA +F+GY Sbjct: 417 SEHGVT-VDETAFRTLMQEQRTRARADALAKRSGGADKAAYEALQTGLGAPVEFLGYTD- 474 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 T S+IV IV G A + VEV+ D+TPFYAE Sbjct: 475 ---------------------TTARSTIVGLIVD-GVPGPVATAPATVEVILDRTPFYAE 512 Query: 524 AGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 AGGQL D G + DG +++ DVQ +G+ VH V G++ S TID R+ Sbjct: 513 AGGQLADQGTIVLDGGGTIEVDDVQAPIKGLSVHRGRVVDGVVTMGESGTATIDTARRKA 572 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 +S HSATH++H AL LG +Q GS P +RFD S+ + + L IE+ VN Sbjct: 573 ISRAHSATHMIHKALQESLGKDATQAGSENAPSRIRFDFRSSQAVPTGALAEIEERVNTQ 632 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 +A++L V ++MN ++A A GA AL G KY DRVRVVS+ GG S LC GTHV + Sbjct: 633 LAEDLEVTEQVMNIDEARALGAMALFGEKYGDRVRVVSI----GGDWSRELCAGTHVKRS 688 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-------GN 755 G++ L+ ++ E+SI +G+RR++A+ G A + + L L V G Sbjct: 689 GQLGLVTLLGEASIGSGVRRVDALVGDGAYGFQAKEHALVGQLTGMLNVRTEELPDRIGG 748 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK-ELKSVMD 814 ++ R++E +E ++ S + D ++H EV S +L+++ Sbjct: 749 LITRLKEAEKELAAVRQGQLLAAAGQLA--ASAEMVGDARVVTHDAGEVASADDLRALAL 806 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGR 871 ++ ++ +V ++ K L+VV + R A + ++ VL GGGGGG+ Sbjct: 807 DVRGRLGESAPTVVAVAGVSKDRPLVVVVTNATARERGLKAGAFVKAASGVL-GGGGGGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGV 892 MAQ GG + A+AG+ Sbjct: 866 DDMAQGGGQDVTAVPAALAGL 886 >gi|237785598|ref|YP_002906303.1| alanyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385] gi|237758510|gb|ACR17760.1| Alanyl-tRNA synthetase [Corynebacterium kroppenstedtii DSM 44385] Length = 886 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 334/915 (36%), Positives = 498/915 (54%), Gaps = 59/915 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F E F K GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++QK Sbjct: 6 IRERFTEHFVKAGHTSVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFNTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 CVR D+D VG T RH+TFF+M GNFSFG YFKE AI AW+LLT D LD Sbjct: 65 CVRT----LDIDEVGITTRHNTFFQMAGNFSFGNYFKEGAITHAWELLTSSVDDGGFGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++T+Y +D+EA +W G+ ++I R+ DN+WSM GPCGP SEI++D+G Sbjct: 121 PDRLWVTIYQDDDEAGDIWHDKIGIPRERIQRLGMADNYWSMGIPGPCGPSSEIYYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMAT 235 G G + RYIEIWNLVFM+ E + +E F LPK +IDTG+G+ER+A Sbjct: 181 EY-GKEGGPVVDDTRYIEIWNLVFMEKERGEGTGKENFEILGPLPKKNIDTGLGIERVAC 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPA 293 +LQ N Y+ DL + +I +E++TG Y + V RVI DH R++ LI DG+ P+ Sbjct: 240 ILQGVDNVYETDLLRPVIDVAEELTGAPYGARHADDVRFRVIADHCRTALMLILDGVAPS 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ I T + Sbjct: 300 NEGRGYILRRLLRRIVRSARLLGATHETMERFMETVRRTMTPSYPEIEDNWERIRSTAVA 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ F TL+ G L + L + + G AF L+DTHG P+D+ ++ +GL Sbjct: 360 EERAFLATLESGEKLFTTIAEDLKARGETVFPGSDAFILHDTHGFPVDLTAEMANEQGLT 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D +F++ +++Q++RA+A + G + AT F GYD L E Sbjct: 420 -LDRDAFDRHMQDQKARAKADNRAKKHGHANLSVYRPFVDNHATVFTGYDTL-------E 471 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 D + +V G++VE+A G V+V+ D+TPFYAE+GGQ+ D Sbjct: 472 DEGTIL----------------GMVSNGQLVEKATEGDHVDVILDRTPFYAESGGQMADH 515 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G RL++ DVQK + ++VH V G + M + +D Q R HS TH Sbjct: 516 GELSTAGARLKVNDVQKIGKKLWVHKTEVTGGEIAVGMKVEGKVDPQWRHAARQAHSGTH 575 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG Q GS P LRFD ++P+T +LK I+D N + + V T Sbjct: 576 LIHAALRQVLGPTAVQAGSMNKPGYLRFDFNFNRPLTDGQLKDIQDIANSAVDADYTVNT 635 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + ++A GA AL G Y D VRVV + GG S LCGGTHV ++ + ++ Sbjct: 636 IETSLDEAKKMGALALFGQSYGDWVRVVEI----GGPFSMELCGGTHVDHASQVGPIAVL 691 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE----IWEEY 767 ESS+ +G RRIEA TG + +L Q L ++A+ LK +V RV++ + + Sbjct: 692 GESSVGSGARRIEAYTGMDSFRYLAQQQSTLTTVATSLKAPADDVPERVDQLAARLHDAE 751 Query: 768 RKLQLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKI--QSG 823 R + H ++ LQ ++ H ++ +V ++ +S+V++K+L+ + ++ ++ + Sbjct: 752 RAVARAH-QQALQSKADEFVAHAQRLNNVTVVAESVSDVEAKDLRPMALDVRNRLGNEPA 810 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +++L+ + +K V+ + + NA L + + + G GGG+P MAQ G + Sbjct: 811 VVVLISSTGDKVPFVVSANEQATGNGINANSLVKTIGQSV-NGRGGGKPDMAQGSGSDAT 869 Query: 884 KADQAIAGVASFLKK 898 A+ V LKK Sbjct: 870 GISHALDAVLDDLKK 884 >gi|325977827|ref|YP_004287543.1| alanyl-tRNA synthetase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177755|emb|CBZ47799.1| alaS [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 872 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 342/916 (37%), Positives = 508/916 (55%), Gaps = 74/916 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT FD + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178 Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 L E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + IE+ ++ Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFIEKIVK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G +LD +L+ L GKD + D+ FKLYDT+G P+++ +++ +G Sbjct: 358 REEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F A++EQ+ RARA+ + GS G + S+ E+ S F Sbjct: 417 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLSSITEE--------------SVF 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 ED +VL S + I+ + E GQ + +VF +TPFYAE GGQ+ Sbjct: 462 SYED-EVL------------DSTLSVIIADNKRTEAVSEGQAL-LVFAKTPFYAEMGGQV 507 Query: 529 GDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G D I ++TDVQK G +H V L + L ID + R ++ N Sbjct: 508 ADHGMIKNDKGDIVARVTDVQKAPNGQALHTVDV-LASLSVGTTYTLEIDSKRRHRVIKN 566 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 567 HTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNA 626 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +PV T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T EI Sbjct: 627 IPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIG 681 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765 + IV E I +G RRI A+T + A ++E LK++A+ LKV Q V +V + E Sbjct: 682 IFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQE 741 Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820 + KLQ +A+ K + + + N + +I S+V D+ L++ D ++K Sbjct: 742 QLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQKD 801 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++L EK ++ ++D+ +A +L + A ++ G GGG+P MA +GG Sbjct: 802 YSDVLVLAAAIGEKVNVLVASKSKDV----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 856 Query: 881 NGNKADQAIAGVASFL 896 + K +A VA L Sbjct: 857 DAAKIADLLAAVAENL 872 >gi|308184987|ref|YP_003929120.1| alanyl-tRNA synthetase [Helicobacter pylori SJM180] gi|308060907|gb|ADO02803.1| alanyl-tRNA synthetase [Helicobacter pylori SJM180] Length = 847 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 329/888 (37%), Positives = 495/888 (55%), Gaps = 61/888 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG +P + Q Sbjct: 3 IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + ++I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFERIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++EQ R++A G + + ++ Y +F+GY Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGY--------------------- 451 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + T ++ ++ + + EA Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 452 -ETTECLAKVLGFFDSDFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDKGALLKDNEEA 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 + K G+ +++ + + + + D R +++ +HSATHLL AL +L Sbjct: 511 ALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A Sbjct: 569 GLHVSQAGSLVESKRLRFDFSHPKALNDEELERVEDLVNAQIFKHLNSQVEHMPLNQAKD 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+R Sbjct: 629 KGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVSSGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ G+ ++++LK+ + LK +V+ + ++ E + Q K + + Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KAPVSM 737 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 DL K+ V+ + ++ + D KE+ +D L+ K + + M+ KE + L Sbjct: 738 ---DLPIEKVHGVSLVVGVVEQGDIKEM---IDRLKSKHEKLLAMV--FKKENERITLAC 789 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++ + NA A A++L GG GGGR A +GG + K A+ Sbjct: 790 GVKNAPIKANA--WANEVAQIL-GGKGGGRDDFASAGGKDTEKLQAAL 834 >gi|148985664|ref|ZP_01818818.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71] gi|147922145|gb|EDK73267.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71] gi|301800251|emb|CBW32870.1| alanyl-tRNA synthetase [Streptococcus pneumoniae OXC141] Length = 872 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 348/926 (37%), Positives = 508/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESAFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K + +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELALII-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|168491286|ref|ZP_02715429.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04] gi|183574430|gb|EDT94958.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC0288-04] Length = 872 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 348/926 (37%), Positives = 508/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 498 SFYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K + +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|306833055|ref|ZP_07466186.1| alanine--tRNA ligase [Streptococcus bovis ATCC 700338] gi|304424764|gb|EFM27899.1| alanine--tRNA ligase [Streptococcus bovis ATCC 700338] Length = 888 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 343/916 (37%), Positives = 507/916 (55%), Gaps = 74/916 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 23 AQVRQIWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDNPRITNA 82 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT FD + Sbjct: 83 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDFPK 138 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 139 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 194 Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 L E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 195 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 254 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I DG LP Sbjct: 255 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 313 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + IE+ ++ Sbjct: 314 GNEGRGYVLRRLLRRAVMHGRRLGIKETFLYKLVPTVGKIMESYYPEILEKQDFIEKIVK 373 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G +LD +L+ L GKD + D+ FKLYDT+G P+++ +++ +G Sbjct: 374 REEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 432 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F A++EQ+ RARA+ + GS G + S+ E+ S F Sbjct: 433 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLSSITEE--------------SVF 477 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 ED +VL S + I+ E E GQ + +VF +TPFYAE GGQ+ Sbjct: 478 SYED-EVL------------DSTMSVIIADNERTEAVSEGQAL-LVFAKTPFYAEMGGQV 523 Query: 529 GDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G D I ++TDVQK G +H V L + L ID + R ++ N Sbjct: 524 ADHGVIKNDKGDIVARVTDVQKAPNGQALHTVEV-LASLSVGTTYTLEIDSKRRHRVIKN 582 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 583 HTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNA 642 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +PV T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T EI Sbjct: 643 IPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIG 697 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765 + IV E I +G RRI A+T + A ++E LK++A+ LKV Q V +V + E Sbjct: 698 IFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQE 757 Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820 + KLQ +A+ K + + + N + +I S+V D+ L++ D ++K Sbjct: 758 QLHKLQKENAELKEKAAAAQAGDVFEDVKEANGVRYIASQVTVSDAGALRTFADNWKQKD 817 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++L EK ++ +D+ +A +L + A ++ G GGG+P MA +GG Sbjct: 818 YSDVLVLAAAIGEKVNVLVASKAKDV----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 872 Query: 881 NGNKADQAIAGVASFL 896 + K +A VA L Sbjct: 873 DAAKIADLLAAVAENL 888 >gi|320546404|ref|ZP_08040719.1| alanine--tRNA ligase [Streptococcus equinus ATCC 9812] gi|320448789|gb|EFW89517.1| alanine--tRNA ligase [Streptococcus equinus ATCC 9812] Length = 891 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 341/915 (37%), Positives = 505/915 (55%), Gaps = 72/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 26 AQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 85 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT FD + Sbjct: 86 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGFELLTSPEWFDFPK 141 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 142 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 197 Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 L E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 198 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 257 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I DG LP Sbjct: 258 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 316 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + IE+ ++ Sbjct: 317 GNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEVLEKREFIEKIVK 376 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G +LD +L+ L GKD + D+ FKLYDT+G P+++ +++ +G Sbjct: 377 REEETFARTIDAGSNMLDQLLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 435 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F A++EQ+ RARA + GS + + S ++ S F Sbjct: 436 FK-IDHAGFEAAMKEQQERARASVVKGGSMSMQNETLS-------------NITEESVFS 481 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 E+ +VL S + I+ E E GQ + +VF +TPFYAE GGQ+ Sbjct: 482 YEE-EVL------------DSTLSVIIADNECTEAVSEGQAL-LVFAKTPFYAEMGGQVA 527 Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G D I ++TDVQK G +H V L + L ID + R + NH Sbjct: 528 DHGVIKNDKGDIVARVTDVQKAPNGQALHTVEV-LASLSVGTTYTLEIDSKRRHSVIKNH 586 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I + Sbjct: 587 TATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTADELRQIEEEVNQQIWNAI 646 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV+T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T EI + Sbjct: 647 PVITVETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIGI 701 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+TG+ A ++E LK++A LKV Q V +V + E+ Sbjct: 702 FKIVKEEGIGSGTRRILAVTGKEAFEAYRQEEEDLKAIAETLKVPQLKEVTKKVVSLQEQ 761 Query: 767 YRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821 KLQ +A+ K + + + N + I S+V D+ L++ D ++K Sbjct: 762 LHKLQKENAELKEKAAAAQAGDVFKDVKEANGLRFIASQVTVSDAGALRTFADNWKQKDY 821 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++L EK ++ ++D+ +A +L + A ++ G GGG+P MA +GG + Sbjct: 822 SDVLVLAAAIGEKVNVLVASKSKDV----HAGNLIKTLAPIV-SGRGGGKPDMAMAGGSD 876 Query: 882 GNKADQAIAGVASFL 896 K +A VA L Sbjct: 877 AAKIADLLAAVAENL 891 >gi|315613410|ref|ZP_07888319.1| alanine--tRNA ligase [Streptococcus sanguinis ATCC 49296] gi|315314645|gb|EFU62688.1| alanine--tRNA ligase [Streptococcus sanguinis ATCC 49296] Length = 874 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 343/931 (36%), Positives = 512/931 (54%), Gaps = 92/931 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G + +++ L G++ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V +V E E VS ++F +T Sbjct: 469 -----------------------------PSKLVAIVVDNAEAEVETVSEGTASLIFAET 499 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + + ++ +TDVQK G +H V L + + L+ID Sbjct: 500 PFYAEMGGQVADHGQILDESGKVVATVTDVQKAPNGQPLHTVEV-LAPLSLDKNYKLSID 558 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE Sbjct: 559 KNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 618 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + + V T + + A GA +L G KY VRVV++ G +S LCGG Sbjct: 619 QQVNEKIWEAIAVETVETDIDTAKEMGAMSLFGEKYGKEVRVVTI-----GDYSVELCGG 673 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 674 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 733 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ +A+ K + NV++ + H+ +++ +S D Sbjct: 734 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHR-----YIASQVSVSD 788 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV + + K +VL+ + +A +L + A ++ Sbjct: 789 AGALRTFADNWKQKDYSDVLVLVA-AIDDKVNVLVASK---IKEVHAGNLVKELAPIV-D 843 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG N K + + VA L Sbjct: 844 GRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 874 >gi|322389170|ref|ZP_08062731.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 903] gi|321144075|gb|EFX39492.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 903] Length = 872 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 345/931 (37%), Positives = 509/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPSVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G ++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQTIVEDLKAKGQTVIAGQDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESSFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + + +TDVQK G +H V L L ID Sbjct: 498 PFYAEMGGQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++IE Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ +A+ K + NV++ + H+ +++ +S D Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHR-----YIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K ++ T+D+ +A ++ + A ++ Sbjct: 787 AGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNVIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG N K + + VA L Sbjct: 842 GRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|307709086|ref|ZP_07645545.1| alanyl-tRNA synthetase [Streptococcus mitis SK564] gi|307620032|gb|EFN99149.1| alanyl-tRNA synthetase [Streptococcus mitis SK564] Length = 872 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 349/926 (37%), Positives = 506/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I + +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEADMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGIASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + L +T+VQK G +H V L L ID Sbjct: 498 PFYAEMGGQVADHGQILDAAGNLVATVTNVQKAPNGQALHTVEV-HAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K + +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|167771374|ref|ZP_02443427.1| hypothetical protein ANACOL_02740 [Anaerotruncus colihominis DSM 17241] gi|167666014|gb|EDS10144.1| hypothetical protein ANACOL_02740 [Anaerotruncus colihominis DSM 17241] Length = 926 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 327/916 (35%), Positives = 505/916 (55%), Gaps = 61/916 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCND-PTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + ++ +R FL FF+ H LPS L+P D +L+ NSGM P K F G E P + Sbjct: 50 TGLNELREKFLSFFESKEHLRLPSFPLMPSADEASLLLINSGMAPMKKWFLGLETPPRRR 109 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VTT QKC+R D++NVG+T RH T+FEMLGNFSFG YFK A AW+ +TK ++ Sbjct: 110 VTTCQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKHEATAWAWEFITKALEM 165 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 RL+++VY++D+EA ++W K G+ +I+R+ DNFW + +GPCGPCSEI+FD+G Sbjct: 166 PVDRLWVSVYEDDDEAEQIWTKEVGVDPSRIVRLGKEDNFWEIG-SGPCGPCSEIYFDRG 224 Query: 181 ECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P G + +RY+E WNLVF QF+ + +IDTGMGLER+A ++Q Sbjct: 225 EQYGCGKPTCGVGCDCDRYVEFWNLVFSQFDGDGNGHYERMEHPNIDTGMGLERLACIMQ 284 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 N +++D +++++ ++ G++Y + V+ RVI DH+RS++F+++DGILP NEG Sbjct: 285 GVDNLFEVDTVQNILKHVARIAGVEYHTDAKTDVSLRVITDHIRSTTFMVSDGILPQNEG 344 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + RLLG EP + + + E +AYPEL++ + I + ++ E+E Sbjct: 345 RGYVLRRLLRRAARHGRLLGIHEPFLYQVCETVIQENANAYPELVEHRDYITKVIKVEEE 404 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 RF +T+D+G+ LL ++ + + +I+ G AF+LYDT+G P+D++++IL R + + Sbjct: 405 RFARTIDQGMELLTAIIDKIDSEMDKKIMPGADAFRLYDTYGFPVDLIREILAERKIK-L 463 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F + ++ Q+ RAR LG E+ + +G +F+GY + Sbjct: 464 DEEEFARQMQAQKQRAREARAALGDLGWEEDVLADVADHG--RFVGYTEM---------- 511 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + + AI++ + V+E G+ +V D TPFYAE+GGQ GD+G Sbjct: 512 -------------AAQAHIVAIIKDDKRVDELHDGELGSIVLDVTPFYAESGGQAGDSGL 558 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G + D +K G FVH + G L S+ I+ R + NH+A HLL Sbjct: 559 ISAGGNVFAVYDCKKSKTGHFVHIGELTAGTLAVGDSVSAAINVDRRADIMRNHTACHLL 618 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LG HV Q G+ RFD +H +T ELK +E+ VN ++ ++ V Sbjct: 619 QAALRQVLGDHVHQAGAFYDDTICRFDFSHFSAVTPEELKRVEELVNRVVLASIDVSVSE 678 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M ++A GA AL G KY D VRV SV E S LCGGTH+ +T ++ L IV E Sbjct: 679 MPIDEAKKLGAMALFGEKYGDVVRVCSVPGE-----SVELCGGTHLKNTAQVGLFRIVKE 733 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE----EIWEEYR 768 SS+ AG+RRIEA+TG+ + Q+ ++ A+ LKV + R E E E+ R Sbjct: 734 SSVAAGVRRIEAVTGRNVLRLMDEQETTMEKTAAALKVGNLSELPARAEALNAESREQKR 793 Query: 769 KLQLIHAK-RKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 +L+ AK + QL N + + IA V M +++D+ L+ + D ++ Sbjct: 794 RLEAAEAKLAESQLSGVFDNAQQVGGIYIASVAMMG---AKIDA--LRRMGDRVRDSRPD 848 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + ++ + K S+L+V +D + + L GG GGGRP A G Sbjct: 849 AVCAFSTVN-DGKGSILVVCGKDAVAKGAHAGKIVKELTALCGGSGGGRPDNAMGGTSEI 907 Query: 883 NKADQAIAGVASFLKK 898 + D+A+A + + + K Sbjct: 908 FRIDEAMAQLPAIVGK 923 >gi|303236524|ref|ZP_07323109.1| alanine--tRNA ligase [Prevotella disiens FB035-09AN] gi|302483272|gb|EFL46282.1| alanine--tRNA ligase [Prevotella disiens FB035-09AN] Length = 897 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 331/935 (35%), Positives = 498/935 (53%), Gaps = 98/935 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F +FF+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 12 MMTANEIRDSFKKFFESKGHVIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 71 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L + L Sbjct: 72 RADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKENAIDYAWEYLVEVLKL 131 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D + LY+TV++ D+EA W K L D II +DNFW M ETGPCGPC Sbjct: 132 DPKDLYVTVFEGSPEEGIARDDEAASYWAK--HLPEDHIINGNKHDNFWEMGETGPCGPC 189 Query: 173 SEIFFDQGEC-IPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D +PG +++ + IEIWN+VFMQF++++ L IDTGM Sbjct: 190 SEIHVDSRSAEEKAKVPGRELVNKDDPQVIEIWNIVFMQFQRKSDGTLEPLAMNVIDTGM 249 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNIVNH-------R 273 G ER+ +LQ K +NYD D+F+ I+ E+++G KY EG R Sbjct: 250 GFERLVRMLQGKNSNYDTDIFQPTIKEIERLSGKKYGFTTPSGKEGEGKTEQEKIDIAMR 309 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332 V+ DH+R+ +F IAD LP N GYV+RRI+RRA+ YA L E + LL E Sbjct: 310 VVADHMRAVAFSIADSQLPGNAKAGYVIRRILRRAVRYAYTFLEQKEAFIYKLLNTFIHE 369 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFK 389 MG+AYPEL + LI ++ E++ F +TL++G+ LL + + GK E L+G AF+ Sbjct: 370 MGNAYPELPAQRELIARVIKEEEDSFLRTLEKGINLLTNAMDEMKAQGKTE-LDGKEAFR 428 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 L+DT+G PLD+ + ++C +D F + +Q++RAR ++ + +G W LK Sbjct: 429 LFDTYGFPLDLTE-LICRENGFTVDEKQFEAEMAQQKARARNAAV-VENGD----WVVLK 482 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 E G +F+GYD + RKV +K Sbjct: 483 E--GEQEFVGYDYTEYECHILRYRKVTQKKNTF--------------------------- 513 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 E+V D TPFY E GGQ+GD G + + + I D K+ +H IV++ E Sbjct: 514 -FEIVLDHTPFYGEMGGQVGDQGVLVSEDETIDIIDT-KRENNQSIH--IVKQMPKNVEA 569 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + +D R + NH+ATHLL +AL +LG H Q GS ++ D LRFD +H + +T Sbjct: 570 DFMACVDTDKRDASAANHTATHLLDYALKQVLGDHCEQKGSYVSADTLRFDFSHFQKVTD 629 Query: 630 AELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 EL+ +E VND+I Q+L R E+A GA AL G KY D+VRV+S Sbjct: 630 EELRQVERMVNDMIRQDLKCDEHRNTPLEEAKKMGAVALFGEKYGDKVRVISFG------ 683 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S CGG H +STG I IV+ESS+ AGIRRIEA+TG++ + ++ ++ L + Sbjct: 684 PSCEFCGGIHATSTGRIGFFKIVNESSVAAGIRRIEALTGEQCEEAVYELEDTMRDLKAM 743 Query: 749 LKVSQG--NVVGR-------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSH 799 ++ +VV + +++ E +R+ + L + E ++ K+ Sbjct: 744 FNNAKDLKSVVAKYIQEHDAMKKEMESFRQQAVSRMANGLVESAETVNGVKVVKA----- 798 Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLAR 857 + V+ K ++ +++ I ++ ++G + E K + I++++D++ NA + R Sbjct: 799 -VLPVEPASAKDIVFKVREAIPEKLVCVLGSTHENKPLLSIMLSDDMVKDHELNAGKIIR 857 Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 +AK++ GGGGG+PH AQ+GG + A+ V Sbjct: 858 EAAKLI-KGGGGGQPHYAQAGGKDVEGVSAAVEKV 891 >gi|325298627|ref|YP_004258544.1| alanyl-tRNA synthetase [Bacteroides salanitronis DSM 18170] gi|324318180|gb|ADY36071.1| alanyl-tRNA synthetase [Bacteroides salanitronis DSM 18170] Length = 872 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 341/920 (37%), Positives = 514/920 (55%), Gaps = 82/920 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +F++FF+ GH+++PS+ ++ +DPTLMFTN+GM FK+I G Y+ Sbjct: 1 MLTANEIRDSFVKFFESKGHQIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNHPAKYKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VT QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ I AW+ L + Sbjct: 61 VTDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEVIGWAWEYLVDVLKI 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D LY TV+ + D EA W++ L D II +DNFW M +TGPCGPC Sbjct: 121 DPSILYATVFEGSPEEGLERDNEAAGYWEQY--LPKDHIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D + E +PG +++ IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRSEEEKAKVPGRELVNKDNPLVIEIWNLVFMQYNRKADGSLEPLPAKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLI 286 G ER+ LQ K +NYD D+F+ +I+ +TG+ Y + V+ RV+ DH+R+ +F I Sbjct: 239 GFERLCMALQGKKSNYDTDVFQPIIKVIGDLTGLTYGKDPKVDVAMRVVADHIRTIAFSI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG LP+N GYV+RRI+RRA+ YA LG + M L+P L MG AYPEL + Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMFKLVPVLIENMGQAYPELKAQQP 358 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 LIE+ ++ E+E F +TL+ G+ LLD V+ + + ++G AF LYDT G PLD+ + Sbjct: 359 LIEKVIKEEEEAFLRTLETGIRLLDKVMNDAKAAQKTEISGVDAFTLYDTFGFPLDLTEL 418 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL G+ ++ FN +++Q+ RAR ++ + +G W L+E G T F+GYD Sbjct: 419 ILRENGMT-VNEEEFNIEMQKQKQRAR-NAAAIETGD----WVILEE--GETHFVGYD-- 468 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + + + ++L + I Q+ + + ++V +TPFYAE Sbjct: 469 ----YTEYETRILR--------------YRQIKQKNQTL--------YQIVLSETPFYAE 502 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ+GDTG + + ++I D KK + +H I ++ + ++ +D R Sbjct: 503 SGGQVGDTGVLVSEFETIEIIDT-KKENNLPIH--IAKQLPEHLDAPMMACVDTDKRAAC 559 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + NHS THLL AL +LG+HV Q GS +TP+ LRFD +H + +T +L+ +E VN I Sbjct: 560 AANHSCTHLLDEALRQVLGTHVEQKGSLVTPESLRFDFSHFQKVTPEQLREVEHLVNAKI 619 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 +N+P+ R + E A GA AL G KY D VRVV S CGGTHVS+T Sbjct: 620 RENVPLTEYRNLPIEKAKELGAIALFGEKYGDEVRVVQFG------SSIEFCGGTHVSAT 673 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHL-MGQD--EKLKSL---ASFLKVSQGNV 756 G+I ++ I+SESS+ AG+RRIEAITG + + + QD LK+L A L+ + Sbjct: 674 GKIGMVKILSESSVAAGVRRIEAITGAKVEEMMDILQDTINDLKALFNNAPDLRAAISKY 733 Query: 757 VGR---VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813 V +++ EE+ K + AK +L + +++ H + + M + E +K++ Sbjct: 734 VDENAGLKKQMEEFMKEREASAKARLIESAKEI--HGVKVIKAMLPMRPEA----IKNIA 787 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872 L+ + + +++G + K + +++++D + NA L R +AK++ GGGGG+P Sbjct: 788 FQLKGQFPENLFVVIGSIFDDKPMLTVIMSDDQVKAGLNAGQLVREAAKLI-QGGGGGQP 846 Query: 873 HMAQSGGPNGNKADQAIAGV 892 H A +GG N + AI V Sbjct: 847 HFATAGGKNADGLSAAIDKV 866 >gi|306830937|ref|ZP_07464099.1| alanine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426960|gb|EFM30070.1| alanine--tRNA ligase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 888 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 342/916 (37%), Positives = 508/916 (55%), Gaps = 74/916 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 23 AQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 82 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT FD + Sbjct: 83 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDFPK 138 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 139 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 194 Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 L E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 195 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 254 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I DG LP Sbjct: 255 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 313 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + IE+ ++ Sbjct: 314 GNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEILEKQDFIEKIVK 373 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G +LD +L+ L GKD + D+ FKLYDT+G P+++ +++ +G Sbjct: 374 REEETFARTIDAGSSMLDELLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 432 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F A++EQ+ RARA+ + GS G + S+ E+ S F Sbjct: 433 FK-IDHAGFEAAMKEQQERARANVVKGGSMGMQNETLSSITEE--------------SVF 477 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 ED +VL S + I+ + E GQ + +VF +TPFYAE GGQ+ Sbjct: 478 SYED-EVL------------DSTLSVIIADNKRTEAVSEGQAL-LVFAKTPFYAEMGGQV 523 Query: 529 GDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G D I ++TDVQK G +H V L + L ID + R ++ N Sbjct: 524 ADHGMIKNDKGDIVARVTDVQKAPNGQALHTVDV-LASLSVGTTYTLEIDSKRRHRVIKN 582 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 583 HTATHLLHAALHNVIGEHATQAGSLNEEGFLRFDFTHFEAVTAEELRQIEEEVNQQIWNA 642 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +PV T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T EI Sbjct: 643 IPVKTIETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIG 697 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765 + IV E I +G RRI A+T + A ++E LK++A+ LKV Q V +V + E Sbjct: 698 IFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEEDLKTIAATLKVPQLKEVTNKVASLQE 757 Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820 + KLQ +A+ K + + + N + +I S+V D+ L++ D ++K Sbjct: 758 QLHKLQKENAELKEKAAAAQAGDVFKDVKEANGVRYIASQVTVSDAGALRTFADNWKQKD 817 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++L EK ++ ++D+ +A +L + A ++ G GGG+P MA +GG Sbjct: 818 YSDVLVLAAAIGEKVNVLVASKSKDV----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 872 Query: 881 NGNKADQAIAGVASFL 896 + K +A VA L Sbjct: 873 DAAKIADLLAAVAENL 888 >gi|113478168|ref|YP_724229.1| alanyl-tRNA synthetase [Trichodesmium erythraeum IMS101] gi|122964340|sp|Q10VG8|SYA_TRIEI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110169216|gb|ABG53756.1| alanyl-tRNA synthetase [Trichodesmium erythraeum IMS101] Length = 874 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 343/897 (38%), Positives = 511/897 (56%), Gaps = 55/897 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL F+ + H +LPS+SL+P DPT++ T +GM+PFK IF GQ+ Y TT Sbjct: 9 NEIRKKFLSFYAQREHTILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQPRQYPRATTS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK AI LAW+L TK F L R Sbjct: 68 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKPEAIALAWELSTKIFALPPER 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ ED+EAF +W+ G+ A +I R+ DNFW+ TGPCGPCSEI++D + Sbjct: 124 LVVSVFREDDEAFAIWRDQIGIPAHRIQRMDEADNFWASGPTGPCGPCSEIYYDFHPEL- 182 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ+ NNY Sbjct: 183 GDDHIDLEDDTRFIEFYNLVFMQYNRDANGNLTPLENRNIDTGMGLERMAQILQKVPNNY 242 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + + + Y ++ V+ +VI DH+R+ + LIADG+ +N GRGY+L Sbjct: 243 ETDLIFPIIKTASDIADIDYRKSDDKTKVSLKVIGDHVRAVANLIADGVTASNVGRGYIL 302 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + T YP L + + +I+ L+ E+ RF +T Sbjct: 303 RRLIRRVVRHGRLIGISGEFTSKVAETAITLAEDIYPNLRERETVIKAELQREESRFLET 362 Query: 362 LDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 L+RG LL +++ K + ++G+ AFKLYDT+G PL++ Q+I GL +D+ F+ Sbjct: 363 LERGEKLLAEIMAKPETKKTQHISGEDAFKLYDTYGFPLELTQEIAEENGLT-VDVSMFD 421 Query: 420 Q--ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 Q L + RS++ ++ L + +K TQF+GY Sbjct: 422 QEMKLAQIRSQSAHETIDLTAQD------GVKLDIDKTQFLGY----------------- 458 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 DL++ V A+V GE +E +G +V++V D+TPFYAE+GGQ+ D G GD Sbjct: 459 ----TDLSSPAQ--VMALVGDGEQLETVQAGAQVQIVLDKTPFYAESGGQIADRGYLSGD 512 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + ++I DVQK+ IFVH +ERG L+ M++ ID RR+ NH+ATHLL AL Sbjct: 513 SLVVRIEDVQKQ-NNIFVHFGRIERGRLQLGMTVNAQIDGTCRRRAQANHTATHLLQAAL 571 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +++ S +SQ GS ++ D LRFD + + E++ +E VN IA+ M E Sbjct: 572 RSLVDSSISQAGSLVSFDRLRFDFNCPRGLKPEEVEQVEAQVNSWIAEAHSATVAEMPLE 631 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A A GA A+ G KY D VRVV GV S LCGGTHV++T EI + I+SE+ I Sbjct: 632 VAKAKGAVAMFGEKYADVVRVVDYP----GV-SMELCGGTHVNNTAEIGVFKIISEAGIS 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHA 775 +G+RRIEA+ G +L +D +K L+ K + RV + +E + + QL Sbjct: 687 SGVRRIEAVAGLAVLDYLKVRDAVVKELSDRFKAKPEELSERVSNLQQELKDSQKQLEAL 746 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISE---VDSKELKSVMDALQKKIQSGIIMLVGISK 832 K +L + D V +++E VD++ LK+ + LQ+K+ ++L G + Sbjct: 747 KGELAVAKSDQLLGNAETVGEFQILVAEMPGVDAEALKTAAERLQQKLDESAVVL-GSAA 805 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K S++ ++ + + + GGGGGGRP++AQ+GG + +K +A+ Sbjct: 806 EGKVSLVAAFSKSVNGKGLQAGKFIGGIAKICGGGGGGRPNLAQAGGRDPSKLKEAL 862 >gi|331266120|ref|YP_004325750.1| alanyl-tRNA synthetase [Streptococcus oralis Uo5] gi|326682792|emb|CBZ00409.1| alanyl-tRNA synthetase [Streptococcus oralis Uo5] Length = 872 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 344/925 (37%), Positives = 500/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y ED++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPADKLYMTYYPEDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +TP Sbjct: 469 ----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + +TDVQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDAKGNVVATVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAIDT 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + + N +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVNEANGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+D+ +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNLVKELAPIV-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + VA L Sbjct: 848 PDMAMAGGSNQAKIQDLLDAVAGKL 872 >gi|326803428|ref|YP_004321246.1| alanine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a] gi|326651546|gb|AEA01729.1| alanine--tRNA ligase [Aerococcus urinae ACS-120-V-Col10a] Length = 883 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 333/919 (36%), Positives = 504/919 (54%), Gaps = 71/919 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +++F++ GH++ PS+SL+P NDPTL++ NSG+ K+ G E P + QK Sbjct: 9 IRQMWIDFWKGKGHDIYPSASLVPDNDPTLLWMNSGVAALKHYLDGSEVPENPRIANAQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRR 124 C+R ND++NVG T RH TFFEMLGN+S G YFKE I AW+ LT E LD Sbjct: 69 CIRT----NDIENVGVTARHQTFFEMLGNWSVGDYFKEEVIPWAWEFLTDEKWLGLDPEL 124 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 LY+T Y +D+ + LW+K++GLS D + + DNFW + GPCGP +EIFFD+G+ Sbjct: 125 LYMTYYPDDDVSHGLWQKVTGLSEDHFVSL--EDNFWDLG-AGPCGPDTEIFFDRGKAYQ 181 Query: 184 ------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 P PG E ERY+EIWN+VF +F L + ++DTGMGLER+++VL Sbjct: 182 DLDDDDPEMFPGG--ENERYLEIWNIVFSEFNHMPDGSYEKLKQHNVDTGMGLERISSVL 239 Query: 238 QEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPAN 294 QE N++ DL LI+ E+++ G KY + + +VI DH+R+ SF + D LP+N Sbjct: 240 QETPTNFETDLLFPLIKEVEKLSDGKKYGESKETDTAMKVIADHIRAVSFAVGDNALPSN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGY+LRR++RR++ Y R LG + L+P + +M YPEL + + +I+E + E Sbjct: 300 EGRGYILRRLIRRSVMYGRRLGIQGSFLAKLVPIVADKMEKHYPELKEKEAIIQEVVDRE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ++RF +T+ G ++ ++ L + + L+G AFKLYDT+G PL++ ++ L G + Sbjct: 360 EKRFQETIADGENIIKNKIAELEESGENSLDGQSAFKLYDTYGFPLELTEEYLAETGFS- 418 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +DI FNQA+EEQ+ RARA G + L E + F GY+ Sbjct: 419 VDIDGFNQAMEEQKERARAARKDQGGLAVQST--VLGEIDVPSHFTGYEE---------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 D+T + + AIV Q EI +EA + K + ++TPFY E GGQ+GD+G Sbjct: 467 ----------DVT---ETKINAIVYQDEISQEAPANSKAYFIAEKTPFYGERGGQVGDSG 513 Query: 533 CAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 DG L K A H I + + L +D RR + NH+ATH Sbjct: 514 KLYNLDGELLGYIRDTKHAPNDQNLHYIDTVQPISVGQEVRLEVDSARRRLIRNNHTATH 573 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LLH L +LG V+Q GS + LRFD T+ ++S +L+ +E VN+ I + +PV T Sbjct: 574 LLHRVLKDVLGEQVNQAGSLLDEHYLRFDFTYFGQVSSDQLEEVERRVNEKIWEQIPVET 633 Query: 652 RIMNREDAIASGAAALLGTKY---NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + A GA AL G KY +D +RV++++ S LCGGTHV +TG I L Sbjct: 634 IFTTVKAAKEHGAIALFGEKYLKLHDEIRVINID-----DWSMELCGGTHVKNTGFIGLF 688 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEY 767 I+SES I +G+RRIEA+T + A + + L + LKV + +V R++++ E Sbjct: 689 KIISESGIGSGVRRIEALTSKAAYEYYEAKLGLLNQVRDDLKVKKAEDVPHRLQQLEGER 748 Query: 768 RKLQLIHAKRKLQLNVEDLSCHKIADV----NFMSHIISEVDSK---ELKSVMDALQKKI 820 + L+ L ++ +I D N + +I E+D K +L+++ D ++ Sbjct: 749 KSLE--SEVESLHAKANQMAASQIFDAVKESNGVRYIAEELDHKTMDDLRAISDEWKQNN 806 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L + + KA++L+ V+ D + A D+ + A + GGGGGRP +AQ+GG Sbjct: 807 YSDVLVLATANGD-KANMLVAVSPDKVKEGLKAGDIIKELAPYI-NGGGGGRPELAQAGG 864 Query: 880 PNGNKADQAIAGVASFLKK 898 N A+ + L K Sbjct: 865 KNPAGIPDALKALEEVLNK 883 >gi|86741900|ref|YP_482300.1| alanyl-tRNA synthetase [Frankia sp. CcI3] gi|123750882|sp|Q2J821|SYA_FRASC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|86568762|gb|ABD12571.1| alanyl-tRNA synthetase [Frankia sp. CcI3] Length = 881 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 335/897 (37%), Positives = 492/897 (54%), Gaps = 56/897 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR+ FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G + Sbjct: 2 DTAEIRSRFLNHFARRGHTVVPSASLV-AQDPTLLLVNAGMVPFKPYFLGDLPAPWPRAA 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQKCVR D++NVG T RH +FF+M GNFSFG YFK AI A++LLT+ F Sbjct: 61 SVQKCVRT----VDIENVGHTARHASFFQMCGNFSFGDYFKAEAIPFAFELLTEGFGFKA 116 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L+ TVY +D+EA +W+K+ L A++I R DNFWSM GPCGPCSEI+FD+G C Sbjct: 117 DDLWATVYLDDDEAEGIWRKL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRG-C 173 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQ------ERFILPKMSIDTGMGLERMATV 236 G G + ERY+E+WNLVFMQ+E+ ER LP +IDTGMGLERMAT+ Sbjct: 174 AYGREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPIER-ELPARNIDTGMGLERMATI 232 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPAN 294 LQ N Y+ID+ + ++ A+ ++TG +Y + + V RVI DH R+++ LI+DG++P+N Sbjct: 233 LQGVDNLYEIDISRPVLDAAGRLTGRRYGADPADDVRLRVIADHTRTAAMLISDGVVPSN 292 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ ARLLG EP+M L + + MG+ YPEL+ I +E Sbjct: 293 EGRGYVLRRMLRRAIRNARLLGAHEPVMSELFAVVGSAMGTIYPELLDNAETITGVAVAE 352 Query: 355 DERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++ F +TL G + D LG L G+ AFKL+DT+G P+D+ ++ GL+ Sbjct: 353 EQAFAETLRTGTTIFDTAARQARSLGS-TTLGGEAAFKLHDTYGFPIDLTLEMAAEAGLS 411 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMK 470 +D F + ++ QR A+A G + F + + G T F GY+ L Sbjct: 412 -VDEAGFRRLMDRQRQAAKADRAARRIGNVDLSAFRPILARSGPTTFTGYEEL------- 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 T+GV +V + A +V VV D TPFYAE+GGQ D Sbjct: 464 ------------SRTSGVVGLVGIADGA--GLAAAGEDTEVGVVLDATPFYAESGGQEPD 509 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G DG +++ DVQ+ + +H V G LR + + +D RR +S +H+AT Sbjct: 510 LGRLRFDGGEVEVLDVQRPVPDLVLHRVRVLGGELRLGVEVFAEVDADRRRAVSRSHTAT 569 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H A LG +Q GS +P LRFD + + L +ED +N++ ++LPV Sbjct: 570 HLVHTAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLADVEDEINEVALRDLPVR 629 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + +E+A GA AL G KY D VRVV V G ++ LCGGTHV+S+ ++ + + Sbjct: 630 AFVTTQEEARRLGAMALFGEKYGDAVRVVDV-----GDYARELCGGTHVASSAQLGAVKL 684 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR-- 768 +SE+SI AG RR+E + G A +L + + L++ LK +V RV +I R Sbjct: 685 LSEASISAGTRRVEGLVGLDAFRYLAREHLLVSQLSTALKARPDELVDRVTDIVGRLRDA 744 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ---SGII 825 + +L + L +V ++ + +EV + + L ++ +G Sbjct: 745 ERELERLRAAAVLAGAGALAEGAEEVAGVAVVTAEVPAGTAPDDVRLLALDVRGRLAGRP 804 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 +V ++K +S+++V + R A DL R S L GG GGG+P +AQ GG N Sbjct: 805 AVVAVAKADGSSIVVVTDDAARGRGLRAGDLVRQSWASL-GGKGGGKPDVAQGGGGN 860 >gi|281423902|ref|ZP_06254815.1| alanine--tRNA ligase [Prevotella oris F0302] gi|281401990|gb|EFB32821.1| alanine--tRNA ligase [Prevotella oris F0302] Length = 887 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 334/925 (36%), Positives = 502/925 (54%), Gaps = 99/925 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R ++ +FF+ GH+++ S+ ++ +DPTLMFTN+GM +K+I G + P + Sbjct: 1 MMTANEVRESYKKFFEGKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPG-KD 59 Query: 61 VTTV--QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 V V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L Sbjct: 60 VRRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVSVL 119 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L+ LY+TV+ + D+EA W K + AD II +DNFW M +TGPCG Sbjct: 120 HLNPEDLYVTVFEGSPEEGLERDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCG 177 Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PC+EI D + +PG +++ + IEIWN+VFMQ+ ++ LP IDT Sbjct: 178 PCTEIHVDSRTPEEKAKMPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDT 237 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVN 271 GMG ER+ +LQ+K +NYD D+F+ +I+ E ++G KY EG + + Sbjct: 238 GMGFERLVRMLQDKHSNYDTDIFQPIIKQIEAISGKKYGFTTPTGLNGEGKDEQEKIDIA 297 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L E + LLP L Sbjct: 298 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLLPVLV 357 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVA 387 EMG AYPEL + LI ++ E++ F +TL++G+ LL+G + L G+ E L+G A Sbjct: 358 REMGQAYPELPAQQELIARVMKEEEDSFLRTLEKGINLLNGDMDELKAHGQTE-LDGTSA 416 Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447 F+L+DT+G PLD+ + ++C +D FN+ + +Q++RAR ++ + +G W Sbjct: 417 FRLFDTYGFPLDLTE-LICREHGYTVDEKGFNEEMAKQKARARNAAV-VENGD----WEV 470 Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507 ++E G F+GYD + + RKV +K Sbjct: 471 IRE--GEQVFVGYDYTEYTCHILRYRKVTQKKNTF------------------------- 503 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 E+V D TPFY E GGQ+GD G + + ++I D K+ +H IV++ Sbjct: 504 ---YEIVLDYTPFYGEMGGQVGDQGTLVSENETVEIIDT-KRENNQSIH--IVKQLPKDL 557 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + + +D + R + NH+ATHLL +AL +LG HV Q GS + P LRFD +H + + Sbjct: 558 QAEFMACVDVEKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDPTTLRFDFSHFQKV 617 Query: 628 TSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 T EL+ +E VN +I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 618 TDEELRQVEKLVNKMIREDFPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFG---- 673 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 S CGG H STG I I+SESS+ AGIRRIEA+TGQ + + + L Sbjct: 674 --PSCEFCGGIHAKSTGRIGFFKIISESSVAAGIRRIEALTGQACEDTIYALQDMMNDLK 731 Query: 747 SF------LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800 S LK + +G +E+ +E K Q +R E+L + +VN + I Sbjct: 732 SMFNNSKDLKATLKKFIGEHDEMRKEIEKFQAQAVER----TKEEL-LKRAQNVNGVQVI 786 Query: 801 --ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLA 856 + ++ K + L++ I +++++G + K + ++ ++D++ NA + Sbjct: 787 KAVLPLEPAAAKDLAFKLRENISENLVVVIGSTAGNKPLLTVMFSDDMVKDHSLNAGTII 846 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 R +AK++ GGGGG+PH AQ+GG N Sbjct: 847 REAAKLI-QGGGGGQPHYAQAGGKN 870 >gi|328872010|gb|EGG20380.1| alanyl-tRNA synthetase [Dictyostelium fasciculatum] Length = 1018 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 326/815 (40%), Positives = 453/815 (55%), Gaps = 98/815 (12%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +IR+TFL +F +NGH+ + SSLIP ND TL+FTN+GMV FK F E P VTT Q Sbjct: 35 NIRSTFLNYFNENGHKKVDGSSLIPHNDSTLLFTNAGMVQFKQCFAALETPPAPMVTTAQ 94 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGY--FKERAIQLAWDLLTKEFDLDQR 123 KCVRAGGKHNDLDNVG T RHHTFFEMLGNFSFGGY K AI+ AW LLT L Sbjct: 95 KCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGGYKHAKRDAIRHAWQLLTGPMGLPAN 154 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGEC 182 R+ +V + DEEA +W+ GL+ D+I+R DNFWSM + GPCGPCSE+F+D+GE Sbjct: 155 RIVASVLEGDEEAADIWRTEIGLTDDRILRCGPKDNFWSMGDGAGPCGPCSELFWDRGE- 213 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G+ +GERY+EIWNLVFMQ+ + + LP +DTGMGLERMA VLQ+K + Sbjct: 214 ------GNEMDGERYLEIWNLVFMQYWRDDAGNLTPLPTPCVDTGMGLERMAAVLQDKQS 267 Query: 243 NYDIDLFKHLIQASEQVT--------GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 NY+IDLF +LI + V G + + RVI DHLRS SFLIADG++P+ Sbjct: 268 NYEIDLFANLIDGIKSVAEKNDSVFVGKVHADKFETSMRVIADHLRSVSFLIADGVVPSA 327 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GRGYVLR+I+RRA+ Y +++G+ +P + L P L + MG Y +L Q I+ + +E Sbjct: 328 TGRGYVLRKIIRRALSYGQMIGFQQPFLHLLQPLLTSLMGDFYTQLSQRAPQIQNVIYNE 387 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + F + + RG+ LD ++ DE F +Y T+GLPL+I ++ + ID Sbjct: 388 EILFYQAIQRGVTYLDDLIDSNKLDEW----NVFNIYSTYGLPLEI-SEVKARQSNINID 442 Query: 415 IISFNQALEE-QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL------RGSK 467 + Q ++E + + + T +I K + + F+GY+ L + Sbjct: 443 MDKVQQFIDETKEKSKSSWKKDQSNNNTNQILQKWKNENIKSNFVGYEKLHCTTRIKAQH 502 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F +ED + VV + PFYA +GGQ Sbjct: 503 FSEEDNLLY------------------------------------VVLEDCPFYAVSGGQ 526 Query: 528 LGDTG---CAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLT--------- 574 +GD G ++G+G + + D K +G+ V ++E + ++ V+ Sbjct: 527 IGDKGIIVTSVGNGENIYNVIDTLKPYDGVQV--VVIEFDSTKQRLNQVMDDLKVDNKVD 584 Query: 575 --IDYQNRRQLSINHSATHLLHHALSTILGSH-VSQNGSCITPDGLRFDVTHSKPITSAE 631 +D Q R+Q +I+H+ATHLLH AL LG + V Q GS + P+ LRFD T +++ + Sbjct: 585 CRVDKQTRQQTAIHHTATHLLHSALRKELGENSVVQAGSYVGPESLRFDFTAVGKLSNKQ 644 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691 + +IE VN I Q++P+ + M++ DA+ + A L KY D VRVVSV GV S Sbjct: 645 ITNIEQTVNQAIQQDIPLDVQEMSQGDAVKTDAIQLFSEKYGDSVRVVSVP----GV-SK 699 Query: 692 ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV 751 CGGTHV TG+I L IVSE+SI AG RRIEA GQ A + L + LA+ L V Sbjct: 700 EFCGGTHVGKTGDIQLFRIVSETSIAAGTRRIEARAGQAAATWLDSFKSTVDGLATKLGV 759 Query: 752 SQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786 N+VG+ E LI K++L+ V +L Sbjct: 760 PT-NIVGKHVE--------SLIDNKKQLEKQVSEL 785 >gi|116627351|ref|YP_819970.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMD-9] gi|122268047|sp|Q03LZ8|SYA_STRTD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116100628|gb|ABJ65774.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMD-9] Length = 872 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 337/912 (36%), Positives = 508/912 (55%), Gaps = 72/912 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FDL + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDLPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGEE 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + E LP +IDTG GLER+A Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293 V+Q N++ DLF +I+ E+++G Y+ + ++ +VI DH+RS +F I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIGDGALPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K IE+ ++ Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIVKR 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+E F +T+D G +LD +L++L GKD + D+ FKLYDT+G P+++ +++ G Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDI-FKLYDTYGFPVELTEELAEDEGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F A++EQ+ RARA + GS G ++ S+F+ Sbjct: 418 K-IDHEGFKAAMKEQQDRARASVVKGGS-------------MGMQNETLANITEPSEFLY 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 E S + IV + SGQ + +VF+QTPFYAE GGQ+ D Sbjct: 464 E-------------AETAESRLSVIVADDARHDSVNSGQAL-LVFEQTPFYAEMGGQVAD 509 Query: 531 TGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G A G + ++ DVQ+ G +H VE G L + L ID+ R ++ NH Sbjct: 510 HGTISDAAGTTV-ARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G+H Q GS + LRFD TH + +T EL++IE+ VN+ I + Sbjct: 568 TATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + + A + GA AL G KY RVRVVS+ G +S LCGGTHV++T EI + Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAEIGM 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A +++ LKS+A+ LK Q V +V + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASLQEQ 742 Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821 LQ +A K K + + N + +I S+V D+ L++ D ++ Sbjct: 743 LHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++L +EK ++ +E++ +A +L ++ A ++ G GGG+P+MA +GG + Sbjct: 803 SDVLVLAAHIREKVNVLVASKSENV----HAGNLIKVLAPIV-SGRGGGKPNMAMAGGSD 857 Query: 882 GNKADQAIAGVA 893 N ++ VA Sbjct: 858 ANSIQDLLSAVA 869 >gi|317009923|gb|ADU80503.1| alanyl-tRNA synthetase [Helicobacter pylori India7] Length = 847 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 318/837 (37%), Positives = 466/837 (55%), Gaps = 64/837 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL+FFQ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFQNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ +T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISGLTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSHTHAYLKESKEMVVKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL K++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLKHLNKNKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477 ++EQ R++A G + + ++ Y +F+GY+ + F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTECTTKALGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 P Q+V V+ ++TPFYAE GG +GD G D Sbjct: 473 DAKP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALFKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 I K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 NEEAAIVSDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHVSQ GS + LRFD +H K + EL+ +ED VN I ++L M Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS +++ + LCGG HV +TG I IV ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ + ++LK+ + LK +V+ + ++ E + Q + Sbjct: 680 SGVRRIEAVCGKAFYQLAKEESKELKNAKTLLK--NNDVIAGINKLKESVKNSQKVPVSM 737 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 DL KI V+ + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 738 -------DLPVEKIHGVDLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784 >gi|145348968|ref|XP_001418913.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|313471499|sp|A4S051|SYAP_OSTLU RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|144579143|gb|ABO97206.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 906 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 329/843 (39%), Positives = 464/843 (55%), Gaps = 54/843 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 ++IR FL+F++ GH +LPSSSL+P DPT++ T +GM+ FK +F GQ + ++ TT Sbjct: 25 AAIRQRFLKFYETRGHAVLPSSSLVP-EDPTVLLTIAGMLQFKPVFMGQRERAHERATTT 83 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR ND++NVG T RHHTFFEMLGNFSFG YFK+ A Q AW+L T EF L+ R Sbjct: 84 QKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKDACQWAWELATGEFGLNPER 139 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 ++++V+ ED+EAF +W+ + G+ +I R+ DNFW+ TGPCGPCSE+++D P Sbjct: 140 VWVSVFREDDEAFAIWRDVVGVPESRIKRMDEKDNFWAAGPTGPCGPCSELYYD---FYP 196 Query: 185 G-GLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 GL G+ ++ R+IE +NLVFM+ + L +IDTGMGLERMA +LQ N Sbjct: 197 ERGLEGADLDDDSRFIEFYNLVFMELNRDADGGVTPLKNKNIDTGMGLERMAQILQGVPN 256 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I + + G+ Y N V +VI DH R+ S++I+DG+ +N GRGY Sbjct: 257 NYETDLIMPIINKAASMAGIDYNACNDVQKQQLKVIGDHTRAVSYMISDGVFASNIGRGY 316 Query: 300 VLRRIMRRAMCYARLLGY-TEPLMMHLLPALCTEMGSAY----PELIQAKLLIEETLRSE 354 ++RR++RR + RLLG E PA+ S P++ + I L E Sbjct: 317 IVRRLLRRVVRNGRLLGIKPEEGASAFTPAIAEVAISMSEGCDPQVAKNSARILAELERE 376 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 + F KTL RG +L ++ K + L+G AF LYDT+G PLDI D+ G+ + Sbjct: 377 ELSFQKTLGRGEEMLAELIETAKKTKTGLSGKDAFTLYDTYGFPLDITADVATEAGIT-V 435 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D+ F A+ EQRS ++A + + E + FIGY Sbjct: 436 DLEGFESAMAEQRSMSQAAHQTVDVTAGNALARVADELGAKSTFIGY------------- 482 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + D++N V AIV GE VEEA G KV++V D TPFYAE+GGQ+GD G Sbjct: 483 ----ESTSSDVSN-----VLAIVCGGESVEEAPEGAKVDIVLDVTPFYAESGGQVGDNGV 533 Query: 534 A-IGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 DG L+++DVQK G I VH A V +G ++ + +D +RR+ NH+ATH Sbjct: 534 LHTADGATLEVSDVQKAGGGRIIVHTATVTKGSIKKGSQVTANVDENSRRRAKSNHTATH 593 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL +LG VSQ GS D LRFD K T A+L +E+ VN I+Q+ + Sbjct: 594 LLQSALKKVLGEDVSQAGSLCGFDRLRFDFNSPKAPTEAQLLEVENLVNGWISQSAALTA 653 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M A GA + G KY D VRVV V G+ S LCGGTHVS+T EI I+ Sbjct: 654 EEMPIAAAKDKGATMMFGEKYGDVVRVVDVP----GI-SMELCGGTHVSNTAEIGGFKIL 708 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SE+ I +GIRRIEA+ G L +D +K LAS L+V + GRV + E+ R Q Sbjct: 709 SEAGIASGIRRIEAVAGAGVVELLQQRDAVVKQLASALRVPPEEITGRVSSLQEDLRATQ 768 Query: 772 LIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 + + +L V ++ + + + VD LK + L ++ G + Sbjct: 769 KLAESLRGELAVAKAGALVSQAREVGEAKVLVARLDGVDPAALKVAAENLAAQLGDGAAI 828 Query: 827 LVG 829 ++G Sbjct: 829 VLG 831 >gi|309775356|ref|ZP_07670361.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53] gi|308916873|gb|EFP62608.1| alanine--tRNA ligase [Erysipelotrichaceae bacterium 3_1_53] Length = 875 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 341/914 (37%), Positives = 513/914 (56%), Gaps = 68/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL++F+ GH + P +SL+P NDPTL++ N+G+ K F G EKP + Sbjct: 7 SQIRQMFLDYFKSQGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKNNRIANA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT + Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSPEWIGFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY++VY +D +A+++W ++ + I++ T+DNFW + E GP GP SEIF+D+GE Sbjct: 123 EKLYVSVYTDDADAYRIWTEVCKVDPSHILK--TDDNFWEIGE-GPGGPDSEIFYDRGEA 179 Query: 183 I-PGGLPG----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234 P GL E +RYIE+WN+VF QF+ + +++E LP+ +IDTGMGLER+ Sbjct: 180 YDPQGLGERLFFEELENDRYIEVWNVVFSQFDCKPELDRKEYKELPQKNIDTGMGLERLV 239 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 ++Q N+D DLF +I A+EQ T ++Y + N + RVI DH+R+ +F +ADG L + Sbjct: 240 CLVQGGETNFDTDLFLPIIHATEQYTSLRYADAENKMAFRVIADHIRTVTFALADGALFS 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RR + +A+ L M L+P + M YP L + I +++ Sbjct: 300 NEGRGYVLRRVLRRGVRFAKKLNIQGAFMYKLVPVVYDIMKDYYPYLEEKLDYIARLVKA 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERF TL G LL V+ +++G AFKLYDT+G PL++ +I G + + Sbjct: 360 EEERFHATLADGEKLLLQVMEEKKDSHVIDGKTAFKLYDTYGFPLELTVEIAQESGYS-V 418 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F+ +++QR RARA S ++ I L E + FIGYD+ Sbjct: 419 DKDGFDAEMQQQRERARAAREAAESMGSQSI--DLMEFTRESTFIGYDVRH--------- 467 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S+ V A+ + G V+ A+S + +V+FD T FYAE+GGQ+GD+G Sbjct: 468 --------------TSATVIALFKDGVRVD-AISDEG-DVIFDTTVFYAESGGQVGDSGT 511 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 +G++ + + K + H ++ G LR + ++ L +D + R ++ NHS THLL Sbjct: 512 LRAEGVQAVVNNTTKAPHKQHLSHVVITEGELRVQDTVTLQVDERKRDIITSNHSCTHLL 571 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL ++G+H+ Q GS ++ + LRFD TH + + +LK IE VN I+ + V Sbjct: 572 QSALKQVVGTHIQQAGSFVSEEYLRFDFTHYEKVNEEQLKKIEQLVNQYISAHYTVSKVE 631 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M E+A SGA AL KY D VRVV++ G S CGG HV++T EI + I+SE Sbjct: 632 MPIEEAKKSGATALFDEKYGDVVRVVTM-----GDVSKEFCGGCHVNNTQEIGVCKIISE 686 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEEIWEEYR 768 SI +GIRRI A TG A +D L S+A+ LK+ + VV ++E + + Sbjct: 687 ESIGSGIRRITAKTGYDAYCEFAKEDATLHSIAADLKLKGISKVEEKVVQLLDEAAQLKK 746 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGII 825 +L + A L DL HK+ +N +I V D+K LK ++ ++ + ++ ++ Sbjct: 747 ELAALQASM-FALKANDL-VHKMQPLNNRQVLIERVDGADAKALKDIVSNIRSQKENCVV 804 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAV---DLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 L + ++ V V D L + + DL R A V+ GG GGGRP MAQSGG + Sbjct: 805 FLAAVKDDR---VTFVAGADALAVQSGIKCGDLVR-EAAVICGGKGGGRPDMAQSGGKDA 860 Query: 883 NKADQAIAGVASFL 896 +K ++A+ + + L Sbjct: 861 SKVEEALHLIKNML 874 >gi|322375479|ref|ZP_08049992.1| alanine--tRNA ligase [Streptococcus sp. C300] gi|321279742|gb|EFX56782.1| alanine--tRNA ligase [Streptococcus sp. C300] Length = 872 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 342/930 (36%), Positives = 507/930 (54%), Gaps = 92/930 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPADKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFI---LPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF R LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSDYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M + YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMENYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +TP Sbjct: 469 ----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + +TDVQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDAKGNVVATVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAIDT 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVDS 806 +VE + E+ R+LQ +A+ K + NV++ + H+ +++ +S D+ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHR-----YIASQVSVSDA 787 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866 L++ D ++K S +++LV +K ++ T+D+ +A +L + A ++ G Sbjct: 788 GALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNLVKELAPIV-DG 842 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGG+P MA +GG N K + + VA L Sbjct: 843 RGGGKPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|119961931|ref|YP_948021.1| alanyl-tRNA synthetase [Arthrobacter aurescens TC1] gi|119948790|gb|ABM07701.1| alanyl-tRNA synthetase [Arthrobacter aurescens TC1] Length = 918 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 342/929 (36%), Positives = 503/929 (54%), Gaps = 80/929 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I +++FF GH +PS+SL+ +DP+L+FT +GMVPF T +E+P Y T+VQK Sbjct: 32 ITKRWVDFFVNKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEPPYSRATSVQK 90 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 C+R G D++ VG+T RH TFF+M GNFSFG YFKE AI+ A++LLT D L Sbjct: 91 CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAFELLTTSVDDGGYGLP 146 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY+ED+EA +LW K +G+ A++I R+ DN+WS + GP GPCSEI++D+G Sbjct: 147 AERLWVTVYEEDDEAKELWLKNTGIPAERIQRMGKADNYWSTGQPGPAGPCSEIYYDRGP 206 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLERM 233 I GG P + E RYIEIWNLVFMQ++ +N + + LP+ +IDTG+G+ER+ Sbjct: 207 AYGIEGG-PLADE--TRYIEIWNLVFMQYQIENVRSKVDFDIVGELPQKNIDTGLGMERL 263 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284 A +LQ N Y+ D + +I + +++G +Y + V RV+ DH+RS+ Sbjct: 264 AMILQGVENMYETDQVRPVIDKAAELSGREYTSAESPEDPHHTDDVRMRVVGDHIRSALM 323 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LIADG+ P+NEGRGYVLRR++RRA+ RLLG + + LLPA M YP + Sbjct: 324 LIADGVAPSNEGRGYVLRRLIRRAVRAMRLLGVEKACLPDLLPASRDAMKGVYPVVETDF 383 Query: 345 LLIEETLRSEDERFGKTLDRGLVLL-DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 I +E++ F +T+ G L D V L+G AF L+DT+G P+D+ + Sbjct: 384 ARISRIAYAEEKAFLRTIASGTARLEDAVAESKAAGVPLSGADAFALHDTYGFPIDLTLE 443 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + GL +D F + EQR RA+A + G G + + G T F GYD L Sbjct: 444 MAEEAGLQ-VDEAGFRALMLEQRQRAQADAKGKKGGHADLSAYQELLGKGETVFTGYDEL 502 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 G + V+ IV G V A +G ++E+V ++TPFYAE Sbjct: 503 EG-----------------------EAKVRGIVSGGRAVAHASTGDEIELVLNETPFYAE 539 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 AGGQ DTG GDG +++ DVQ+ +G+ VH AIV G + ++ + +D + R Sbjct: 540 AGGQSADTGLITGDGFVVEVLDVQRPIKGLSVHKAIVREGEIGSDALVRAAVDRERRHAA 599 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 H+ TH++H AL ILG +Q GS LRFD + +++A IE+ N I Sbjct: 600 EQAHTGTHIVHAALHQILGPEATQRGSYNKAGYLRFDFAWGEGLSTATRSEIEEVSNIAI 659 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N V T++M +A A GA AL G Y VRVV ++ G S LCGGTHVS+T Sbjct: 660 RNNFRVDTKVMGLAEAKALGAMALFGENYGSEVRVVEID----GAWSRELCGGTHVSNTS 715 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV--- 760 I L ++ E S+ +G RR+EA G A HL + + L LKV G + R+ Sbjct: 716 LIGSLSLLGEQSVGSGNRRVEAFVGLDAFRHLAAERALVSELTELLKVPSGQLADRISST 775 Query: 761 -------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSV 812 E+ + RK QL A L +D A V ++H +V + +L+++ Sbjct: 776 LNKLKATEKELDRLRKEQLAAAAANLVGTAKD-----AAGVRVVAHDAGQVGGADDLRNL 830 Query: 813 MDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 L+ ++ ++ + + G+S ++ +LI E + A L RL+A +L GGGGG Sbjct: 831 ALDLRNRLGSEASTVAVAGVSNDRPV-ILIATNEAAREAGVKAGALVRLAAGIL-GGGGG 888 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 G+ +AQ GG + K +A+ V + K Sbjct: 889 GKDDVAQGGGTDAGKVSEALTAVVDAIAK 917 >gi|149196141|ref|ZP_01873197.1| alanyl-tRNA synthetase [Lentisphaera araneosa HTCC2155] gi|149140988|gb|EDM29385.1| alanyl-tRNA synthetase [Lentisphaera araneosa HTCC2155] Length = 899 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 347/931 (37%), Positives = 501/931 (53%), Gaps = 104/931 (11%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++ +FF+ H L+ S+SL+P + P L+FTN+GM F IF G++K Y Sbjct: 1 MLSSKEIRQSYFDFFKSKQHTLVSSASLMP-DSPNLLFTNAGMNQFVPIFLGEKKCPYTP 59 Query: 61 --VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+RAGGKHNDL++VG HHTFFEMLGN+SF YFK+ AI+ AW+ LTK Sbjct: 60 GRATDTQKCIRAGGKHNDLEDVGMDTYHHTFFEMLGNWSFNDYFKKEAIEYAWEYLTKVC 119 Query: 119 DLDQRRLYITVY----------DEDEEAFKLWKKI---SGLSAD-KIIRITTNDNFWSMA 164 + + RLY TVY D D+EA+ +W I GL I+ DNFW M Sbjct: 120 KIPKERLYATVYQPDKSSGDPADFDQEAYDIWADIFKADGLDPKVHIVNGDKKDNFWMMG 179 Query: 165 ETGPCGPCSEIFFDQGECIPGG-LPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221 ETGPCGPC+E+ D P G GS + + ++ IEIWNLVF+Q LP Sbjct: 180 ETGPCGPCTELHID---LTPAGDTKGSLVNMDTDKCIEIWNLVFIQMNANPDGTFSDLPT 236 Query: 222 MSIDTGMGLERMATVLQEKTN---------NYDIDLFKHLIQASEQVTGMKY-----EGN 267 ++DTGMG ER+A+++ N NY+ D+F + ++G KY E N Sbjct: 237 KNVDTGMGFERLASIILNTKNFTDFNGIISNYETDIFTPIFDKLTDISGKKYTSTLPEKN 296 Query: 268 NI-------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL 314 + + RVI DH+R+ SF IADGI P N R YVLRRI+RRA+ Y R Sbjct: 297 ELGYFVAANDQEMVDIAFRVIADHIRTLSFSIADGIQPGNGDRNYVLRRILRRAVRYGRT 356 Query: 315 LGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS 374 +G +P L+ L +MG +PEL + + ++ ++SE+E F +TLDRG+ L + +S Sbjct: 357 IGLEKPFFYELVDTLADQMGEIFPELAKGRQHVKTVIKSEEEAFNRTLDRGINLFESEIS 416 Query: 375 HLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434 L K + ++ AF+L D G PLD+ + + +G +D+ F + + EQR RARA Sbjct: 417 KLKKGDSISAAFAFRLADEQGFPLDLTELMAREQGYK-VDVDGFEKLMNEQRDRARA--- 472 Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ-KPPIDLTNGVSSIVK 493 + E I S + T+FIGY+ ED Q K I + NG++ Sbjct: 473 ---AQKKEIISLSEIKTTEPTEFIGYE---------EDNSNEAQVKEVIKMKNGLA---- 516 Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553 V+FD + Y E GGQ+GD+G G QI D QK + Sbjct: 517 -------------------VIFDSSVCYPEMGGQVGDSGTIAAGGKLYQIKDTQKNGDAT 557 Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613 +H+ + + E ++++ D + R ++ NH+ATHLLH AL +LG HV Q GS + Sbjct: 558 -LHYLVGDEAPEEGE-KVIVSYDIERRDKIRKNHTATHLLHKALQDLLGEHVEQKGSLVA 615 Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673 D LRFD +H + + + E++ +E +N+ + N V T + N ++A A GA AL G KY+ Sbjct: 616 ADYLRFDFSHHQGLKADEIEKLELLINEKVILNSAVETHLKNIDEAKAMGAMALFGEKYD 675 Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 D VRVV ++ S LCGGTHV TG+I L I SE S+ AGIRRIEAITG A Sbjct: 676 DDVRVVKID-----DFSLELCGGTHVKRTGDIGLFKITSEGSVSAGIRRIEAITGMDAVK 730 Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKI 791 + + ++ L+ LA LK + RV+++ + LQ L AK KL D K Sbjct: 731 YALNSNKVLQGLAGDLKCKVDTIPERVDKLSSNAKSLQKELDEAKSKLVALEADSLLEKA 790 Query: 792 ADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849 ++N + ++ +V D+ LK + +L+KKI SGI++ S K + V++DL + Sbjct: 791 EEINGIKVLMLKVDNDAATLKDMTHSLRKKIGSGIVVFAS-SANGKVVLTSGVSDDLTKQ 849 Query: 850 -FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 F A ++ ++AK +GGGGGG P AQ+GG Sbjct: 850 GFKAGEIVSIAAKQVGGGGGGA-PTFAQAGG 879 >gi|205830052|sp|A1R709|SYA_ARTAT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 892 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 342/929 (36%), Positives = 503/929 (54%), Gaps = 80/929 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I +++FF GH +PS+SL+ +DP+L+FT +GMVPF T +E+P Y T+VQK Sbjct: 6 ITKRWVDFFVNKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEPPYSRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 C+R G D++ VG+T RH TFF+M GNFSFG YFKE AI+ A++LLT D L Sbjct: 65 CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAFELLTTSVDDGGYGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY+ED+EA +LW K +G+ A++I R+ DN+WS + GP GPCSEI++D+G Sbjct: 121 AERLWVTVYEEDDEAKELWLKNTGIPAERIQRMGKADNYWSTGQPGPAGPCSEIYYDRGP 180 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLERM 233 I GG P + E RYIEIWNLVFMQ++ +N + + LP+ +IDTG+G+ER+ Sbjct: 181 AYGIEGG-PLADE--TRYIEIWNLVFMQYQIENVRSKVDFDIVGELPQKNIDTGLGMERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284 A +LQ N Y+ D + +I + +++G +Y + V RV+ DH+RS+ Sbjct: 238 AMILQGVENMYETDQVRPVIDKAAELSGREYTSAESPEDPHHTDDVRMRVVGDHIRSALM 297 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LIADG+ P+NEGRGYVLRR++RRA+ RLLG + + LLPA M YP + Sbjct: 298 LIADGVAPSNEGRGYVLRRLIRRAVRAMRLLGVEKACLPDLLPASRDAMKGVYPVVETDF 357 Query: 345 LLIEETLRSEDERFGKTLDRGLVLL-DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 I +E++ F +T+ G L D V L+G AF L+DT+G P+D+ + Sbjct: 358 ARISRIAYAEEKAFLRTIASGTARLEDAVAESKAAGVPLSGADAFALHDTYGFPIDLTLE 417 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + GL +D F + EQR RA+A + G G + + G T F GYD L Sbjct: 418 MAEEAGLQ-VDEAGFRALMLEQRQRAQADAKGKKGGHADLSAYQELLGKGETVFTGYDEL 476 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 G + V+ IV G V A +G ++E+V ++TPFYAE Sbjct: 477 EG-----------------------EAKVRGIVSGGRAVAHASTGDEIELVLNETPFYAE 513 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 AGGQ DTG GDG +++ DVQ+ +G+ VH AIV G + ++ + +D + R Sbjct: 514 AGGQSADTGLITGDGFVVEVLDVQRPIKGLSVHKAIVREGEIGSDALVRAAVDRERRHAA 573 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 H+ TH++H AL ILG +Q GS LRFD + +++A IE+ N I Sbjct: 574 EQAHTGTHIVHAALHQILGPEATQRGSYNKAGYLRFDFAWGEGLSTATRSEIEEVSNIAI 633 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N V T++M +A A GA AL G Y VRVV ++ G S LCGGTHVS+T Sbjct: 634 RNNFRVDTKVMGLAEAKALGAMALFGENYGSEVRVVEID----GAWSRELCGGTHVSNTS 689 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV--- 760 I L ++ E S+ +G RR+EA G A HL + + L LKV G + R+ Sbjct: 690 LIGSLSLLGEQSVGSGNRRVEAFVGLDAFRHLAAERALVSELTELLKVPSGQLADRISST 749 Query: 761 -------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELKSV 812 E+ + RK QL A L +D A V ++H +V + +L+++ Sbjct: 750 LNKLKATEKELDRLRKEQLAAAAANLVGTAKD-----AAGVRVVAHDAGQVGGADDLRNL 804 Query: 813 MDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 L+ ++ ++ + + G+S ++ +LI E + A L RL+A +L GGGGG Sbjct: 805 ALDLRNRLGSEASTVAVAGVSNDRPV-ILIATNEAAREAGVKAGALVRLAAGIL-GGGGG 862 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 G+ +AQ GG + K +A+ V + K Sbjct: 863 GKDDVAQGGGTDAGKVSEALTAVVDAIAK 891 >gi|257439376|ref|ZP_05615131.1| alanine--tRNA ligase [Faecalibacterium prausnitzii A2-165] gi|257198251|gb|EEU96535.1| alanine--tRNA ligase [Faecalibacterium prausnitzii A2-165] Length = 886 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 347/920 (37%), Positives = 519/920 (56%), Gaps = 63/920 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R +L FF+ GH L S L+P NDP+L+ NSGM P K F QE+P V Sbjct: 4 TGLNELREKYLSFFESKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119 TT QKC+R D++ VG T RH TFFEMLGNFSF YFKE I AW+ LT + Sbjct: 64 TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTSDEWMA 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + + +L+I+VY+ED+EA+ +W K G++ D ++R+ DNFW +GPCGPCSEI+FD+ Sbjct: 120 IPKDKLHISVYEEDDEAYDIWTKKVGIAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDR 178 Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G G P G + +RY+EIWNLVF QF+ K L + +IDTGMGLER+A V+ Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N +++D + ++ E + G Y N + ++ RVI DH+RS +F+++DGILP+NE Sbjct: 239 QGVGNLFEVDTVQSVLHHVEHIAGKTYGENAKDDISIRVITDHIRSCTFMVSDGILPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + R+LG + P ++ L+ + SAYPEL + I++ + +E+ Sbjct: 299 GRGYVLRRLLRRAARHGRMLGISRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F +T+D G+ +L+ ++ L K +L G FKL DT G PLD+ ++I +G+ I Sbjct: 359 ANFARTIDAGMNILNNMIDGLEKAHQHLLKGLDVFKLNDTFGFPLDLTKEIAAEQGIE-I 417 Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F+ +++Q+ RARA L SG +E ++ L + T F GY+ L + Sbjct: 418 DEDGFHAEMKKQKERARAERLKKNISGWSEDLFGGLTVE--PTVFTGYETLNDTGV---- 471 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V+ LT+ +++ EEA G V VV D+TPFYAE GGQ+ D G Sbjct: 472 --VVALSDEETLTDAIATD-----------EEAKDG--VLVVLDKTPFYAEMGGQVADNG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G L++ DV+K +G +VH ++E GI++ L +D + R + NH+ATHL Sbjct: 517 LLTGPECSLRVLDVKKTPKGYYVHTCVLESGIVKVGDHLNAQVDKEYRMSVCRNHTATHL 576 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG HV Q GS + FD TH +T EL ++ VND I +++ V + Sbjct: 577 LQAALREVLGDHVHQAGSYQDAEITHFDFTHFSAVTPEELARVQKIVNDKIYESMNVTVK 636 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E+A GA AL G KY VRVV++E S+ CGGTHV +T +I IVS Sbjct: 637 EMPIEEAKKLGAMALFGEKYGKVVRVVNIEG-----WSTEFCGGTHVKNTAQIGGFKIVS 691 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE----Y 767 ESS+ AGIRRIEA+TG+ Q+ L ++A+ LK + ++ R E + E Sbjct: 692 ESSVAAGIRRIEAVTGRNLLVRANLQEAMLHTVANTLKANNITSLPIRAEAVMAENKAMS 751 Query: 768 RKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 ++L+ I AK L N E++S KIA F L+ + D+++ K Sbjct: 752 KELEEIKAKVAASKVNSLFDNAEEVSGVKIASAYFTG-----TTGDTLRGMCDSIRDKAV 806 Query: 822 SGII-MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSG 878 + ++ +LVG +++K V + VT + L + + L ++ + GG GGG+P A +G Sbjct: 807 NPVVAVLVGKAEDK---VTMAVTVNKLAQEKGLKAGVLVKEISAIAGGKGGGKPDFAMAG 863 Query: 879 GPNGNKADQAIAGVASFLKK 898 + K D+A+A V ++K Sbjct: 864 LKDETKIDEALAAVKGIVEK 883 >gi|148240734|ref|YP_001226121.1| alanyl-tRNA synthetase [Synechococcus sp. WH 7803] gi|205830237|sp|A5GPF9|SYA_SYNPW RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|147849273|emb|CAK24824.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 7803] Length = 891 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 344/903 (38%), Positives = 511/903 (56%), Gaps = 72/903 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF++ GH+ +PS+SL+P DPT++ T +GM+PFK IF GQ++ T+ Sbjct: 18 AEIRDAFLAFFEERGHKRMPSASLVP-EDPTVLLTIAGMLPFKPIFLGQQERPAPCATSS 76 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T F LD + Sbjct: 77 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTGVFGLDPKN 132 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ +D+EA ++W+++ G++ +IIR+ DNFW+ TGPCGPCSEI++D + Sbjct: 133 LVVSVFRDDDEAEQIWREVVGVNPKRIIRMDEEDNFWASGPTGPCGPCSEIYYDFKPEL- 191 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ +R+IE +NLVFMQ + + L +IDTGMGLERMA +LQ+ NNY Sbjct: 192 GDDGIDLEDDDRFIEFYNLVFMQSNRDAEGTLTPLANRNIDTGMGLERMAQILQKVPNNY 251 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL LIQA+ + G+ Y + + +VI DH R+ + LI+DG+ +N GRGY+L Sbjct: 252 ETDLIFPLIQAAAERAGVDYHQLDEKGKTSLKVIGDHSRAVTQLISDGVTASNLGRGYIL 311 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG +P + + A M SA+P+L + + +I L+ E+ RF +T Sbjct: 312 RRLLRRVVRHGRLLGIDKPFLQAMGEASIALMQSAHPQLSERREVILAELQREEARFLET 371 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL VL+ K + ++G+ AF+LYDT+G PL++ Q+I GLA +D+ F A Sbjct: 372 LERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTQEIAEEHGLA-VDLAGFETA 428 Query: 422 LEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +E+QR RA+A ++ + +++ L++ T+F GY+ L Sbjct: 429 MEQQRQRAKAAAVSIDLTLQDAIDQVAAGLQD----TEFRGYEQLE-------------- 470 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI--- 535 SS ++A+V GE + AV+G V+VV D TPFY E GGQ+GD G + Sbjct: 471 ---------QSSSIQALVVNGEPAQSAVAGDAVQVVLDVTPFYGEGGGQIGDRGTLVADG 521 Query: 536 --GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 GDG+ + + V + +FVH V+RG L + +D RR+ NH+ATHLL Sbjct: 522 QAGDGLIVMVESVSRN-RSVFVHSGRVQRGALAVGDVVHGRVDRACRRRAQANHTATHLL 580 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL + + Q GS ++ D LRFD + +T+ EL+ IE +N IA + + Sbjct: 581 QAALKQEVDPGIGQAGSLVSFDRLRFDFHCPRAVTAEELERIESLINGWIADAHALEVQE 640 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M E A A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IVSE Sbjct: 641 MAIEKAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVSE 695 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KL 770 S + AGIRRIEA+ G +L +D +K L K G ++ RV + +E + K Sbjct: 696 SGVAAGIRRIEAVAGAAVLPYLNERDAVVKQLGERFKAQPGEIIERVTALQDELKATGKA 755 Query: 771 QLIHAKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSG-IIML 827 L+ +A D + + VD L+ +L ++ G ++L Sbjct: 756 LAAAQAELAVAKSAALATKAVAVGDFQLLVERLDGVDGTGLQGAAQSLADQLGDGAAVVL 815 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLA--RLSAKVLGG------GGGGGRPHMAQSGG 879 G+ +I+V F +A + + K +GG GGGGGRP++AQ+GG Sbjct: 816 GGLPDPADQGKVILVAA-----FGKAVIAQGQQAGKFIGGIAKLCGGGGGGRPNLAQAGG 870 Query: 880 PNG 882 +G Sbjct: 871 RDG 873 >gi|209523613|ref|ZP_03272167.1| alanyl-tRNA synthetase [Arthrospira maxima CS-328] gi|209496018|gb|EDZ96319.1| alanyl-tRNA synthetase [Arthrospira maxima CS-328] Length = 876 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 349/905 (38%), Positives = 507/905 (56%), Gaps = 57/905 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL F+ + H+++PS+SL+P DPT++ T +GM+ FK IF GQ TT Sbjct: 11 SEIRQKFLNFYAERQHKIMPSASLVP-EDPTVLLTIAGMLQFKPIFLGQRPREVNRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F L R Sbjct: 70 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPPER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V++ED+EAF +W+ G+ +I R+ DNFW TGPCGPCSEI++D Sbjct: 126 LIVSVFEEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYD-FHPEK 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ NNY Sbjct: 185 GDDNIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + + G+ Y + V+ +VI DHLR+ LIADG+ +N GRGY+L Sbjct: 245 ETDLIFPIIKTAADLAGIDYAKSDDKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGYIL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G T + YP + + +I+ L+ E+ RF +T Sbjct: 305 RRLIRRVVRHGRLIGITGEFTTKVAETAIGLSEDVYPNTRERERVIKGELQREESRFLET 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL +L+ + + ++G AF LYDT+G PL++ Q+I GL +D+ F Sbjct: 365 LERGEKLLAELLAK--QPDQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVDGFEAE 421 Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + QR R++A ++ L T + L E+ T F+GYD Sbjct: 422 MSAQRKRSQAAHETIDL---TVQGSLDKLAEQIHPTTFLGYDF----------------- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 P + T V+A++ G+ V EAV+G +V++V DQTPFY E+GGQ+GD G + Sbjct: 462 PDSEAT------VEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++ DV+K ++ IF+H VERG L +++ ID RR+ NH+ATHLL AL Sbjct: 516 IVRVDDVKKDSD-IFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T+ EL+ +E+ VN IA+ P M E+A Sbjct: 575 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY VRVV GV S LCGGTHV++T EI L IVSE+ I AG Sbjct: 635 KNKGAIAMFGEKYAAVVRVVDYP----GV-SMELCGGTHVTNTAEIGLFKIVSETGIAAG 689 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777 IRRIEA+ GQ +L +D +K L LK + R + E + + QL K Sbjct: 690 IRRIEAVAGQSVLDYLNVRDAVVKELGDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 749 Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + D + ++ D+ + + VD + LK+ + LQ+K+ ++L +S K Sbjct: 750 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVSDGK 809 Query: 835 ---KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 A+ VV +D + A AK L GGGGGGRP++AQ+GG + +K +A++ Sbjct: 810 VSLVAAFSPVVVKD--KKLQAGKFIGAIAK-LCGGGGGGRPNLAQAGGRDPSKLPEALST 866 Query: 892 VASFL 896 S L Sbjct: 867 AKSQL 871 >gi|238855615|ref|ZP_04645916.1| alanine--tRNA ligase [Lactobacillus jensenii 269-3] gi|260665325|ref|ZP_05866173.1| alanyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US] gi|282933011|ref|ZP_06338405.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1] gi|313473100|ref|ZP_07813584.1| alanine--tRNA ligase [Lactobacillus jensenii 1153] gi|238831759|gb|EEQ24095.1| alanine--tRNA ligase [Lactobacillus jensenii 269-3] gi|239528663|gb|EEQ67664.1| alanine--tRNA ligase [Lactobacillus jensenii 1153] gi|260560829|gb|EEX26805.1| alanyl-tRNA synthetase [Lactobacillus jensenii SJ-7A-US] gi|281302865|gb|EFA95073.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1] Length = 878 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 341/927 (36%), Positives = 524/927 (56%), Gaps = 88/927 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S R +L+FF+++GH +LPS SLIP +DPTL++ NSG+ K F G P + +T+ Sbjct: 7 SEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K LD+ Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY TVY +D ++ ++W+K +G+ D II++ DNFW + E GPCGP +EIF+D+G Sbjct: 123 DKLYCTVYPKDVDSQRVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ E P +IDTGMGLER+ + Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERVLS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 +LQ+ N++ DLF +I +E+++ G KY N + V ++I DH+R+ SF I DG LP Sbjct: 237 ILQDAPTNFETDLFMPMIHETEKMSAGKKYATNKEDDVAFKIIADHVRAVSFAIGDGALP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+P + M S YPE+++ I++ ++ Sbjct: 297 SNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKVMESHYPEVLKQAPFIQKVIK 356 Query: 353 SEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RFG TL+ GL LLD ++ + D+ ++G AFKL+DT+G P ++ + +GL Sbjct: 357 NEEDRFGATLESGLTLLDDLIEKASANDDKTISGKDAFKLFDTYGFPYELTFEAAQDKGL 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F++ +E Q+ RAR + G Q +G + Sbjct: 417 K-VDKAGFDKEMEAQKERAR-------------------KARGDLQSMG----------R 446 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 +D ++ K + GV A IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 447 QDETLMNIKDKSEFEYGVYEEKHAKLIDIVVNDKLVDKA-DGESATLIFDKTPFYAERGG 505 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL--------VLTIDYQ 578 Q+ D G I Q D+ K I V HA ++ + ++ L VL ID Sbjct: 506 QVADHG-----DIYDQDGDLVAKV--IDVQHAPNDQNLHFVDLVLPMEKGKEYVLKIDAH 558 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R L +H+ATHL+H AL +LG H Q GS + PD LRFD T P+T E++++E Sbjct: 559 RREGLRHSHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERL 618 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 VN I +N+ V T I + E GA AL KY D+VRVV V S CGGTH Sbjct: 619 VNQKIWENIEVKTTITDPETGKKMGALALFNGKYGDKVRVVQV-----NDFSIEFCGGTH 673 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVV 757 ++T +I + I+SE +I AGIRRIEA+T ++A +L +D L+ + +K ++ ++ Sbjct: 674 CANTAQIGIFKIISEQAIGAGIRRIEAVTSEKAYEYLANRDALLEEIKKEVKATKAEDIK 733 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHI--ISEVDS-KELKSV 812 ++ + EE Q ++ + ++N S + +VN + I I+ V+ +L+ + Sbjct: 734 TKITSLEEELHASQKKASELESEINAAKASDIFENVQEVNGLKVIAAIANVNGMNDLREL 793 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 D + +S +++L + + KA+++I +T+ LD+ A +L +++A + GGGGGGR Sbjct: 794 ADNWKSSNKSDVLVL-ACANDGKANMVISLTDAALDKGLKAGNLIKVAAPIF-GGGGGGR 851 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P+MAQ+GG N AIA V + + K Sbjct: 852 PNMAQAGGKNPAGLKDAIAAVINEINK 878 >gi|256832583|ref|YP_003161310.1| alanyl-tRNA synthetase [Jonesia denitrificans DSM 20603] gi|256686114|gb|ACV09007.1| alanyl-tRNA synthetase [Jonesia denitrificans DSM 20603] Length = 895 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 342/918 (37%), Positives = 513/918 (55%), Gaps = 64/918 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF+ H ++PS+SLI DP+++FT +GMVPF G++K + T+V Sbjct: 4 AEIRHRWLQFFESRDHHVVPSASLI-SPDPSVLFTIAGMVPFIPYMLGEQKAPWPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKC+R G D+D VG+T RH TFF+M GNFSFG YFK AI AW+ +T Sbjct: 63 QKCIRTG----DIDEVGKTTRHGTFFQMNGNFSFGDYFKREAITFAWEFITGSEESGCLG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +++TVY +D+EA LW+ ++GL ++I R DNFW + GP GPCSEI+ D+ Sbjct: 119 FDPELIWVTVYHDDDEAASLWRDVAGLPEERIQRRGKKDNFWHTGQPGPGGPCSEIYVDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERF----ILPKMSIDTGMGLERM 233 G G G + +RY+EIWNLVFMQ+ +N +E F L + +IDTGMGLER+ Sbjct: 179 GPQY-GAEGGPVVDEDRYLEIWNLVFMQYSLENVTSKESFDIVGPLRQHNIDTGMGLERV 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A + Q N Y+ID +I+A+E+++G Y NN V RV+ DH+RSS LI DG+ Sbjct: 238 ALLKQGVNNMYEIDEVYPVIEAAEKLSGRTYGENNDDDVRFRVVADHIRSSLMLIGDGVR 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RR++ RLLG TEP + L+ A M ++YP L + I T Sbjct: 298 PSNEGRGYVLRRLLRRSIRAMRLLGVTEPAIPALITASKEAMKASYPYLEENFATILATA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +E++ F +TL++GL +LD +S G L G+ AF L+DT+G P+D+ ++ Sbjct: 358 STEEDVFRRTLNQGLTILDAAVSDAKSQGGSSAALTGEQAFTLHDTYGFPIDLTLEVAAE 417 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGYDLLRG 465 +G++ +D +F ++EQR RARA +L G + ++ SL A +F+GY Sbjct: 418 QGVS-VDETAFRSLMQEQRDRARADALAKKQGHGDLGVYQSLLASMAAPVEFLGY----- 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 Q P + V A++ G+ V + VE+V D+TPFYAE G Sbjct: 472 ---------TDAQAP---------AKVTALLVDGQPVATVTAPADVEIVLDRTPFYAEKG 513 Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G + G + I DVQ G+ VH + G L ++V ID RRQ+S Sbjct: 514 GQLADHGRVYSEQGATVDIADVQSPVSGLSVHRGALVDGTLSVSDAVVAEIDVVRRRQIS 573 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 H+ATH++H AL LG+ +Q GS +P+ +RFD S+ + ++ L IE VND + Sbjct: 574 QAHTATHMIHKALQETLGADSTQAGSENSPNRIRFDFRQSQAVPTSALAEIEGRVNDQLR 633 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +NL V + + +DA A GA AL G KY DRVRVVS+ GG S LC GTHV ++GE Sbjct: 634 ENLEVTDIVTSLDDARAMGAMALFGEKYGDRVRVVSI----GGDWSRELCAGTHVPTSGE 689 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + ++ I+ E+SI +G+RR++A+ G A H + + L+ L V + RVE + Sbjct: 690 LGIVTILGEASIGSGVRRVDALVGAGAYGHHARERALVSQLSGLLNVRSEELPTRVESLV 749 Query: 765 EEYRKLQL-IHAKRKLQLNVE----DLSCHKIADVNFMSHIISEVDSKE-LKSVMDALQK 818 + R + + R+ QL S + V +++ EV + + L++++ ++ Sbjct: 750 GKLRDAEKELTTLRQAQLLARAGEIASSAATVGAVRVVTYDAGEVATPDALRTLVLDVRG 809 Query: 819 KI---QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ Q ++ + G+SK + V+ A L R +A VL GGGGGG+ +A Sbjct: 810 RLGDSQGSVVAVAGVSKGRPVVVIATNASAREAGVKAGALVRTAAGVL-GGGGGGKDDLA 868 Query: 876 QSGGPNGNKADQAIAGVA 893 Q GG N +A+A V+ Sbjct: 869 QGGGQNPTAITEALAAVS 886 >gi|330466938|ref|YP_004404681.1| alanyl-tRNA synthetase [Verrucosispora maris AB-18-032] gi|328809909|gb|AEB44081.1| alanyl-tRNA synthetase [Verrucosispora maris AB-18-032] Length = 892 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 339/912 (37%), Positives = 501/912 (54%), Gaps = 76/912 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I+ +L F+ NGH ++PS+ L +DP L+F N+GMV F F GQ+ P + Sbjct: 2 KTAEIKRRYLAHFEANGHAVVPSAPLPAISDPNLLFVNAGMVQFVPYFLGQQSPPFPRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKC+R D+D VG+T+RH TFF+M GNFSFG YFK+ AI AWDL TK Sbjct: 62 SVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKDGAIPFAWDLATKSVEAGG 117 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F LD R++ TVY +D+EA+ +W +G+ A++I+R DNFWSM GP GPCSE+++ Sbjct: 118 FGLDPERIWATVYLDDDEAYDIWLH-TGVPAERIVRRGKKDNFWSMGIPGPAGPCSELYY 176 Query: 178 DQGECIPGGLPGSSEEGE-RYIEIWNLVFMQFE---QQNKQERFI---LPKMSIDTGMGL 230 D+G GL G E E RY+E WNLVFMQ+E ++K+E I LPK +IDTGMGL Sbjct: 177 DRGPEY--GLEGGPEVDEDRYLEFWNLVFMQYEIADVRSKEEFRIVGELPKKNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLR 280 ERMA++LQ N Y+ID + +++ + ++TG +Y + V RV+ DH+R Sbjct: 235 ERMASILQGVDNLYEIDEVRPILERAAELTGKRYGAQSGQAANQSHPDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 ++ LI DG+ P+NEGRGYVLRRIMRRA+ RLLG+ E + LLP M +YPEL Sbjct: 295 TALMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGWQERALPELLPVARDCMAPSYPEL 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLP 397 I +E++ F TL G +LD ++ GK L+GD AF+L+DT+G P Sbjct: 355 ATDFDRISAYAYAEEDAFLATLRAGTTILDTAITETKSAGK-PALSGDKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQ 456 +D+ +I +GL +D F + + +QR+RA+A + +G T+ + S+ + G Sbjct: 414 IDLTLEIAAEQGL-DVDQEGFRRLMADQRARAKADAQARKTGHTDLSAYRSVLDAGGPVT 472 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 F GY ++ +E S V+A++ AV G VE+V D Sbjct: 473 FTGY-----TETARE------------------STVRAVLGTDGPRAAAVEGDMVELVLD 509 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 TPFYAE GGQ D G G ++++ DVQ+ G+ VH A V RG +R + ID Sbjct: 510 TTPFYAEGGGQQPDLGMITVGGGQVEVLDVQQPVPGLIVHRARVIRGEVRAGETGYAEID 569 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 RR +S +H+ATHL+H + LG +Q GS P LRFD + + + L+ +E Sbjct: 570 TSRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFDFNTATGVAPSVLRDVE 629 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+++ +L V + + ++A GA AL G KY D+VRVV V G ++ LCGG Sbjct: 630 QQVNEVLLADLEVHAFVTSLDEARRIGAMALFGEKYGDQVRVVEV-----GDYARELCGG 684 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THVS +G++ L+ I+SESSI +G+RR+EA+ G A + L + + LA +V V Sbjct: 685 THVSRSGQLGLVKILSESSIGSGVRRVEALVGMDAFNFLAREHLLVSRLAELYRVPSEQV 744 Query: 757 VGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814 RVE+ + R + +L + +L L + DV ++++ E + + Sbjct: 745 ADRVEQTVTQLRDAEKELEKLRAQLVLGGAAAFAAQAKDVRGVAYVGIEAPEGAAGNDVR 804 Query: 815 ALQKKIQSGI------IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867 L ++I+ I ++ V KAS+++ V R A DL + + G Sbjct: 805 TLAQEIRGRIDAARPGVVAVASRSNGKASLVVSVNPAARSRGLAANDLVKAAFS----GR 860 Query: 868 GGGRPHMAQSGG 879 GGG P +AQ GG Sbjct: 861 GGGSPDLAQGGG 872 >gi|313897393|ref|ZP_07830936.1| alanine--tRNA ligase [Clostridium sp. HGF2] gi|312957763|gb|EFR39388.1| alanine--tRNA ligase [Clostridium sp. HGF2] Length = 875 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 339/914 (37%), Positives = 511/914 (55%), Gaps = 68/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL++F+ GH + P +SL+P NDPTL++ N+G+ K F G EKP + Sbjct: 7 SQIRQMFLDYFKSQGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKNNRIANA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K + Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAISFAWEFLTSPKWIGFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY++VY +D +A+++W ++ + I++ T+DNFW + E GP GP SEIF+D+GE Sbjct: 123 EKLYVSVYTDDADAYRIWTEVCKVDPSHILK--TDDNFWEIGE-GPGGPDSEIFYDRGEA 179 Query: 183 I-PGGLPG----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234 P GL E +RYIE+WN+VF QF+ + ++++ LP+ +IDTGMGLER+ Sbjct: 180 YDPEGLGERLFFEELENDRYIEVWNVVFSQFDCKPELDRKDYKELPQKNIDTGMGLERLV 239 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 ++Q N+D DLF +I A+E T +Y + + + RVI DH+R+ SF +ADG L + Sbjct: 240 ALVQGGETNFDTDLFLPIIHATEAYTDARYADAQHKMAFRVIADHIRTVSFALADGALFS 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ +A+ L M L+P + M YP + + I +++ Sbjct: 300 NEGRGYVLRRVLRRAVRFAKKLNIQGAFMYKLVPVVYDIMKDFYPYMEEKLDYIARLVKA 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERF TL G LL V+ + +++G AFKLYDT+G PL++ +I G + Sbjct: 360 EEERFHATLADGERLLLQVMEEKKESRVIDGKTAFKLYDTYGFPLELTVEIAEESGYT-V 418 Query: 414 DIISFNQALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 D F+ +++QR RARA + +GS + + + F+ + + FIGYD+ Sbjct: 419 DKDGFDAEMQQQRERARAARGDAESMGSQSIDLMEFTQE-----SSFIGYDVRH------ 467 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 S+ V A+ Q G V+ A+S + +VVFD T FYAE+GGQ+GD Sbjct: 468 -----------------TSAKVIALFQDGVKVD-AISDEG-DVVFDTTVFYAESGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 +G +G++ + K + H I++ G LR ++ L +D + R ++ NHS T Sbjct: 509 SGTICAEGVQAVVDTTIKAPHKQHLSHVIIKEGELRVGDAVELQVDEKKRDIITSNHSCT 568 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL I+GSH+ Q GS ++ + LRFD TH + + +LK IE VN I + V Sbjct: 569 HLLQSALKQIVGSHIQQAGSFVSEEYLRFDFTHFEKVNEEQLKEIERLVNRYIGGHYAVS 628 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M E+A SGA AL KY D VRVVS+ G S CGG HV++T EI + I Sbjct: 629 KVEMPIEEAKKSGATALFDEKYGDVVRVVSM-----GDVSKEFCGGCHVNNTQEIGVCKI 683 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEEIWE 765 +SE SI +GIRRI A TG A + +D+ L ++AS LK+ + V +EE + Sbjct: 684 ISEESIGSGIRRITAKTGYDAYAEFAKEDDTLHAVASDLKLKGISKVEEKVASVLEENVQ 743 Query: 766 EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822 ++L + A L DL H + ++N +I + D+K +K ++ ++ + ++ Sbjct: 744 LKKELAALQASM-FALKASDLVNH-MQELNGRQVLIERMDGADAKAMKDIVSNIRSQREN 801 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 ++ L + +K V + DL R +A V G GGGRP MAQSGG + Sbjct: 802 CVVFLASVHGDKVTFVAGADKAAVSGGIKCGDLVREAALVC-DGKGGGRPDMAQSGGKDA 860 Query: 883 NKADQAIAGVASFL 896 +K ++A+ + + L Sbjct: 861 SKVEEALHLIKNML 874 >gi|326329808|ref|ZP_08196128.1| alanine--tRNA ligase [Nocardioidaceae bacterium Broad-1] gi|325952394|gb|EGD44414.1| alanine--tRNA ligase [Nocardioidaceae bacterium Broad-1] Length = 894 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 342/923 (37%), Positives = 493/923 (53%), Gaps = 65/923 (7%) Query: 3 NVSSIRTTFLEFFQKNG----HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 + + IR F F +N H ++PS+SL+ +DP L+F N+GMVPFK F GQ P Y Sbjct: 5 STAEIRRRFTAHFAENTEIGEHTVVPSASLL-LDDPNLLFVNAGMVPFKPFFLGQATPPY 63 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 T+VQKC+R D++ VG+T RH TFFEM GNFSFG YFKE AI LAW+L+TK Sbjct: 64 PRATSVQKCIRT----PDIEEVGKTTRHGTFFEMCGNFSFGDYFKEGAITLAWELVTKSV 119 Query: 118 ----FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 F D+ LY +V + DEEA LWKK+SGL D+I+R+ ++N+WSM GP GPCS Sbjct: 120 ADGGFGFDESVLYPSVLNGDEEAVALWKKVSGLPDDRIVRLPPSENYWSMGVPGPGGPCS 179 Query: 174 EIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTG 227 EI D+G G + G+RY+E WNLVFMQ + ++ L + IDTG Sbjct: 180 EILIDRGPEF--GADRDWDAGDRYLEFWNLVFMQDNVVAARSKYDVDIDGPLAQTGIDTG 237 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFL 285 +GLER+A ++Q K+N Y+ D+ +I+ + ++TG KY + V RV+ DH+RSS L Sbjct: 238 LGLERVAYLMQGKSNMYETDVVFPVIEKAMELTGKKYGAAYEDDVRFRVVADHVRSSLML 297 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG+ P NEGRGYVLRR+MRRA+ RLLGY +P M LLP +MG Y +L Sbjct: 298 IGDGVTPGNEGRGYVLRRLMRRAIRNMRLLGYEDPAMPELLPISRDKMGETYTDLHTEWD 357 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQD 403 I+ +E+E F KTL G + D + + GD AF+L+DT+G P+D+ + Sbjct: 358 RIKRVADAEEEAFRKTLAAGTQIFDLAATEVKSSGSTTFTGDKAFQLHDTYGFPIDLTLE 417 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLG-LGSGTTEKIWFSLKEKYGATQFIGYDL 462 + GL +D F + EQR RA+A + G ++ + + G T + Y Sbjct: 418 MAAEAGLE-VDEAGFRGLMTEQRERAKADARAKKGQHADLTVYRGILDTNGPTDWQAYTT 476 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L + P+ A++++G+ V+ + E+V D+TPFYA Sbjct: 477 LD------------TESKPV-----------ALLREGKPVDVLGPEEIGEIVLDRTPFYA 513 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRR 581 E+GGQ D G DG RL++ DVQ+ +G+ VH V G SLV +D + R Sbjct: 514 ESGGQSADAGIIEFDGGRLEVVDVQRPVKGLVVHQVRVVDGEFHGGESLVHAKVDPEWRL 573 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 HS TH++H AL +LG Q+GS P LR D +K +T ++ IE+ N+ Sbjct: 574 GARQAHSGTHVVHAALREVLGPTALQSGSFNRPGYLRLDYGWTKGLTPEQMHEIEEVSNN 633 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCGGTHVS 700 + +LPV M A GA AL G Y+D +VRVV + GG S LCGGTHV Sbjct: 634 ALRADLPVSWDYMTLPQAKEWGAIALFGETYDDSKVRVVEI----GGPWSRELCGGTHVD 689 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 + +I + + SE+S+ +G RRIEA TG +L + + + L LK G+VVGRV Sbjct: 690 HSAQIGTIVVTSEASVGSGNRRIEAYTGVEGFKYLARERDVVSELNLLLKTKSGDVVGRV 749 Query: 761 EEIWEEYRKLQL-IHAKRKLQLNVEDLSCHKIA-DVN---FMSHIISEVDSKELKSVMDA 815 ++ E + + I R QL S A DVN ++ + V + +++ Sbjct: 750 SDLMERLKAAEKEIARARTAQLLASGGSIAASAVDVNGVQVVAQRVPGVGGGDARTLAQD 809 Query: 816 LQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 ++ ++ ++L G + +K A V V + A DL + A V+ GG GGG+P Sbjct: 810 VRSRLGDAPAAVVLFGDADDKVAVVAAVNPAGIAKGVKAGDLIKELAPVV-GGRGGGKPD 868 Query: 874 MAQSGGPNGNKADQAIAGVASFL 896 AQ GG + D+A+A V S + Sbjct: 869 FAQGGGTEVGRIDEAVAKVKSLV 891 >gi|306824980|ref|ZP_07458323.1| alanine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432807|gb|EFM35780.1| alanine--tRNA ligase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 872 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 348/926 (37%), Positives = 502/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G + +++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + L +TDVQK G +H V L L ID Sbjct: 498 PFYAEMGGQVADHGQILDAAGNLVATVTDVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++IE Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK +A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKVVAATLKAPQLKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R LQ +A K K + + N +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQVRHLQKENAELKEKAAAAAAGDVFKDVKEANGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPIV-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|317013025|gb|ADU83633.1| alanyl-tRNA synthetase [Helicobacter pylori Lithuania75] Length = 847 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 318/833 (38%), Positives = 473/833 (56%), Gaps = 56/833 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL+FF+ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG +P + Q Sbjct: 3 IRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRAASSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQVLLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFVPLMEEISELTSLDYTSEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K + + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKETVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L+HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFENC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++EQ R++A G + + ++ Y +F+GY+ C P Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTE------------C---P 457 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 S K I +A Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 458 AKALGFFDSDFKEIT-------DAKPNQEVWVLLEKTPFYAEGGGAIGDRGVLLKDNEEA 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 I K G+ +++ + + + + D R +++ +HSATHLL AL +L Sbjct: 511 AIVSDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M A Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLKSQVEHMPLNQAKD 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL KY + VRVVS +++ + LCGG HV +TG I IV ES + +G+R Sbjct: 629 KGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVSSGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ G+ ++++LK+ + LK +V+ + ++ E + Q K + + Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KAPVSM 737 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 DL KI V+ + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 738 ---DLPVEKIHGVDLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784 >gi|261839960|gb|ACX99725.1| alanyl-tRNA synthetase [Helicobacter pylori 52] Length = 847 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 332/884 (37%), Positives = 488/884 (55%), Gaps = 69/884 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + S L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFHNKGHAIYSSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEYKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477 ++EQ R++A G + + ++ Y +F+GY+ L + F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTECLAKALGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 P Q+V V+ ++TPFYAE GG +GD G D Sbjct: 473 DAKP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGVLFKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 I K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 NEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHVSQ GS + LRFD +H K + EL+ +ED VN I ++L M Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS + S LCGG HV +TG I I+ ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRILKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ ++++LK+ LK +V+ + ++ E + Q K Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVIAGINKLKESVKNSQ----KA 733 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 + + DL KI VN + ++ + D KE+ +D L+ K + + M+ KE + Sbjct: 734 PVSM---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMV--FKKENERI 785 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 L ++ + N A A++L GG GGGR A +GG + Sbjct: 786 TLACGVKNAPIKANV--WANEVAQIL-GGKGGGRSDFASAGGKD 826 >gi|281420549|ref|ZP_06251548.1| alanine--tRNA ligase [Prevotella copri DSM 18205] gi|281405322|gb|EFB36002.1| alanine--tRNA ligase [Prevotella copri DSM 18205] Length = 887 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 336/939 (35%), Positives = 506/939 (53%), Gaps = 99/939 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R +F +FF+ GH+++PS+ ++ +DPTLMFTN+GM +K+I G + P Sbjct: 1 MMTANEVRESFKKFFEGKGHKIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPGKDV 60 Query: 61 V-TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI +AW+ LT+ Sbjct: 61 RRVDTQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDMAWEYLTEILK 120 Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L+ LY+TV+ + D EA W K + AD II +DNFW M +TGPCGP Sbjct: 121 LNPADLYVTVFEGSKEEGLERDNEAAGYWAK--HVPADHIINGNKHDNFWEMGDTGPCGP 178 Query: 172 CSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CSEI D + +PG +++ + IEIWN+VFMQ+ ++ LP IDTG Sbjct: 179 CSEIHVDSRTPEEKAQVPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTG 238 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVNH 272 MG ER+ +LQ+K +NYD D+F+ +I+ E ++G KY EG + + Sbjct: 239 MGFERLVRMLQDKHSNYDTDIFQPIIKEIEAISGKKYGFTTPTGENGEGKDEQEKIDIAM 298 Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCT 331 RV DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA LG + M L+ L Sbjct: 299 RVCADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLGQKQAFMYKLVNVLVE 358 Query: 332 EMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAF 388 +MG+A+PEL + LI ++ E++ F +TL++G+ LL+G + L GK + L+G AF Sbjct: 359 QMGAAFPELPAQQELITRVMKEEEDSFLRTLEKGINLLNGDMDELKAHGKTQ-LDGVSAF 417 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 +L+DT+G PLD+ + ++C +D FN+ +++Q+ RAR ++ + +G W L Sbjct: 418 RLFDTYGFPLDLTE-LICRENGYTVDAAGFNEEMKKQKERAR-NAAAVENGD----WEVL 471 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 KE G F+GYD + RKV +K Sbjct: 472 KE--GDQNFVGYDYTEYECHILRYRKVTQKKNSF-------------------------- 503 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 E+V D TPFY E GGQ+GD G + + +Q+ D K+ +H IV+ Sbjct: 504 --YELVLDNTPFYGEMGGQVGDKGVLVSENETIQVIDT-KRENNQSIH--IVKELPKDVN 558 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + +D +NR + NH+ATHLL + L +LG HV Q GS + D LRFD +H + +T Sbjct: 559 ADFMACVDIENREGSAANHTATHLLDYCLKQVLGDHVEQKGSYVDKDTLRFDFSHFQKVT 618 Query: 629 SAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGG 687 EL+ +E VN++I + P+ R E+A GA AL G KY D+VRVV Sbjct: 619 DEELRKVEHMVNEMIRADYPLDEHRDTPIEEAKELGAIALFGEKYGDKVRVVRFG----- 673 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG-QDE--KLKS 744 S+ CGG H TG+I I+SESS+ AGIRRIEA+TG+ + G QD LK Sbjct: 674 -PSAEFCGGIHAKGTGKIGFFKIISESSVAAGIRRIEALTGKACEEAIYGLQDTIVALKG 732 Query: 745 LASFLKVSQGNVVGRVEE------IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798 L + K +G + ++E E+++ + AK KL N ++++ K+ Sbjct: 733 LFNNAKDLEGVIRKYIDEHDALKKDVEKFQAQAVERAKDKLVENAKEINGVKVVTA---- 788 Query: 799 HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLA 856 + ++ K ++ +++ + +I +VG K + ++ ++D++ NA + Sbjct: 789 --VLPMEPAAAKDLVFKVREALPENMICVVGSVYNDKPMLSVMFSDDMVKDHGLNAGKMI 846 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 R +AK++ GGGGG+PH AQ+GG N + A+ V Sbjct: 847 REAAKLI-QGGGGGQPHYAQAGGKNKDGLSAAVDKVVEL 884 >gi|168493286|ref|ZP_02717429.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06] gi|221232124|ref|YP_002511277.1| alanyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669] gi|183576772|gb|EDT97300.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC3059-06] gi|220674585|emb|CAR69148.1| alanyl-tRNA synthetase [Streptococcus pneumoniae ATCC 700669] Length = 872 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 347/926 (37%), Positives = 506/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ H + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAAILKAPQVKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|15901237|ref|NP_345841.1| alanyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] gi|111658578|ref|ZP_01409235.1| hypothetical protein SpneT_02000253 [Streptococcus pneumoniae TIGR4] gi|20532258|sp|Q97Q48|SYA_STRPN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|14972870|gb|AAK75481.1| alanyl-tRNA synthetase [Streptococcus pneumoniae TIGR4] Length = 872 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 347/926 (37%), Positives = 507/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ AVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVDNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K + +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQPKIQELLDAVAGKL 872 >gi|227894659|ref|ZP_04012464.1| alanyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047] gi|227863554|gb|EEJ70975.1| alanyl-tRNA synthetase [Lactobacillus ultunensis DSM 16047] Length = 879 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 350/933 (37%), Positives = 525/933 (56%), Gaps = 96/933 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P +T Sbjct: 5 NSSEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 + QK +R ND++NVG+T RH TFFEMLGNFS G YF+++AI AW+ LT K L Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDQAIPWAWEFLTSPKWLGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY TVY +D + K+W+K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 121 PKDKLYCTVYPKDVASQKVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRG 176 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ Sbjct: 177 QENNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERV 234 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I A+E++T G KY N + ++I DH+R+ SF IADG Sbjct: 235 LSILQDAPTNFETDLFLPIIHATEEMTPGKKYGVNKEDTTAFKIIADHVRAVSFAIADGA 294 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP+N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE Sbjct: 295 LPSNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMESHYPEVMDQRGFIENV 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E+ERF TLD GL LL ++ K D+ ++G AFK++DT+G P ++ + Sbjct: 355 IQNEEERFQSTLDTGLSLLADLIDKAKKSPDKTISGKDAFKMFDTYGFPYELTFESAQDA 414 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ ++ Q+ RAR L S G + ++K+K S+ Sbjct: 415 GLK-VDKKGFDAEMQAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SE 459 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F + ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ Sbjct: 460 F----EYGVYEEPHAKLVD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQNRR 581 + D G DG + ++TDVQ +H VE+G VL ID + R Sbjct: 507 VADHGNIYNQDGELVAKVTDVQHAPNDQNLHFVDLILPVEKG-----QEYVLKIDKERRE 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 L +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E VN Sbjct: 562 GLRHSHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEQLVNQ 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + + V T I E+ GA AL KY D+VRVV + G SS CGGTHV + Sbjct: 622 KIWEAIQVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHVDN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T +I + I SES++ AG+RRIEA+T ++A +L + L + +K ++ N++ ++ Sbjct: 677 TNQIGIFKITSESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQEDVKATKPDNIIDKI 736 Query: 761 E----EIWEEYRKLQLIHAK----RKLQL-----NVEDLSC-HKIADVNFMSHIISEVDS 806 + ++ E ++++ ++ K + Q+ DL+ IADVN M+ Sbjct: 737 DSLESDLHESQKQVEALNKKINQAKAGQIFDDVKQAGDLTVIATIADVNSMN-------- 788 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG 865 +L+ + D + +S +++L + + KA+++I + + LDR A DL + +A + G Sbjct: 789 -DLRELADNWKSSNKSDVLVLAA-NNDGKANMIISLDKKALDRGLKAGDLIKKAAPIF-G 845 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGGGRP+MAQ+GG + AI V + K Sbjct: 846 GGGGGRPNMAQAGGKKPEGLNDAIKAVIDEISK 878 >gi|225857018|ref|YP_002738529.1| alanyl-tRNA synthetase [Streptococcus pneumoniae P1031] gi|225726317|gb|ACO22169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae P1031] Length = 872 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 348/926 (37%), Positives = 507/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 498 SFYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLVID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDVVAGKL 872 >gi|134098622|ref|YP_001104283.1| alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] gi|291009600|ref|ZP_06567573.1| alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] gi|205830197|sp|A4FBD3|SYA_SACEN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|133911245|emb|CAM01358.1| putative alanyl-tRNA synthetase [Saccharopolyspora erythraea NRRL 2338] Length = 890 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 334/922 (36%), Positives = 507/922 (54%), Gaps = 72/922 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I F E F+K GH ++PS+SLI +DPTL+F N+GMV FK F G Y T++QK Sbjct: 6 INQRFTEHFRKAGHTVVPSASLI-LDDPTLLFVNAGMVQFKPYFLGDAPAPYPRATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR G D+D VG+T RH+TFF+M GNFSFG YFKE A++ AW LLT + D Sbjct: 65 CVRTG----DIDEVGKTTRHNTFFQMAGNFSFGDYFKEGAMEHAWGLLTSSQADGGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TV+++DEEA LW+K++G+ A++I DN+W M GP GPCSEI++D+G Sbjct: 121 PERLWVTVFEKDEEAAALWQKVTGIPAERIQVRDAKDNYWDMGVPGPGGPCSEIYYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQ------FEQQNKQERFILPKMSIDTGMGLERMAT 235 G G + +RYIEIWNLVFMQ ++ LP +IDTGMG+ER+A Sbjct: 181 KY-GREGGPVVDEDRYIEIWNLVFMQDIRGELPPKEGHPPIGELPTKNIDTGMGVERVAC 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPA 293 +LQ N Y+ DL + +I +E+++G Y N + V RVI DH RS L+ DG+ P Sbjct: 240 LLQGVENVYETDLVRPVIAKAEELSGRSYGANHEDDVRFRVIADHARSGVMLVGDGVTPG 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NE RGYVLRR++RR + RLLG EP++ + M +YPEL+ I+ +R+ Sbjct: 300 NEARGYVLRRLLRRIIRSTRLLGVHEPVLGEFAAVVRDAMAPSYPELVTEFDRIDSVMRN 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E++ F TL G + D ++ K L G AF+L+DT+G P+D+ ++ +GL+ Sbjct: 360 EEDAFLSTLTAGSKIFDLAVADTKKAGGTQLAGAKAFQLHDTYGFPIDLTLEMASEQGLS 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F + + EQR RA+ + SG + + +L +++G T+F+GY L+ Sbjct: 420 -VDEHGFRELMSEQRRRAKEDAKSRKSGHGDLSTYRTLLDQHGTTEFLGYTDLQ------ 472 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 S V ++ G + A +G +VE++ D+TPFYAE GGQ+ D Sbjct: 473 -----------------AQSRVLGLLVDGVPAKSAAAGTEVELILDRTPFYAEGGGQIAD 515 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG G G+ +++ DVQ+ G+FVH A V G L + SL +D + R + +HSAT Sbjct: 516 TGRLTGPGVEVEVHDVQRAVPGLFVHRAKVTAGELGVDTSLEAAVDSKRRHAIERSHSAT 575 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H A+ + G +Q GS +P +RFD T ++ A L +E+ VN + ++ V Sbjct: 576 HLVHAAVRSAYGKRAAQAGSLNSPGRMRFDFTAPAAVSGAVLGGVEEEVNSYLQNDVEVQ 635 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + + A+ GA AL G KY D+VRVV D G +S LCGGTHV G++ ++ + Sbjct: 636 SYTTTMDRAMELGAVALFGEKYGDQVRVV-----DMGDYSRELCGGTHVGRIGQLGVVKL 690 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-------GNVVGRV--- 760 V++SS+ +G+ R+EA+ G A H+ + + LA KV VV R+ Sbjct: 691 VADSSVGSGVHRVEALVGMDAMRHISKEHLLVSRLAEQFKVPAEELPERIAGVVSRLRSA 750 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E+ E+ R Q++ + +L D+ H + V + VD L+++ ++ ++ Sbjct: 751 EKELEQLRVAQVLQSAGELAGKGTDV--HGVTLV--AEQVPDGVDGGALRALAGEVRGRL 806 Query: 821 QS--GIIMLVGISKEKKASVLIVVT--EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 S ++ L +K + V+ V T +DL + + + +A+V GG GGG+P MAQ Sbjct: 807 GSRPAVVALFSADGDKVSFVVGVNTPAQDLGLKAGKL-VPSFAAEV--GGRGGGKPDMAQ 863 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 GG N AIA + + L + Sbjct: 864 GGGSNPAGITAAIAALRTGLDQ 885 >gi|317968219|ref|ZP_07969609.1| alanyl-tRNA synthetase [Synechococcus sp. CB0205] Length = 878 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 349/907 (38%), Positives = 508/907 (56%), Gaps = 71/907 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+F+++ GH+ + S+SL+P DPT++ T +GM+PFK +F GQ+ T+ Sbjct: 9 AEIRAAFLDFYEQRGHKPMASASLVP-EDPTVLLTIAGMLPFKPVFLGQQPRPSARATSS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T F + + Sbjct: 68 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTTVFGISPKN 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECI 183 L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + E Sbjct: 124 LVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPELG 183 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G+ E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ NN Sbjct: 184 DEGI--DLEDDSRFIEFYNLVFMQYNRDAEGSLTPLENRNIDTGMGLERMAQILQKVPNN 241 Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL LI+ + + G+ Y + + +VI DH R+ + LI DG+ +N GRGY+ Sbjct: 242 YETDLIYPLIETAAGLAGVDYRQLDPKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYI 301 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RR + + RLLG +P + + A M SAYP+L++ + +I L+ E+ RF + Sbjct: 302 LRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLLERQEVILSELKREEARFLE 361 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG LL VL+ K + ++G+ AF+LYDT+G PL++ Q+I GLA +D+ F Q Sbjct: 362 TLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTQEIAEEHGLA-VDLDGFEQ 418 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+E QR RA+A ++ + T + + AT+F GY+LL Sbjct: 419 AMEAQRQRAKAAAVSIDL-TLQDAIDQMAADLEATRFRGYELLDH--------------- 462 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 SS V+A+V GE E A +G V++V D TPFY E GGQ+GD G GDG+ Sbjct: 463 --------SSSVQALVVNGEPAERAEAGDSVQLVLDTTPFYGEGGGQVGDRGVLSGDGLI 514 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + I V + +FVH VERG + + +D RR+ NH+ATHLL AL + Sbjct: 515 VVIEAVSRN-RSVFVHSGRVERGSVSVGDVVHGQVDRACRRRAQANHTATHLLQSALKQV 573 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 + + Q GS + D LRFD + IT+AEL+ IE +N IA+ + + M E A Sbjct: 574 VDPGIGQAGSLVDFDRLRFDFHCPRAITAAELEQIETLINGWIAEAHSLEVQEMTIEKAK 633 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A+GA A+ G KY+D VRVV V S LCGGTHVS+T EI L IVSES + AGI Sbjct: 634 AAGAVAMFGEKYSDVVRVVDVP-----GVSMELCGGTHVSNTAEIGLFKIVSESGVAAGI 688 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRK 778 RRIEA+ G ++L +D +K L K +V RV + E + Q L A+ + Sbjct: 689 RRIEAVAGAAVLAYLNERDAVVKQLGERFKAQPAEIVERVLTLQSELKASQKALTSAREE 748 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASV 838 L L + + +IS +D E + A Q G++ +G + A+V Sbjct: 749 LALAKSAALASQAEAIGDFQVLISRLDGVEGGGLQSAAQ-----GLVDQLG----EGAAV 799 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHMAQSGGPNG 882 ++ D D + +A V+ G G RP++AQ+GG +G Sbjct: 800 VLGGLPDPSDLGKVILVAAFGKGVIAKGQQAGKFIGAVAKACGGGGGGRPNLAQAGGRDG 859 Query: 883 NKADQAI 889 D A+ Sbjct: 860 AALDAAL 866 >gi|328462753|gb|EGF34642.1| alanyl-tRNA synthetase [Lactobacillus helveticus MTCC 5463] Length = 879 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 346/929 (37%), Positives = 519/929 (55%), Gaps = 92/929 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K L + Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY TVY +D ++ ++W+K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 123 EKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 +LQ+ N++ DLF +I A+E++T G KY N + ++I DH+R+ SF IADG LP Sbjct: 237 ILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGALP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + + LG + L+P + M S YPE++ + IE ++ Sbjct: 297 SNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRSFIENVIQ 356 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF LD GL LLD ++ K D+ ++G AFK++DT+G P ++ + GL Sbjct: 357 NEEERFQAALDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDAGL 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F+ ++ Q+ RAR L S G + ++K+K S F Sbjct: 417 K-VDKKGFDAEMQAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SVFE 461 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ+ Sbjct: 462 RD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQVA 508 Query: 530 DTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSI 585 D G DG + ++TDVQ +H + IL E VL ID + R L Sbjct: 509 DHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDL---ILPMEKGKEYVLKIDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E+ VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL KY D+VRVV + G SS CGGTH S+T +I Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQI-----GDFSSEFCGGTHCSNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + I+SES++ AG+RRIEA+T ++A +L + L + + +K ++ N++ +++ + Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYQYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLN-------------VEDLSC-HKIADVNFMSHIISEVDSKELK 810 + Q Q+N DL+ +ADVN M+ +L+ Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMN---------DLR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 + D + +S +++L + KA+++I + + LD+ A DL + +A + GGGGG Sbjct: 792 ELADNWKSGNKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIF-GGGGG 849 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GRP+MAQ+GG + AI V + K Sbjct: 850 GRPNMAQAGGKRPEGLNDAIKAVIEEISK 878 >gi|15807291|ref|NP_296021.1| alanyl-tRNA synthetase [Deinococcus radiodurans R1] gi|20532268|sp|Q9RS27|SYA_DEIRA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|6460111|gb|AAF11848.1|AE002062_1 alanyl-tRNA synthetase [Deinococcus radiodurans R1] Length = 890 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 346/912 (37%), Positives = 508/912 (55%), Gaps = 78/912 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58 + IR +L FF+ GH LPS S I DPT +FT +GM PFK F G + Sbjct: 6 TTAEIRERYLYFFETKGHLRLPSHSTI-APDPTTLFTVAGMQPFKENFMGAPAVFDGQPS 64 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + VTT QKCVR G D++NVGRT RH + FEM+GNFSFG YFK AI AW+ LT + Sbjct: 65 KRVTTAQKCVRVG----DIENVGRTRRHLSLFEMMGNFSFGDYFKRDAIHWAWEFLTGPE 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171 +D+ ++Y+TVY +D+EAF W + GL A+ I R ++NFW GPCGP Sbjct: 121 WMGMDKDKMYVTVYKDDDEAFGYWTQDIGLPAEHIHRFDADENFWPANAPLEGPNGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMS 223 CSEI++D+GE G + E R++E+WNLVF Q+++Q+ LP + Sbjct: 181 CSEIYYDRGENYGDDTWGDYYQTRESARFLEVWNLVFPQYDRQDLDASGQPVLKDLPFKN 240 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283 IDTGMGLER+A+V+Q+ + Y D+FK +++ +++G YEG V+HRV+ +H+RS S Sbjct: 241 IDTGMGLERVASVVQDVPDFYSNDVFKPIVERVAELSGKPYEGETSVSHRVVAEHIRSVS 300 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 ++ADG +N GRGY R+IMRRA+ + +LG EP + L+ + MG AYPEL Sbjct: 301 MIVADGTAFSNTGRGYTARKIMRRAIRHGYMLGLREPQLYRLVELVVDSMGGAYPELQHN 360 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + +E ++R+E+E+F KTL+ G+ L G+LS + K L G AF+LYDT+G P+D+ ++ Sbjct: 361 QSRVEASVRAEEEQFLKTLEGGIKRLGGLLSGMEKGSTLVGKDAFELYDTYGFPVDLTKE 420 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSL----GLGSGTTEKIWFSLKEKYGATQFIG 459 I G++ +D + ++LE + ARA S L G E + + ATQF+G Sbjct: 421 IAEEYGVS-VDEAGYAESLEHAQEIARAGSKYGKSELFGGHQEAL-----DGLPATQFVG 474 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD G D +VL A++ GE + +G + VV QTP Sbjct: 475 YDQTSG------DGQVL-----------------ALLSGGERLSHLPAGSEATVVLSQTP 511 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FY E GG++GDTG DG + D QK +G+F+H +VE+G L+ E + V + Sbjct: 512 FYGEGGGEVGDTGRLEWDGGAGIVRDTQKTKQGVFLHDVLVEQGELK-EGTRVRGVVSPE 570 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R + +H+ATHLLH AL +LG V Q GS + D LRFD +H +++ E+ +E V Sbjct: 571 RAAIQRHHTATHLLHAALRAVLGGGVQQKGSRVAADQLRFDFSHGAAMSAEEIAQVETLV 630 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYE-DGGVH---SSALCG 695 + ++ N PV R M +A A+GA AL G KY D VRVV VE + D G H S LCG Sbjct: 631 SRWVSANFPVSWREMPIAEAKAAGATALFGEKYGDVVRVVRVEGDVDFGGHAVSSMELCG 690 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 G HVS TG+I IVS+ ++ AG+RRIEA+ G++A + L G+ A+ L S Sbjct: 691 GAHVSRTGDIGAFVIVSDENVAAGVRRIEALAGEQATAWLRGRLNASAKAAALLNTSPEG 750 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-------CHKIADVNFMSHIISEVDSKE 808 + RV + + + + A+ + QL + ++ S +S ++ E Sbjct: 751 LEERVSGLQGQLKAAEKETAQARRQLAEAQMGGGGSAAQTRELGGFKVASLKLSGIEGNE 810 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGG 866 L+ D L QSG ++V I+ +K +++ T+D + + +L +K+ GGG Sbjct: 811 LRGAADKLLD--QSGADLVV-IASDK--GLVVKATKDAVAK--GAHAGQLVSKLAAAGGG 863 Query: 867 GGGGRPHMAQSG 878 GGGRP MAQ+G Sbjct: 864 KGGGRPDMAQAG 875 >gi|171779579|ref|ZP_02920535.1| hypothetical protein STRINF_01416 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281681|gb|EDT47115.1| hypothetical protein STRINF_01416 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 872 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 343/916 (37%), Positives = 505/916 (55%), Gaps = 74/916 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQVRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT FD + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGFELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++ + W + G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDTYNRWISL-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178 Query: 183 IPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 L E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 FDPDHVGIKLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDPDGDNM-SFKVIADHIRSLSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + IE+ +R Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGKIMESYYPEVLEKREFIEKIVR 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G +LD +L+ L GKD + D+ FKLYDT+G P+++ +++ +G Sbjct: 358 REEETFARTIDAGSNMLDQLLADLKAAGKDTVEGKDI-FKLYDTYGFPVELTEELAEDKG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F A++EQ+ RARA + GS G + S+ E+ S F Sbjct: 417 FK-IDHAGFEAAMKEQQERARASVVKGGSMGMQNETLSSITEE--------------SVF 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 E+ +VL S + I+ E E GQ + +VF +TPFYAE GGQ+ Sbjct: 462 SYEE-EVL------------ESTLSVIIADKERTEAVSEGQAL-LVFAKTPFYAEMGGQV 507 Query: 529 GDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G D I ++ DVQK G +H V L + L ID + R + N Sbjct: 508 ADHGVIKNDKGDIVARVIDVQKAPNGQALHTVEV-LASLSVGTTYTLEIDAKRRHSVIKN 566 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 567 HTATHLLHAALHHVIGEHATQAGSLNEEGFLRFDFTHFEAVTADELRQIEEEVNQQIWNA 626 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +PV+T + + A + GA AL G KY VRVV++ G +S LCGGTHVS+T EI Sbjct: 627 IPVITVETDIDTAKSMGAMALFGEKYGKNVRVVTI-----GDYSIELCGGTHVSNTAEIG 681 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765 + IV E I +G RRI A+TG+ A ++E LK++A LKV Q V +V + E Sbjct: 682 IFKIVKEEGIGSGTRRILAVTGKEAFEAYRQEEEDLKAIAETLKVPQLKEVTKKVVSLQE 741 Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820 + KLQ +A+ K + + + N + I S+V D+ L++ D ++K Sbjct: 742 QLHKLQKENAELKEKAAAAQAGNVFKDVKEANGLRFIASQVTVSDAGALRTFADNWKQKD 801 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++L EK ++ ++D+ +A +L + A ++ G GGG+P MA +GG Sbjct: 802 YSDVLVLAAAIGEKVNVLVASKSKDV----HAGNLIKALAPIV-SGRGGGKPDMAMAGGS 856 Query: 881 NGNKADQAIAGVASFL 896 + K +A VA L Sbjct: 857 DAAKIADLLAAVAENL 872 >gi|78187794|ref|YP_375837.1| alanyl-tRNA synthetase [Chlorobium luteolum DSM 273] gi|123582508|sp|Q3B1I7|SYA_PELLD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78167696|gb|ABB24794.1| alanyl-tRNA synthetase [Chlorobium luteolum DSM 273] Length = 887 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 338/889 (38%), Positives = 497/889 (55%), Gaps = 91/889 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +FL+FF H ++ S+ +IP +DPTL+FTN+GM FK++F + Y QK Sbjct: 6 IRQSFLDFFAAKSHTIVRSAPVIPADDPTLLFTNAGMNQFKDVFLAKGTRPYTRAADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RA GKHNDL++VGR HHTFFEMLGN+SFG Y+KE AI AW+LLT+ + L RLY Sbjct: 66 CIRASGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYYKEEAISWAWELLTEVWKLPADRLY 125 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 TVY +D+E+ ++W + + + I+R DNFW M ETGPCGPCSEI D P Sbjct: 126 ATVYHDDDESARIWAEKTSIEPSHILRFGDKDNFWEMGETGPCGPCSEIHID---LTP-- 180 Query: 187 LPGSSEE-----GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS +E R IE+WNLVF+Q+++Q LP+ +DTGMG ER+ V+Q K Sbjct: 181 -DGSGKELVNAGDHRAIELWNLVFIQYDRQPDGRLEPLPQRHVDTGMGFERVCAVMQSKA 239 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 +NYD D+F L Q ++TG+ Y +G + RVI DH R+ +F ++DG +P+NEGR Sbjct: 240 SNYDTDVFLPLFQRLSELTGVTYGASMDGRQDIAMRVIADHARTLTFALSDGAMPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRRI+RRA+ Y+R LG + P++ L+ L MG + EL + +E +R+E+E Sbjct: 300 GYVLRRILRRALRYSRDLGCSGPILHQLVGTLADSMGDVFGELRDRRDAVERIIRAEEES 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TLDRG+ + + + + +L G+ AFKLYDT+G P D+ + + GL +D Sbjct: 360 FITTLDRGMEIFGELAAATARAGGRMLKGEDAFKLYDTYGFPFDLTRLLATEAGL-DVDG 418 Query: 416 ISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 F ++EQ+SRAR+ G G+G+ + WFS AT F+GYD L Sbjct: 419 EGFEHCMQEQKSRARSDRREKQQTGDGAGSWQ--WFSDSH---ATTFLGYDRL------- 466 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 P S+I+ A G ++ +V +TPFYAE+GGQ GD Sbjct: 467 -------AMP--------STIIGAAHASGHLL----------LVLAETPFYAESGGQTGD 501 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE------MSLVL--------TID 576 G R+Q+TD +K + FVH +V R + M +V+ +++ Sbjct: 502 RGWLESAAYRMQVTDTRKDGDS-FVH--VVSRAFDKVRDTEIDPMDIVIEEATPVDASVE 558 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R++ NH+ATHLLH AL ILGSHV Q GS +T + LRFD +H +T E++++E Sbjct: 559 RILRQETERNHTATHLLHAALRRILGSHVQQKGSFVTSERLRFDFSHFSKMTPEEIQAVE 618 Query: 637 DNVNDIIAQNLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 VN+ I V + ++AIA GA A G KY +RVR+V V G+ S+ LCG Sbjct: 619 AEVNEHIRCAAHVSKHADLPYDEAIAKGALAFFGDKYAERVRMVEVP----GI-SAELCG 673 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV + G+I + I+SESS AGIRRIEA+TG+ A L + +L+ + LK+ Sbjct: 674 GTHVDNIGQIGIFKIISESSAAAGIRRIEALTGRAAEMLLWKEYHELQDVRQQLKLKADE 733 Query: 756 VVG-RVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKEL 809 V ++ E+ EE ++L+ A K ++ L S +I ++ ++ VD+ L Sbjct: 734 AVAEKLAELQEEKKELEKELAGLKSASVIDALVRDATSAEEIGGCRIVTKVLEGVDADTL 793 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 +S AL++K+ +L I+ K + L + D+ + +D +L Sbjct: 794 RSAAMALREKLPVSAGLLCSIADGKVS--LAAFSSDVAVKEKGIDAGKL 840 >gi|291570537|dbj|BAI92809.1| alanyl-tRNA synthetase [Arthrospira platensis NIES-39] Length = 878 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 349/905 (38%), Positives = 506/905 (55%), Gaps = 57/905 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL F+ + H+++PS+SL+P DPT++ T +GM+ FK IF GQ TT Sbjct: 13 SEIRQKFLNFYAERQHKIMPSASLVP-EDPTVLLTIAGMLQFKPIFLGQRPREVNRATTS 71 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F L R Sbjct: 72 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPPER 127 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ ED+EAF +W+ G+ +I R+ DNFW TGPCGPCSEI++D Sbjct: 128 LIVSVFKEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYD-FHPER 186 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ NNY Sbjct: 187 GDDHIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPNNY 246 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + + G+ Y + V+ +VI DHLR+ LIADG+ +N GRGY+L Sbjct: 247 ETDLIFPIIKTAADLAGIDYAKSDNKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGYIL 306 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + YP + + +I+ L+ E+ RF +T Sbjct: 307 RRLIRRVVRHGRLIGIRGEFTTQVAETAISLSQDVYPNTRERERVIKGELQREESRFLET 366 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL +L + E ++G AF LYDT+G PL++ Q+I GL +D+ F Sbjct: 367 LERGEKLLAELLEK--QPEQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVEGFEAE 423 Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + QR R++A ++ L T + L E+ T F+GYD Sbjct: 424 MSAQRKRSQAAHETIDL---TVQGSLDKLAEQIHPTAFLGYDF----------------- 463 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 P + T V+A++ G+ V EAV+G +V++V DQTPFY E+GGQ+GD G + Sbjct: 464 PDSEAT------VEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 517 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++ DV+K ++ IF+H VERG L +++ ID RR+ NH+ATHLL AL Sbjct: 518 IVRVDDVKKDSD-IFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 576 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T+ EL+ +E+ VN IA+ P M E+A Sbjct: 577 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 636 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY VRVV GV S LCGGTHV++T EI L IVSE+ I AG Sbjct: 637 KNKGAIAMFGEKYAAVVRVVDYP----GV-SMELCGGTHVTNTAEIGLFKIVSETGIAAG 691 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777 IRRIEA+ GQ +L +D +K L+ LK + R + E + + QL K Sbjct: 692 IRRIEAVAGQSVLDYLNVRDTVVKELSDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 751 Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + D + ++ D+ + + VD + LK+ + LQ+K+ ++L +S K Sbjct: 752 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVSDGK 811 Query: 835 ---KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 A+ VV +D + A AK L GGGGGGRP++AQ+GG + +K +A++ Sbjct: 812 VSLVAAFSPVVIKD--KKLQAGKFIGAIAK-LCGGGGGGRPNLAQAGGRDPSKLPEALST 868 Query: 892 VASFL 896 S L Sbjct: 869 AKSQL 873 >gi|86142096|ref|ZP_01060620.1| alanyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217] gi|85831659|gb|EAQ50115.1| alanyl-tRNA synthetase [Leeuwenhoekiella blandensis MED217] Length = 849 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 339/902 (37%), Positives = 499/902 (55%), Gaps = 82/902 (9%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 + S+ ++ NDPTLMFTN+GM FK F G P VT QKC+R GKHNDL+ VG+ Sbjct: 1 MASAPMVIKNDPTLMFTNAGMNQFKEFFLGNGTPKDTRVTDTQKCLRVSGKHNDLEEVGK 60 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE-------- 134 HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D+ +LY+T+++ D+ Sbjct: 61 DTYHHTMFEMLGNWSFGDYFKQDAIDWAWELLTEVYKIDKNKLYVTIFEGDDSEGLERDA 120 Query: 135 EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPGGLPGS--- 190 EA+ +WKK ++ D+I+ DNFW M + GPCGPCSEI D + E PG+ Sbjct: 121 EAYDMWKK--HVAEDRILNGNKKDNFWEMGDQGPCGPCSEIHVDLRSEEEKAKTPGAELV 178 Query: 191 SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFK 250 + + + +EIWNLVF+QF ++ LP IDTGMG ER+ VLQ+KT+NYD D+F Sbjct: 179 NADHPQVVEIWNLVFIQFNRKADGSLENLPARHIDTGMGFERLCMVLQDKTSNYDTDVFT 238 Query: 251 HLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRR 307 LI+ E + KY E +I RVI DH+R+ +F IADG LP+N G GYV+RRI+RR Sbjct: 239 PLIREIETIAHSKYGQSEETDIA-IRVIADHVRAVAFSIADGQLPSNTGAGYVIRRILRR 297 Query: 308 AMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL 366 A+ Y L EP + L+ L EM A+PEL + + LI ++ E++ F +TLD+GL Sbjct: 298 AVRYGFTFLNTKEPFIYKLVSVLVDEMSKAFPELKKQQNLIFNVIKEEEQSFLRTLDQGL 357 Query: 367 VLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426 VLLD +++ E+ +G AF+LYDT+G P+D+ IL +G +D +F L++Q+ Sbjct: 358 VLLDSIIAETKGKEV-SGAKAFELYDTYGFPIDLTALILSEKGYT-LDEKAFQTELQKQK 415 Query: 427 SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486 R+RA +G E +++ E+ +F+GYD L+ + RK+ +K Sbjct: 416 DRSRA------AGKIEAGDWTIVEEDSEEEFVGYDTLQTPVRITRYRKINTKK------- 462 Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITD 545 G + ++VF+ TPFYAE GGQ+GD G +G + ITD Sbjct: 463 --------------------EGDQYQLVFNLTPFYAEGGGQVGDKGYLEAANGDVVYITD 502 Query: 546 VQKKAEGIFVHHAIVERGILRT-EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 KK + +H + + + + + +D + R + NHSATHLLH AL +LG+H Sbjct: 503 T-KKENNLIIH---LSKNLPKNLNETFTAVVDAKQRHRTQANHSATHLLHQALRAVLGTH 558 Query: 605 VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASG 663 V Q GS + LRFD +H +T+ ELK IE VN I + LP+ R + + AIA G Sbjct: 559 VEQKGSMVHSGYLRFDFSHFSKVTAEELKDIEQFVNARIQEQLPLEEQRAIPYDQAIAEG 618 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY D VR + S LCGGTH +T +I I SES++ +GIRRI Sbjct: 619 AIALFGEKYGDAVRTIRFG------KSMELCGGTHAENTADIWYFKIKSESAVASGIRRI 672 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-----LIHAKRK 778 EAITG + QDE+L+++ S L ++ +E + E +L+ L+ K K Sbjct: 673 EAITGDAVMQYFEEQDEQLEAVRSLLNNAK-EPAKSIESLQSENNELKKQLEVLLAEKAK 731 Query: 779 LQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 NV+ +I +VN + + EV D+ +K + L ++ + +L+ + KA Sbjct: 732 ---NVKGELKTEIQEVNGVQFLAKEVDLDANGIKDLAFQLGGEVDD-LFLLLASRQGGKA 787 Query: 837 SVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 + + ++L NA + R K + GGGGG+P A +GG N + QA+ V + Sbjct: 788 LLSCYIDKELAKAKDLNAGTIVRELGKFI-QGGGGGQPFFATAGGKNPDGIAQALNEVKT 846 Query: 895 FL 896 +L Sbjct: 847 YL 848 >gi|55820540|ref|YP_138982.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMG 18311] gi|55822431|ref|YP_140872.1| alanyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066] gi|81559736|sp|Q5M126|SYA_STRT1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|81560908|sp|Q5M5L5|SYA_STRT2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|55736525|gb|AAV60167.1| alanyl-tRNA synthetase [Streptococcus thermophilus LMG 18311] gi|55738416|gb|AAV62057.1| alanyl-tRNA synthetase [Streptococcus thermophilus CNRZ1066] Length = 872 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 335/912 (36%), Positives = 507/912 (55%), Gaps = 72/912 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FDL + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDLPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGEE 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + E LP +IDTG GLER+A Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293 V+Q N++ DLF +I+ E+++G Y+ + ++ +VI DH+RS +F I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIGDGALPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ + IE+ ++ Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKRDFIEKIVKR 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+E F +T+D G +LD +L++L GKD + D+ FKLYDT+G P+++ +++ G Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDI-FKLYDTYGFPVELTEELAEDEGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F A++EQ+ RARA + GS G ++ S+F+ Sbjct: 418 K-IDHEGFKAAMKEQQDRARASVVKGGS-------------MGMQNETLANITEPSEFLY 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 E S + IV + SGQ + +VF+QTPFYAE GGQ+ D Sbjct: 464 E-------------AETAESRLSVIVADDARHDSVNSGQAL-LVFEQTPFYAEMGGQVAD 509 Query: 531 TGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G A G + ++ DVQ+ G +H VE G L + L ID+ R ++ NH Sbjct: 510 HGTISDAAGTTV-ARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G+H Q GS + LRFD TH + +T EL++IE+ VN+ I + Sbjct: 568 TATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + + A + GA AL G KY RVRVVS+ G +S LCGGTHV++T EI + Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAEIGM 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 I+ E I +G RRI A+T + A +++ LKS+A+ LK Q V +V + E+ Sbjct: 683 FKIIKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASLQEQ 742 Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821 LQ +A K K + + N + +I S+V D+ L++ D ++ Sbjct: 743 LHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++L +EK ++ +E++ +A +L ++ A ++ G GGG+P MA +GG + Sbjct: 803 SDVLVLAAHIREKVNVLVASKSENV----HAGNLIKVLAPIV-SGRGGGKPDMAMAGGSD 857 Query: 882 GNKADQAIAGVA 893 N ++ VA Sbjct: 858 ANSIQDLLSAVA 869 >gi|283458020|ref|YP_003362628.1| alanyl-tRNA synthetase [Rothia mucilaginosa DY-18] gi|283134043|dbj|BAI64808.1| alanyl-tRNA synthetase [Rothia mucilaginosa DY-18] Length = 895 Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust. Identities = 338/916 (36%), Positives = 508/916 (55%), Gaps = 65/916 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I +++FF GH ++PS+SLI N+P MFT +GMVPF F G+E P + T+VQK Sbjct: 6 ISKRWIDFFASRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D++ VG+T RH TFF+M GNFSFG YFKE+AI A++LLT F LD Sbjct: 65 CIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTTPQDKGGFGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++T+Y+ D+EAF +W G A++I R+ +N+WS + GP GP SEIF+D+G Sbjct: 121 PERLWVTIYEGDDEAFDIWHNKVGFPAERIQRMGMKENYWSTGQPGPAGPDSEIFYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGMGLERMAT 235 G G + + +RYIEIWNLVFMQ+++ K + IL PK +IDTG+G+ER+A Sbjct: 181 AY-GKEGGPAADDDRYIEIWNLVFMQYQRGEGIGKDDFEILGDLPKKNIDTGLGVERLAM 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLRSSSFLI 286 +LQ N Y+ D + ++ A+ +++G KY G+ + V RV+ DH+RSS LI Sbjct: 240 LLQGVENFYETDQVRPVLDAASKLSGKKYHGSESAEDEGYEDDVRMRVVADHIRSSLMLI 299 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG+ P+NEGRGY+LRR+MRRA+ RLLG TEP + L PA M A+P + Sbjct: 300 ADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPVLFPASRDAMKGAFPYVADDFER 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 I +E++ F T++ G L+ ++ KD ++G AF L+DT+G P+D+ ++ Sbjct: 360 ISRIAYAEEKAFLHTIETGTERLEEAVAAAKKDGSNAVSGAEAFALHDTYGFPIDLTLEM 419 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 G+ +D +F + + EQR RA+A + K K GA DL Sbjct: 420 AAEAGVK-VDEKAFRELMAEQRHRAQADA---------------KAKKGAFA----DLSE 459 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 K + E + + + ++AI+ G V A +G K+EVV D+TPFYAEA Sbjct: 460 LRKLVDERGSIFTGYTELR----TETKLRAILVDGVSVPAAKAGDKIEVVLDETPFYAEA 515 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ DTG G+G + + DVQ+ +G+ VH A+V G + T +V +D Q RR Sbjct: 516 GGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEVHTGADVVAQVDVQRRRDGE 575 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HS TH++H AL +LG+ +Q GS LRFD S+ ++ + + +E+ N I Sbjct: 576 KAHSGTHIIHAALHQVLGNEATQRGSFNKEGYLRFDFAWSEGLSESAKREVEEVANLAIR 635 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N V+TR M +A A GA +L G KY D VRVV + GG S LCGGTHV S+ E Sbjct: 636 DNHEVITREMPLAEAKALGAMSLFGEKYGDVVRVVEI----GGEFSRELCGGTHVGSSAE 691 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763 I L +++E S+ +G RR+EA+ G + +HL + + L +KV S ++ ++ + Sbjct: 692 IGSLTLLTEGSVGSGNRRVEALVGLDSFNHLAAERTLVNQLTGLMKVQSSADLPEKINQT 751 Query: 764 WEEYR--KLQLIHAKR-KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + + + +L +R KLQ L + I V ++H E+D+ ++ + L+ Sbjct: 752 LAKLKAAEKELAQLRREKLQAEAGKLLENAQTIGSVRVLAHDAGELDANGVRDLALDLRS 811 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + S ++ + V++V T + A L R++A VL GGGGGG+ +AQ Sbjct: 812 RFGSEAAVVAVVGVANGRPVVLVATNEGAREAGVKAGALVRVAAGVL-GGGGGGKDDVAQ 870 Query: 877 SGGPNGNKADQAIAGV 892 GG + +K A+ V Sbjct: 871 GGGQDASKIGAALDAV 886 >gi|168484561|ref|ZP_02709513.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00] gi|172042221|gb|EDT50267.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CDC1873-00] Length = 872 Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust. Identities = 344/925 (37%), Positives = 506/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ AVS ++F +T Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGEL 872 >gi|284050469|ref|ZP_06380679.1| alanyl-tRNA synthetase [Arthrospira platensis str. Paraca] Length = 876 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 349/905 (38%), Positives = 506/905 (55%), Gaps = 57/905 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FL F+ + H+++PS+SL+P DPT++ T +GM+ FK IF GQ TT Sbjct: 11 SEIRQKFLNFYAERQHKIMPSASLVP-EDPTVLLTIAGMLQFKPIFLGQRPREVNRATTS 69 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI W++ T+ F L R Sbjct: 70 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIAWGWEISTEVFGLPPER 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ ED+EAF +W+ G+ +I R+ DNFW TGPCGPCSEI++D Sbjct: 126 LIVSVFKEDDEAFAIWRDQIGIPPHRIQRMGEEDNFWKSGPTGPCGPCSEIYYD-FHPER 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQ+ + L +IDTGMGLERMA +LQ NNY Sbjct: 185 GDDHIDLEDDSRFIEFYNLVFMQYNRDADGNLTPLQNQNIDTGMGLERMAQILQCVPNNY 244 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL +I+ + + G+ Y + V+ +VI DHLR+ LIADG+ +N GRGY+L Sbjct: 245 ETDLIFPIIKTAADLAGIDYAKSDNKTKVSLKVIGDHLRAVVHLIADGVTASNVGRGYIL 304 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RL+G + + YP + + +I+ L+ E+ RF +T Sbjct: 305 RRLIRRVVRHGRLIGIRGEFTTQVAETAISLSQDVYPNTRERERVIKGELQREESRFLET 364 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL +L + E ++G AF LYDT+G PL++ Q+I GL +D+ F Sbjct: 365 LERGEKLLAELLEK--QPEQISGQDAFVLYDTYGFPLELTQEIAEENGLT-VDVEGFEAE 421 Query: 422 LEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 + QR R++A ++ L T + L E+ T F+GYD Sbjct: 422 MSAQRKRSQAAHETIDL---TVQGSLDKLAEQIHPTAFLGYDF----------------- 461 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 P + T V+A++ G+ V EAV+G +V++V DQTPFY E+GGQ+GD G + Sbjct: 462 PDSEAT------VEAVLIAGKSVTEAVAGSEVQIVLDQTPFYGESGGQIGDRGYLTTSDV 515 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 +++ DV+K ++ IF+H VERG L +++ ID RR+ NH+ATHLL AL Sbjct: 516 IVRVDDVKKDSD-IFIHFGRVERGTLTAGITVNARIDRACRRRAQANHTATHLLQAALKL 574 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 I+ +SQ GS + D LRFD + +T+ EL+ +E+ VN IA+ P M E+A Sbjct: 575 IVDPGISQAGSLVAFDRLRFDFNCPRALTTEELQQVENQVNSWIAEAHPATVTQMALEEA 634 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY VRVV GV S LCGGTHV++T EI L IVSE+ I AG Sbjct: 635 KNKGAIAMFGEKYAAVVRVVDYP----GV-SMELCGGTHVTNTAEIGLFKIVSETGIAAG 689 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KLQLIHAKR 777 IRRIEA+ GQ +L +D +K L+ LK + R + E + + QL K Sbjct: 690 IRRIEAVAGQSVLDYLNVRDTVVKELSDRLKAKPEELPERFTNLQAELKTTQKQLEAVKA 749 Query: 778 KLQLNVEDL---SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +L + D + ++ D+ + + VD + LK+ + LQ+K+ ++L +S K Sbjct: 750 ELAIAQSDQLLSTAERVGDLPILVAELPGVDGESLKTAAERLQQKLGESAVVLGSVSDGK 809 Query: 835 ---KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 A+ VV +D + A AK L GGGGGGRP++AQ+GG + +K +A++ Sbjct: 810 VSLVAAFSPVVIKD--KKLQAGKFIGAIAK-LCGGGGGGRPNLAQAGGRDPSKLPEALST 866 Query: 892 VASFL 896 S L Sbjct: 867 AKSQL 871 >gi|260102891|ref|ZP_05753128.1| alanine-tRNA ligase [Lactobacillus helveticus DSM 20075] gi|260083304|gb|EEW67424.1| alanine-tRNA ligase [Lactobacillus helveticus DSM 20075] Length = 879 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 346/929 (37%), Positives = 519/929 (55%), Gaps = 92/929 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K L + Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY TVY +D ++ ++W+K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 123 EKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 +LQ+ N++ DLF +I A+E++T G KY N + ++I DH+R+ SF IADG LP Sbjct: 237 ILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGALP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + + LG + L+P + M S YPE++ + IE ++ Sbjct: 297 SNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRSFIENVIQ 356 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF LD GL LLD ++ K D+ ++G AFK++DT+G P ++ + GL Sbjct: 357 NEEERFQAALDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDAGL 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F+ ++ Q+ RAR L S G + ++K+K S F Sbjct: 417 K-VDKKGFDAEMQAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SVFE 461 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ+ Sbjct: 462 RD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQVA 508 Query: 530 DTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSI 585 D G DG + ++TDVQ +H + IL E VL ID + R L Sbjct: 509 DHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDL---ILPMEKGKEYVLKIDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E+ VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL KY D+VRVV + G SS CGGTH S+T +I Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHCSNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + I+SES++ AG+RRIEA+T ++A +L + L + + +K ++ N++ +++ + Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYQYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLN-------------VEDLSC-HKIADVNFMSHIISEVDSKELK 810 + Q Q+N DL+ +ADVN M+ +L+ Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMN---------DLR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 + D + +S +++L + KA+++I + + LD+ A DL + +A + GGGGG Sbjct: 792 ELADNWKSGNKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIF-GGGGG 849 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GRP+MAQ+GG + AI V + K Sbjct: 850 GRPNMAQAGGKRPEGLNDAIKAVIEEISK 878 >gi|183220780|ref|YP_001838776.1| alanyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910880|ref|YP_001962435.1| alanyl-tRNA synthetase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|205830131|sp|B0SGD3|SYA_LEPBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830132|sp|B0SPT4|SYA_LEPBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|167775556|gb|ABZ93857.1| Alanine--tRNA ligase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779202|gb|ABZ97500.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase; AlaRS) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 919 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 343/959 (35%), Positives = 504/959 (52%), Gaps = 108/959 (11%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 V I + +FQ GH ++PSSSLIP DPTL+FT +GMV FK +FTG + Y Sbjct: 3 FKTVQEIARLYTNYFQDKGHTIVPSSSLIPKGDPTLLFTTAGMVQFKPLFTGAVELPYTR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +VQKCVR DL+ VG+T RH TFFEMLGNFSFG YFK+ AI+ A D ++ Sbjct: 63 AASVQKCVRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKKEAIEYALDFSLNHLEI 118 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQ 179 + ++++T+Y +D+EA K W + G+ ++I+R+ DNFW A ++G CGPCSE++ D+ Sbjct: 119 PKDKIWVTIYLDDDEAKKFWMDL-GIPEERIVRLGKKDNFWGPAGDSGACGPCSELYLDR 177 Query: 180 GE------C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 G C P PG + +RY+E WNLVF QF Q E L + IDTG GLE Sbjct: 178 GPEKGGPTCGNNPNCKPGC--DCDRYLEYWNLVFNQFNQTVSGELLPLKQTGIDTGSGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGIL 291 R+A +LQE + YD D K +I+ E ++G KY+ + RVI DH RS F + DGI Sbjct: 236 RVAMLLQEVDSVYDTDELKSIIKQIEILSGYKYDETTKQSFRVITDHSRSVFFSLGDGIY 295 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P GRGYV+RR++RRA +AR LG EP + L+ L YPEL IE L Sbjct: 296 PDRTGRGYVIRRLIRRASLFARKLGIHEPFLYKLVSTLKDLYSLRYPELKDKAKDIESIL 355 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409 + E+E F TL+ GL L+ VL HL K++ ++ G F+LY T+G P ++ ++++ RG Sbjct: 356 KKEEELFLHTLEVGLEELETVLEHLKKEKQTVVTGKEGFRLYSTYGFPREMTKELVEERG 415 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW----FSLKEKYGATQFIGYDLLRG 465 + D F + LE+ R +RA G +KI FS + T+F+GY Sbjct: 416 FS-FDDKGFEEELEKDRYLSRASWKG------KKIQYLTGFSASPEL-KTEFLGY----- 462 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 T S ++ V G+ V G++ +V D+TPFYAE G Sbjct: 463 -----------------TETKAKSRVLHLFV-DGKSVTSTKQGEEAVIVLDKTPFYAEGG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GDTG +G + Q+ D QK+ + F+H ++ +G L + I+ + R+ L+ Sbjct: 505 GQIGDTGYLKKEGFQFQVQDTQKEND-TFLHMGMILKGNLSVGDVVDSEIEVERRQNLAN 563 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HS THLL+ AL ILGSHV+Q GS ++ D LRFD +H K ++ E+ IE +VN+ ++ Sbjct: 564 HHSGTHLLNGALRRILGSHVTQKGSIVSADYLRFDFSHPKALSKEEIIQIETDVNEAVSA 623 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N+PV T ++ A SGA ++ KY VRV+S+ G S CGGTHVS+T EI Sbjct: 624 NIPVKTEVLEIGQAKESGALSMFDEKYGSVVRVISM-----GDKSKEFCGGTHVSNTKEI 678 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----- 760 IV E S AG RRIEAI G+ ++ + Q + L S +S G + Sbjct: 679 GFFAIVKEGSPGAGNRRIEAICGESVVNYFLHQFQTLASKIETHNLSAKETFGDLKEFGI 738 Query: 761 ------------------EEIWEEYRKLQ-------------LIHAKRK-----LQLNVE 784 +E+ RKL+ L AK+K Q+N E Sbjct: 739 TKEVPSPEILQTMFHQDGKEVVTRLRKLREELEIELEEKSSALFKAKKKREQKEFQMNPE 798 Query: 785 DL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVL 839 + H ++ + VD+K LK + D+L+ K + I+ L G ++ + ++++ Sbjct: 799 LVDGLLQKAHHFPKGKVVTEVFPSVDAKSLKDLADSLKAK-EPEILCLFGTTEGESSTLV 857 Query: 840 IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 + + L +R + D+ + + V+ G GGGRP MAQ GG +++ S K Sbjct: 858 FMCNKVLNERGIHCGDILKETL-VMLDGKGGGRPDMAQGGGKKPESVAKSLEFALSLAK 915 >gi|148989504|ref|ZP_01820863.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73] gi|149007347|ref|ZP_01831005.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74] gi|147761151|gb|EDK68119.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74] gi|147925047|gb|EDK76128.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73] gi|332074706|gb|EGI85180.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA17545] Length = 872 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 344/925 (37%), Positives = 506/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ AVS ++F +T Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|325846721|ref|ZP_08169636.1| alanine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481479|gb|EGC84520.1| alanine--tRNA ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 870 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 323/908 (35%), Positives = 518/908 (57%), Gaps = 58/908 (6%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 ++ +R +L FF K H +L S SLIP +D +L+ N+GM P K FTG++K T Sbjct: 6 MNELRKEYLNFFGSKKNHTVLKSFSLIPEDDDSLLLINAGMAPLKKYFTGEKKMKNNRAT 65 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + Q+C+R G D++ VG T RH TFFEMLGNFSFG YFK AI A++ LT+ ++D+ Sbjct: 66 SSQRCIRTG----DIERVGITERHGTFFEMLGNFSFGDYFKREAIHWAFEFLTENLEIDK 121 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 L+++VY++D+EA+K+W + GLS D+I+R DNFW + E GPCGP SEIF D+G Sbjct: 122 DLLWVSVYEKDDEAYKIWNEEIGLSKDRILRFGKEDNFWEL-EVGPCGPDSEIFVDRGVE 180 Query: 181 ECIP--GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + I PG +++ +R++E+WNLVF QF + +E L +IDTGMGLERMA VLQ Sbjct: 181 KAIDENDNKPG-NDDSDRFMEVWNLVFTQFNKNINKEYTPLLHPNIDTGMGLERMAMVLQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEG 296 K N ++ID+ +++I+ E+++ KY+ N + ++ RVI DH ++ +F+++DGI P+NE Sbjct: 240 NKDNIFEIDVNQNIIREIEELSNKKYKENKKDDISIRVIADHAKAMTFMVSDGIQPSNEK 299 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + +LLG + ++ + Y EL+ K I ++ E+ Sbjct: 300 RGYVLRRLIRRAFRHGKLLGIEGEFLSSVIEYVIDSYKDEYDELVDRKDKIISVIKKEEA 359 Query: 357 RFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F T+D GL +L+ + L ++ + L+G+ AFKLYDT+G PLD+ ++IL L +D Sbjct: 360 NFQNTIDSGLDILNEYIKDLRENNKDTLDGEDAFKLYDTYGFPLDLTKEILTENNLK-VD 418 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F++ +E QR+ AR + + I +++ T+F+GYD L Sbjct: 419 TKEFDKQMENQRNLARNARKSDAGWSLDSINI---DEFDKTEFVGYDDLE---------- 465 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V + + + E V G K V+ D+T FYAE GGQ+ DTG Sbjct: 466 -------------VKANIIGLFDDKEKVSFIKEGNKGIVISDKTSFYAEGGGQVADTGLI 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 I + ++ +VQKK E I +H+ V G L + + +D + R ++ NH+ATHLL Sbjct: 513 ITGSAKAKVYNVQKKNE-IIIHYVEVIDGDLNLAKADFI-VDKERRLDITRNHTATHLLD 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL IL V Q GS + + LRFD T+ ++ E++ IE+ +N+ I Q L V IM Sbjct: 571 QALRNILNEDVKQAGSLVDEEKLRFDFTYPNALSDDEIEKIENEINEKIRQQLKVKKEIM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 +++ GA L KY D VRVVS++ +S LCGG HV+++ E+++ I+ ES Sbjct: 631 PYKESEKLGAIGLFEDKYKDMVRVVSID-----DYSIELCGGCHVNNSSEVLMFKILQES 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S +GIRRIEAITG++ +L + ++ LK + N++ + E + EE + L+ Sbjct: 686 SAASGIRRIEAITGRKVYEYLNSNLGLINVVSKALKTNPKNILLKAESLNEEIKNLKSDI 745 Query: 775 AKRKLQLNVEDLSC---HKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLV 828 K K + N +D+ +++ D N + H D L++ + +++K + I++ Sbjct: 746 QKLK-EFNEKDVYKDIENEVQDANGIKLLVHKFENEDLDTLRNFEERIKEKYKDLIVVFA 804 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 ++ + K V++ L +R+NA + + +K+ GG GGG+ + AQ+GG + +K D+A Sbjct: 805 TVNND-KIVFTASVSDSLTNRYNAGKIVKEVSKIT-GGNGGGKKNFAQAGGKDISKLDEA 862 Query: 889 IAGVASFL 896 + V + Sbjct: 863 LKKVYELI 870 >gi|323341643|ref|ZP_08081876.1| alanine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464068|gb|EFY09261.1| alanine--tRNA ligase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 869 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 339/913 (37%), Positives = 521/913 (57%), Gaps = 88/913 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IRT FL++F+ H + P + L+P +D TL++ NSG+ K F G+ KP + V Sbjct: 7 SEIRTMFLDYFKAQDHMIEPGAPLVPIDDDTLLWINSGVAALKKYFDGRVKPKKPRIANV 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL--TKEFDLDQ 122 QK +R ND+DNVG+T RHHTFFEMLGNFS G YFKE AI A++ L ++ DLD Sbjct: 67 QKSLRT----NDIDNVGKTARHHTFFEMLGNFSIGDYFKEEAIGFAYEFLFSSEWLDLDV 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 + Y +V+ +D+EAF +W +S +I+R T+DNFW + + GPCGP SEIF+D+GE Sbjct: 123 NKAYFSVHTDDQEAFDIWVNKYNVSPSRILR--TDDNFWQIGD-GPCGPNSEIFYDRGEK 179 Query: 183 -----IPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFILPKMSIDTGMGLERMA 234 I L E +RY+E+WN+VF QF E + LP+ +IDTGMG ER+ Sbjct: 180 YDPEHIGERLFFEDLENDRYVEVWNIVFSQFDGVEGGDIHTFKELPQKNIDTGMGFERLV 239 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 +++Q+ N+D DLF +IQA E +T MKY+ +N++ +RVI DH+RS F +ADG + +N Sbjct: 240 SIVQDGDTNFDTDLFIPIIQAIEALTPMKYQ-DNVMAYRVISDHIRSLVFTLADGAVFSN 298 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRRI+RRA+ + ++L + L+ + MG +YP L + + +I + + SE Sbjct: 299 EGRGYVLRRILRRAVRFGKVLEIEGTFLHGLVDDVIAVMGDSYPNLAEHRDMIVKLILSE 358 Query: 355 DERFGKTLDRG-LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 +ERF KTL G +LLD + ++ ++ ++ GDVAFKLYDT+G P+++ Q+I + + Sbjct: 359 EERFAKTLAGGEKLLLDTIEAN--QEAVITGDVAFKLYDTYGFPIELTQEIAEEHHVT-V 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D+ F +LEEQ+ RAR+ + S G+ ++ + KE ++FI YD+ Sbjct: 416 DLDGFKASLEEQKERARSSRQKVESMGSQQEDLLNFKEN---SEFI-YDVFE-------- 463 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE-------VVFDQTPFYAEAG 525 QG +V V G++V+ VVFD+T FYAE+G Sbjct: 464 ------------------------TQGRVVGLFVDGKRVDSFTGKGHVVFDKTCFYAESG 499 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ DTG D + ++ DV+K G +H V+ G + L ID + R + Sbjct: 500 GQVADTGTIESDSAKGKVLDVKKANGGQPLHFVDVD-GTITMGQVFDLKIDAKRRILIRK 558 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHS HLLH AL +++G HVSQ GS + + RFD +H + +T +L+ +E +N IA+ Sbjct: 559 NHSCVHLLHSALKSVVGDHVSQAGSYVDDNYFRFDFSHFEKVTDEQLEKVELMINQWIAE 618 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +LP+ E+A A GA AL Y VRVV++ G S LCGGTH TGEI Sbjct: 619 SLPITVVEKPLEEAKAMGAMALFSENYGSVVRVVTM-----GDASMELCGGTHAHGTGEI 673 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-QGNVVGRVEEIW 764 + +VSE S+ +G+RRI T A + + ++ ++ + LK+S Q ++ ++EE+ Sbjct: 674 GVFKLVSEESVGSGVRRILGKTSFGAYTSYKETEFEVDAIRTQLKLSPQKSIKTKIEEME 733 Query: 765 EEYRKLQLIHAKRKLQ----LNVEDLSCHKIADV--NFMSHIISEVDSKELKSVMDALQK 818 E ++L+ K KL L + ++A+V N +S + ++D +E+ +V+ L + Sbjct: 734 AE---MKLLEGKYKLMMADVLKAKTQEYIQMAEVVGNDLSFVWIDMDDQEM-NVVKELVE 789 Query: 819 KIQSGIIMLVGISKEKKASVLIVV---TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 +I+ + +V ++ K +SV VV + + A DLA+ A V GG GGG+P+ A Sbjct: 790 RIRDH-VDIVFVANHKASSVNFVVGCSDKAIKAGVKAGDLAK-EAAVTTGGNGGGKPNFA 847 Query: 876 QSGGPNGNKADQA 888 Q+GG + K + A Sbjct: 848 QAGGKDITKIEDA 860 >gi|163754032|ref|ZP_02161155.1| hypothetical protein KAOT1_20457 [Kordia algicida OT-1] gi|161326246|gb|EDP97572.1| hypothetical protein KAOT1_20457 [Kordia algicida OT-1] Length = 870 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 340/916 (37%), Positives = 503/916 (54%), Gaps = 74/916 (8%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 IR FLEFF+ H+++PS+ ++ NDPTLMF NSGM PFK F G P + Q Sbjct: 5 DIRAKFLEFFKSKTHQIVPSAPMVTKNDPTLMFVNSGMAPFKEYFLGNGTPKSNRIADTQ 64 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D+ L Sbjct: 65 KCLRVSGKHNDLEEVGYDTYHHTMFEMLGNWSFGDYFKKEAITWAWELLTEVYGIDKDIL 124 Query: 126 YITVY---DE-----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 Y+TV+ DE D+EA+ LWK+I + ++I+ DNFW M E GPCGPCSEI Sbjct: 125 YVTVFEGSDEDGLKLDQEAYDLWKEI--VPEERILMGNKADNFWEMGEQGPCGPCSEIHV 182 Query: 178 D-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 D + E +PG+ + + + +EIWNLVFMQ+ ++ + LP +DTGMG ER+ Sbjct: 183 DIRSEEEKAKIPGADLVNMDHPQVVEIWNLVFMQYNRKADKSLEKLPAQHVDTGMGFERL 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGIL 291 VLQ+ +NYD D+F LI+ E +T +KY N V+ RVI DH+R+ SF IADG L Sbjct: 243 CMVLQDVKSNYDTDVFTPLIREIETITNVKYGTNEKVDVAIRVIADHVRAVSFSIADGQL 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N RGYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL + K LI+ Sbjct: 303 PSNNTRGYVIRRILRRAVRYGFTFLNKKEPFIYRLVDVLDNKMGKAFPELKEQKQLIQNV 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E++ F +TLD+GLVLLD V+ ++ ++++G F+L DT+G P D+ + IL RGL Sbjct: 363 IKEEEQSFLRTLDQGLVLLDRVIENVN-GKVVSGKKVFELKDTYGFPEDLTELILRERGL 421 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 + F+ AL+ Q+ R + W L E +F+GYDLL + Sbjct: 422 T-YNEEEFDAALKIQQEGGRK-----ATAIQADDWVVLLED-EEEEFVGYDLLEVDVRLT 474 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 RK+ +K G + ++VF+ TPFY E GGQ+GD Sbjct: 475 RYRKIETKK---------------------------EGVQYQLVFNMTPFYPEGGGQVGD 507 Query: 531 TG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G +G + + D KK + +H I + + L +D + R + + NH+A Sbjct: 508 KGYVETSNGDVIYVLDT-KKENNLIIH--ITKNLPKKLNEPLRAVVDKKQRERTAANHTA 564 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ILG+HV Q GS + LRFD +H +T EL+ +E+ VN I LP+ Sbjct: 565 THLLHQALREILGTHVEQKGSAVHSKYLRFDFSHFSKLTVEELRDVENFVNSRIEGKLPL 624 Query: 650 VTRIMNR--EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + NR E+A+A GA AL G KY D VR + S LCGGTHV +T +I Sbjct: 625 EEK-RNRPVEEALADGALALFGEKYGDTVRSIRFG------KSIELCGGTHVQNTADIWH 677 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I SE ++ AGIRRIEAIT + + + L + + V V ++ +E Sbjct: 678 FKIKSEGAVAAGIRRIEAITYDATKEFYFENNRAYYEIKDVLN-NPKDAVKAVTDLKDEN 736 Query: 768 RKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE--LKSVMDALQKKIQSG 823 KL Q+ + + N++ +++ D+N + + +VD + +K++ L +I++ Sbjct: 737 AKLRKQIENLLKDKAKNLKGELKNELKDINGVQFLAKQVDLDQNGIKNLAFELGGEIKN- 795 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + + + E K + ++++L+ F+A + R K++ GGGGG+P A +GG N Sbjct: 796 LFLFFATATENKVMLTCYISKELVSERGFDAGKVVRELGKLI-HGGGGGQPFFATAGGKN 854 Query: 882 GNKADQAIAGVASFLK 897 +AI V ++K Sbjct: 855 PGGIPKAIERVKEYVK 870 >gi|322387551|ref|ZP_08061160.1| alanine--tRNA ligase [Streptococcus infantis ATCC 700779] gi|321141418|gb|EFX36914.1| alanine--tRNA ligase [Streptococcus infantis ATCC 700779] Length = 872 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 341/925 (36%), Positives = 502/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D +++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDTDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFLPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKEKGQTVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAV+ ++F +TP Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVTEGTASLIFAETP 498 Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + +TDVQK G +H V L LTID Sbjct: 499 FYAEMGGQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLTIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEAIAVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A++G+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVSGKEAFEAYREQEDALKAVAATLKAPQLKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + + N +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKDVKEANGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+D+ +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDVLVLVAAIGDKVNLLVASKTKDI----HAGNLVKELAPIV-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|323140610|ref|ZP_08075534.1| alanine--tRNA ligase [Phascolarctobacterium sp. YIT 12067] gi|322414874|gb|EFY05669.1| alanine--tRNA ligase [Phascolarctobacterium sp. YIT 12067] Length = 873 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 347/914 (37%), Positives = 512/914 (56%), Gaps = 68/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FFQ GH +LPS+SLIP +DPTL+ +GM PFK FTG+ KP +TT Sbjct: 7 NEIREKFLKFFQDRGHLMLPSASLIPQDDPTLLIIGAGMAPFKPFFTGKMKPPATRITTC 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR G D++NVGRT RHHT+FEMLGNFSFG YFK+ I +W+ LTKE L + Sbjct: 67 QKCVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKKEVIPWSWEFLTKELGLPGDK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LYIT++ ED+EAF +W + G+ D I+R+ DN+W + +GPCGP SEI D G Sbjct: 123 LYITIHTEDDEAFDIWHNVVGVPEDHIVRLA--DNWWEIG-SGPCGPDSEIHIDLGPERG 179 Query: 185 GGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P G + +R++EIWNLVF QF Q L +IDTG GLER+A+V+Q K + Sbjct: 180 CGKPTCGPGCDCDRFLEIWNLVFTQFNQMPDGTYPPLKNKNIDTGAGLERLASVVQGKPS 239 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N++ DL +I+ + ++ ++Y + V+ +VI DH+RS +F+I DGILP+NEGRGYV Sbjct: 240 NFETDLIFPIIEYAAKIANVEYGKDKATDVSLKVIADHVRSMTFMIGDGILPSNEGRGYV 299 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ +ARLLG E + + + G AYP L++ I++ + E+ F + Sbjct: 300 LRRILRRAIRHARLLGINEMFLTGAVDVVIGMFGHAYPNLVEKADFIKKVVEMEETSFLR 359 Query: 361 TLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL +G LL+ + L + +L+G AFKL DT G P ++ ++IL G+ +D F Sbjct: 360 TLKQGCELLNEEIEKLKAENKTVLDGATAFKLNDTFGFPWELTEEILEEAGMT-MDKEGF 418 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + ALE QR AR +K G + + Sbjct: 419 DAALEVQRKMAR-------EARNDK--------------------EGRPVVYNTSGINVA 451 Query: 479 KPPIDLTNGVSSIVKAI-VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + +D + IVK + +E A G V V+ D T F+AE GGQLGD G Sbjct: 452 ELKVDEAATEAKIVKMYPAHDAQPIENAADGTDVAVICDVTAFHAEGGGQLGDIGTITAS 511 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + +K +G + V G + ++ +D + ++ NH+ATHLLH AL Sbjct: 512 TGVIAVNVTKKLPDGAVIMIGSVTEGTVAVGDAVTFAVDKARKMDIARNHTATHLLHAAL 571 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG+HV+Q GS + PD LRFD +H +T+ ELK +E VN+ + V + E Sbjct: 572 KQVLGAHVNQAGSYVGPDRLRFDFSHFSQVTAEELKEVEAIVNEQVLAGKAVNIEELPIE 631 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A GA AL G KY + VRVV+V S CGG+HVS+T +I + IVSE S Sbjct: 632 EAKKKGATALFGEKYGNIVRVVTVPD-----FSMEFCGGSHVSNTAQIGMFKIVSEGSSG 686 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-----L 772 AG+RRIEA+TG A +H+ +E + LA+ LK +V R+E + E + Q L Sbjct: 687 AGVRRIEAVTGHGAVAHVNATEEMVNGLAAELKCRCCDVPTRLEALQCELKAAQKKAEEL 746 Query: 773 IHAKRKLQL-NVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSGIIMLV 828 K+Q+ NV D +I D N + ++ +V++ L+++ D ++ K+ +++ Sbjct: 747 AAEIAKVQVSNVAD----QIKDANGVPVLVQKVNADSVDALRNLGDQMRDKVGGVVVLAA 802 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + +K S+L + T+D + + +A ++ + AK L GGGGGGRP MAQ+G + K D+ Sbjct: 803 VMG--EKVSILTMATKDAVAKGVHAGNIVKAVAK-LCGGGGGGRPDMAQAGAKDVAKVDE 859 Query: 888 AIAG----VASFLK 897 A+A VA+ +K Sbjct: 860 ALAAAFDIVAAMVK 873 >gi|149277763|ref|ZP_01883903.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Pedobacter sp. BAL39] gi|149231451|gb|EDM36830.1| alanine--tRNA ligase (alanyl-tRNA synthetase) [Pedobacter sp. BAL39] Length = 900 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 340/951 (35%), Positives = 517/951 (54%), Gaps = 122/951 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +L+FF+ H ++PS+ ++ NDPTLMFTN+GM FK++F G+ Y +T Q+ Sbjct: 6 IRQAYLKFFESKQHHIVPSAPIVVKNDPTLMFTNAGMNQFKDLFLGEAAIKYPRITDTQR 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI +W+LLT+ + + + +LY Sbjct: 66 CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEVYRIPKDKLY 125 Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +++++ DEEA++LWK+ + ++II DNFW M +TGPCGPCSEI D Sbjct: 126 VSIFEGDEKEGLPRDEEAYELWKQF--VPEERIILGNKKDNFWEMGDTGPCGPCSEIHVD 183 Query: 179 QGECIP-------GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 C P G + + + IEIWN VFMQF + LP +DTGMG E Sbjct: 184 ---CRPDDERATVAGKSLVNADHPQVIEIWNNVFMQFNRLKDGSLQPLPAQHVDTGMGFE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289 R+ VLQEK +NYD D+F+ LIQ G+ Y + + RV+ DH+R+ SF+IADG Sbjct: 241 RLVRVLQEKPSNYDTDVFQPLIQFIASHAGVVYGADEKTDIAMRVMADHIRAISFVIADG 300 Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+N GYV+RRI+RRA+ YA L EP + L+P L + + EL+ K ++ Sbjct: 301 QLPSNNKAGYVIRRILRRAVRYAYTFLNLKEPFLNQLVPVLADQFSGVFDELVLQKDFVQ 360 Query: 349 ETLRSEDERFGKTLDRGLVLLDG-------------------------VLSHLGKDEILN 383 + + E+ F +TL G+ + V S L +++ Sbjct: 361 KVVMEEEVSFLRTLATGIQRFENYTKKQADFLMSENAIDTEKPFEHPWVYSILKDQMVIS 420 Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAG-IDIISFNQALEEQRSRARAHSLGLGSGTTE 442 GD AF+L DT+G P+D+ + L AR ID+ +N AL +Q+ R+RA + + +G Sbjct: 421 GDFAFELNDTYGFPIDLTE--LMAREKNWVIDMKEYNTALLKQKERSRA-ATAIDTGD-- 475 Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502 W + ++F+GYD + + RKV Sbjct: 476 --WIVVHGDLD-SEFVGYDDFETETQVIKYRKV--------------------------- 505 Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL---QITDVQKKAEGIFVHHAI 559 A ++ ++V +TPFYAE+GGQ+GDTG + D RL ++TD KK G+ VH+ Sbjct: 506 -NAKGREQYQIVLSKTPFYAESGGQVGDTG-RLEDHSRLFSVEVTDT-KKENGVIVHYTD 562 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 L + + ID R NH+ATHLLH AL +LG+HV+Q GS + P+ LRF Sbjct: 563 TLPEDL--DGTFWAVIDEDKRLLSQDNHTATHLLHAALKKVLGTHVNQKGSLVNPEYLRF 620 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRV 678 D +H I+ +L +IE VN + +N+P+ R + + AI+SG AL G KY + VRV Sbjct: 621 DFSHFAKISEEDLAAIEHLVNQKVRENIPLKEQRDVPYDQAISSGVTALFGEKYGELVRV 680 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 ++ ++D +S LCGGTHV +TG+I I+SES++ AG+RRIEAIT +A + ++ Q Sbjct: 681 IT--FDDH--YSKELCGGTHVQATGQIGYFKIISESAVAAGVRRIEAITADKAEAFILDQ 736 Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI---ADVN 795 + +L L + LK ++ ++ V + EE +L+ A++ + DL I DVN Sbjct: 737 NRELNELKALLKGNK-DLKAAVSGLLEENARLKK-EAEKAMLAQSADLKNEVIKLAKDVN 794 Query: 796 FMSHIISEVDSKELKSVMDALQ------KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849 M+ I + V + + MDA++ K + S + ++ + K + +++TE+L+ Sbjct: 795 GMNFIATHV----VLNSMDAVKNLAFEVKDLVSNLFLVFTTLIDDKPGITVMLTENLVKE 850 Query: 850 --FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 NA ++ R AK + GGGGG+P A +GG N + G+A L+K Sbjct: 851 RGLNASNIVRELAKEI-QGGGGGQPFYATAGGKNKD-------GLAVVLQK 893 >gi|290580864|ref|YP_003485256.1| putative alanyl-tRNA synthetase [Streptococcus mutans NN2025] gi|254997763|dbj|BAH88364.1| putative alanyl-tRNA synthetase [Streptococcus mutans NN2025] Length = 872 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 342/916 (37%), Positives = 513/916 (56%), Gaps = 74/916 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R +L+F++ H + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQVRQMWLDFWKSKDHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FDL + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDDAIKWGFELLTSPEWFDLPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE- 181 +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDSYNRWIE-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178 Query: 182 ----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 I L E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 FDPDHIGVRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKLSGKTYDQDGDNM-SFKVIADHIRSLSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG EP + L+P + M S YPE+++ + IE+ ++ Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINEPFLYKLVPTVGKIMESYYPEVLEKQDFIEKIVK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+E F +T+D G +LD +L+ L + L G F+LYDT+G P+++ +++ G Sbjct: 358 REEETFARTIDAGSNMLDQLLADLKAADKDTLEGKDIFRLYDTYGFPVELTEELAEDAGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F A++EQ+ RARA+ + GS G + ++ EK S F Sbjct: 418 K-IDHQGFQAAMKEQQERARANVVKGGSMGMQNETLSNITEK--------------STFN 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 E + S + I+ E + EAVS +V +VF +TPFYAE GGQ+ Sbjct: 463 YE-------------KEALDSSLSVIIADNERI-EAVSEGQVLLVFSETPFYAEMGGQVA 508 Query: 530 DTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G D ++TDVQK G +H V G L + L ID++ R ++ NH Sbjct: 509 DHGLIKNDKGDTVARVTDVQKAPNGQALHTVDV-LGSLSVGTTYHLEIDHERRNRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL ++G+H +Q GS + LRFD TH + +T EL+ IE+ VN I + + Sbjct: 568 TATHLLHAALHNVIGNHATQAGSLNEVEFLRFDFTHFEAVTPEELRQIEEEVNQQIWKAI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + + A GA AL G KY VRVVS+ G +S LCGGTH+ +T EI + Sbjct: 628 PVTTIETDLDTAKEMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHLKNTSEIGI 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEE 766 IV E I +G RRI A+T + A +++ LK +A+ LK Q N V +V + ++ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDILKEIAATLKAPQMNQVANKVASLQDQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821 KLQ +A+ K + + +VN + +I S+V D+ L++ D ++K Sbjct: 743 LHKLQKENAELKEKAAAATAGDIFKDVKEVNGLRYIASQVEVADAGALRTFADQWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++LV + KK +VL+ ++D+ +A +L + A ++ G GGG+P MA +GG Sbjct: 803 SDVLVLV-TNIGKKVNVLVASKSKDI----HAGNLIKTLAPIV-SGRGGGKPDMAMAGGS 856 Query: 881 NGNKADQAIAGVASFL 896 + + IA VA L Sbjct: 857 DASAIKDLIAAVAENL 872 >gi|225017450|ref|ZP_03706642.1| hypothetical protein CLOSTMETH_01377 [Clostridium methylpentosum DSM 5476] gi|224949860|gb|EEG31069.1| hypothetical protein CLOSTMETH_01377 [Clostridium methylpentosum DSM 5476] Length = 879 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 300/737 (40%), Positives = 445/737 (60%), Gaps = 48/737 (6%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R FL FF+ GH L S LIP D +L+ NSGM P K F GQE P + V Sbjct: 4 TGLNELREKFLSFFESKGHTRLKSYPLIPQGDNSLLLINSGMAPMKKFFLGQEVPPNKRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D++NVG+T RH T+FEMLGNFSFG YFK A + AW+ +TKE +L Sbjct: 64 TTCQKCIRT----PDIENVGKTARHGTYFEMLGNFSFGDYFKHEATEWAWEFVTKELELP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R+++++Y +D+EAF++W K G+ I+R+ DNFW + +GPCGPCSE++FD+GE Sbjct: 120 IDRIWVSIYQDDDEAFEIWTKERGVDPSHIVRMGKEDNFWEIG-SGPCGPCSELYFDRGE 178 Query: 182 CIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P E +R++E WNLVF QF + + +IDTGMGLER+A ++QE Sbjct: 179 DKGCGSPDCRVGCECDRFVEFWNLVFSQFNGDGEGHYEPMEHPNIDTGMGLERLACIMQE 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILPANEGR 297 N +++D ++++ ++ G+KY+ + V+ RVI DH+RS++F+I DG++P+NEGR Sbjct: 239 VDNLFEVDTVQNIMNHISEIAGVKYKQDPKVDVCLRVITDHIRSTTFMIGDGVIPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + LG +P + ++ + E SAYPEL + I++ +R+E+E Sbjct: 299 GYVLRRLLRRAARNGKQLGIRDPFLYKVVDTVIAENKSAYPELEENADYIKKIVRAEEEN 358 Query: 358 FGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F KT+D+G+ LL+ ++ + + +IL+G+ AFKLYDT+G P+D++++I+ +G+ +D Sbjct: 359 FAKTIDKGMELLNNIIDSIDSNIESKILSGEQAFKLYDTYGFPIDLIKEIISEQGI-DVD 417 Query: 415 IISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F + + EQ++RAR L + G + + + E T+F+GY+ Sbjct: 418 EARFRELMNEQKTRAREAKLNSDTVGWSSENYHITDE---PTEFVGYETYE--------- 465 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 C + ++ + + GE EEA G +V +VFD+TPFYAE+GGQ+GD G Sbjct: 466 ---CD----------AKLLHILTEDGE-AEEAKEGDRVNLVFDRTPFYAESGGQVGDRGV 511 Query: 534 -AIGDGIRLQITDVQKKAEGIF-VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 IG+ + + I D QK G +H +V G ++ ++ L+ID R + NH+A H Sbjct: 512 FVIGNSV-VNILDCQKDPSGQHSLHLGLVMAGSIQKGVTGHLSIDGLKRDATARNHTAAH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL LGSHV Q G + + LRFD H + +T EL ++E VN I + + V T Sbjct: 571 LLQKALRDELGSHVHQAGQLVDSERLRFDFNHFEAMTPQELLNVEQAVNAKILEAVKVTT 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 M+ E A A GA AL G KY D VRVV D +S LCGGTHV +T ++ L I+ Sbjct: 631 SEMDIESARAQGAMALFGEKYGDIVRVV-----DADGYSVELCGGTHVDNTSKLGLFKII 685 Query: 712 SESSIRAGIRRIEAITG 728 SESS AGIRRIEA TG Sbjct: 686 SESSAAAGIRRIEATTG 702 >gi|255327164|ref|ZP_05368239.1| alanine--tRNA ligase [Rothia mucilaginosa ATCC 25296] gi|255295782|gb|EET75124.1| alanine--tRNA ligase [Rothia mucilaginosa ATCC 25296] Length = 895 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 338/916 (36%), Positives = 508/916 (55%), Gaps = 65/916 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I +++FF GH ++PS+SLI N+P MFT +GMVPF F G+E P + T+VQK Sbjct: 6 ISKRWIDFFASRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D++ VG+T RH TFF+M GNFSFG YFKE+AI A++LLT F LD Sbjct: 65 CIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTTPQDKGGFGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++T+Y+ D+EAF +W G A++I R+ +N+WS + GP GP SEIF+D+G Sbjct: 121 PERLWVTIYEGDDEAFDIWHNKVGFPAERIQRMGMKENYWSTGQPGPAGPDSEIFYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGMGLERMAT 235 G G + + +RYIEIWNLVFMQ+++ K + IL PK +IDTG+G+ER+A Sbjct: 181 AY-GKEGGPAADDDRYIEIWNLVFMQYQRGEGIGKDDFEILGDLPKKNIDTGLGVERLAM 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLRSSSFLI 286 +LQ N Y+ D + ++ A+ +++G KY G+ + V RV+ DH+RSS LI Sbjct: 240 LLQGVENFYETDQVRPVLDAASKLSGKKYHGSESAEDEGYEDDVRMRVVADHIRSSLMLI 299 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG+ P+NEGRGY+LRR+MRRA+ RLLG TEP + L PA M A+P + Sbjct: 300 ADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPVLFPASRDAMKGAFPYVADDFER 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 I +E++ F T++ G L+ ++ KD ++G AF L+DT+G P+D+ ++ Sbjct: 360 ISRIAYAEEKAFLHTIETGTERLEEAVAAAKKDGSNAVSGAEAFALHDTYGFPIDLTLEM 419 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 G+ +D +F + + EQR RA+A + K K GA DL Sbjct: 420 AAEAGVK-VDEKAFRELMAEQRHRAQADA---------------KAKKGAFA----DLSE 459 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 K + E + + + ++AI+ G V A +G K+EVV D+TPFYAEA Sbjct: 460 LRKLVDERGSIFTGYTELR----TETKLRAILVDGVSVPAAKAGDKIEVVLDETPFYAEA 515 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ DTG G+G + + DVQ+ +G+ VH A+V G + T +V +D Q RR Sbjct: 516 GGQAADTGVITGNGFIIDVQDVQQPVKGLSVHRAVVREGEVHTGADVVAQVDVQRRRDGE 575 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HS TH++H AL +LG+ +Q GS LRFD + ++ + + +E+ N I Sbjct: 576 KAHSGTHIIHAALHQVLGNEATQRGSFNKEGYLRFDFAWGEGLSESAKREVEEVANLAIR 635 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N V+TR M +A A GA +L G KY D VRVV + GG S LCGGTHV S+ E Sbjct: 636 DNHEVITREMPIAEAKALGAMSLFGEKYGDVVRVVEI----GGEFSRELCGGTHVGSSAE 691 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKV-SQGNVVGRVEEI 763 I L +++ESS+ +G RR+EA+ G + +HL + + L +KV S ++ ++ + Sbjct: 692 IGSLSLLTESSVGSGNRRVEALVGLDSFNHLAAERTLVNQLTGLMKVQSSADLPEKINQT 751 Query: 764 WEEYR--KLQLIHAKR-KLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + + + +L +R KLQ L + I V ++H E+D+ ++ + L+ Sbjct: 752 LAKLKAAEKELAQLRREKLQAEAGKLLENAQTIGSVRVLAHDAGELDANGVRDLALDLRS 811 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + S ++ + V++V T + A L R++A VL GGGGGG+ +AQ Sbjct: 812 RFGSEAAVVAVVGVANGRPVVLVATNEGAREAGVKAGALVRVAAGVL-GGGGGGKDDVAQ 870 Query: 877 SGGPNGNKADQAIAGV 892 GG + +K A+ V Sbjct: 871 GGGQDASKIGAALDAV 886 >gi|315221813|ref|ZP_07863725.1| alanyl-tRNA synthetase [Streptococcus anginosus F0211] gi|315189046|gb|EFU22749.1| alanyl-tRNA synthetase [Streptococcus anginosus F0211] Length = 872 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 342/925 (36%), Positives = 507/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAFELLTSPD 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D +++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDHDSYNRWISV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPEHQGLRLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y +G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKNYNPDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG +P + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINDPFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G ++ L +++G FKLYDT+G P+++ Q+I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAQSIVEELKAKGQSVISGTDVFKLYDTYGFPVELTQEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I A Sbjct: 412 AEEAGMT-VDREGFETAMKEQQERARASVVKGGSMGMQNETLQNI--------TAESHFN 462 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 Y+ +S+ + AIV E VEE +G K +VF +TP Sbjct: 463 YE-----------------------KEALSAKLVAIVAADEEVEEVSTG-KAYLVFSETP 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G +L Q+ DVQK G +H V L L ID+ Sbjct: 499 FYAEMGGQVADHGHIFDSEGQLIAQVVDVQKAPNGQPLHTVEV-VAPLTLNQEYKLEIDH 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL +LG H +Q GS + LRFD TH + +T+ EL+ IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNVLGKHATQAGSLNEVEFLRFDFTHFQAVTAEELRRIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + + + T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 EVNEKIWEAIDIKTIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 H+ +T EI L IV E I +G RRI A+T + A +++ LK++A+ LKV Q V Sbjct: 673 HMKNTSEIGLFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEDALKAIATTLKVPQMKEV 732 Query: 758 GR-VEEIWEEYRKLQLIHAKRKLQLNVED-----LSCHKIADVNFMSHIISEVDSKELKS 811 R VE + E+ R+LQ +A+ K + + H++ +F++ +S D+ L++ Sbjct: 733 SRKVEALQEQLRQLQKENAELKEKAAAAASGEIFKNVHEVNGCSFIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV EK ++ T+D+ +A +L + A ++ G GGG+ Sbjct: 793 FADTWKQKDYSDVLVLVAAISEKVNVLVASKTKDI----HAGNLIKELAPIV-NGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N + +A V L Sbjct: 848 PDMAMAGGSNQAAIQELLAAVPEKL 872 >gi|295101950|emb|CBK99495.1| alanyl-tRNA synthetase [Faecalibacterium prausnitzii L2-6] Length = 886 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 340/913 (37%), Positives = 510/913 (55%), Gaps = 49/913 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R +L FF+ GH L S L+P NDP+L+ NSGM P K F QE+P V Sbjct: 4 TGLNELRDKYLTFFEGKGHLRLDSFPLVPKNDPSLLLINSGMAPMKKWFLAQEEPPRHRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FD 119 TT QKC+R D++ VG T RH TFFEMLGNFSF YFK+ I AW+ LT + Sbjct: 64 TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKKEVIPWAWEFLTSDEWMA 119 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + + RL+I+VY ED+EA+ +W K G++ D ++R+ DNFW +GPCGPCSEI+FD+ Sbjct: 120 IPKDRLHISVYKEDDEAYDIWTKKVGVAPDHMVRLGKEDNFWEHG-SGPCGPCSEIYFDR 178 Query: 180 GECIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 G G P G + +RY+EIWNLVF QF+ K L + +IDTGMGLER+A V+ Sbjct: 179 GPEYGCGKPTCGVGCDCDRYMEIWNLVFSQFDADGKGHYERLARPNIDTGMGLERLACVM 238 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N +++D + ++ E + G Y + ++ RVI DH+RS +F+++DGILP+NE Sbjct: 239 QGVGNLFEVDTVQSVLHHVEHIAGKTYGADPKEDISIRVITDHIRSCTFMVSDGILPSNE 298 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + R+LG + P ++ L+ + SAYPEL + I++ + +E+ Sbjct: 299 GRGYVLRRLLRRAARHGRMLGISRPFLVELVETVIQSSESAYPELREHDAYIKKVIGTEE 358 Query: 356 ERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F +T+D G+ +L+ ++ L K + +L G FKL DT G PLD+ ++I +G+ I Sbjct: 359 ANFARTIDAGMNILNNMIDGLEKAHEHLLKGLDVFKLNDTFGFPLDLTKEIAAEQGIE-I 417 Query: 414 DIISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F+ + +Q+ RARA L SG +E ++ +L + T+F+GYD L K D Sbjct: 418 DEEGFHAEMTKQKERARAERLKKNISGWSEDLFGTLTAE--PTEFVGYDTL------KSD 469 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V+ LT+ +++ E+A G V VV D+TPFYAE GGQ D G Sbjct: 470 SVVVALSDEETLTDAIATD-----------EQAKEG--VLVVLDKTPFYAEMGGQAADHG 516 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 G L++ DV+K +G +VH +E GI+ L +D + R ++ NH+ATHL Sbjct: 517 VITGAECVLRVQDVKKTPKGYYVHTCTLESGIVHVGDHLTARVDKEYRMAIARNHTATHL 576 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG HV Q GS FD TH +T EL ++ VND I +++ V + Sbjct: 577 LQAALREVLGDHVHQAGSYQDASITHFDFTHFSAVTPEELVRVQKIVNDKIFESMNVTVK 636 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M E+A GA AL G KY VRVV +E S+ CGGTHV +T +I IVS Sbjct: 637 EMPVEEAKKLGAMALFGEKYGKVVRVVDIEG-----WSTEFCGGTHVKNTAQIGGFKIVS 691 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKL- 770 ESS+ AGIRRIEA+TG+ Q+ L ++A+ LK + + R E + E + + Sbjct: 692 ESSVAAGIRRIEAVTGRNLLIRANMQEAMLHAVANTLKANNVAALPARAEAVMAENKAMS 751 Query: 771 -QLIHAKRKLQLN-VEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 +L K K+ + V L + + DV S + L+ + D ++ ++ + Sbjct: 752 KELEDIKAKVAASKVTSLFDNAETVGDVKIASAYFTGTSGDTLRGMCDTIRDNAKAAAVA 811 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 ++ + K ++ + VT+D + A +L + + GG GGG+P A +G + K Sbjct: 812 VLVGKSDDKITMAVTVTKDAQAKGLKAGNLVK-EISAIAGGKGGGKPDFAMAGLKDETKI 870 Query: 886 DQAIAGVASFLKK 898 D+A+A V ++K Sbjct: 871 DEALAAVKGIVEK 883 >gi|15903283|ref|NP_358833.1| alanyl-tRNA synthetase [Streptococcus pneumoniae R6] gi|116515613|ref|YP_816683.1| alanyl-tRNA synthetase [Streptococcus pneumoniae D39] gi|32171540|sp|Q8DPC7|SYA_STRR6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|122278431|sp|Q04JW5|SYA_STRP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|15458878|gb|AAL00044.1| Alanyl-tRNA synthetase [Streptococcus pneumoniae R6] gi|116076189|gb|ABJ53909.1| alanyl-tRNA synthetase [Streptococcus pneumoniae D39] Length = 872 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 344/925 (37%), Positives = 504/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y +Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ AVS ++F +T Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498 Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + I +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVDNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQPKIQELLDAVAGKL 872 >gi|223937386|ref|ZP_03629291.1| alanyl-tRNA synthetase [bacterium Ellin514] gi|223893937|gb|EEF60393.1| alanyl-tRNA synthetase [bacterium Ellin514] Length = 908 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 341/949 (35%), Positives = 507/949 (53%), Gaps = 115/949 (12%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ----A 60 S IR +FL+FF+ H ++PSSSL+P + P L+FTN+GM F IF GQ+K A Sbjct: 4 SQIRQSFLDFFKSKQHTIVPSSSLMP-DSPNLLFTNAGMNQFVPIFLGQKKADVSKWAGA 62 Query: 61 VTTV-------QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 V ++ QKC+RAGGKHNDL++VG HHTFFEMLGN+SFG YFK+ AI AW+L Sbjct: 63 VPSLDTRAADTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSFGDYFKKEAIDWAWEL 122 Query: 114 LTKEFDLDQRRLYITVY----------DEDEEAFKLWK-KISGLSADKIIRITT---NDN 159 +T+ + + RLY TVY D D+EA+ LW K S D + I DN Sbjct: 123 VTEVWRFPKERLYATVYSPDKSLGDPSDFDQEAYDLWAAKFSAAGLDPKVHIVNGNKKDN 182 Query: 160 FWSMAETGPCGPCSEIFFD---QGECIPGGL--PGSSEEGERYIEIWNLVFMQFEQQNKQ 214 FW M +TGPCGPCSE+ D QG+ G L G++E IEIWNLVF+QF Sbjct: 183 FWMMGDTGPCGPCSELHVDLTPQGDT-KGALVNKGTAE----CIEIWNLVFIQFNANPGG 237 Query: 215 ERFILPKMSIDTGMGLERMATVLQ----------EKTNNYDIDLFKHLIQASEQVTGMKY 264 LP +DTGMG ER+ +++Q K +NY+ D+F+ + A E+++G +Y Sbjct: 238 TFSPLPAKHVDTGMGFERVTSIMQGSHGFKDFANAKISNYETDIFRPIFDAIEKLSGKRY 297 Query: 265 EGNNI---------------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309 G+ + V RVI DH+R+ SF IADGI P N R YVLRRI+RRA+ Sbjct: 298 -GSTLPKSGSTGDTEQEKVDVAFRVIADHIRTLSFSIADGIQPGNTDRNYVLRRILRRAV 356 Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369 Y R LG+ EP L+ L MG +PE+ + K +++ +RSE+E F KTLDRG+ L Sbjct: 357 KYGRTLGFHEPFFYKLVDVLAETMGQVFPEIRERKQHVKDVIRSEEEAFNKTLDRGIELF 416 Query: 370 DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA 429 + ++H+ L G AFKLYDT+G PLD+ + + RGLA +D+ FN ++EQ+ R+ Sbjct: 417 NQEIAHVKPGHQLQGPFAFKLYDTYGFPLDLTELMARERGLA-VDVAGFNLLMDEQKKRS 475 Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS 489 +A + E I S E T+FIG+D L+ Sbjct: 476 QA------AQKKEVISLSQIETTVPTKFIGFDQLQA------------------------ 505 Query: 490 SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKK 549 + +++E K VV D + YAE GGQ+GDTG G ++ + QK Sbjct: 506 --------KTKVLEVVGLKDKTAVVLDTSSAYAEMGGQVGDTGELSQGGKLWRVENTQKS 557 Query: 550 AEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609 H + + +T + LT+D + R + +H+ TH+LH A+ ++ SQ G Sbjct: 558 GNTWL--HFLADGDAPQTGSEVELTVDRERRNAIQRHHTVTHILHWAIHEVVSREASQKG 615 Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALL 668 S + PD L FD +S+P+T ++ +E VN+ I +N V T +++ + Sbjct: 616 SFVGPDKLTFDF-NSQPLTPQQVADVEKLVNERILENAGVSWTEVLHADVKGRKDVMQFF 674 Query: 669 GTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 G KY DRVRVV + + G + +S LCGGTH TGEI L I+ ES++ AG+RRIEA+ Sbjct: 675 GDKYGDRVRVVQIGGKAGELNGYSMELCGGTHTQGTGEIGLFRIIGESAVAAGVRRIEAV 734 Query: 727 TGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVE 784 G A + + +KS+A + G + +++ + + ++L QL +K N Sbjct: 735 AGLEAYGKATDEIQLIKSIAGKVNAPIGELEKKIDALLAQQKELERQLKAVNQKEAANTA 794 Query: 785 DLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 K A +N + II + D L+S+ DAL+ + + G+++L G + A ++ Sbjct: 795 KSLIGKAATLNGIPAIIENLGSADGDTLQSIADALKGQFK-GVVVLGGAANGAVA-LVAS 852 Query: 842 VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 V+ + + A + + A ++ GG GGG+P A+ GG + +K D+A+A Sbjct: 853 VSPEFTAKVQAGKIIQGIAPIV-GGKGGGKPDNARGGGKDVSKLDEAMA 900 >gi|324999314|ref|ZP_08120426.1| alanyl-tRNA synthetase [Pseudonocardia sp. P1] Length = 886 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 343/919 (37%), Positives = 497/919 (54%), Gaps = 75/919 (8%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 F F++NGH +PS+SLI DP L+F N+GMV FK F G Y T++QKCVR Sbjct: 10 FTAHFERNGHTPVPSASLI-LEDPQLLFVNAGMVQFKPYFLGDVPAPYPRATSIQKCVRT 68 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LDQRRL 125 D+D VG+T RH TFF+M GNFSFG YFK AI+ AW L+T D D R+ Sbjct: 69 ----PDIDEVGKTTRHTTFFQMAGNFSFGDYFKRGAIEFAWSLITNSQDEGGYGFDPERI 124 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++TVY++D+EA LWK I+GL +I R +DN+W M GP GPCSEI++D+G G Sbjct: 125 WVTVYNDDDEAIALWKDIAGLPEQRIQRRGGDDNYWDMGVPGPGGPCSEIYYDRGPEF-G 183 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQER------FILPKMSIDTGMGLERMATVLQE 239 G + +RY+EIWNLVFMQ E+ + LP +IDTGMG+ER+A +LQE Sbjct: 184 AEGGPEADEDRYLEIWNLVFMQDERGELSPKKGHPPIGTLPHKNIDTGMGVERVAFLLQE 243 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N Y+ DL + +I +E+++G +Y N + V RVI DH RSS +I DG+ P NEGR Sbjct: 244 VNNVYETDLVRPVIAKAEELSGRRYGRNEEDDVRFRVIADHARSSMMIIGDGVTPGNEGR 303 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RR + ARLLG T P + + M YPEL I +R+E++ Sbjct: 304 GYVLRRLLRRIVRSARLLGVTGPCLGEFAAVVRDTMSPTYPELATDFERISAVIRAEEDT 363 Query: 358 FGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 F TL G + +G ++ G+ L GD AF+L+DT+G P+D+ ++ GLA +D Sbjct: 364 FRATLTAGEKIFEGAVAEARSTGR-TTLPGDQAFQLHDTYGFPIDLTLEMADEAGLA-VD 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F ++EQRSRA+A + G G + ++ ++ + +GAT F+GY L Sbjct: 422 RERFTALMDEQRSRAKADAAGRKVGFVDASVYRAVLDTHGATDFLGYQSL---------- 471 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 N S IV +++ G+ V A G +VEV+ D+TPFYAEAGGQ DTG Sbjct: 472 ------------NSESRIV-GLLRDGQTVPAAEQGDQVEVLLDRTPFYAEAGGQQADTGV 518 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G +++ DVQ G+ VH +V G + + +V +D R +S H+ATHL+ Sbjct: 519 LRGGSFEIRVDDVQSPVAGLRVHRGVVTAGTVTLDAEIVAEVDPARRSAISRAHTATHLV 578 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTR 652 H + LGS +Q GS P LRFD T + + A L IE+ VN ++ Q+ + T Sbjct: 579 HAGVRGALGSSAAQAGSLNAPGRLRFDFTSPTGAVDPAALVEIEEEVNSVLQQDREIQTY 638 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + + A GA L G KY DRVRVV D G +S LCGGTHV TGE+ L+ ++S Sbjct: 639 ETSMDSARKLGAMMLFGEKYGDRVRVV-----DMGDYSRELCGGTHVRRTGELGLVRVLS 693 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----------EE 762 E+SI +G+RR+EA+ G A H + + LA LK + R+ E Sbjct: 694 EASIGSGVRRVEALVGLDAFQHATTEHLLVNQLAEQLKARPEELPDRIQGLVERLRTAER 753 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI-- 820 E++R ++ + L EDL + V + +L+++ ++ K+ Sbjct: 754 DLEKHRADAVLASAGSLADAAEDLDGTALVAVTAPDGVA----GNDLRTLAADVRGKLGD 809 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSG 878 + G++ L ++ + K S ++ T+ D N V +L + GG GGG+P +AQ G Sbjct: 810 RPGVVALFAVA-DGKVSFVVATTKAARD--NGVAAGKLIPEFAAAVGGRGGGKPDLAQGG 866 Query: 879 GPNGNKADQAIAGVASFLK 897 G + D AI + S L+ Sbjct: 867 GTDPAGIDAAIQKLRSALR 885 >gi|182684342|ref|YP_001836089.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CGSP14] gi|205830229|sp|B2IQK0|SYA_STRPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|182629676|gb|ACB90624.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CGSP14] Length = 872 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 344/925 (37%), Positives = 504/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y +Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ AVS ++F +T Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498 Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + I +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAIAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|312277863|gb|ADQ62520.1| Alanyl-tRNA synthetase AlaS [Streptococcus thermophilus ND03] Length = 872 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 334/912 (36%), Positives = 508/912 (55%), Gaps = 72/912 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FDL + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDLPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGEE 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + E LP +IDTG GLER+A Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293 ++Q N++ DLF +I+ E+++G Y+ + ++ +VI DH+RS +F I DG LP Sbjct: 239 AIMQGAKTNFETDLFMPIIREIEKMSGKAYDPDGETLSFKVIADHIRSLAFAIGDGALPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K IE+ ++ Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIVKR 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+E F +T+D G +LD +L++L GKD + D+ FKLYDT+G P+++ +++ G Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDI-FKLYDTYGFPVELTEELAEDEGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F A++EQ+ RARA + GS G ++ S+F+ Sbjct: 418 K-IDHEGFKAAMKEQQDRARASVVKGGS-------------MGMQNETLANITEPSEFLY 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 E S + IV + ++V+ K +VF+QTPFYAE GGQ+ D Sbjct: 464 E-------------AETAESRLSVIVAD-DARHDSVNSGKALLVFEQTPFYAEMGGQVAD 509 Query: 531 TGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G A G + ++ DVQ+ G +H VE G L + L ID+ R ++ NH Sbjct: 510 HGTISDAAGTTV-ARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHSRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G+H Q GS + LRFD TH + +T EL++IE+ VN+ I + Sbjct: 568 TATHLLHAALHNIVGNHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + + A + GA AL G KY RVRVVS+ G +S LCGGTHV++T EI + Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKRVRVVSI-----GDYSVELCGGTHVANTAEIGM 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A +++ LKS+A+ LK Q V +V + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKSIAATLKAPQLKEVPNKVASLQEQ 742 Query: 767 YRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKKIQ 821 LQ +A K K + + N + +I S+V+ + L++ D ++ Sbjct: 743 LHALQKENATLKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSAAGALRTFADQWKQADY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++L +EK ++ +E++ +A +L ++ A ++ G GGG+P MA +GG + Sbjct: 803 SDVLVLAAHIREKVNVLVASKSENV----HAGNLIKVLAPIV-SGRGGGKPDMAMAGGSD 857 Query: 882 GNKADQAIAGVA 893 N ++ VA Sbjct: 858 ANSIQDLLSAVA 869 >gi|158337563|ref|YP_001518738.1| alanyl-tRNA synthetase [Acaryochloris marina MBIC11017] gi|205829961|sp|B0CFX4|SYA_ACAM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|158307804|gb|ABW29421.1| alanyl-tRNA synthetase [Acaryochloris marina MBIC11017] Length = 873 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 336/898 (37%), Positives = 514/898 (57%), Gaps = 57/898 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR TFL+F+ GH++LPS+SL+P DPT++ T +GM+PFK IF GQ + TT Sbjct: 8 AQIRQTFLDFYAAKGHKILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQREAEVPRATTS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVG+T RHHT+FEMLGNFSFG YFKE+AI AW+L T+ + L R Sbjct: 67 QKCIRT----NDIENVGQTARHHTYFEMLGNFSFGDYFKEQAIAWAWELSTEVYKLPPER 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 + +V++ED+EAF +W+ G+ +I R+ DNFW+ TGPCGPCSE+++D P Sbjct: 123 IVPSVFEEDDEAFAIWRDKIGIPEHRIQRMGAEDNFWASGPTGPCGPCSELYYD---FYP 179 Query: 185 --GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G E+ R+IE +NLVFM++ + + + L +IDTG+GLERMA +LQ N Sbjct: 180 EKGDDKIDLEDDTRFIEYYNLVFMEYNRDSDGKLAPLKNKNIDTGLGLERMAQILQGVPN 239 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I+ + ++ G+KY+ + +V+ DH+RS +IADGI +N GRGY Sbjct: 240 NYETDLIFPIIETAAKIAGIKYKKSKAKTKTSLKVVGDHVRSVVQMIADGITASNVGRGY 299 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + + +L+G + + + AYPE+ + + +I+ L E+ +F Sbjct: 300 VLRRLIRRVVRHGQLIGIDGAFITQVAETAIASLEVAYPEVREREKIIKTELEREEAQFL 359 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 KTL+RG LL +++ K + ++G AF LYDT+G PL++ Q+I +GL +D F Sbjct: 360 KTLNRGEKLLGEIMAK--KPKQISGKDAFDLYDTYGFPLELTQEIAAEQGLT-VDEDGFA 416 Query: 420 QALEEQRSRAR-AH-SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 +A++EQ+ R R AH ++ L T + L T F+GY Sbjct: 417 KAMKEQQDRGRSAHKTIDL---TVQSALEQLAATVHPTDFLGY----------------- 456 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 D + + V A++ +GE V++A +G +V++ DQTPFYAE+GGQ+GD G G Sbjct: 457 ----TDFS--AKAKVAALLVKGETVDQASAGSEVQIALDQTPFYAESGGQIGDRGYLNGK 510 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + ++I DVQK+++ IF+H+ +ERG L L ID RRQ+ +H+ATHLL AL Sbjct: 511 DVVVRIEDVQKESD-IFIHYGRIERGTLEVGDKLTAQIDLACRRQVQAHHTATHLLQAAL 569 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 I+ + Q GS + D LRFD +++ +T +++ IE +N IA+ T +M Sbjct: 570 KNIVDESIGQAGSLVAFDRLRFDFNYNQAVTPEQIQEIETQINTWIAEAHTTETEVMPIA 629 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 +A A GA A+ G KY VRV+ V GV S LCGGTHV +T EI L IV+E+ + Sbjct: 630 EAKAKGAVAMFGEKYGAEVRVMDVP----GV-SMELCGGTHVKNTSEIGLFKIVTEAGVA 684 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEAI G +L +D ++ L+ K + R+ + + + Q Sbjct: 685 SGVRRIEAIAGPAVLEYLNVRDAVVRDLSDRFKAKPEELPERITTLQADLKTAQKQLDTL 744 Query: 778 KLQLNV---EDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K QL + E L +V + + VDS+ LK+ L +K+ G ++L + Sbjct: 745 KAQLALVKSEQLLDQAEPAGEVKVLVSQLEGVDSESLKTAAGRLLQKLGEGAVVLGSVPA 804 Query: 833 EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K S++ + ++++ A AK GGGGGGRP++AQ+GG + +K A+ Sbjct: 805 EGKVSLVAAFSPKVIEQGLQAGKFVGAIAKQC-GGGGGGRPNLAQAGGRDPSKLADAL 861 >gi|297195516|ref|ZP_06912914.1| alanyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486] gi|297152826|gb|EDY66040.2| alanyl-tRNA synthetase [Streptomyces pristinaespiralis ATCC 25486] Length = 854 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 336/902 (37%), Positives = 495/902 (54%), Gaps = 93/902 (10%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SLI +DPTL+ +GMVPFK F G+ KP VT+V Sbjct: 4 AEIRRRWLSFFEERGHTVVPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI+LAW+LLT + Sbjct: 63 QKCVRT----PDIEEVGKTTRHGTFFQMCGNFSFGDYFKEGAIKLAWELLTSSVADGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ +L+ITVY ED+EA ++W+ + G+ A++I R+ NFWSM GPCGPCSEI +D+ Sbjct: 119 LEPEKLWITVYQEDDEAEQIWRDVIGVPAERIQRLGMGPNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEG------ERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTG 227 G P EEG ERY+EIWNLVFMQ+E+ + K++ IL P +IDTG Sbjct: 179 G-------PEFGEEGGPAVNDERYVEIWNLVFMQYERGAGEGKEDFPILGDLPSKNIDTG 231 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFL 285 +GLER+A +LQ N Y+ D + ++ + ++TG++Y + + V+ RV+ DH+R+S+ L Sbjct: 232 LGLERLAMILQGVQNMYETDTLRVVMDKATELTGVRYGADHGSDVSLRVVADHIRTSTML 291 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG+ P NEGRGYVLRRIMRRA+ RL+G T P++ L+ + MG YPELI + Sbjct: 292 IGDGVTPGNEGRGYVLRRIMRRAIRNMRLMGATGPVVKDLVDVVIDTMGLQYPELITDRK 351 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQD 403 IE +E+ F K L G +LD ++ +L GD AF L+DT G P+D+ + Sbjct: 352 RIETVALAEEAAFLKALKGGTNILDTAVTETKAKGGTVLPGDKAFLLHDTWGFPIDLTLE 411 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDL 462 + +GL+ +D F + ++EQR RA+A + +G + + + G T+F GY Sbjct: 412 MAAEQGLS-VDEDGFRRLMKEQRDRAKADAKAKKTGHANLSAYREIADSSGNTEFTGYTS 470 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 T G S++V +V G A G +VEVV D+TPFYA Sbjct: 471 ----------------------TEGESTVVGLLVD-GVSSPAASEGDEVEVVLDRTPFYA 507 Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQL D G + G +Q+ DVQ+ G+ VH +V+ G + S ID + RR Sbjct: 508 EGGGQLADQGRIKLHSGAVIQVRDVQQPVPGVSVHKGVVQVGEVTVGASAYAVIDVRRRR 567 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ HSATHL H AL LG +Q GS +P RFD + L +E +N+ Sbjct: 568 AIARAHSATHLTHQALRDALGPTAAQAGSENSPGRFRFDFGSPNAVPGTVLTDVEQKINE 627 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 ++A+ L V +M+ ++A GA A G KY +RVRVV++ G S LCGGTHV + Sbjct: 628 VLARELDVHAEVMSIDEAKKQGAIAEFGEKYGERVRVVTI-----GDFSKELCGGTHVHN 682 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T ++ L+ ++ ESSI +G+RR+EA+ G A + L + + L +K GR E Sbjct: 683 TAQLGLVKLLGESSIGSGVRRVEALVGVDAYNFLAKEHTVVAQLQELVK-------GRSE 735 Query: 762 EIWEEYRKLQLIHAKRK-LQLNVEDLSCHKIA-----------DVNFMSHIISEV----D 805 E+ E K+ + K K + +E K+ DV ++ + V Sbjct: 736 ELPE---KIAAMLGKLKDAEKEIEKFRAEKVLGAAAGLAQGAKDVRGVALVTGTVPDGTS 792 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKV 862 + +L+ ++ ++ +I +V + L V+ + R A DL R +AK Sbjct: 793 ADDLRKLVLDVRGRIPGDRPAVVAVFTTANGRPLTVIATNEAARERGLKAGDLVRTAAKT 852 Query: 863 LG 864 LG Sbjct: 853 LG 854 >gi|299141813|ref|ZP_07034948.1| alanine--tRNA ligase [Prevotella oris C735] gi|298576664|gb|EFI48535.1| alanine--tRNA ligase [Prevotella oris C735] Length = 886 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 332/922 (36%), Positives = 500/922 (54%), Gaps = 99/922 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R ++ +FF+ GH+++ S+ ++ +DPTLMFTN+GM +K+I G + P + V Sbjct: 3 ANEVRESYKKFFEGKGHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPG-KDVRR 61 Query: 64 V--QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L L+ Sbjct: 62 VDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVSVLHLN 121 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 LY+TV+ + D+EA W K + AD II +DNFW M +TGPCGPC+ Sbjct: 122 PEDLYVTVFEGSPEEGLERDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCGPCT 179 Query: 174 EIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + +PG +++ + IEIWN+VFMQ+ ++ LP IDTGMG Sbjct: 180 EIHVDSRTPEEKAKMPGRELVNKDNPQVIEIWNIVFMQYNRKADGSLEPLPMHVIDTGMG 239 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVNHRV 274 ER+ +LQ+K +NYD D+F+ +I+ E ++G KY EG + + RV Sbjct: 240 FERLVRMLQDKHSNYDTDIFQPIIKQIEAISGKKYGFTTPTGLNGEGKDEQEKIDIAMRV 299 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEM 333 + DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L E + LLP L EM Sbjct: 300 VADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLLPVLVQEM 359 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKL 390 G AYPEL + LI ++ E++ F +TL++G+ LL+G + L G+ E L+G AF+L Sbjct: 360 GQAYPELSAQQELIARVMKEEEDSFLRTLEKGINLLNGDMDELKAHGQTE-LDGTSAFRL 418 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 +DT+G PLD+ + ++C +D FN+ + +Q++RAR ++ + +G W ++E Sbjct: 419 FDTYGFPLDLTE-LICREHGYTVDEKGFNEEMAKQKARARNAAV-VENGD----WEVIRE 472 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 G F+GYD + + RKV +K Sbjct: 473 --GEQVFVGYDYTEYTCHILRYRKVTQKKNTF---------------------------- 502 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 E+V D TPFY E GGQ+GD G + + ++I D K+ +H IV++ + Sbjct: 503 YEIVLDYTPFYGEMGGQVGDQGTLVSENETVEIIDT-KRENNQSIH--IVKQLPKDLQAE 559 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +D + R + NH+ATHLL +AL +LG HV Q GS + P LRFD +H + +T Sbjct: 560 FMACVDVEKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDPTTLRFDFSHFQKVTEE 619 Query: 631 ELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL+ +E VN +I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 620 ELRQVEKLVNKMIREDFPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFG------P 673 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF- 748 S CGG H STG I I+SESS+ AGIRRIEA+TGQ + + + L S Sbjct: 674 SCEFCGGIHAKSTGRIGFFKIISESSVAAGIRRIEALTGQACEDTIYALQDMMNDLKSMF 733 Query: 749 -----LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI--I 801 LK + +G +E+ +E K Q +R E+L + +VN + I + Sbjct: 734 NNSKDLKATLKKFIGEHDEMRKEIEKFQAQAVER----TKEEL-LKRAQNVNGVQVIKAV 788 Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLS 859 ++ K + L++ I +++++G + K + ++ ++D++ NA + + Sbjct: 789 LPLEPAAAKDLAFKLRENISENLVVVIGSTAGNKPLLTVMFSDDMVKDHSLNAGTIIHEA 848 Query: 860 AKVLGGGGGGGRPHMAQSGGPN 881 AK++ GGGGG+PH AQ+GG N Sbjct: 849 AKLI-QGGGGGQPHYAQAGGKN 869 >gi|210135400|ref|YP_002301839.1| alanyl-tRNA synthetase [Helicobacter pylori P12] gi|210133368|gb|ACJ08359.1| alanyl-tRNA synthetase [Helicobacter pylori P12] Length = 847 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 319/833 (38%), Positives = 471/833 (56%), Gaps = 56/833 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL+FF+ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG +P + Q Sbjct: 3 IRNEFLQFFKNKGHEIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGMVPRPSIPRAASSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L+ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMGEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFELC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++EQ R++A G + + ++ Y +F+GY+ C P Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFVGYETTE------------C---P 457 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 S K I EA Q+V V+ ++TPFYAE GG +GD G Sbjct: 458 AKALGFFDSDFKEIT-------EANPNQEVWVLLEKTPFYAEGGGAIGDRGTLFKGNEEA 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 I K G+ +++ + + + + D R +++ +HSATHLL AL +L Sbjct: 511 AIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + LRFD +H+K + EL+ +ED+VN I ++L M A Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDSVNAQIFKHLNSQVEHMPLNQAKD 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL KY + VRVVS +++ + LCGG HV +TG I IV ES + +G+R Sbjct: 629 KGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVSSGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ G+ ++++LK+ + LK +V+ + ++ E + Q K + + Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KAPVSM 737 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 DL KI VN + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 738 ---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784 >gi|110637850|ref|YP_678057.1| alanyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406] gi|123058839|sp|Q11V49|SYA_CYTH3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110280531|gb|ABG58717.1| alanyl-tRNA synthetase [Cytophaga hutchinsonii ATCC 33406] Length = 877 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 321/916 (35%), Positives = 511/916 (55%), Gaps = 82/916 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF GH+++PS+ ++ NDPTLMFTN+GM FK+ F G E P Y+ + Sbjct: 4 AEIRQQFLDFFASKGHQIVPSAPIVNKNDPTLMFTNAGMNQFKDYFLGNETPKYRRIADT 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI +W+LLT + L + R Sbjct: 64 QKCLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKEEAIAWSWELLTSVYKLPKDR 123 Query: 125 LYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LY+T+++ D+ EA+ WKK ++ D+I+ DNFW M E GPCGPCSEI Sbjct: 124 LYVTIFEGDDKEKLARDTEAYNFWKK--WIAEDRILLGNKKDNFWEMGEQGPCGPCSEIH 181 Query: 177 FD-----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 D + + + G +++ + +EIWN VF+QF ++ LP +DTGMG E Sbjct: 182 VDLRTDEEVKAVDGKTLVNNDHPQ-VVEIWNNVFIQFNRKADGSLEELPDKHVDTGMGFE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289 R+ +Q+K +NYD D+F +I + G+KY + + RV+ DH+R+ SF+IADG Sbjct: 241 RLCMAIQKKKSNYDTDVFTPMIDFVAKAAGIKYGADEKTDIAMRVMADHIRAISFVIADG 300 Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+N GYV+RRI+RRA+ YA L EP + L+ L ++ +PEL + + Sbjct: 301 QLPSNNKAGYVIRRILRRAVRYAYTFLNLKEPFLYKLVAVLADQLAHVFPELKSQQDFVA 360 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + ++ E+ F +TLD GL L+ + L K ++G AF+LYDT G PLD++Q I Sbjct: 361 KVVQEEEISFLRTLDIGLSKLEQIREELKAKKATTIDGKTAFELYDTFGFPLDLIQLIAR 420 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD-LLRG 465 GL +D F+ + Q+ R++ + + E +++ + +F+GYD L+ Sbjct: 421 ENGLT-VDEAGFDTEMAAQKQRSKK------AASVETSDWTIVTEDDEVEFVGYDHLIST 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S+ +K + + +G+ + ++V D TPFYAE+G Sbjct: 474 SRIIK---------------------YRQVKTKGK--------DQYQLVLDTTPFYAESG 504 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ GDTG + ++++ + K+ + +H I E+ + + ++ R Sbjct: 505 GQAGDTGTLVQGDKKIKVLNTVKE-NNLIIH--ITEQLPADLKAPVDCKVNVLQRSLTEN 561 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH AL +LGSHV+Q GS + LRFD +H +T ELK +E VN+ I + Sbjct: 562 NHSATHLLHAALKQVLGSHVNQKGSLVNESVLRFDFSHFSKVTEEELKKVELIVNEKIRE 621 Query: 646 NLPVVTRI-MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N+ + R + E+A GA AL G KY + VR+++ ++D S LCGGTHVSSTG+ Sbjct: 622 NISLNERRNVPIEEAKKLGAMALFGEKYGEYVRMIT--FDDS--FSRELCGGTHVSSTGK 677 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I I SESS+ AG+RRIEA+T A + Q L + +K + ++V +E++ Sbjct: 678 IGFFKITSESSVAAGVRRIEALTATAAEVFVDEQQTTLAKITELMK-NPKDLVKSLEDLL 736 Query: 765 EEYRKLQ------LIHAKRKLQLNVEDLSCHKIADVNFMSH--IISEVDSKELKSVMDAL 816 EE LQ + + +++D + K+ D+N + ++ VD+ ++ V L Sbjct: 737 EERIVLQKQLDEYQAEKSKAIAKSLKD-TVEKVGDINVIRAKLVLPSVDA--MRQVAYDL 793 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DR-FNAVDLARLSAKVLGGGGGGGRPHM 874 ++ + + +++++ ++ + K ++ ++++++L+ D+ NA + R +K + GGGGG+P Sbjct: 794 KQTVDN-LLLVLAVNVDGKPNIAVMISDNLVADKGLNASQMIRELSKEI-QGGGGGQPFY 851 Query: 875 AQSGGPNGNKADQAIA 890 A +GG N D+ IA Sbjct: 852 ATAGGKELNGLDKVIA 867 >gi|213963758|ref|ZP_03392008.1| alanyl-tRNA synthetase [Capnocytophaga sputigena Capno] gi|213953638|gb|EEB64970.1| alanyl-tRNA synthetase [Capnocytophaga sputigena Capno] Length = 877 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 344/924 (37%), Positives = 506/924 (54%), Gaps = 86/924 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ GH ++PS+ ++ NDPTLMFTN+GM FK F G KP ++ V QK Sbjct: 6 IRNLFLKFFESKGHTIVPSAPMVIKNDPTLMFTNAGMNQFKEFFLGHAKPKHKRVADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VGR HHT FEMLGN+SFG YFK AI AW+LLT+ + + + LY Sbjct: 66 CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAISWAWELLTEIYKIPKENLY 125 Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF- 177 +TV++ D+EAF +WK+ ++ D I+ DNFW M + GPCGPC+EI Sbjct: 126 VTVFEGSEEDGVPFDQEAFDIWKE--RIAEDHILLGNKKDNFWEMGDQGPCGPCTEIHVD 183 Query: 178 ---DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 D+ + G + + + IEIWN VFM+F ++ LP ++DTGMG ER+ Sbjct: 184 IRSDEEKAKVAGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---------RVIVDHLRSSSFL 285 VLQ K +NYD D+F LI E++T Y N V RVI DH+R+ +F Sbjct: 244 MVLQNKQSNYDTDVFTPLIHKVEEITKSHYNSNGRVTPEQEQVNIAIRVISDHIRAVAFA 303 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG+ +PEL + + Sbjct: 304 IADGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLAAQMGATFPELEKQQ 363 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 LI ++ E+ F +TL++GL++LD V+ D+ L+G AF+LYDT+G P D+ I Sbjct: 364 FLIMSVIKEEEASFLRTLEQGLLMLD-VMIQNSPDKQLSGGKAFELYDTYGFPKDLTALI 422 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L +GL +D F L++Q+ R+RA + W L++ +FIGYD L Sbjct: 423 LSEKGLT-MDEEGFEVQLQKQKERSRA-----AAQVKTDDWVVLRDD-DEEEFIGYDTLE 475 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + R+V QK G ++VF+ TPFY E Sbjct: 476 AVVRLVKYRRVESQK---------------------------DGTHFQLVFNTTPFYPEG 508 Query: 525 GGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS--LVLTIDYQNRR 581 GGQ+GD G +G + I D KK + +H I E L TE++ + R Sbjct: 509 GGQVGDKGTLQAANGELIYILDT-KKENNLIIH--IAEH--LPTELNDPFKAEVHLVARE 563 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 NHSATHLLH AL +LG+HV Q GS + P+ LRFD +H +TS ELK +E VN Sbjct: 564 MAEANHSATHLLHQALREVLGTHVEQKGSRVAPEALRFDFSHFAKLTSDELKEVERLVNK 623 Query: 642 IIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I + +P+ R + + A+ SGA AL G KY DRVR+ +++ D S LCGGTHV Sbjct: 624 RIFEKIPLQEHRNIPIQQAVESGAMALFGEKYGDRVRM--IQFGD----SKELCGGTHVK 677 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +TG+I I+SE ++ AGIRRIEAIT A + + Q++ ++ + +K +Q + V + Sbjct: 678 NTGDIWFFKIISEGAVAAGIRRIEAITRGGAMQYFIEQEQLVERIKETVKNTQ-DPVKAI 736 Query: 761 EEIWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMD 814 + EE +R+L+ + ++ QL +L + ++N + +I +VD++ LK + Sbjct: 737 THLQEENAALHRELEQLKKEQAKQLKA-NLKA-EFTEINAIQCLIKQVDAEVATLKDLAF 794 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRP 872 L +++ + +E KA +L + ++L +A + R K + GGGGG+P Sbjct: 795 ELGNEVKDAFVFFASAHEEGKALLLCYINKELAQAKGLDAGKIVRELGKYI-HGGGGGQP 853 Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896 A +GG +A+ V FL Sbjct: 854 FFATAGGKKPEGIAEALFKVKDFL 877 >gi|149369737|ref|ZP_01889589.1| alanyl-tRNA synthetase [unidentified eubacterium SCB49] gi|149357164|gb|EDM45719.1| alanyl-tRNA synthetase [unidentified eubacterium SCB49] Length = 872 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 340/920 (36%), Positives = 491/920 (53%), Gaps = 78/920 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FLEFF+ H ++PS+ ++ +DPTLMF NSGM PFK F G +P +T Sbjct: 3 ANEIRAAFLEFFESKKHSIVPSAPMVLKDDPTLMFVNSGMAPFKEFFLGNAQPKNTRLTD 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT+ +D+ Sbjct: 63 SQKCLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKEEAIAWAWELLTEVLKIDKD 122 Query: 124 RLYITVYD---------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 LY+TV++ D EA+ +WKK ++ D+I++ DNFW M + GPCGPCSE Sbjct: 123 MLYVTVFEGSDDADNLKMDTEAYDIWKKY--IAEDRILKGNKKDNFWEMGDQGPCGPCSE 180 Query: 175 IFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 I D + + G + + + +EIWNLVFMQ+ ++ ILP IDTGMG Sbjct: 181 IHVDIRSAEEKAAVDGKSLVNMDHPQVVEIWNLVFMQYNRKANGTLEILPNKHIDTGMGF 240 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+ VLQ+ +NYD D+F +I+ E +T +Y + ++ RVI DH+R+ +F IAD Sbjct: 241 ERLCMVLQDVKSNYDTDVFTPIIREIETITDTEYGKDEKIDIAIRVISDHVRAVAFSIAD 300 Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 G LP+N G GYV+RRI+RRA+ Y L EP + L+ L ++MG A+PE+ K LI Sbjct: 301 GQLPSNNGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVTVLVSKMGEAFPEIKSQKQLI 360 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 E ++ E+ F +TLD+GLVLLD ++ ++G F+L DT+G P D+ IL Sbjct: 361 ENVIKEEESSFLRTLDQGLVLLDRMIEGQKGSTEISGAKVFELKDTYGFPEDLTDLILRE 420 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +G F Q L EQ++R + S + W L + +F+GYD L + Sbjct: 421 KGYT-YSKEEFEQKLAEQKARGKE-----ASESKNDDWTILLDD-AEEEFVGYDRLSANV 473 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + RKV +K G+ ++VF+ TPFY E GGQ Sbjct: 474 KLTRYRKVTSKK---------------------------DGEMYQLVFNLTPFYPEGGGQ 506 Query: 528 LGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 +GD G G L I D +K+ I + + T +D +R ++ N Sbjct: 507 VGDKGYVQAPGGDVLYILDTKKENNVIIHFTKNLPNNLTET---FKAQVDENHRFRIECN 563 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHLLH L ILG+HV Q GS + LRFD +H +T+ EL+ +ED VN IA Sbjct: 564 HSATHLLHQGLREILGTHVEQKGSSVHSKYLRFDFSHFSKVTAEELQEVEDFVNARIAGR 623 Query: 647 LPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 L R + E+AIA GA AL G KY D VR V S LCGGTHV +T +I Sbjct: 624 LDFEEKRAVPMEEAIAEGAMALFGEKYGDAVRTVRFG------QSIELCGGTHVKNTADI 677 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 I SES++ +G+RRIEAIT ++H D+ + S L ++ V +E+I Sbjct: 678 WHFKIKSESAVASGVRRIEAITNHALKNHFSDNDKAFSEVKSLLNNTKKPVEA-IEKIQA 736 Query: 766 EYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQK 818 E +L QL+ K K N++ ++I ++N + + E +D+ LK + L Sbjct: 737 ENSELKKQIEQLLKDKAK---NIKGDLKNQIVEINGANFLAKELDLDAGGLKDLAFELGG 793 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 +I++ + +L G KA + + +DL NA + R K + GGGGG+P A Sbjct: 794 EIEN-LFILFGSKAGGKALLTCYIDKDLAKEKDLNAGTIVRELGKHI-QGGGGGQPFFAT 851 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG N ++A+ V +++ Sbjct: 852 AGGKNPEGIEKALEAVKAYI 871 >gi|87300751|ref|ZP_01083593.1| alanyl-tRNA synthetase [Synechococcus sp. WH 5701] gi|87284622|gb|EAQ76574.1| alanyl-tRNA synthetase [Synechococcus sp. WH 5701] Length = 896 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 341/921 (37%), Positives = 505/921 (54%), Gaps = 91/921 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL F++ GH + S+SL+P +DPT++ T +GM+PFK +F GQ +P T+ Sbjct: 19 AEIREAFLAFYEARGHRRMASASLVP-DDPTVLLTIAGMLPFKPVFLGQAEPPSPRATSS 77 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK A+ AW+L TK F LD + Sbjct: 78 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKTEAMTWAWELATKVFGLDPKH 133 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ +D+EA +W+ G+ +I+R+ DNFW TGPCGPCSEI++D + Sbjct: 134 LVVSVFRDDDEAAVIWRDTVGVDPRRIVRLGEADNFWVSGPTGPCGPCSEIYYDFKPEL- 192 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFMQF + + L +IDTG+GLERMA +LQ NNY Sbjct: 193 GVEHLDLEDDSRFIEFYNLVFMQFNRDAEGNLTPLENRNIDTGLGLERMAQILQGAANNY 252 Query: 245 DIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL LI+ + + G+ Y + + +VI DH R+ + LIADG+ +N GRGY+L Sbjct: 253 ETDLIYPLIETAATLAGVNYRQLDARGQTSLKVIGDHSRAITQLIADGVTASNLGRGYIL 312 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG T P + + A M AYP+L++ + I L E+ RF +T Sbjct: 313 RRLLRRVVRHGRLLGITTPFLTAMGEAAIALMVDAYPQLVERRDAIMAELAREEARFLET 372 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL VLS G +I +G+ AF+LYDT+G PL++ ++I GLA +D+ F A Sbjct: 373 LERGEKLLAEVLS-AGPSQI-SGEQAFELYDTYGFPLELTEEIAEEHGLA-VDLAGFEAA 429 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +E QR RA+A S+ L T + ++ E+ AT F GY+ L + P Sbjct: 430 MEAQRQRAKAASVRLDL-TLQGAIEAMAEQLPATDFRGYEAL--------------EHP- 473 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG--- 538 S V A+V GE + A +G V++V D TPFY E+GGQ+GD G G Sbjct: 474 --------SQVMALVVNGEPAQGARAGDAVQIVLDSTPFYGESGGQIGDRGVLAGGAPGA 525 Query: 539 -------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 +R++ Q+K + VHH +ERG L ++ +D RR++ +H+ATH Sbjct: 526 GAEAGVIVRIEAVSHQRK---LIVHHGRIERGELALGDTVTALVDRACRRRVQAHHTATH 582 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 LL AL ++ ++Q GS + + LRFD I+ +L+ IE+ +N IA + Sbjct: 583 LLQAALKQLVDPSIAQAGSLVDFERLRFDFHCPHAISPEDLERIEERINGWIADAHALEV 642 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 R M E A ++GA A+ G KY D VRVV V GV S LCGGTHV++T EI L IV Sbjct: 643 REMELERARSAGAVAMFGEKYADIVRVVDVP----GV-SMELCGGTHVANTAEIGLFRIV 697 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 SES + AGIRRIEA+ G +L +D +++L KV G ++ RV + +E + Sbjct: 698 SESGVAAGIRRIEAVAGPAVLDYLKERDTVVRALGDRFKVQPGEILERVSGLQDELKAAS 757 Query: 772 LIHAKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGI----- 824 A + +L + S +V +++ +D E ++ A Q ++Q G+ Sbjct: 758 RALAAARSELALARASALATGALEVGAFRVLVARLDGVEGAALQTAAQ-QLQEGLGSAAA 816 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG-------------- 870 ++L G+ ++ + L++V A A+V+ G G Sbjct: 817 VVLGGLPAPEEPAKLVLV-------------AAFGAEVIAAGPKAGSFIAVVAKRCGGGG 863 Query: 871 --RPHMAQSGGPNGNKADQAI 889 RP +AQ+GG + D A+ Sbjct: 864 GGRPQLAQAGGRDAASLDPAL 884 >gi|322391767|ref|ZP_08065232.1| alanine--tRNA ligase [Streptococcus peroris ATCC 700780] gi|321145247|gb|EFX40643.1| alanine--tRNA ligase [Streptococcus peroris ATCC 700780] Length = 872 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 349/927 (37%), Positives = 512/927 (55%), Gaps = 86/927 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP Sbjct: 1 MKQLSSAQIRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWVEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGG-----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPDHIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L +++G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKAKGQSVIDGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ ID F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-IDRDGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESHFNYNASQ--- 467 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 +SS + AIV V EAVS ++F +TP Sbjct: 468 ----------------------------LSSKLVAIVADNTEV-EAVSEGTASLIFAETP 498 Query: 520 FYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G A+G+ + +TDVQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDAVGN-VVANVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++IE Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + + + T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEAIAIKTIETDIDTAKEMGAMALFGEKYGKNVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV++T EI L IV E I +G RRI A+TG+ A Q++ LK A+ LK Q Sbjct: 672 THVANTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYRQQEDALKVAAAALKAPQLKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQ---LNVEDLSCHKIADVNFMSHIISEV---DSKEL 809 V +VE + E+ ++LQ +A+ K + + D+ H + + N S I S+V D+ L Sbjct: 732 VPHKVEALQEQVKQLQKENAELKEKAAAVAAGDVFKH-VQEANGHSFIASQVSVSDAGAL 790 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 ++ D ++K S +++LV +K ++ T+D+ +A ++ + A ++ G GG Sbjct: 791 RTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNVVKELASIV-DGRGG 845 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 G+P MA +GG N K + + VA L Sbjct: 846 GKPDMAMAGGSNQAKIQELLDAVADKL 872 >gi|262527560|sp|B1HUK4|SYA_LYSSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 908 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 336/929 (36%), Positives = 501/929 (53%), Gaps = 87/929 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +LEFF++ GH PS+ L+P NDP+L++ NSG+ K F G+ P +T QK Sbjct: 27 IRQMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRVIPDNPRITNAQK 86 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT K D Sbjct: 87 SIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMGFDPEL 142 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180 L IT++ ED+EA+ +W + G+ +++IR+ NFW + E GP GP SEIF+D+G Sbjct: 143 LSITIHPEDQEAYDVWHQEIGIPEERLIRL--EGNFWDIGE-GPSGPNSEIFYDRGVEYG 199 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E P PG E ERY+EIWNLVF QF LPK +IDTGMGLER+ +V+Q Sbjct: 200 SDENDPEMYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQ 257 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRSSSF 284 N+D DLF +I+ E+ KY+ + V+ +VI DH+R+ +F Sbjct: 258 NVPTNFDTDLFMPIIEKIEEFANRKYKRPSEVDLNEIFGSEEDINTPFKVIADHIRTVAF 317 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGYVLRR++RRA+ YA+ +G +P M L+P + M YPE+ + Sbjct: 318 AIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVTEKC 377 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIM 401 I+ +++E+ RF +TLD GL + + V G D I D AF+LYDT+G P+++ Sbjct: 378 EFIQRVIKNEEIRFHETLDGGLAIFNEVAESQKAAGHDFIPGAD-AFRLYDTYGFPIELT 436 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 ++ G+ +D F A+EEQR RARA + S + L A++F+G+D Sbjct: 437 EEYAEEVGMK-VDHEGFETAMEEQRERARAARQDVDSMQVQNE--VLANLTVASEFVGFD 493 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L + + + A++ G++ + A GQ+ V+ +TPFY Sbjct: 494 TLVAN-----------------------TEIAAMIVNGQVEKVASEGQEALVILAKTPFY 530 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE GGQ+ D+G D + DVQK G +H IVE G + E ++ + +R Sbjct: 531 AEMGGQIADSGIISNDSFTAVVKDVQKAPNGQPLHTVIVESGEMHVEDAVQAIVHRDDRN 590 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATH++ AL +LG HV+Q GS + PD LRFD +H +T EL+ IE VN+ Sbjct: 591 LIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIVNE 650 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + ++ VV M + A A GA AL G KY D VRVVS+ G +S LCGG HV Sbjct: 651 KVWDDIEVVIEEMAIDQAKAKGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHVKR 705 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 + EI IVSE I AG RRIEA+TG+ A + ++ L A+ LK + ++V +V+ Sbjct: 706 SSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEVVKEEEALLNDAAALLKANPKDIVTKVQ 765 Query: 762 EIWEEYRKLQL-----------IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 + +Y++LQ H+ + + + CH +F D+ L+ Sbjct: 766 ALQGDYKELQRDNEALSQKIANAHSWGNCRCSTNNWRCHS----SFYKS--RSKDNNLLR 819 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN--AVDLARLSAKVLGGGGG 868 +MD L+ + +I+L + + ++ +T +++R+ + + L G Sbjct: 820 QMMDDLKALMPKAVIVLGAVDGDLSDAMCRGIT--IINRWQLPCWKYREIWCQKLVVVIG 877 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLK 897 G RP MA +G + +K D+A+ V ++K Sbjct: 878 GVRPDMAMAGAKDASKLDEALLSVYDYVK 906 >gi|161506983|ref|YP_001576937.1| alanyl-tRNA synthetase [Lactobacillus helveticus DPC 4571] gi|205830127|sp|A8YTJ0|SYA_LACH4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|160347972|gb|ABX26646.1| Alanyl-tRNA synthetase [Lactobacillus helveticus DPC 4571] Length = 879 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 346/929 (37%), Positives = 519/929 (55%), Gaps = 92/929 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K L + Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY TVY +D ++ ++W+K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 123 EKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 +LQ+ N++ DLF +I A+E++T G KY N + ++I DH+R+ SF IADG LP Sbjct: 237 ILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGALP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + + LG + L+P + M S YPE++ + IE ++ Sbjct: 297 SNSGRGYVLRRLIRRADLHGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIENVIQ 356 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RF TLD GL LLD ++ K D+ ++G AFK++DT+G P ++ + GL Sbjct: 357 NEEKRFQATLDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDAGL 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F+ ++ Q+ RAR L S G + ++K+K S F Sbjct: 417 K-VDKKGFDAEMQAQKERARKARGDLQSMGRQDVTLMNIKDK--------------SVFE 461 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ+ Sbjct: 462 RD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQVA 508 Query: 530 DTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSI 585 D G DG + ++TDVQ +H + IL E VL ID + R L Sbjct: 509 DHGNIYDQDGELVAKVTDVQHAPNNQNLHFVDL---ILPMEKGKEYVLKIDKERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E+ VN I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL KY D+VRVV + G SS CGGTH S+T +I Sbjct: 626 AIDVKTTITTPEEGEKMGALALFDGKYGDKVRVVQM-----GDFSSEFCGGTHCSNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + I+SES++ AG+RRIEA+T ++A +L + L + + +K ++ N++ +++ + Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQADVKATKPDNIIDKIDSLE 740 Query: 765 EEYRKLQLIHAKRKLQLN-------------VEDLSC-HKIADVNFMSHIISEVDSKELK 810 + Q Q+N DL+ +ADVN M+ +L+ Sbjct: 741 SDLHDSQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMN---------DLR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 + D + +S +++L + KA+++I + + LD+ A DL + A + GGGGG Sbjct: 792 ELADNWKSGNKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKVAPIF-GGGGG 849 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GRP+MAQ+GG + AI V + K Sbjct: 850 GRPNMAQAGGKRPEGLNDAIKAVIEEISK 878 >gi|109946744|ref|YP_663972.1| alanyl-tRNA synthetase [Helicobacter acinonychis str. Sheeba] gi|122973456|sp|Q17ZF3|SYA_HELAH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|109713965|emb|CAJ98973.1| alaS [Helicobacter acinonychis str. Sheeba] Length = 847 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 328/892 (36%), Positives = 489/892 (54%), Gaps = 69/892 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL+FF+ GHE+ PS L+P ND TL+FTN+GMV FK+IFTG P T+ Q Sbjct: 3 IRNEFLQFFKNKGHEIYPSMPLVP-NDSTLLFTNAGMVQFKDIFTGMVPHPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EAFKLW+K + DKI ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAFKLWEKF--VPTDKIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGILSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFVPLMKEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RR++ + L+G E + ++ +C + + L ++K ++ + E++RF +T Sbjct: 297 RRILRRSLRHGYLMGLKEAFLYRVVGVVCEQFADTHAYLKESKEMVMKECFEEEKRFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL ++I +G +AFKLYDT G PLD+ D+L G A +D+ F Sbjct: 357 LESGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRNHG-ACVDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477 ++EQ R++A G + + ++ Y F+GY+ + F D K + Sbjct: 416 MQEQVKRSKASWKGKRNNAD---FSTILNAYAPNVFVGYETTECFSQALGFFDSDFKEMT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + P Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 473 ETNP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALLKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + K G+ + ++++ + V+ R +++ +HSATHLL AL Sbjct: 507 DEEAALVLDTKNFFGL--NFSLLKIKKALKKGDQVIAQVSNERLEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHVSQ GS + LRFD +HSK + EL+ +ED VN I ++L M Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLSSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS + S LCGG HV +TG I I+ ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRILKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ ++++LK+ LK +++ + ++ E + Q A Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNARILLK--NNDLIAGINKLKESVKNSQ--KASV 735 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 + L +E +N S ++ V+ ++K ++D L+ K + + M+ E+ + Sbjct: 736 PMDLPIE--------TINGTSVVVGVVEQGDIKEMIDRLKNKHEKLLAMVFKQENERISL 787 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 V + A ++A++ GG GGGR A +GG + K A+ Sbjct: 788 ACGVKNAPIKAHVWANEVAQIL-----GGKGGGRDDFASAGGKDIEKLQAAL 834 >gi|312867236|ref|ZP_07727446.1| alanine--tRNA ligase [Streptococcus parasanguinis F0405] gi|311097365|gb|EFQ55599.1| alanine--tRNA ligase [Streptococcus parasanguinis F0405] Length = 872 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 343/931 (36%), Positives = 508/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGIEGTFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL+ G ++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIIKSEEESFARTLNSGQHFAQTIVEDLKAKGQTVIAGQDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESSFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + + +TDVQK G +H V L L ID Sbjct: 498 PFYAEMGGQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++IE Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ +A+ K + NV++ + H+ +++ +S D Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHR-----YIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K ++ T+D+ +A ++ + A ++ Sbjct: 787 AGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNVIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG N K + + VA L Sbjct: 842 GRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|116074098|ref|ZP_01471360.1| alanyl-tRNA synthetase [Synechococcus sp. RS9916] gi|116069403|gb|EAU75155.1| alanyl-tRNA synthetase [Synechococcus sp. RS9916] Length = 892 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 345/908 (37%), Positives = 506/908 (55%), Gaps = 66/908 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF+ GH+ S+SL+P DPT++ T +GM+PFK IF GQ++ T+ Sbjct: 18 AEIRAAFLDFFEARGHKRTASASLVP-EDPTVLLTIAGMLPFKPIFLGQQERPAPCATSS 76 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T F LD + Sbjct: 77 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTGVFGLDPKN 132 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + Sbjct: 133 LVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL- 191 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ +R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ NNY Sbjct: 192 GDDGIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQQVPNNY 251 Query: 245 DIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL LI+ + + G+ Y+ + +VI DH R+ + LI DG+ +N GRGY+L Sbjct: 252 ETDLIYPLIETAAGLAGVDYKALDEKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYIL 311 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG +P + + A M AYP+L++ K +I L+ E+ RF +T Sbjct: 312 RRLLRRVVRHGRLLGIAKPFLTVMGEASIALMQEAYPQLLERKEVILAELKREEARFLET 371 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL VL+ K + G AF+LYDT+G PL++ Q+I GL +D+ F A Sbjct: 372 LERGEKLLADVLA--AKPAQIAGAQAFELYDTYGFPLELTQEIAEEHGLT-VDLAGFEAA 428 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +EEQR RA+A ++ + T + + + AT F GYDLL Sbjct: 429 MEEQRQRAKAAAVSIDL-TLQDAIDQVAAELEATSFRGYDLLEH---------------- 471 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR- 540 SS V+A+V GE ++A +G V+VV D TPFY E GGQ+GD G +GDG Sbjct: 472 -------SSSVQALVVNGEPAQQAGAGDAVQVVLDTTPFYGEGGGQVGDRGVLVGDGPDG 524 Query: 541 ---LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + + + +FVH VERG L + +D RR+ NH+ATHLL AL Sbjct: 525 NGLIVVIEGVSRNRSVFVHSGRVERGSLSIGDVVHGQVDKACRRRAQANHTATHLLQAAL 584 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++ + Q GS + + LRFD + + + EL+ IE +N I++ + + M E Sbjct: 585 KQVVDPGIGQAGSLVDFERLRFDFHCPRAVKADELEQIEALINGWISEAHSLEVQEMAIE 644 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IV+ES + Sbjct: 645 QAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVAESGVA 699 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR---KLQLIH 774 AGIRRIEA+ G ++L +D +K L K +V RV + +E + K Sbjct: 700 AGIRRIEAVAGGAVLAYLNERDLVVKQLGDRFKAQPAEIVERVLALQDELKSTGKALAAA 759 Query: 775 AKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG--I 830 L+ +A ++ + + VD L+ +L ++ G +++G Sbjct: 760 QAELAVAKSAALASKAVAVGELQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGGLP 819 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLA--RLSAKVLGG------GGGGGRPHMAQSGGPNG 882 + V++V F +A + + K +GG GGGGGRP++AQ+GG +G Sbjct: 820 DPADQGKVILVAA------FGKTVIAQGQQAGKFIGGIAKLCGGGGGGRPNLAQAGGRDG 873 Query: 883 NKADQAIA 890 D A+A Sbjct: 874 GALDGALA 881 >gi|251782836|ref|YP_002997139.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391466|dbj|BAH81925.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 872 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 345/918 (37%), Positives = 506/918 (55%), Gaps = 76/918 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y ED++++ W L D I +NFW + GP GP +EIF Sbjct: 117 WFDFPKEKLYMTYYPEDKDSYNRW---LALGVDPSHLIPLEENFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGM 228 FD+GE G E +RYIEIWN+V QF + + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLEEDLENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIIKEVEKLSGQTYDQDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVQTVGEIMASYYPEILEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDQLLAQLKEAGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G + Sbjct: 411 MAEEAGYK-IDHDGFKAAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIT 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S F+ E V + I + N ++ E+V E GQ + +VFDQTPFYAE Sbjct: 457 ESSTFLYETETVDARLAVIIVDN----------ERSEVVSE---GQAL-LVFDQTPFYAE 502 Query: 524 AGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 GGQ+ D G A GD I ++ DVQK G +H V L + L ID++ R Sbjct: 503 MGGQVADRGVIKNANGD-IVARVIDVQKAPNGQALHTVDV-LASLALDTVYTLDIDHKRR 560 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + NH+ATHLLH AL I+G H +Q GS + LRFD TH + +T EL+ IE+ VN Sbjct: 561 YAVEKNHTATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVTVDELRRIEEEVN 620 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I + L + T + E A + GA AL G KY VRVV + G +S LCGGTH++ Sbjct: 621 QQIWKALAITTTETDVETAKSMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLN 675 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGR 759 +T EI L I+ E I +G RRI A+TGQ+A Q++ LK +A LK Q V + Sbjct: 676 NTSEIGLFKILKEEGIGSGTRRILAVTGQQAFESFRKQEDALKEIAHTLKAPQMDQVPAK 735 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMD 814 V + E+ R LQ +A+ K + ++ +VN + +I S+V D+ L++ D Sbjct: 736 VVSLSEQLRDLQKENAELKEKAAAAQAGDVFKEVKEVNGLRYIASQVSVSDAGALRTFAD 795 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 ++K S +++LV E K +VL+ +A ++ ++ A ++ G GGG+P M Sbjct: 796 NWKQKDYSEVLVLVAAIGE-KVNVLVASKS---KEVHAGNMIKVLAPIV-SGRGGGKPDM 850 Query: 875 AQSGGPNGNKADQAIAGV 892 A +GG + +K +A V Sbjct: 851 AMAGGSDASKISDLMAAV 868 >gi|224105089|ref|XP_002313683.1| predicted protein [Populus trichocarpa] gi|313471500|sp|B9HQZ6|SYAP_POPTR RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|222850091|gb|EEE87638.1| predicted protein [Populus trichocarpa] Length = 994 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 338/918 (36%), Positives = 520/918 (56%), Gaps = 95/918 (10%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +IR FLEF+ H++LPS+SL+P +DPT++ T +GM+ FK IF G+ TT Q Sbjct: 102 AIRRRFLEFYASRSHKVLPSASLVP-DDPTVLLTIAGMLQFKPIFLGKAPRQVPRATTAQ 160 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AI+ AW+L TKEF L RL Sbjct: 161 KCIRT----NDVENVGRTTRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTKEFGLPADRL 216 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 +++VY++D+EAF++W G+ ++I R+ DNFW+ TGPCGPCSE+++D P Sbjct: 217 WVSVYEDDDEAFEIWHDEVGVPVERIKRMGEEDNFWTSGATGPCGPCSELYYD---FHPE 273 Query: 186 GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 +++ G+ R+IE +NLVFMQ+ + + L + +IDTG+GLER+A +LQ+ NN Sbjct: 274 RGYKNTDLGDDSRFIEFYNLVFMQYNKMDDGSLEPLKQKNIDTGLGLERLARILQKVPNN 333 Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL +I+ + ++ + Y + +N ++I DHLR+ +LI+DG+LP+N GRGYV Sbjct: 334 YETDLIYPIIEKAAELANISYALADDRTKMNLKIIGDHLRAIVYLISDGVLPSNIGRGYV 393 Query: 301 LRRIMRRAMCYARLLGYT---EPLMMHLLPALCTEMGSAYPEL---IQAK-LLIEETLRS 353 +RR++RRA+ RLLG E + LPA+ ++ P + ++A+ I + L+ Sbjct: 394 VRRLIRRAVRTGRLLGVKGGGEDGV--FLPAIAEKVIELSPHIDPDVKARGHSILDELQR 451 Query: 354 EDERFGKTLDRGLVLLDGVLS----HLGKDEI---LNGDVAFKLYDTHGLPLDIMQDILC 406 E+ RF +TL+RG LLD +L+ + K E L+G F LYDT G P++I ++ Sbjct: 452 EELRFVQTLERGEKLLDQMLAEALLNAQKSETLPCLSGKDVFLLYDTFGFPVEITTEVAE 511 Query: 407 ARGLAGIDIISFNQALEEQRSRARAH----SLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 +G+ ID+ F +E QR +++A L + +G L E T+F+GYD Sbjct: 512 EQGVK-IDMDGFEVEMENQRRQSQAAHNVVKLAVENGG------DLAENVHDTEFLGYDT 564 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L ++V++++ G+ V + G +VEV+ ++TPFYA Sbjct: 565 L-----------------------SARAVVESLLLNGKSVIQVSEGSEVEVLLNKTPFYA 601 Query: 523 EAGGQLGDTG--CAIGDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 E+GGQ+GD G D + ++I DVQK +FVH + G+L + +D Sbjct: 602 ESGGQIGDHGFLYVTQDQSKQTAVVEIKDVQKSLGSVFVHKGTIREGVLEVGREVEAAVD 661 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R++ ++H+ATHLL AL ++G SQ GS + D LRFD +P+ +EL+ IE Sbjct: 662 AKLRQRAKVHHTATHLLQSALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLHDSELEEIE 721 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 + +N I + T++M+ DA +GA A+ G KY ++VRVV V GV S LCGG Sbjct: 722 NLINGWIGDGTLLQTKVMSLTDAKEAGAIAMFGEKYGEQVRVVEVP----GV-SMELCGG 776 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THVS+T EI I+SE I +GIRRIEA+ G+ ++ +D ++K L S LKV V Sbjct: 777 THVSNTSEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSQMKLLCSTLKVKAEEV 836 Query: 757 VGRVEEIWEEYR----KLQLIHAK----RKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808 RV+ + EE R ++ + AK + + + S + + + + D+ Sbjct: 837 TTRVDNLLEELRTVRNEVSALRAKAAVYKASMIASKAFSVGTSKTIRVLVESMDDFDADA 896 Query: 809 LKSVMDALQKKIQSGIIMLVG-ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--- 864 LKS + L +Q +++G E K S++ T + VD+ + K +G Sbjct: 897 LKSAAEYLMDTLQDPAAIILGSCPDEGKVSLVAAFTPGV------VDIGIQAGKFIGPIA 950 Query: 865 ---GGGGGGRPHMAQSGG 879 GGGGGGRP+ AQ+GG Sbjct: 951 KLCGGGGGGRPNFAQAGG 968 >gi|331701288|ref|YP_004398247.1| alanyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929] gi|329128631|gb|AEB73184.1| alanyl-tRNA synthetase [Lactobacillus buchneri NRRL B-30929] Length = 880 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 338/920 (36%), Positives = 514/920 (55%), Gaps = 67/920 (7%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+FFQ+ GH + PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKQLSSGQIRQMYLDFFQEKGHTIEPSASLIPVDDPTLLWINSGVATMKKYFDGSVVPKN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T+ QK +R ND++NVG+T RHHT FEMLGNFS G YFK+ AI A++LLT K Sbjct: 61 PRMTSSQKSIRT----NDIENVGKTPRHHTLFEMLGNFSVGDYFKKEAITWAYELLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D +LY+TVY +D++A W+K+ G++ D II I DNFW + + GP GP SEIF Sbjct: 117 WFGWDPDKLYMTVYPKDKDAKMYWEKV-GVAPDHIIEI--EDNFWDIGQ-GPSGPDSEIF 172 Query: 177 FDQGECIPGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D+G+ P E E +R++E+WN+VF QF + LP+ +IDTGMGLE Sbjct: 173 YDRGKDFDNLAPDDPENYPGGENDRWLEVWNIVFSQFNHTPQDTYEPLPRKNIDTGMGLE 232 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNIVNH--RVIVDHLRSSSFLIAD 288 R+ ++ Q N++ DLF +I+ +E+++ KY+ N N R+I DH R+ + I D Sbjct: 233 RVVSIFQHARTNFETDLFLPMIRKTEELSDNKKYDTNKKDNEAFRIIADHARAITVAIGD 292 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G LP+N GRGYV+RR++RRA+ + LG E + L+P + + S YP++++ K I Sbjct: 293 GALPSNVGRGYVIRRLIRRAIVNGQRLGINEAFLYKLVPVVGQTLESYYPDVLKQKDYIA 352 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +RSE++RF +TL GL L + V+ + ++G AFKLYDT+G P+++ ++ Sbjct: 353 KVVRSEEDRFNETLTDGLKLFNQVVKDAKANHQTTIDGPTAFKLYDTYGFPVELTEEEAN 412 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL+ +D F +++Q+ RAR G S G + +K+ ++++GYD L Sbjct: 413 DAGLS-VDKPGFEVEMQKQKDRARKARSGAKSMGVQRDLLIEIKD---PSEYVGYDTL-- 466 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 D L + IV+ ++V+ + G VEV+FD+TPFYAE G Sbjct: 467 ----DVDHAELLE----------------IVENEKLVDHSKGGS-VEVIFDKTPFYAEMG 505 Query: 526 GQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GQ+ D G + GD + + DVQ G + H + + L + L +D + Sbjct: 506 GQVADRGVVLDEEGDKV-ADVVDVQHAPNGQNL-HTLKTQEPLEKGKTYHLIVDKLFHSR 563 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NH+ATHLL +L +LG H Q GS + P+ LRFD H +T +L+ +ED VN Sbjct: 564 VEKNHTATHLLDQSLRNVLGGHTQQAGSLVEPNYLRFDFNHFGQVTDEDLQKVEDMVNRQ 623 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I + V T + + + GA AL KY D+VRVVS+ G S CGGTHV++T Sbjct: 624 IFNEIDVNTVVTDPKTGKKMGAIALFSEKYGDKVRVVSI-----GDFSVEFCGGTHVNNT 678 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761 +I L IVSES + AG+RRIEA+T + A L +++LK +A LKV+Q + RV+ Sbjct: 679 RDIGLFKIVSESGVGAGVRRIEAVTAKDAFKLLNDHEKELKQIAGDLKVTQIKDTPKRVD 738 Query: 762 EIWEEYRKL----QLIHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDAL 816 ++ E + L Q + AK Q + K A + ++ II + +L+ + D Sbjct: 739 QLLGEIKDLTQKQQSLEAKLAGQQAQNVFADKKTAGKYSIITGIIKDAGMDQLRQLADTW 798 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + K S +++L S +K ++ V E + A DL + A + GGGGGRP+MAQ Sbjct: 799 RSKHLSDVLVLGTGSGDKANLIVAVADEQIKAGIKAGDLIKSIAGNI-KGGGGGRPNMAQ 857 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG + D+A++ +L Sbjct: 858 AGGKDPAGLDKAMSAAVDWL 877 >gi|325285608|ref|YP_004261398.1| alanyl-tRNA synthetase [Cellulophaga lytica DSM 7489] gi|324321062|gb|ADY28527.1| alanyl-tRNA synthetase [Cellulophaga lytica DSM 7489] Length = 871 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 346/922 (37%), Positives = 509/922 (55%), Gaps = 87/922 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+ FLEFF+ H+++ S+ ++ +DPTLMFTN+GM FK F G + V QK Sbjct: 6 IRSQFLEFFKNKTHKIVSSAPMVIKDDPTLMFTNAGMNQFKEFFLGNTEAKNTRVVDTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG+ HHT FEMLGN+SFG YFKE AI AW+LLTK F +D+ LY Sbjct: 66 CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEDAISWAWELLTKVFKIDESSLY 125 Query: 127 ITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 +TV+ + D+EA LWKKI + +I+ DNFW M + GPCGPCSEI Sbjct: 126 VTVFEGSKDKDNLEMDQEALDLWKKI--IPESQILFGNKKDNFWEMGDQGPCGPCSEIHV 183 Query: 178 D----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 D + + G + + + +EIWNLVFMQ+ ++ E LP +DTGMG ER+ Sbjct: 184 DIRSAEEKAKVSGAELVNMDHPQVVEIWNLVFMQYNRKANGELENLPAKHVDTGMGFERL 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGIL 291 V+Q +NYD D+F +I+ E +T +Y N N RVI DH+R+ +F IADG L Sbjct: 244 CMVMQGVQSNYDTDVFTPIIREIETITNAEYNKNEDTNIAIRVIADHIRAVAFSIADGQL 303 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RRA+ Y L EP M L+ L MG A+PEL + K LIE Sbjct: 304 PSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMYRLVNVLTNTMGDAFPELKEQKQLIENV 363 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ F KTLD+GLVLLD V++ + ++G AF+LYDT+G P+D+ IL RG Sbjct: 364 VKEEEHSFLKTLDQGLVLLDSVINS-ASSKTIDGRKAFELYDTYGFPIDLTALILSERGY 422 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F+ A++EQ++R+R+ S +++ W L + +F+GYD+L + + Sbjct: 423 T-LDEKGFDAAMQEQKNRSRS-----ASEVSKEDWEVLLQD-AEQEFVGYDVLETNVRLV 475 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + RKV +K G++ ++VF+ TPFYAE GGQ+GD Sbjct: 476 KYRKVTSKK---------------------------EGKQYQLVFNITPFYAEGGGQVGD 508 Query: 531 TG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSINHS 588 G +G + I D +K+ I +H A + + + + +D + R++ + NH+ Sbjct: 509 KGYLEAQNGDVVYILDTKKENNEI-IHFA---KNLPKNTTDIFKAVVDVKQRQRTASNHT 564 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV Q GS + LRFD +H +T+ +LK +ED VN I NLP Sbjct: 565 ATHLLHQALREVLGTHVEQKGSAVHSKYLRFDFSHFSKVTTEQLKEVEDFVNARIEGNLP 624 Query: 649 V-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + R + ++A+ +GA AL G KY D VR++ S LCGGTHV +TG+I Sbjct: 625 LEEKRNIPMQEALDAGAMALFGEKYGDTVRLIRFG------QSVELCGGTHVQNTGDIWH 678 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I SE ++ +GIRRIEAIT + +E L + L ++ + V V + EE Sbjct: 679 FKIKSEGAVASGIRRIEAITSDAVKDFYADNNEVLTDIKEVLNNAK-DPVKAVVSLQEEN 737 Query: 768 RKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD-----SKELKSVMDALQ 817 KL QL+ K K N++ +++ DVN + + +VD K+L M A Sbjct: 738 NKLKKEIEQLLKDKAK---NLKGDLLNELQDVNGVQFLAKKVDLDPAGIKDLCFNMGA-- 792 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMA 875 + + +L G KA++ ++++L NA + R K + GGGGG+P A Sbjct: 793 --NATNMFLLFGAENNGKATLSCYISKELAAEKDLNAGAIVRELGKYI-QGGGGGQPFFA 849 Query: 876 QSGGPNGNKADQAIAGVASFLK 897 +GG N +A+ +++K Sbjct: 850 TAGGKNPGGIAEALDKAIAYIK 871 >gi|295099596|emb|CBK88685.1| alanyl-tRNA synthetase [Eubacterium cylindroides T2-87] Length = 875 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 330/911 (36%), Positives = 501/911 (54%), Gaps = 64/911 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL++F+ GH + P +SL+P NDPTL++ N+G+ K F G EKP + Sbjct: 7 NQVRQMFLDYFKSKGHMIEPGASLVPNNDPTLLWINAGVAALKKYFDGSEKPRCNRIANA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT E +D+ Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSEEWMGIDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY++VY +D++A+K+W ++ + I++ T DNFW + + GP GP SEIFFD+GE Sbjct: 123 DKLYVSVYTDDDQAYKIWTEVCKVDPSHILK--TYDNFWEIGK-GPGGPDSEIFFDRGEK 179 Query: 183 I-PGGLPGS----SEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234 P GL E +RY+E+WN+VF Q++ + ++++ LP+ +IDTGMGLER+ Sbjct: 180 YDPEGLGEKLFFEEMENDRYVEVWNVVFSQYDCDPELDRKDYKELPQKNIDTGMGLERLV 239 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPAN 294 ++Q+ N+D DLF +I A+E++ YEG + +RVI DH+R+ +F ++DG +N Sbjct: 240 ALIQDGETNFDTDLFLPIIHATEKLAKYPYEGEYKMAYRVIADHIRTLTFALSDGANFSN 299 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 GRGYVLRR++RRA+ + LG + + L+P + M YP L + ++ ++ E Sbjct: 300 SGRGYVLRRVLRRAVRFGLKLGLEDAFLYKLVPVVADTMQDFYPYLQEHVEFNQKLIKVE 359 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 ++ F KTL G LLD +S KD L+G+V FKLYDT+G P ++ Q+I GL + Sbjct: 360 EDTFKKTLKNGQALLDEEISK-AKDGKLSGEVVFKLYDTYGFPFELTQEIASESGLE-VS 417 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F+ + +Q+ RAR S T+ L + FIGYD M+ D K Sbjct: 418 REEFDVEMNKQKERARNARNTKDSFATQNA--ELMNFTQESTFIGYD------HMECDGK 469 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 ++ A+ + G +V+ + +V+ D T FYAE+GGQ+ D G Sbjct: 470 II-----------------ALFKDGHMVD--TLSDEGQVILDTTCFYAESGGQVADAGTL 510 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 DG+ ++TDVQK +H +E GIL MSL +D R+ + NHS THLL Sbjct: 511 SADGVMCKVTDVQKARNKQHIHSVEIESGILEVGMSLHCHVDEAKRKATTANHSCTHLLQ 570 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++G H+ Q GS + + LRFD H + +T+ +L IED VN IA PV IM Sbjct: 571 SALKEVVGEHIHQAGSYVCDEYLRFDFNHFEKLTTKQLDEIEDLVNQYIAGAYPVTKEIM 630 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + E+A SGA AL KY DRVRVV++ G S C G HV +T +I L I+SE Sbjct: 631 DIEEAKKSGATALFNEKYGDRVRVVTM-----GDVSKEFCAGCHVENTSQIGLCKIISEE 685 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLA-SFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 SI + RRI A TG +A + L+++A S + N+ +V+ ++ LQ Sbjct: 686 SIGSDARRIVAKTGYQAYKECASEKNMLENIAISAKQKGIKNIDTKVDAAYQNMHALQKE 745 Query: 772 ------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 I A + + E +S + VN + + +D+ LK ++ L+ K + + Sbjct: 746 IEQLKNQIFALKSNEWVNETVS---LGSVNALIKKVEGMDAGALKDIVSNLKAKDPNIVC 802 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 +S +K V + + +A L + +A+ L G GGG+P MAQ+GG + +K Sbjct: 803 FFGNVSNDKIVFVSGAGKDAVSKGVHAGQLVKKAAQ-LCSGNGGGKPDMAQAGGKDISKL 861 Query: 886 DQAIAGVASFL 896 ++A + S L Sbjct: 862 NEAFEAIKSEL 872 >gi|256818974|ref|YP_003140253.1| alanyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271] gi|256580557|gb|ACU91692.1| alanyl-tRNA synthetase [Capnocytophaga ochracea DSM 7271] Length = 877 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 340/922 (36%), Positives = 504/922 (54%), Gaps = 82/922 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ GH ++PS+ ++ NDPTLMFTN+GM FK F G KP Y+ V QK Sbjct: 6 IREQFLKFFESKGHTIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNAKPKYKRVADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VGR HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + + LY Sbjct: 66 CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAISWAWELLTEIYKIPKENLY 125 Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +TV++ D+EA+ +WK+ ++ + I+ DNFW M + GPCGPC+EI D Sbjct: 126 VTVFEGSEEDGVPFDQEAYDIWKE--RIAENHILLGNKKDNFWEMGDQGPCGPCTEIHVD 183 Query: 179 -QGECIPGGLPGSSEEGERY---IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + + +PG Y IEIWN VFM+F ++ LP ++DTGMG ER+ Sbjct: 184 IRSDEEKAKVPGRDLVNNDYPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---------RVIVDHLRSSSFL 285 VLQ+K +NYD D+F LI E++T +Y + V RVI DH+R+ +F Sbjct: 244 MVLQKKQSNYDTDVFTPLIHKVEEITQSRYTSGDRVTAEQEQVNIAIRVISDHIRAVAFA 303 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG +PEL + + Sbjct: 304 ITDGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLSNQMGGTFPELEKQQ 363 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 LI ++ E+ F +TL++GL++LD V+ + L+G AF+LYDT+G P D+ I Sbjct: 364 FLIMSVIKEEEASFLRTLEQGLLMLD-VMIQNSPGKQLSGGKAFELYDTYGFPKDLTALI 422 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L +GL +D SF + L++Q+ R+RA + W L++ +FIGYD L Sbjct: 423 LSEKGLT-MDEASFEEQLQKQKERSRA-----AAQIKADDWVILRDD-DEEEFIGYDTLE 475 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + R+V QK G ++VF+ TPFY E Sbjct: 476 AVVRLVKYRRVESQK---------------------------DGTHFQLVFNTTPFYPEG 508 Query: 525 GGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G +G + I D KK + +H I E + +R Sbjct: 509 GGQVGDKGTLQSANGELIYILDT-KKENNLIIH--ISEHLPTNLNDPFKAEVHSISREMA 565 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS + P+ LRFD +H +T ELK +E VN I Sbjct: 566 EANHSATHLLHQALREVLGTHVEQKGSRVAPETLRFDFSHFAKLTEEELKKVEQLVNRRI 625 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + +P+ R + + A+ SGA AL G KY DRVR+ +++ D S LCGGTHV +T Sbjct: 626 FEKIPLQEHRNIPMQQAVESGAMALFGEKYGDRVRM--IQFGD----SKELCGGTHVKNT 679 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I I+SE ++ AGIRRIEAIT A + Q++ ++ + LK +Q + V + Sbjct: 680 GDIWYFKIISEGAVAAGIRRIEAITRGGAMKYFTEQEQLVEQIKETLKNAQ-DPVKAIRH 738 Query: 763 IWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDAL 816 + EE +++L+ + ++ QL + + +VN + ++ +VD++ LK + L Sbjct: 739 LQEENAALHKELEQLRKEQAKQLKTSIKA--EFTEVNGVQCLVKQVDAEVATLKDLAFEL 796 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874 ++++ I +E KA +L + +DL +A + R K + GGGGG+P Sbjct: 797 GNEVKNAFIFFASAHEEGKALLLCYINKDLAQAKGLDAGKIVRELGKYI-HGGGGGQPFF 855 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 A +GG N +A++ V +L Sbjct: 856 ATAGGKNPGGITEALSKVKDYL 877 >gi|296270020|ref|YP_003652652.1| alanyl-tRNA synthetase [Thermobispora bispora DSM 43833] gi|296092807|gb|ADG88759.1| alanyl-tRNA synthetase [Thermobispora bispora DSM 43833] Length = 889 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 304/784 (38%), Positives = 446/784 (56%), Gaps = 53/784 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I FL FF++NGH ++PS+SL+ DPTL+ N+GMVPFK F GQ+KP ++ T++ Sbjct: 4 AEIARRFLRFFEENGHTVVPSASLV-AEDPTLLLVNAGMVPFKPYFLGQQKPPFRRATSL 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D+D VG+T RH +FF+MLGNFSFG YFKE AI AW+LLT+ F Sbjct: 63 QKCVRT----LDIDEVGKTPRHASFFQMLGNFSFGDYFKEGAIPFAWELLTRPVSEGGFG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 + RL++TVY +D+EA ++W+K+ G+ A++I R DN+W M GP GPCSEI++D+ Sbjct: 119 FPEDRLWVTVYLDDDEAQEIWRKV-GVPAERIQRRGLADNYWHMGVPGPGGPCSEIYYDR 177 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERM 233 G G G + RY+E+WNLVFMQ + + + LP +IDTGMGLERM Sbjct: 178 GPQY-GREGGPIADENRYLEVWNLVFMQEQLSAVRSKTDFDVAGPLPAKNIDTGMGLERM 236 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ID +I+ + ++T +Y + + + RV+ DH+R+ L+ DG+L Sbjct: 237 AAILQGVDNIYEIDTTSKIIKRAAELTETRYGRDERSDICLRVVADHMRAGVMLVGDGVL 296 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEET 350 P+NEGRGYVLRR++RR + RLLG E M L A E M YPEL + I Sbjct: 297 PSNEGRGYVLRRMLRRTIRNLRLLGAGEERYMRELTATTIEAMSGLYPELKTEEARIHTV 356 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + +E+ F TL G + D ++ + +L+G+ AF+L+DT+G P+D+ ++ + Sbjct: 357 IEAEEASFLGTLRTGTAIFDAAVAETKRKGGTVLSGEQAFQLHDTYGFPIDLTLEMAAEQ 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRGSK 467 GL +D F + ++EQR RA+A + +G + FS + EK G F+GYD Sbjct: 417 GLK-VDEEGFRRLMQEQRERAKADAKAKKTGHADISVFSGILEKAGKIDFVGYDR----- 470 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 T +++V IV G V A G +E+V D+TPFYAE GGQ Sbjct: 471 -----------------TTAEATVVGLIVN-GVSVPAAGEGTSLEIVLDRTPFYAEGGGQ 512 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 L D G G +++ DVQ +G+ VH V G + ID + RR +S +H Sbjct: 513 LADQGVIRTSGAEIEVLDVQSPIDGLIVHRGKVRSGEVLVGDQAHAEIDVERRRAISRSH 572 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATH++H LG +Q GS +P RFD T + + + L+ +ED VN ++ +L Sbjct: 573 TATHMVHRGFRNALGESAAQAGSENSPGRFRFDFTSAGAVPPSVLRDVEDEVNAVLINDL 632 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV ++ +A A GA AL G KY D VRVV V G +S LCGGTHV+++G++ L Sbjct: 633 PVRAFYTSQAEARAMGALALFGEKYGDEVRVVEV-----GDYSRELCGGTHVATSGQLGL 687 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + I+ ESS+ AG+RR+EA+ G A L + + L+ LK + + R+E I Sbjct: 688 IKILGESSVGAGVRRVEALVGLDAFRFLAKESVLVSQLSEQLKARREELPERIEGIVSRL 747 Query: 768 RKLQ 771 R + Sbjct: 748 RAAE 751 >gi|315224360|ref|ZP_07866194.1| alanine--tRNA ligase [Capnocytophaga ochracea F0287] gi|314945750|gb|EFS97765.1| alanine--tRNA ligase [Capnocytophaga ochracea F0287] Length = 877 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 339/922 (36%), Positives = 506/922 (54%), Gaps = 82/922 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ GH ++PS+ ++ NDPTLMFTN+GM FK F G KP Y+ V QK Sbjct: 6 IREQFLKFFKSKGHTIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNAKPKYKRVADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VGR HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + + LY Sbjct: 66 CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAISWAWELLTEIYKIPKENLY 125 Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +TV++ D+EA+ +WK+ ++ + I+ DNFW M + GPCGPC+EI D Sbjct: 126 VTVFEGSEEDGVPFDQEAYDIWKE--RIAENHILLGNKKDNFWEMGDQGPCGPCTEIHVD 183 Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + + +PG + + + IEIWN VFM+F ++ LP ++DTGMG ER+ Sbjct: 184 IRSDEEKAKVPGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPSRNVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---------RVIVDHLRSSSFL 285 VLQ+K +NYD D+F LI E++T +Y + V RVI DH+R+ +F Sbjct: 244 MVLQKKQSNYDTDVFTPLIHKVEEITQSRYTSGDRVTPEQEQVNIAIRVISDHIRAVAFA 303 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG +PEL + + Sbjct: 304 ITDGQLPSNNGAGYVIRRILRRAIRYGFTFLNQKEPFIYKLVETLSNQMGGTFPELEKQQ 363 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 LI ++ E+ F +TL++GL++LD V+ + L+G AF+LYDT+G P D+ I Sbjct: 364 FLIMSVIKEEEASFLRTLEQGLLMLD-VMIQNSPGKQLSGGKAFELYDTYGFPKDLTALI 422 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L +GL +D SF + L++Q+ R+RA + W L++ +FIGYD L Sbjct: 423 LSEKGLT-MDEASFEEQLQKQKERSRA-----AAQIKADDWVILRDD-DEEEFIGYDTLE 475 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + R+V QK G ++VF+ TPFY E Sbjct: 476 AVVRLVKYRRVESQK---------------------------DGTHFQLVFNTTPFYPEG 508 Query: 525 GGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G +G + I D KK + +H I E + +R Sbjct: 509 GGQVGDKGTLQSANGELIYILDT-KKENNLIIH--ISEHLPTNLNDPFKAEVHSISREMA 565 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS + P+ LRFD +H +T ELK +E VN I Sbjct: 566 EANHSATHLLHQALREVLGTHVEQKGSRVAPETLRFDFSHFAKLTEEELKKVEQLVNRRI 625 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + +P+ R + + A+ SGA AL G KY DRVR+ +++ D S LCGGTHV +T Sbjct: 626 FEKIPLQEHRNIPMQQAVESGAMALFGEKYGDRVRM--IQFGD----SKELCGGTHVKNT 679 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I I+SE ++ AGIRRIEAIT A + Q++ ++ + LK +Q + V + Sbjct: 680 GDIWYFKIISEGAVAAGIRRIEAITRGGAMKYFTEQEQLVEQIKETLKNAQ-DPVKAIRH 738 Query: 763 IWEE----YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK--ELKSVMDAL 816 + EE +++L+ + ++ QL + + +VN + ++ +VD++ LK + L Sbjct: 739 LQEENAALHKELEQLRKEQAKQLKTSIKA--EFTEVNGVQCLVKQVDAEVATLKDLAFEL 796 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874 ++++ I +E KA +L + +DL +A + R K + GGGGG+P Sbjct: 797 GNEVKNAFIFFASAHEEGKALLLCYINKDLAQAKGLDAGKIVRELGKYI-HGGGGGQPFF 855 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 A +GG N +A++ V +L Sbjct: 856 ATAGGKNPGGITEALSKVKDYL 877 >gi|205830104|sp|A8LCW4|SYA_FRASN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 880 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 305/771 (39%), Positives = 437/771 (56%), Gaps = 45/771 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G K + T Sbjct: 2 DTAEIRRRFLNHFSERGHTVVPSASLV-AQDPTLLLVNAGMVPFKPYFLGDLKAPWNRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQKCVR D+DNVGRT RH +FF+M GNFSFG YFK AI A++L+ + + Sbjct: 61 SVQKCVRT----VDIDNVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELIVDGYGFNP 116 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L+ TVY +D+EA +W+ + L A++I R DNFWSM GPCGPCSEI+FD+G Sbjct: 117 DDLWATVYLDDDEAEAIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGPA 174 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMATVL 237 G G + +RY+EIWNLVFMQF + E LP +IDTGMGLERMAT+L Sbjct: 175 Y-GREGGPEADEDRYLEIWNLVFMQFARGEGSEYGYEIVGDLPARNIDTGMGLERMATIL 233 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N Y+ID+ + ++ A+ ++TG +Y + ++ V RV+ DH R+++ LI+DG+ P+NE Sbjct: 234 QGVENLYEIDISRPVLDAAGRLTGTRYGADPDSDVRLRVVADHTRTAAMLISDGVSPSNE 293 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ ARLLG EP+M L + MG YPEL+ I +E+ Sbjct: 294 GRGYVLRRMLRRAVRDARLLGAREPVMDELFGVVRAAMGPIYPELVDQAEAITAVAVAEE 353 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F +TL G L D ++ L+G+ AF+L+DT+G P+D+ D+ GL + Sbjct: 354 TAFLETLRTGTTLFDTAVTQARSSGSSQLSGESAFRLHDTYGFPIDLTMDMAADAGLT-V 412 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKED 472 D F + +E QR A+A G + F + G T F GY ++ +E Sbjct: 413 DEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGY-----TELGRE- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +G+ IV + G+ + A G++V ++ D TPFYAE+GGQ D G Sbjct: 467 -------------SGIVGIVG--IGDGDSLTAAGEGEEVGILLDATPFYAESGGQEADLG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 DG ++ DVQ+ + +H V G LR + +D + RR +S +H+ATHL Sbjct: 512 RIRFDGGEAEVLDVQRPVPDLVMHRVKVLGGELRVGADVFAEVDVERRRAVSRSHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H A LG +Q GS +P LRFD + + L +ED VN+I ++L V Sbjct: 572 VHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEIALRDLEVRWY 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + ++E+A GA AL G KY DRVRVV V G ++ LCGGTHV+S+ ++ + ++S Sbjct: 632 VTSQEEARRLGAMALFGEKYGDRVRVVDV-----GDYARELCGGTHVASSAQLGAIKLLS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 ESSI AG RR+EA+ G A L + + L+S LK + RV +I Sbjct: 687 ESSISAGTRRVEALVGMDAFRFLAREHVLVSQLSSTLKARPDELADRVADI 737 >gi|325282994|ref|YP_004255535.1| alanyl-tRNA synthetase [Deinococcus proteolyticus MRP] gi|324314803|gb|ADY25918.1| alanyl-tRNA synthetase [Deinococcus proteolyticus MRP] Length = 892 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 326/872 (37%), Positives = 480/872 (55%), Gaps = 73/872 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58 + IR FLEFF H +LP ++ DPT MFT +GM FK F G + Sbjct: 16 TTADIRRKFLEFFHSKEHLILPGHPVV-APDPTTMFTVAGMQQFKPQFMGAPAVFSEGAS 74 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 + VTT QKCVR +D++NVGRT RH + FEM+GNFSFG YFK AI AW+ LT Sbjct: 75 KRVTTAQKCVRM----DDIENVGRTRRHLSLFEMMGNFSFGDYFKRDAIAWAWEFLTSPE 130 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171 D R+Y+T+Y +D+EAF+ W + GL D I R ++NFW GPCGP Sbjct: 131 WMGFDPERMYVTIYVDDDEAFRYWTEDHGLPKDHIHRFGADENFWPADAPLKGPNGPCGP 190 Query: 172 CSEIFFDQGECI---PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER-----FILPKMS 223 CSEI++D+G + E R++E+WNLVF +F++Q E LP + Sbjct: 191 CSEIYYDRGPKYGDDSWADYAKTRESARFLEVWNLVFPEFDRQGLDESGQPILAPLPFKN 250 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283 IDTGMGLER+A+V+Q+ + Y D+F LI +++G YEG + V+HRVI +H RS S Sbjct: 251 IDTGMGLERVASVVQDVPDFYTNDVFAPLIDKIVELSGRPYEGESSVSHRVIAEHARSVS 310 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 +IADG+ +N GRGYV+R+++RRA +A LLG EP + L+P + +M YPEL+ Sbjct: 311 MVIADGVALSNTGRGYVVRKVLRRASRHAYLLGLNEPSIYRLVPLVVEKMKDGYPELVAE 370 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + ++ +R+E+ERF +TL+ G+ L+G+L LG +++L+G+ AF LYDT+G PLD+ Q+ Sbjct: 371 QERVQAAIRAEEERFLRTLEGGIQRLNGLLEELGSEKVLSGEDAFTLYDTYGFPLDLTQE 430 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 I G+ +D+ + ALE + ARA S G + T+F+GYD L Sbjct: 431 IAAEHGV-DVDVTGYELALERAQETARAGS-KFGKSELFDAGAEAVQNLPQTEFVGYDQL 488 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + +VL +++ V G K VV +TPFYAE Sbjct: 489 ------DAEGEVLA-----------------------VLDSEVEGHKT-VVLSRTPFYAE 518 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GG++GDTG G ++ D +K G+F+H V RG L ++ + V + R + Sbjct: 519 GGGEVGDTGRLEWAGGEGRVLDTRKIG-GVFLHEVEVLRGEL-SQGAGVRGVVGAERAAI 576 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 +H+ATHLLH AL +LGS V Q GS + PD LRFD TH+ +++ EL ++E V+ + Sbjct: 577 QRHHTATHLLHAALRAVLGSGVRQAGSLVAPDRLRFDFTHTAALSAEELAAVETLVSRWV 636 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE----YEDGGVHSSALCGGTHV 699 + N PV+ + M E+A A+GA AL G KY D VRVV VE Y V S LCGG HV Sbjct: 637 SANFPVIWQEMPIEEAKAAGATALFGEKYGDTVRVVRVEGDVDYGGAAVSSMELCGGAHV 696 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 TG+I ++S+ ++ AG+RRIEA+ G+ A + + + +L AS L S + R Sbjct: 697 RRTGDIGAFVLLSDENVAAGVRRIEALAGEAATAWVRERLGRLNRTASLLNTSAEGLEDR 756 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------NFMSHIISEVDSKELKSVM 813 + + + + + A+ + QL + AD S +S V+ EL+ Sbjct: 757 IAGLQHQLKASEKEMAQVRAQLAEAQMGGGNSADTRELGGFKVASLKLSGVEGNELRGAA 816 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTED 845 D L + QSG ++V I+ +K +++ T+D Sbjct: 817 DRLLE--QSGADLVV-IASDK--GLVVKATKD 843 >gi|307127048|ref|YP_003879079.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 670-6B] gi|306484110|gb|ADM90979.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 670-6B] Length = 872 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 344/925 (37%), Positives = 503/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y +Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ AVS ++F +T Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498 Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + I +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|187933980|ref|YP_001885372.1| alanyl-tRNA synthetase [Clostridium botulinum B str. Eklund 17B] gi|205830030|sp|B2THN0|SYA_CLOBB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|187722133|gb|ACD23354.1| alanine--tRNA ligase [Clostridium botulinum B str. Eklund 17B] Length = 879 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 319/903 (35%), Positives = 506/903 (56%), Gaps = 46/903 (5%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + + +R +L FF+ H L S SL+P ND +L+ N+GM P K FTG ++P + Sbjct: 3 FTKTNDLRDAYLNFFESKDHLKLESFSLVPQNDKSLLLINAGMAPLKPYFTGLQEPPKKR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TT QKCVR G D+DNVG T+RH TFFEMLGNFSFG YFK+ I AW+ LT +L Sbjct: 63 ITTCQKCVRTG----DIDNVGITSRHGTFFEMLGNFSFGDYFKKEIIPWAWEFLTGVLEL 118 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY+T+Y +D+EA++ W ++ + I R+ DNFW GPCGPC+EI F + Sbjct: 119 PKEKLYVTIYLDDDEAYEYWTTLTDVDKSHIFRLGKEDNFWEHG-AGPCGPCTEIHFSRT 177 Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + +P E + ++ IE+WNLVF QF+ K L +IDTGMGLER+A V+Q Sbjct: 178 DEVPKNSEEFVELSDADKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVVMQ 237 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296 K + ++ID +++++ + +KY E N I V+ R+I DH+RS +F+I+D I+P+NEG Sbjct: 238 NKNSIFEIDTLENILKEVGNLASVKYGEDNKIDVSLRIITDHIRSITFMISDDIMPSNEG 297 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + + LG + + +L + + SAYP+L K I++ ++ E++ Sbjct: 298 RGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDCSSAYPDLEVKKEYIKKVIKIEED 357 Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F +TLD G+ +L+ ++S L +++L G FKLYDT G P+++ ++IL GL+ +D Sbjct: 358 KFRETLDSGMEILNNLISELKENNEKVLKGADGFKLYDTFGFPMELTKEILEDEGLS-LD 416 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F++ ++EQR RAR+ T+ + T F GY+ Sbjct: 417 EDGFHEEMKEQRERARSARKTSNYMGTDVKTLDIISSEIETTFDGYE------------- 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + + VK +V + + G VV D TPFYAE GGQ+GDTG Sbjct: 464 ----------NDSLIAEVKTLVNGEDFADSITEGDNAVVVTDVTPFYAEMGGQIGDTGTI 513 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D + +I D +K G +H G L+ + L +D R + NH+ATHLL Sbjct: 514 YNDNFKGKILDTKKNIGGKIIHFVEAISGELKVGDKVTLEVDNARRENIKKNHTATHLLD 573 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LGSHV Q GS ++ D LRFD +H + + EL +E VN+ I PV T M Sbjct: 574 SALVKVLGSHVHQAGSYVSADRLRFDFSHFEGVKEEELLKVEQLVNEAIMSVTPVNTTEM 633 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 + ++A SGA + KY ++VRVV G +S LCGGTH+ +TG+I L I+SE+ Sbjct: 634 DLQEAKNSGAVGIFDDKYAEKVRVVC-----AGEYSKELCGGTHIDNTGKIGLFKIISEN 688 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE----IWEEYRKL 770 I AG RRIEA+TG A + + E LK ++ LK S+ + ++++ + E+ +++ Sbjct: 689 GIAAGTRRIEAVTGMEAYKLVNEKAELLKQISGKLKCSEKEITSKLDQQSKEMKEKEKEI 748 Query: 771 QLIHAK-RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 ++ +K +++N S + +N +++ + +VD + L+ + + ++ + + + +L Sbjct: 749 TILKSKFASMEINDIINSAKDVKGINIVAYALKDVDGEALRGLCEKVRDNVNNSLTLLTS 808 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S + K + + ++ + + + GGGGGGRP MAQ+GG K +A+ Sbjct: 809 -SVDGKVVICAMADKEAVSKGAHCGKVIKEVATILGGGGGGRPDMAQAGGKLPEKISEAL 867 Query: 890 AGV 892 V Sbjct: 868 DSV 870 >gi|158313530|ref|YP_001506038.1| alanyl-tRNA synthetase [Frankia sp. EAN1pec] gi|158108935|gb|ABW11132.1| alanyl-tRNA synthetase [Frankia sp. EAN1pec] Length = 892 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 305/771 (39%), Positives = 437/771 (56%), Gaps = 45/771 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G K + T Sbjct: 14 DTAEIRRRFLNHFSERGHTVVPSASLV-AQDPTLLLVNAGMVPFKPYFLGDLKAPWNRAT 72 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQKCVR D+DNVGRT RH +FF+M GNFSFG YFK AI A++L+ + + Sbjct: 73 SVQKCVRT----VDIDNVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELIVDGYGFNP 128 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L+ TVY +D+EA +W+ + L A++I R DNFWSM GPCGPCSEI+FD+G Sbjct: 129 DDLWATVYLDDDEAEAIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGPA 186 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMATVL 237 G G + +RY+EIWNLVFMQF + E LP +IDTGMGLERMAT+L Sbjct: 187 Y-GREGGPEADEDRYLEIWNLVFMQFARGEGSEYGYEIVGDLPARNIDTGMGLERMATIL 245 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N Y+ID+ + ++ A+ ++TG +Y + ++ V RV+ DH R+++ LI+DG+ P+NE Sbjct: 246 QGVENLYEIDISRPVLDAAGRLTGTRYGADPDSDVRLRVVADHTRTAAMLISDGVSPSNE 305 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ ARLLG EP+M L + MG YPEL+ I +E+ Sbjct: 306 GRGYVLRRMLRRAVRDARLLGAREPVMDELFGVVRAAMGPIYPELVDQAEAITAVAVAEE 365 Query: 356 ERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F +TL G L D ++ L+G+ AF+L+DT+G P+D+ D+ GL + Sbjct: 366 TAFLETLRTGTTLFDTAVTQARSSGSSQLSGESAFRLHDTYGFPIDLTMDMAADAGLT-V 424 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKED 472 D F + +E QR A+A G + F + G T F GY ++ +E Sbjct: 425 DEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGY-----TELGRE- 478 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +G+ IV + G+ + A G++V ++ D TPFYAE+GGQ D G Sbjct: 479 -------------SGIVGIVG--IGDGDSLTAAGEGEEVGILLDATPFYAESGGQEADLG 523 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 DG ++ DVQ+ + +H V G LR + +D + RR +S +H+ATHL Sbjct: 524 RIRFDGGEAEVLDVQRPVPDLVMHRVKVLGGELRVGADVFAEVDVERRRAVSRSHTATHL 583 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H A LG +Q GS +P LRFD + + L +ED VN+I ++L V Sbjct: 584 VHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEIALRDLEVRWY 643 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + ++E+A GA AL G KY DRVRVV V G ++ LCGGTHV+S+ ++ + ++S Sbjct: 644 VTSQEEARRLGAMALFGEKYGDRVRVVDV-----GDYARELCGGTHVASSAQLGAIKLLS 698 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 ESSI AG RR+EA+ G A L + + L+S LK + RV +I Sbjct: 699 ESSISAGTRRVEALVGMDAFRFLAREHVLVSQLSSTLKARPDELADRVADI 749 >gi|319947341|ref|ZP_08021574.1| alanine--tRNA ligase [Streptococcus australis ATCC 700641] gi|319746583|gb|EFV98843.1| alanine--tRNA ligase [Streptococcus australis ATCC 700641] Length = 872 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 345/927 (37%), Positives = 506/927 (54%), Gaps = 86/927 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y D +++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPADTDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKEKGQTVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +TP Sbjct: 469 ----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAETP 498 Query: 520 FYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G A G+ + +TDVQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDATGN-VVATVTDVQKAPNGQALHTVEV-HAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG H +Q GS + LRFD TH + +T EL++IE Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEAIAVETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVE---DLSCHKIADVNFMSHIISEV---DSKEL 809 V +VE + E+ R+LQ +A+ K + D+ H + + N +I S+V D+ L Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAVAGDVFKH-VQEANGHRYIASQVSVSDAGAL 790 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 ++ D ++K S +++LV +K ++ T+D+ +A +L + A ++ G GG Sbjct: 791 RTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKDV----HAGNLVKELAPIV-DGRGG 845 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 G+P MA +GG N K + + VA L Sbjct: 846 GKPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|256852223|ref|ZP_05557609.1| alanyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN] gi|260661745|ref|ZP_05862656.1| alanyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN] gi|297205611|ref|ZP_06923007.1| alanine--tRNA ligase [Lactobacillus jensenii JV-V16] gi|256615269|gb|EEU20460.1| alanyl-tRNA synthetase [Lactobacillus jensenii 27-2-CHN] gi|260547492|gb|EEX23471.1| alanyl-tRNA synthetase [Lactobacillus jensenii 115-3-CHN] gi|297150189|gb|EFH30486.1| alanine--tRNA ligase [Lactobacillus jensenii JV-V16] Length = 878 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 337/926 (36%), Positives = 521/926 (56%), Gaps = 86/926 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S R +L+FF+++GH +LPS SLIP +DPTL++ NSG+ K F G P + +T+ Sbjct: 7 SEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K LD+ Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +L+ TVY +D ++ K+W+K +G+ D II++ DNFW + E GPCGP +EIF+D+G Sbjct: 123 DKLFCTVYPKDVDSQKVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ E P +IDTGMGLER+ + Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERVLS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 +LQ+ N++ DLF +I +E+++ G KY N + + ++I DH+R+ SF I DG LP Sbjct: 237 ILQDAPTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGDGALP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+P + M S YPE+++ I++ ++ Sbjct: 297 SNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQKVIK 356 Query: 353 SEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RFG TL+ GL LLD ++ + D+ ++G AFKL+DT+G P ++ + +GL Sbjct: 357 NEEDRFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQDKGL 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F++ ++ Q+ RAR + G Q +G + Sbjct: 417 K-VDKAGFDKEMDAQKERAR-------------------KARGDLQSMG----------R 446 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 +D ++ K + GV A IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 447 QDETLMNIKDKSEFEYGVYEEKHAKLIDIVVDDKLVDKA-DGETATLIFDKTPFYAERGG 505 Query: 527 QLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQN 579 Q+ D G GD + ++TDVQ +H +E+G VL ID Sbjct: 506 QVADHGDIYDQNGD-LVAKVTDVQHAPNDQNLHFVDLVLPMEKG-----KEYVLKIDAHR 559 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R L +H+ATHL+H AL +LG H Q GS + PD LRFD T P+T E++++E V Sbjct: 560 REGLRHSHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLV 619 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I +N+ V T I + E GA AL KY D+VRVV + S CGGTH Sbjct: 620 NQKIWENIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQI-----NDFSIEFCGGTHC 674 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 S+T +I + I+SE +I AG+RRIEA+T ++A +L +D L+ + +K ++ ++ Sbjct: 675 SNTAQIGIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEIKQEVKATKVEDIKT 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVM 813 ++ + EE Q A+ + ++N S + +VN + I + D +L+ + Sbjct: 735 KITSLEEELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAAMADVNGMNDLRELA 794 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872 D + +S +++L + + KA+++I + + LD+ A +L +++A V GGGGGGRP Sbjct: 795 DNWKASNKSDVLVL-ACANDGKANMVISLADAALDKGLKAGNLIKVAAPVF-GGGGGGRP 852 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 +MAQ+GG N +AI V + + K Sbjct: 853 NMAQAGGKNPAGLKEAITAVINEINK 878 >gi|319939471|ref|ZP_08013831.1| alanyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV] gi|319811457|gb|EFW07752.1| alanyl-tRNA synthetase [Streptococcus anginosus 1_2_62CV] Length = 872 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 338/915 (36%), Positives = 502/915 (54%), Gaps = 92/915 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D +++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDHDSYNRWISV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE G E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPEHQGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y +G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G ++ L + +++G FKLYDT+G P+++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAQSIVEELKEKGQSVISGTDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I A Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASVVKGGSMGMQNETLQNI--------TAESHFN 462 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 Y+ +S+ + AIV + VEE SG K +VF +TP Sbjct: 463 YE-----------------------KEALSAKLVAIVADDKEVEEVTSG-KAYLVFAETP 498 Query: 520 FYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + Q+ DVQK G +H V L L ID+ Sbjct: 499 FYAEMGGQVADHGQIFDLAGNLVAQVVDVQKAPNGQPLHTVEV-VAPLALNQEYKLEIDH 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL +LG H +Q GS + LRFD TH + +T+ EL+ IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNVLGKHATQAGSLNEVEFLRFDFTHFQAVTAEELRRIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + + + T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 EVNEKIWEAIDIKTIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 H+ +T EI L IV E I +G RRI A+T + A +++ LK++A+ LKV Q V Sbjct: 673 HMKNTSEIGLFKIVKEEGIGSGTRRILAVTSKEAFEAYRQEEDALKAIATTLKVPQMKEV 732 Query: 758 GR-VEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVDS 806 R VE + E+ R+LQ +A+ K + NV++ + H +F++ +S D+ Sbjct: 733 SRKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSDA 787 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866 L++ D ++K S +++LV EK ++ T+D+ +A +L + A ++ G Sbjct: 788 GALRTFADTWKQKDYSDVLVLVAAIGEKVNVLVASKTKDI----HAGNLIKELAPIV-AG 842 Query: 867 GGGGRPHMAQSGGPN 881 GGG+P MA +GG N Sbjct: 843 RGGGKPDMAMAGGSN 857 >gi|148997564|ref|ZP_01825169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70] gi|168575843|ref|ZP_02721758.1| alanyl-tRNA synthetase [Streptococcus pneumoniae MLV-016] gi|194397245|ref|YP_002038030.1| alanyl-tRNA synthetase [Streptococcus pneumoniae G54] gi|307068035|ref|YP_003877001.1| alanyl-tRNa synthetase [Streptococcus pneumoniae AP200] gi|147756619|gb|EDK63660.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70] gi|183578173|gb|EDT98701.1| alanyl-tRNA synthetase [Streptococcus pneumoniae MLV-016] gi|194356912|gb|ACF55360.1| alanyl-tRNA synthetase [Streptococcus pneumoniae G54] gi|306409572|gb|ADM84999.1| Alanyl-tRNA synthetase [Streptococcus pneumoniae AP200] Length = 872 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 343/925 (37%), Positives = 505/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGNIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ AVS ++F +T Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADYGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K +VN +I S++ D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQLSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGRNQAKIQELLDAVAGKL 872 >gi|311113673|ref|YP_003984895.1| alanine--tRNA ligase [Rothia dentocariosa ATCC 17931] gi|310945167|gb|ADP41461.1| alanine--tRNA ligase [Rothia dentocariosa ATCC 17931] Length = 893 Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust. Identities = 333/921 (36%), Positives = 503/921 (54%), Gaps = 75/921 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I ++EFF+K GH ++PS+SLI N+P MFT +GMVPF F G+E P + T+VQK Sbjct: 6 ISKRWIEFFEKRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 C+R D++ VG+T RH TFF+M GNFSFG YFKE+AI A++LLT D LD Sbjct: 65 CIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTASQDKGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++T+Y+ D EAF +W K G ++I R+ +N+WS + GP GP SEIF+D+G Sbjct: 121 PERLWVTIYEGDNEAFDVWTKTVGFPEERIQRMGMKENYWSTGQPGPAGPDSEIFYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERFI----LPKMSIDTGMGLERMAT 235 G G + + +RYIEIWNLVFMQ+++ +E F LPK +IDTG+G+ER+A Sbjct: 181 AY-GKEGGPAVDDDRYIEIWNLVFMQYQRGEGIGKEDFEILGELPKKNIDTGLGVERLAM 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLRSSSFLI 286 +LQ N Y+ D + ++ A+ +++G KY G+ + V RV+ DH+RSS LI Sbjct: 240 LLQGVENFYETDQVRPVLDAASKLSGKKYHGSESPEDPGYEDDVRMRVVADHIRSSLMLI 299 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG+ P+NEGRGY+LRR+MRRA+ RLLG TEP + L PA M A+P + Sbjct: 300 ADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPILFPASRDAMAGAFPYVADDFER 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 I +E++ F T++ G L+ ++ KD ++G AF L+DT+G P+D+ ++ Sbjct: 360 ISRIAYAEEKAFLHTIETGTERLEEAVATAKKDGSNSVSGAEAFALHDTYGFPIDLTLEM 419 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGL-GSGTTEKIWFSLKEKYGATQFIGYDLL 463 G+ +D +F + + EQR RA+A + GS L ++ G+ F GY L Sbjct: 420 AAEAGVK-VDEKAFRELMAEQRHRAQADAKAKKGSFADLSELRKLVDERGSI-FTGYTEL 477 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 R + ++A+++ G V A +G K+EVV D+TPFYAE Sbjct: 478 R-----------------------TETHLRALLKDGVSVPVAKAGDKIEVVLDETPFYAE 514 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ DTG G+G + + DVQ+ +G+ VH A+V G +V +D Q RR Sbjct: 515 GGGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEAHPGAEVVAQVDVQRRRDG 574 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 HS TH++H AL +LG+ +Q GS LRFD + ++ + + +E+ N I Sbjct: 575 EKAHSGTHIVHAALHQVLGNEATQRGSFNKEGYLRFDFAWGESLSDSAKREVEEVANLAI 634 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N V+ R M +A A GA +L G KY + VR+V + GG S LCGGTHV ++ Sbjct: 635 RDNHEVIAREMPLAEAKALGAMSLFGEKYGNIVRMVEI----GGEFSRELCGGTHVGTSS 690 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--------N 755 EI L +++E S+ +G RR+EA+ G + HL + + L +KV Sbjct: 691 EIGSLTLLTEQSVGSGNRRVEALVGMNSFEHLAAERTLVNQLTGMMKVQSSAELPEKINQ 750 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVM 813 + +++ +E KL+ + KLQ L + I V ++H E+D+ ++S+ Sbjct: 751 TLAKLKSAEKELEKLR----REKLQAEAGKLLENAQTIGSVRVLTHHAGELDANGVRSLA 806 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGR 871 L+ + S ++ V++V T + A L RL+A +L GGGGGG+ Sbjct: 807 LDLRSRFGSEAAVVAVTGVANGRPVILVATNEGAREAGIKAGALVRLAAGIL-GGGGGGK 865 Query: 872 PHMAQSGGPNGNKADQAIAGV 892 +AQ GG + +K +A+ + Sbjct: 866 DDVAQGGGQDASKVSEALDAI 886 >gi|282932649|ref|ZP_06338063.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1] gi|281303223|gb|EFA95411.1| alanine--tRNA ligase [Lactobacillus jensenii 208-1] Length = 878 Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust. Identities = 337/926 (36%), Positives = 521/926 (56%), Gaps = 86/926 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S R +L+FF+++GH +LPS SLIP +DPTL++ NSG+ K F G P + +T+ Sbjct: 7 SEFRQMYLDFFKEHGHMVLPSQSLIPQDDPTLLWINSGVATMKKYFDGSVVPKNRRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K LD+ Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +L+ TVY +D ++ K+W+K +G+ D II++ DNFW + E GPCGP +EIF+D+G Sbjct: 123 DKLFCTVYPKDVDSQKVWEK-AGMPKDHIIKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ E P +IDTGMGLER+ + Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGEYVDQPHKNIDTGMGLERVLS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 +LQ+ N++ DLF +I +E+++ G KY N + + ++I DH+R+ SF I DG LP Sbjct: 237 ILQDAPTNFETDLFLPMIHETEKMSAGKKYGANKEDDIAFKIIADHVRAVSFAIGDGALP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+P + M S YPE+++ I++ ++ Sbjct: 297 SNSGRGYVLRRLIRRADLNGKRLGINGAFLYKLVPVVGKIMESHYPEVLKQASFIQKVIK 356 Query: 353 SEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++RFG TL+ GL LLD ++ + D+ ++G AFKL+DT+G P ++ + +GL Sbjct: 357 NEEDRFGATLESGLSLLDDLIEKASASDDKTISGKDAFKLFDTYGFPYELTFEAAQDKGL 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F++ ++ Q+ RAR + G Q +G + Sbjct: 417 K-VDKAGFDKEMDAQKERAR-------------------KARGDLQSMG----------R 446 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 +D ++ K + GV A IV ++V++A G+ ++FD+TPFYAE GG Sbjct: 447 QDETLMNIKDKSEFEYGVYEEKHAKLIDIVVDDKLVDKA-DGETATLIFDKTPFYAERGG 505 Query: 527 QLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHA----IVERGILRTEMSLVLTIDYQN 579 Q+ D G GD + ++TDVQ +H +E+G VL ID Sbjct: 506 QVADHGDIYDQNGD-LVAKVTDVQHAPNDQNLHFVDLVLPMEKG-----KEYVLKIDAHR 559 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R L +H+ATHL+H AL +LG H Q GS + PD LRFD T P+T E++++E V Sbjct: 560 REGLCHSHTATHLIHAALREVLGEHTHQAGSLVDPDFLRFDFTAIDPMTPREIETVERLV 619 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I +N+ V T I + E GA AL KY D+VRVV + S CGGTH Sbjct: 620 NQKIWENIDVKTTITDPETGKKMGALALFNGKYGDKVRVVQI-----NDFSIEFCGGTHC 674 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 S+T +I + I+SE +I AG+RRIEA+T ++A +L +D L+ + +K ++ ++ Sbjct: 675 SNTAQIGIFKIISEQAIGAGMRRIEAVTSEKAYEYLTNRDALLEEIKQEVKATKVEDIKT 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD---SKELKSVM 813 ++ + EE Q A+ + ++N S + +VN + I + D +L+ + Sbjct: 735 KITSLEEELHASQKKAAELESEINAAKASDIFENVQEVNGLKVIAAMADVNGMNDLRELA 794 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872 D + +S +++L + + KA+++I + + LD+ A +L +++A V GGGGGGRP Sbjct: 795 DNWKASNKSDVLVL-ACANDGKANMVISLADAALDKGLKAGNLIKVAAPVF-GGGGGGRP 852 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 +MAQ+GG N +AI V + + K Sbjct: 853 NMAQAGGKNPAGLKEAITAVINEINK 878 >gi|239939940|ref|ZP_04691877.1| alanyl-tRNA synthetase [Streptomyces roseosporus NRRL 15998] Length = 868 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 343/909 (37%), Positives = 504/909 (55%), Gaps = 76/909 (8%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 +PS+SLI +DPTL+ +GMVPFK F G+ KP VT+VQKCVR D++ VG+ Sbjct: 1 MPSASLI-ADDPTLLLVPAGMVPFKPYFLGEVKPPAPRVTSVQKCVRT----PDIEEVGK 55 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137 T RH TFF+M GNFSFG YFKE AIQLAW+ LT + LD +L+ITVY +D+EA Sbjct: 56 TTRHGTFFQMCGNFSFGDYFKEGAIQLAWEALTNSVEDGGYGLDPEKLWITVYLDDDEAE 115 Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY 197 ++W+ G+ A++I R+ DNFWSM GPCGPCSEI +D+G G G + ERY Sbjct: 116 QIWRDKIGVPAERIQRLGKKDNFWSMGVPGPCGPCSEINYDRGPEF-GVEGGPAVNDERY 174 Query: 198 IEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251 +EIWNLVFMQ+E+ + +E F LP +IDTG+GLER+A +LQ N Y+ D + Sbjct: 175 VEIWNLVFMQYERGAGDGKEDFPILGDLPSKNIDTGLGLERLAMILQGVQNMYETDTLRV 234 Query: 252 LIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309 ++ + ++TG++Y E V+ RV+ DH+R+S LI DG+ P NEGRGYVLRRIMRRA+ Sbjct: 235 VMDKATELTGVRYGAENGTDVSLRVVADHIRTSVMLIGDGVTPGNEGRGYVLRRIMRRAI 294 Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369 RLLG T ++ L+ + MG YPELI + IE +E+ F K L G +L Sbjct: 295 RNMRLLGATGTVVKDLIDVVIDTMGQQYPELITDRKRIETVALAEEAAFLKALKGGTNIL 354 Query: 370 DGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427 + ++ ++L GD AF L+DT G P+D+ ++ +GL+ +D F + ++EQR Sbjct: 355 ETAVTETKAAGGKVLAGDKAFLLHDTWGFPIDLTLEMAAEQGLS-VDEDGFRRLMQEQRD 413 Query: 428 RARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486 +A+A + +G + + + + GAT+F GY L G Sbjct: 414 KAKADARAKKTGHADLSAYREVADTAGATEFTGYTSLAGE-------------------- 453 Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITD 545 S+IV +V G A G +VEVV D+TPFYAE GGQL DTG + G +++ D Sbjct: 454 --STIVGLLVD-GVPSPAATEGDEVEVVLDRTPFYAEGGGQLADTGRIRLDTGAVIEVRD 510 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 VQK G+ VH +V+ G + + +ID RR ++ HSATHL H AL LG Sbjct: 511 VQKPVPGVHVHKGVVQVGEVTVGAPVFASIDATRRRAIARAHSATHLTHQALRDALGPTA 570 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS +P RFD + L +E +N+++++ L V +M+ ++A GA Sbjct: 571 AQAGSENSPGRFRFDFGSPAAVPGTVLTDVEQRINEVLSRELDVQAEVMSIDEAKKQGAI 630 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 A G KY +RVRVV++ G S LCGGTHV +T ++ L+ ++ ESSI +G+RRIEA Sbjct: 631 AEFGEKYGERVRVVTI-----GDFSKELCGGTHVHNTAQLGLVKLLGESSIGSGVRRIEA 685 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQ--- 780 + G A + L + + L +K GR EE+ E+ + +L A+++++ Sbjct: 686 LVGVDAYNFLAKEHTVVAQLQELVK-------GRPEELPEKIAGMLGKLKDAEKEIEKFR 738 Query: 781 ----LNVEDLSCHKIADVNFMSHIISEV----DSKELKSVMDALQKKIQSGIIMLVGISK 832 L DV ++ + +V + +L+ ++ ++ +IQ G +V + Sbjct: 739 AEKVLAAAAGLADSAKDVRGVALVTGQVPDGTSADDLRKLVLDVRGRIQGGRPAVVALFT 798 Query: 833 EKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 L V+ + R A DL R +AK L GGGGGG+P +AQ GG N A+ Sbjct: 799 TANGRPLTVIATNEAARERGLKAGDLVRTAAKTL-GGGGGGKPDVAQGGGTNPAAIGDAV 857 Query: 890 AGVASFLKK 898 A V + + Sbjct: 858 AAVERLVSE 866 >gi|225859149|ref|YP_002740659.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 70585] gi|225720312|gb|ACO16166.1| alanyl-tRNA synthetase [Streptococcus pneumoniae 70585] Length = 872 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 343/925 (37%), Positives = 503/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ H + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y +Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ AVS ++F +T Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498 Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + I +T+VQK G +H V L +L ID Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYILAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|323352646|ref|ZP_08087616.1| alanine--tRNA ligase [Streptococcus sanguinis VMC66] gi|322121682|gb|EFX93428.1| alanine--tRNA ligase [Streptococcus sanguinis VMC66] Length = 872 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 346/932 (37%), Positives = 514/932 (55%), Gaps = 96/932 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G + +++ L G++ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAETIVADLKAKGQNVIAGQDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 PFYAE GGQ+ D G I DG + Q+TDVQK G +H V L S L I Sbjct: 498 PFYAEMGGQVADHG-QIFDGAGKLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEI 555 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D+ R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++I Sbjct: 556 DHSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAI 615 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCG Sbjct: 616 EQEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCG 670 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-G 754 GTHV +T EI + IV E I +G RRI A+T + A ++E LK++A+ LK Q Sbjct: 671 GTHVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIK 730 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEV 804 V +VE + E+ R+LQ +A+ K + +V++ + H+ F++ +S Sbjct: 731 EVPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKDVQEANGHR-----FIASQVSVS 785 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864 D+ L++ D ++K S +++LV +K + T+D+ +A +L + A ++ Sbjct: 786 DAGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV- 840 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +A VA L Sbjct: 841 DGRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|167753580|ref|ZP_02425707.1| hypothetical protein ALIPUT_01857 [Alistipes putredinis DSM 17216] gi|167658205|gb|EDS02335.1| hypothetical protein ALIPUT_01857 [Alistipes putredinis DSM 17216] Length = 847 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 331/888 (37%), Positives = 497/888 (55%), Gaps = 79/888 (8%) Query: 28 LIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHH 87 ++ NDPTLMFTN+GM FK+IF G Y QKC+R GKHNDL+ VG HH Sbjct: 1 MVVKNDPTLMFTNAGMNQFKDIFLGNIPRPYPRAADTQKCLRVSGKHNDLEEVGHDTYHH 60 Query: 88 TFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDE--------DEEAFKL 139 T FEMLGN+SFG YFK+ AI AW+LLT + LD+ R+Y TV++ D+EA+ + Sbjct: 61 TMFEMLGNWSFGDYFKKEAIGWAWELLTGVYGLDKSRMYATVFEGSPEDGVPFDQEAYDI 120 Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPGGLPGS---SEEGE 195 W + L AD IIR +DNFW M + GPCGPCSEI +D + E +PG ++ Sbjct: 121 W--LQYLPADHIIRGNKHDNFWEMGDVGPCGPCSEIHYDLRDESEIAAVPGREMVNQGSP 178 Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255 IEIWNLVFMQF ++ L IDTGMG ER+ +LQ K +NYD D+F+ IQ Sbjct: 179 LVIEIWNLVFMQFNRKANGSLEPLAANCIDTGMGFERLCMILQGKKSNYDTDVFQPTIQR 238 Query: 256 SEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA- 312 ++G Y + V RV+ DHLR+ SF IADG LP+N GYV+RRI+RRA+ Y Sbjct: 239 IAAMSGKTYGADEKCDVAMRVVADHLRAISFSIADGQLPSNVKAGYVIRRILRRAVRYGY 298 Query: 313 RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV 372 LG+ EP + L+ L +MG +PEL + LIE+ + E+ F +TL G+ LLDGV Sbjct: 299 TYLGFNEPFICRLVAGLVDQMGGQFPELKAQQTLIEKVIEEEESSFLRTLATGINLLDGV 358 Query: 373 LSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430 ++ + K E ++G AF LYDT+G P+D+ + I +G+ +D+ +F + L+ Q+ R+R Sbjct: 359 MAEVRKSGGERISGKDAFLLYDTYGFPIDLTELIAREQGIE-VDLEAFEKELQAQKERSR 417 Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSS 490 + W L ++FIGYD L + R+V Sbjct: 418 N-----AAAVDTDDWKELIH-IKQSEFIGYDTLSAEVKIARYRRV--------------- 456 Query: 491 IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550 +G + ++VFD+TPFY +GGQ+GD G R+ + +K+ Sbjct: 457 -----SSKGRV--------SYQLVFDRTPFYGNSGGQIGDIGYIETANERIPVVATEKE- 502 Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610 G+ +H IV + E + + +D + R+ + NH+ATHL+H AL +LG+HV Q GS Sbjct: 503 NGLIIH--IVTQLPENPEATFMAVVDPEKRQAAANNHTATHLMHEALRKVLGTHVEQKGS 560 Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV-VTRIMNREDAIASGAAALLG 669 +TP+ LRFD +H + +T EL+ +E VN I N P+ R +E+A A+GA L G Sbjct: 561 LVTPEYLRFDFSHFQKVTHEELRRVEQLVNRAIRANYPLEEKRDATKEEAAAAGAMMLFG 620 Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729 KY DRVR+V S LCGGTHVS+TG I I++ES+I AG+RRIEA TG Sbjct: 621 EKYGDRVRMVRFG------TSVELCGGTHVSATGNIGFFKILNESAISAGVRRIEATTGA 674 Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL-IHAKRKLQLNVEDLSC 788 +A + ++ ++++A +L Q ++ +++I E L+ + A R+ Q V + + Sbjct: 675 KAEEVIYAAEDTMRNVADYLNNPQ--ILQSIKKIMESNEALKHEMEAIRREQ--VAEWAA 730 Query: 789 HKIADVNF----MSHIISEVDSKE--LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV 842 KI D M + ++ D + +K + A++ + ++ I++++G + K ++ + + Sbjct: 731 -KIVDSTPERGGMRLMATQTDRRPDFIKDLAFAVRSRSKN-IVLVIGSINDGKPTLTVAL 788 Query: 843 TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +D++ + NA + R +AK + GGGGG+P +A +GG N + AI Sbjct: 789 GDDIVAQGVNAGVVVREAAKAI-NGGGGGQPFLATAGGKNPDGIQAAI 835 >gi|323465940|gb|ADX69627.1| Alanyl-tRNA synthetase [Lactobacillus helveticus H10] Length = 894 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 346/929 (37%), Positives = 518/929 (55%), Gaps = 92/929 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S R FL+FF+ +GH ++PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 22 SEFRQMFLDFFKDHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 81 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YF++ AI AW+ LT K L + Sbjct: 82 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRDEAIPWAWEFLTSPKWLGLPK 137 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY TVY +D ++ ++W+K +G+ AD I+++ DNFW + E GPCGP +EIF+D+G Sbjct: 138 EKLYCTVYPKDVDSQRVWEK-AGMPADHIVKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 193 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 194 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLS 251 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 +LQ+ N++ DLF +I A+E++T G KY N + ++I DH+R+ SF IADG LP Sbjct: 252 ILQDAPTNFETDLFLPIIHATEEMTDGKKYGENKEDTTAFKIIADHVRAVSFAIADGALP 311 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE ++ Sbjct: 312 SNSGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIENVIQ 371 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF TLD GL LLD ++ K D+ ++G AFK++DT+G P ++ + GL Sbjct: 372 NEEERFQATLDTGLTLLDDLIDKAKKSDDKTISGKDAFKMFDTYGFPYELTFESAQDAGL 431 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F+ ++ Q+ RAR L S G + ++K+K S F Sbjct: 432 K-VDKKGFDAEMQAQKERARKARGALQSMGRQDVTLMNIKDK--------------SVFE 476 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ ++P L + IV ++V++A G+ +VFD+TPFYAE GGQ+ Sbjct: 477 RD----TYEEPHAKLLD--------IVVDDKLVDKA-DGEHATLVFDKTPFYAERGGQVA 523 Query: 530 DTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSI 585 D G DG + ++TDVQ +H + IL E VL ID + R L Sbjct: 524 DHGNIYDQDGELVAKVTDVQHAPNDQNLHFVDL---ILPMEKGKEYVLKIDKERREGLRH 580 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E+ VN I + Sbjct: 581 SHSATHLLHAALRQVLGEHTHQAGSLVDPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 640 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T I E+ GA AL KY +VRVV + G SS CGGTH S+T +I Sbjct: 641 AIDVKTTITTPEEGEKMGALALFDGKYGHKVRVVQM-----GDFSSEFCGGTHCSNTNQI 695 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + I+SES++ AG+RRIEA+T ++A +L + L + + +K ++ N++ +++ + Sbjct: 696 GIFKIISESAVGAGMRRIEAVTSKKAYEYLANRSSLLDDIQADVKATKPNNIIDKIDSLE 755 Query: 765 EEYRKLQLIHAKRKLQLN-------------VEDLSC-HKIADVNFMSHIISEVDSKELK 810 + Q Q+N DL+ +ADVN M+ +L+ Sbjct: 756 SDLHDCQKQVEALTKQINQAKAGQIFDDVKQAGDLTVIATVADVNGMN---------DLR 806 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 + D + +S +++L + KA+++I + + LD+ A DL + +A + GGGGG Sbjct: 807 ELADNWKSGNKSDVLVLAA-ENDGKANMIISLGQKALDKGLKAGDLIKKAAPIF-GGGGG 864 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GRP+MAQ+GG + AI V + K Sbjct: 865 GRPNMAQAGGKKPEGLNDAIKAVIEEISK 893 >gi|256391573|ref|YP_003113137.1| alanyl-tRNA synthetase [Catenulispora acidiphila DSM 44928] gi|256357799|gb|ACU71296.1| alanyl-tRNA synthetase [Catenulispora acidiphila DSM 44928] Length = 889 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 304/786 (38%), Positives = 447/786 (56%), Gaps = 57/786 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I +L+FFQK GH ++PS+SLI NDPT + T +GM PFK F G++ + T+V Sbjct: 4 AEIHRRWLDFFQKKGHTVVPSASLI-SNDPTTLLTIAGMAPFKPYFLGEQPAPWPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH +FF+M GNFSFG YFKE AI +AW+L T F Sbjct: 63 QKCVRT----LDIEEVGKTTRHGSFFQMCGNFSFGDYFKETAIPMAWELCTTPVSEGGFG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD ++++TVY +D+EA ++WKK +G A++I R+ +N+WSM GPCGPCSE+F+D+ Sbjct: 119 LDPEKIWVTVYLDDDEAEEIWKK-AGFPAERIQRLGMKENYWSMGVPGPCGPCSELFYDR 177 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER--FI----LPKMSIDTGMGLERM 233 G G G + ERY+E WNLVFMQFE+ ++ F LP SIDTG+GLER+ Sbjct: 178 GPEF-GEAGGPAVNDERYMEFWNLVFMQFERGAGGDKGGFPILGELPSKSIDTGLGLERL 236 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 AT+LQ N Y+ID + ++ + + G+ Y + V+ RV+ DH+++++ +I DGI Sbjct: 237 ATILQGVNNLYEIDTSRAILDKAASIAGVTYGRDTRTDVSLRVVTDHVKTATMMIGDGIT 296 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRR+MRRA+ RLLG + L+ MG AYPELI I Sbjct: 297 PGNEGRGYVLRRLMRRAIRNMRLLGAHGATIKDLVEITIGAMGQAYPELIADASRIVAVA 356 Query: 352 RSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G + + V + + +GD AFKL+DT G P+D+ ++ G Sbjct: 357 VAEETSFLQTLRTGSAMFETVADEAKASGSAVFSGDQAFKLHDTFGFPIDLTLEMASEAG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L+ +D F + ++EQR +A+A + +G + + L + G + F GY Sbjct: 417 LS-VDEEGFRRLMKEQRDQAKADARAKKTGHADMSAYRELLDAAGPSAFTGY-------- 467 Query: 469 MKEDRKVLCQKPPIDLTNGVSS--IVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + VSS ++KA++ G++ A G +VE+V D+TPFYAE GG Sbjct: 468 -----------------HEVSSEGLLKAMLVNGQVGSSAKPGDEVELVLDRTPFYAEGGG 510 Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G +G+G ++ DVQK + H AIV G + +D R +S Sbjct: 511 QLADHGLIRLGNGALAEVVDVQKPVGDLIAHRAIVRDGEVVLGAEAWGEVDTARRAAISR 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 H+ATH++H A +LG +Q GS +P RFD + + L +E VN+++ Sbjct: 571 AHTATHMVHKAFRELLGETATQAGSENSPGRFRFDFASPGAVPHSVLADVEQRVNELLID 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +L V ++M++ +A A GA AL G KY DRVRVVSV G + LCGGTHV +TG + Sbjct: 631 DLSVTAQVMSQPEAKAMGAMALFGEKYGDRVRVVSV-----GEWAHELCGGTHVDNTGRL 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ ++SESSI +G+RR+EA+ G A + L + + LA +K +V RV I Sbjct: 686 GLVKLLSESSIGSGVRRVEALVGTDAYNFLAREHVLVSQLAEVVKARPEELVERVGGIMT 745 Query: 766 EYRKLQ 771 + R + Sbjct: 746 KLRDAE 751 >gi|148993058|ref|ZP_01822652.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68] gi|168489547|ref|ZP_02713746.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP195] gi|147928259|gb|EDK79276.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP9-BS68] gi|183571933|gb|EDT92461.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP195] gi|332073690|gb|EGI84169.1| alanyl-tRNA synthetase [Streptococcus pneumoniae GA17570] Length = 872 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 343/925 (37%), Positives = 503/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ H + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ + +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDSSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y +Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ AVS ++F +T Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498 Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + I +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|317505218|ref|ZP_07963150.1| alanine--tRNA ligase [Prevotella salivae DSM 15606] gi|315663647|gb|EFV03382.1| alanine--tRNA ligase [Prevotella salivae DSM 15606] Length = 916 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 332/925 (35%), Positives = 497/925 (53%), Gaps = 99/925 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + +R +F +FF+ H+++ S+ ++ +DPTLMFTN+GM +K+I G + P + Sbjct: 30 MMTANEVRESFKKFFESKEHKIVASAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPG-KD 88 Query: 61 VTTV--QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 V V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L Sbjct: 89 VRRVDSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEGAIDFAWEYLVDVL 148 Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L+ LY+TV++ D+EA W K + AD II +DNFW M +TGPCG Sbjct: 149 HLNPEDLYVTVFEGAPEEGLKRDDEAASYWAK--HVPADHIINGNKHDNFWEMGDTGPCG 206 Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PC+EI D + LPG +++ + IEIWN+VFMQF ++ LP IDT Sbjct: 207 PCTEIHVDSRTPEEKAKLPGRELVNKDNPQVIEIWNIVFMQFNRKADGSLEPLPMHVIDT 266 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----------EGNN-----IVN 271 GMG ER+ +LQ+K +NYD D+F+ +I+ E ++G KY EG + + Sbjct: 267 GMGFERLVRMLQDKHSNYDTDIFQPVIKQIELLSGKKYGFTTPTGENGEGKDEQEKIDIA 326 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ YA L E + L+P L Sbjct: 327 MRVVADHLRAVAFSIADGQLPSNAKAGYVIRRILRRAVRYAYTFLDQKEAFLYKLVPVLV 386 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVA 387 EMG AYPEL + LI ++ E++ F +TL++G+ LL+G + L GK E L+G A Sbjct: 387 QEMGEAYPELSAQQELISRVMKEEEDSFLRTLEKGINLLNGDMDELKAHGKTE-LDGTSA 445 Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447 F+L+DT+G PLD+ + ++C +D F++ + +Q++RAR ++ + +G E + Sbjct: 446 FRLFDTYGFPLDLTE-LICREHGYTVDEKGFDEEMAKQKARAR-NAAAVENGDWEVV--- 500 Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507 + G F+GYD + + RKV +K Sbjct: 501 ---RDGEQVFVGYDYTEYTCHILRYRKVTQKKNTF------------------------- 532 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 E+V D TPFY E GGQ+GD G + + I D K+ +H IV+ Sbjct: 533 ---YEIVLDYTPFYGEMGGQVGDQGTLVSANETINIVDT-KRENNQSIH--IVKELPKDI 586 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 E + +D + R + NH+ATHLL +AL ILG HV Q GS + P LRFD +H + + Sbjct: 587 EAEFMACVDVEKRNGSAANHTATHLLDYALKQILGDHVEQKGSYVDPTTLRFDFSHFQKV 646 Query: 628 TSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + +L+ +E VN +I ++ P+ R E+A GA AL G KY D+VRVV Sbjct: 647 SDEQLRQVERLVNKMIREDYPLDEHRDTPLEEAKELGAVALFGEKYGDKVRVVRFG---- 702 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 S CGG H STG+I I+SESS+ AGIRRIEA+TG + + + L Sbjct: 703 --PSCEFCGGIHAKSTGQIGFFKIISESSVAAGIRRIEALTGVACEDTIYALQDTMNDLK 760 Query: 747 SF------LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800 S LK + +G +E+ +E K Q +R V+D + +VN + I Sbjct: 761 SMFNNAKDLKATLLKFIGEHDEMRKEIEKFQAQAVER-----VKDELLKRAQNVNGVQVI 815 Query: 801 --ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLA 856 + ++ K + L++ + ++ ++G + K + ++ ++D++ + NA + Sbjct: 816 KAVLPLEPAAAKDLAFKLRETLNEKLVAVIGSTAGDKPLLTVMFSDDMVKDYALNAGKII 875 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPN 881 R +AK++ GGGGG+PH AQ+GG N Sbjct: 876 REAAKLI-QGGGGGQPHYAQAGGKN 899 >gi|188995245|ref|YP_001929497.1| alanyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277] gi|188594925|dbj|BAG33900.1| alanyl-tRNA synthetase [Porphyromonas gingivalis ATCC 33277] Length = 876 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 337/922 (36%), Positives = 503/922 (54%), Gaps = 90/922 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF GH+++PS+ ++ DPTLMFTN+GM FK+I G + Y Sbjct: 1 MLTSKEIRESFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D +RLY TV+ D D+EA W + L ++II +DNFW M +TGPCGPC Sbjct: 121 DPQRLYATVFEGSPEEGLDRDDEAASYWAQF--LPEERIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D+ GL ++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADSSLTPLPHKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI A +TG+ Y + + + RV+ DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIHALATMTGIGYGEDSASDIAMRVVADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYT-----EPLMMHLLPALCTEMGSAYPELI 341 DG LP+N GYV+RRI+RRA+ Y GYT E M LLP L MG AYPEL Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRY----GYTFLHCREAFMYRLLPTLIDTMGDAYPELQ 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399 + LI ++ E+E F +TL+ G+ LL+ ++ +L+G AF+LYDT G PLD Sbjct: 355 AQRELISRVIKEEEESFLRTLETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLD 414 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + IL G+ +D F+ +++Q+ RAR ++ + +G W L+E G ++F G Sbjct: 415 LTALILSENGMT-VDESGFDTEMQKQKERAR-NAAAVEAGD----WVVLRE--GESKFSG 466 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD F + + ++L + + Q+ + + +VV TP Sbjct: 467 YD------FTETETEILR--------------YRQVKQKNK--------EYFQVVLLDTP 498 Query: 520 FYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 FYAE GGQ+GD+G I + G+ I D K+ + VH ++++ T + V I+ Sbjct: 499 FYAEMGGQVGDSGQLIDESGVAYDIFDT-KRENNLSVH--LMKKLPESTTDTFVARINQD 555 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 RRQ NH+ATHLLH AL +LG+HV Q GS ++P+ LRFD +H ++ E++ +E+ Sbjct: 556 KRRQAEANHTATHLLHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEEL 615 Query: 639 VNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 V++ I + R + +A A GA AL G KY + VRV+ S LCGGT Sbjct: 616 VSERIRADFQREEFRDVPIAEAQAMGAMALFGEKYGEEVRVLKYG------SSVELCGGT 669 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 H+ STG I IV+ESSI +G+RRIEA+TG A + +++ L ++ + N++ Sbjct: 670 HIPSTGMIGTFRIVTESSIASGVRRIEAVTGIGAERFIYEKEDILLAVKELFN-NNPNLI 728 Query: 758 GRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSKEL 809 ++++ EE L Q+ K + L + + DV F+ I E ++ Sbjct: 729 KSIKKMLEEDASLKKQIADMKHERMLKFKKSLLEQ--DVRRRGIRLFLFQEIMEAETA-- 784 Query: 810 KSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867 K + + ++Q +++ G ++ +K ++ +++++DL + +A L R +AK + GG Sbjct: 785 KDIAFQIAGELQESFVLIAGTTEGGEKCALTVMLSKDLTEGGMDAAKLVRSAAKHI-QGG 843 Query: 868 GGGRPHMAQSGGPNGNKADQAI 889 GGG+PH A +GG N AI Sbjct: 844 GGGQPHFATAGGKNPKGLPAAI 865 >gi|258645603|ref|ZP_05733072.1| alanine--tRNA ligase [Dialister invisus DSM 15470] gi|260402961|gb|EEW96508.1| alanine--tRNA ligase [Dialister invisus DSM 15470] Length = 868 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 344/907 (37%), Positives = 502/907 (55%), Gaps = 75/907 (8%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L FF+ K H L S LIP +DP+L+ +GM P K FTG+ +P VTT Sbjct: 4 NDIREAYLSFFETKKEHLRLKSFPLIPKDDPSLLLIGAGMAPLKPYFTGKVEPPCHRVTT 63 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R G D++NVGRT RHHTFFEMLGNFSFG YFK+ AI AW+ LT+ L+ Sbjct: 64 SQKCIRTG----DIENVGRTARHHTFFEMLGNFSFGDYFKKEAIAWAWEFLTEVIKLESS 119 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RLY+T+Y +D E++ W + GL I ++ DNFW + E GPCGP SEIF+DQGE Sbjct: 120 RLYVTIYPDDRESYDYWHDMIGLPESHIYPLS--DNFWEIGE-GPCGPDSEIFYDQGEEF 176 Query: 184 PGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P + +G+R++EIWNLVF QF+QQ L K +IDTG GLER++ VLQ+K Sbjct: 177 -GTDPENQMGGDGDRFLEIWNLVFSQFDQQKDGSYRPLDKKNIDTGAGLERLSAVLQKKK 235 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NN++ DLF +IQ + + G+ Y + V +VI DH R+ + +IADGILP+NEGRGY Sbjct: 236 NNFETDLFFPIIQEAAGLAGVPYGRSTESDVALKVISDHTRAITNMIADGILPSNEGRGY 295 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA+ Y +L+G + + ++ + M AYPEL++ + I++ E+ RF Sbjct: 296 VLRRVLRRAVRYGKLIGIDDAFLGRMIDVVVKMMKPAYPELMEKQAFIKKVAGVEENRFH 355 Query: 360 KTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL+ G+ LL +L K + IL GD FKLYDT+G P ++ ++I +G+ ID Sbjct: 356 ATLNAGMDLLAEMLEETLKKQRRILTGDRVFKLYDTYGFPWELTEEIAKEQGIE-IDKDG 414 Query: 418 FNQALEEQRSRARAH----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 F A+ EQ+ RARA S + + T K L+ ED Sbjct: 415 FAAAMAEQKERARAARTKVSARIATPDTTK-------------------LKSESMTTED- 454 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 T+G + I+ + + G+ V+ A G+ + V+ PF+AE GGQ+GD+G Sbjct: 455 -----------TDGDTEIL-LLGKDGQAVQSAADGENITVILKNNPFHAEGGGQIGDSGV 502 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G+ + I D +K +GI V G++ T ++ +D + R ++ NH+ THLL Sbjct: 503 LEGNSGIISIEDTKKLPDGIVYCIGTVTEGVISTGETVKTVVDRERREDIARNHTGTHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 AL +LGS V+Q GS + P+ LRFD T + +T ++ +E VN+ I ++ + Sbjct: 563 QAALRRVLGSQVNQAGSLVLPEKLRFDFTWPEAVTDKQIAEVERIVNEQIWKSTTLDIDE 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 M A GA AL G KY + VRVV V S+ LCGG+HV +TGEI I+SE Sbjct: 623 MPIAKAKEMGAIALFGEKYGNIVRVVRVPD-----FSTELCGGSHVFNTGEIGCFRIISE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-----------E 762 S I +GIRRIEAITG+ A ++ + L+ A+ LKV + G++E E Sbjct: 678 SGIGSGIRRIEAITGKAAYESMLADRKLLRESAALLKVKVEEIPGKIEKNLAALKEAERE 737 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 I E ++ Q A L NV + + ++F I+ + EL+ D ++ K Sbjct: 738 I-ERFKNQQTKDALGNLLKNVREKNG-----ISFFGAIVPAANMDELRKAADIVKGKFPR 791 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G +L + EK V + E + + + +AK+ GGGGGG+P +AQ+GG N Sbjct: 792 GAFILGAAAGEKVNLVGMASEEAVKTGIHMGKVVSAAAKIC-GGGGGGKPAVAQAGGKNI 850 Query: 883 NKADQAI 889 ++ AI Sbjct: 851 SELQNAI 857 >gi|255532429|ref|YP_003092801.1| alanyl-tRNA synthetase [Pedobacter heparinus DSM 2366] gi|255345413|gb|ACU04739.1| alanyl-tRNA synthetase [Pedobacter heparinus DSM 2366] Length = 900 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 333/941 (35%), Positives = 519/941 (55%), Gaps = 111/941 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +L+FF+ H ++ S+ ++ NDPTLMFTN+GM FK++F G+ Y VT Q+ Sbjct: 6 IRQAYLKFFESKQHHIVASAPIVVKNDPTLMFTNAGMNQFKDLFLGEAPIKYPRVTDTQR 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI +W+LLT+ + + + +LY Sbjct: 66 CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAIAWSWELLTEVYKIPKDKLY 125 Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +++++ DE EA++LWK+ + ++II DNFW M +TGPCGPCSEI D Sbjct: 126 VSIFEGDEKEGLPRDTEAYELWKQY--VPEERIILGNKKDNFWEMGDTGPCGPCSEIHVD 183 Query: 179 QGECIPG-------GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 C P G + + + IEIWN VFMQF + +LP +DTGMG E Sbjct: 184 ---CRPDDERKLVEGKTLVNADHPQVIEIWNNVFMQFNRLKDGSLQLLPAQHVDTGMGFE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289 R+ VLQ K++NYD D+F+ LIQ G++Y N + RV+ DH+R+ +F+IADG Sbjct: 241 RLVRVLQGKSSNYDTDVFQPLIQFIAAKAGIQYGMNEQTDIAMRVMADHVRAIAFVIADG 300 Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+N GYV+RRI+RRA+ YA L +P + L+P L + + EL + ++ Sbjct: 301 QLPSNNKAGYVIRRILRRAVRYAYTFLNLKDPFLNELVPVLAEQFKGVFEELALQQDFVQ 360 Query: 349 ETLRSEDERFGKTLDRGLVLLDG-------------------------VLSHLGKDEILN 383 + + E+ F +TL G+ D V S L +++ Sbjct: 361 KVILEEEVSFLRTLATGIQRFDSYTKKQAEFLMSENAIDPEKSFEDQWVHSILKDQMVIS 420 Query: 384 GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK 443 G+ AF+L DT+G P+D+ + ++ +D+ +N+AL +Q+ R+RA + + +G Sbjct: 421 GEFAFELNDTYGFPIDLTE-LMAREKRWSVDMEEYNKALLKQKERSRA-ATAVDTGD--- 475 Query: 444 IWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE 503 W + +F+GYD + + R+V Sbjct: 476 -WVLVNPDL-EVEFVGYDDAEAETEIIKYRRV---------------------------- 505 Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL---QITDVQKKAEGIFVHHAIV 560 A ++ ++V +TPFYAE+GGQ+GDTG + D RL +ITD KK G+ VH+A Sbjct: 506 SAKGKEQYQIVLSKTPFYAESGGQVGDTG-RLEDHSRLFFVEITDT-KKENGVIVHYADT 563 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 + V+ +N+R LS NH+ATHLLH AL +LGSHV+Q GS + PD LRF Sbjct: 564 LPEDIEGHFWAVID---ENKRLLSQDNHTATHLLHAALKKVLGSHVNQKGSLVNPDYLRF 620 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRV 678 D +H +T EL IE VN I +N+P+ R + + AI+SG AL G KY D VR+ Sbjct: 621 DFSHFARVTDEELSQIEHLVNQKIRENIPLKEQRYVPYDQAISSGVTALFGEKYGDLVRI 680 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 ++ ++D +S LCGGTHV +TG+I I++ES++ AG+RRIEAIT +A + ++ Q Sbjct: 681 IT--FDDH--YSKELCGGTHVQATGQIGYFKIIAESAVAAGVRRIEAITADKAEAFVLAQ 736 Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ--LNVEDLSCHKIADVNF 796 +++L L LK ++ ++ V + EE +L+ K L+ N++ H + +N Sbjct: 737 NKELNELRELLKGNK-DLKAAVAGLIEENNRLKKDAEKAVLEQSANLKHEIVHHLKTING 795 Query: 797 MSHIISEVD---SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DR-FN 851 ++ I + VD + +K++ A++ + ++ + + K + ++++E+L+ DR N Sbjct: 796 INLIATHVDLPNADAVKNLAYAVKDMVDDLFLVFTTLI-DDKPGITVMLSENLVKDRGLN 854 Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 A ++ R AK + GGGGG+P A +GG N + +AGV Sbjct: 855 ASNIVRELAKDI-QGGGGGQPFYATAGGKN----KEGLAGV 890 >gi|296876817|ref|ZP_06900865.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 15912] gi|296432319|gb|EFH18118.1| alanine--tRNA ligase [Streptococcus parasanguinis ATCC 15912] Length = 872 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 342/931 (36%), Positives = 508/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G KP Sbjct: 1 MKQLSSAQVRQMWLDFWASKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIKPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKMSGKTYDPDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGIEGTFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL+ G ++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIIKSEEESFARTLNSGQHFAQTIVEDLKAKGQTVIAGQDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 411 IAEEAGMT-VDRDGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESSFNYNASQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ EAVS ++F +T Sbjct: 469 -----------------------------PSKLVAIVADNAEV--EAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + + +TDVQK G +H V L L ID Sbjct: 498 PFYAEMGGQVADHGQILDAAGNVVATVTDVQKAPNGQPLHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T EL++IE Sbjct: 557 TNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTPEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + + V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEAIAVETIETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GGYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQLKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ +A+ K + NV++ + H+ +++ +S D Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNVQEANGHR-----YIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K ++ T+++ +A ++ + A ++ Sbjct: 787 AGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKTKEV----HAGNVIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG N K + + VA L Sbjct: 842 GRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|217034055|ref|ZP_03439476.1| hypothetical protein HP9810_893g2 [Helicobacter pylori 98-10] gi|216943450|gb|EEC22904.1| hypothetical protein HP9810_893g2 [Helicobacter pylori 98-10] Length = 847 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 317/837 (37%), Positives = 471/837 (56%), Gaps = 64/837 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G+ +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGVR-MDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477 ++EQ R++A G + + ++ Y +F GY+ S F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTECSAKALGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + P Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 473 EANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALLKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 I K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 NEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHVSQ GS + LRFD +H K + EL+ +ED+VN I ++L M Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDSVNAQIFKHLTSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS +++ + LCGG HV +TG I I+ ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRILKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ ++++LK+ LK +V+ + ++ E + Q Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVIAGINKLKESVKNSQ------ 731 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K ++V DL KI VN + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 732 KAPVSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784 >gi|34540951|ref|NP_905430.1| alanyl-tRNA synthetase [Porphyromonas gingivalis W83] gi|41018164|sp|Q7MV54|SYA_PORGI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|34397266|gb|AAQ66329.1| alanyl-tRNA synthetase [Porphyromonas gingivalis W83] Length = 876 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 336/922 (36%), Positives = 502/922 (54%), Gaps = 90/922 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +F FF GH+++PS+ ++ DPTLMFTN+GM FK+I G + Y Sbjct: 1 MLTSKEIRESFKTFFASKGHKIVPSAPMVIKGDPTLMFTNAGMNQFKDIILGNTEAKYTR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+ L L Sbjct: 61 VADSQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLVTVLGL 120 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D +RLY TV+ D D EA W + L ++II +DNFW M +TGPCGPC Sbjct: 121 DPQRLYATVFEGNPEEGLDRDNEAASYWAQF--LPEERIINGNKHDNFWEMGDTGPCGPC 178 Query: 173 SEIFF----DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 SEI D+ GL ++ + IEIWNLVFMQ+ ++ LP IDTGM Sbjct: 179 SEIHIDLRSDEERAQINGLELINKSHPQVIEIWNLVFMQYNRKADASLTPLPHKVIDTGM 238 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 G ER+ LQ KT+NYD D+F+ LI+ +TG+ Y + + + RV+ DH+R+ +F I Sbjct: 239 GFERLCMALQGKTSNYDTDVFQPLIRTLATMTGIGYGEDSTSDIAMRVVADHIRTIAFAI 298 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYT-----EPLMMHLLPALCTEMGSAYPELI 341 DG LP+N GYV+RRI+RRA+ Y GYT E M LLP L MG AYPEL Sbjct: 299 TDGQLPSNAKAGYVIRRILRRAVRY----GYTFLHCREAFMYRLLPTLIDTMGDAYPELQ 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS--HLGKDEILNGDVAFKLYDTHGLPLD 399 + LI ++ E+E F +TL+ G+ LL+ ++ +L+G AF+LYDT G PLD Sbjct: 355 AQRELISRVIKEEEESFLRTLETGIRLLEKKIADNKATGSTVLDGVAAFELYDTFGFPLD 414 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + IL G+ +D F+ +++Q+ RAR ++ + +G W L+E G ++F G Sbjct: 415 LTALILSENGMT-VDESGFDTEMQKQKERAR-NAAAVEAGD----WVVLRE--GESKFSG 466 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD F + + ++L + + Q+ + + +VV TP Sbjct: 467 YD------FTETETEILR--------------YRQVKQKNK--------EYFQVVLSDTP 498 Query: 520 FYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 FYAE GGQ+GD+G I + G+ I D K+ + VH ++++ T + V I+ Sbjct: 499 FYAEMGGQVGDSGQLIDESGVAYDIFDT-KRENNLSVH--LMKKLPESTTDTFVARINQD 555 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 RRQ NH+ATHLLH AL +LG+HV Q GS ++P+ LRFD +H ++ E++ +E+ Sbjct: 556 KRRQAEANHTATHLLHEALREVLGTHVEQKGSFVSPEVLRFDFSHFGKMSPEEIRKVEEL 615 Query: 639 VNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 V++ I + R + +A A GA AL G KY + VRV+ S LCGGT Sbjct: 616 VSERIRADFQREEFRDVPIAEAQAMGAMALFGEKYGEEVRVLKYG------SSVELCGGT 669 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 H+ STG I IV+ESSI +G+RRIEA+TG A + +++ L ++ + N++ Sbjct: 670 HIPSTGMIGAFRIVTESSIASGVRRIEAVTGIGAERFIYEKEDILLAVKELFN-NNPNLI 728 Query: 758 GRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVN------FMSHIISEVDSKEL 809 ++++ EE L Q+ K + L + + DV F+ I E ++ Sbjct: 729 KSIKKMLEEDASLKKQIADMKHERMLKFKKSLLEQ--DVRRRGIRLFLFQEIMEAETA-- 784 Query: 810 KSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLD-RFNAVDLARLSAKVLGGGG 867 K + + ++Q +++ G ++ +K ++ +++++DL + +A L R +AK + GG Sbjct: 785 KDIAFQIAGELQESFVLIAGTTEGGEKCALTVMLSKDLTEGGMDAAKLVRSAAKHI-QGG 843 Query: 868 GGGRPHMAQSGGPNGNKADQAI 889 GGG+PH A +GG N AI Sbjct: 844 GGGQPHFATAGGKNPKGLPAAI 865 >gi|315587131|gb|ADU41512.1| alanine--tRNA ligase [Helicobacter pylori 35A] Length = 847 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 319/838 (38%), Positives = 474/838 (56%), Gaps = 66/838 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + S L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFHNKGHAIYSSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477 ++EQ R++A G + + ++ Y +F GY+ S F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTECSAKALGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + P Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 473 EANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALLKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVE-RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 I K G+ + +++E + +L+ ++ + R +++ +HSATHLL A Sbjct: 507 NEEAAIVLDTKNFFGL--NFSLLEIKKVLKKGDQVIAQVS-DERLEIAKHHSATHLLQSA 563 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L +LGSHVSQ GS + LRFD +H K + EL+ +ED VN I ++L M Sbjct: 564 LREVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNTQIFKHLNSQVEHMPL 623 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A GA AL KY + VRVVS +++ + LCGG HV +TG I IV ES + Sbjct: 624 NQAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGV 678 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 +G+RRIEA+ G+ ++++LK+ + LK +V+ + ++ E + Q Sbjct: 679 SSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----- 731 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K ++V DL KI VN + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 732 -KAPISV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784 >gi|327473314|gb|EGF18734.1| alanine--tRNA ligase [Streptococcus sanguinis SK408] Length = 872 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 345/931 (37%), Positives = 510/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ K Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKKDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + AIV VE SG ++F +TP Sbjct: 459 ------SVFNYEKEELTAE-------------LLAIVADDAAVESVESGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G I DG + Q+TDVQK G +H V L S L ID Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LDPLALGQSYKLEID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI + IV E I +G RRI A+T + A + ++E LK++A+ LK Q Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKE 731 Query: 756 VVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ A ++ NV++ + H +F++ +S D Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K + T+D+ +A +L + A ++ Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +A VA L Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|317180966|dbj|BAJ58752.1| alanyl-tRNA synthetase [Helicobacter pylori F32] Length = 847 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 319/833 (38%), Positives = 467/833 (56%), Gaps = 56/833 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL FF GH + PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLHFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVVFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFETC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++EQ R++A G + + ++ Y +F GY+ C K Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTE-----------CCAKAL 461 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + I EA Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 462 GFFDSDFKEIT-----------EANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDNEEA 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 I K G+ +++ + + + + D R +++ +HSATHLL AL +L Sbjct: 511 AIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HVSQ GS + LRFD +H K + EL+ +ED VN I ++LP M A Sbjct: 569 GPHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNVQIFKHLPSQVEHMPLNQAKD 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL KY + VRVVS +++ + LCGG HV +TG I IV ES + +G+R Sbjct: 629 KGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVSSGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ G+ ++++LK+ LK +V+ + ++ E + Q K + Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVMAGINKLKESVKNSQ------KAPI 735 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +V DL KI VN + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 736 SV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784 >gi|254557076|ref|YP_003063493.1| alanine-tRNA ligase [Lactobacillus plantarum JDM1] gi|254046003|gb|ACT62796.1| alanine-tRNA ligase [Lactobacillus plantarum JDM1] Length = 880 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 336/900 (37%), Positives = 506/900 (56%), Gaps = 71/900 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH ++PS+SL+P +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPNNPRMTSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVGRT RHHT FEMLGNFS G YFK+ AI AW+LLT K F D Sbjct: 67 QKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPKWFGWDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D +A K W+ +G+ D II++ DNFW + + GP GP SEIF+D+GE Sbjct: 123 DKLYMTVYPKDTDAAKFWEA-TGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIFYDRGEA 178 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+E+WN+VF QF + LP+ +IDTGMGLER+ + Sbjct: 179 FNNLADDDPENYPGG--ENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLERVVS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292 V Q N++ DLF +I +E+++ K+ G+N V+ +VI DH R+ +F I+DG LP Sbjct: 237 VFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISDGALP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYV+RR++RRA+ + + LG E + L+P + M S YP++++ IE+ + Sbjct: 297 SNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIEKIVA 356 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE+ RF +TL+ GL LL+ +++ + + L G AFKLYDT+G P ++ ++ L Sbjct: 357 SEESRFNETLNDGLNLLNNLIAETKQAGHDTLAGKDAFKLYDTYGFPFELTKEYAGDEDL 416 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F ++ QR RAR A S G + +K ++++GYD Sbjct: 417 -DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSLLIDIKT---PSEYVGYD-------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LTN V + I+ +V+ SGQ E++F +TPFYAE GGQ+ Sbjct: 465 -------------ELTN-VQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGGQVA 509 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + D + ++TDVQ +H V + +R + + L +D ++ NH Sbjct: 510 DRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKP-MRKDATYTLNVDLAFHNKVEKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +LG H Q GS + PD LRFD TH +T EL +E VND I L Sbjct: 569 TATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWAAL 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV ++E GA A+ KY VRVVS+ G +S GGTHV ++ E+ L Sbjct: 629 PVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSELGL 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSE+ I AG RRIEA+T + A L G+++ LK +A+ +K + + +V ++ + Sbjct: 684 FKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQAD 743 Query: 767 YRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQ 821 + Q A + +L + ++ DVN + I +++ +L+ + D + K Sbjct: 744 LKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTKQY 803 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGG 879 S +++L + E K ++L+ V++D + A DL + ++ KV GGGGGRP +AQ+GG Sbjct: 804 SDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVG--GGGGGRPTLAQAGG 860 >gi|297562016|ref|YP_003680990.1| alanyl-tRNA synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846464|gb|ADH68484.1| alanyl-tRNA synthetase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 888 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 346/919 (37%), Positives = 504/919 (54%), Gaps = 68/919 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I FL FF+KNGH ++PS+SLI DPTL+ +GMVPFK F GQ P + T Sbjct: 2 ETAEIARRFLSFFEKNGHTVVPSASLI-AEDPTLLLVPAGMVPFKPYFLGQRTPPHDTAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKC+R D++ VG+T+RH TFF+MLGNFSFG YFKERAI LAW+L+T Sbjct: 61 SVQKCIRT----KDIEEVGKTSRHATFFQMLGNFSFGDYFKERAIPLAWELVTTPVEEGG 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F +D RL++TVY +D+EA +W+ G+ ++I R+ +N+W M GPCGPCSEIF+ Sbjct: 117 FGIDPERLWVTVYLDDDEAEAIWRDKVGVRPERIQRMGKEENYWDMGVPGPCGPCSEIFY 176 Query: 178 DQGECIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERFIL---PKMSIDTGMGLE 231 D+G G+ G E E RYIEIWNLVFMQ+E + + +E IL PK +IDTG+GLE Sbjct: 177 DRGPEY--GVDGGPEADEDRYIEIWNLVFMQYERGEGSGKEYPILGELPKKNIDTGLGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289 R+A VLQ N Y+ D+ ++ + ++TG +Y N V RV+ DH+RS+ L+ DG Sbjct: 235 RLAAVLQGVDNIYETDIIGRVLHRAAELTGTRYGDNQEQDVMLRVVADHVRSAVMLVGDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIE 348 + P NE GYVLRRI+RR++ RLL TE +H L + + M YP+L+ +I Sbjct: 295 VRPGNEKAGYVLRRILRRSIRNLRLLSGTETAFLHELTEVSIDAMKDIYPDLLDRADVIH 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+ F +TL G L + G + +G AF+L+DT+G P+D+ ++ Sbjct: 355 GVIDTEERNFAETLRAGTALFGRAAERTRAGGGTVFSGTDAFQLHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D SF + ++ Q+ A+A + G + ++ + E G T F+GY Sbjct: 415 EQGLS-VDESSFRELMQRQKDTAKADARSKKLGNADISLYARMLEGAGETDFLGY----- 468 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ++ E R VK IV G A +G KVE+V D TPFYAE+G Sbjct: 469 TESESESR------------------VKGIVVDGVSAPAARAGDKVEIVLDSTPFYAESG 510 Query: 526 GQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL DTG DG + + DVQK G+FVH V G + + ++ ID R + Sbjct: 511 GQLADTGTLTVDGRGVVDVEDVQKPLPGLFVHRGTVRSGEVVLDDTVHAGIDTGRRHAIE 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 +HSATHL+H AL LG Q GS P LRFD T + L +E+ VN ++A Sbjct: 571 RSHSATHLIHSALRNALGPSAGQAGSENRPGQLRFDFTADSALGGERLAEVEEEVNTVLA 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++PV T + ++A+ +GA A+ G KY DRVRV VE D +S LCGGTHV ST Sbjct: 631 GDIPVQTEEKSLDEALKTGAMAMFGEKYGDRVRV--VEMSD---YSVELCGGTHVPSTAR 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRA------RSHLMGQ-DEKLKSLASFLKVSQGNVV 757 + ++ ++ ESSI +G+RR+EA G A S L+GQ E+LK+ L ++V Sbjct: 686 LGIVKLLGESSIGSGVRRVEAAVGVDAFRRLSKESTLVGQLSEQLKTPREELPERIDSMV 745 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 R+ E KL+ + E H A V K V+D Sbjct: 746 SRLRAAEREIEKLRAAQVLQAAGSIAEGARRHGAALVVAAPAPEGASGDDLRKLVLDVRG 805 Query: 818 K--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPH 873 + + + ++ + + K++ V+++ T + A +L ++A+ L GGGGGG+P Sbjct: 806 RLGEDEPAVVAMTAVPKDR--PVVVIATNKAAQKAGIKAGELVGIAARAL-GGGGGGKPD 862 Query: 874 MAQSGGPNGNKADQAIAGV 892 +AQ GG + K D+A+ V Sbjct: 863 IAQGGGSDATKVDEALRAV 881 >gi|300173639|ref|YP_003772805.1| alanyl-tRNa synthetase [Leuconostoc gasicomitatum LMG 18811] gi|299888018|emb|CBL91986.1| alanyl-tRNA synthetase [Leuconostoc gasicomitatum LMG 18811] Length = 893 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 360/945 (38%), Positives = 521/945 (55%), Gaps = 106/945 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S IR FL+FF GHE++PS +LIP +DPTL++ NSG+ K F G P +T Sbjct: 5 NSSQIRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSAVPENPRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDL 120 QK +R ND++NVG+T RHHT FEM+GNFS G YFKE I AW+LLT K + L Sbjct: 65 NAQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEEGIPWAWELLTSPKWYGL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ LY+TVY +D EA K+W++ + + I + DNFW + E GP GP SEIFFD+G Sbjct: 121 DKELLYVTVYPKDTEAKKIWQEKTDIPEGHIYEV--EDNFWDIGE-GPSGPDSEIFFDRG 177 Query: 181 -----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSID 225 E PGG E ERY+EIWN+VF QF + + LP +ID Sbjct: 178 KDFQDLPDNDPEMYPGG------ENERYLEIWNIVFSQFNHLPGLTDNAQYPELPHKNID 231 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNIVNH------RVIVDH 278 TGMGLER+ +V Q+ N+D DLF +I+A+E ++ G KY+ ++VN +VI DH Sbjct: 232 TGMGLERVVSVFQKGRTNFDTDLFLPIIKATEALSDGFKYD--SLVNSESNTSFKVIADH 289 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 +R+ +F I DG LP+NEGRGYV+RR++RRA+ + + LG T + L+P + M S YP Sbjct: 290 IRAVTFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGITGEFLTQLVPVVGDIMQSYYP 349 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHG 395 E+++ I++ + +E++RF TL GL LL+ V++ GK + L+G AFKL DT+G Sbjct: 350 EILENTPKIQKIIAAEEKRFNATLTGGLALLNQVINQAKAEGKTQ-LSGIDAFKLSDTYG 408 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGA 454 PL++ Q+ L +DI FN AL+ QR+RARA S G + LK A Sbjct: 409 FPLELTQEQAAEADLT-VDIQGFNDALQAQRTRARAARANDKSMGIQNAVLTDLKV---A 464 Query: 455 TQFIGYDL--LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 +Q++G+ + + +K M ++ Q GV +++ + AV GQK++ Sbjct: 465 SQYVGWSVTAVDNAKIM----AIIGQD-----DQGVDALLSS----------AVKGQKLQ 505 Query: 513 VVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 +VFD+TPFYAE GGQ+ D G A G I ++ DVQ G +H V T+ Sbjct: 506 LVFDKTPFYAEMGGQVADYGEVLTATGKVIA-RVIDVQNAPNGQHIHTVDVLCDFKLTD- 563 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ L +D +S NH+ATH+L +L I+G + Q GS + P+ LRFD T+ P++ Sbjct: 564 TVNLQVDMARHIAVSKNHTATHMLDQSLRNIIGGDIHQAGSLVEPEYLRFDFTNEGPVSE 623 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 ++ IE +N IA NLPV + E A GA A+ G KY VRVVS+ G Sbjct: 624 ENIEKIETLMNHEIANNLPVSWLETDIESAKKMGAVAVFGEKYGALVRVVSI-----GDF 678 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 + GGTHV ST E+ L IVSES I AG+RRIEA+TG +A + ++ LK++A+ + Sbjct: 679 NKEFDGGTHVKSTAELGLFKIVSESGIGAGVRRIEAVTGLQAIALYQAEENALKAIATTV 738 Query: 750 KVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808 K + +V +V ++ +L+L +RKL+ ++E + A + + S+V + Sbjct: 739 KAQRLTDVPSKVADM-----QLELKATQRKLE-SLESQLANAAA-----TEVFSDVKTSH 787 Query: 809 LKSVMDA-LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGG 867 S + A LQ G+ + K S ++V+ + R N + A SA G Sbjct: 788 GHSYITAQLQVSGMDGLRQVADNWKMSYPSDVLVLAATVDGRVNLIVTASPSANAAGIKA 847 Query: 868 G--------------GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 G GGRP MAQ+GG N +A A VA+FL K Sbjct: 848 GELIKAIAPRVGGGGGGRPDMAQAGGKNPAGIAEAFADVANFLAK 892 >gi|301794425|emb|CBW36859.1| alanyl-tRNA synthetase [Streptococcus pneumoniae INV104] Length = 872 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 346/926 (37%), Positives = 503/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LL Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLISPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +TL G G+++ L G+ I DV FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGSDV-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 I G+ +D F A++EQ+ RARA S+G+ + T + I Y +Q Sbjct: 411 IAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL- 468 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S +V + E+ AVS ++F +T Sbjct: 469 -----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAET 497 Query: 519 PFYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G + + I +T+VQK G +H V L L ID Sbjct: 498 SFYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 SNRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QQVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q Sbjct: 672 THVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELK 810 V +VE + E+ R+LQ +A K K +VN +I S+V D+ L+ Sbjct: 732 VPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGHRYIASQVSVSDAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG N K + + VA L Sbjct: 847 KPDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|295425855|ref|ZP_06818535.1| alanine--tRNA ligase [Lactobacillus amylolyticus DSM 11664] gi|295064458|gb|EFG55386.1| alanine--tRNA ligase [Lactobacillus amylolyticus DSM 11664] Length = 879 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 343/929 (36%), Positives = 518/929 (55%), Gaps = 92/929 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S R FL+FF+++GH ++PS+SLIP +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SEFRQMFLDFFKEHGHMIMPSASLIPQDDPTLLWINSGVATMKKYFDGSVVPKNHRITSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RH TFFEMLGNFS G YF+ AI AW+ LT K LD+ Sbjct: 67 QKSIRT----NDIENVGKTARHQTFFEMLGNFSVGDYFRNEAITWAWEFLTSPKWLGLDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY TVY +D ++ K+W+K +G+ + I ++ DNFW + E GPCGP +EIF+D+G Sbjct: 123 SKLYCTVYPKDIDSQKVWEK-AGMPKNHIFKL--EDNFWDIGE-GPCGPDTEIFYDRGQE 178 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 E P PG E RY+EIWN+VF Q+ + P +IDTGMGLER+ + Sbjct: 179 NNDVAEDDPENFPGG--ENARYLEIWNIVFSQYNHLPNGKYVDQPHKNIDTGMGLERVLS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILP 292 +LQ N++ DLF +I A+E++T G KY N + ++I DH+R+ SF IADG LP Sbjct: 237 ILQGAPTNFETDLFLPIIHATEEMTPGKKYGVNKADTTAFKIIADHVRAVSFAIADGALP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N GRGYVLRR++RRA + LG + L+P + M S YPE++ + IE ++ Sbjct: 297 SNNGRGYVLRRLIRRADLNGQRLGIKGAFLYKLVPVVGKIMQSHYPEVMDQRGFIENVIQ 356 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ERF TLD GL LLD +++ K ++ ++G AFKL+DT+G P ++ + GL Sbjct: 357 NEEERFQATLDSGLTLLDELIAKAKKSDNKTISGKDAFKLFDTYGFPYELTFESAQDAGL 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F++ ++ Q+ RAR L S G + ++K+K ++F K+ Sbjct: 417 K-IDKKGFDKEMQAQKERARKARGDLQSMGRQDVTLMNIKDK---SEF------EYGKYE 466 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ K++ IV ++V +A G++ +VFD+TPFYAE GGQ+ Sbjct: 467 EDHAKLI-----------------DIVVNDKLVNKA-DGEEAILVFDKTPFYAERGGQVA 508 Query: 530 DTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTE--MSLVLTIDYQNRRQLSI 585 D G DG + ++TDVQ +H + IL E VL ID + R L Sbjct: 509 DHGNIYNQDGELVAKVTDVQHAPNDQNLHFVDI---ILPLEKGQEYVLKIDRERREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATHLLH AL +LG H Q GS + PD LRFD T +P+T E+KS+E+ VN I + Sbjct: 566 SHTATHLLHAALRQVLGEHTHQAGSLVEPDYLRFDFTAMEPMTPREIKSVEELVNQKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + E+ GA AL KY D+VRVV V G SS CGGTH +T +I Sbjct: 626 AIQVKTTVTTPEEGKKMGALALFNGKYGDKVRVVQV-----GDFSSEFCGGTHCDNTNQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIW 764 + I+SES++ AG+RRIEA+T ++A +L + L + +K ++ + ++ +++ Sbjct: 681 GIFKIISESAVGAGMRRIEAVTSKKAYEYLADRSTLLDDIQEHVKATKPDGIMDKID--- 737 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--------------CHKIADVNFMSHIISEVDSKELK 810 L + Q +EDL+ K D+ ++ +L+ Sbjct: 738 ------SLESSLHDAQKQIEDLTKKINQAKAGEIFDNVQKAGDLTVIAATADVSGMNDLR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 + D+ + +S +++L + KA+++I + + LD+ A DL + +A + GGGGG Sbjct: 792 ELADSWKSGNKSDVLVLAA-KNDGKANMIISLNKKALDKGLKAGDLIKKAAPIF-GGGGG 849 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GRP+MAQ+GG D+AI V S + K Sbjct: 850 GRPNMAQAGGKKPEGIDEAIKTVISEISK 878 >gi|149011620|ref|ZP_01832816.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75] gi|147764051|gb|EDK70983.1| alanyl-tRNA synthetase [Streptococcus pneumoniae SP19-BS75] Length = 872 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 342/925 (36%), Positives = 502/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKGHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ D I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEVE---VDPSHLIPIEDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINELFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y A+Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNASQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ EAVS ++F +T Sbjct: 469 ----------------------------SSKLVAIVADNAEV--EAVSEGTASLIFAETS 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + ++ +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADHGQILDESGKVVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 + E + E+ R+LQ +A K K + +VN +I S+V D+ L++ Sbjct: 733 PHKAEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDVKEVNGHRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|302874705|ref|YP_003843338.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B] gi|307690682|ref|ZP_07633128.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B] gi|302577562|gb|ADL51574.1| alanyl-tRNA synthetase [Clostridium cellulovorans 743B] Length = 879 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 317/907 (34%), Positives = 517/907 (57%), Gaps = 52/907 (5%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ +R +L+FF+ H LPS SL+P ND +L+ N+GM P K FTG KP +TT Sbjct: 6 LNELREAYLKFFESKEHLRLPSYSLVPKNDKSLLLINAGMAPLKPYFTGLSKPERNRITT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKCVR G D++NVG T+RH TFFEMLGNFSFG YFK I AW+ +T+ + + Sbjct: 66 CQKCVRTG----DIENVGITSRHATFFEMLGNFSFGDYFKNEVIPWAWEFVTEVLKMPKD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++T+Y ED+EA+++W + + I R+ DNFW GPCGPC+EI F++G + Sbjct: 122 KLFVTIYLEDDEAYEIWTTKTDVDKSHIFRLGKKDNFWEHG-AGPCGPCTEIHFNRGNAV 180 Query: 184 --PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 ++ + ++ IE WNLVF QF+ + L +IDTG GLER+A ++Q K Sbjct: 181 VTTAEEFEAAADEDKIIEFWNLVFTQFDGDGEGNYEKLKSTNIDTGAGLERLAAIMQGKE 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +++D +++ +V G+KY N N ++ R+I DH+RS +FLI+DG++P+NEGRGY Sbjct: 241 SIFEVDTMNNILTEVTKVAGIKYGDNAKNDISIRIITDHVRSVTFLISDGVMPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + + LG E + ++ + + AYPEL + I++ +R E++RF Sbjct: 301 VLRRLLRRAARHGKQLGIKEAFLCNICDVVIRDSKEAYPELDEKADYIKKVIRLEEDRFR 360 Query: 360 KTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 +T+D G+ +L + + ++ + L G+ AFKLYDT+G P+++ Q+IL ID Sbjct: 361 ETIDSGMEILMSYVEEMKQENSDTLAGEKAFKLYDTYGFPIELTQEILEEMNYK-IDKDG 419 Query: 418 FNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F + + +QR RAR A GT K+ ++ + T+F GY + Sbjct: 420 FTKEMNDQRERARSARETSNYMGTDIKVLDTISQDI-KTEFDGYGKTK------------ 466 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 ++S V I++ E V GQK ++ + TPFYAE GGQ+GDTG Sbjct: 467 -----------LTSKVVMIIENDEFVNTIEEGQKGIILAEVTPFYAEMGGQIGDTGEIYN 515 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + + D +K G H+ ++ G L + ++L +D + R ++ NH+ATH+++ A Sbjct: 516 ENFKAIVIDTKKNISGKIAHYVEIKEGKLTLDEEIILQVDEKRRDEIRKNHTATHMINKA 575 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 LS +LGSHV Q GS +T + LRFD +H +T E+ +E VND I + V T M+ Sbjct: 576 LSLVLGSHVHQAGSLVTAERLRFDFSHFTAMTEEEIFKVEKLVNDEIEKLTEVNTEEMSL 635 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 A GA + KY+D VRVV+V G SS LCGG H+ + G+I L+ I SE+ I Sbjct: 636 AVAKEKGAVGIFDDKYSDVVRVVNV-----GDFSSELCGGIHIDNIGKIGLVKITSETGI 690 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY--RKLQLIH 774 AG RRIEA+ G A ++ + + LK ++ LK +V R++ + + ++ ++ Sbjct: 691 AAGTRRIEAVVGANAIQYMEEKAQLLKEASALLKTMPNEIVQRIQLLLSDVKDKEKEIEK 750 Query: 775 AKRKLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 K KL E+ S ++ + ++ + +D+ L+ + D ++ K+ G+++L G Sbjct: 751 LKSKLASGEEENILASVKEVKGIKVAAYALKGIDANGLRELADKVRDKVGDGLVVL-GSV 809 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++K S++ + T++ +++ + ++ ++ + GGGGGGRP MAQ+GG + K ++AI Sbjct: 810 MDEKVSLVAMATKEAVNK--GIHCGKIIKEISAIVGGGGGGRPDMAQAGGKDPAKVEKAI 867 Query: 890 AGVASFL 896 V + + Sbjct: 868 GEVLNIV 874 >gi|313205146|ref|YP_004043803.1| alanyL-tRNA synthetase [Paludibacter propionicigenes WB4] gi|312444462|gb|ADQ80818.1| alanyl-tRNA synthetase [Paludibacter propionicigenes WB4] Length = 869 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 346/912 (37%), Positives = 494/912 (54%), Gaps = 82/912 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +FL+FF GH+++PS+ ++ +DPTLMFTN+GM FKNI G + Y V QK Sbjct: 6 IRQSFLDFFASKGHKIVPSAPMVIKDDPTLMFTNAGMNQFKNIILGNDPIKYSRVADSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+ LT+ LD+ RLY Sbjct: 66 CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEWAWEYLTEVLKLDKDRLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +TV+ + D+EA +W + L +II DNFW M +TGPCGPCSEI D Sbjct: 126 VTVFEGYAPEGLERDDEAAAIWAQF--LPEHRIINGNKKDNFWEMGDTGPCGPCSEIHID 183 Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 GL + + IEIWN VFMQ+ ++ LP IDTGMG ER+ Sbjct: 184 IRDNDERAKIDGLTLVNGSHPQVIEIWNNVFMQYNRKADGSLEGLPAKVIDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292 +Q +NYD D+F +I +V G +Y + V+ RVI DH+R+ +F I DG LP Sbjct: 244 MAMQGVQSNYDTDVFTPIIAEIGRVCGAEYGKDEKVDIAMRVIADHIRTIAFSITDGQLP 303 Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 +N GYV+RRI+RRA+ Y LG M L+ L MG AYPEL+ K LIE+ + Sbjct: 304 SNAKAGYVIRRILRRAVRYGYTFLGQRHAFMYKLITVLSENMGKAYPELLSQKTLIEKVI 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 + E+E F +TL+ G+ LLD V++ K EI G VAF LYDT G PLD+ + IL Sbjct: 364 KEEEESFLRTLETGIKLLDKVMADSKAAAKTEI-EGKVAFTLYDTFGFPLDLTELILREN 422 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ++I FN +++Q+ RAR + T W +++E G ++F+GYD F Sbjct: 423 NFT-VNIDEFNSEMQKQKERARN-----AAATETGDWVTVRE--GDSEFVGYD------F 468 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + D ++L + + Q+ + + ++V +TPFYAE GGQ+ Sbjct: 469 NEADTEILR--------------YRKVKQKNQ--------EYYQIVLSKTPFYAEMGGQV 506 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GD G D + I D KK + VH I + + TID + R+ NHS Sbjct: 507 GDCGTLKSDHGSIDIIDT-KKENNLAVH--IANKLPEDVTETFTATIDIEKRKATECNHS 563 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG+HV Q GS ++PD LRFD +H + +T E++++E N I +N P Sbjct: 564 ATHLLHEALREVLGTHVEQKGSFVSPDALRFDFSHFQKLTKEEIRAVEAIANRKIRENYP 623 Query: 649 VVTRIMNREDAIAS----GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + R RE IA GA AL G KY + VRV+ S LCGGTHVS+TG Sbjct: 624 LQER---RETPIAEAQAMGAMALFGEKYGETVRVIQFG------SSVELCGGTHVSATGN 674 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L+ +V+ESSI AGIRRIEAITG+ L Q E + L + +V+ + + Sbjct: 675 IGLVRVVAESSIAAGIRRIEAITGKAVEELLDKQQETIGEAKELLN-NAPDVISAIRRLS 733 Query: 765 EEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE L+ +H K + L + L+ I + + + + K++ ++ Sbjct: 734 EESADLKKQVEAFVHEK-IMSLRDKLLAEATIVKGFKVIQYEGSLTADQTKTLAFQIRNV 792 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + G + K S+ +++++DL+ NA ++AR +AK + GGGGG+P A +G Sbjct: 793 QAEKLFFVAGCVADGKPSLTVLLSDDLVAGGLNATNIAREAAKEI-QGGGGGQPFFASAG 851 Query: 879 GPNGNKADQAIA 890 G N +AIA Sbjct: 852 GKNLAGIQKAIA 863 >gi|300768023|ref|ZP_07077929.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181070|ref|YP_003925198.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ST-III] gi|300494372|gb|EFK29534.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046561|gb|ADN99104.1| alanine--tRNA ligase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 880 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 336/900 (37%), Positives = 506/900 (56%), Gaps = 71/900 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH ++PS+SL+P +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPDNPRMTSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVGRT RHHT FEMLGNFS G YFK+ AI AW+LLT K F D Sbjct: 67 QKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPKWFGWDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D +A K W+ +G+ D II++ DNFW + + GP GP SEIF+D+GE Sbjct: 123 DKLYMTVYPKDTDAAKFWEA-TGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIFYDRGEA 178 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+E+WN+VF QF + LP+ +IDTGMGLER+ + Sbjct: 179 FNNLADDDPENYPGG--ENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLERVVS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292 V Q N++ DLF +I +E+++ K+ G+N V+ +VI DH R+ +F I+DG LP Sbjct: 237 VFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISDGALP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYV+RR++RRA+ + + LG E + L+P + M S YP++++ IE+ + Sbjct: 297 SNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIEKIVA 356 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE+ RF +TL+ GL LL+ +++ + + L G AFKLYDT+G P ++ ++ L Sbjct: 357 SEESRFNETLNDGLNLLNNLIAETKQAGHDTLAGKDAFKLYDTYGFPFELTKEYAGDEDL 416 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F ++ QR RAR A S G + +K ++++GYD Sbjct: 417 -DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSLLIDIKT---PSEYVGYD-------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LTN V + I+ +V+ SGQ E++F +TPFYAE GGQ+ Sbjct: 465 -------------ELTN-VQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGGQVA 509 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + D + ++TDVQ +H V + +R + + L +D ++ NH Sbjct: 510 DRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKP-MRKDATYTLNVDLAFHNKVEKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +LG H Q GS + PD LRFD TH +T EL +E VND I L Sbjct: 569 TATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWAAL 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV ++E GA A+ KY VRVVS+ G +S GGTHV ++ E+ L Sbjct: 629 PVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSELGL 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSE+ I AG RRIEA+T + A L G+++ LK +A+ +K + + +V ++ + Sbjct: 684 FKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQAD 743 Query: 767 YRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQ 821 + Q A + +L + ++ DVN + I +++ +L+ + D + K Sbjct: 744 LKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTKQY 803 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGG 879 S +++L + E K ++L+ V++D + A DL + ++ KV GGGGGRP +AQ+GG Sbjct: 804 SDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVG--GGGGGRPTLAQAGG 860 >gi|327458679|gb|EGF05027.1| alanine--tRNA ligase [Streptococcus sanguinis SK1057] Length = 872 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 344/931 (36%), Positives = 514/931 (55%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ K Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKKDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + +++G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAQGIVADLKEKGQTVISGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + AIV VE +G ++F +TP Sbjct: 459 ------STFNYEKEELTAE-------------LLAIVADDASVESVETGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G I DG + Q+TDVQK G +H V I + S L ID Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEVLAPIALGQ-SYKLEID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI + IV E I +G RRI A+T + A ++E LK++A+ LK Q Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + ++ R+LQ +A+ K + NV++ + H +F++ +S D Sbjct: 732 VPHKVEALQDQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K + T+++ +A +L + A ++ Sbjct: 787 AGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKEV----HAGNLIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +A VA L Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|261838564|gb|ACX98330.1| alanyl-tRNA synthetase [Helicobacter pylori 51] Length = 847 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 316/837 (37%), Positives = 468/837 (55%), Gaps = 64/837 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK++FTG +P T+ Q Sbjct: 3 IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDVFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYRVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477 ++EQ R++A G + + ++ Y F+GY+ L + F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNAFVGYETTECLAKALGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + P Q+ V+ ++TPFYAE GG +GD G D Sbjct: 473 KANP--------------------------NQEAWVLLEKTPFYAEGGGAIGDRGTLFKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + I K G+ +++ + + + + D R +++ +HSATHLL L Sbjct: 507 NEEVAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSTL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHVSQ GS + LRFD +H K + EL+ +ED VN I ++L M Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS +++ + LCGG HV +TG I IV ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ + ++LK+ LK +V+ + ++ E + Q Sbjct: 680 SGVRRIEAVCGKAFYQLAKEESKELKNAKIALK--NNDVIAGINKLKESVKNSQ------ 731 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K ++V DL KI VN + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 732 KAPVSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHEKLLAMVFKKENER 784 >gi|28378871|ref|NP_785763.1| alanine--tRNA ligase [Lactobacillus plantarum WCFS1] gi|38258328|sp|Q88V10|SYA_LACPL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28271708|emb|CAD64614.1| alanine--tRNA ligase [Lactobacillus plantarum WCFS1] Length = 880 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 336/900 (37%), Positives = 506/900 (56%), Gaps = 71/900 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF + GH ++PS+SL+P +DPTL++ NSG+ K F G P +T+ Sbjct: 7 SEIRQMYLDFFHEKGHTIVPSASLVPVDDPTLLWINSGVATMKKYFDGSVVPDNPRMTSS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVGRT RHHT FEMLGNFS G YFK+ AI AW+LLT K F D Sbjct: 67 QKSIRT----NDIENVGRTARHHTLFEMLGNFSVGDYFKKEAISWAWELLTSPKWFGWDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+TVY +D +A K W+ +G+ D II++ DNFW + + GP GP SEIF+D+GE Sbjct: 123 DKLYMTVYPKDTDAAKFWEA-TGVKPDHIIKV--EDNFWDIGQ-GPSGPDSEIFYDRGEA 178 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 P PG E ERY+E+WN+VF QF + LP+ +IDTGMGLER+ + Sbjct: 179 FNNLADDDPENYPGG--ENERYLEVWNIVFSQFNHTPEGTYEPLPRKNIDTGMGLERVVS 236 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILP 292 V Q N++ DLF +I +E+++ K+ G+N V+ +VI DH R+ +F I+DG LP Sbjct: 237 VFQNAKTNFETDLFLPIIHKTEELSDGKHYGDNAQDDVSFKVIADHARAITFAISDGALP 296 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYV+RR++RRA+ + + LG E + L+P + M S YP++++ IE+ + Sbjct: 297 SNEGRGYVIRRLIRRAILHGQKLGLKEAFLDQLVPIVGKIMASHYPDVLKNSAYIEKIVA 356 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 SE+ RF +TL+ GL LL+ +++ + + L G AFKLYDT+G P ++ ++ L Sbjct: 357 SEESRFNETLNDGLNLLNNLIAETKQTGHDTLAGKDAFKLYDTYGFPFELTKEYAGDEDL 416 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F ++ QR RAR A S G + +K ++++GYD Sbjct: 417 -DVDEAGFEVEMKAQRDRARNARSSAKSMGVQRSLLIDIKT---PSEYVGYD-------- 464 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LTN V + I+ +V+ SGQ E++F +TPFYAE GGQ+ Sbjct: 465 -------------ELTN-VQGTLNDIIVDETLVDHVDSGQ-AEMIFSKTPFYAEMGGQVA 509 Query: 530 DTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + D + ++TDVQ +H V + +R + + L +D ++ NH Sbjct: 510 DRGVILDDAGEMVAKVTDVQNAPNKQHLHTVEVLKP-MRKDATYTLNVDLAFHNKVEKNH 568 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +LG H Q GS + PD LRFD TH +T EL +E VND I L Sbjct: 569 TATHLLDQALRDVLGEHTKQAGSLVEPDYLRFDFTHFGQVTDEELAKVEQIVNDKIWAAL 628 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV ++E GA A+ KY VRVVS+ G +S GGTHV ++ E+ L Sbjct: 629 PVSAIQTDQETGHKMGAIAVFTEKYGKIVRVVSI-----GDYSIEFDGGTHVKNSSELGL 683 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IVSE+ I AG RRIEA+T + A L G+++ LK +A+ +K + + +V ++ + Sbjct: 684 FKIVSETGIGAGTRRIEAVTSKEAFELLAGEEQTLKQVAAQVKAPKLADTPAKVSQLQAD 743 Query: 767 YRKLQLIHAKRKLQLNVEDLSC--HKIADVNFMSHIISEVDSK---ELKSVMDALQKKIQ 821 + Q A + +L + ++ DVN + I +++ +L+ + D + K Sbjct: 744 LKAEQQNRASLESRLAKQQAGAVFDQVDDVNGTTLIAQQIEVSGMDQLRQLADTWKTKQY 803 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGG 879 S +++L + E K ++L+ V++D + A DL + ++ KV GGGGGRP +AQ+GG Sbjct: 804 SDVLVLGTVIGE-KVNLLVAVSDDKVKAGIKAGDLIKAIAPKVG--GGGGGRPTLAQAGG 860 >gi|308064021|gb|ADO05908.1| alanyl-tRNA synthetase [Helicobacter pylori Sat464] Length = 847 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 317/833 (38%), Positives = 469/833 (56%), Gaps = 56/833 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLERKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++EQ R++A G + + ++ Y F+GY+ C K Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTE-----------CCAKAL 461 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + I EA Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 462 GFFDSDFKEIT-----------EANPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEA 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 I K G+ +++ + + + + D R +++ +HSATHLL AL +L Sbjct: 511 AIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 G HVSQ GS + LRFD +H K + EL+ +ED+VN I ++L + M A Sbjct: 569 GPHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDSVNAQIFKHLNSQVQHMPLNQAKD 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL KY + VRVVS +++ + LCGG HV +TG I IV ES + +G+R Sbjct: 629 KGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVSSGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ G+ ++++LK+ LK +V+ + ++ E + Q K + + Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVIAGINKLKESVKNSQ----KAPVSM 737 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 DL KI VN + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 738 ---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKNKHERLLAMVFKKENER 784 >gi|300725879|ref|ZP_07059342.1| alanine--tRNA ligase [Prevotella bryantii B14] gi|299776816|gb|EFI73363.1| alanine--tRNA ligase [Prevotella bryantii B14] Length = 888 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 325/922 (35%), Positives = 501/922 (54%), Gaps = 92/922 (9%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR ++L++F+ GH ++PS+ ++ +DPTLMFTN+GM +K+I G ++P + Sbjct: 1 MMTANEIRDSYLKYFESKGHVIVPSAPIVVKDDPTLMFTNAGMNQWKDIILGTKEPEPRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTN--RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+R GKHNDL+ VGR + HHT FEMLGN+SFG YFKE AI +A++ L Sbjct: 61 RADTQKCLRVSGKHNDLEEVGRDSALSHHTMFEMLGNWSFGDYFKEGAIDMAYEYLVDVL 120 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD + LY+TV++ DE EA K W+K + I+ +DNFW M + GPCG Sbjct: 121 KLDPKDLYVTVFEGDEAENLERDDEAAKFWEK--HFPKNHIVNGNKHDNFWEMGDQGPCG 178 Query: 171 PCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PC+EI D + E +PG +++ + IEIWN VFMQ+ ++ L IDT Sbjct: 179 PCTEIHIDFRSEEEKAKVPGEELVNKDHPKVIEIWNNVFMQYNRKADGTLEPLKMQVIDT 238 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNN----------IVN 271 GMG ER+ ++Q K +NYD D+F +I E+++G KY EG+N + Sbjct: 239 GMGFERLVRLMQGKNSNYDTDIFTPIIDEIERISGKKYNHTFPEGDNGEGINEEQKVDIA 298 Query: 272 HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM-CYARLLGYTEPLMMHLLPALC 330 RV+ DHLR+ +F IADG LP+N GYV+RRI+RRA+ Y L E M LLP L Sbjct: 299 IRVVADHLRAVAFAIADGQLPSNAKAGYVIRRILRRAVRYYYTFLDQKEAFMFKLLPTLV 358 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVA 387 EMG AYPEL + LI ++ E++ F +TL++G+ LL+G + L GK E L+G A Sbjct: 359 AEMGGAYPELKAQQELIGRVMKEEEDSFLRTLEKGINLLNGDMETLKANGKTE-LDGASA 417 Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447 F+L+DT+G PLD+ + ++C +D FN+ + +Q++RAR ++ + +G W Sbjct: 418 FRLFDTYGFPLDLTE-LICTENGYTVDEKGFNEEMAKQKARAR-NAAAVENGD----WQV 471 Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507 +KE G +F+GYD + R+V +K Sbjct: 472 IKE--GEQEFVGYDYSEYPCHILRYRQVTQKKNTF------------------------- 504 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 E+V D TPFY E GGQ+GD G + + + +TD K+ +H IV++ Sbjct: 505 ---YELVLDHTPFYGEMGGQVGDCGTLVSENETVTVTDT-KRENNQSIH--IVKKLPEDL 558 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + +D R + NH+ATHLL +AL +LG HV Q GS + LRFD +H + + Sbjct: 559 NAEFMACVDLDKRNGSAANHTATHLLDYALKQVLGDHVEQKGSYVDDKVLRFDFSHFQKV 618 Query: 628 TSAELKSIEDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 T E++ +E VN +I Q+LP+ R E+A GA AL G KY D+VRVV Sbjct: 619 TDEEIRQVERIVNAMIRQDLPLDEHRDTPIEEAKELGAIALFGEKYGDKVRVVRFG---- 674 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 S+ CGG H STG I I+SESS+ AG+RRIEA+TG+ L + L + Sbjct: 675 --PSAEFCGGIHAQSTGRIGFFKIISESSVAAGVRRIEALTGKACEETLYTLQDTLSDVK 732 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHII 801 S ++ ++ +++ +E+ ++ K + Q+ DL +I V + ++ Sbjct: 733 SLFNNAK-DLHAVIQKYIDEHDAMKKEVEKFQAQMVERTKNDLVSKAQEINGVKVVKAVL 791 Query: 802 SEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLS 859 ++ K ++ +++ I ++ ++G + K + ++ ++D++ NA + R + Sbjct: 792 P-LEPNAAKDLVFKIREAIPENLVAVIGSTSNDKPMLSVMFSDDMVKNHDLNAGKMIREA 850 Query: 860 AKVLGGGGGGGRPHMAQSGGPN 881 AK++ GGGGG+PH AQ+GG + Sbjct: 851 AKLI-KGGGGGQPHYAQAGGKD 871 >gi|258653460|ref|YP_003202616.1| alanyl-tRNA synthetase [Nakamurella multipartita DSM 44233] gi|258556685|gb|ACV79627.1| alanyl-tRNA synthetase [Nakamurella multipartita DSM 44233] Length = 891 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 332/911 (36%), Positives = 497/911 (54%), Gaps = 65/911 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F++ GH ++PS+SLI D T++FT +GM PFK F GQ P + T+VQK Sbjct: 6 IRRRFLDHFERAGHTVVPSASLI-SQDATVLFTIAGMAPFKPYFLGQSTPPFPRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR G D+DNVG T RH+TFF+M GNFSFG YFK AI+ AW LLT + LD Sbjct: 65 CVRTG----DIDNVGVTTRHNTFFQMAGNFSFGDYFKAGAIEHAWTLLTSSLADGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY+ D+EA +LW++I+GL A++I R DNFWSM GPCGPCSEI++D+G Sbjct: 121 PDRLWVTVYESDDEAERLWQEIAGLPAERIQRRGMADNFWSMGVPGPCGPCSEIYYDRGP 180 Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQ-----FEQQNKQERFIL---PKMSIDTGMGLE 231 I GG P + E+ RY+E+WNLVFMQ + K + IL P+ +IDTG+G+E Sbjct: 181 EYGIEGG-PVADED--RYLEVWNLVFMQDMRGESDGSGKGDFPILGPLPQQNIDTGLGVE 237 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIAD 288 R+A +LQ N Y+ DL + +I + EQ++G KY G + V RVI DH RS LI D Sbjct: 238 RLAFLLQGVDNVYETDLLRPIIASMEQLSGKKYGGGDHQADVRFRVIADHSRSGMMLIGD 297 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRR++RRA+ ARLLG TEP+M L+ + M +YPEL IE Sbjct: 298 GVTPGNEGRGYVLRRLLRRAVRSARLLGVTEPVMPTLMSIVRDLMSPSYPELATDYERIE 357 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILC 406 + +E++ F +T+ G L D + L + L G AF L+DT G P+D+ ++ Sbjct: 358 KVAATEEKAFLRTIASGSKLFDVAAADLATQHVTTLPGATAFTLHDTQGFPIDLTLEMAA 417 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 GL +D+ F + ++EQ+ RARA + G + + GAT+F GY S Sbjct: 418 EAGLT-VDVAGFERLMKEQKDRARADAKARKGGFADLSEYRRLLDQGATEFTGY-----S 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + E R ++ +++ G V A G+++E+V D+TP YAE+GG Sbjct: 472 ELQTEAR------------------IRGLLRDGVPVPAAHEGEEIELVLDRTPLYAESGG 513 Query: 527 QLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 Q D G +G ++ DVQK + VH + G T ++ +D + R Sbjct: 514 QDSDAGTIVGAHGAAEVLDVQKVDRKLVVHRVRITDGEFTTGAQVLAKVDPEWRLGARQA 573 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HS TH++H AL +LG Q+GS P LR D + +++A +E+ N + Q+ Sbjct: 574 HSGTHVVHAALRQVLGPEALQSGSYNKPGYLRLDFAWDQALSAATRSELEEVANRAVRQD 633 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 LPV + ++A A GA AL G Y+D VR+V + GG S LCGGTHV + +I Sbjct: 634 LPVRVLYGSMQEAQAMGAIALFGETYDDTVRIVEI----GGPWSVELCGGTHVEHSSQIG 689 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + I +ESS+ +G+RR+EA G A L+ + + LAS LKV + GR+E + ++ Sbjct: 690 PVAITAESSVGSGLRRVEAAVGIEAFHRLVAERTLVSQLASTLKVQPAELPGRIETLLDK 749 Query: 767 YRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQKKI 820 + +L + NV DV ++ + + + +L+++ ++ ++ Sbjct: 750 LKSAEKELAGLRAAALGNVAGTLAGGAIDVAGVALVAATAPEGTAAGDLRTLASDVRGRL 809 Query: 821 --QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + G++ L + + V + A +LA+ ++ G GGG+ +AQ Sbjct: 810 GDRPGVVALFAPAHASVPFAVAVNQGGIARGLAAGELAKAVLPLI-EGRGGGKKDLAQGA 868 Query: 879 GPNGNKADQAI 889 G ++ +AI Sbjct: 869 GTRPDRIPEAI 879 >gi|327461590|gb|EGF07921.1| alanine--tRNA ligase [Streptococcus sanguinis SK1] gi|327489449|gb|EGF21242.1| alanine--tRNA ligase [Streptococcus sanguinis SK1058] Length = 872 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 345/931 (37%), Positives = 512/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWASKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + AIV VE SG ++F +TP Sbjct: 459 ------SVFNYEKEELTAE-------------LLAIVADDAAVESVESGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G I DG + Q+TDVQK G +H V L S L ID Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LDPLALGQSYKLEID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI + IV E I +G RRI A+T + A + ++E LK++A+ LK Q Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ +A+ K + NV++ + H +F++ +S D Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K + T+D+ +A +L + A ++ Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +A VA L Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|225010000|ref|ZP_03700472.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-3C] gi|225005479|gb|EEG43429.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-3C] Length = 879 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 346/922 (37%), Positives = 498/922 (54%), Gaps = 82/922 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+ H+++PSS ++ +DPTLMFTN+GM PFK F G P Q V QK Sbjct: 6 IRAQFLAFFKDKNHQIVPSSPMVIKDDPTLMFTNAGMNPFKPYFLGNTLPKNQRVADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFG-------GYFKERAIQLAWDLLTKEFD 119 C+R GKHNDL+ VG+ HHT FEMLGN+SFG GYFK+ AIQ AW LL F Sbjct: 66 CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGVAKNNVDGYFKQEAIQWAWSLLVDVFK 125 Query: 120 LDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 +D LY+TV+ + D EA LWK I + +I+ DNFW M + GPCG Sbjct: 126 IDPNSLYVTVFEGSKDADQLEMDAEALSLWKAI--VPESQILFGNKKDNFWEMGDQGPCG 183 Query: 171 PCSEIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PCSEI D + + G + + + +EIWNLVFMQF ++ LP +DT Sbjct: 184 PCSEIHVDIRTPEEKASVSGASLVNMDHPQVVEIWNLVFMQFNRKANGILEPLPAKHVDT 243 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMG ER+ VLQ +NYD D+F +I+ E ++G Y + + RVI DH+R+ +F Sbjct: 244 GMGFERLCMVLQGVQSNYDTDVFTPIIKEIEVISGHSYGKDTPTDIAIRVIADHIRAVAF 303 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 IADG LP+N G GYV+RRI+RRA+ Y L EP M L+ L MG A+PEL Sbjct: 304 SIADGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMFKLVQVLSKTMGDAFPELNSQ 363 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 K LI+ ++ E++ F +TL++GL LLD L KD++L G+ AF+LYDT+G P+D+ Sbjct: 364 KQLIQNVIKEEEQSFLRTLEQGLQLLD-TLILTAKDKVLAGEKAFELYDTYGFPIDLTAL 422 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 IL RG A +D F ++++ Q+ R+RA S +++ W L E +FIGYDLL Sbjct: 423 ILSERGYA-LDQSGFEKSMQVQKQRSRA-----ASEVSKEDWEVLLED-DTQEFIGYDLL 475 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + + RKV +K G+ ++VF+ TPFY E Sbjct: 476 ETQVKIAKYRKVTSKK---------------------------EGEMYQLVFNLTPFYPE 508 Query: 524 AGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+GD G +G I D +K+ I + + + +S ++D + R + Sbjct: 509 GGGQVGDKGYLEAPNGDVTYIVDTKKENNEIIHFSSTLPKD---PRVSFKASVDKKQRDR 565 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 S NH+ATHLLH AL ILG+HV+Q GS + LRFD +H +TS +LK IED VN Sbjct: 566 TSKNHTATHLLHQALRAILGTHVAQKGSAVHSKYLRFDFSHFSKVTSEQLKEIEDYVNAR 625 Query: 643 IAQNLPVVTRIMNRE--DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I ++P+ NR A A GA AL G KY D VR + HS LCGGTHV Sbjct: 626 IDGHIPLEEH-RNRPLVQAQADGAMALFGEKYGDTVRSIRFG------HSIELCGGTHVK 678 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +TG+I I ES++ +GIRRIEAIT + + + D+ L+ + + L+++ V + Sbjct: 679 NTGDIWQFKITGESAVASGIRRIEAITSDAVKDYYLKTDQTLQQVLNQLQINTDPVTA-I 737 Query: 761 EEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDAL 816 ++ EE+ +L+ L +++ +V ++N + + +EV D+ +K + L Sbjct: 738 TKLQEEFAQLKTTLTALQKEKAGDVGKSLAASFEEINGVRFLAAEVSLDASAMKDLCFEL 797 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874 + +L+G E KA + ++++LL NA + + + GGGGG+P Sbjct: 798 AAQ-SPNTFLLLGAQYEGKALLACYISKELLTEKSLNAGQVVK-TLGQYIQGGGGGQPFF 855 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 A +GG N +AIA F+ Sbjct: 856 ATAGGKNPEGIAEAIAHAKDFI 877 >gi|222153358|ref|YP_002562535.1| alanyl-tRNA synthetase [Streptococcus uberis 0140J] gi|222114171|emb|CAR42689.1| alanyl-tRNA synthetase [Streptococcus uberis 0140J] Length = 873 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 348/931 (37%), Positives = 513/931 (55%), Gaps = 92/931 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKHMSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y ED +++ W IS L D I +NFW + GP GP +EIF Sbjct: 117 WFAFPKEKLYMTYYPEDMDSYNRW--IS-LGVDPSHLIPLEENFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPGGLPG-----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGM 228 FD+GE G E +RYIEIWN+V QF + + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLVAVMQGAKTNFETDLFMPIISEVEKLSGKPYDQDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG TE + L+ + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGITETFLYKLVVTVGQIMESYYPEILEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIIKREEETFARTIDAGSGHLDQLLAQLKEEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS---------GTTEKIWFSLKEKYGA 454 + G ID F A++EQ+ RARA + GS G TE FS +E+ Sbjct: 411 LAEDAGYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQNETLAGITEASVFSYEEE--- 466 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 LT +S IV ++ ++V E GQ + +V Sbjct: 467 ----------------------------TLTANLSVIV-VDNERSDMVSE---GQAL-LV 493 Query: 515 FDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 FD+TPFYAE GGQ+ D G D I ++TDVQK G +H V L + S V Sbjct: 494 FDRTPFYAEMGGQVADHGVIKNDKGDILAKVTDVQKAPNGQALHTVDV-LASLSIDSSYV 552 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 L ID++ R + NH+ATHLLH AL I+G H +Q GS + LRFD TH + +T+ EL Sbjct: 553 LEIDHKRRYAVEKNHTATHLLHAALHNIIGDHATQAGSLNEEEFLRFDFTHFEAVTAEEL 612 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 + IE+ VN I + V T + + A + GA AL G KY VRVV++ G +S Sbjct: 613 RRIEEEVNQQIWNAIAVNTIETDVDTAKSMGAMALFGEKYGKVVRVVTI-----GDYSVE 667 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTH+S+T EI L IV E I +G RRI A+TGQ+A +++ LK +A+ LK Sbjct: 668 LCGGTHLSNTSEIGLFKIVKEEGIGSGTRRILALTGQQAFEAFRQREDALKEIAANLKAP 727 Query: 753 Q-GNVVGRVEEIWEEYRKLQ---LIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDS 806 Q V +V + E+ R LQ ++ DL + + +++ +S D+ Sbjct: 728 QLKEVPAKVASLSEQVRDLQKENAELKEKAAAAQAGDLFKDVKEANGIRYIAKQVSVSDA 787 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866 L++ D ++K S I++LV EK ++ T+D+ +A +L + A ++ G Sbjct: 788 GALRTFADNWKQKDYSDILVLVASIGEKVNVLVASQTKDV----HAGNLIKELAPIV-SG 842 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GGG+P MA +GG + ++ + ++ VA +K Sbjct: 843 RGGGKPDMAMAGGSDASQIETLLSSVADKMK 873 >gi|300778975|ref|ZP_07088833.1| alanine--tRNA ligase [Chryseobacterium gleum ATCC 35910] gi|300504485|gb|EFK35625.1| alanine--tRNA ligase [Chryseobacterium gleum ATCC 35910] Length = 867 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 322/904 (35%), Positives = 493/904 (54%), Gaps = 85/904 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL++F+ H ++PS+ ++ +DPTLMF+NSGM FK+ F G + P + QK Sbjct: 6 IRQKFLDYFKSKEHLIVPSAPIVLKDDPTLMFSNSGMTQFKDFFLGYKTPTAPRIADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDLD+VGR HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + + LY Sbjct: 66 CLRVSGKHNDLDDVGRDTYHHTMFEMLGNWSFGDYFKKEAIAFAWELLTEVYGIPKENLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T++ D D+ A+ WK S +S D+II DNFW M E+GPCGPCSEI D Sbjct: 126 VTIFEGDASENLDRDQNAYDFWK--SHISEDRIINGNKKDNFWEMGESGPCGPCSEIHID 183 Query: 179 -----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + +P G+ +++ + +E+WNLVFM+F ++ + LP +DTGMG ER+ Sbjct: 184 LRTPEEKAAVP-GISLVNKDHPQVVEVWNLVFMEFNRKADKSLEKLPAQHVDTGMGFERL 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG----NNIVNHRVIVDHLRSSSFLIADG 289 LQ K++NYD D+F LI E+++G KY G + RV+VDH+R+ SF IADG Sbjct: 243 CMALQGKSSNYDTDVFTPLIAKVEELSGKKYTGILEDEKDIAIRVVVDHIRAVSFAIADG 302 Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP++ G GYV+RRI+RR + Y+ R LG EP + L+ L +MG +PE+ + L+ Sbjct: 303 QLPSSGGAGYVIRRILRRGISYSYRFLGMKEPFLYKLVAVLQEQMGPFFPEIEKQGKLVT 362 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 E ++SE++ F T++ GL+ ++ ++ D ++L F+LYDT+G P D+ + I Sbjct: 363 EVIKSEEDSFLNTIETGLIRVEKLIQQTIADNQKVLPTLEVFELYDTYGFPDDLTRIIAE 422 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLR 464 +GL ID F E+QR R++ S +K+ W L+EK F+GYD + Sbjct: 423 EKGLT-IDEEGFKAEREKQRKRSQQDS-------AQKVYDWVVLEEK--PESFVGYDQIE 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 ++ RKV E G+ +VV +PFY E Sbjct: 473 SETYITRYRKV----------------------------ENKDGEFYQVVLSSSPFYPEG 504 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQL 583 GGQ+GD G Q+ + KK G+ + + G+ + +L ++ R+ Sbjct: 505 GGQVGDKGVLENAAESFQVLET-KKENGLIIS---LINGLPKDAGALFYAKVNASERKNS 560 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHS THLLH AL +LG+HV Q GS + PD LRFD +H +T E+ IE+ VN I Sbjct: 561 QANHSVTHLLHEALRDVLGTHVEQKGSYVGPDYLRFDFSHFNKMTEEEIALIEEKVNHKI 620 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 +++ + R + ++A+ GA AL G KY D VR++ S LCGGTHV +T Sbjct: 621 KESIALQEFRSIPIQEALDKGAMALFGEKYGDNVRMIQFG------SSKELCGGTHVKNT 674 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 EI I SE S AGIRRIEAI+G ++ + ++++ L+ LK +VV +E+ Sbjct: 675 SEIGHFKITSEGSAAAGIRRIEAISGDKSEEYFKNLEKQITELSQLLKSK--DVVRSIEK 732 Query: 763 IWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + EE L+ L K K ++ + + + + S +D+ +K ++ L+ Sbjct: 733 LIEENTSLKAEVDALKKEKAKGEIGEWKNAYEQKGNKQLLVKKTS-LDAGSVKDIVFQLK 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++I S + +++ + K + + V++DL + A + + AK + GGGGG P A + Sbjct: 792 REIPSSVTIILS-DADGKPMITVGVSDDLAADYQAGAIVKDLAKEIQGGGGGN-PGFATA 849 Query: 878 GGPN 881 GG N Sbjct: 850 GGKN 853 >gi|260434774|ref|ZP_05788744.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8109] gi|260412648|gb|EEX05944.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8109] Length = 889 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 313/767 (40%), Positives = 457/767 (59%), Gaps = 46/767 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL F+ + GH+ + S+SLIP DPT++ T +GM+PFK +F GQ E+P +A T+ Q Sbjct: 20 IREAFLNFYAERGHKRMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQERPAPRA-TSSQ 77 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T + +D + L Sbjct: 78 KCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTGVYGIDPKNL 133 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIP 184 ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + E Sbjct: 134 VVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPELGN 193 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G+ E+ +R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ NNY Sbjct: 194 EGI--DLEDDDRFIEFYNLVFMQYNRDAEGILTPLANRNIDTGMGLERMAQILQKVPNNY 251 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL LIQA+ + G+ Y N + +VI DH R+ + LI DG+ +N GRGY+L Sbjct: 252 ETDLIFPLIQAAADLAGVDYHHLNDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYIL 311 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG +P ++ + A + A+P +I+ + +I L+ E+ RF +T Sbjct: 312 RRLLRRVVRHGRLLGIDKPFLVTMGEAAIALLKGAHPSVIERQEVILAELQREEARFLET 371 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL VL+ K ++G AF+LYDT+G PL++ Q+I +GLA +D+ F A Sbjct: 372 LERGEKLLAEVLAS--KPTQISGAQAFELYDTYGFPLELTQEIAEEQGLA-VDLDGFEAA 428 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 +EEQR RA+A ++ + + I + ++ AT F GY+ L Sbjct: 429 MEEQRQRAKAAAVSIDLTLQDAIDQVVADQ-AATCFDGYEALDH---------------- 471 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 S V+A+V GE A +G V+VV D TPFY E GGQ+GD G G + + Sbjct: 472 -------DSCVQALVVNGEPASTAKAGDAVQVVLDTTPFYGEGGGQVGDRGVLSGSDLIV 524 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 +I V + + +FVH VERG L ++ +D RR+ NH+ATHLL AL ++ Sbjct: 525 RIESVSRSRD-VFVHAGRVERGELALGDTVKAQVDRACRRRAQANHTATHLLQAALKQVV 583 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 + Q GS + D LRFD +T+ +L+ +E +N I + + + M + A A Sbjct: 584 DPGIGQAGSLVDFDRLRFDFHCPTAVTADQLQQVETLINGWINEAHALQVQEMAIDQAKA 643 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 +GA A+ G KY D VRVV V GV S LCGGTHV++T EI L IV+ES + AGIR Sbjct: 644 AGAVAMFGEKYADLVRVVDVP----GV-SMELCGGTHVANTAEIGLFKIVAESGVAAGIR 698 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 RIEA+ G ++L +D +K L K +V RV + EE + Sbjct: 699 RIEAVAGPAVLAYLNERDSVVKQLGDRFKAQPAEIVDRVAALQEELK 745 >gi|124024771|ref|YP_001013887.1| alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A] gi|205830178|sp|A2BZG2|SYA_PROM1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|123959839|gb|ABM74622.1| Alanyl-tRNA synthetase [Prochlorococcus marinus str. NATL1A] Length = 886 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 308/768 (40%), Positives = 462/768 (60%), Gaps = 48/768 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F+ FF ++ H+ L SSSLIP +DPT++ T +GM+PFK IF G ++ T+ QK Sbjct: 19 IREAFINFFVQHNHQKLASSSLIP-DDPTVLLTIAGMLPFKPIFLGLKESSTPRATSSQK 77 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L T+ F L+ + + Sbjct: 78 CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSTEVFRLNPQNIV 133 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 I+V+ ED EA ++WK++ G+ A++IIR+ DNFWS TGPCGPCSE++FD + G Sbjct: 134 ISVFKEDLEAEQIWKEVVGVDANRIIRMGAADNFWSSGATGPCGPCSELYFDFKPEL-GS 192 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 E+ R+IE +NLVFMQ+ + + L IDTGMGLERMA +LQ+K+NNY+ Sbjct: 193 DEIDLEDDSRFIEFYNLVFMQYNRDLEGNLEPLANCHIDTGMGLERMAQILQKKSNNYET 252 Query: 247 DLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DL LI+A+ + ++YE N N ++I DH R+ + LI DG+ +N GRGY+LRR Sbjct: 253 DLIFPLIKAAALLAQLEYETTNKKNKTSLKIIGDHCRAVTHLICDGVSASNLGRGYILRR 312 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 ++RR + + RL+G +P + L M +AYP+L++ K +I L+ E+ RF +TL+ Sbjct: 313 LIRRMIRHGRLVGIVQPFLPQLAEMAIELMKNAYPQLLEKKKIILNELKIEESRFLETLE 372 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 RG LL + SH + ++++G AF+LYDT+G PL++ ++I +G++ +DI F + Sbjct: 373 RGEKLLAEITSH--ECDLISGAQAFELYDTYGFPLELTEEIANEKGIS-VDINGFENEMA 429 Query: 424 EQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +QR RA+ S+ + G+ E+ SL + T+F GY+ L Sbjct: 430 KQRKRAKEASVSIDLTEEGSIER-EISL---FDETRFEGYEKLE---------------- 469 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 +S V I + E V++AV G V+++ ++TPFYAE+GGQ+GD G + Sbjct: 470 -------TTSTVIGIFKNNESVKQAVQGDLVKIIVNRTPFYAESGGQIGDKGIITSQDLE 522 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + + +V+KK + IF+H IV G+L S+ + + R++ + NH+ATHLL AL Sbjct: 523 VSVENVRKK-KNIFIHSGIVNTGVLEINSSVQMNVTPSFRQRTTSNHTATHLLQSALKLS 581 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 + S VSQ GS ++ LRFD KP+T EL+ +E +N I ++ P+ + M ++A+ Sbjct: 582 IDSSVSQRGSLVSNHRLRFDFNAPKPLTIKELEDMEVRINQWINEDHPIQIKTMPIKEAM 641 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A+GA A+ G KY D VRVV V S LCGGTHV+ T ++ I++E+ I +GI Sbjct: 642 AAGALAMFGEKYGDVVRVVDVP-----GVSMELCGGTHVTRTSQLGTFKIINETGIASGI 696 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 RRIEAI G + +D +K L+ KV +V RV + E + Sbjct: 697 RRIEAIAGPSVLDYFNERDLVVKELSKSFKVQSYEIVERVSSLQLELK 744 >gi|15645855|ref|NP_208033.1| alanyl-tRNA synthetase [Helicobacter pylori 26695] gi|3024653|sp|P56452|SYA_HELPY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|2314404|gb|AAD08285.1| alanyl-tRNA synthetase (alaS) [Helicobacter pylori 26695] Length = 847 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 318/837 (37%), Positives = 466/837 (55%), Gaps = 64/837 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FFQ GH + PS L+P ND TL+FTN+GMV FK+IFTG +P + Q Sbjct: 3 IRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRAASSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+E F +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFANTHAYLKESKEMVVKECFEEEEHFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A D+ F Sbjct: 357 LESGMELFNLSLKHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACADMQGFELC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477 ++EQ R++A G + + ++ Y F+GY+ S F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECSAKVLGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 P Q+V V+ ++TPFYAE GG +GD G D Sbjct: 473 DANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALFKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + I K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 NGEVAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERFEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHVSQ GS + LRFD +H+K + EL+ +ED VN I ++L M Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHAKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS + S LCGG HV +TG I IV ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ ++++LK+ + LK +V+ + ++ E + Q K Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ----KA 733 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + + DL KI VN + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 734 PVSM---DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784 >gi|33239500|ref|NP_874442.1| alanyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81665176|sp|Q7VEG5|SYA_PROMA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33237025|gb|AAP99094.1| Alanyl-tRNA synthetase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 892 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 337/907 (37%), Positives = 507/907 (55%), Gaps = 70/907 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL F+ + GHE++PS+SL+P NDPT++ T +GM+PFK +F G + VT+ QK Sbjct: 20 IRAAFLNFYAERGHEIVPSASLVP-NDPTVLLTIAGMLPFKPVFLGHQDRPSARVTSCQK 78 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK+ AIQ AW+L F L+ + Sbjct: 79 CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKKEAIQWAWELSINVFGLNPSHIV 134 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 I+++ ED+EA ++W+ + G++ +IIR+ DNFWS TGPCGPCSE+++D + G Sbjct: 135 ISIFREDDEAEQIWRDVIGVNPRRIIRMDEKDNFWSSGPTGPCGPCSELYYDFHPEL-GE 193 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ NNY+ Sbjct: 194 EEIDLEDDTRFIEFYNLVFMQYNRNSSGTLTSLANCNIDTGMGLERMAQILQGVANNYET 253 Query: 247 DLFKHLIQASEQVTGMKYEGNNIV---NHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DL L++ + ++YE N + +VI DH R+ LI DG+ +N GRGYVLRR Sbjct: 254 DLIYPLLEKIASLIDVQYEDLNATIKASFKVIGDHTRACVHLIGDGVSASNLGRGYVLRR 313 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 ++RR + + RL+G T+P ++ + M SAYP+L++ + LI + L+ E+ RF +TL+ Sbjct: 314 LLRRVVRHGRLIGITKPFLVQIAEVAIELMQSAYPQLLERRQLIFKELQREETRFLETLE 373 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 +G LL +LS ++ G+ AF+LYDT+G P+++ ++I L +D+ F +A++ Sbjct: 374 KGEKLLAELLSK--APSVITGEAAFELYDTYGFPVELTEEIAEENDLR-VDMKGFKKAMD 430 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQR RA++ ++ + + I + E G T F+GY L +F Sbjct: 431 EQRRRAKSAAMTIDLTLQDTIDKVVSE-VGETNFLGYQQLE--QF--------------- 472 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--- 540 S V+AIV G +E G K+++V + TPFY E GGQ+GD G Sbjct: 473 ------SQVQAIVVNGVSSQECNVGDKIDIVLNMTPFYGEGGGQIGDRGIISSASSDDSE 526 Query: 541 -LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 L D ++ +G FVH +V+ G+L ++ T+D +RR NH+ATHLL AL Sbjct: 527 CLIEIDSVRRVKGAFVHSGLVKNGVLTLGDNVQCTVDSFSRRCAQANHTATHLLQAALKK 586 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 + S ++Q GS + D LRFD +P++ AEL+ IE +N I++ +V M+ +A Sbjct: 587 AVDSDITQAGSLVDFDRLRFDFHFVRPVSGAELEHIEKLINGWISEAHSLVISEMSINEA 646 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 GA A+ G KY + VRVV V S LCGGTHV++T EI L IVSE+ I AG Sbjct: 647 KRVGAIAMFGEKYGEVVRVVDVP-----GVSKELCGGTHVTNTAEIGLFKIVSETGIAAG 701 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEAI GQ +L +D +K L+ K +V RV + +E + L KL Sbjct: 702 IRRIEAIAGQGVLDYLNDRDGVVKILSERFKAQSNEIVDRVIALQDEVKSLT------KL 755 Query: 780 QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ-KKIQSGIIMLVGISKEKKASV 838 + +D A ++ + ++S +S+ L +D + IQS + LV A+V Sbjct: 756 LVKAQDEVAFTKA-LSLKNKVVSLTNSQYLIERLDGVTGDAIQSVVKTLVD-ELGDNAAV 813 Query: 839 LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHMAQSGGPNG 882 ++ DL D+ + +A ++++ G G RP+ AQ+GG + Sbjct: 814 VLAGMPDLNDQKKVILVAAFGSEIIAQGLHAGQFLGPIAEICGGGGGGRPNFAQAGGRDP 873 Query: 883 NKADQAI 889 K D A+ Sbjct: 874 TKLDDAL 880 >gi|323127641|gb|ADX24938.1| alanyl-tRNA synthetase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 872 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 344/913 (37%), Positives = 507/913 (55%), Gaps = 76/913 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT K F + Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPKWFGFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T Y +D++++ W + G+ +I + DNFW + GP GP +EIFFD+G Sbjct: 123 EKLYMTYYPDDKDSYNRWISL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIFFDRGTE 178 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234 E I L E +RYIEIWN+V QF + + E LP +IDTG GLER+ Sbjct: 179 FDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIKEVEKLSGQTYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + IE+ ++ Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVQTVGEIMASYYPEILEKRDFIEKIVK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G LD +L+ L GKD L G FKLYDT+G P+++ +++ G Sbjct: 358 REEETFARTIDAGSGHLDQLLAQLKEAGKD-TLEGKNIFKLYDTYGFPVELTEEMAEEAG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F A++EQ+ RARA + GS G + + E S F Sbjct: 417 YK-IDHDGFKAAMKEQQDRARAAVVKGGSMGMQNETLAGITE--------------SSTF 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + E V + I + N ++ E+V E GQ + +VFDQTPFYAE GGQ+ Sbjct: 462 LYETETVDARLAVIIVDN----------ERSEVVSE---GQAL-LVFDQTPFYAEMGGQV 507 Query: 529 GDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D G A GD I ++ DVQK G +H V L + L ID++ R + Sbjct: 508 ADRGVIKNANGD-IVARVIDVQKAPNGQALHTVDV-LASLALDTVYTLDIDHKRRYAVEK 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL I+G H +Q GS + LRFD TH + +T EL+ IE+ VN I + Sbjct: 566 NHTATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVTVDELRRIEEEVNQQIWK 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 L + T + E A + GA AL G KY VRVV + G +S LCGGTH+++T EI Sbjct: 626 ALAITTTETDVETAKSMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLNNTSEI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L I+ E I +G RRI A+TGQ+A Q+ LK +A LK Q V +V + Sbjct: 681 GLFKILKEEGIGSGTRRILAVTGQQAFESFRKQEYALKEIAHILKAPQMDQVPAKVVSLS 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKK 819 E+ R LQ +A+ K + ++ +VN + +I S+V D+ L++ D ++K Sbjct: 741 EQLRDLQKENAELKEKAAAAQAGDVFKEVKEVNGLRYIASQVSVSDAGALRTFADNWKQK 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++LV E K +VL+ +A ++ ++ A ++ G GGG+P MA +GG Sbjct: 801 DYSEVLVLVAAIGE-KVNVLVASKS---KEVHAGNMIKVLAPIV-SGRGGGKPDMAMAGG 855 Query: 880 PNGNKADQAIAGV 892 + +K +A V Sbjct: 856 SDASKISDLMAAV 868 >gi|226356938|ref|YP_002786678.1| alanyl-tRNA synthetase [Deinococcus deserti VCD115] gi|226318928|gb|ACO46924.1| putative alanine--tRNA ligase (Alanyl-tRNA synthetase) [Deinococcus deserti VCD115] Length = 891 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 321/861 (37%), Positives = 471/861 (54%), Gaps = 70/861 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ----EKPVY 58 S IR FL+FF+ GH LPS S I DPT +FT +GM PFK+ F G + Sbjct: 6 TTSQIREKFLQFFESKGHLRLPSHSTI-APDPTTLFTVAGMQPFKDQFMGAPAVFDGVAN 64 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + VTT QKCVR D++NVGRT RH T FEM+GNFSFG YFK AI AWD LT + Sbjct: 65 KRVTTAQKCVRV----PDIENVGRTRRHLTLFEMMGNFSFGDYFKRDAILWAWDFLTGPE 120 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSM-----AETGPCGP 171 +D ++Y+T+Y +D+EAF W + GL A I R ++NFW GPCGP Sbjct: 121 WMGMDPDKMYVTIYKDDDEAFGYWTQEVGLDASHIHRFDADENFWPANAPLEGPNGPCGP 180 Query: 172 CSEIFFDQGECIPGGL---PGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMS 223 CSEI++D+G + E R++E+WNLVF Q+++Q+ E LP + Sbjct: 181 CSEIYYDRGSNYGDDTWADYAQTRESARFLEVWNLVFPQYDRQDPAEDGTPVLKDLPFKN 240 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSS 283 IDTGMGLER+A+V+Q+ + Y D+F+ ++ +++G YEG V+HRV+ +H+RS Sbjct: 241 IDTGMGLERVASVVQDVPDFYSNDVFRPIVDKVAELSGKPYEGEISVSHRVVAEHMRSVC 300 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 ++ADG +N GRGY LR+I+RRA +A LLG EP + + P + MG AYPEL Sbjct: 301 MILADGTALSNTGRGYTLRKILRRASRHAYLLGMREPALYQIAPVVAAGMGDAYPELRTE 360 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + +E +R+E+ERF KTL+ G+ L +LS + + L+G+ AF LYDT+G PLD+ ++ Sbjct: 361 QGRVEAAIRAEEERFLKTLEGGIQRLGSLLSGMPQGGTLSGEEAFVLYDTYGFPLDLTKE 420 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHS----LGLGSGTTEKIWFSLKEKYGATQFIG 459 I G++ +D + ++LE ++ ARA S L G E + E AT+F+G Sbjct: 421 IAEEYGIS-VDEARYAESLENAQNIARAGSKYGKSELFGGNQEAL-----EGLSATEFVG 474 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 +D L V A+V GE + +G + VV +TP Sbjct: 475 FDHLE-----------------------AEGQVLALVGAGERLSHLSAGSEATVVLSRTP 511 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FY E GG++GDTG +G + D +K G+F+H +VE+G L TE V + Sbjct: 512 FYGEGGGEVGDTGRLEWEGGAGMVRDTRKTPAGVFLHDVLVEQGEL-TEGVTVRGVVGPE 570 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ + +H+ATHLLH AL +LGS V Q GS + D LRFD +H +++ EL +E V Sbjct: 571 RQAIQRHHTATHLLHAALRAVLGSGVRQAGSLVAADRLRFDFSHGAALSAEELSRVETLV 630 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE--YEDGG--VHSSALCG 695 + I+ N PV + M +A A+GA AL G KY ++VRVVSVE E GG V S LCG Sbjct: 631 SRWISANFPVTWQEMPIAEAKAAGATALFGEKYGEKVRVVSVEGDVEYGGQPVSSKELCG 690 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 G HV TG+I ++S+ ++ AG+RRIEA+ G+ A S + + +A+ L S Sbjct: 691 GAHVRRTGDIGAFVLLSDENVAAGVRRIEALAGEAATSWVRERLNGTARVAALLNTSPDG 750 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS--------CHKIADVNFMSHIISEVDSK 807 + RV + + + + A K QL + ++ + +S ++ Sbjct: 751 LEARVTGLQAQLKAAEKEVAAVKRQLAQAQMGSSSGGGAQTRELGGFRVAALKLSGIEGN 810 Query: 808 ELKSVMDALQKKIQSGIIMLV 828 EL+ D L + + +++L Sbjct: 811 ELRGAADKLLDQSGADLVVLA 831 >gi|328945496|gb|EGG39647.1| alanine--tRNA ligase [Streptococcus sanguinis SK1087] Length = 872 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 344/931 (36%), Positives = 512/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAIPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVIKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + AIV VE +G ++F +TP Sbjct: 459 ------SAFNYEKEELTAE-------------LLAIVADDAAVESVETGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G I DG + Q+TDVQK G +H V L S L ID Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LDPLALGQSYKLEID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI + IV E I +G RRI A+T + A + ++E LK++A+ LK Q Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ +A+ K + NV++ + H +F++ +S D Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K + T+D+ +A +L + A ++ Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +A VA L Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|297571413|ref|YP_003697187.1| alanyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595] gi|296931760|gb|ADH92568.1| alanyl-tRNA synthetase [Arcanobacterium haemolyticum DSM 20595] Length = 890 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 343/924 (37%), Positives = 524/924 (56%), Gaps = 66/924 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L++F K+ H + S SLI DP+++FT +GMVPF G EK + + + Sbjct: 3 TAEIRQRWLDYFAKHNHHIAESVSLI-SPDPSILFTIAGMVPFTPYIIGTEKSPHPRIAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 VQKC+R ND+DNVGRT RH TFF+M GNFSFG YFKE AI LA+ LLT D Sbjct: 62 VQKCIRT----NDIDNVGRTTRHGTFFQMCGNFSFGDYFKEGAIDLAFGLLTSSVDEGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L++ RL++T++++D+ +F K+ GL+ I+++ + FWS + GP G C+EI +D Sbjct: 118 GLEKDRLWVTIWEKDDVSFDHLTKVIGLNPRHIVKLKREEIFWSTGQPGPAGSCAEIHYD 177 Query: 179 QG-ECIPGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLE 231 +G E P + G+ + G +RY+EIWNLVF Q+ E + K + L + +IDTG GLE Sbjct: 178 RGPEFGPEAVGGTVDPGGDRYLEIWNLVFDQYLRGEGEGKNFPLLGELEQTAIDTGAGLE 237 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289 R+A +LQ K N Y+ID +IQA+E++TG Y N+ + RV+ DH+RSS LIADG Sbjct: 238 RIAYLLQGKKNMYEIDEVYPVIQATERITGKTYGENDEDDILMRVVADHVRSSMMLIADG 297 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P N+GRGYVLRR++RRA+ RLLGYT+ LLP M +YP L I + Sbjct: 298 VRPGNDGRGYVLRRLIRRAVRSVRLLGYTDVAYPELLPVTKDAMKDSYPVLEAEFDRISQ 357 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E++ F +TL G + + + + I L GD AF L+DT+G P+D+ ++ + Sbjct: 358 IAYNEEQAFRRTLTAGTQIFEQAAAEAKEAGIQLPGDAAFTLHDTYGFPIDLTLEMASEK 417 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGA-TQFIGYDLLRGS 466 G+A +D F Q ++EQ+ RARA + +G + ++ ++ K G T+F+GY + Sbjct: 418 GIA-VDEAGFRQLMQEQKDRARADAQAKKTGHVDATVYHEIQAKSGGDTRFLGY-----T 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 ++ D KV+ I++ G V A + ++++V DQTPF+AE GG Sbjct: 472 DYVA-DGKVI-----------------GILKDGVSVPAAEAPAEIDIVLDQTPFWAEQGG 513 Query: 527 QLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G ++ G + +TDVQ +G+FVH + G + + S+ ID R Q++ Sbjct: 514 QLADHGTISVAGGGLVDVTDVQMPVKGLFVHRGTLTEGSIALDDSVRSAIDIPRREQIAR 573 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 H+ATH++H AL LG +Q GS +P LRFD H + + + L IE VN+ + Sbjct: 574 AHTATHMVHKALHEYLGEQATQAGSENSPSRLRFDFRHGEQVPTTILHDIESRVNERLQD 633 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 NL V +MN E A ASGA AL G KY + VRVVS+ GG S LC GTHVS +G I Sbjct: 634 NLTVSAEVMNIEAAKASGAMALFGEKYGNDVRVVSI----GGDWSRELCAGTHVSDSGAI 689 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ ++ ESSI +G+RRIEA+ GQ A + + L L++ V + ++ + Sbjct: 690 GLVTVLGESSIGSGVRRIEALVGQGAYAAGARERALLSQLSTLTHVRPEELPEHIDTLLN 749 Query: 766 EYRKL-QLIHAKRKLQ-LNVEDLSCHKIADVN---FMSHIISEVDSKE--LKSVMDALQK 818 + + I A RK + L+ + D+N ++H + +V S + +VMD L++ Sbjct: 750 RLKNADKEISALRKEKMLSAMASVLEQRTDINGIAVITHDLGDVASADDVRVAVMD-LRE 808 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874 ++ S ++ L G++KE+ +++ T D A L ++AK+L GGGGGG+P M Sbjct: 809 RLGSTPAVVALTGVAKER--PTIVIATNDAARSKGIKAGALVSVAAKIL-GGGGGGKPDM 865 Query: 875 AQSGGPNGNKADQAIAGVASFLKK 898 AQ GG + + A + + + + Sbjct: 866 AQGGGTDVTQIPHAFDAITAAIAQ 889 >gi|242092594|ref|XP_002436787.1| hypothetical protein SORBIDRAFT_10g008780 [Sorghum bicolor] gi|313471753|sp|C5Z7K4|SYAP_SORBI RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|241915010|gb|EER88154.1| hypothetical protein SORBIDRAFT_10g008780 [Sorghum bicolor] Length = 961 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 347/945 (36%), Positives = 525/945 (55%), Gaps = 108/945 (11%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +IR FLEF+ GH++LPSSSL+P +DPT++ T +GM+ FK IF G+E TT Q Sbjct: 67 AIRRRFLEFYAARGHKILPSSSLVP-DDPTVLLTIAGMLQFKPIFLGKEPRRVPCATTSQ 125 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVGRT RH TFFEMLGNFSFG YFK+ A AW+L TKE+ L RL Sbjct: 126 KCIRT----NDIENVGRTARHQTFFEMLGNFSFGDYFKKEATAWAWELATKEYGLPAERL 181 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 +I+V+++D EAF +W G+ ++I R+ DNFW+ TGPCGPCSEI++D P Sbjct: 182 WISVFEDDNEAFDIWHNEVGVPKERIKRMGAEDNFWTSGATGPCGPCSEIYYD---FYPE 238 Query: 186 GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 ++ G+ R+IE +NLVFMQ+ +++ L + +IDTGMGLERMA +LQ+ NN Sbjct: 239 RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPNN 298 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL +I+ + + + Y + N ++I DH+R+ +L++DG++P+N GRGYV Sbjct: 299 YETDLIFPIIEKAASMAMVSYAKTDDATKTNLKIIGDHMRAVVYLVSDGVIPSNIGRGYV 358 Query: 301 LRRIMRRAMCYARLLGYTE-----------PLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 +RR++RR + RL+G P + ++ +L TE+ P++ + I Sbjct: 359 VRRLIRRVVRMGRLIGIRGDGHGNSEGAFLPSLAEVVISLSTEID---PDVESRRRSILG 415 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLS-------HLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 L+ E+ RF +TL+RG LLD +L + G L+G F LYDT+G P++I Sbjct: 416 ELQREELRFVQTLERGEKLLDELLDGAVLSAGNNGDKPSLSGKDLFLLYDTYGFPVEITA 475 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 +I RG+ +DI F+ +E QR +++A + + L G +I S+ + T F+GY Sbjct: 476 EIASERGVT-VDIEGFDIEMENQRKQSQAAHNVVKLSVGNETEIIKSIPD----TVFLGY 530 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D L S++V+ ++ G V E G +VE++ D+TPF Sbjct: 531 DSL-----------------------SASAVVRGLLVNGNPVNEVSEGSEVEILLDRTPF 567 Query: 521 YAEAGGQLGDTGCAIGDG-------IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 YAE+GGQ+GD G +G ++I DVQK IFVH +++G + + Sbjct: 568 YAESGGQVGDNGFLYVNGGEDRSQAAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEVDA 627 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D + R+ +H+ATHLL AL +++GS SQ GS + D LRFD +P++ EL Sbjct: 628 CVDAKLRQGAKAHHTATHLLQSALKSVVGSETSQAGSLVAFDRLRFDFNFHRPVSEGELT 687 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 IE VN I+ + T++M +DA +GA A+ G KY ++VRVV V GV S L Sbjct: 688 RIELLVNQWISNAAHLETKVMALQDAKNAGAIAMFGEKYGEQVRVVEVP----GV-SLEL 742 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHVS+T EI I+SE I +GIRRIEA+ G ++ +D ++ L S LKV Sbjct: 743 CGGTHVSNTAEIRGFKIISEQGIASGIRRIEAVAGDAFIDYVCARDNYMRRLCSSLKVKA 802 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA---------DVNFMSHIISEV 804 +V GRVE I EE R + + L+ + L +A +V + + +V Sbjct: 803 EDVNGRVETILEELRATR--NEVSSLRSKIAVLKAASLASKATTVEPQNVRIVVENMGDV 860 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 D+ LKS + L +Q +++G S + K S++ + + V + + K + Sbjct: 861 DADGLKSAAEYLIGTLQDPAAVILGSSPGDGKVSLVAAFSPAV------VKMGLQAGKFV 914 Query: 864 GG------GGGGGRPHMAQSGG------PNGNKADQA--IAGVAS 894 GG GGGGG+P+ AQ+GG P+ + +A +AGV+S Sbjct: 915 GGIAKLCGGGGGGKPNFAQAGGRKPENLPDALEKARAEIVAGVSS 959 >gi|205830106|sp|Q0RF65|SYA_FRAAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 881 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 333/895 (37%), Positives = 483/895 (53%), Gaps = 52/895 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR+ FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G + T Sbjct: 2 DTAEIRSRFLNHFARRGHTIVPSASLV-AQDPTLLLVNAGMVPFKPYFLGDLATPWPRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQK VR D++NVGRT RH +FF+M GNFSFG YFK AI A++LL F Sbjct: 61 SVQKVVRT----VDIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELLVDGFGFKP 116 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L+ TVY +D+EA +W+++ L A++I R DNFWSM GPCGPCSEI+FD+G Sbjct: 117 DDLWATVYLDDDEAEGIWREL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGAA 174 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMATVL 237 G G + ERY+E+WNLVFMQ+E+ LP +IDTGMGLERMAT+L Sbjct: 175 Y-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPILRELPARNIDTGMGLERMATIL 233 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N Y+ID+ + ++ + Q+TG +Y + + V RV+ DH R+++ LIADG++P+NE Sbjct: 234 QGVDNLYEIDISRPVLDLAGQLTGRRYGADPADDVRLRVVADHSRTAAMLIADGVVPSNE 293 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ ARLLG EP+M L A+ T MG YPEL+ I +E+ Sbjct: 294 GRGYVLRRLLRRAVRDARLLGAREPVMSELFGAIGTAMGPIYPELVDNAETITGVAVAEE 353 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F +TL G + D + + L GD AFKL+DT+G P+D+ ++ GL+ + Sbjct: 354 ASFAETLRTGTTIFDAAVRQVRSTGAATLGGDEAFKLHDTYGFPIDLTLEMAAEAGLS-V 412 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKED 472 D F + +E QR A+A G + F + + GAT F GY+ L Sbjct: 413 DEAGFRRLMERQRQTAKADRAARRIGNVDLSAFRPILARSGATTFTGYEEL--------- 463 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +GV +V + G + G +V VV D TPFYAE+GGQ D G Sbjct: 464 ----------SRESGVVGLVG--IADGAGLTVVGEGDEVGVVLDATPFYAESGGQEPDFG 511 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 DG +++ DVQ+ + +H V G LR + +D RR +S +H+ATHL Sbjct: 512 LLRFDGGEVEVLDVQRPVPELVLHRVKVRSGELRLGDRVQAEVDENRRRAVSRSHTATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H A LG +Q GS +P LRFD + + L +ED +N++ ++LPV Sbjct: 572 VHAAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLTDVEDEINEVALRDLPVRAF 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + +E+A GA AL G KY D VRVV V G ++ LCGGTHV+S+ ++ + ++S Sbjct: 632 VTTQEEARRLGAMALFGEKYGDAVRVVDV-----GDYARELCGGTHVASSAQLGAVKLLS 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KL 770 ESSI AG RR+E + G A +L + + L++ LK + RV +I R + Sbjct: 687 ESSISAGTRRVEGLVGIDAFRYLAREHLLVSQLSTALKARPDELADRVTDIVGRLRDAER 746 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ---SGIIML 827 +L + L DV ++ + +EV + + L ++ +G + Sbjct: 747 ELDRLRAAAVLAGAGALAEGAEDVGGVAVVTAEVPAGTSPDDVRLLAMDVRGRLAGRPAV 806 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 V + K +S+++V A +L R S L GG GGG+P +AQ GG N Sbjct: 807 VAVVKADGSSIVVVTDSGARSAGLRAGELVRNSWASL-GGKGGGKPDIAQGGGGN 860 >gi|111224623|ref|YP_715417.1| alanyl-tRNA synthetase [Frankia alni ACN14a] gi|111152155|emb|CAJ63885.1| alanyl-tRNA synthetase [Frankia alni ACN14a] Length = 884 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 333/895 (37%), Positives = 483/895 (53%), Gaps = 52/895 (5%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR+ FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G + T Sbjct: 5 DTAEIRSRFLNHFARRGHTIVPSASLV-AQDPTLLLVNAGMVPFKPYFLGDLATPWPRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQK VR D++NVGRT RH +FF+M GNFSFG YFK AI A++LL F Sbjct: 64 SVQKVVRT----VDIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELLVDGFGFKP 119 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 L+ TVY +D+EA +W+++ L A++I R DNFWSM GPCGPCSEI+FD+G Sbjct: 120 DDLWATVYLDDDEAEGIWREL--LPAERIQRRGKEDNFWSMGVPGPCGPCSEIYFDRGAA 177 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMATVL 237 G G + ERY+E+WNLVFMQ+E+ LP +IDTGMGLERMAT+L Sbjct: 178 Y-GREGGPIADEERYLEVWNLVFMQYERGEGAGYDYPILRELPARNIDTGMGLERMATIL 236 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N Y+ID+ + ++ + Q+TG +Y + + V RV+ DH R+++ LIADG++P+NE Sbjct: 237 QGVDNLYEIDISRPVLDLAGQLTGRRYGADPADDVRLRVVADHSRTAAMLIADGVVPSNE 296 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA+ ARLLG EP+M L A+ T MG YPEL+ I +E+ Sbjct: 297 GRGYVLRRLLRRAVRDARLLGAREPVMSELFGAIGTAMGPIYPELVDNAETITGVAVAEE 356 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F +TL G + D + + L GD AFKL+DT+G P+D+ ++ GL+ + Sbjct: 357 ASFAETLRTGTTIFDAAVRQVRSTGAATLGGDEAFKLHDTYGFPIDLTLEMAAEAGLS-V 415 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKED 472 D F + +E QR A+A G + F + + GAT F GY+ L Sbjct: 416 DEAGFRRLMERQRQTAKADRAARRIGNVDLSAFRPILARSGATTFTGYEEL--------- 466 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 +GV +V + G + G +V VV D TPFYAE+GGQ D G Sbjct: 467 ----------SRESGVVGLVG--IADGAGLTVVGEGDEVGVVLDATPFYAESGGQEPDFG 514 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 DG +++ DVQ+ + +H V G LR + +D RR +S +H+ATHL Sbjct: 515 LLRFDGGEVEVLDVQRPVPELVLHRVKVRSGELRLGDRVQAEVDENRRRAVSRSHTATHL 574 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 +H A LG +Q GS +P LRFD + + L +ED +N++ ++LPV Sbjct: 575 VHAAFRRALGEGATQAGSLNSPGRLRFDFHALGAVPPSVLTDVEDEINEVALRDLPVRAF 634 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 + +E+A GA AL G KY D VRVV V G ++ LCGGTHV+S+ ++ + ++S Sbjct: 635 VTTQEEARRLGAMALFGEKYGDAVRVVDV-----GDYARELCGGTHVASSAQLGAVKLLS 689 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--KL 770 ESSI AG RR+E + G A +L + + L++ LK + RV +I R + Sbjct: 690 ESSISAGTRRVEGLVGIDAFRYLAREHLLVSQLSTALKARPDELADRVTDIVGRLRDAER 749 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ---SGIIML 827 +L + L DV ++ + +EV + + L ++ +G + Sbjct: 750 ELDRLRAAAVLAGAGALAEGAEDVGGVAVVTAEVPAGTSPDDVRLLAMDVRGRLAGRPAV 809 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 V + K +S+++V A +L R S L GG GGG+P +AQ GG N Sbjct: 810 VAVVKADGSSIVVVTDSGARSAGLRAGELVRNSWASL-GGKGGGKPDIAQGGGGN 863 >gi|237651172|ref|ZP_04525424.1| alanyl-tRNA synthetase [Streptococcus pneumoniae CCRI 1974] Length = 872 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 343/925 (37%), Positives = 501/925 (54%), Gaps = 82/925 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ H + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQVRQMWLDFWATKAHSVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAITWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD +LY+T Y +D++++ W ++ G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPAEKLYMTYYPDDKDSYNRWIEV-GVDPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYQELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIICEVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G G+++ L + ++ G FKLYDT+G P+++ ++I Sbjct: 352 IEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSVIAGQDVFKLYDTYGFPVELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Y +Q Sbjct: 412 AEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGMQNETLQNITVESVFNYNTSQL-- 468 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S +V + E+ AVS ++F +T Sbjct: 469 ----------------------------SSKLVAIVADNAEV--GAVSEGTASLIFAETS 498 Query: 520 FYAEAGGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + I +T+VQK G +H V L L ID Sbjct: 499 FYAEMGGQVADYGQILDESGKIVATVTNVQKAPNGQALHTVEV-LAPLALNQEYTLAIDS 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL ILG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 NRRHRVMKNHTATHLLHAALHNILGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L V T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 QVNEKIWEALEVKTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSIELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI L IV E I +G RRI A+TG+ A Q++ LK++A+ LK Q V Sbjct: 673 HVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEAYREQEDALKAVAATLKAPQVKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHA--KRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKS 811 +VE + E+ R+LQ +A K K +VN +I S+V D+ L++ Sbjct: 733 PHKVEGLQEQLRQLQKENAELKEKAAAAAAGDIFKDAKEVNGRRYIASQVSVSDAGALRT 792 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D ++K S +++LV +K ++ T+DL +A +L + A ++ G GGG+ Sbjct: 793 FADNWKQKDYSDLLVLVAAIGDKVNVLVASKTKDL----HAGNLVKELAPII-DGRGGGK 847 Query: 872 PHMAQSGGPNGNKADQAIAGVASFL 896 P MA +GG N K + + VA L Sbjct: 848 PDMAMAGGSNQAKIQELLDAVAGKL 872 >gi|325688315|gb|EGD30334.1| alanine--tRNA ligase [Streptococcus sanguinis SK72] Length = 872 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 343/931 (36%), Positives = 512/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E +++ + + AIV VE +G ++F +TP Sbjct: 459 ------SAFNYEKEELIAE-------------LLAIVADDASVESVETGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G I DG + Q+TDVQK G +H V L S L ID Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QEVNEKIWEALAIETVETDIDKAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI + IV E I +G RRI A+T + A ++E LK++A+ LK Q Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ +A+ K + NV++ + H +F++ +S D Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K + ++D+ +A +L + A ++ Sbjct: 787 AGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKSKDV----HAGNLIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +A VA L Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|325694024|gb|EGD35942.1| alanine--tRNA ligase [Streptococcus sanguinis SK150] Length = 872 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 344/931 (36%), Positives = 510/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + AIV VE +G ++F +TP Sbjct: 459 ------SVFNYEKEELTAE-------------LLAIVADDASVESVETGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G I DG + Q+ DVQK G +H V L S L ID Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVKDVQKAPNGQPLHTVEV-LAPLALGQSYKLEID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 Y R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 YSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI + IV E I +G RRI A+T + A ++E LK++A+ LK Q Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ +A+ K + NV++ + H +F++ +S D Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K + T+D+ +A +L + A ++ Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +A VA L Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|327468935|gb|EGF14407.1| alanine--tRNA ligase [Streptococcus sanguinis SK330] Length = 872 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 342/931 (36%), Positives = 511/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ++RARA S+G+ + T + I Sbjct: 412 AEEAGMT-VDRSGFEAAMKEQQNRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + AIV VE +G ++F +TP Sbjct: 459 ------SAFNYEKEELTAE-------------LLAIVADDAAVESVETGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G I DG + Q+TDVQK G +H V L S L ID Sbjct: 499 FYAEMGGQVADHG-QIFDGAGKLVAQVTDVQKAPNGQPLHTVEV-FAPLALGQSYKLEID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L + T + + A GA AL G KY +VRVV++ G +S LCGG Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKKVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI + IV E I +G RRI A+T + A ++E LK++A+ LK Q Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731 Query: 756 VVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ A ++ +V++ + H +F++ +S D Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKDVQETNGH-----SFIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K + T+D+ +A +L + A ++ Sbjct: 787 AGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +A VA L Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|319947816|ref|ZP_08022010.1| alanyl-tRNA synthetase [Dietzia cinnamea P4] gi|319438540|gb|EFV93466.1| alanyl-tRNA synthetase [Dietzia cinnamea P4] Length = 859 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 330/891 (37%), Positives = 476/891 (53%), Gaps = 68/891 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F + GH +PS+SL+ +DP L+F N+GMVPFK F GQE P Y T++QK Sbjct: 6 IRRRFLDHFVRAGHTEVPSASLV-LDDPNLLFVNAGMVPFKPYFLGQETPPYATATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 CVR D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT D +D Sbjct: 65 CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKEGAIRHAWSLLTSSLDDGGFGID 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L++TVY +D+EA+ +W+ + G+ ++I R DN+WSM GPCGPCSEIF+D+G Sbjct: 121 PALLWVTVYLDDDEAYGIWRDVIGVPEERIQRRGMADNYWSMGVPGPCGPCSEIFYDRGP 180 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E + + ++ F LPK +IDTGMG+ER+A Sbjct: 181 AY--GVDGGPEADEDRYIEIWNLVFMQNERGEGSGKDSFEILGPLPKQNIDTGMGVERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292 +LQ N Y+ DL + +I +E+++G KY ++ V RVI DH R++ LI+DG+ P Sbjct: 239 FLLQGVENVYETDLLRPVIDTAERLSGAKYGADSASDVRFRVIADHARTAYMLISDGVTP 298 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGY+LRR++RR + RLLG T M + + +G ++PE + IE Sbjct: 299 GNEGRGYILRRLLRRIVRSVRLLGATGETMAEFMATVRDAIGPSFPETVSGYERIERIAV 358 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ F KTL+ G L + + +L+G AF L+DTHG P+D+ ++ GL Sbjct: 359 AEEAAFLKTLESGTQLFERAAESARRSGAAVLSGQQAFALHDTHGFPIDLTLEMASEAGL 418 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F + EQR+RA+A S + + G T F G+ Sbjct: 419 Q-VDEEGFRSLMSEQRARAKADSQAKKHAHADLSVYRDFLDAGETVFTGF---------- 467 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 DLT+ S + IV G+ V A G +VE V D+TPFYAE+GGQLGD Sbjct: 468 -----------TDLTD--ESRLLGIVSGGQAVPVAREGDEVEFVLDRTPFYAESGGQLGD 514 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G G ++++ DVQK + +++H ++ G + + +D + R+ + HSAT Sbjct: 515 RGMISTAGFQMRVDDVQKIGKKLWIHKGVLTGGEVEAGQIVTAAVDPEWRKGATQGHSAT 574 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL ILG Q GS P +RFD S I + L IE+ N + + V Sbjct: 575 HLVHAALRQILGPEAVQAGSLNKPGYMRFDFNWSGSIPADVLAQIEEVTNSAVDADYGVN 634 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T ++A GA AL G Y VRVV + GG S LCGGTHVSS+ +I + + Sbjct: 635 TIETTLDEAKRMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVSSSAQIGPVSL 690 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV---------- 760 + E+S+ +GIRR+EA G A H + + LA+ LK + R+ Sbjct: 691 LGEASVGSGIRRVEAYVGMDAYRHQARERALVSGLATSLKAPADELPDRIAALTAKLRET 750 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E+ E R QL L + EDL V F++H + +L+++ L+ ++ Sbjct: 751 EKALESLRAAQLASQAGDLLASAEDLDG-----VRFLAHSAPGGAAGDLRTLASDLKGRL 805 Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGG 869 S G+++L ++K V+ V A DL + + LG GGG Sbjct: 806 GSDAGVVLLTAPGQDKVPFVIAVTPAAQERGLRAGDLVKAISPALGARGGG 856 >gi|300741580|ref|ZP_07071601.1| alanine--tRNA ligase [Rothia dentocariosa M567] gi|300380765|gb|EFJ77327.1| alanine--tRNA ligase [Rothia dentocariosa M567] Length = 893 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 331/920 (35%), Positives = 502/920 (54%), Gaps = 73/920 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I ++EFF+K GH ++PS+SLI N+P MFT +GMVPF F G+E P + T+VQK Sbjct: 6 ISKRWIEFFEKRGHTVVPSASLI-SNEPGAMFTIAGMVPFIPYFLGRETPPFSRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 C+R D++ VG+T RH TFF+M GNFSFG YFKE+AI A++LLT D LD Sbjct: 65 CIRT----LDIEEVGKTARHGTFFQMAGNFSFGDYFKEQAIPFAYELLTASQDEGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++T+Y+ D EAF +W K G ++I R+ +N+WS + GP GP SEIF+D+G Sbjct: 121 PERLWVTIYEGDNEAFDVWTKTVGFPEERIQRMGMKENYWSTGQPGPAGPDSEIFYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERFI----LPKMSIDTGMGLERMAT 235 G G + + +RYIEIWNLVFMQ+++ +E F LPK +IDTG+G+ER+A Sbjct: 181 AY-GKEGGPAVDDDRYIEIWNLVFMQYQRGEGIGKEDFEILGELPKKNIDTGLGVERLAM 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLRSSSFLI 286 +LQ N Y+ D + ++ A+ +++G KY G+ + V RV+ DH+RSS LI Sbjct: 240 LLQGVENFYESDQVRPVLDAASKLSGKKYHGSESPEDLGYEDDVRMRVVADHIRSSLMLI 299 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG+ P+NEGRGY+LRR+MRRA+ RLLG TEP + L PA M A+P + Sbjct: 300 ADGVTPSNEGRGYILRRLMRRAIRAMRLLGVTEPCLPILFPASRDAMAGAFPYVADDFER 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 I +E++ F T++ G L+ ++ ++ ++G AF L+DT+G P+D+ ++ Sbjct: 360 ISRIAYAEEKAFLHTIETGTERLEEAVATAKENGSNSVSGAEAFALHDTYGFPIDLTLEM 419 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 G+ +D +F + + EQR RA+A + K K GA DL Sbjct: 420 AAEAGVK-VDEKAFRELMAEQRHRAQADA---------------KAKKGAFA----DLSE 459 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 K + E + + + ++A+++ G V A +G K+EVV D+TPFYAE Sbjct: 460 LRKLVDERGSIFTGYTELR----TETHLRALLKDGVSVPVAKAGDKIEVVLDETPFYAEG 515 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ DTG G+G + + DVQ+ +G+ VH A+V G +V +D Q RR Sbjct: 516 GGQAADTGVITGNGFVIDVQDVQQPVKGLSVHRAVVREGEAHPGAEVVAQVDVQRRRDGE 575 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HS TH++H AL +LG+ +Q GS LRFD + ++ + + +E+ N I Sbjct: 576 KAHSGTHIVHAALHQVLGNEATQRGSFNKEGYLRFDFAWGESLSDSAKREVEEVANLAIR 635 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N V+ R M +A A GA +L G KY + VR+V + GG S LCGGTHV ++ E Sbjct: 636 DNHEVIAREMPLAEAKALGAMSLFGEKYGNIVRMVEI----GGEFSRELCGGTHVGTSSE 691 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--------NV 756 I L +++E S+ +G RR+EA+ G + HL + + L +KV Sbjct: 692 IGSLTLLTEQSVGSGNRRVEALVGMNSFEHLAAERTLVNQLTGMMKVQSSAELPEKINQT 751 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMD 814 + +++ +E KL+ + KLQ L + I V ++H E+D+ ++S+ Sbjct: 752 LAKLKSAEKELEKLR----REKLQAEAGKLLENAQTIGSVRVLTHHAGELDANGVRSLAL 807 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRP 872 L+ + S ++ V++V T + A L RL+A VL GGGGGG+ Sbjct: 808 DLRSRFGSEAAVVAVTGVANGRPVILVATNEGAREAGIKAGALVRLAASVL-GGGGGGKD 866 Query: 873 HMAQSGGPNGNKADQAIAGV 892 +AQ GG + +K +A+ + Sbjct: 867 DVAQGGGQDASKVSEALDAI 886 >gi|317178465|dbj|BAJ56253.1| alanyl-tRNA synthetase [Helicobacter pylori F30] Length = 847 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 319/833 (38%), Positives = 466/833 (55%), Gaps = 56/833 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++EQ R++A G + + ++ Y +F GY+ C K Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNVYAPNEFAGYETTE-----------CCAKAL 461 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 + I EA Q+ V+ ++TPFYAE GG +GD G + D Sbjct: 462 GFFDSDFKEIT-----------EANPNQEAWVLLEETPFYAEGGGAIGDRGALLKDNEEA 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 I K G+ +++ + + + + D R +++ +HSATHLL AL +L Sbjct: 511 AIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKD 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL KY + VRVVS + S LCGG HV +TG I IV ES + +G+R Sbjct: 629 KGALALFSEKYAENVRVVSFKEV-----SIELCGGIHVENTGLIGGFRIVKESGVSSGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ G+ ++++LK+ LK +V+ + ++ E + Q K + Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVMAGINKLKESVKNSQ------KAPV 735 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +V DL KI VN + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 736 SV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKNKHERLLAMVFKKENER 784 >gi|225868896|ref|YP_002744844.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus] gi|225702172|emb|CAW99880.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus] Length = 872 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 340/917 (37%), Positives = 508/917 (55%), Gaps = 76/917 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FD + Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++++ W + G+ +I + +NFW + GP GP +EIFFD+GE Sbjct: 123 EKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIFFDRGEA 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 YDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIKEVEKLSGQAYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + IE+ ++ Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFIEKIIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G LD +L+ L G+D L+G FKLYDT+G P+++ +++ G Sbjct: 358 REEETFARTIDAGSGHLDQLLAQLKEKGQDR-LDGKDIFKLYDTYGFPVELTEELAEDAG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F A++EQ+ RARA ++ GS G + + E S+F Sbjct: 417 YK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQNETLAGITEP--------------SEF 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + E T V+S + I+ E E GQ + +VFDQTPFYAE GGQ+ Sbjct: 462 LYE-------------TETVASRLSVIIVDNERSEMVSEGQAL-LVFDQTPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G D L ++ DVQK G +H V L + L ID++ R + N Sbjct: 508 ADHGVIKNDKGDLVARVIDVQKAPNGQPLHTVEV-LASLALDTVYTLAIDHKRRYAVEKN 566 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN+ I + Sbjct: 567 HTATHLLHAALHKVIGKHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIWKA 626 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 L + T + E A A GA AL G KY VRVV + G +S LCGGTH+S++ EI Sbjct: 627 LAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSEIG 681 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765 L I+ E I +G RRI A+TGQ+A Q++ LK +A LKV Q + +V + E Sbjct: 682 LFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDTLKEIAHTLKVPQIEQLPSKVVSLSE 741 Query: 766 EYRKLQ---LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKK 819 + R LQ ++ D+ K+ + N + +I SEV D+ L++ D +++ Sbjct: 742 QIRDLQKEIAELKEKAAAAQAGDV-FKKVQEANDLRYIASEVSVSDAGALRTFADNWKQR 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 S +++L S +K +VL+ + R +A +L + A ++ G GGG+P MA +GG Sbjct: 801 DYSDVLVLAA-SIGEKVNVLVASKD---KRAHAGNLIKALAPIV-SGRGGGKPDMAMAGG 855 Query: 880 PNGNKADQAIAGVASFL 896 + +K + +A V L Sbjct: 856 SDASKLSELLAAVPEHL 872 >gi|324990574|gb|EGC22510.1| alanine--tRNA ligase [Streptococcus sanguinis SK353] Length = 872 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 343/931 (36%), Positives = 511/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + A+V VE SG ++F +TP Sbjct: 459 ------SAFNYEKEELTAE-------------LLAVVADDAAVESVESGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G I DG + Q+TDVQK G +H V L S L ID Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI + IV E I +G RRI A+T + A ++E LK++A+ LK Q Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ +A+ K + +V++ + H +F++ +S D Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKDVQETNGH-----SFIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K + T+D+ +A +L + A ++ Sbjct: 787 AGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +A VA L Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|322372372|ref|ZP_08046908.1| alanine--tRNA ligase [Streptococcus sp. C150] gi|321277414|gb|EFX54483.1| alanine--tRNA ligase [Streptococcus sp. C150] Length = 872 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 337/916 (36%), Positives = 507/916 (55%), Gaps = 74/916 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++LIP NDPTL++ NSG+ K F G P +T Sbjct: 7 AQIRQMWLDFWKSKGHAVEPSANLIPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI ++LLT FD + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAITWGYELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS +F I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDNM-SFKVIADHIRSLAFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K IE+ ++ Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGKIMESYYPEVLEKKDFIEKIVK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G +LD +L++L GKD + D+ FKLYDT+G P+++ +++ G Sbjct: 358 REEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDI-FKLYDTYGFPVELTEELAEDEG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F A++EQ+ RARA + GS G ++ S+F+ Sbjct: 417 FK-IDHEGFKAAMKEQQDRARASVVKGGS-------------MGMQNETLANITEPSEFL 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ED S + IV + SGQ + +VF+QTPFYAE GGQ+ Sbjct: 463 YEDE-------------AAESRLSVIVADDARHDTVNSGQAL-LVFEQTPFYAEMGGQVA 508 Query: 530 DTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G I D + ++ DVQ+ G +H VE G L + L ID+ R ++ N Sbjct: 509 DHGT-ISDAAGTVVARVVDVQRAPNGQPLHTVEVE-GELVVGANYKLEIDHTRRHRVMKN 566 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL I+G+H Q GS + LRFD TH + +TS EL++IE+ VN+ I + Sbjct: 567 HTATHLLHAALHNIIGNHAVQAGSLNEQEFLRFDFTHFEAVTSEELRAIEEQVNEEIWKA 626 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 PV T + + A + GA AL G KY VRVVS+ G +S LCGGTHV++T EI Sbjct: 627 TPVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIG 681 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765 + IV E I +G RRI A+T + A +++ LK++A+ LK Q V +V + E Sbjct: 682 MFKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQE 741 Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820 + LQ +A K + + + N + +I S+V D+ L++ D ++ Sbjct: 742 QLHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQAD 801 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++L EK ++ ++D+ +A ++ ++ A ++ G GGG+P MA +GG Sbjct: 802 YSDVLVLAAHIGEKVNVLVASKSKDV----HAGNVIKVLAPIV-SGRGGGKPDMAMAGGS 856 Query: 881 NGNKADQAIAGVASFL 896 + N ++ VA L Sbjct: 857 DANGIQDLLSAVAEQL 872 >gi|308177509|ref|YP_003916915.1| alanine-tRNA ligase [Arthrobacter arilaitensis Re117] gi|307744972|emb|CBT75944.1| alanine-tRNA ligase [Arthrobacter arilaitensis Re117] Length = 896 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 327/913 (35%), Positives = 498/913 (54%), Gaps = 68/913 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I +++FF GH +PS+SL+ DP+L+FT +GMVPF T +E+ Y T+VQK Sbjct: 6 IARRWVDFFVSKGHTAVPSASLVSA-DPSLLFTVAGMVPFIPYLTAREEAPYSRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R G D++ VG+T RH TFF+M GNFSFG YFK+ AI AW+LLT + LD Sbjct: 65 CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKKEAIHFAWELLTSSLEDGGYGLD 120 Query: 122 QRRLYITVYDE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 + RL++TVY++ D EA ++W+ G+ A++++ DN+W+ + GP GPCSEI++ Sbjct: 121 KERLWVTVYEDGDEKDTEARRIWEDEIGMPAERVVGTGKEDNYWNTGQPGPGGPCSEIYY 180 Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLE 231 D+G G G + + RY+EIWNLVFMQ+ + + LPK +IDTG+GLE Sbjct: 181 DRGPAY-GMEGGPAVDETRYVEIWNLVFMQYRLSAVRSKTDFDVAGELPKRNIDTGLGLE 239 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNH------RVIVDHLRSS 282 R+A +LQ N Y+ D + ++ + ++ + Y E NH R+I DH+RSS Sbjct: 240 RLAMILQGVENMYETDQVRPVLDKAAELASVTYTSTEDPADPNHATDVRLRMIADHIRSS 299 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 LI+D + P NEGRGYVLRR++RRA+ RL+G ++ LLP M YPE+ Sbjct: 300 LMLISDQVTPGNEGRGYVLRRLIRRAVRAMRLMGVDSEVLPELLPVSRDAMKGVYPEVEA 359 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401 I +E+ F +T+ G LD L H ++ + L+GD AF L+DT+G P+D+ Sbjct: 360 DFERIARIAYAEERAFRRTIASGTTRLDEALGHAKEEGKNLSGDDAFALHDTYGFPIDLT 419 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 +I GL+ +D F + + EQR+RA+ + +G + ++ + G F GYD Sbjct: 420 LEIAAEAGLS-VDEPRFRELMNEQRTRAQKDAKAKKAGHADLSVYNKLAEAGNVHFTGYD 478 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L G S ++ I++ G++V A GQ++++V ++TPFY Sbjct: 479 TLEGE-----------------------SSIRGIIRDGQLVPFAEQGQEIDLVLNETPFY 515 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE+GGQ GD+G GDG L++TDVQ +G+ VH +V G L E + +D RR Sbjct: 516 AESGGQAGDSGLITGDGFVLEVTDVQAPVKGLNVHKVVVREGELPAEALVRTQVDAMRRR 575 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 HSATHL+H AL +LG +Q GS LRFD + ++ +++A +E+ VN Sbjct: 576 SGEQAHSATHLVHAALRELLGPTATQAGSFNKAGYLRFDFSWAEALSAAARSEVEEVVNL 635 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I N VVT M +A GA +L G KY++ VRVV E G S LCGGTHV + Sbjct: 636 AITSNYQVVTNEMALSEAKKLGAMSLFGEKYSNDVRVV----EMNGDWSRELCGGTHVDT 691 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T I L ++SE+S+ +G RR+EA+ G A H + + L+ +V V RV Sbjct: 692 TARIGQLTLLSEASVGSGNRRVEALVGMEAFRHGAAERALVSELSGLFRVPSSQVSERVN 751 Query: 762 EIWEEYR--KLQLIHAKRKLQLNVEDLSCHK---IADVNFMSHIISEVDSKE-LKSVMDA 815 + + + + Q+ K + L K I ++H +DS + L+++ Sbjct: 752 DTVAKLKAAEKQIAELKSQAMLAQSAALLEKVVTIGSTRLLAHNAGAIDSADALRTMALD 811 Query: 816 LQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 L+ K+ ++ +I+L+G++ + + + E + F A L R + VL GGGGGG+ Sbjct: 812 LRGKLGSEAAVIVLIGVANGRPLVLAVTNDEARANGFKAGALVRTATGVL-GGGGGGKDD 870 Query: 874 MAQSGGPNGNKAD 886 MAQ GG + +K D Sbjct: 871 MAQGGGQDASKID 883 >gi|50914453|ref|YP_060425.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10394] gi|59798488|sp|Q5XBH1|SYA_STRP6 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|50903527|gb|AAT87242.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10394] Length = 872 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 334/918 (36%), Positives = 505/918 (55%), Gaps = 74/918 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P++++++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELIEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ +A+ K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVA 893 +GG + +K + +A VA Sbjct: 852 MAGGSDASKIAELLAAVA 869 >gi|304383973|ref|ZP_07366429.1| alanine--tRNA ligase [Prevotella marshii DSM 16973] gi|304334865|gb|EFM01139.1| alanine--tRNA ligase [Prevotella marshii DSM 16973] Length = 875 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 324/921 (35%), Positives = 494/921 (53%), Gaps = 91/921 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR ++ +FF++ GH ++PS+ ++ +DPTLMFTN+GM +K+I G P + Sbjct: 7 NEIRDSYKKFFEEKGHTIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTGNPEPRRRADS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+ L LD + Sbjct: 67 QKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIDYAWEYLVDVLQLDPKD 126 Query: 125 LYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LY+TV+ + D EA W+K L AD II+ +DNFW M +TGPCGPCSEI Sbjct: 127 LYVTVFEGSPEEQLEYDSEAASYWEK--HLPADHIIKGNKHDNFWEMGDTGPCGPCSEIH 184 Query: 177 FD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 D Q + G +++ + IEIWN+VFMQ+ ++ L IDTGMG ER Sbjct: 185 LDSRTPQEKAEISGAALVNKDNPQVIEIWNIVFMQYVRKANGALEPLSMKVIDTGMGFER 244 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 + LQ K +NYD D+F+ +I+ +++G+ Y E V RV+ DHLR+ +F IADG Sbjct: 245 LVRALQGKNSNYDTDIFQPIIREITKLSGITYGAEEQTDVAMRVVADHLRAVAFSIADGQ 304 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP N GYV+RRI+RRA+ YA LG E + LLP L EMG AYPEL + LI Sbjct: 305 LPGNAKAGYVIRRILRRAVRYAYTFLGQKEAFLHRLLPVLIKEMGDAYPELPAQRELIGR 364 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407 ++ E++ F +TL++G+ LL + + + ++L+G AF+L+DT+G PLD+ + ++C Sbjct: 365 VMKEEEDSFLRTLEKGINLLTAEIERMQTEGRKVLDGVQAFRLFDTYGFPLDLTE-LICR 423 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +D FN +++Q+ RAR + W +L++ G QF+GYD Sbjct: 424 EHGYSVDEAQFNAEMQKQKDRARN-----AAQVENSDWVALRQ--GEQQFVGYDYTEHEC 476 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + RKV +K E+V D TPFY E GGQ Sbjct: 477 HILRYRKVTQKK----------------------------NTYFELVLDYTPFYGEMGGQ 508 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 +GDTG + + +++ D K+ +H IV E + + +D + R + NH Sbjct: 509 VGDTGVLVSEDETVEVIDT-KRENNQSIH--IVSALPKNLEANFMACVDTEKRAASAANH 565 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL + L +LG HV Q GS ++ D LRFD +H + +T EL+ +E VN +I Q++ Sbjct: 566 TATHLLDYVLKQVLGEHVEQKGSYVSADTLRFDFSHFQKVTDDELRQVERMVNAMIRQDI 625 Query: 648 PVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 P+ R E+A GA +L G KY D+VRVV S CGG H +STG I Sbjct: 626 PLDEHRDTPIEEAKQMGAISLFGEKYGDKVRVVRFG------PSCEFCGGIHAASTGRIG 679 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + IVSESS+ AGIRRIEA+TG+ ++ L+ + + N + + E+ Sbjct: 680 MFKIVSESSVAAGIRRIEALTGKLCEEMFYSVEDTLRDIKALF-----NNAKDLRTVLEK 734 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIADVNFM-------------SHIISEVDSKELKSVM 813 Y + ++ +E + + M + ++++ K ++ Sbjct: 735 Y-----MDEHDNMRREIEQFQAQAVERMKSMLIERAVERRGIKVVKAVLPIEAQVAKDLV 789 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGR 871 +++ I ++ +VG + +K + I++++D++ + NA + R +AK++ GGGGGG+ Sbjct: 790 FKIREAIPQHLLCVVGSTAHEKPLLSIMLSDDMVKEQQLNAGQMVREAAKLI-GGGGGGQ 848 Query: 872 PHMAQSGGPNGNKADQAIAGV 892 PH A +GG N + + AI V Sbjct: 849 PHYASAGGKNLDGINAAIDKV 869 >gi|194476839|ref|YP_002049018.1| alanyl-tRNA synthetase [Paulinella chromatophora] gi|171191846|gb|ACB42808.1| alanyl-tRNA synthetase [Paulinella chromatophora] Length = 891 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 341/906 (37%), Positives = 518/906 (57%), Gaps = 67/906 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF K GH+ + S+ LIP +D T++ T +GM+PFK IF G+E+P + T+ Sbjct: 16 AEIREAFLDFFAKRGHQRMASALLIP-DDSTVLLTIAGMLPFKPIFLGREQPPALSATSS 74 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVG+T RHHTFFEMLGNFSFG YFKE+AI AW+L T+ F LD Sbjct: 75 QKCIRT----NDIENVGKTARHHTFFEMLGNFSFGNYFKEQAIIWAWELSTEVFGLDPAN 130 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L ++++ ED EA +W+ + G++ +IIR+ DNFW+ GPCGPCSEI++D + Sbjct: 131 LVVSIFQEDNEAALIWQNLIGVNPKRIIRMGAKDNFWASGPIGPCGPCSEIYYDFHPDL- 189 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G + E+ R+IE +NLVFM+ ++ L +IDTGMGLERMA +LQ+K+NNY Sbjct: 190 GHDDINLEDDSRFIEFYNLVFMESNCDSQGNLTPLENKNIDTGMGLERMAQILQKKSNNY 249 Query: 245 DIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL LI+ + + G+ Y N ++ +VI DH R+ S LI DG+ +N GRGY+L Sbjct: 250 ETDLIFPLIKKAASLAGIDYSEVNEKGKISLKVIGDHSRAISQLICDGVSASNLGRGYIL 309 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RR++RR + + RLLG + ++ + A M AYP+L + + +I L E+ RF +T Sbjct: 310 RRLLRRVVRHGRLLGINDHFLVAMGEASIELMSKAYPQLEEKRDIILNELAQEEARFLET 369 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+RG LL +L +++ ++G+ AF+LYDT+G PL++ Q+I G +D+ F A Sbjct: 370 LERGEKLLSDILK--SENQQISGEQAFELYDTYGFPLELTQEITQEHGRT-VDVAGFEVA 426 Query: 422 LEEQRSRARAHSLGLGS---GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 ++ QR RA+ + + T E I S+K T F GY++L DR CQ Sbjct: 427 MKAQRQRAKEAIVTIDPTLRSTIEGIAESIK----PTLFFGYEVL--------DRS--CQ 472 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 V A++ + E+V+EA +G V+V+ D TPFY E+GGQ+GD G +G Sbjct: 473 -------------VVALIVKDELVQEASTGDVVKVILDGTPFYGESGGQVGDRGMLLGSE 519 Query: 539 IR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + I + + +G+F+H +++G LR ++ +D RR+ +H+ATHLL Sbjct: 520 TEKTSLIVIIENVSRNQGLFIHSGRIKKGTLRIGDLVIAKVDTHLRRRAQAHHTATHLLQ 579 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL ++ + +SQ GS + D LRFD ++ I+ +L+ IE+ +ND I + V M Sbjct: 580 SALKQLVDASISQAGSLVDFDRLRFDFSYPGAISLEKLEKIENLINDWINEIHRVEVTEM 639 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E A +GA A+ G KY VRVV++ S LCGGTHVS+TGEI L I+SE+ Sbjct: 640 KLEQAKVNGAIAMFGEKYGAYVRVVNIPNV-----SMELCGGTHVSNTGEIGLFKIISET 694 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR------ 768 + +GIRRIEAI G +L +D +K L K V+ RV + +E + Sbjct: 695 GVASGIRRIEAIAGTAVLPYLNDRDRLVKELGDHFKAPPSEVMVRVIALQDELKTTNKAL 754 Query: 769 ---KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 + +LI AK + + +L + D + + V + L + LQ+++ Sbjct: 755 LTARSELISAKSAILASQVEL----VGDFQILVSSFTGVQAALLSTAAKQLQEQLGDNTA 810 Query: 826 MLVG-ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +L+G I +E K S + +D++ R NA + AK L GGGGGGR ++AQ+GG N Sbjct: 811 VLLGSILEEGKVSFVAAFGKDVVQRGLNAGKVVNHIAK-LCGGGGGGRANLAQAGGRNLK 869 Query: 884 KADQAI 889 + A+ Sbjct: 870 SFESAL 875 >gi|116512579|ref|YP_811486.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11] gi|123320246|sp|Q02XE9|SYA_LACLS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116108233|gb|ABJ73373.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris SK11] Length = 872 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 336/914 (36%), Positives = 498/914 (54%), Gaps = 71/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF+ GH + PS SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRLTNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF+ AI AW+LLT F+ Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFEFPA 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LYIT Y D++ + W ++ G+ ++ I DNFW + GP GP +EIFFD+GE Sbjct: 123 EKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDRGEI 178 Query: 183 IPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 GL +E E +RYIEIWN+V QF + E LP+ +IDTGMGLERM Sbjct: 179 YDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLERMV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPA 293 ++Q N+D DLF +I+ E+++G+ Y ++ ++ +VI DH+RS SF I DG LP Sbjct: 239 CIIQGGKTNFDTDLFLPIIREIEKLSGITYSPDSENMSFKVIADHIRSLSFAIGDGALPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + I + + Sbjct: 299 NEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDR 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+E F +T+D G L+D +L +L GKD I D+ F+LYDT+G P+++ +++ G Sbjct: 359 EEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADI-FRLYDTYGFPVELTEELAEDEGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F A++ Q+ RARA + GS GA + SKF+ Sbjct: 418 K-IDHEGFKVAMKAQQDRARAAVVKGGS-------------MGAQNETLSSIEVDSKFLY 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 ED+K + + ++ E+V+E V+G K ++VFD TPFYAE GGQ+ D Sbjct: 464 EDKKSQAK-------------LLVAIKDDELVDE-VTG-KAQLVFDVTPFYAEMGGQVAD 508 Query: 531 TGC-AIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G DG + + DVQ G + H++ L+ + L ID + R + NH+ Sbjct: 509 HGVIKNADGQEVATVLDVQHAPHGQNL-HSVETTSPLKVGETYTLEIDEERRSAVVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL I+G+H Q GS + LRFD TH +T EL IE VN++I Q+L Sbjct: 568 ATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSLK 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + A GA AL G KY VRVV + G +S LCGGTH +T +I L Sbjct: 628 VETIETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSQIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767 I+ E I +G+RRI A+TGQ+A + L +A +K Q + +V +V + +E Sbjct: 683 KIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVAGLVKAPQASQIVAKVSNLQDEL 742 Query: 768 RKLQLIHAKR--KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + Q + KL + D + + V+F++ ++ D+ L+++ D ++K S Sbjct: 743 KAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDANGLRNLADIWKQKELS 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++LV EK + ++ + D+ A +L + A + G GGG+P MA +GG N Sbjct: 803 DVLVLVATIGEKVSLLVASKSSDV----KAGNLVKELAPFV-DGRGGGKPDMAMAGGSNA 857 Query: 883 NKADQAIAGVASFL 896 + + VA L Sbjct: 858 AGIPELLTAVAEKL 871 >gi|125624689|ref|YP_001033172.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris MG1363] gi|205830128|sp|A2RME6|SYA_LACLM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|124493497|emb|CAL98475.1| AlaS protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071483|gb|ADJ60883.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. cremoris NZ9000] Length = 872 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 340/914 (37%), Positives = 497/914 (54%), Gaps = 71/914 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF+ GH + PS SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRLTNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF+ AI AW+LLT F+ Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIAFAWELLTSSEWFEFPA 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LYIT Y D++ + W ++ G+ ++ I DNFW + GP GP +EIFFD+GE Sbjct: 123 EKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDRGEI 178 Query: 183 IPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 GL +E E +RYIEIWN+V QF + E LP+ +IDTGMGLERM Sbjct: 179 YDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNANPAIPRSEYPELPQKNIDTGMGLERMV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPA 293 ++Q N+D DLF +I+ E+++G Y ++ ++ +VI DH+RS SF I DG LP Sbjct: 239 CIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + I + + Sbjct: 299 NEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDR 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+E F +T+D G L+D +L +L GKD I D+ F+LYDT+G P+++ +++ G Sbjct: 359 EEETFNRTIDAGQKLIDELLVNLKAEGKDRIEGADI-FRLYDTYGFPVELTEELAEDEGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 I+ F A++ Q+ RARA + GS GA + SKF+ Sbjct: 418 K-IEHEGFKVAMKAQQDRARAAVVKGGS-------------MGAQNETLSSIEVDSKFLY 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 ED+K + + ++ E+V+E V+G K ++VFD TPFYAE GGQ+ D Sbjct: 464 EDKKAQAK-------------LLVAIKDDELVDE-VTG-KAQLVFDVTPFYAEMGGQVAD 508 Query: 531 TGC-AIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G DG + + DVQ G + H++ L+ + L ID + R + NH+ Sbjct: 509 HGVIKNADGQVVATVLDVQHAPHGQNL-HSVETISPLKVGETYTLEIDEERRSAVVKNHT 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL I+G+H Q GS + LRFD TH ++ EL IE VN++I Q+L Sbjct: 568 ATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVSKEELAEIERQVNEVIWQSLK 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T A GA AL G KY VRVV + G +S LCGGTH +T EI L Sbjct: 628 VETIETYIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEY 767 I+ E I +G+RRI A+TGQ+A + L +A +K Q + +V +V + +E Sbjct: 683 KIIKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLSEVAGLVKAPQASQIVAKVSNLQDEL 742 Query: 768 RKLQLIHAKR--KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + Q + KL + D + + V+F++ ++ D+K L+++ D ++K S Sbjct: 743 KAAQKENDALAGKLAASQSDEIFKNVQRAGSVSFIASQVTVPDAKGLRNLADIWKQKELS 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 I++LV EK V ++V LD A +L + A + G GGG+P MA +GG N Sbjct: 803 DILVLVATIGEK---VSLLVASKSLD-VKAGNLVKELAPFV-DGRGGGKPDMAMAGGSNA 857 Query: 883 NKADQAIAGVASFL 896 + + VA L Sbjct: 858 AGIPELLTAVAEKL 871 >gi|237752004|ref|ZP_04582484.1| alanyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430] gi|229376571|gb|EEO26662.1| alanyl-tRNA synthetase [Helicobacter winghamensis ATCC BAA-430] Length = 963 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 338/987 (34%), Positives = 509/987 (51%), Gaps = 145/987 (14%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +LEFF+ GH++ S L+P +D +L+FTN+GMV FK+IFTG+ P + T+ Q Sbjct: 6 IRALYLEFFKSKGHQVYESMPLVP-DDASLLFTNAGMVQFKDIFTGKIPTPKQRRATSAQ 64 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI AW+ +T+ D+ L Sbjct: 65 LCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKKDAIAYAWEFVTEVLGFDKSVL 124 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 Y+T+++ D+EAF+LW K + + +I R+ DNFW M +TGPCGPCSEIF DQG E Sbjct: 125 YVTIHESDDEAFELWCK--HIDSSRIKRMGDKDNFWQMGDTGPCGPCSEIFVDQGAEFFN 182 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+A +L+ K +N+ Sbjct: 183 GEEDYFGGDGDRFLEIWNLVFMQYERSADGSLKPLPKPSIDTGMGLERVAALLEGKRSNF 242 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D +F LI E ++ Y + + RVI DH R+ +FL+A G+ EGRGYVLRRI Sbjct: 243 DSSIFMPLIHKVESLSKQTYVYESGASFRVIADHARAVAFLLAQGVNFDKEGRGYVLRRI 302 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRA+ + LLG + + ++ +C MG Y L + K ++E ++E+ERF +T++ Sbjct: 303 LRRAVRHGYLLGLRKAFLYEVVGVVCDTMGGHYGYLKERKNAVQEQCKAEEERFFETIES 362 Query: 365 GLVLLDGVLSHL------------------------------------GKDEILN----- 383 G+ L + + L G D N Sbjct: 363 GMALFNKEIQTLKAKTNTKAFGLNNDNAEAVEMRNCGFQGGDEGSYLEGNDRASNAESAI 422 Query: 384 ---------GDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434 G+VAFKLYDT+G PLD+ QD+L GL +D+ SF + ++EQ+ R++AH Sbjct: 423 HRSNATRFSGEVAFKLYDTYGFPLDLTQDMLRELGL-DVDMQSFEKCMQEQKDRSKAHWK 481 Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494 G G + + +L ++G F+GY+ + V S + A Sbjct: 482 GSGDSAKDGDFNALLSEFGENAFVGYENV-----------------------SVESKILA 518 Query: 495 IVQQG-EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-------------- 539 ++ + VE +GQ+ V+ + TPFY E+GG +GD G +G + Sbjct: 519 LLDSSFKRVESLGAGQEGWVMLESTPFYPESGGPVGDKGFLLGHSVLSDKSGGASYCSLQ 578 Query: 540 -RLQITDVQKKAEGIFVHHAIVERGILRTEMS-----LVLTIDYQNRRQLSINH-SATHL 592 L ++ Q F ++ + + + S + +D Q L+++ AT + Sbjct: 579 RTLSVSHSQDLHNPDFSSQSLECQDSHKVDSSSPQNIVAKVLDTQKYFGLNLSKVVATSM 638 Query: 593 L-------------------HH--------ALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 L HH AL ILGSH++Q GS + + LRFD +H K Sbjct: 639 LKAGDLVKAQVDSSRFEIAKHHSATHLLHYALRQILGSHIAQAGSLVETNRLRFDFSHPK 698 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685 + + EL+ IE VN IA++ P V M +A A GA AL G KY + VRV+S Sbjct: 699 ALNTDELEQIEALVNSKIAESSPQVCETMGITEAKAKGAMALFGEKYGENVRVISFG--- 755 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 S LCGG H+ +T EI YIV ESS+ +G+RRIEA+ G+ A + E +K Sbjct: 756 ---DSIELCGGIHIQNTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYHYGKNALESIKQA 812 Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805 LK +++ + ++ E+ ++L+ K + L + V ++ + D Sbjct: 813 KEALKAQ--DIIQGIFKLKEQIKELK--EKASKSSTGAKTLESKMLNGVKLIALKLENTD 868 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-TEDLLDRFNAVDLARLSAKVLG 864 +KE K ++D + + + I+L+ E V I + + + A + A++L Sbjct: 869 TKEAKELVDNAKNENEKVAILLI---TESSGKVTITAGVKGVESKLKAGAWVKQVAQIL- 924 Query: 865 GGGGGGRPHMAQSGGP--NGNKADQAI 889 GG GGGR A +GG + NK +A+ Sbjct: 925 GGNGGGRDDFATAGGKITDSNKIKEAL 951 >gi|323436121|ref|ZP_01050628.2| Alanyl-tRNA synthetase [Dokdonia donghaensis MED134] gi|321496436|gb|EAQ38546.2| Alanyl-tRNA synthetase [Dokdonia donghaensis MED134] Length = 870 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 348/915 (38%), Positives = 492/915 (53%), Gaps = 76/915 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FLEFF+ H ++ S+ ++ +DPTLMFTN+GMVPFK F G P +T QK Sbjct: 6 VRKQFLEFFKSKNHSIVASAPMVLKDDPTLMFTNAGMVPFKEYFLGNATPKNSRLTDTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG+ HHT FEMLGN+SFG YFKE AI AW+ LT+ +D+ +Y Sbjct: 66 CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAIAWAWEFLTEVVKVDKDSIY 125 Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +++++ DE EA+ +W K + +II DNFW M GPCGPCSEI D Sbjct: 126 VSIFEGDESEGLERDQEAYDIWTK--HIDESRIINGNKKDNFWEMGAQGPCGPCSEIHVD 183 Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + + G + + IEIWNLVFMQ+ + LP +DTGMG ER+ Sbjct: 184 IRSAEEKAAVDGKSLVNMDHPLVIEIWNLVFMQYNRLANGSLTKLPNQHVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMK---YEGNNIVNHRVIVDHLRSSSFLIADGIL 291 VLQ +NYD D+F L++ E +T K E +I RVI DH+R+ SF IADG L Sbjct: 244 MVLQGVQSNYDTDVFTPLMREVETITSSKCGETEETDIA-VRVIADHVRAVSFSIADGQL 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K LI Sbjct: 303 PSNTGAGYVIRRILRRAIRYGFTFLDTKEPFIYKLVSTLVNQMGDAFPELEAQKNLITNV 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +R E+ F +TLD+GL+LLD V+++ D + +GD AF+LYDT+G P+D+ IL + L Sbjct: 363 IREEEASFLRTLDKGLILLDNVIANTSGDTV-SGDKAFELYDTYGFPIDLTALILSEKNL 421 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F AL+EQ+ R+RA + W L+E +FIGYD L S + Sbjct: 422 K-LDEAGFEAALKEQKDRSRA-----ATKVETDDWNILQED-SEEEFIGYDTLEASIKIT 474 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 RK +K G+ ++VF+ TPFY E GGQ+GD Sbjct: 475 RYRKTESKK---------------------------DGELYQLVFNLTPFYPEGGGQVGD 507 Query: 531 TG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLSINHS 588 G G + I D KK + +H A + + R TE + +D + R + + NH+ Sbjct: 508 KGYLETPSGEVVYIIDT-KKENNLIIHLA---KNLPRSTEGTFKAVVDVKQRSRTAANHT 563 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH L ILG+HV Q GS + LRFD +H +TS ELK +ED VN I +NL Sbjct: 564 ATHLLHQGLRKILGTHVEQKGSMVHSRNLRFDFSHFSKVTSEELKEVEDFVNARIRENLS 623 Query: 649 V-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + R + + AI GA AL G KY D VR + S LCGGTHV +TG+I Sbjct: 624 LEEQRGIPYDQAIQEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVKNTGDIWH 677 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I SE ++ +GIRRIEAIT A+ + + E + + LK +Q V + E Sbjct: 678 FKITSEGAVASGIRRIEAITSDAAKDYFTSETEAYNQVKATLKGNQDPVKAITSLLDENA 737 Query: 768 RKLQLIHA--KRKLQLNVEDLS--CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + + A K K Q DL+ I V+F++ + ++D+ +K++ L + + Sbjct: 738 ALKKQVEALIKEKAQNLSGDLAKEFEDIDGVDFLAKKV-DLDAGAIKNLAFKLGEN-KDN 795 Query: 824 IIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + +L G + KA + ++++L+ NA + R K + GGGGG+P A +GG N Sbjct: 796 VFLLFGTEQNGKALLSCYISKELVASKNLNAGTVVRELGKHI-QGGGGGQPFFATAGGKN 854 Query: 882 GNKADQAIAGVASFL 896 D AIA V ++L Sbjct: 855 PAGIDAAIAEVKNYL 869 >gi|297380421|gb|ADI35308.1| alanyl-tRNA synthetase [Helicobacter pylori v225d] Length = 847 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 316/830 (38%), Positives = 463/830 (55%), Gaps = 64/830 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSVPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L+ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMGEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G+ +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGVC-VDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477 ++EQ R++A G + + ++ Y F+GY+ S F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECSAKALGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 P Q+V V+ ++TPFYAE GG +GD G D Sbjct: 473 DAKP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGTLFKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 DEEAAMVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M Sbjct: 565 REVLGPHVSQAGSLVESKRLRFDFSHPKVLNDEELEKVEDLVNTQIFKHLTSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS + S LCGG HV +TG I IV ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKEA-----SIELCGGIHVENTGLIGGFRIVKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ ++++LK+ + LK +V+ + ++ E + Q Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK--NNDVIAGINKLKESVKNSQ------ 731 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 K ++V DL KI VN + ++ + D KE+ +D L+ K + + M+ Sbjct: 732 KAPVSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMV 777 >gi|195977801|ref|YP_002123045.1| alanyl-tRNA synthetase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974506|gb|ACG62032.1| alanyl-tRNA synthetase AlaS [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 872 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 342/918 (37%), Positives = 508/918 (55%), Gaps = 78/918 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FD + Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++++ W + G+ +I + +NFW + GP GP +EIFFD+GE Sbjct: 123 EKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIFFDRGEA 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 YDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIKEVEKLSGHTYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + IE+ ++ Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFIEKIIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G LD +L+ L G+D L+G FKLYDT+G P+++ +++ G Sbjct: 358 REEETFARTIDAGSGHLDQLLAQLKAKGQDR-LDGKDIFKLYDTYGFPVELTEELAEDAG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F A++EQ+ RARA ++ GS G + + E S+F Sbjct: 417 YK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQNETLAGITEP--------------SEF 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + E T V+S + I+ E E GQ + +VFDQTPFYAE GGQ+ Sbjct: 462 LYE-------------TETVASRLSVIIVDNERSEMVSEGQAL-LVFDQTPFYAEMGGQV 507 Query: 529 GDTGCA---IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D G GD + ++ DVQK G +H V L L ID++ R + Sbjct: 508 ADHGVIKNDKGDPV-ARVIDVQKAPNGQPLHTVEV-LASLALNTVYTLAIDHKRRYAVEK 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL I+G H +Q GS LRFD TH + +T+ EL+ IE+ VN+ I + Sbjct: 566 NHTATHLLHAALHKIIGEHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIWK 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 L + T + E A A GA AL G KY VRVV + G +S LCGGTH+S++ EI Sbjct: 626 ALAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSEI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 L I+ E I +G RRI A+TGQ+A Q++ LK +A LKV Q + +V + Sbjct: 681 GLFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDTLKEIAHTLKVPQIEQLPSKVVSLS 740 Query: 765 EEYRKLQ---LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQK 818 E+ R LQ ++ D+ K+ + N + +I SEV D+ L++ D ++ Sbjct: 741 EQIRDLQKEIAELKEKAAAAQAGDV-FKKVQEANDLRYIASEVSVSDAGALRTFADNWKQ 799 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K S +++L S +K +VL+ + R +A +L + A ++ G GGG+P MA +G Sbjct: 800 KDYSDVLVLAA-SIGEKVNVLVASKD---KRAHAGNLIKALAPIV-SGRGGGKPDMAMAG 854 Query: 879 GPNGNKADQAIAGVASFL 896 G + +K + +A V L Sbjct: 855 GSDASKLSELLAAVPEHL 872 >gi|261366901|ref|ZP_05979784.1| alanine--tRNA ligase [Subdoligranulum variabile DSM 15176] gi|282571016|gb|EFB76551.1| alanine--tRNA ligase [Subdoligranulum variabile DSM 15176] Length = 886 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 325/844 (38%), Positives = 470/844 (55%), Gaps = 49/844 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + ++ +R +L FF+ GH L S L+P +DP+L+ NSGM P K F GQE+P V Sbjct: 4 TGLNELREKYLHFFETKGHLRLGSFPLVPKDDPSLLLINSGMAPMKKWFLGQEEPPRHRV 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R D++ VG T RH TFFEMLGNFSF YFKE I AW+ LTKE ++ Sbjct: 64 TTCQKCIRT----PDIERVGITARHGTFFEMLGNFSFQDYFKEEVIPWAWEFLTKELEIP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +LYI+VY +D+EA+ +W K G+ D ++R DNFW +GPCGPCSEI++D+G Sbjct: 120 ADKLYISVYLDDDEAYDIWTKKVGIPEDHMVRFGKEDNFWEHG-SGPCGPCSEIYYDRGP 178 Query: 182 CIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P + +RY+EIWNLVF QF+ K LP+ +IDTGMGLER+A V+Q+ Sbjct: 179 EHGCGKPTCKVGCDCDRYMEIWNLVFSQFDSDGKGHYERLPRPNIDTGMGLERLACVMQD 238 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N +++D ++ E+++G Y + ++ RVI DH+RS+ F+++DGILP+NEGR Sbjct: 239 VGNLFEVDTVASVLHHVERISGKHYGDSEKDDISIRVITDHIRSTVFMVSDGILPSNEGR 298 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RRA + R+LG P + L+ + + YPEL + + I++ + +E+ER Sbjct: 299 GYVLRRLLRRAARHGRMLGIDRPFLTELVDTVIESSEAGYPELREHESYIKKVVGTEEER 358 Query: 358 FGKTLDRGLVLLDGVLSH--LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 FG+T+D GL +L+ ++ + +L+G FKL DT G PLD+ ++I G +D Sbjct: 359 FGRTIDAGLNILNNMIDERKAAGETVLSGSEVFKLNDTFGFPLDLTKEIAAEAGFT-VDE 417 Query: 416 ISFNQALEEQRSRARAHSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 +F+ + +QR RARA L SG + ++ L + TQF GY+ L E K Sbjct: 418 EAFHAEMTKQRERARAERLAKDISGWSADLFGELAAE--PTQFDGYETLH------ETAK 469 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V +L + + A + GE S + V VV D+TPFYAE GGQ+ D G Sbjct: 470 VQALSDGEELADAI-----ATDEAGE------SKEGVLVVLDRTPFYAEMGGQVADYGYI 518 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 +L++T V+K +G FVH + G ++ + +D R + NH+ATHLL Sbjct: 519 ASGDAKLKVTQVKKTPKGYFVHTCELLDGTIKVGDEVTAFVDEARRMAICRNHTATHLLQ 578 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS FD TH +T EL +E VN+ I +LPVV + + Sbjct: 579 KALREVLGEHVHQAGSYQDDKITHFDFTHFSAVTPEELTEVERRVNEKIFASLPVVIQNL 638 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 E+A GA AL G KY VRVV D G S+ CGGTHV +T +I I+SES Sbjct: 639 PIEEAKKMGAMALFGEKYGSVVRVV-----DAGGWSTEFCGGTHVQNTSQIGCFKILSES 693 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN----VVGRVEEIWEEYRKL 770 S+ AGIRRIEA TG L DE+ LA + N V R E + E ++ Sbjct: 694 SVAAGIRRIEATTGFGVLRLL---DERTDVLAKTAAALKANNLKDVADRAEAMAAELKET 750 Query: 771 --QLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGII 825 QL K ++ D ADV+ +S ++ + L+ ++D ++ K + + Sbjct: 751 NKQLDGLKAEMAAAKVDGLFENAADVDGVRIISAYLTGTGADTLREMVDKVRDKAPNAVT 810 Query: 826 MLVG 829 +LVG Sbjct: 811 VLVG 814 >gi|295132657|ref|YP_003583333.1| alanyl-tRNA synthetase [Zunongwangia profunda SM-A87] gi|294980672|gb|ADF51137.1| alanyl-tRNA synthetase [Zunongwangia profunda SM-A87] Length = 869 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 339/917 (36%), Positives = 508/917 (55%), Gaps = 79/917 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +FLEFFQ H ++PS+ ++ +DP+LMFTN+GMV FK F G P VT QK Sbjct: 6 IRKSFLEFFQGKSHSIVPSAPMVLKDDPSLMFTNAGMVQFKEFFLGNSVPKNTRVTDSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT +F +D+ LY Sbjct: 66 CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAINWAWELLTHKFKIDKDSLY 125 Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++V++ D EA ++WKKI + D+II DNFW M + GPCGPCSEI D Sbjct: 126 VSVFEGSEEDGVGLDTEALEIWKKI--VPEDRIIYGNKKDNFWEMGDQGPCGPCSEIHVD 183 Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + + G + + + +EIWNLVFMQF ++ LP IDTGMG ER+ Sbjct: 184 IRSPEEKAEKPGKELVNADHPQVVEIWNLVFMQFNRKADGSLEELPAKHIDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291 V+Q K +NYD D+F LI E++T Y E NI RVI DH+R+ +F IADG L Sbjct: 244 MVMQGKQSNYDTDVFTPLITEIEKITNSSYGTSEETNIA-IRVIADHVRAVAFSIADGQL 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RRA+ Y L EP + L+ ++MG A+PEL++ + LIE Sbjct: 303 PSNTGAGYVIRRILRRAIRYGFTFLNTKEPFIYKLVDCTKSQMGEAFPELVKQQQLIENV 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ F +TL++GLV+L+ +++ KD+ ++G AF+LYDT G P+D+ IL +G Sbjct: 363 IKEEELSFLRTLEQGLVMLENIVTQ-SKDKEISGVKAFELYDTFGFPIDLTALILKEKGY 421 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 + ++I F L++Q+ R+RA + + SG E+I + F+GYD L + Sbjct: 422 S-LNIAEFEAELKKQKERSRA-ATQVSSGDWEEI-----NEVDEDAFVGYDQLETQVKIA 474 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + RKV +K G ++VF +TPFY E GGQ+GD Sbjct: 475 KYRKVETKK---------------------------QGTLYQIVFTKTPFYPEGGGQVGD 507 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G ++ I D +K++ I +H A ++ S +D R + + NH+AT Sbjct: 508 KGYLTSGEEKISIIDTKKESNQI-IHFA--KKLPQNISGSFTAVVDASARTKTAANHTAT 564 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV- 649 HLLH AL ILG+HV Q GS + P+ +RFD +H ++S E++ +E VND I + L + Sbjct: 565 HLLHQALRHILGTHVEQKGSMVQPNYMRFDFSHFSKLSSEEIEKVEQFVNDRIQEGLQLE 624 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 R + + A+ GA AL G KY D VR + S LCGGTHV +T +I Sbjct: 625 EQRNIAYQHALDQGAIALFGEKYGDSVRAIRFG------ESMELCGGTHVKNTADIWYFK 678 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I ES++ +GIRRIEAITG + + Q E L+ + LK ++ + V + + +E Sbjct: 679 ITGESAVASGIRRIEAITGDAVKEYFTKQTELLEEVQGLLKNAK-DPVKAISGLQDENAD 737 Query: 770 LQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDALQKKIQS 822 L+ L+ K K N++ ++I ++N + + +V D+ +K + L +I Sbjct: 738 LKKQVEALLKDKTK---NLKSEIKNEIQEINGIQFLAKKVDLDAGGIKDLAFQLGGEIDD 794 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + +L G ++ KA + ++++L++ NA + R K + GGGGG+P A +GG Sbjct: 795 -LFLLFGTEQKGKALLSCYISKELVETKDLNAGTIVRELGKYI-QGGGGGQPFFATAGGK 852 Query: 881 NGNKADQAIAGVASFLK 897 N +A+ +++ Sbjct: 853 NPAGIPEALKEAKKYIE 869 >gi|15675313|ref|NP_269487.1| alanyl-tRNA synthetase [Streptococcus pyogenes M1 GAS] gi|71910945|ref|YP_282495.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS5005] gi|20532260|sp|Q99Z57|SYA_STRP1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|13622492|gb|AAK34208.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes M1 GAS] gi|71853727|gb|AAZ51750.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS5005] Length = 872 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 334/921 (36%), Positives = 505/921 (54%), Gaps = 74/921 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ +A+ K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVASFL 896 +GG + +K + +A VA + Sbjct: 852 MAGGSDASKIAELLAAVAEIV 872 >gi|188589293|ref|YP_001920519.1| alanyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43] gi|251779892|ref|ZP_04822812.1| alanine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|205830029|sp|B2V3W2|SYA_CLOBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|188499574|gb|ACD52710.1| alanyl-tRNA synthetase [Clostridium botulinum E3 str. Alaska E43] gi|243084207|gb|EES50097.1| alanine--tRNA ligase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 879 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 321/908 (35%), Positives = 511/908 (56%), Gaps = 56/908 (6%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + + +R +L+FF+ H L S SL+P ND +L+ N+GM P K FTG ++P + Sbjct: 3 FTKTNDLRDAYLKFFESKDHLKLESFSLVPQNDKSLLLINAGMAPLKPYFTGLQEPPKKR 62 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TT QKCVR G D+DNVG T+RH TFFEMLGNFSFG YFK+ I AW+ LT +L Sbjct: 63 ITTCQKCVRTG----DIDNVGITSRHGTFFEMLGNFSFGDYFKKEIIPWAWEFLTGVLEL 118 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 + +LY+T+Y +D+EA++ W ++ + I R+ DNFW GPCGPC+EI F + Sbjct: 119 PKEKLYVTIYLDDDEAYEYWTTLTDVDKTHIFRLGKEDNFWEHG-AGPCGPCTEIHFSRT 177 Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 + +P E + ++ IE+WNLVF QF+ K L +IDTGMGLER+A V+Q Sbjct: 178 DEVPTNSEKFVELSDEDKIIEVWNLVFTQFDGDGKGNYEKLASTNIDTGMGLERLAVVMQ 237 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI-VNHRVIVDHLRSSSFLIADGILPANEG 296 K + ++ID +++++ + +KY E N I V+ R+I DH+RS +F+I+D I+P+NEG Sbjct: 238 NKNSIFEIDTLENILKEVGNLANVKYGEDNKIDVSLRIITDHIRSITFMISDDIMPSNEG 297 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + + LG + + +L + + GSAY +L K I++ ++ E++ Sbjct: 298 RGYVLRRLLRRAARHGKTLGIKDAFLCNLCDVVIRDCGSAYSDLEAKKDYIKKVIKIEED 357 Query: 357 RFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F +TLD G+ +L+ ++S L +++L G FKLYDT G P+++ ++IL L+ +D Sbjct: 358 KFRETLDSGMEILNNLISELKENNEKVLKGADGFKLYDTFGFPMELTKEILEDEDLS-LD 416 Query: 415 IISFNQALEEQRSRARA-----HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 F++ ++EQR RAR+ + +G T + I ++ T F GY+ Sbjct: 417 EDGFHKEMKEQRERARSARKTSNYMGTDVKTLDVISGEIE-----TTFDGYE-------- 463 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + + VK +V + + G VV D TPFYAE GGQ+G Sbjct: 464 ---------------NDSLIAEVKTLVNGEDFTNSIIEGNNAVVVTDVTPFYAEMGGQIG 508 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG D + ++ D +K G +H G L+ + L +D R + NH+A Sbjct: 509 DTGTIYNDNFKGKVLDTKKNIGGKIIHFVEAISGELKVGDKVKLEVDNARRENIKRNHTA 568 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL +LGSHV Q GS ++ D LRFD +H + + EL +E VN+ I PV Sbjct: 569 THLLDAALVKVLGSHVHQAGSYVSADRLRFDFSHFEGVKEEELLKVEQLVNEAIMSVTPV 628 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T M+ ++A SGA + KY ++VRVV G +S LCGGTH+ +TG+I L Sbjct: 629 NTTEMDLQEAKNSGAVGIFDDKYAEKVRVVC-----AGEYSKELCGGTHIDNTGKIGLFK 683 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE--IWEEY 767 I+SE+ I AG RRIEA+TG A + + E LK ++ LK S+ + ++++ + Sbjct: 684 IISENGIAAGTRRIEAVTGIEAYKWVNEKAELLKHISGKLKCSEKEITIKLDQQSKEIKE 743 Query: 768 RKLQLIHAKRKL-QLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 ++ ++ + K K + + D+ S + +N +++ +++VD + L+ + + ++ K+ + + Sbjct: 744 KEKEITNLKSKFASMEINDIINSVKDVKGINVVTYALTDVDGEALRGLCEKVRDKVNNSL 803 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +L S + K + + ++ + + A + GGGGGGRP MAQ+GG K Sbjct: 804 TLLTS-SIDGKVVICAMADKEAVSKGAHCGKVIKEAATILGGGGGGRPDMAQAGGKLPEK 862 Query: 885 ADQAIAGV 892 A+ V Sbjct: 863 ISDALDSV 870 >gi|71903788|ref|YP_280591.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS6180] gi|83305861|sp|Q48SS4|SYA_STRPM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|71802883|gb|AAX72236.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS6180] Length = 872 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 334/918 (36%), Positives = 504/918 (54%), Gaps = 74/918 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y +G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ +A+ K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVA 893 +GG + +K + +A VA Sbjct: 852 MAGGSDASKIAELLAAVA 869 >gi|209559623|ref|YP_002286095.1| alanyl-tRNA synthetase [Streptococcus pyogenes NZ131] gi|209540824|gb|ACI61400.1| Alanyl-tRNA synthetase [Streptococcus pyogenes NZ131] Length = 872 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 334/918 (36%), Positives = 504/918 (54%), Gaps = 74/918 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ +A+ K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVA 893 +GG + +K + +A VA Sbjct: 852 MAGGSDASKIAELLAAVA 869 >gi|28895717|ref|NP_802067.1| alanyl-tRNA synthetase [Streptococcus pyogenes SSI-1] gi|73919472|sp|Q878X3|SYA_STRP3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28810966|dbj|BAC63900.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes SSI-1] Length = 872 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 334/921 (36%), Positives = 505/921 (54%), Gaps = 74/921 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKDIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ +A+ K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVASFL 896 +GG + +K + +A VA + Sbjct: 852 MAGGSDASKIAELLAAVAEIV 872 >gi|332044324|gb|EGI80518.1| alanyl-tRNA synthetase [Lacinutrix algicola 5H-3-7-4] Length = 871 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 339/917 (36%), Positives = 493/917 (53%), Gaps = 77/917 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+TFL FF+K H ++PS+ ++ +DPTLMF N+GMVPFK F G +P +T QK Sbjct: 6 IRSTFLNFFEKKKHSIVPSAPMVLKDDPTLMFVNAGMVPFKEYFLGNSEPKNTRLTDSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D+ LY Sbjct: 66 CLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKIDKDILY 125 Query: 127 ITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 +TV+ D D EA+ +WK+ +S D+I++ DNFW M E GPCGPCSEI Sbjct: 126 VTVFEGSEDSDKLDMDTEAYDIWKQY--ISEDRILKGNKKDNFWEMGEQGPCGPCSEIHV 183 Query: 178 D----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 D + + G + + + +EIWNLVFMQ+ ++ LP IDTGMG ER+ Sbjct: 184 DIRSAEEKAKVNGKDLVNMDHPQVVEIWNLVFMQYNRKANGSLEGLPNKHIDTGMGFERL 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGIL 291 VLQ +NYD D+F +I+ E +T +Y N + RVI DH+R+ +F IADG L Sbjct: 244 CMVLQNVQSNYDTDVFTPIIREIETITDKEYNKNEKTDIAIRVISDHVRAVAFSIADGQL 303 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K LIE Sbjct: 304 PSNTGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVDVLSDKMGEAFPELKTQKQLIENV 363 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ F +TLD+GL+LLD ++ E+L V F+L DT+G P D+ IL +G Sbjct: 364 IKEEETSFLRTLDQGLLLLDRIIETTKGKEVLGAKV-FELKDTYGFPEDLTDLILREKGY 422 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ++ FN LE+Q+SR R S L S W +L E +FIGYD L + + Sbjct: 423 T-YNVEEFNAELEKQKSRGRESS-ALKSDD----WTTLVED-AEQEFIGYDALEANVKIT 475 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 RKV +K G+ ++VF+ TPFYAE GGQ+GD Sbjct: 476 RYRKVTSKK---------------------------DGEMYQLVFNLTPFYAEGGGQVGD 508 Query: 531 TGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G A GD + + T KK + +H A L V +D + R + NH Sbjct: 509 KGYLEDAHGDVVYILDT---KKENNVIIHFAKNLPKHLNETFKAV--VDAKQRYRTECNH 563 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH L +LG+HV Q GS + LRFD +H +T+ +L+ +ED VN I L Sbjct: 564 TATHLLHQGLREVLGTHVEQKGSAVHSKYLRFDFSHFSKVTNEQLQEVEDFVNRRIDGKL 623 Query: 648 PV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 + R + + AI GA AL G KY D VR + S LCGGTHV +T +I Sbjct: 624 ELEENRNVPMDQAIEDGAMALFGEKYGDTVRTIRFG------QSIELCGGTHVKNTSDIW 677 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---KLKSLASFLKVSQGNVVGRVEEI 763 IVSE ++ +GIRRIEAIT + + ++KSL + K + +V E Sbjct: 678 HFKIVSEGAVASGIRRIEAITSDAVKDFYAENSKVFSEMKSLLNNAKDPKEALVKLQTEN 737 Query: 764 WEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 + ++++ + + L E + + +I V F++ + ++D+ +K V L +K Sbjct: 738 NDLKKQIESLLKDKAKNLKAELENNLTEINGVQFLAEKV-DLDASGIKDVAFDLGQK-HK 795 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 + ++ G KA + ++++L+ NA + R K++ GGGGG+P A +GG Sbjct: 796 NLFLIFGADTGGKALLTCYISKELVAEKGLNAGTVVRELGKLI-QGGGGGQPFFATAGGK 854 Query: 881 NGNKADQAIAGVASFLK 897 N +A+ +++ Sbjct: 855 NPEGIQEALNEAKKYIQ 871 >gi|225870098|ref|YP_002746045.1| alanyl-tRNA synthetase [Streptococcus equi subsp. equi 4047] gi|225699502|emb|CAW93052.1| alanyl-tRNA synthetase [Streptococcus equi subsp. equi 4047] Length = 872 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 341/916 (37%), Positives = 507/916 (55%), Gaps = 74/916 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQIRQMWLDFWKSKGHSIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FD + Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++++ W + G+ +I + +NFW + GP GP +EIFFD+GE Sbjct: 123 EKLYMTYYPDDKDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIFFDRGEA 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 YDPDHIGIRLLEEDIENDRYIEIWNIVLSQFNADPTIPRSEYKELPNKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIKEVEKLSGHTYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + IE+ ++ Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGIHETFLYKLVATVGHIMESYYPEILEKRDFIEKIIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G LD +L+ L G+D L+G FKLYDT+G P+++ +++ G Sbjct: 358 REEETFARTIDAGSGHLDQLLAQLKEKGQDR-LDGKDIFKLYDTYGFPVELTEELAEDAG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 ID F A++EQ+ RARA ++ GS G + + E S+F Sbjct: 417 YK-IDHEGFKAAMKEQQDRARAAAVKGGSMGMQNETLAGITEP--------------SEF 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + E T V+S + I+ E E GQ + +VFDQTPFYAE GGQ+ Sbjct: 462 LYE-------------TETVASRLSVIIVDNERSEMVSEGQAL-LVFDQTPFYAEMGGQV 507 Query: 529 GDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G D L ++ DVQK G +H V L + L ID++ R + N Sbjct: 508 ADHGVIKNDKGDLVARVIDVQKAPNGQPLHTVEV-LASLALDTVYTLAIDHKRRYAVEKN 566 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN+ I + Sbjct: 567 HTATHLLHAALHKVIGEHATQAGSLNEEAFLRFDFTHFEAVTAQELRRIEEEVNEQIWKA 626 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 L + T + E A A GA AL G KY VRVV + G +S LCGGTH+S++ EI Sbjct: 627 LAITTTETDIETAKAMGAMALFGEKYGKTVRVVQI-----GDYSVELCGGTHLSNSSEIG 681 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765 L I+ E I +G RRI A+TGQ+A Q++ LK +A LKV Q + +V + E Sbjct: 682 LFKIIKEEGIGSGTRRIIAVTGQQAFESFRKQEDILKEIAHTLKVPQIEQLPSKVVSLSE 741 Query: 766 EYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820 + R LQ + K K K+ + N + +I SEV D+ L++ D +++ Sbjct: 742 QLRDLQKEMAELKEKAAAAQAGDVFKKVQEANGLRYIASEVSVSDAGVLRTFADNWKQRD 801 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++L S +K +VL+ + R +A +L + A ++ G GGG+P MA +GG Sbjct: 802 YSDVLVLAA-SIGEKVNVLVASKD---KRAHAGNLIKALAPIV-SGRGGGKPDMAMAGGS 856 Query: 881 NGNKADQAIAGVASFL 896 + +K + +A V L Sbjct: 857 DASKLSELLAAVPEHL 872 >gi|77410746|ref|ZP_00787105.1| alanyl-tRNA synthetase [Streptococcus agalactiae CJB111] gi|77163282|gb|EAO74234.1| alanyl-tRNA synthetase [Streptococcus agalactiae CJB111] Length = 872 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 334/926 (36%), Positives = 505/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLTQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 + G ID F A++EQ+ RARA S+G+ + T I + YGA Sbjct: 411 LAEDAGYK-IDHEGFKAAMKEQQDRARAAVVKGGSMGMQNETLAGIVEESRFDYGA---- 465 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 + + S + I+ E E GQ + +VF QT Sbjct: 466 ---------------------------DSLESNLSVIIADNERTEAVSEGQAL-LVFAQT 497 Query: 519 PFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G D ++ DVQK G +H V L + L I+ Sbjct: 498 PFYAEMGGQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEIN 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE Sbjct: 557 KERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I +L + T + E A GA AL G KY VRVV + G +S LCGG Sbjct: 617 QEVNEQIWNDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 TH++++ EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + Sbjct: 672 THLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKD 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELK 810 +V+ + + R LQ + + K + + V F++ + D+ L+ Sbjct: 732 AAAKVQALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG + +K + +A VA L Sbjct: 847 KPDMAMAGGSDASKIAELLAAVAENL 872 >gi|262527561|sp|A4W221|SYA_STRS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 872 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 342/923 (37%), Positives = 511/923 (55%), Gaps = 78/923 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D +++ W + G+ +I + DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+G E I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A + Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG TEP + L+ + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +T+ G + ++ L GK EI D+ FKLYDT+G +++ ++ Sbjct: 352 IEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDI-FKLYDTYGFQVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462 + RG+ +DI F A++EQ+ RARA + GS G + ++ E+ +T G Sbjct: 411 LAEHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETLAAITEE--STFVYGQTA 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L S +S IV + EAVS + +VFDQTPFYA Sbjct: 468 LEAS---------------------LSVIVADNART-----EAVSEGQALLVFDQTPFYA 501 Query: 523 EAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 E GGQ+ D G A GD I + DVQK G +H + I + L I+ + Sbjct: 502 EMGGQVADHGFVKNATGD-IVATVIDVQKAPNGQPLHTVELSASI-SVGQTYTLEIETKR 559 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ + NH+ATHLLH AL I+G H +Q GS D LRFD TH + +T+ EL+ IE+ V Sbjct: 560 RKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEV 619 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ I +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV Sbjct: 620 NEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHV 674 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 +T EI + I+ E I +G RRI A+TG+ A Q++ LK +A+ +K Q V Sbjct: 675 GNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPN 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVM 813 +VE + ++ R LQ +A K + + D N + +I S+V D+ L++ Sbjct: 735 KVESLAQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFA 794 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D ++K S +++LV +K ++ + D+ +A +L ++ A ++ G GGG+P Sbjct: 795 DNWKQKDYSDVLVLVAAIGDKVNVLVASKSSDV----HAGNLIKVLAPIV-AGRGGGKPD 849 Query: 874 MAQSGGPNGNKADQAIAGVASFL 896 MA +GG + + + VA+ L Sbjct: 850 MAMAGGSDASAIQTLLNSVANNL 872 >gi|87123480|ref|ZP_01079331.1| Alanyl-tRNA synthetase:DHHA1 domain [Synechococcus sp. RS9917] gi|86169200|gb|EAQ70456.1| Alanyl-tRNA synthetase:DHHA1 domain [Synechococcus sp. RS9917] Length = 911 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 350/899 (38%), Positives = 510/899 (56%), Gaps = 68/899 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL F+++ GH+ + S+SL+P DPT++ T +GM+PFK +F GQ++ T+ QK Sbjct: 39 IREAFLAFYEQRGHQRIASASLVP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRATSSQK 97 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T+ F L + L Sbjct: 98 CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTEVFGLSPKNLV 153 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPG 185 ++V+ ED+E +W+ G++ +IIR+ DNFW+ TGPCGPCSEI++D + E Sbjct: 154 VSVFREDDEGEAIWRDRVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPELGDD 213 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 G+ E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ NNY+ Sbjct: 214 GI--DLEDDSRFIEFYNLVFMQYNRDAEGTLTPLENRNIDTGMGLERMAQILQAVPNNYE 271 Query: 246 IDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DL LI+ + Q+ G+ Y +G + +VI DH R+ + LI DG+ +N GRGY+LR Sbjct: 272 TDLIYPLIETAAQLAGVAYPALDGKGKTSLKVIGDHSRAITQLIGDGVTASNLGRGYILR 331 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RR + + RLLG +P + + A M SAYP+L++ + +I L+ E+ RF +TL Sbjct: 332 RLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLLERREVILAELQREEARFLETL 391 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RG LL VL+ K + ++G AF+LYDT+G PL++ ++I GL +D+ F A+ Sbjct: 392 ERGEKLLADVLA--AKPKQISGAQAFELYDTYGFPLELTEEIAEEHGLT-VDLDGFEAAM 448 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 E QR RA+A ++ + E I + AT F GY+LL Sbjct: 449 EAQRQRAKAAAVSIDLTLQEAI-DQVAADLEATAFRGYELLE------------------ 489 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD----- 537 SS V A+V GE + AV+G V+VV D TPFY E GGQ+GD G GD Sbjct: 490 -----QSSCVVALVVNGEPAQRAVAGDSVQVVLDTTPFYGEGGGQVGDRGVLSGDGPDGH 544 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 G+ + I V + +FVH +ERG+L + +D RR+ NH+ATHLL AL Sbjct: 545 GLIVAIEAVSRN-RSVFVHSGRIERGVLSLGDVVHGQVDRACRRRAQANHTATHLLQAAL 603 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++ + Q GS + D LRFD + +T+AEL+ IE +N I++ + + M E Sbjct: 604 KQVVDPGIGQAGSLVDFDRLRFDFHCPRAVTAAELEQIEALINGWISEAHSLEVQEMAIE 663 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IVSES + Sbjct: 664 TAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVSESGVA 718 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIHA 775 AGIRRIEA+ G ++L +D +K L K +V RV ++ +E + Q L+ A Sbjct: 719 AGIRRIEAVAGPAVLAYLNERDAVVKQLGERFKAQPAEIVDRVVQLADELKASQKALVAA 778 Query: 776 KRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSG-IIMLVGIS 831 + +L L + V +++ +D E L+S L ++ G ++L G+ Sbjct: 779 REELALAKSAALAGQAVAVGAHQLLVARLDGVEGGGLQSAAQGLVDQLGDGAAVVLGGLP 838 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLAR--LSAKVLGG------GGGGGRPHMAQSGGPNG 882 +I+V F ++R + K +GG GGGGGRP++AQ+GG +G Sbjct: 839 DPGDLGKVILVAA-----FGKAVISRGQQAGKFIGGIAKVCGGGGGGRPNLAQAGGRDG 892 >gi|317177983|dbj|BAJ55772.1| alanyl-tRNA synthetase [Helicobacter pylori F16] Length = 847 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 319/837 (38%), Positives = 466/837 (55%), Gaps = 64/837 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FFQ GH + PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFQNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCG CSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGSCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L + K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLHKVVGVVCEQFSNTHAYLKEFKEMVLKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G+ +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGVR-VDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477 ++EQ R++A G + + ++ Y F+GY+ S F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECSAKALGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + P Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 473 EANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGVLLKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 I K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 NEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LGSHVSQ GS + LRFD +H K + EL+ +ED VN I ++L M Sbjct: 565 REVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS + S LCGG HV +TG I IV ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVSFKET-----SIELCGGIHVENTGLIGGFRIVKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ + ++LK+ LK +V+ + ++ E + Q Sbjct: 680 SGVRRIEAVCGKAFYQLAKEESKELKNAKIALK--NNDVMAGINKLKESVKNSQ------ 731 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K ++V DL KI VN + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 732 KAPVSV-DLPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784 >gi|223933644|ref|ZP_03625622.1| alanyl-tRNA synthetase [Streptococcus suis 89/1591] gi|223897674|gb|EEF64057.1| alanyl-tRNA synthetase [Streptococcus suis 89/1591] Length = 872 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 342/923 (37%), Positives = 510/923 (55%), Gaps = 78/923 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D +++ W + G+ +I + DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+G E I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGTDFDPENIDIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A + Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG TEP + L+ + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +T+ G + ++ L GK EI D+ FKLYDT+G +++ ++ Sbjct: 352 IEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDI-FKLYDTYGFQVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462 + RG+ +DI F A++EQ+ RARA + GS G + ++ E+ +T G Sbjct: 411 LAEHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETLAAITEE--STFVYGQTA 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L S +S IV + EAVS + +VFDQTPFYA Sbjct: 468 LEAS---------------------LSVIVADNART-----EAVSEGQALLVFDQTPFYA 501 Query: 523 EAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 E GGQ+ D G A GD I + DVQK G +H + I + L I+ + Sbjct: 502 EMGGQVADHGFVKNATGD-IVATVIDVQKAPNGQPLHTVELSASI-SVGQTYTLEIETKR 559 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ + NH+ATHLLH AL I+G H +Q GS D LRFD TH + +T+ EL+ IE+ V Sbjct: 560 RKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEV 619 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ I +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV Sbjct: 620 NEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHV 674 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 +T EI + I+ E I +G RRI A+TG+ A Q++ LK +A+ +K Q V Sbjct: 675 GNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPN 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVM 813 +VE + ++ R LQ +A K + + D N + +I S+V D+ L++ Sbjct: 735 KVESLAQQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFA 794 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D ++K S +++LV +K ++ + D+ +A +L ++ A ++ G GGG+P Sbjct: 795 DNWKQKDYSDVLVLVAAIGDKVNVLVASKSSDV----HAGNLIKVLAPIV-AGRGGGKPD 849 Query: 874 MAQSGGPNGNKADQAIAGVASFL 896 MA +GG + + + VA L Sbjct: 850 MAMAGGSDSSAIQTLLNSVAENL 872 >gi|116071953|ref|ZP_01469221.1| alanyl-tRNA synthetase [Synechococcus sp. BL107] gi|116065576|gb|EAU71334.1| alanyl-tRNA synthetase [Synechococcus sp. BL107] Length = 887 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 332/891 (37%), Positives = 506/891 (56%), Gaps = 53/891 (5%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL F+Q+ GH+++ S+SLIP DPT++ T +GM+PFK +F GQ++ T+ Sbjct: 18 AEIRAAFLCFYQERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRATSS 76 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ F +D + Sbjct: 77 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVFGIDPKH 132 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECI 183 L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + E Sbjct: 133 LVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPELG 192 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G+ E+ +R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ+ NN Sbjct: 193 DEGI--DLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPNN 250 Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL LIQA+ G+ Y + + +VI DH R+ + LI DG+ +N GRGY+ Sbjct: 251 YETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYI 310 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RR + + RL+G P ++ + A + A+P +++ + +I L+ E+ RF + Sbjct: 311 LRRLLRRVVRHGRLIGINRPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFLE 370 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG LL VL K + ++G AF+LYDT+G PL++ Q+I +GL +D+ F + Sbjct: 371 TLERGEKLLSEVLDS--KPKQISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFEE 427 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+E+QR RA+A ++ + T + + AT F GY +L ++P Sbjct: 428 AMEQQRQRAKAAAVSIDL-TLQDAIDQVVATQNATAFQGYQVL--------------EQP 472 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 S V+A+V GE A +G V++V + TPFY E GGQ+GD G G + Sbjct: 473 ---------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADVI 523 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + I V + + +FVH +ERG L ++ +D RR+ NH+ATHLL AL + Sbjct: 524 VAIESVSRSRD-VFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQV 582 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 + + Q GS + D LRFD + +T+ +L+ IE +N IA+ ++ M + A Sbjct: 583 VDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLEQIETLINGWIAEAHGLLVEEMAIDQAK 642 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IV ES + AGI Sbjct: 643 AAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVGESGVAAGI 697 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRK 778 RRIEA+ G +L ++ +K L K G +V RV + +E + LI A+ + Sbjct: 698 RRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQAE 757 Query: 779 LQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG----IS 831 L + K I + + VD L+ +L ++ G +++G S Sbjct: 758 LAVAKSAALATKAVAIGSFQLLVERLDGVDGAGLQGAAQSLAAQLGDGAAVVLGGLPDPS 817 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + K ++ +D++ + L GGGGGGRP++AQ+GG +G Sbjct: 818 DQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGGGGRPNLAQAGGRDG 868 >gi|324993321|gb|EGC25241.1| alanine--tRNA ligase [Streptococcus sanguinis SK405] Length = 872 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 344/931 (36%), Positives = 511/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + AIV VE SG ++F +TP Sbjct: 459 ------SVFNYEKEELTAE-------------LLAIVADDAAVESVESGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G I DG + Q+TDVQK G +H V L S L ID Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LDPLALGQSYKLEID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKKMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI + IV E I +G RRI A+T + A + ++E LK++A+ LK Q Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ +A+ K + NV++ + H +F++ +S D Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K + T+D+ +A +L + A ++ Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +A VA L Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|288918208|ref|ZP_06412563.1| alanyl-tRNA synthetase [Frankia sp. EUN1f] gi|288350378|gb|EFC84600.1| alanyl-tRNA synthetase [Frankia sp. EUN1f] Length = 880 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 305/772 (39%), Positives = 435/772 (56%), Gaps = 47/772 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL F + GH ++PS+SL+ DPTL+ N+GMVPFK F G + T Sbjct: 2 DTAEIRRRFLNHFSERGHTVVPSASLV-AQDPTLLLVNAGMVPFKPYFVGDLTAPWSRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 +VQKCVR D++NVGRT RH +FF+M GNFSFG YFK AI A++L+T+ + + Sbjct: 61 SVQKCVRT----VDIENVGRTARHASFFQMCGNFSFGDYFKAEAIPFAFELVTEGYGFNP 116 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-E 181 L+ TVY +D+EA +W+ + L A++I R DNFWSM GPCGPCSEI+FD+G E Sbjct: 117 DDLWATVYLDDDEAESIWRTL--LPAERIQRRGKKDNFWSMGVPGPCGPCSEIYFDRGPE 174 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLERMATV 236 G P + E+ RY+EIWNLVFMQ+ + E LP +IDTGMGLERMAT+ Sbjct: 175 YGRDGGPEADED--RYLEIWNLVFMQYARGEGSEYGYEIVGDLPARNIDTGMGLERMATI 232 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294 LQ N Y+ID+ + ++ A+ ++TG +Y + V RV+ DH R+++ LI+DG+ P+N Sbjct: 233 LQGVENLYEIDISRPVLDAAGRLTGARYGADPAADVRLRVVADHTRTAAMLISDGVSPSN 292 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 EGRGYVLRR++RRA+ ARLLG EP+M LL + MG YPEL+ I +E Sbjct: 293 EGRGYVLRRMLRRAVRDARLLGAREPVMAELLAEVRQAMGPIYPELVDQAEAITAVAVAE 352 Query: 355 DERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 + F +TL G L D ++ L+G+ AF+L+DT+G P+D+ D+ GL Sbjct: 353 ETAFLETLRTGTTLFDTAVTQARSSGSAQLSGESAFRLHDTYGFPIDLTIDMAADAGLT- 411 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF-SLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + +E QR A+A G + F + G T F GY ++ +E Sbjct: 412 VDEAGFRRLMERQRQAAKADRASRRIGNLDLSAFRPILAASGPTTFTGY-----TELTRE 466 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 +GV IV + G G++V +V D TPFYAE GGQ D Sbjct: 467 --------------SGVVGIVG--IGDGSSRVAVGEGEEVGIVLDTTPFYAEGGGQEADL 510 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G DG ++ DVQ+ + +H V RG LR + + +D + RR +S +H+ATH Sbjct: 511 GVIRFDGGECEVLDVQRPVADLVMHRVKVLRGELRVGADVAVEVDVERRRAVSRSHTATH 570 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H A LG +Q GS +P LRFD + + L +ED VN++ ++L V Sbjct: 571 LVHTAFRRALGESATQAGSLNSPGRLRFDFHALGAVPDSVLADVEDEVNEVALRDLEVRW 630 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + + +A GA AL G KY D+VRVV V G ++ LCGGTHVSS+ ++ + ++ Sbjct: 631 YVTTQAEARRLGAMALFGEKYGDQVRVVDV-----GDYARELCGGTHVSSSAQLGAIKLL 685 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 SESSI AG RR+EA+ G A L + + L++ LK + RV +I Sbjct: 686 SESSISAGTRRVEALVGIDAFRFLAREHVLVSQLSTALKARPDELTDRVADI 737 >gi|77413130|ref|ZP_00789330.1| alanyl-tRNA synthetase [Streptococcus agalactiae 515] gi|77160831|gb|EAO71942.1| alanyl-tRNA synthetase [Streptococcus agalactiae 515] Length = 872 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 333/921 (36%), Positives = 502/921 (54%), Gaps = 74/921 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWXIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDNIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNXNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ + + K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVASFL 896 +GG + +K + +A VA L Sbjct: 852 MAGGSDASKIAELLAAVAENL 872 >gi|89890332|ref|ZP_01201842.1| alanyl-tRNA synthetase [Flavobacteria bacterium BBFL7] gi|89517247|gb|EAS19904.1| alanyl-tRNA synthetase [Flavobacteria bacterium BBFL7] Length = 873 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 338/907 (37%), Positives = 497/907 (54%), Gaps = 86/907 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR TFL+F++ HE++ S+ ++ NDPTLMF N+GM PFK F G Y + QK Sbjct: 6 IRQTFLDFYKSKQHEVVASAPMVIKNDPTLMFVNAGMNPFKEYFLGINDSKYSRIADSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D+ LY Sbjct: 66 CLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTEVYKIDKDCLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T++ + D EA+ WK++ ++ D+I+ DNFW M + GPCGPCSEI D Sbjct: 126 VTIFEGDTSENLERDTEAYDYWKEL--IAEDRILNGNKKDNFWEMGDQGPCGPCSEIHVD 183 Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + + G + + + +EIWNLVFMQ+++ LP +DTGMG ER+A Sbjct: 184 IRTAEEKAAVDGASLVNADHPQVVEIWNLVFMQYKRMADGSLKNLPAQHVDTGMGFERLA 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291 V+Q +NYD D+F LI+ E +TG Y E +I RVI DH+R+ SF IADG L Sbjct: 244 MVMQGVQSNYDTDVFTPLIREIETITGHAYGKTEQEDIA-IRVIADHVRAVSFSIADGQL 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K LI Sbjct: 303 PSNNGAGYVIRRILRRAIRYGFTYLNKKEPFIYMLVNTLSKQMGDAFPELKSQKNLILNV 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++ E++ F + LD+GLVLLD +++ + I++G+ AF+LYDT+G P+D+ IL + Sbjct: 363 IKEEEQSFLRALDQGLVLLDSMITAAKSNSQNIIDGNKAFELYDTYGFPIDLTALILREK 422 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G+ +D F +A+ Q+ R+RA S TT W L+ +FIGYD L Sbjct: 423 GME-LDEAGFEKAMAAQKQRSRA-----ASETTTSDWTELRSD-DTQEFIGYDKLEADVR 475 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + RKV +K G ++VF+ TPFY E+GGQ Sbjct: 476 ISRYRKVTTKK---------------------------DGDLYQLVFNMTPFYGESGGQT 508 Query: 529 GDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GD G GD I + T KK G VH + + E S +D R + S Sbjct: 509 GDKGYLESPSGDTIYIIDT---KKENGQTVH--LTKNLPKDLEGSHKAVVDANQRHRTSS 563 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHLLH AL +LG HV Q GS + LRFD +H +T +L+ +E+ VN I + Sbjct: 564 NHTATHLLHQALRKVLGDHVEQKGSMVRSASLRFDFSHFAKVTPEQLQEVENFVNARIRE 623 Query: 646 NLPVVTRIMNRED-AIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 LP+ N D A+ GA AL G KY D VR + S LCGGTHV++T + Sbjct: 624 QLPLEENRTNTYDAAVEDGAMALFGEKYGDVVRTIKFG------KSYELCGGTHVANTAD 677 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + I+SE ++ AGIRRIEAI+ + Q + + LK + N + ++ Sbjct: 678 VWHFKIMSEGAVAAGIRRIEAISSDAVKDFFAEQSRHFDEIKTILKSNTKNPADAIAQLQ 737 Query: 765 EEYRKL-----QLIHAKRKLQLNVE-DL--SCHKIADVNFMSHIISEVDSKELKSVMDAL 816 +E L QL+ AK N++ DL S I VNF++ +++D+K +K + + Sbjct: 738 DENAALKKEIEQLLKAKAG---NLKGDLIASAQDINGVNFIA-TQTDLDAKSVKELAFEI 793 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHM 874 ++++ + + +++G S KA++ ++++++L++ NA + R K + GGGGG+ H Sbjct: 794 EREMDN-LFLIIGASNGDKATLTVMISKNLVEEKDLNAGSIVRELGKHI-QGGGGGQAHF 851 Query: 875 AQSGGPN 881 A +GG N Sbjct: 852 ATAGGKN 858 >gi|116670825|ref|YP_831758.1| alanyl-tRNA synthetase [Arthrobacter sp. FB24] gi|205829979|sp|A0JX88|SYA_ARTS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116610934|gb|ABK03658.1| alanyl-tRNA synthetase [Arthrobacter sp. FB24] Length = 892 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 339/930 (36%), Positives = 500/930 (53%), Gaps = 82/930 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I +++FF GH +PS+SL+ +DP+L+FT +GMVPF T +E+ Y T+VQK Sbjct: 6 ITKRWIDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYNRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 C+R G D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT D L Sbjct: 65 CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKFAWELLTTSVDDGGYGLP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L++TVY+ED+EA +LW K +G+ A++I R+ DN+WS + GP GPCSEI++D+G Sbjct: 121 PEKLWVTVYEEDDEAEQLWLKNTGMPAERIQRMGKADNYWSTGQPGPAGPCSEIYYDRGP 180 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLERM 233 + GG P + E RY+EIWNLVFMQ++ N + + LPK +IDTG+G+ER+ Sbjct: 181 SYGVEGG-PIADEN--RYVEIWNLVFMQYQIDNVRSKVDFDITGELPKKNIDTGLGMERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284 A +LQ+ N Y+ D + +I + ++G +Y + V RV+ DH+RS+ Sbjct: 238 AMILQDVENMYETDQVRPVIDKAAALSGKEYTSAESADDPHHTDDVRMRVVADHIRSALM 297 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LIADG+ P+NEGRGYVLRR++RRA+ RLLG + + LLPA M YP + Sbjct: 298 LIADGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEKACLPDLLPASRDAMKGVYPVVETDF 357 Query: 345 LLIEETLRSEDERFGKTLDRGLVLL-DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 I +E++ F +T+ G L D V + L+G AF L+DT+G P+D+ + Sbjct: 358 DRISRIAYAEEKAFLRTIASGTARLEDAVKDSKAAGQPLSGADAFALHDTYGFPIDLTLE 417 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + GL +D F + + EQR RA+A + G + F G T F GY L Sbjct: 418 MAEEAGLK-VDEPEFRKLMLEQRQRAQADAKGKKGSHADLSAFQELLAEGETVFTGYTEL 476 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 G S V+ I+ G V +A +G+++E+V +TPFYAE Sbjct: 477 AGE-----------------------SKVRGILSGGRKVSQASTGEEIELVLAETPFYAE 513 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 AGGQ DTG GDG +++ DVQ+ +G+ VH AIV G + + + +D + R Sbjct: 514 AGGQAADTGLITGDGFVVEVLDVQRPVKGLSVHKAIVREGEIGADSLVQAAVDRERRHSA 573 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 H+ TH++H AL ILG Q GS LRFD + +++A IE+ N I Sbjct: 574 EQAHTGTHIVHAALHQILGPEALQRGSYNKAGYLRFDFAWGEGLSAATRSEIEEVSNLAI 633 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N V T++M +A A GA AL G Y + VRVV ++ G S LCGGTHV++T Sbjct: 634 RNNFQVETKVMALAEAKALGAMALFGENYGNEVRVVEID----GAWSRELCGGTHVANTS 689 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR---- 759 I L ++ + S+ +G RR+EA G A HL + + L LKV G + R Sbjct: 690 LIGSLSLLGDQSVGSGNRRVEAFVGMEAFRHLAAERALVTELTEMLKVPSGLLADRIATT 749 Query: 760 ------VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD-SKELKSV 812 VE+ E RK QL A +L +D A V ++H +V + +L+ + Sbjct: 750 LTKLKTVEKELERLRKEQLTAAAAQLVGTAKD-----AAGVKVIAHDAGQVSGADDLRGL 804 Query: 813 MDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGG 868 L+ ++ S + + G+S ++ V++V T + A L RL+A +L GGGG Sbjct: 805 ALDLRTRLGSEAAAVAVAGVSNDR--PVILVATNEAARAAGVKAGALVRLAAGIL-GGGG 861 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GG+ +AQ GG + K A+ V + + Sbjct: 862 GGKDDVAQGGGTDAAKVPAALTAVVDAITR 891 >gi|113953976|ref|YP_731956.1| alanyl-tRNA synthetase [Synechococcus sp. CC9311] gi|122945499|sp|Q0I6G6|SYA_SYNS3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|113881327|gb|ABI46285.1| alanyl-tRNA synthetase [Synechococcus sp. CC9311] Length = 893 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 341/920 (37%), Positives = 504/920 (54%), Gaps = 73/920 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL F+++ GH+++ S+SLIP DPT++ T +GM+PFK +F GQ+K T+ Sbjct: 18 AEIRAAFLSFYEERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQKRPAPRATSS 76 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T F +D + Sbjct: 77 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTDLFGIDPKH 132 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECI 183 L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D E Sbjct: 133 LVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFNPELG 192 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G+ E+ +R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ+ NN Sbjct: 193 DEGI--DLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGLGLERMAQILQKVPNN 250 Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL LIQA+ + G+ Y + + +VI DH R+ + LI DG+ +N GRGY+ Sbjct: 251 YETDLIFPLIQAAADLAGVDYHQLDDAGQTSLKVIGDHSRAVTQLICDGVSASNLGRGYI 310 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RR + + RLLG +P ++ + A + AYP +I+ + +I L+ E+ RF + Sbjct: 311 LRRLLRRVVRHGRLLGIHQPFLVTMGQASIALLKDAYPSVIERQEVILAELQREESRFLE 370 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG LL VL K + ++G AF+LYDT+G PL++ Q+I GL +D+ F Q Sbjct: 371 TLERGEKLLADVLES--KPKQISGAQAFELYDTYGFPLELTQEIAEEHGL-DVDLAGFEQ 427 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+E+QR RA+A ++ + T + + AT F GYDLL S Sbjct: 428 AMEQQRQRAKAAAVSIDL-TLQDAIDQVAADLNATSFEGYDLLVQS-------------- 472 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 SS V+A++ GE A G V+VV D TPFY E GGQ+GD G +GDG Sbjct: 473 --------SSTVQALLVNGEAAASASDGDVVQVVLDNTPFYGEGGGQVGDRGLLVGDGPD 524 Query: 541 ----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 + + + + G+FVH V+ G L + +D RR+ NH+ATHLL A Sbjct: 525 GNGLIVVIEGVSRNRGVFVHSGRVQLGRLGVGDVVHGQVDRACRRRAQANHTATHLLQAA 584 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L ++ + Q GS + + LRFD + + EL+ IE +N I+ + M Sbjct: 585 LKQVVDEGIGQAGSLVNFERLRFDFHCPRAVKPEELEQIETLINGWISDAQSLEVNEMAI 644 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A A+GA A+ G KY D VRVV V S LCGGTHV +T EI L IVSES + Sbjct: 645 DQAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVGNTAEIGLFKIVSESGV 699 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ--LIH 774 AGIRRIEA+ G ++L ++ +K L K G +V RV + EE + Q L Sbjct: 700 AAGIRRIEAVAGASVLAYLNEREVVVKQLGDRFKAQPGEIVERVVALQEELKNSQKALTA 759 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 A+ +L + + V +++ +D D LQ G++ +G Sbjct: 760 ARSELAVAKSAALAVQAVAVGKHQLLVARLDGVN----GDGLQGAAL-GLLDQLG----D 810 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHMAQSG 878 +V++ D D+ + +A V+ G G RP++AQ+G Sbjct: 811 ATAVVLGGLPDPSDQGKVILVAAFGKAVIATGQQAGKFIGAIAKLCGGGGGGRPNLAQAG 870 Query: 879 GPNGNKADQAIAGVASFLKK 898 G +G D A+ + LKK Sbjct: 871 GRDGAALDAALNTARAELKK 890 >gi|281492315|ref|YP_003354295.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147] gi|281375979|gb|ADA65470.1| Alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis KF147] Length = 872 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 339/915 (37%), Positives = 496/915 (54%), Gaps = 73/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF+ GH + PS SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRLTNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI AW+LLT F+ Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRKEAIAFAWELLTSSEWFEFPA 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LYIT Y D++ + W ++ G+ ++ I DNFW + GP GP +EIFFD+GE Sbjct: 123 EKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDRGEV 178 Query: 183 IPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 GL +E E +RYIEIWN+V QF + E LP+ +IDTGMGLERM Sbjct: 179 YDPEHMGLKLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYPELPQKNIDTGMGLERMV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPA 293 ++Q N+D DLF +I+ E+++G Y ++ ++ +VI DH+RS SF I DG LP Sbjct: 239 CIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + I + + Sbjct: 299 NEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDR 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+E F +T+D G L+D +L +L GKD + D+ F+LYDT+G P+++ +++ G Sbjct: 359 EEETFNRTIDAGQKLIDELLVNLKSEGKDRLEGADI-FRLYDTYGFPVELTEELAEDEGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F A++ Q+ RARA + GS GA + S+F+ Sbjct: 418 K-IDHEGFKVAMKAQQERARAAVVKGGS-------------MGAQNETLSSIEVESEFLY 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 ED+ + + +Q EIV+E VSG K ++VFD TPFYAE GGQ+ D Sbjct: 464 EDKTAQGK-------------LLVAIQDDEIVDE-VSG-KAQLVFDVTPFYAEMGGQVAD 508 Query: 531 TGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G I D + + DVQ G + H++ L+ S L ID + R + NH Sbjct: 509 HGV-IKDAEGQVVANVLDVQHAPHGQNL-HSVETLSPLKVGESYTLEIDKERRAAVVKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G+H Q GS + LRFD TH +T EL IE VN++I Q+L Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSL 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T + A GA AL G KY VRVV + G +S LCGGTH +T EI L Sbjct: 627 KVETVETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G+RRI A+TGQ+A + L +A+ +K Q V+ +V + +E Sbjct: 682 FKIVKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLNEVATLVKAPQTSQVLAKVTSLQDE 741 Query: 767 YRKLQLIHAKR--KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + Q + KL + D + +NF++ ++ D+ L+++ D ++K Sbjct: 742 LKTAQKENDALAGKLAASQSDEIFKNVQTAGSLNFIASEVTVPDANGLRNLADIWKQKEL 801 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV EK + ++ + D+ A +L + A + G GGG+P MA +GG Sbjct: 802 SDVLVLVAKIGEKVSLLVASKSSDV----KAGNLVKELAPFV-DGRGGGKPDMAMAGGSK 856 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 857 AAGIPELLAAVAEKL 871 >gi|292670903|ref|ZP_06604329.1| alanine-tRNA ligase [Selenomonas noxia ATCC 43541] gi|292647524|gb|EFF65496.1| alanine-tRNA ligase [Selenomonas noxia ATCC 43541] Length = 872 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 331/923 (35%), Positives = 521/923 (56%), Gaps = 87/923 (9%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L+FF +K H L S SL+P NDPTL+ +GM P K FTG+ KP + + T Sbjct: 4 NELREAYLQFFAEKKDHLRLSSYSLVPENDPTLLLIGAGMAPLKPFFTGKMKPPHNRIVT 63 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+CVR G D++NVGRT RH TFFEMLGNFSFG YFK+ AI AW+ LT+ +L + Sbjct: 64 CQRCVRTG----DIENVGRTARHQTFFEMLGNFSFGDYFKKEAIPWAWEFLTEVVELPKD 119 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++++Y ED+EA +W + + + D I+ + DNFW + GPCGP SEI+ D GE Sbjct: 120 KLWVSIYPEDDEARAIWLEQTDVLPDHIVAL--EDNFWEIG-PGPCGPDSEIYIDLGEEC 176 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R++EIWNLVF Q+++ E IL +IDTG GLER+A+V+Q K Sbjct: 177 GCGEPTCGIGCDCDRFLEIWNLVFTQYDRTEDGEYNILAHKNIDTGCGLERLASVVQNKK 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 N++ DL +I+ +++ + Y + ++ +VI DH RS + +I DGILP+NEGRGY Sbjct: 237 TNFETDLLYPIIEYISKISDVSYGKDPQKDISLKVIADHARSVAIMIMDGILPSNEGRGY 296 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA--YPELIQAKLLIEETLRSEDER 357 VLRR +RRA+ + R+LG T+P + + A+ A + ELI + I+ + E++R Sbjct: 297 VLRRTLRRAIRHGRMLGITKPFLDGAVSAVVEIFRDAKDFSELIAKQDYIKRVIHVEEDR 356 Query: 358 FGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F TL +G+ LL+ ++ L + +LNG++ FKLYDT+G P ++ ++IL G+ +D Sbjct: 357 FASTLAQGIELLNEEVTRLKSENETVLNGEIGFKLYDTYGFPRELTEEILHENGVT-LDD 415 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 FN +E+QR+RAR S + + A + M++ Sbjct: 416 EGFNCEMEKQRTRAR----------------SARAENQAVSVPDLSNVDTGSLMED---- 455 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + + V AI +G++V+ G+ ++ TPF+AE GGQ+GD G Sbjct: 456 ---------ADATKATVVAIWHEGKLVDSLRDGETAGIILSTTPFHAEGGGQVGDEGSLR 506 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + L +++ ++ +G H A VE G ++ S+ + +D + + + NH+ATHLLH Sbjct: 507 SELGYLTVSNTKRLPDGTVYHLAYVEEGQIQQGDSVEICLDTKKKLSSARNHTATHLLHA 566 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++G HV Q GS +TP+ LRFD T+ +P++ +L+ IE+ VN+ I ++ + +M Sbjct: 567 ALRRVVGDHVQQAGSLVTPERLRFDFTNFEPVSEQQLRDIEELVNEEILCSIDLHISMMP 626 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 ++A A GA AL G KY D VRVV V S LCGG+HV++TG+I L IVSES Sbjct: 627 IDEAKALGAMALFGEKYGDVVRVVRVPD-----FSIELCGGSHVTNTGQIGLFKIVSESG 681 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL--- 772 + AG+RRIEAITG+ A ++ ++ L+ LK ++V ++++ E + +Q Sbjct: 682 VAAGVRRIEAITGRAACAYAAEMARTVQELSQKLKTRSEDLVAQIDKFMTERKSMQEQLR 741 Query: 773 -------IHAKRKLQLNVEDLSCHKI----ADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 +KL + V+++ ++ A+V+ M EL+++ D +K+ Sbjct: 742 SFAEFRDKADAQKLLMGVQEVGEFRVVVGKANVDSMD---------ELRNIADLTCEKLD 792 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL------GGGGGGGRPHMA 875 SGI++L + +K V +VV D AV L + ++ GGGGGGRP MA Sbjct: 793 SGIVVLGAVIDDK---VSLVVKADKA----AVKLGAHAGNIIKAAAKAVGGGGGGRPDMA 845 Query: 876 QSGGPNGNKADQAIAGVASFLKK 898 Q+GG N + QA + +++ Sbjct: 846 QAGGKNPEQLSQAFDEAVAVIRQ 868 >gi|188528029|ref|YP_001910716.1| alanyl-tRNA synthetase [Helicobacter pylori Shi470] gi|205830066|sp|B2UV04|SYA_HELPS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|188144269|gb|ACD48686.1| alanyl-tRNA synthetase [Helicobacter pylori Shi470] Length = 847 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 314/833 (37%), Positives = 469/833 (56%), Gaps = 56/833 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKSKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + ++I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFERIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ + + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISDLASLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPP 481 ++EQ R++A G + + ++ Y F+GY+ Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYET------------------- 453 Query: 482 IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL 541 T + ++ + + +A Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 454 ---TECCAKVLGFFDSDFKEITDAKPNQEVWVLLEKTPFYAEGGGAIGDRGALLKDDEEA 510 Query: 542 QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL 601 I K G+ +++ + + + + D R +++ +HSATHLL AL +L Sbjct: 511 AIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSALREVL 568 Query: 602 GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA 661 GSHVSQ GS + LRFD +H K + EL+ +ED VN I ++L M A Sbjct: 569 GSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLNSQVEHMPLNQAKD 628 Query: 662 SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 GA AL KY + VRVVS +++ + LCGG HV +TG I IV ES + +G+R Sbjct: 629 KGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVSSGVR 683 Query: 722 RIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL 781 RIEA+ G+ ++++LK+ LK +V+ + ++ E + Q K + Sbjct: 684 RIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVIAGINKLKESVKNSQ------KAPV 735 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 +VE L KI VN + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 736 SVE-LPVEKIHGVNLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784 >gi|125717605|ref|YP_001034738.1| alanyl-tRNA synthetase [Streptococcus sanguinis SK36] gi|205830231|sp|A3CLY3|SYA_STRSV RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|125497522|gb|ABN44188.1| Alanyl-tRNA synthetase, putative [Streptococcus sanguinis SK36] Length = 872 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 342/931 (36%), Positives = 511/931 (54%), Gaps = 94/931 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQEF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L +++G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVISGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 + +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 AEEADMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + AIV VE +G ++F +TP Sbjct: 459 ------SAFNYEKEELTAE-------------LLAIVADDAAVESVETGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G I DG + Q+TDVQK G +H V L S L ID Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI + IV E I +G RRI A+T + A ++E LK++A+ LK Q Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKE 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ +A+ K + +V++ + H +F++ +S D Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKDVQEANGH-----SFIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K + T+D+ +A +L + A ++ Sbjct: 787 AGALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +A VA L Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|83596048|gb|ABC25406.1| alanyl-tRNA synthetase [uncultured marine bacterium Ant39E11] Length = 868 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 339/909 (37%), Positives = 483/909 (53%), Gaps = 89/909 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL FF GH ++ S+ L+ +D +LMF N+GM PFK+IFTG + + V Sbjct: 2 TASQIRQAFLNFFANKGHTIVHSAPLVTKDDSSLMFVNAGMNPFKDIFTGAKPASHSRVA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT + LD Sbjct: 62 DSQKCLRVSGKHNDLEEVGIDTYHHTLFEMLGNWSFGDYFKQEAIDWAWELLTDVYQLDP 121 Query: 123 RRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 RLY+T+++ D+EA W K L AD+I+ +DNFW M ETGPCGPCSE Sbjct: 122 ERLYVTIFEGDKGDGLALDDEAKSHWLK--HLPADRILNGNKSDNFWEMGETGPCGPCSE 179 Query: 175 IFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 I D + G + + + IE+WNLVFMQ+++ LP +DTGMG Sbjct: 180 IHIDLRPEKERKQKDGATLVNMDHPQVIEVWNLVFMQYQRMADGSLVDLPSQHVDTGMGF 239 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIAD 288 ER+ ++ K++NYD D+F IQ E ++G Y + V+ RVI DH+R+ F IAD Sbjct: 240 ERLVRAIEGKSSNYDTDVFAPYIQRLESMSGRTYGKDESVDVAMRVIADHVRAVGFAIAD 299 Query: 289 GILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 G LP+N G GYV+RRI+RRA+ Y +L + EP + L+P + MG A+PEL + L+ Sbjct: 300 GQLPSNTGAGYVIRRILRRAVRYGYSVLQFKEPFIARLVPDMVENMGKAFPELKAQQTLM 359 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + + E++ F +TL GL LD + GK L G F+LYDT+G PLD+ I Sbjct: 360 TQVIEEEEQAFLRTLASGLKRLDAAMKE-GKP--LMGKQCFELYDTYGFPLDLTALICKE 416 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI--WFSLKEKYGATQFIGYDLLRG 465 +G+ +D F++A+ EQ+ R++ +K+ W + G QF+GYD Sbjct: 417 KGIV-LDEKGFHEAMAEQKGRSKV-------AGAQKVGDWVEVAPGIG-DQFVGYDQYTT 467 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + RKV K G +VV TPFY E G Sbjct: 468 ESKLLRYRKVSNAK----------------------------GDFTQVVIQPTPFYPEGG 499 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G I R+++ + +A I AI+ + ++ ID R+ + Sbjct: 500 GQVGDRGWLIMGKDRIEVLNCSSEAGAILHLVAIMP---AKPTAAVKAVIDEGKRKASAQ 556 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NHSATHLLH AL ILG HV Q GS ++ + LRFD +H + I + EL +IE +V+ I Q Sbjct: 557 NHSATHLLHKALRDILGVHVEQRGSFVSDEYLRFDFSHFQRIAAKELMAIESHVSTAILQ 616 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + P+ R E+A A GA AL G KY D VRV+ + S LCGGTHVS+T Sbjct: 617 DHPLQEFRESTMEEAKAKGAMALFGEKYGDSVRVIQLG------DSVELCGGTHVSTTAA 670 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEI 763 + IVSESS+ AGIRRIEA+ G A +L + +S + L+V++G + + +E + Sbjct: 671 LSPFVIVSESSVAAGIRRIEALAGHSAAIYL---KQAQQSQQAILEVTKGQDPLEAMESM 727 Query: 764 WEEY----RKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 +E + L+ + + L E L S I N M+ + ++D+ K + AL K Sbjct: 728 KKELSAMQKALKSYQSAQAGDLKTELLQSAKAIGPYNMMAAAV-DLDAASAKDLAFALVK 786 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG---GGGGGGRPHMA 875 + +++L +S + KA + V + LD V A K LG G GGG+ A Sbjct: 787 QDPKSVVLL-ALSNDGKAQAHMAVGKQALD----VAHAGQWVKALGHYIQGSGGGQDFYA 841 Query: 876 QSGG--PNG 882 +GG P+G Sbjct: 842 SAGGKSPSG 850 >gi|146318890|ref|YP_001198602.1| alanyl-tRNA synthetase [Streptococcus suis 05ZYH33] gi|253751968|ref|YP_003025109.1| alanyl-tRNA synthetase [Streptococcus suis SC84] gi|253753793|ref|YP_003026934.1| alanyl-tRNA synthetase [Streptococcus suis P1/7] gi|253755331|ref|YP_003028471.1| alanyl-tRNA synthetase [Streptococcus suis BM407] gi|205830232|sp|A4VVR3|SYA_STRSY RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145689696|gb|ABP90202.1| Alanyl-tRNA synthetase [Streptococcus suis 05ZYH33] gi|251816257|emb|CAZ51885.1| alanyl-tRNA synthetase [Streptococcus suis SC84] gi|251817795|emb|CAZ55547.1| alanyl-tRNA synthetase [Streptococcus suis BM407] gi|251820039|emb|CAR46252.1| alanyl-tRNA synthetase [Streptococcus suis P1/7] gi|319758333|gb|ADV70275.1| alanyl-tRNA synthetase [Streptococcus suis JS14] Length = 872 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 342/923 (37%), Positives = 510/923 (55%), Gaps = 78/923 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D +++ W + G+ +I + DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+G E I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A + Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG TEP + L+ + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +T+ G + ++ L GK EI D+ FKLYDT+G +++ ++ Sbjct: 352 IEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDI-FKLYDTYGFQVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462 + RG+ +DI F A++EQ+ RARA + GS G + ++ E+ +T G Sbjct: 411 LAEHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETLAAITEE--STFVYGQTA 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L S +S IV + EAVS + +VFDQTPFYA Sbjct: 468 LEAS---------------------LSVIVADNART-----EAVSEGQALLVFDQTPFYA 501 Query: 523 EAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 E GGQ+ D G A GD I + DVQK G +H + I + L I+ + Sbjct: 502 EMGGQVADHGFVKNATGD-IVATVIDVQKAPNGQPLHTVELSASI-SVGQTYTLEIETKR 559 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ + NH+ATHLLH AL I+G H +Q GS D LRFD TH + +T+ EL+ IE+ V Sbjct: 560 RKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEV 619 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ I +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV Sbjct: 620 NEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHV 674 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 +T EI + I+ E I +G RRI A+TG+ A Q++ LK +A+ +K Q V Sbjct: 675 GNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPN 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVM 813 +VE + ++ R LQ +A K + + D N + +I S+V D+ L++ Sbjct: 735 KVESLAQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFA 794 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D ++K S +++LV +K ++ + D+ +A +L ++ A ++ G GGG+P Sbjct: 795 DNWKQKDYSDVLVLVAAIGDKVNVLVASKSSDV----HAGNLIKVLAPIV-AGRGGGKPD 849 Query: 874 MAQSGGPNGNKADQAIAGVASFL 896 MA +GG + + + VA L Sbjct: 850 MAMAGGSDASAIQTLLNSVADNL 872 >gi|25010884|ref|NP_735279.1| alanyl-tRNA synthetase [Streptococcus agalactiae NEM316] gi|41018224|sp|Q8E600|SYA_STRA3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|23095263|emb|CAD46473.1| Alanyl-tRNA synthetase [Streptococcus agalactiae NEM316] Length = 872 Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust. Identities = 333/921 (36%), Positives = 502/921 (54%), Gaps = 74/921 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECI-PGG----LPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE P L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPDNIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ + + K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVASFL 896 +GG + +K + +A VA L Sbjct: 852 MAGGSDASKIAELLAAVAENL 872 >gi|325697162|gb|EGD39049.1| alanine--tRNA ligase [Streptococcus sanguinis SK160] Length = 872 Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust. Identities = 340/928 (36%), Positives = 507/928 (54%), Gaps = 94/928 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++ Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSSKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + L EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLDINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + A+V VE SG ++F +TP Sbjct: 459 ------SAFNYEKEELTAE-------------LLAVVADDAAVESVESGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE GGQ+ D G I DG + Q+TDVQK G +H V L S L ID Sbjct: 499 FYAEMGGQVADHG-QIFDGAGNLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEID 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 557 HSRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGG Sbjct: 617 QEVNEKIWEALAIETVETDIDTAKGMGAMALFGEKYGKEVRVVTI-----GDYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 THV +T EI + IV E I +G RRI A+T + A + ++E LK++A+ LK Q Sbjct: 672 THVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFTAYREEEEALKAIAATLKAPQIKE 731 Query: 756 VVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805 V +VE + E+ R+LQ A ++ NV++ + H +F++ +S D Sbjct: 732 VPHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSD 786 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 + L++ D ++K S +++LV +K + T+D+ +A +L + A ++ Sbjct: 787 AGALRTFADTWKQKDYSDVLILVAAIGDKVNVLAASKTKDI----HAGNLIKELAPIV-D 841 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVA 893 G GGG+P MA +GG + +A VA Sbjct: 842 GRGGGKPDMAMAGGSKQSAIPALLAAVA 869 >gi|313124260|ref|YP_004034519.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280823|gb|ADQ61542.1| Alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685733|gb|EGD27811.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 877 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 341/918 (37%), Positives = 508/918 (55%), Gaps = 70/918 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF ++GH ++ S+SLIP +DPTL++ NSG+ K F G P + +T Sbjct: 5 NSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RH T FEMLGNFS G YFKE AI AW+ LT DL Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +LY+TVY +D EA ++W ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 121 DKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF +F P +IDTGMGLER+ Sbjct: 178 QENNDVPEDDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERV 235 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I A+E+++ G KY N + + ++I DH+R+ SF I DG Sbjct: 236 LSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDTSFKIIADHIRAISFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP N GRGYVLRR++RRA R LG + L+P + M S YPE+ I + Sbjct: 296 LPGNTGRGYVLRRLLRRAALNGRKLGIAGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKV 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E++RFG TL+ GL LLD ++ K D+ ++G AFK++DT+G P ++ + + Sbjct: 356 IKNEEDRFGVTLEAGLTLLDDLIDKAEKSEDKTISGKDAFKMFDTYGFPYELTVEAAEDK 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ +E Q+ RAR L S G+ ++ +K+K + Sbjct: 416 GLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQDETLMKIKDK---------SVFEYGV 465 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + +E S +V IV ++V++A G+K ++FD+TPFYAE GGQ Sbjct: 466 YEEE-----------------SQLVDIIVDD-KLVDKA-DGEKATLIFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 + D G L ++ DVQ +H V +++ + + L ID R L Sbjct: 507 VADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVILPLVKGQ-TYKLKIDRARREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T PIT ELK++E VN+ I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 ++ V T + E GA AL KY D+VRVV ++ S CGGTH +T +I Sbjct: 626 SIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQMD-----DFSIEFCGGTHCDNTSQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIW 764 + I+SE +I AG+RRIEA+T + A +L G+ + L + + +K ++ ++ ++ + Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKAEDIQSKIASLQ 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE R + +A K Q+N + D+ ++ I +L+ + D + + Sbjct: 741 EELRSAEKQNAAYKAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L G E KA++LI + + LD+ A DL + A + GGGGGGRP+MAQ+G Sbjct: 801 GKSDVLIL-GAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIF-GGGGGGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFL 896 G AI S L Sbjct: 859 GKKPEGLQDAIDAAVSQL 876 >gi|302023989|ref|ZP_07249200.1| alanyl-tRNA synthetase [Streptococcus suis 05HAS68] gi|330833035|ref|YP_004401860.1| alanyl-tRNA synthetase [Streptococcus suis ST3] gi|329307258|gb|AEB81674.1| alanyl-tRNA synthetase [Streptococcus suis ST3] Length = 872 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 342/923 (37%), Positives = 510/923 (55%), Gaps = 78/923 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D +++ W + G+ +I + DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+G E I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A + Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG TEP + L+ + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +T+ G + ++ L GK EI D+ FKLYDT+G +++ ++ Sbjct: 352 IEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDI-FKLYDTYGFQVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462 + RG+ +DI F A++EQ+ RARA + GS G + ++ E+ +T G Sbjct: 411 LAEHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETLAAITEE--STFVYGQTA 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L S +S IV + EAVS + +VFDQTPFYA Sbjct: 468 LEAS---------------------LSVIVADNART-----EAVSEGQALLVFDQTPFYA 501 Query: 523 EAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 E GGQ+ D G A GD I + DVQK G +H + I + L I+ + Sbjct: 502 EMGGQVADHGFVKNATGD-IVATVIDVQKAPNGQPLHTVELSASI-SVGQTYTLEIETKR 559 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ + NH+ATHLLH AL I+G H +Q GS D LRFD TH + +T+ EL+ IE+ V Sbjct: 560 RKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEV 619 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ I +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV Sbjct: 620 NEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHV 674 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 +T EI + I+ E I +G RRI A+TG+ A Q++ LK +A+ +K Q V Sbjct: 675 GNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPN 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVM 813 +VE + ++ R LQ +A K + + D N + +I S+V D+ L++ Sbjct: 735 KVESLAQQVRDLQKENAALKEKAAAAAAGDVFKDVKDANGIRYIASQVQVSDAGALRTFA 794 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 D ++K S +++LV +K ++ + D+ +A +L ++ A ++ G GGG+P Sbjct: 795 DNWKQKDYSDVLVLVAAIGDKVNVLVASKSSDV----HAGNLIKVLAPIV-AGRGGGKPD 849 Query: 874 MAQSGGPNGNKADQAIAGVASFL 896 MA +GG + + + VA L Sbjct: 850 MAMAGGSDSSAIQTLLNSVAENL 872 >gi|22536974|ref|NP_687825.1| alanyl-tRNA synthetase [Streptococcus agalactiae 2603V/R] gi|76799299|ref|ZP_00781465.1| alanyl-tRNA synthetase [Streptococcus agalactiae 18RS21] gi|41018221|sp|Q8E0C4|SYA_STRA5 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|22533828|gb|AAM99697.1|AE014228_18 alanyl-tRNA synthetase [Streptococcus agalactiae 2603V/R] gi|76585342|gb|EAO61934.1| alanyl-tRNA synthetase [Streptococcus agalactiae 18RS21] Length = 872 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 333/921 (36%), Positives = 504/921 (54%), Gaps = 74/921 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I +L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ + + K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVASFL 896 +GG + +K + +A VA L Sbjct: 852 MAGGSDASKIAELLAAVAENL 872 >gi|94988809|ref|YP_596910.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS9429] gi|94992695|ref|YP_600794.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS2096] gi|205830223|sp|Q1JB08|SYA_STRPB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830224|sp|Q1JL53|SYA_STRPC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94542317|gb|ABF32366.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS9429] gi|94546203|gb|ABF36250.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS2096] Length = 872 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 334/918 (36%), Positives = 503/918 (54%), Gaps = 74/918 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y +G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKHDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ +A+ K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVA 893 +GG + +K + +A VA Sbjct: 852 MAGGSDASKIAELLAAVA 869 >gi|170016825|ref|YP_001727744.1| alanyl-tRNA synthetase [Leuconostoc citreum KM20] gi|205830134|sp|B1MXP8|SYA_LEUCK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169803682|gb|ACA82300.1| Alanyl-tRNA synthetase [Leuconostoc citreum KM20] Length = 894 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 338/920 (36%), Positives = 494/920 (53%), Gaps = 64/920 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S +R FL+FF GHE++PS +LIP +DPTL++ NSG+ K F G P +T Sbjct: 7 SEVRQMFLDFFASKGHEIVPSKNLIPQDDPTLLWINSGVATLKKYFDGSVIPKNPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEM+GNFS G YFK I AW+LLT + LD+ Sbjct: 67 QKAIRT----NDIENVGKTARHHTLFEMMGNFSVGDYFKAEVIPWAWELLTSPEWYGLDK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 LY+TVY +D+EA K+W + + L I + DNFW + E GP GP SEIFFD+G Sbjct: 123 DLLYVTVYPKDQEAKKIWLEKTDLPEGHIYEV--EDNFWDIGE-GPSGPDSEIFFDRGPA 179 Query: 183 I-------PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTGMGLE 231 P PG E ERY+EIWN+VF QF + + LP +IDTGMGLE Sbjct: 180 FQNLPDNDPEMYPGG--ENERYLEIWNIVFSQFNHLPGLTDNAQYPELPHKNIDTGMGLE 237 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-----GMKYEGNNIVNHRVIVDHLRSSSFLI 286 R+ +V Q N+D DLF +I+A+E+++ + + + +VI DH+R+ +F I Sbjct: 238 RLVSVFQNGRTNFDTDLFLPIIRATEKMSPDYTYDATKDSESNTSFKVIADHIRAITFAI 297 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LPANEGRGYV+RR++RRA+ + + LG + L+P + M S YPE+ Sbjct: 298 GDGALPANEGRGYVIRRLLRRAVLHGQKLGIQGEFLTKLVPIVAEIMQSYYPEIADNTEK 357 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 I++T+ +E++RF TL GL LL+ V++ ++++G AFKL DT+G PL++ Q+ Sbjct: 358 IQKTIAAEEKRFNATLTGGLSLLNDVIAKAKASGQQVISGADAFKLSDTYGFPLELTQEQ 417 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D++ FN AL+ QR+RARA S + G + DL Sbjct: 418 AADEGLT-VDVVGFNDALQAQRTRARAAR-------------SNDKSMGVQNAVLTDLKV 463 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S ++ + + + + V A++ E G V++VFD+TPFYAE Sbjct: 464 PSDYVGWSETEVSNAAIVAIIGHDNQGVDALLANAE------PGDSVQLVFDKTPFYAEM 517 Query: 525 GGQLGDTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GGQ+ D G + + ++TD Q G VH V + + L ++ Sbjct: 518 GGQVADQGEVLNKQGEVVARVTDTQSAPNGQHVHTVEVVTS-FKLGDQVALKVNLARHVA 576 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 +S NH+ATHLL L ++G V Q GS + P+ LRFD TH P++ L+ IE VN + Sbjct: 577 ISKNHTATHLLDQTLRNVIGGDVHQAGSLVEPEYLRFDFTHEGPVSEQNLEKIETMVNQV 636 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 IA NLP+ + E A GA A+ G KY D VRVVS+ G + GGTH +T Sbjct: 637 IANNLPITWVETDIESAKKMGAVAVFGEKYGDVVRVVSI-----GDFNKEFDGGTHAQTT 691 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVE 761 E+ L IVSES I AG+RRIEA+TG A S +++ LK +A LK + + +VE Sbjct: 692 AELGLFKIVSESGIGAGVRRIEAVTGLAALSQFKAEEQALKVIADSLKAQKLTDAPAKVE 751 Query: 762 EIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK---ELKSVMDAL 816 ++ E + LQ L + +L + N +I +++ L+ V+D Sbjct: 752 DLQVEIKTLQRHLTSVEAQLANAAAQDVFKDVKTQNGYQYITAQLQVSGMDGLRQVVDTW 811 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++ S +++L +K + ++ E F A DL + A + GGGGGGRP MAQ Sbjct: 812 RENYPSDVLVLATHVDDKVSLIVAASPEANKKGFKAGDLIKAIAPKI-GGGGGGRPDMAQ 870 Query: 877 SGGPNGNKADQAIAGVASFL 896 +GG N + A + V++FL Sbjct: 871 AGGKNPAGINDAFSAVSTFL 890 >gi|76788418|ref|YP_329556.1| alanyl-tRNA synthetase [Streptococcus agalactiae A909] gi|123601966|sp|Q3K1P7|SYA_STRA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|76563475|gb|ABA46059.1| alanyl-tRNA synthetase [Streptococcus agalactiae A909] Length = 872 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 334/926 (36%), Positives = 504/926 (54%), Gaps = 84/926 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFI 458 L ID F A++EQ+ RARA S+G+ + T I + YGA Sbjct: 411 -LAEDADYKIDHEGFKAAMKEQQDRARAAVVKGGSMGMQNETLAGIVEESRFDYGA---- 465 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 + + S + I+ E E GQ + +VF QT Sbjct: 466 ---------------------------DSLESNLSVIIADNERTEAVSEGQAL-LVFAQT 497 Query: 519 PFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G D ++ DVQK G +H V L + L I+ Sbjct: 498 PFYAEMGGQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEIN 556 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE Sbjct: 557 KERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIE 616 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I +L + T + E A GA AL G KY VRVV + G +S LCGG Sbjct: 617 QEVNEQIWNDLTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGG 671 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GN 755 TH++++ EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + Sbjct: 672 THLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKD 731 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELK 810 +V+ + + R LQ + + K + + V F++ + D+ L+ Sbjct: 732 AAAKVQALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALR 791 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 + D ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG Sbjct: 792 TFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGG 846 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 +P MA +GG + +K + +A VA L Sbjct: 847 KPDMAMAGGSDASKIAELLAAVAENL 872 >gi|15673706|ref|NP_267880.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403] gi|20532263|sp|Q9CEW0|SYA_LACLA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|12724742|gb|AAK05822.1|AE006402_10 alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis Il1403] gi|326407190|gb|ADZ64261.1| alanyl-tRNA synthetase [Lactococcus lactis subsp. lactis CV56] Length = 872 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 339/915 (37%), Positives = 496/915 (54%), Gaps = 73/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF+ GH + PS SL+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AEVRQMFLDFFKSKGHTVEPSQSLVPVNDPTLLWINSGVATLKKYFDGSVVPENPRLTNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI AW+LLT F+ Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRKEAIAFAWELLTSSEWFEFPA 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LYIT Y D++ + W ++ G+ ++ I DNFW + GP GP +EIFFD+GE Sbjct: 123 EKLYITYYPADKDTYNRWVEV-GVDPTHLVPI--EDNFWEIG-AGPSGPDTEIFFDRGEV 178 Query: 183 IPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 GL +E E +RYIEIWN+V QF + E LP+ +IDTGMGLERM Sbjct: 179 YDPEHVGLKLLAEDIENDRYIEIWNIVLSQFNADPSIPRSEYPELPQKNIDTGMGLERMV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-IVNHRVIVDHLRSSSFLIADGILPA 293 ++Q N+D DLF +I+ E+++G Y ++ ++ +VI DH+RS SF I DG LP Sbjct: 239 CIIQGGKTNFDTDLFLPIIREIEKLSGKTYSPDSENMSFKVIADHIRSLSFAIGDGALPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + + LG + L+P + M S YPE+++ + I + + Sbjct: 299 NEGRGYVLRRLLRRAVMHGKKLGIQGKFLASLVPTVGKIMQSYYPEVLEKEDFIMQIIDR 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+E F +T+D G L+D +L +L GKD + D+ F+LYDT+G P+++ +++ G Sbjct: 359 EEETFNRTIDAGQKLIDELLLNLKSEGKDRLEGADI-FRLYDTYGFPVELTEELAEDEGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F A++ Q+ RARA + GS GA + S+F+ Sbjct: 418 K-IDHEGFKVAMKAQQERARAAVVKGGS-------------MGAQNETLSSIEVESEFLY 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 ED+ + + +Q EIV+E VSG K ++VFD TPFYAE GGQ+ D Sbjct: 464 EDKTTQGK-------------LLVSIQDDEIVDE-VSG-KAQLVFDVTPFYAEMGGQVAD 508 Query: 531 TGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G I D + + DVQ G + H++ L+ S L ID + R + NH Sbjct: 509 HGV-IKDAEGQVVANVLDVQHAPHGQNL-HSVETLSPLKVGESYTLEIDKERRAAVVKNH 566 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G+H Q GS + LRFD TH +T EL IE VN++I Q+L Sbjct: 567 TATHLLHAALHNIVGNHALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSL 626 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T + A GA AL G KY VRVV + G +S LCGGTH +T EI L Sbjct: 627 KVETVETDIATAKEMGAMALFGEKYGKNVRVVKI-----GDYSIELCGGTHTQTTSEIGL 681 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G+RRI A+TGQ+A + L +A+ +K Q V+ +V + +E Sbjct: 682 FKIVKEEGIGSGVRRIIAVTGQKAYEAFKDAENTLNEVATMVKAPQTSQVLAKVTSLQDE 741 Query: 767 YRKLQLIHAKR--KLQLNVED---LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + Q + KL + D + +NF++ ++ D+ L+++ D ++K Sbjct: 742 LKTAQKENDALAGKLAASQSDEIFKNVQTAGSLNFIASEVTVPDANGLRNLADIWKQKEL 801 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++LV EK + ++ + D+ A +L + A + G GGG+P MA +GG Sbjct: 802 SDVLVLVAKIGEKVSLLVASKSSDV----KAGNLVKELAPFV-DGRGGGKPDMAMAGGSK 856 Query: 882 GNKADQAIAGVASFL 896 + +A VA L Sbjct: 857 AAGIPELLAAVAEKL 871 >gi|45656657|ref|YP_000743.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|48428508|sp|P61703|SYA_LEPIC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|45599893|gb|AAS69380.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 977 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 339/984 (34%), Positives = 503/984 (51%), Gaps = 118/984 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +VS IR FL +F+ H ++PSSSL+P DPTL+FT +GMV FK +FTG + Y T Sbjct: 5 SVSEIREIFLNYFKDKSHNVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R DL+ VG+T RH TFFEMLGNFSFG YFKE AI+ A D F D+ Sbjct: 65 SCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGNYFKEEAIEYALDCSVNHFGFDK 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG- 180 ++++TVY +D+EA K+W G+ ++I R+ DNFW A ++G CGPCSE++ D+G Sbjct: 121 NKIWVTVYTDDDEAEKIWLS-KGIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRGI 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 C G + +R++E WN+VF QF Q + L + IDTG GLER+A Sbjct: 180 EKGGPNCATSGTCKPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVAL 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-------------------------- 269 +LQE + YD + + +I E+++G+ YE + Sbjct: 240 LLQEVDSVYDTNELRKIISFYEELSGISYEDKTLSEISEKKNNNQQISSQVRNETKSIQD 299 Query: 270 ---VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 RV+ DH+RS F I DGI P GRGYV+RR++RRA + R L + EP + L+ Sbjct: 300 SRKTAFRVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLV 359 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNG 384 + + YPEL + I +T+ E+E F KTL+ GL ++ ++ + G I +G Sbjct: 360 DKVIEIYKARYPELQRNAAAITKTILVEEELFLKTLELGLEKIESLVQKTKAGGKTIFSG 419 Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH------SL--GL 436 AF LY T+G P ++ ++I+ +GL D F + LE+ R +R SL GL Sbjct: 420 ADAFLLYGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWKVNKVSLMTGL 478 Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496 TE + +S G + Y+ + S + + L P + S V ++ Sbjct: 479 NVDKTEFLGYSSVSGKGNITHLFYNSPKSSNSLSQVDSKLQSSTPAGTGSYDSKQVSSLK 538 Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556 + GQ +V ++TPFY E GGQ+GD G ++ D QK+ + I +H Sbjct: 539 E----------GQAGAIVLNKTPFYPEGGGQVGDIGFLRQGKNVFKVFDTQKENDSI-IH 587 Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616 V G L ++ R +L +HS THLL+ AL T+LG HV Q GS ++P+ Sbjct: 588 FGEVLSGEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVSPEY 647 Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676 LRFD +H +TS E++ IE VN+ I +N PV T+ ++ EDA +GA A G KY +RV Sbjct: 648 LRFDFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKKTGAVATFGEKYGERV 707 Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-------Q 729 RVV + G S CGGTHVS TGEI +I ESS AG RRIE + G Q Sbjct: 708 RVVQM-----GDASIEFCGGTHVSRTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQ 762 Query: 730 RARSHL--------------MGQD-----------------EKLK----SLASFLKVSQG 754 S L +G++ EKL+ S SF + Sbjct: 763 NRFSELTESVQNLNLKIKSELGEEGTKILILSFIPGPDEIREKLEKEGASAVSFFRDLSE 822 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKEL 809 N+ ++EE + K++ A+R + N + + V+ +S I + D L Sbjct: 823 NIATKIEENTSSFLKIKKNLAERDFENNTSVIENVLASSVDTGIGKIVSAIFEDKDPNSL 882 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGG 868 K + D L+ + + +++++G + AS++I + +L L + +L + + ++L GG G Sbjct: 883 KGLSDNLKVR-EKNLLVILGSRNSENASIVITCSSELTLKGIHCGNLIKTACELL-GGKG 940 Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892 GGRP MAQ GG + AIAGV Sbjct: 941 GGRPDMAQGGGKEKQNLESAIAGV 964 >gi|24216106|ref|NP_713587.1| alanyl-tRNA synthetase [Leptospira interrogans serovar Lai str. 56601] gi|41018228|sp|Q8F0T4|SYA_LEPIN RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|24197348|gb|AAN50605.1|AE011499_4 alanyl-tRNA synthetase [Leptospira interrogans serovar Lai str. 56601] Length = 977 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 339/984 (34%), Positives = 503/984 (51%), Gaps = 118/984 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +VS IR FL +F+ H ++PSSSL+P DPTL+FT +GMV FK +FTG + Y T Sbjct: 5 SVSEIREIFLNYFKDKSHNVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R DL+ VG+T RH TFFEMLGNFSFG YFKE AI+ A D F D+ Sbjct: 65 SCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIEYALDCSVNHFGFDK 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG- 180 ++++TVY +D+EA K+W G+ ++I R+ DNFW A ++G CGPCSE++ D+G Sbjct: 121 NKIWVTVYTDDDEAEKIWLS-KGIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRGI 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 C G + +R++E WN+VF QF Q + L + IDTG GLER+A Sbjct: 180 EKGGPNCATSGTCKPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVAL 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-------------------------- 269 +LQE + YD + + +I E+++G+ YE + Sbjct: 240 LLQEVDSVYDTNELRKIISFYEELSGISYEDKTLSEISEKKNNNQQISSQVRNETKSIQD 299 Query: 270 ---VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLL 326 RV+ DH+RS F I DGI P GRGYV+RR++RRA + R L + EP + L+ Sbjct: 300 SRKTAFRVVTDHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLV 359 Query: 327 PALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNG 384 + + YPEL + I +T+ E+E F KTL+ GL ++ ++ + G I +G Sbjct: 360 DKVIEIYKARYPELQRNAAAITKTILVEEELFLKTLELGLEKIESLVQKTKAGGKTIFSG 419 Query: 385 DVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH------SL--GL 436 AF LY T+G P ++ ++I+ +GL D F + LE+ R +R SL GL Sbjct: 420 ADAFLLYGTYGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRESWKVNKVSLMTGL 478 Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496 TE + +S G + Y+ + S + + L P + S V ++ Sbjct: 479 NVDKTEFLGYSSVSGKGNITHLFYNSPKSSNSLSQVDSKLQSSTPAGTGSYDSKQVSSLK 538 Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVH 556 + GQ +V ++TPFY E GGQ+GD G ++ D QK+ + I +H Sbjct: 539 E----------GQAGAIVLNKTPFYPEGGGQVGDIGFLRQGKNVFKVFDTQKENDSI-IH 587 Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616 V G L ++ R +L +HS THLL+ AL T+LG HV Q GS ++P+ Sbjct: 588 FGEVLSGEFIVSQELEAEVEITRRERLKFHHSGTHLLNGALRTLLGDHVLQKGSIVSPEY 647 Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV 676 LRFD +H +TS E++ IE VN+ I +N PV T+ ++ EDA +GA A G KY +RV Sbjct: 648 LRFDFSHPSSLTSEEIRQIESWVNESIRKNFPVETKELSIEDAKKTGAVATFGEKYGERV 707 Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG-------Q 729 RVV + G S CGGTHVS TGEI +I ESS AG RRIE + G Q Sbjct: 708 RVVQM-----GDASIEFCGGTHVSRTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQ 762 Query: 730 RARSHL--------------MGQD-----------------EKLK----SLASFLKVSQG 754 S L +G++ EKL+ S SF + Sbjct: 763 NRFSELTESVQNLNLKIKSELGEEGTKILILSFIPGPDEIREKLEKEGASAVSFFRDLSE 822 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKEL 809 N+ ++EE + K++ A+R + N + + V+ +S I + D L Sbjct: 823 NIATKIEENTSSFLKIKKNLAERDFENNTSVIENVLASSVDTGIGKIVSAIFEDKDPNSL 882 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL-LDRFNAVDLARLSAKVLGGGGG 868 K + D L+ + + +++++G + AS++I + +L L + +L + + ++L GG G Sbjct: 883 KGLSDNLKVR-EKNLLVILGSRNSENASIVITCSSELTLKGIHCGNLIKTACELL-GGKG 940 Query: 869 GGRPHMAQSGGPNGNKADQAIAGV 892 GGRP MAQ GG + AIAGV Sbjct: 941 GGRPDMAQGGGKEKQNLESAIAGV 964 >gi|116514511|ref|YP_813417.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122274757|sp|Q048Z3|SYA_LACDB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830262|sp|Q1G947|SYA_LACDA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116093826|gb|ABJ58979.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126223|gb|ADY85553.1| Ala-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 877 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 340/918 (37%), Positives = 508/918 (55%), Gaps = 70/918 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF ++GH ++ S+SLIP +DPTL++ NSG+ K F G P + +T Sbjct: 5 NSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RH T FEMLGNFS G YFKE AI AW+ LT DL Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +LY+TVY +D EA ++W ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 121 DKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF +F P +IDTGMGLER+ Sbjct: 178 QENNDVPEDDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERV 235 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I A+E+++ G KY N + ++ ++I DH+R+ SF I DG Sbjct: 236 LSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP N GRGYVLRR++RRA R LG + L+P + M S YPE+ I + Sbjct: 296 LPGNTGRGYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKV 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E++RFG TL+ GL LLD ++ +D+ ++G AFK++DT+G P ++ + + Sbjct: 356 VKNEEDRFGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDK 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ +E Q+ RAR L S G+ ++ +K+K + Sbjct: 416 GLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQDETLMKIKDK---------SVFEYGV 465 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + +E S +V IV ++V++A G+K ++FD+TPFYAE GGQ Sbjct: 466 YEEE-----------------SQLVDIIVDD-KLVDKA-DGEKATLIFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 + D G L ++ DVQ +H V +++ + + L ID R L Sbjct: 507 VADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQ-TYKLKIDRARREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T PIT ELK++E VN+ I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + E GA AL KY D+VRVV ++ S CGGTH +T +I Sbjct: 626 AIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQMD-----DFSIEFCGGTHCDNTSQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIW 764 + I+SE +I AG+RRIEA+T + A +L G+ + L + + +K ++ + ++ + Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKVDGIQSKIASLQ 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE R + +A + Q+N + D+ ++ I +L+ + D + + Sbjct: 741 EELRSAEKQNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L G E KA++LI + + LD+ A DL + A + GGGGGGRP+MAQ+G Sbjct: 801 GKSDVLIL-GAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIF-GGGGGGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFL 896 G N AI S L Sbjct: 859 GKNPEGLQDAIDAAVSQL 876 >gi|308062521|gb|ADO04409.1| alanyl-tRNA synthetase [Helicobacter pylori Cuz20] Length = 847 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 314/837 (37%), Positives = 466/837 (55%), Gaps = 64/837 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFHNKGHAVYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPSIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK----FMKEDRKVLC 477 ++EQ R++A G + + ++ Y F+GY+ S F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNVFVGYETTECSAKALGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 P Q+V V+ ++TPFYAE GG +GD G D Sbjct: 473 DANP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALFKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 NEEAAMVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HVSQ GS + LRFD +H K + EL+ +ED +N I ++L M Sbjct: 565 REVLGPHVSQAGSLVESKRLRFDFSHPKALNDKELEKVEDLINAQIFKHLTSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS +++ + LCGG HV +TG I IV ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRIVKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ ++++LK+ LK +V+ + ++ E + Q K Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVIAGINKLKESVKNSQ----KT 733 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + + DL KI V+ + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 734 PVSM---DLPVEKIHGVDLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784 >gi|120434599|ref|YP_860290.1| alanyl-tRNA synthetase [Gramella forsetii KT0803] gi|205830059|sp|A0LXX3|SYA_GRAFK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|117576749|emb|CAL65218.1| alanyl-tRNA synthetase [Gramella forsetii KT0803] Length = 871 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 346/922 (37%), Positives = 504/922 (54%), Gaps = 87/922 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FLEFF+ H ++PS+ ++ +DPTLMFTN+GMV FK F G VT QK Sbjct: 6 IRKQFLEFFKSKSHTIVPSAPMVLKDDPTLMFTNAGMVQFKEFFLGNSVAKSNRVTDTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT+ + + LY Sbjct: 66 CLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAISWAWELLTEVYKISPENLY 125 Query: 127 ITVYDE---------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 ++V++ D EA +LWKKI + ++II DNFW M + GPCGPCSEI Sbjct: 126 VSVFEGSDDRDDLGLDTEALELWKKI--VPEERIIYGNKKDNFWEMGDQGPCGPCSEIHI 183 Query: 178 D-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 D + E PG + + + +EIWNLVFMQ+ ++ + LP IDTGMG ER+ Sbjct: 184 DIRSEEEKAKTPGRDLVNMDHPQVVEIWNLVFMQYNRKANGDLEELPAKHIDTGMGFERL 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGI 290 VLQ +NYD D+F L+ E++TG+ Y E NNI RVI DH+R+ +F IADG Sbjct: 244 CMVLQNTQSNYDTDVFTPLVGEIEEITGVTYGKSEENNIA-MRVIADHVRAVAFSIADGQ 302 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 LP+N G GYV+RRI+RRA+ Y L EP + L+P L +MG+ + EL + LIE Sbjct: 303 LPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFIYKLVPVLSGQMGATFQELKSQQNLIEN 362 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +R E+ F +TLD+GL+LL+ ++ KD+ ++G+ AF+LYDT G P+D+ IL G Sbjct: 363 VIREEEASFLRTLDQGLILLENLMKE-SKDKTISGEKAFELYDTFGFPIDLTALILKENG 421 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F L++Q+ R+R + + +G W L F+GYD L + Sbjct: 422 Y-DLDEKGFEAELKKQKDRSR-EATAVSAGD----WIELN-PVDEESFVGYDKLEADAKI 474 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 RKV +K G+ +VV ++TPFY E GGQ+G Sbjct: 475 ARYRKVESKK---------------------------KGEMFQVVLNKTPFYPEGGGQVG 507 Query: 530 DTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + DG + + D +K+ I +H + TE ++ R + NH+ Sbjct: 508 DKGILMSSDGEVVDVVDTKKENNQI-IH--FTKNLPKNTEAEFKAIVNKTERYNTASNHT 564 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +ILG+HV Q GS + LRFD +H +T EL+ +E+ VN I + L Sbjct: 565 ATHLLHQALRSILGTHVEQKGSMVQSGYLRFDFSHFSKVTGEELEKVENFVNARIREQLS 624 Query: 649 V-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + R ++ ++AI GA AL G KY D VR ++ + D S LCGG HV +T +I Sbjct: 625 LDEQRNISYQEAIDQGAIALFGEKYGDSVR--AIRFGD----SMELCGGIHVKNTSDIWH 678 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I ES++ +GIRRIEAITG+ A + Q L+ + S LK S + V + + EE Sbjct: 679 FKISGESAVASGIRRIEAITGEAAMKYFEEQTNILEEIKSGLKNSN-DPVKAINNLQEEN 737 Query: 768 RKLQLIHAKRKLQLNVEDLS----------CHKIADVNFMSHIISEVDSKELKSVMDALQ 817 I+ KR+++ ++D + I VNF+S + ++D+ +K + L Sbjct: 738 -----INLKRQIESLLKDKAKNLKSKLKHEVKSINGVNFLSKKV-DLDAAGIKDLAFQLG 791 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++I + +L G + KA + ++++L+ NA + R K + GGGGG+P A Sbjct: 792 EEIDD-LFILFGAEQHGKALLSCYISKELVKGKDLNAGQIVRELGKYI-QGGGGGQPFFA 849 Query: 876 QSGGPNGNKADQAIAGVASFLK 897 +GG N + ++A+ SF+K Sbjct: 850 TAGGKNPDGLNEALQKAESFIK 871 >gi|116494328|ref|YP_806062.1| alanyl-tRNA synthetase [Lactobacillus casei ATCC 334] gi|122264244|sp|Q03B02|SYA_LACC3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116104478|gb|ABJ69620.1| alanyl-tRNA synthetase [Lactobacillus casei ATCC 334] Length = 881 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 336/910 (36%), Positives = 507/910 (55%), Gaps = 77/910 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D +RLY+TVY +D+ +LW+K +G+ D I+ DNFW + E GP GP SEIF Sbjct: 117 WFGFDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIF 172 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228 +D+G+ P PG E RY+EIWN+VF + RF+ P +IDTGM Sbjct: 173 YDRGQQFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 229 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFL 285 GLER+ V+Q ++ DLF +I+A+E+++ K G + V+ ++I DH R+ +F Sbjct: 230 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFA 289 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG LP+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + Sbjct: 290 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQ 349 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 I++ + SE+ RF +TLD G+ LL+ +++ L GK EI D AFKL+DT+G P+++ Sbjct: 350 FIQKVIESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGAD-AFKLFDTYGFPVEMTN 408 Query: 403 DILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 + GL +D+ F + + QR RAR A G+ +K+ S+ ++F G+ Sbjct: 409 EYAQDEGLQ-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSITT---PSKFTGW- 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 +L + +S+ +V + ++++VS +++FD+TPFY Sbjct: 464 --------------------TELDHKHASLQTIVVN--DQLQDSVSEGTAQLIFDETPFY 501 Query: 522 AEAGGQLGDTG-CAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 AE GGQ+ D G DG L ++DVQ G +H V +G L T L++D Sbjct: 502 AEMGGQVADHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLETGQQYWLSVDPLR 560 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+++S+NH+ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E V Sbjct: 561 RKKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIV 620 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I LP+ + M E+A GA A+ G KY VR+V + G +++ GGTH Sbjct: 621 NQKIWDALPITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHP 675 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 +++ + L I SES I AGIRR+EA+T + A +L Q + L A LK+ Q NV Sbjct: 676 TNSNALGLFKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPS 735 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813 +V ++ + + Q A + +L + + ++ + ++ + EL+ + Sbjct: 736 KVTQLQADLKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLA 795 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGR 871 D + K Q+ I+++G KA++L+ V + F A DL + ++ KV GGGGGR Sbjct: 796 DKWKAK-QASDILVLGTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVG--GGGGGR 852 Query: 872 PHMAQSGGPN 881 P MAQ+GG N Sbjct: 853 PDMAQAGGKN 862 >gi|306827097|ref|ZP_07460394.1| alanine--tRNA ligase [Streptococcus pyogenes ATCC 10782] gi|304430731|gb|EFM33743.1| alanine--tRNA ligase [Streptococcus pyogenes ATCC 10782] Length = 872 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 333/918 (36%), Positives = 503/918 (54%), Gaps = 74/918 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-- 116 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSLD 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y +G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R Q +A+ K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVA 893 +GG + +K + +A VA Sbjct: 852 MAGGSDASKIAELLAAVA 869 >gi|318040735|ref|ZP_07972691.1| alanyl-tRNA synthetase [Synechococcus sp. CB0101] Length = 889 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 342/910 (37%), Positives = 505/910 (55%), Gaps = 77/910 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+F+++ GH+ + S+SL+P DPT++ T +GM+PFK +F GQ++ T+ Sbjct: 20 AEIRAAFLDFYEQRGHKPMASASLVP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRATSS 78 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T F L + Sbjct: 79 QKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTGVFGLSPKN 134 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECI 183 L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + E Sbjct: 135 LVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPELG 194 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G+ E+ R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ NN Sbjct: 195 DDGI--DLEDDSRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQAVPNN 252 Query: 244 YDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL LI+ + Q+ G+ Y + + +VI DH R+ + LI DG+ +N GRGY+ Sbjct: 253 YETDLIYPLIETAAQLAGVAYPALDDKGKTSLKVIGDHSRAITQLICDGVTASNLGRGYI 312 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RR + + RLLG +P + + A M SAYP+L++ + +I L+ E+ RF + Sbjct: 313 LRRLLRRVVRHGRLLGIDKPFLTAMGEASIALMQSAYPQLVERREVILAELQREEARFLE 372 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG LL VL+ K + ++G+ AF+LYDT+G PL++ ++I GL +D+ F Sbjct: 373 TLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTEEIAEEHGLT-MDLEGFEA 429 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A+E QR RA+A ++ + E I + AT F GY+LL Sbjct: 430 AMEAQRQRAKAAAVSIDLTLQEAI-DQVAADLEATAFRGYELLE---------------- 472 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 SS V A+V GE + AV+G V+VV D TPFY E GGQ+GD G GD + Sbjct: 473 -------QSSCVLALVVNGEPAQRAVAGDSVQVVLDTTPFYGEGGGQVGDRGVLSGDELI 525 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 + I D + +FVH +ERG+L + +D RR+ NH+ATHLL AL + Sbjct: 526 VAI-DAVSRNRSVFVHSGRIERGVLSLGDVVHGQVDRACRRRAQANHTATHLLQAALKQV 584 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 + + Q GS + D LRFD + ++++EL+ IE +N I++ + + M E A Sbjct: 585 VDPGIGQAGSLVDFDRLRFDFHCPRAVSASELEQIEVLINGWISEAHSLEVQEMAIEKAK 644 Query: 661 ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IVSES + AGI Sbjct: 645 AAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVSESGVAAGI 699 Query: 721 RRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 RRIEA+ G ++L +D +K L K +V RV ++ +E + Q A + + Sbjct: 700 RRIEAVAGPAVLAYLNERDGVVKQLGERFKAQPAEIVDRVVQLADELKASQKALAAAREE 759 Query: 781 LNVEDLSCHKIADVNFMSH--IISEVDSKE---LKSVMDALQKKIQSGIIMLVGISKEKK 835 L + + V H +++ +D E L+S L ++ G Sbjct: 760 LALAKSAALAGLAVAVGEHQLLVARLDGVEGGGLQSAAQGLADQLGDG------------ 807 Query: 836 ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG----------------RPHMAQSGG 879 A+V++ D D + +A V+ G G RP++AQ+GG Sbjct: 808 AAVVLGGLPDPADLGKVILVASFGKAVIAAGPKAGAFIGGIAKACGGGGGGRPNLAQAGG 867 Query: 880 PNGNKADQAI 889 +G D A+ Sbjct: 868 RDGAALDGAL 877 >gi|220912769|ref|YP_002488078.1| alanyl-tRNA synthetase [Arthrobacter chlorophenolicus A6] gi|219859647|gb|ACL39989.1| alanyl-tRNA synthetase [Arthrobacter chlorophenolicus A6] Length = 898 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 332/922 (36%), Positives = 497/922 (53%), Gaps = 78/922 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I +++FF GH +PS+SL+ +DP+L+FT +GMVPF T +E+ Y T+VQK Sbjct: 10 ITKRWVDFFVSKGHTAVPSASLV-SSDPSLLFTVAGMVPFIPYLTAREEAPYTRATSVQK 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 C+R G D++ VG+T RH TFF+M GNFSFG YFKE AI+ AW+LLT D L Sbjct: 69 CIRTG----DIEEVGKTARHGTFFQMCGNFSFGDYFKEDAIKYAWELLTTSVDDGGYGLP 124 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 L++TVY+ED+EA +LW K +G+ A++I ++ DN+W+ + GP GPCSEI++D+G Sbjct: 125 PELLWVTVYEEDDEAKELWLKNTGVPAERIQKMGKADNYWNTGQPGPAGPCSEIYYDRGP 184 Query: 182 C--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQER------FILPKMSIDTGMGLERM 233 I GG P + E RYIEIWNLVFMQ++ N + + LPK +IDTG+G+ER+ Sbjct: 185 AYGIEGG-PLADET--RYIEIWNLVFMQYQIDNVRSKDDFDIVGELPKKNIDTGLGMERL 241 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSF 284 A +LQ N Y+ D + +I + +++G +Y + V RV+ DH+RS+ Sbjct: 242 AMILQGVENMYETDQVRPVIDKAAELSGKEYTSAETPDDPHHTDDVRMRVVGDHIRSALM 301 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 LI+DG+ P+NEGRGYVLRR++RRA+ RLLG + + LLPA M YP + Sbjct: 302 LISDGVTPSNEGRGYVLRRLIRRAVRSMRLLGVEQACLPDLLPASRDAMKGVYPVVETDF 361 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 I +E++ F +T+ G L+ V ++ L+G+ AF L+DT+G P+D+ + Sbjct: 362 ARISRIAYAEEKAFLRTIASGTARLEEAVKESKAANKQLSGEDAFALHDTYGFPIDLTLE 421 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + GL +D +F ++EQR RA+A + G G + F G T F GY L Sbjct: 422 MAEEAGLK-VDEAAFRSLMQEQRQRAQADAKGKKGGHADLSAFQDILAQGETVFTGYTEL 480 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 G S V+ ++ G V++A +G ++E+V +TPFYAE Sbjct: 481 DGE-----------------------SRVRGLLTGGRPVQQAATGDEIELVLSETPFYAE 517 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 AGGQ DTG GDG +++ DVQ+ +G+ VH AIV G + + + +D + R Sbjct: 518 AGGQAADTGLITGDGFVVEVLDVQRPVKGLSVHKAIVREGEIGADSLVRAAVDRERRHAA 577 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 H+ TH++H AL ILG +Q GS LRFD + +++A IE+ N I Sbjct: 578 EQAHTGTHIVHAALHQILGPEATQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVSNLAI 637 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N V T++M +A A GA AL G Y VRVV ++ G S LCGGTHV++T Sbjct: 638 RNNYAVETKVMGLAEAKALGAMALFGENYGSEVRVVEID----GAWSRELCGGTHVANTS 693 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV--- 760 I L ++ E S+ +G RR+EA G A HL + + L LKV G + R+ Sbjct: 694 LIGSLSLLGEQSVGSGNRRVEAFVGMEAFRHLAAERALVTELTDLLKVPSGQLADRISAT 753 Query: 761 -------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD-SKELKSV 812 E+ + RK QL + +L + +D A V+ ++H V + +++ + Sbjct: 754 LAKLKATEKELDRLRKEQLAASAAQLVNSAKD-----AAGVSLIAHDAGSVSGADDIRGL 808 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGG 870 L+ ++ S + +++V T + A L RL+A VL GGGGGG Sbjct: 809 ALDLRNRLGSAPAAVAVAGVANDRPLVLVATNEAARNAGVKAGALVRLAAGVL-GGGGGG 867 Query: 871 RPHMAQSGGPNGNKADQAIAGV 892 + +AQ GG + K A+A + Sbjct: 868 KDDVAQGGGTDAGKVGAALAAI 889 >gi|77408860|ref|ZP_00785587.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1] gi|77172546|gb|EAO75688.1| alanyl-tRNA synthetase [Streptococcus agalactiae COH1] Length = 872 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 334/921 (36%), Positives = 503/921 (54%), Gaps = 74/921 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFXVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDATAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ + + K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVASFL 896 +GG + +K + +A VA L Sbjct: 852 MAGGSDASKIAELLAAVAENL 872 >gi|78185740|ref|YP_378174.1| alanyl-tRNA synthetase [Synechococcus sp. CC9902] gi|78170034|gb|ABB27131.1| alanyl-tRNA synthetase [Synechococcus sp. CC9902] Length = 899 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 334/892 (37%), Positives = 509/892 (57%), Gaps = 55/892 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63 + IR+ FL F+++ GH+++ S+SLIP DPT++ T +GM+PFK +F GQ E+P +A T+ Sbjct: 27 AEIRSAFLRFYEERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQERPAPRA-TS 84 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ + +D + Sbjct: 85 SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVYGIDPK 140 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGEC 182 L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + E Sbjct: 141 HLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL 200 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G+ E+ +R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ+ N Sbjct: 201 GDEGI--DLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 258 Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LIQA+ G+ Y + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 259 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 318 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P ++ + A + A+P +++ + +I L+ E+ RF Sbjct: 319 ILRRLLRRVVRHGRLLGINKPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 378 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL K + ++G AF+LYDT+G PL++ Q+I +GL +D+ F Sbjct: 379 ETLERGEKLLSEVLDS--KPKQISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 435 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E+QR RA+A ++ + T + + AT F GY L ++ Sbjct: 436 EAMEQQRQRAKAAAVSIDL-TLQDAIDQVVATQKATAFQGYQRL--------------EQ 480 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 P S V+A+V GE A +G V++V + TPFY E GGQ+GD G G + Sbjct: 481 P---------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 531 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + I V + + +FVH +ERG L ++ +D RR+ NH+ATHLL AL Sbjct: 532 IVAIESVSRSRD-VFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 590 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + Q GS + D LRFD + +T+ +L IE +N IA+ ++ M + A Sbjct: 591 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLGQIETLINGWIAEAHGLLVEEMAIDQA 650 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IV ES + AG Sbjct: 651 KAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVGESGVAAG 705 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777 IRRIEA+ G +L ++ +K L K G +V RV + +E + LI A+ Sbjct: 706 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 765 Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG----I 830 +L + K I + + VD L+ +L ++ G +++G Sbjct: 766 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGTGLQGAAQSLAAQLGDGAAVVLGGLPDP 825 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 S + K ++ +D++ + L GGGGGGRP++AQ+GG +G Sbjct: 826 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGGGGRPNLAQAGGRDG 877 >gi|319744847|gb|EFV97185.1| alanine--tRNA ligase [Streptococcus agalactiae ATCC 13813] Length = 872 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 334/921 (36%), Positives = 502/921 (54%), Gaps = 74/921 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y +G N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGENM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKSEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTESVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADHGVIKNDKGDTVAEVVDVQKAPNGQPLHTVSV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL I+G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNIIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ + + K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENVELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKGLAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVASFL 896 +GG + +K + +A VA L Sbjct: 852 MAGGSDASKIAELLAAVAENL 872 >gi|191637661|ref|YP_001986827.1| alanyl-tRNA synthetase [Lactobacillus casei BL23] gi|301065839|ref|YP_003787862.1| alanyl-tRNA synthetase [Lactobacillus casei str. Zhang] gi|190711963|emb|CAQ65969.1| Alanyl-tRNA synthetase [Lactobacillus casei BL23] gi|300438246|gb|ADK18012.1| Alanyl-tRNA synthetase [Lactobacillus casei str. Zhang] gi|327381717|gb|AEA53193.1| Alanyl-tRNA synthetase [Lactobacillus casei LC2W] gi|327384883|gb|AEA56357.1| Alanyl-tRNA synthetase [Lactobacillus casei BD-II] Length = 881 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 336/910 (36%), Positives = 507/910 (55%), Gaps = 77/910 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D +RLY+TVY +D+ +LW+K +G+ D I+ DNFW + E GP GP SEIF Sbjct: 117 WFGFDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIF 172 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228 +D+G+ P PG E RY+EIWN+VF + RF+ P +IDTGM Sbjct: 173 YDRGQQFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 229 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFL 285 GLER+ V+Q ++ DLF +I+A+E+++ K G + V+ ++I DH R+ +F Sbjct: 230 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFA 289 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG LP+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + Sbjct: 290 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQ 349 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 I++ + SE+ RF +TLD G+ LL+ +++ L GK EI D AFKL+DT+G P+++ Sbjct: 350 FIQKVIESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGAD-AFKLFDTYGFPVEMTN 408 Query: 403 DILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 + GL +D+ F + + QR RAR A G+ +K+ S+ ++F G+ Sbjct: 409 EYAQDEGLQ-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSITT---PSKFTGW- 463 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 +L + +S+ +V + ++++VS +++FD+TPFY Sbjct: 464 --------------------TELDHKHASLQTIVVN--DQLQDSVSEGTAQLIFDETPFY 501 Query: 522 AEAGGQLGDTG-CAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 AE GGQ+ D G DG L ++DVQ G +H V +G L T L++D Sbjct: 502 AEMGGQVADHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLETGQQYWLSVDPLR 560 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+++S+NH+ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E V Sbjct: 561 RKKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIV 620 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I LP+ + M E+A GA A+ G KY VR+V + G +++ GGTH Sbjct: 621 NQKIWDALPITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHP 675 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 +++ + L I SES I AGIRR+EA+T + A +L Q + L A LK+ Q NV Sbjct: 676 TNSSALGLFKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPS 735 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813 +V ++ + + Q A + +L + + ++ + ++ + EL+ + Sbjct: 736 KVTQLQADLKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLA 795 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGR 871 D + K Q+ I+++G KA++L+ V + F A DL + ++ KV GGGGGR Sbjct: 796 DKWKAK-QASDILVLGTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVG--GGGGGR 852 Query: 872 PHMAQSGGPN 881 P MAQ+GG N Sbjct: 853 PDMAQAGGKN 862 >gi|262202250|ref|YP_003273458.1| alanyl-tRNA synthetase [Gordonia bronchialis DSM 43247] gi|262085597|gb|ACY21565.1| alanyl-tRNA synthetase [Gordonia bronchialis DSM 43247] Length = 900 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 339/931 (36%), Positives = 488/931 (52%), Gaps = 75/931 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+SL+ +DP L+F N+GMVPFK F G++ P + T+VQK Sbjct: 6 IRKRFLDHFIKAGHTEVPSASLL-LDDPNLLFVNAGMVPFKPYFLGEQTPPFDRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR D+D VG T RH+TFF+M GNFSFG YFK AI AW LLT + + Sbjct: 65 CVRT----LDIDEVGITTRHNTFFQMAGNFSFGDYFKREAITFAWTLLTGSVENGGYGIS 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+ TVY +D+EA +W+ G+ A +I R DN+WSM GPCGPCSEIF+D+G Sbjct: 121 PDKLWPTVYLDDDEAEAIWRDEIGVPAQRIQRRGMKDNYWSMGVPGPCGPCSEIFYDRGP 180 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQQN---KQERFIL---PKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E+ K + IL PK +IDTGMG+ER+A Sbjct: 181 EY--GVEGGPEADEDRYIEIWNLVFMQNERGAGGAKDDYEILGPLPKKNIDTGMGIERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-----------IVNHRVIVDHLRSSS 283 +LQ N Y+ DL K +I + +VTG Y N V RVI DH R+S+ Sbjct: 239 CLLQGVDNVYETDLLKPIIDLAAEVTGRAYGAGNHDDRGSAAHEDDVKFRVIADHTRTSA 298 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 LI DG+LP N+GRGYVLRR++RR + ARLLG EP M + M +YPEL + Sbjct: 299 MLIGDGVLPGNDGRGYVLRRLLRRVVRSARLLGAEEPTMGAFIGRAIDLMSPSYPELAEQ 358 Query: 344 KLLIEETLRSEDERFGKTLDRG--LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I E+ F KTL G L + ++G AF L+DT+G P+D+ Sbjct: 359 RDHIVSVAVGEETSFSKTLAAGSKLFADAAAATKAAHRSTISGSDAFTLHDTYGFPIDLT 418 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 ++ GL +D F + EQ+ RA+A + +G + + G T+F G+D Sbjct: 419 LEMAAEAGLE-VDQAGFTGLMAEQKQRAKADATARKTGHADVAVYREFLDRGPTEFTGFD 477 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L + KVL +V G V A G ++ V+ D+TP Y Sbjct: 478 EL------VSEAKVL-----------------GLVADGARVPAATPGTELTVILDRTPLY 514 Query: 522 AEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AE+GGQ+ D G G G+RL++TDVQK + +++H +V+ G + ++ +D R Sbjct: 515 AESGGQIADVGTITTGSGVRLRVTDVQKLGKSVWLHKVVVDEGEIAEGDEVLAAVDAGWR 574 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 + HS TH++H AL +LG +Q GS P LRFD P+T ++ + IE+ N Sbjct: 575 HGATQGHSGTHMVHAALREVLGPGATQAGSLNRPGYLRFDFHQGSPLTDSQKRQIEEISN 634 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 + N PV T +A + GA AL G Y D VRVV + GG S LCGGTHV+ Sbjct: 635 SAVEANYPVHTFETGLAEAKSMGALALFGENYGDVVRVVEI----GGPFSMELCGGTHVA 690 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 ++ +I + ++ ESS+ +G+RR+EA G + L + L LAS LKV V GRV Sbjct: 691 ASSQIGPVTLIGESSVGSGVRRVEAYVGMDSFRFLSKERALLAGLASSLKVPSEEVPGRV 750 Query: 761 EEIWEEYR----KLQLIHAKRKLQLNVEDLSCHKIADVNFM--SHIISEVDSKELKSVMD 814 E++ R +L+ + A + + + + +D+ L+++ Sbjct: 751 EQLVTRLRDAEKQLEKVRADAARSAAAGLVETAEPVGSTLLVGGRLPDGLDANGLRTIAT 810 Query: 815 ALQKKI--QSGIIMLVGISKE----KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867 L+ ++ ++ +I+L ++ K + T D A DL R +A +L GG Sbjct: 811 DLRGRVADRAAVIVLFSVTDAGDGTTKVPFAVATTAAARDAGIKAGDLVRETAPLL-GGR 869 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGG+P +AQ G + + AIA V + + Sbjct: 870 GGGKPDLAQGSGTDATGIETAIARVRELIAR 900 >gi|317182490|dbj|BAJ60274.1| alanyl-tRNA synthetase [Helicobacter pylori F57] Length = 847 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 315/837 (37%), Positives = 468/837 (55%), Gaps = 64/837 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-QEKPVYQAVTTVQ 65 IR FL+FF GH + PS L+P ND TL+FTN+GMV FK+IFTG +P T+ Q Sbjct: 3 IRNEFLQFFHNKGHAIYPSMPLVP-NDATLLFTNAGMVQFKDIFTGIVPRPNIPRATSSQ 61 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFKE AI AW+ +TK + L Sbjct: 62 LCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDL 121 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 YI+V+++D+EA KLW+K + D+I ++ DNFW M ++GPCGPCSEI+ DQGE Sbjct: 122 YISVHEKDDEAVKLWEKF--VPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGE---K 176 Query: 186 GLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 GS + EG+R++EIWNLVFMQ+E+ N LPK SIDTGMGLER+ +L+ K Sbjct: 177 HFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKL 236 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF L++ ++T + Y + RV+ DH R+ +FL+A G+ EGRGYVL Sbjct: 237 NNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVL 296 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ + L+G E + ++ +C + + + L ++K ++ + E+ERF +T Sbjct: 297 RRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVLKECFEEEERFLET 356 Query: 362 LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQA 421 L+ G+ L + L HL +++I +G +AFKLYDT G PLD+ D+L + G A +D+ F Sbjct: 357 LESGMELFNLSLEHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHG-ACVDMQGFESC 415 Query: 422 LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD----LLRGSKFMKEDRKVLC 477 ++EQ R++A G + + ++ Y +F GY+ + F D K + Sbjct: 416 MQEQVKRSKASWKGKQNNAD---FSAILNAYAPNEFAGYETTECCTKALGFFDSDFKEIT 472 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 P Q+V V+ ++TPFYAE GG +GD G + D Sbjct: 473 DAKP--------------------------NQEVWVLLEKTPFYAEGGGAIGDRGALLKD 506 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 I K G+ +++ + + + + D R +++ +HSATHLL AL Sbjct: 507 NEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSD--ERLEIAKHHSATHLLQSAL 564 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 +LG HVSQ GS + LRFD +H K + EL+ +ED VN I ++L M Sbjct: 565 REVLGPHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLN 624 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A GA AL KY + VRVVS +++ + LCGG HV +TG I I+ ES + Sbjct: 625 QAKDKGALALFSEKYAENVRVVS--FKEASIE---LCGGIHVENTGLIGGFRILKESGVS 679 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +G+RRIEA+ G+ ++++LK+ LK +V+ + ++ E + Q Sbjct: 680 SGVRRIEAVCGKAFYQLAKEENKELKNAKIALK--NNDVMAGINKLKESVKNSQ------ 731 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 K ++V DL KI V+ + ++ + D KE+ +D L+ K + + M+ E+ Sbjct: 732 KAPVSV-DLPVEKIHGVDLVVGVVEQGDIKEM---IDRLKSKHERLLAMVFKKENER 784 >gi|228477888|ref|ZP_04062502.1| alanyl-tRNA synthetase [Streptococcus salivarius SK126] gi|228250378|gb|EEK09618.1| alanyl-tRNA synthetase [Streptococcus salivarius SK126] Length = 872 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 333/915 (36%), Positives = 504/915 (55%), Gaps = 72/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FD + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293 V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS +F I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIGDGALPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K IE+ ++ Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIVKR 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+E F +T+D G +LD +L++L GKD + D+ FKLYDT+G P+++ +++ G Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKDTLEGKDI-FKLYDTYGFPVELTEELAEDEGF 417 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID F A++EQ+ RARA + GS G ++ S+F+ Sbjct: 418 K-IDHEGFKAAMKEQQDRARASVVKGGS-------------MGMQNETLANITEPSEFLY 463 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 E S + IV + SGQ + +VF+QTPFYAE GGQ+ D Sbjct: 464 E-------------AETAESRLSVIVADDARHDSVNSGQAL-LVFEQTPFYAEMGGQVAD 509 Query: 531 TGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G I D + ++ DVQ+ G +H VE G L + L ID+ R ++ NH Sbjct: 510 HGT-ISDAAGTVVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHTRRHRVMKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G H Q GS + LRFD TH + +T EL++IE+ VN+ I + Sbjct: 568 TATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKAT 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV T + + A + GA AL G KY VRVVS+ G +S LCGGTHV++T EI + Sbjct: 628 PVTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIGM 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T + A +++ LK++A+ LK Q V +V + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQEQ 742 Query: 767 YRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821 LQ +A K + + + N + +I S+V D+ L++ D ++ Sbjct: 743 LHALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S +++L EK ++ ++D+ +A +L ++ A ++ G GGG+P MA +GG + Sbjct: 803 SDVLVLAAHIGEKVNVLVASKSKDV----HAGNLIKVLAPIV-SGRGGGKPDMAMAGGSD 857 Query: 882 GNKADQAIAGVASFL 896 N ++ VA L Sbjct: 858 ANGIQDLLSAVAEQL 872 >gi|323341496|ref|ZP_08081737.1| alanine--tRNA ligase [Lactobacillus ruminis ATCC 25644] gi|323091107|gb|EFZ33738.1| alanine--tRNA ligase [Lactobacillus ruminis ATCC 25644] Length = 910 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 337/928 (36%), Positives = 516/928 (55%), Gaps = 83/928 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+FF+ GH+++ S+ L+P +DPTL++ NSG+ K F G P Sbjct: 31 MKELSSAQVRQMYLDFFKGKGHDVMKSAPLVPHDDPTLLWINSGVATMKKYFDGTVVPKN 90 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T+ QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+LLT E Sbjct: 91 HRITSSQKSIRT----NDIENVGHTARHHTLFEMLGNFSVGDYFKKEAITWAWELLTSEE 146 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F +D +LY+TVY +D+ A + WK++ G+ I DNFW + E GP GP SEIF Sbjct: 147 WFAMDPEKLYVTVYPKDDAARECWKEV-GVEDSHIYE--AEDNFWDIGE-GPSGPDSEIF 202 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+G+ + P PG E ERY+EIWN+VF +F + LP +IDTGMG Sbjct: 203 YDRGQEMNNVSEDDPENYPGG--ENERYLEIWNIVFSEFNHKPDGTYEPLPHKNIDTGMG 260 Query: 230 LERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFL 285 LER+ +V Q N++ DLF +I + ++ G + G++ ++ +VI DH R+ +F Sbjct: 261 LERVVSVFQHAKTNFETDLFMPIIDETAKMAKGDVHYGDDAEKDISFKVIADHARAVTFA 320 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG LP+NEGRGYV+RR++RRA+ + + LG + L+P + M SAYPE+++ Sbjct: 321 IGDGALPSNEGRGYVIRRLIRRAVMHGQKLGVEGAFLYKLVPIVGKIMESAYPEVLEQSE 380 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEI-LNGDVAFKLYDTHGLPLDIMQD 403 I++ +R+E++RF +TL G+ LL ++S K E L G FKLYDT+G PL++ ++ Sbjct: 381 YIQKVIRNEEDRFNETLKDGVGLLADLISETKAKGETKLAGAGVFKLYDTYGFPLELTKE 440 Query: 404 ILCARGLAGIDIISFNQALEEQRSRAR-----AHSLGLGSGTTEKIWFSLKEKYGATQFI 458 I +GL +D F++ +++Q+ RAR A S+G+ +G L + ++++ Sbjct: 441 IAADQGL-DVDKAGFDEEMQKQKERARSARGNAKSMGVQNGL-------LTDIKTPSEYV 492 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY+ L I+K I+ ++V + VS + +V+FD+T Sbjct: 493 GYEKL-----------------------AADGILKDIIVDNKLV-DVVSEGEAQVIFDKT 528 Query: 519 PFYAEAGGQLGDTGCAIG-DG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G DG + ++ DVQ G +H V ++ + L ++ Sbjct: 529 PFYAEMGGQVADKGIIKNEDGKVVAEVKDVQHAPNGQNMHTLRV-LAEMKKDAKYRLEVN 587 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + ++ NH+ATHLL AL +LG H Q GS + P+ LRFD T T EL+ +E Sbjct: 588 VEFHDKVKKNHTATHLLDQALRDVLGEHTHQAGSLVEPNYLRFDFTKMGATTPEELEKVE 647 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN+ I N+PV T + + E A GA AL KY D VRVV G +S CGG Sbjct: 648 KIVNEKIWANMPVETVVTDIESAKKLGAIALFTEKYGDTVRVVK-----AGNYSMEFCGG 702 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ--- 753 HV +T EI L IVSES + AG+RRIEA+T + A +L ++ LK A+ +KV+Q Sbjct: 703 NHVENTNEIGLFKIVSESGVGAGVRRIEAVTSKEAFEYLEHRNVLLKETAAEMKVAQIKE 762 Query: 754 --GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKEL 809 V G E+I E K+ + K Q +D+ + +A ++ + +L Sbjct: 763 VPHKVQGLQEQIKELENKVSALEDKFASQ-QAKDVFKNVQTVAGKTLIAAAVKVSGMNQL 821 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 +S+ D ++K S +++L G + K S+++ ++D + A DL + A ++ GGGG Sbjct: 822 RSLADQWKEKSLSDVLVL-GSASGDKVSLIVAASDDAIKSGIKAGDLIKAIAPLV-GGGG 879 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGRP++AQ+GG +A+ +L Sbjct: 880 GGRPNLAQAGGKKPEGLPEALKAAEKWL 907 >gi|199598086|ref|ZP_03211509.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus HN001] gi|258507762|ref|YP_003170513.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus GG] gi|199591012|gb|EDY99095.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus HN001] gi|257147689|emb|CAR86662.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus GG] Length = 881 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 335/906 (36%), Positives = 498/906 (54%), Gaps = 73/906 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD D +RLY+TVY +D+ +LW+K+ G++ D I+ DNFW + E GP GP SEIF Sbjct: 117 WFDFDPKRLYVTVYPKDKVTKELWRKV-GVADDHIVE--AEDNFWDIGE-GPSGPDSEIF 172 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228 +D+G+ P PG E RY+EIWN+VF + RF+ P +IDTGM Sbjct: 173 YDRGQSFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 229 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFL 285 GLER+ V+Q ++ DLF +I+A+E+++ K G N V+ ++I DH R+ +F Sbjct: 230 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGANAQDDVSFKIIADHARTVTFA 289 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG LP+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + Sbjct: 290 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQP 349 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 I++ + SE+ RF +TLD G+ LL+ +++ L GK EI D AFKL+DT+G P+++ Sbjct: 350 FIQKVIESEEARFRQTLDAGVNLLNQIIAELKQDGKKEISGAD-AFKLFDTYGFPVEMTN 408 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 + GL +D+ F + + QR RAR ++ G+ + D+ Sbjct: 409 EYAEDEGLK-VDMAGFKKNMAAQRDRARKAR-------------GDRQSMGSQDTVLMDI 454 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 SKF L K + ++AIV ++ +E +GQ +++FD+TPFYA Sbjct: 455 TTPSKFTGWTE--LDHK---------HATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYA 502 Query: 523 EAGGQLGDTGC-AIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 E GGQ+ D G DG L ++TDVQ G +H V+ + + + L++D R Sbjct: 503 EMGGQVADHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKSKLTKGQ-PYWLSVDRLRR 561 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 +++S+NH+ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E VN Sbjct: 562 QKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVN 621 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I LP+ + M +A GA A+ G KY D VR+VS+ G ++ GGTH + Sbjct: 622 QKIWDALPITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPT 676 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGR 759 +T + L I SES I AG+RR+EA+T + A +L Q + LK A LK+ Q NV + Sbjct: 677 NTNALGLFKITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNVPSK 736 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMD 814 V ++ + + Q A + +L + + + ++ + EL+ + D Sbjct: 737 VTQLQADLKTEQKTVAGLQAKLAAQAAAGIFDRAETVGGFKLIAKQVQVAGMNELRQLAD 796 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPH 873 + K S I++L + K ++ A DL + ++ KV GGGGGRP Sbjct: 797 EWKTKQASDILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVG--GGGGGRPD 854 Query: 874 MAQSGG 879 MAQ+GG Sbjct: 855 MAQAGG 860 >gi|259649109|dbj|BAI41271.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus GG] Length = 912 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 337/909 (37%), Positives = 500/909 (55%), Gaps = 79/909 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 32 MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDN 91 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K Sbjct: 92 PRITNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 147 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD D +RLY+TVY +D+ +LW+K+ G++ D I+ DNFW + E GP GP SEIF Sbjct: 148 WFDFDPKRLYVTVYPKDKVTKELWRKV-GVADDHIVE--AEDNFWDIGE-GPSGPDSEIF 203 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228 +D+G+ P PG E RY+EIWN+VF + RF+ P +IDTGM Sbjct: 204 YDRGQSFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 260 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFL 285 GLER+ V+Q ++ DLF +I+A+E+++ K G N V+ ++I DH R+ +F Sbjct: 261 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGANAQDDVSFKIIADHARTVTFA 320 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG LP+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + Sbjct: 321 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQP 380 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 I++ + SE+ RF +TLD G+ LL+ +++ L GK EI D AFKL+DT+G P+++ Sbjct: 381 FIQKVIESEEARFRQTLDAGVNLLNQIIAELKQDGKKEISGAD-AFKLFDTYGFPVEMTN 439 Query: 403 DILCARGLAGIDIISFNQALEEQRSRAR---AHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + GL +D+ F + + QR RAR +GS T L + ++F G Sbjct: 440 EYAEDEGLK-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDT-----VLMDITTPSKFTG 493 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + L D K + ++AIV ++ +E +GQ +++FD+TP Sbjct: 494 WTEL--------DHK--------------HATLQAIVVDDQLQDEVSTGQ-AQLIFDETP 530 Query: 520 FYAEAGGQLGDTGC-AIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G DG L ++TDVQ G +H V+ + + + L++D Sbjct: 531 FYAEMGGQVADHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTVKSKLTKGQ-PYWLSVDR 589 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R+++S+NH+ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E Sbjct: 590 LRRQKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVET 649 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN I LP+ + M +A GA A+ G KY D VR+VS+ G ++ GGT Sbjct: 650 IVNQKIWDALPITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGT 704 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 H ++T + L I SES I AG+RR+EA+T + A +L Q + LK A LK+ Q NV Sbjct: 705 HPTNTNALGLFKITSESGIGAGVRRVEAVTSKEAYEYLTQQQDWLKETADHLKIDQVKNV 764 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKS 811 +V ++ + + Q A + +L + + + ++ + EL+ Sbjct: 765 PSKVTQLQADLKTEQKTVAGLQAKLAAQAAAGIFDRAETVGGFKLIAKQVQVAGMNELRQ 824 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGG 870 + D + K S I++L + K ++ A DL + ++ KV GGGGG Sbjct: 825 LADEWKTKQASDILVLGTEANGKANLLVAANANANQAGLKAGDLIKAIAPKVG--GGGGG 882 Query: 871 RPHMAQSGG 879 RP MAQ+GG Sbjct: 883 RPDMAQAGG 891 >gi|332170337|gb|AEE19592.1| alanyl-tRNA synthetase [Krokinobacter diaphorus 4H-3-7-5] Length = 870 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 341/914 (37%), Positives = 494/914 (54%), Gaps = 74/914 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FL+FF+ H ++PS+ ++ +DPTLMFTN+GMVPFK F G P ++ QK Sbjct: 6 VRKQFLDFFESKKHTIVPSAPMVLKDDPTLMFTNAGMVPFKEYFLGNATPKNARLSDTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG+ HHT FEMLGN+SFG YFKE AI AW+ LT+ +D+ LY Sbjct: 66 CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAIAWAWEFLTEVVKIDKDSLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++V+ D D+EAF +WK+ + D+II DNFW M GPCGPCSEI D Sbjct: 126 VSVFEGDKEDGLDRDQEAFDIWKQ--RIDEDRIIDGNKKDNFWEMGAQGPCGPCSEIHVD 183 Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + + G + + +EIWNLVFMQ+ + LP +DTGMG ER+ Sbjct: 184 IRSAEEKAKVDGKTLINMDHPHVVEIWNLVFMQYNRLADGSLVKLPNQHVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292 VLQ +NYD D+F L+ E +T K + ++ RVI DH+R+ SF IADG LP Sbjct: 244 MVLQGVQSNYDTDVFTPLMSEIETITNSKCGNDEEIDIAVRVIADHVRAVSFSIADGQLP 303 Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 +N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K L+ + Sbjct: 304 SNTGAGYVIRRILRRAIRYGFTFLDMKEPFIYKLVATLVKQMGDAFPELKSQKNLMTNVI 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 R E+ F +TLD+GL+LLD V++ K + ++GD AF+LYDT+G P+D+ IL + L Sbjct: 364 REEEASFLRTLDKGLLLLDNVIADT-KGDTVSGDKAFELYDTYGFPIDLTALILSEKNLK 422 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F AL+EQ+ R+RA + W L E +F+GYD L Sbjct: 423 -LDEKGFEAALKEQKDRSRA-----ATKVETDDWNILHED-AEEEFVGYDTL-------- 467 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + P+ +T + E G+ ++VF+ TPFY E GGQ+GD Sbjct: 468 -------ETPVKITRYRKT------------ESKKDGELYQLVFNLTPFYPEGGGQVGDK 508 Query: 532 G-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLSINHSA 589 G +G + I D KK + +H A + + R T+ + +D + R + ++NH+A Sbjct: 509 GYLETPNGEVVYIIDT-KKENNLIIHLA---KNLPRSTDGTFKAVVDAKQRSRTAVNHTA 564 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH L +LG+HV Q GS + LRFD H +T ELK +ED VN I +NL + Sbjct: 565 THLLHQGLRKVLGTHVEQKGSMVHSGNLRFDFAHFSRVTKEELKEVEDFVNARIRENLSL 624 Query: 650 -VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 R + + A+ GA AL G KY D VR + S LCGGTHV +TG+I Sbjct: 625 EEQRGIPYDQAVQEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVKNTGDIWHF 678 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SE ++ +GIRRIEAIT A+ + + E + + LK +Q V + E Sbjct: 679 KITSEGAVASGIRRIEAITSDAAKDYFTSETEAYNQVKATLKGNQDPVKAITSLLDENAA 738 Query: 769 KLQLIHA--KRKLQLNVEDLSCH--KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + + A K K Q DL+ I V+F++ + ++D+ +K + L + + + Sbjct: 739 LKKQVEALIKEKAQNLSGDLAKEFTDIDGVDFLAKKV-DLDAGAIKDLAFKLGEN-KDNV 796 Query: 825 IMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +L +E KA + ++++L+ + NA + R K + GGGGG+P A +GG N Sbjct: 797 FILFATEQEGKALLSCYISKELVASKQLNAGTVVRELGKHI-QGGGGGQPFFATAGGKNP 855 Query: 883 NKADQAIAGVASFL 896 D AIA V ++L Sbjct: 856 AGIDAAIAEVKNYL 869 >gi|298207536|ref|YP_003715715.1| alanyl-tRNA synthetase [Croceibacter atlanticus HTCC2559] gi|83850172|gb|EAP88040.1| alanyl-tRNA synthetase [Croceibacter atlanticus HTCC2559] Length = 870 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 312/783 (39%), Positives = 437/783 (55%), Gaps = 66/783 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR TFLEFF+ H ++ S+ ++ +DPTLMFTN+GM FK F G P VT QK Sbjct: 6 IRKTFLEFFKSKKHSIVTSAPMVIKDDPTLMFTNAGMNQFKEFFLGNGDPKSSRVTDTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT+ + +++ LY Sbjct: 66 CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKEEAIAWAWELLTEVYKVNKDNLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T++ + D EA+ WK + +S D+I+ DNFW M GPCGPCSEI D Sbjct: 126 VTIFEGDASESLERDTEAYDFWK--NHISEDRILNGNKKDNFWEMGAQGPCGPCSEIHVD 183 Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + + G +E+ + +EIWNLVFMQF ++ LP +DTGMG ER+ Sbjct: 184 LRSKEEKDKVSGAELVNEDHPQVVEIWNLVFMQFNRKADGSLEKLPAQHVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291 VLQ+KT+NYD D F LI+ E +T Y E +I RVI DH+R+ +F IADG L Sbjct: 244 MVLQDKTSNYDTDAFTPLIKEIETITATTYGSSEKTDIA-IRVISDHVRAVAFSIADGQL 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RR + Y L EP + L+ L +MG AYPEL++ + LI Sbjct: 303 PSNTGAGYVIRRILRRGIRYGFTFLNTKEPFIYKLVKTLTKQMGDAYPELVKQENLIYNV 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ F +TLD+GLVLLD ++ EI +G AF+LYDT+G P+D+ IL RG Sbjct: 363 IKEEESSFLRTLDQGLVLLDNIIEKSKSKEI-SGKKAFELYDTYGFPIDLTSLILRERGF 421 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 + ++ F+ L++QR R+R + T W +L + +FIGYD L + Sbjct: 422 S-LNEAEFDAELKKQRDRSRE-----ATKTETGDWVTLIDD-AEQEFIGYDHLEAQVKLT 474 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 RKV +K G+ ++VF+ TPFYAE GGQ+GD Sbjct: 475 RYRKVENKK---------------------------DGEMYQLVFNLTPFYAEGGGQVGD 507 Query: 531 TG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G DG + I D KK + VH + E + +D + R + + NH+A Sbjct: 508 KGYLESPDGDVVYIVDT-KKENNLVVH--FTKNLPKHPEATFKAVVDSKQRMRSASNHTA 564 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL ++LG+HV Q GS + LRFD +H +++ EL +ED VN I + LP+ Sbjct: 565 THLLHQALRSVLGTHVEQKGSMVHSGNLRFDFSHFSKVSAEELTQVEDFVNARIREQLPL 624 Query: 650 -VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 R + + A+ GA AL G KY D VR + S LCGGTHV++T EI Sbjct: 625 EEQRNIPHQKALDEGAIALFGEKYGDAVRTIRFG------KSMELCGGTHVNNTSEIRHF 678 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I+SE ++ +GIRRIEAI+ ++ Q++ L+ + S LK Q + V V + EE Sbjct: 679 KIISEGAVASGIRRIEAISNDAVDTYYAKQNQILEDVKSILKNPQ-DTVKAVSSLQEENS 737 Query: 769 KLQ 771 +L+ Sbjct: 738 ELK 740 >gi|205830481|sp|Q3AVV3|SYA_SYNS9 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 890 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 334/892 (37%), Positives = 509/892 (57%), Gaps = 55/892 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63 + IR+ FL F+++ GH+++ S+SLIP DPT++ T +GM+PFK +F GQ E+P +A T+ Sbjct: 18 AEIRSAFLRFYEERGHKVMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQERPAPRA-TS 75 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW L T+ + +D + Sbjct: 76 SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWQLSTEVYGIDPK 131 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGEC 182 L ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + E Sbjct: 132 HLVVSVFREDDEAEQIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL 191 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G+ E+ +R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ+ N Sbjct: 192 GDEGI--DLEDDDRFIEFYNLVFMQYNRDAEGSLTPLANRNIDTGLGLERMAQILQKVPN 249 Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LIQA+ G+ Y + + +VI DH R+ + LI DG+ +N GRGY Sbjct: 250 NYETDLIFPLIQAAADCAGVDYHQLDDAGKTSLKVIGDHSRAVTQLICDGVTASNLGRGY 309 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG +P ++ + A + A+P +++ + +I L+ E+ RF Sbjct: 310 ILRRLLRRVVRHGRLLGINKPFLVMMGEASIALLKDAHPSVLERQEVILAELQREESRFL 369 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL K + ++G AF+LYDT+G PL++ Q+I +GL +D+ F Sbjct: 370 ETLERGEKLLSEVLDS--KPKQISGAQAFELYDTYGFPLELTQEIAEEQGLE-VDLAGFE 426 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 +A+E+QR RA+A ++ + T + + AT F GY L ++ Sbjct: 427 EAMEQQRQRAKAAAVSIDL-TLQDAIDQVVATQKATAFQGYQRL--------------EQ 471 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 P S V+A+V GE A +G V++V + TPFY E GGQ+GD G G + Sbjct: 472 P---------SCVQALVANGEPATSASAGDHVQIVLESTPFYGEGGGQVGDRGVLSGADV 522 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 + I V + + +FVH +ERG L ++ +D RR+ NH+ATHLL AL Sbjct: 523 IVAIESVSRSRD-VFVHAGRIERGQLTVGDAITAQVDRACRRRAQANHTATHLLQAALKQ 581 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ++ + Q GS + D LRFD + +T+ +L IE +N IA+ ++ M + A Sbjct: 582 VVDPGIGQAGSLVDFDRLRFDFHAPQAVTTEQLGQIETLINGWIAEAHGLLVEEMAIDQA 641 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IV ES + AG Sbjct: 642 KAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVGESGVAAG 696 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKR 777 IRRIEA+ G +L ++ +K L K G +V RV + +E + LI A+ Sbjct: 697 IRRIEAVAGASVLGYLNERELVVKQLGDRFKAQPGEIVERVVALQDELKSTGKALIAAQA 756 Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG----I 830 +L + K I + + VD L+ +L ++ G +++G Sbjct: 757 ELAVAKSAALATKAVAIGSFQLLVERLDGVDGTGLQGAAQSLAAQLGDGAAVVLGGLPDP 816 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 S + K ++ +D++ + L GGGGGGRP++AQ+GG +G Sbjct: 817 SDQGKVILVAAFGKDVIAAKQQAGKFIGTIAKLCGGGGGGRPNLAQAGGRDG 868 >gi|239629711|ref|ZP_04672742.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239528397|gb|EEQ67398.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 878 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 333/902 (36%), Positives = 503/902 (55%), Gaps = 75/902 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P +T QK Sbjct: 6 IRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDNPRITNAQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K F D +R Sbjct: 66 SIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPKWFGFDPKR 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI- 183 LY+TVY +D+ +LW+K +G+ D I+ DNFW + E GP GP SEIF+D+G+ Sbjct: 122 LYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIFYDRGQQFN 177 Query: 184 ------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMATV 236 P PG E RY+EIWN+VF + RF+ P +IDTGMGLER+ V Sbjct: 178 NVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGMGLERLVAV 234 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPA 293 +Q ++ DLF +I+A+E+++ K G + V+ ++I DH R+ +F I DG LP+ Sbjct: 235 IQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFAIGDGALPS 294 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + I++ + S Sbjct: 295 NEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQFIQKVIES 354 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+ RF +TLD G+ LL+ +++ L GK EI D AFKL+DT+G P+++ + GL Sbjct: 355 EEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGAD-AFKLFDTYGFPVEMTNEYAQDEGL 413 Query: 411 AGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D+ F + + QR RAR A G+ +K+ S+ ++F G+ Sbjct: 414 Q-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSITT---PSKFTGW--------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +L + +S+ +V + ++++VS +++FD+TPFYAE GGQ+ Sbjct: 461 ------------TELDHKHASLQTIVVN--DQLQDSVSEGTAQLIFDETPFYAEMGGQVA 506 Query: 530 DTG-CAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G DG L ++DVQ G +H V +G L T L++D R+++S+NH Sbjct: 507 DHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLETGQQYWLSVDPLRRKKVSLNH 565 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E VN I L Sbjct: 566 TATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIVNQKIWDAL 625 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 P+ + M E+A GA A+ G KY VR+V + G +++ GGTH +++ + L Sbjct: 626 PITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHPTNSSALGL 680 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 I SES I AGIRR+EA+T + A +L Q + L A LK+ Q NV +V ++ + Sbjct: 681 FKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPSKVTQLQAD 740 Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 + Q A + +L + + ++ + ++ + EL+ + D + K Q Sbjct: 741 LKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLADKWKAK-Q 799 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGG 879 + I+++G KA++L+ V + F A DL + ++ KV GGGGGRP MAQ+GG Sbjct: 800 ASDILVLGTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVG--GGGGGRPDMAQAGG 857 Query: 880 PN 881 N Sbjct: 858 KN 859 >gi|312864541|ref|ZP_07724772.1| alanine--tRNA ligase [Streptococcus downei F0415] gi|311099668|gb|EFQ57881.1| alanine--tRNA ligase [Streptococcus downei F0415] Length = 873 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 334/906 (36%), Positives = 505/906 (55%), Gaps = 77/906 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQLSSAQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVTPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF+++AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDQAIEWGYELLTSPD 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FDL + +L++T Y +D++ + W G+ A ++ I DNFW + GP GP +EIF Sbjct: 117 WFDLPKDKLFVTYYPDDKDTYNRWI-ACGMEASHMVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFI---LPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF K +R LP +IDTG Sbjct: 173 FDRGEDFDPDHVGLKLLAEDIENDRYIEIWNIVLSQFNADPKLDRKDYQELPSKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +V+ DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIRKVEKLSGKTYDPDGDNM-SFKVVADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRKLGIKETFLYKLVPTVGKIMESYYPEILEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDI 404 I++ ++ E+E F +T+D G L+ +L+ L D + L G FKLYDT+G P+++ +++ Sbjct: 352 IQKIVKREEETFARTIDAGTGHLEELLAQLKADGKDTLEGKDIFKLYDTYGFPVELTEEM 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 +G ID F A++EQ+ RARA + G++ + + L Sbjct: 412 AQDKGYK-IDHAGFQAAMKEQQERARAAVVK-----------------GSSMGMQNETLA 453 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 G + E+ +K +D S + I+ + V+EA +GQ+ +VF +TPFYAE Sbjct: 454 G---IVEESTFSYEKEALD------SSLSVIIVDNKRVQEAETGQEALLVFKETPFYAEM 504 Query: 525 GGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ D G I D + ++ DVQK G +H + L+ + L ID++ R Sbjct: 505 GGQVADKGD-IQDKAGQVLARVLDVQKAPNGQALHKVEL-LADLQVGQTYHLEIDHKRRY 562 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G+H +Q GS + LRFD TH + +T+ EL+ IE+ VN Sbjct: 563 AVEKNHTATHLLHAALHKVIGNHATQAGSLNEEEFLRFDFTHFEAVTAQELRRIEEEVNQ 622 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I Q + V T + + A GA AL G KY VRVV + G +S LCGGTH+ + Sbjct: 623 QIWQAVAVKTIETDIDTAKEMGAMALFGQKYGKEVRVVMI-----GDYSIELCGGTHLGN 677 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 T EI L IV E I +G RRI A+TGQ+A Q++ LK +A+ LKV Q V +V Sbjct: 678 TSEIGLFKIVKEEGIGSGTRRILALTGQQAFEAFRKQEDALKKVAATLKVPQLEQVPAKV 737 Query: 761 EEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDA 815 + E R LQ + K K + + +I S+V D+ L++ D Sbjct: 738 ASLNEANRDLQKEVAELKEKAAAAAAGDVFKDVKEAAGHRYIASQVQVSDAGALRTFADK 797 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPH 873 ++ S +++L + +K +VL+ + AV +L ++ + G GGG+P Sbjct: 798 WKQADYSDVLVLAA-AIGQKVNVLVASKD------KAVPAGKLIKELAPIVSGRGGGKPD 850 Query: 874 MAQSGG 879 MA +GG Sbjct: 851 MAMAGG 856 >gi|325690091|gb|EGD32095.1| alanine--tRNA ligase [Streptococcus sanguinis SK115] Length = 872 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 338/930 (36%), Positives = 506/930 (54%), Gaps = 92/930 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGEC-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEAFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 G+ +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 AEEAGMT-VDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + AIV VE +G ++F +TP Sbjct: 459 ------SAFNYEKEELTAE-------------LLAIVADDASVESVETGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G + + Q+TDVQK G +H V L S L ID+ Sbjct: 499 FYAEMGGQVADHGQIFDVAGNLVAQVTDVQKAPNGQPLHTVEV-LAPLALGQSYKLEIDH 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 SRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 EVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI + IV E I +G RRI A+T + A ++E LK++A+ LK Q V Sbjct: 673 HVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEV 732 Query: 757 VGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 +VE + E+ R+LQ A ++ +V++ + H +F++ +S D+ Sbjct: 733 PHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKDVQEANGH-----SFIASQVSVSDA 787 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866 L++ D ++K S +++LV +K + T+D+ +A +L + A ++ G Sbjct: 788 GALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV-DG 842 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGG+P MA +GG + +A VA L Sbjct: 843 RGGGKPDMAMAGGSKQSAIPDLLAAVAEKL 872 >gi|241896592|ref|ZP_04783888.1| alanyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313] gi|241870184|gb|EER73935.1| alanyl-tRNA synthetase [Weissella paramesenteroides ATCC 33313] Length = 888 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 346/934 (37%), Positives = 502/934 (53%), Gaps = 89/934 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R+ FL FF+ GH++ PS SLIP NDPTL++ NSG+ K F G P Sbjct: 7 MKELSSAEVRSLFLRFFESKGHKIEPSQSLIPQNDPTLLWINSGVATLKKYFDGSVVPEN 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG T RHHT FEM+GNFS G YFKE AI AW+LLT Sbjct: 67 HRITNAQKSIRT----NDIENVGHTARHHTLFEMMGNFSIGDYFKEEAIPWAWELLTSPE 122 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F +D +LY+TVY D++A +W GL D + DNFW + E GP GP SEIF Sbjct: 123 WFGMDPDKLYVTVYPNDDQAKDIWLHKVGLPKDHLYE--EPDNFWDIGE-GPSGPDSEIF 179 Query: 177 FDQGE---------CIPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMS 223 +D+GE PGG E ERY+EIWNLVF QF + ++ LP + Sbjct: 180 YDRGEEFNDPDEAENYPGG------ENERYLEIWNLVFSQFNHLPGLTDNKDYPELPTKN 233 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI--VNHRVIVDHLR 280 IDTGMGLER+ +V Q N++ DLF LI +E ++G KY ++ ++ +VI DH+R Sbjct: 234 IDTGMGLERVVSVFQHAKTNFETDLFLPLIHKTEDISGQFKYGEDDTKDISFKVIADHIR 293 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +F I DG LP+NEGRGY++RR++RRA+ + R LG ++ + L+P + M S YPE+ Sbjct: 294 AVTFAIGDGALPSNEGRGYIIRRLLRRAVLHGRKLGISQVFLKDLVPVVGEIMISYYPEI 353 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLD 399 + I + +E+ RF KTL GL LLD V+ K I++G +AFKLYDT+G P + Sbjct: 354 AKNADYIASIVEAEEIRFNKTLTDGLSLLDDVIEQAKSKKGIIDGAIAFKLYDTYGFPYE 413 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFI 458 + ++ GL +D F++ ++ Q+ RAR A S G ++ LK +Q++ Sbjct: 414 LTEEYATDEGLK-VDRDGFDEQMKAQQERARSARSNKASMGVQNELLTGLKT---PSQYV 469 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 G+ +LT + +V IV ++VEEA +GQ V+ +F +T Sbjct: 470 GWS---------------------ELTVEQTELVNLIVDN-KLVEEANAGQ-VQAIFAKT 506 Query: 519 PFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 PFYAE GGQ+ D G + + ++TDVQ G +H + L L +D Sbjct: 507 PFYAEMGGQVADLGMIYDESGQAVAKVTDVQNAPNGQHLHTLSI-IAPLFVGKQYKLDVD 565 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 +S NH+ATHLL L +LG H +Q GS +T +GLR+D T++ + S +L+ +E Sbjct: 566 RPYHVAVSKNHTATHLLDQTLRNVLGEHTTQAGSLVTAEGLRYDFTYNGAVPSEKLQEVE 625 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 D +N I NLP+ + E A GA A+ KY ++VRVVS+ G +++ GG Sbjct: 626 DIINQKIIDNLPISWIETDIESAKKLGAVAVFTEKYGEKVRVVSI-----GDYNAEFDGG 680 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 TH +ST E+ + IV E AG+RRIEA+TG A + D L A +K Q Sbjct: 681 THANSTAELGMFKIVGEQGTGAGVRRIEAVTGSGAMALFKLHDSWLAKAAEQVKAPQ--- 737 Query: 757 VGRVEEIWEEYRKLQ--LIHAKR-------KLQLNVEDLSCHKIADVNFMSHIISE--VD 805 + EI ++ LQ L A+R KL D + +N + I +E V+ Sbjct: 738 ---LSEINDKISGLQTALKEAERQAASLEQKLANQEADAAFANPQKINNYTLIATEMAVE 794 Query: 806 SKE-LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864 S + L+S D ++ S +++L +K ++ V E + A DL + A + Sbjct: 795 SMDVLRSTADTWKQSTPSDVLVLAANLGDKVNLLVAVAPEAVKKGIKAGDLVKSIAPAI- 853 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGGGGRP MAQ+GG N A A +L++ Sbjct: 854 GGGGGGRPDMAQAGGKNPAGIADAFKQAADWLQE 887 >gi|32490983|ref|NP_871237.1| hypothetical protein WGLp234 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173144|sp|Q8D2W8|SYA_WIGBR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|25166189|dbj|BAC24380.1| alaS [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 873 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 328/899 (36%), Positives = 508/899 (56%), Gaps = 69/899 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR FL FF + H+++ SS+LIP ND TL+FTNSGM FK+IF G +KP Y Sbjct: 1 MKKTTEIRNIFLNFFYEKKHKIMDSSTLIPDNDKTLLFTNSGMNQFKDIFLGFKKPKYIR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEF 118 V T Q+C+R GGKHNDL+ +G+TNRHHTFFEMLGNFSFG YFK IQ AW+LLT K F Sbjct: 61 VATAQRCIRVGGKHNDLNMIGKTNRHHTFFEMLGNFSFGSYFKSDTIQFAWELLTSKKWF 120 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT-------TNDNFWSMAETGPCGP 171 DL + +L +T+Y +D E++ LW + + ++ II I +DNFW+M +TGPCGP Sbjct: 121 DLSKEKLIVTIYYKDIESYNLWVEKTNINPKNIIFIKDKNNILYNSDNFWTMGDTGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 CSEIF+ G+ I E YIEIWNLVFMQF + LP SIDTGMGLE Sbjct: 181 CSEIFYFFGKSI--NYKNIKIYDEEYIEIWNLVFMQFNLHLNGKLSRLPITSIDTGMGLE 238 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADG 289 R++ VLQ+ +NY IDLFK LI ++ +K NI N+ R+I DH+RS+ FLI DG Sbjct: 239 RISCVLQKVNSNYSIDLFKKLIYEISKIIEIK----NIKNYSLRIIADHIRSAIFLIYDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 ++P+ EGRGYVLRRI+RRA+ + + L+ M ++I+ K IE Sbjct: 295 VIPSKEGRGYVLRRIIRRAIFHGNYILNKSCFFYKLVSPAINIMSYIDSKIIKKKKEIEN 354 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 ++ E++ F ++ +G++ L+ L + + + G++AFKL+DT G P+D+ DI C + Sbjct: 355 IIKEEEKIFFFSIKKGMIFLNKNLKKIKNNILK-GEIAFKLHDTFGFPIDLTNDI-CIKN 412 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A+ EQ++++ +S K L Y T+F GY L+ Sbjct: 413 KINVDEKGFFHAMNEQKNKSYKNS------CFNKFNLKLLNNY-CTKFCGYSYLK----- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 C+ +++ N E ++E Q+ ++ D+TPFY E+GGQ+G Sbjct: 461 -------CESQILNIYN-----------LKEEIKEIKENQEGIIILDKTPFYGESGGQVG 502 Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D+G DG+ + D KK F H+ V +GIL+ + ++ R ++S+NHS Sbjct: 503 DSGEIKSKDGV-FSVIDT-KKLGNYFYHYGKVIQGILKINNKITAYVNKIKRNKISLNHS 560 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 +THLLH+A++ +L ++ Q GS I L FD ++ K I ++ IE+ +N+ I N+ Sbjct: 561 STHLLHYAINCLLDKNIIQKGSLICEKYLSFDFSYGKKINIEKINEIENIINEKIRDNVI 620 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + + M+ ++A+ GA AL KY D VRV+++ G S LCGGTH + TG+I Sbjct: 621 IHSNNMDLKNALKIGAKALFKNKYKDLVRVLNI-----GDFSIELCGGTHANRTGDIGCF 675 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I + S I + RI+AITG+ A + + + + +++S +K + +V ++E+I E + Sbjct: 676 VITNFSKISSDTYRIKAITGETAIAFIQKKFNDINTISSLIKSNSNEIVNKIEKITENLK 735 Query: 769 KLQLIHAKRKLQLNVE--DLSCHKIADVN----FMSHIISEVDSKELKSVMDALQKKIQS 822 L+ + K ++ L +KI +N M + E+D L+ +++ ++ +++ Sbjct: 736 ILEKKNKNLKNKIIKNYIKLIFNKIKKINNFEIIMDYFNEEIDKIILREILNKVKTNLKN 795 Query: 823 GIIMLVGISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 GI++L I KK ++ IV VT +L++ A ++ K + GGG + A++ G Sbjct: 796 GIVILASI---KKDNLYIVTGVTNNLVNIITAKEIISY-FKEIKSIKGGGNSYFAEAVG 850 >gi|94994635|ref|YP_602733.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10750] gi|205830226|sp|Q1J5Z4|SYA_STRPF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94548143|gb|ABF38189.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10750] Length = 872 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 333/918 (36%), Positives = 503/918 (54%), Gaps = 74/918 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPD 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y +G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYNPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R LQ +A+ K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVA 893 +GG + +K + +A VA Sbjct: 852 MAGGSDASKIAELLAAVA 869 >gi|296117815|ref|ZP_06836398.1| alanine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306] gi|295969046|gb|EFG82288.1| alanine--tRNA ligase [Corynebacterium ammoniagenes DSM 20306] Length = 902 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 337/922 (36%), Positives = 501/922 (54%), Gaps = 67/922 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64 IR F + F +GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P Y T++ Sbjct: 17 IRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPYPNGLATSI 75 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT D Sbjct: 76 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWALLTNSVDDGGFG 131 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ RL++TVY +D+EA +W G+ ++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 132 LEPDRLWVTVYLDDDEAADIWHDKVGVPKERIQRMGMEDNYWSMGVPGPCGPCSEIYYDR 191 Query: 180 GECIPGGLPGSSE-EGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMGLER 232 G G+ G E + RY+EIWNLVFMQ E K IL PK +IDTGMG+ER Sbjct: 192 GPEY--GVEGGPEADDNRYMEIWNLVFMQNIRGEGDGKGNFEILGELPKKNIDTGMGVER 249 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-----NIVNHRVIVDHLRSSSFLIA 287 +A +LQ N Y+ DL +I +E+VTG YE N V RVI DH R++ LI Sbjct: 250 VACILQNVDNVYETDLLAPVIAEAEKVTGASYEDPKAERINDVRFRVIADHSRTAMMLIL 309 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P+NEGRGY+LRR++RR + ARLLG ++ + + M +YPE+ Q + I Sbjct: 310 DGVTPSNEGRGYILRRLVRRIIRSARLLGAQAEVLERFMNTIMDTMELSYPEIAQNRERI 369 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDI 404 +E++ F KTL+ G D V + GK ++ GD AF+L+DT+G P+D+ ++ Sbjct: 370 LRVALNEEKSFLKTLESGTHRFDEVAAAAKSQGK-TVVKGDEAFELHDTYGFPIDLTLEM 428 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D+ SF+ A+ +QR RA+A + G ++ + T F GY+ L Sbjct: 429 AAEAGL-DVDMDSFDAAMAQQRERAKADNRAKKHGHADETLYREWVDNQPTIFTGYEEL- 486 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 D KV+ +V+ GE V A G+++EV+ D +P YAE+ Sbjct: 487 -----ASDAKVI-----------------GLVRDGEKVTSAGEGEQIEVILDHSPLYAES 524 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G G L + DVQK + ++VH A V G L ++ +D Q R + Sbjct: 525 GGQMADRGRIFTGGTVLDVNDVQKIGKKLWVHKATVASGGLDLGSAVTAEVDQQWRHGAT 584 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 H+ATHL+H AL +LG Q GS P LRFD +++ +++ +L I N + Sbjct: 585 QAHTATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSADQLDEIALIANQAVD 644 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +L V T + E+A A GA AL G Y + VRVV + GG S LCGGTHV+ + + Sbjct: 645 SDLAVNTIETSLEEAKAMGAMALFGENYGNNVRVVEI----GGPFSIELCGGTHVAHSSQ 700 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + ++ ESS+ +G RRIEA +G A + + + +++ LKV ++ GR+ + Sbjct: 701 IGPVSVLGESSVGSGARRIEAYSGMDAFKYYSKEAALVDAVSKDLKVPSDDLPGRIAALT 760 Query: 765 EEYRKLQLIHAK-RKLQLNVEDLS-CHKIADVNFMSHIISE----VDSKELKSVMDALQK 818 ++ ++ + AK + QL + + D+N + + V + +L+++ L+ Sbjct: 761 DKLKQAEKEIAKLHQAQLQAKSAEFVAQAQDINGFKVLTLDLPQGVAAGDLRTLATDLRN 820 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ++Q+ II+L S +K + + + D+ +L + + G GGG+P MAQ Sbjct: 821 RMQNEDAIIVLAAASGDKLPFIAAATKSAVARGVKSGDIVKLFGEYV-DGRGGGKPDMAQ 879 Query: 877 SGGPNGNKADQAIAGVASFLKK 898 G N +Q A V F K Sbjct: 880 GAGNNPGGVEQGFAAVRDFADK 901 >gi|206901044|ref|YP_002250743.1| alanyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12] gi|206740147|gb|ACI19205.1| alanyl-tRNA synthetase [Dictyoglomus thermophilum H-6-12] Length = 866 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 341/918 (37%), Positives = 509/918 (55%), Gaps = 76/918 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M S IR F+++F KN H LPS+SL+P +DPTL+FT +GMVPFK F GQ P + Sbjct: 1 MMKSSDIRRKFIDYFVKNDHLHLPSASLVPSDDPTLLFTTAGMVPFKPYFLGQGVPPKRR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TTVQKC R D++ VG T RH TF EMLGNFSFG YFK AI A++ LTKE + Sbjct: 61 ITTVQKCFRT----TDIERVGITPRHLTFLEMLGNFSFGDYFKREAIGFAYEFLTKELGI 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQ 179 +L+I+VY+ED+EA+ +W K G+ ++I+R+ DNFW TGPCGPCSEI++D Sbjct: 117 PVSKLWISVYEEDDEAYDIWNKEIGIPKERIVRLGKEDNFWGPPGPTGPCGPCSEIYYDF 176 Query: 180 G-------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 G C PG + +R++EIWNLVFM + + LP+ +IDTGMGLER Sbjct: 177 GPKTKEEENCKPG------DPCDRFMEIWNLVFMAYYMDEDGKLSPLPQKNIDTGMGLER 230 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 + TV++ +N ++ DLF +IQ + + E ++ R+I DH+R +FL+ DG++P Sbjct: 231 ITTVVEGVSNVFETDLFLPIIQEIKNII----ENSDPTTERLISDHIRGITFLMGDGVVP 286 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RR++ A G EP + L+P + M AYPELI K I++ L Sbjct: 287 TNEGRGYVLRRLIRRSLRRAYKHGIKEPFLYKLVPVVVEIMKEAYPELIDRKDYIQKVLI 346 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E+F +TL++GL LL+ + +++++G+ AFKLYDT+G P+++ Q+I G Sbjct: 347 REEEQFLRTLEQGLALLEDYFKKVS-NKVVSGEFAFKLYDTYGFPIELTQEIAGEEGFK- 404 Query: 413 IDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 IDI FN+ +EEQR +ARA S + E++++ T+F+GYD L Sbjct: 405 IDIDEFNKYMEEQREKARASMEEKLEESFISLSDEEVYYM--RNLPKTEFVGYDTLETE- 461 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S+++ + G+ + + G++V + D+TPFYAE GGQ Sbjct: 462 ---------------------SNVLFFV--GGKHGKNILEGEEVYFLMDKTPFYAEGGGQ 498 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 + D G + ++I DV+K E +H V +G + + +D + R +H Sbjct: 499 VSDKGKVYNSEVEVEILDVKKLGEDFIIHRGKVLKGEFKEGQIVKAEVDKEKRYHTMRHH 558 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL LG+HV Q+GS ++P+ LRFD TH P++ +LK IE VN+ I N Sbjct: 559 TATHLLHSALREYLGTHVMQSGSLVSPEFLRFDFTHHSPLSYEDLKIIEKKVNENILANH 618 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V E+A GA AL KY VRV+ ++ S LCGGTHV TGEI Sbjct: 619 KVEKFWTTLEEARRMGAIALFTEKYQKNVRVIKIDN-----ISMELCGGTHVDYTGEIGS 673 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EI 763 YIV E I +GIRRI A+ G +A + ++E + ++ L S V +VE E+ Sbjct: 674 FYIVKEEGIGSGIRRIFAVCGLKAWEYQKRKEEIVNKVSLLLNSSLDEVHIKVEKLLNEL 733 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQ 821 E+ RK++ + K ++ E L + + ++ S I + +D + +K + D L+ K Sbjct: 734 KEKERKIKDLEEKV-IKREAEVL-LNNVDKIDNFSLICASLDMENDAIKRLGDYLKNK-D 790 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 +IML + K ++V + L+ + A + L + G GGG+ +AQ P Sbjct: 791 DNLIMLFFRPLDNKLVGTVMVGKKLISKGITAKKIVDLIGERF-NGKGGGKDTLAQISLP 849 Query: 881 NGNKADQAIAGVASFLKK 898 N I + FLK+ Sbjct: 850 KTN-----IEEIKGFLKE 862 >gi|313890705|ref|ZP_07824330.1| alanine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026] gi|313120806|gb|EFR43920.1| alanine--tRNA ligase [Streptococcus pseudoporcinus SPIN 20026] Length = 873 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 338/917 (36%), Positives = 501/917 (54%), Gaps = 74/917 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AEIRQMWLDFWKSKGHAIEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FD + Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-- 180 +LY+T Y D +++ W L D I +NFW + GP GP +EIFFD+G Sbjct: 123 DKLYMTYYPADTDSYNRW---IALGVDPSHLIPLEENFWEIG-AGPSGPDTEIFFDRGPA 178 Query: 181 ---ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERMA 234 E I L E +RYIEIWN+V QF K E LP +IDTG GLER+ Sbjct: 179 FDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPKVPRSEYKELPSKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +IQ E+++G Y+ G+N+ + +VI DH+R+ SF I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIQEVEKLSGKTYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG TE + L+ + M S YPE+++ + IE+ ++ Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGITETFLYKLVVTVGQIMTSYYPEILEKRDFIEKIIK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ +++ G Sbjct: 358 REEETFARTIDAGSGHLDQLLTQLKEAGKDTLEGKDI-FKLYDTYGFPIELTEEMAEDAG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F A++EQ+ RARA + GS G ++ S+F Sbjct: 417 YR-VDHEGFKAAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIVEPSEFS 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 ++ + + I + N ++ E+V E GQ + +VFD+TPFYAE GGQ+ Sbjct: 463 YQEETLDAKLSVIIVDN----------ERSEMVSE---GQAL-LVFDRTPFYAEMGGQVA 508 Query: 530 DTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G A GD + ++ DVQK G +H V L L ID++ R + N Sbjct: 509 DHGLIKNAAGD-VLAKVVDVQKAPNGQALHTVEV-LASLSINAIYTLDIDHKRRYAVEKN 566 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL ++G H +Q GS LRFD TH + +T+ EL+ IE+ VN I Sbjct: 567 HTATHLLHAALHKVIGQHATQAGSLNEETFLRFDFTHFEAVTAEELRRIEEEVNQQIWNA 626 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 L V T + + A + GA AL G KY VRVV++ G +S+ LCGGTH+ +T EI Sbjct: 627 LSVTTVETDVDTAKSMGAMALFGEKYGKLVRVVTI-----GDYSAELCGGTHLGNTSEIG 681 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWE 765 L IV E I +G RRI A+TGQ+A +++ LK +A+ LK Q V +V + E Sbjct: 682 LFKIVKEEGIGSGTRRILALTGQQAFEAFRQREDALKEIAANLKAPQLKEVPAKVASLSE 741 Query: 766 EYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820 + R LQ + + K + + N ++I +EV D+ L++ D ++K Sbjct: 742 QVRDLQKENHELKEKAAAAQAGDLFKDVKKANGHTYIATEVAVADAGALRTFADNWKQKD 801 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S +++LV E K +VL+ + + +A +L + A ++ G GGG+P MA +GG Sbjct: 802 YSDVLVLVAAIGE-KVNVLVASRDKAV---HAGNLIKSLAPIV-SGRGGGKPDMAMAGGS 856 Query: 881 NGNKADQAIAGVASFLK 897 + + + V LK Sbjct: 857 DAGQIQALLLAVPELLK 873 >gi|117928537|ref|YP_873088.1| alanyl-tRNA synthetase [Acidothermus cellulolyticus 11B] gi|205829965|sp|A0LUJ2|SYA_ACIC1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|117649000|gb|ABK53102.1| alanyl-tRNA synthetase [Acidothermus cellulolyticus 11B] Length = 886 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 338/906 (37%), Positives = 493/906 (54%), Gaps = 72/906 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I +L FF+K H ++PS+ L+ +DP L+F +GM PFK F G + T+V Sbjct: 4 AEIARRWLAFFEKRDHVVVPSTPLV-ADDPELLFVVAGMQPFKPYFRGDAPAPWPRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QK +R D+D VG+T RH TFF M GNFSFG YFKE AI LAW+LLT + Sbjct: 63 QKVLRT----PDIDEVGKTTRHATFFHMCGNFSFGDYFKETAIPLAWELLTTPVADGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 RL++TVY +D+EA +W ++ GL D+I R DNFWSM GPCGPCSEI++D+ Sbjct: 119 FAPDRLWVTVYTDDDEAADIWHRVVGLPVDRIQRRGMADNFWSMGVPGPCGPCSEIYYDR 178 Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLER 232 G E GG P ++EE RY+E+WNLVFMQ+E + N LP +IDTGMGLER Sbjct: 179 GPEFGVGGGPVANEE--RYLEVWNLVFMQYERGPGGAKDNYPILGELPAKNIDTGMGLER 236 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGI 290 MA +LQ N Y+ID + ++ + ++TG +Y G N V R++ DH+R+ + L+ DG+ Sbjct: 237 MAAILQGVDNIYEIDTTRPILDKAAELTGQRYGSGGQNDVRLRMVADHIRAITMLVNDGV 296 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +P+NE RGYVLRR+MRR + RLLG EP M L+ YPEL + I Sbjct: 297 VPSNEERGYVLRRLMRRVVRAMRLLGAREPTMHELVATAIAVFTPQYPELSRNAERIFAV 356 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+ F TL G + + G +L+G+ AF L+DT+G P+D+ ++ +G+ Sbjct: 357 ADGEEASFFSTLAAGTARFEAAVREAGGG-VLSGEQAFVLHDTYGFPIDLTLEMAAEQGV 415 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-EKYG-ATQFIGYDLLRGSKF 468 +D F + EQR RA+ + +G ++ + E G +F GY G Sbjct: 416 T-VDEEGFRALMAEQRRRAKEDAERRKTGAADRAAYRAAAELLGRPVEFTGYTERSGE-- 472 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 ++V+ ++ G V A +GQ+VEVV D+TPFYAE GGQL Sbjct: 473 ---------------------AVVRGLLVDGAAVPAAHAGQRVEVVLDRTPFYAEGGGQL 511 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G R+ + DVQ+ G+ VH V G + +++ ID R +S +H+ Sbjct: 512 PDHGVLEFAAGRIDVDDVQQPLPGLIVHRGRVADGEITVGETVLARIDVDRRWAISRSHT 571 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH++H A LG +Q GS P RFD T+ + + L +E+ VND++ +L Sbjct: 572 ATHMVHKAFREFLGDTAAQAGSENAPGRFRFDFTNPSAVPPSVLGEVEERVNDLLLHDLE 631 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V +IM +++AIASGA A+ G KY D+VRV+S+ G S LCGGTHV TG + ++ Sbjct: 632 VTAQIMRQQEAIASGAIAMFGEKYGDQVRVISI-----GDWSRELCGGTHVPHTGHLGVI 686 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQ-------DEKLKSLASFLKVSQGNVVGRVE 761 IVSESSI AG+RRIEA+ G A +L + E+LK+ A L ++ R+ Sbjct: 687 KIVSESSIGAGVRRIEALVGLDAYRYLAREAVLVSQLAEQLKAPADELPDRIAGMLARLR 746 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKS------VMDA 815 + +E KL+ + +L L+ ++ DV ++ + + VD + + D Sbjct: 747 DAEKELEKLR----QARLLAEAPRLAAARV-DVGGLAVVAARVDGDGVDADGLRLLATDL 801 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 Q+ S +++L G++ + V V +E L A +L ++AK L GGGGGGRP A Sbjct: 802 RQRLGGSAVVVLAGVAGGRPVVVAAVGSEALARGVKAGELVGVAAKRL-GGGGGGRPDFA 860 Query: 876 QSGGPN 881 Q GG N Sbjct: 861 QGGGTN 866 >gi|169829321|ref|YP_001699479.1| alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41] gi|168993809|gb|ACA41349.1| Alanyl-tRNA synthetase [Lysinibacillus sphaericus C3-41] Length = 842 Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust. Identities = 321/857 (37%), Positives = 468/857 (54%), Gaps = 83/857 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +LEFF++ GH PS+ L+P NDP+L++ NSG+ K F G+ P +T QK Sbjct: 27 IRQMYLEFFKEKGHHHEPSAPLVPINDPSLLWINSGVATLKPYFDGRVIPDNPRITNAQK 86 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 +R ND++NVG+T RHHTFFEMLGNFS G YFK+ AI AW+ LT K D Sbjct: 87 SIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKKEAIHYAWEFLTDKKWMGFDPEL 142 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180 L IT++ ED+EA+ +W + G+ +++IR+ N FW + E GP GP SEIF+D+G Sbjct: 143 LSITIHPEDQEAYDVWHQEIGIPEERLIRLEGN--FWDIGE-GPSGPNSEIFYDRGVEYG 199 Query: 181 --ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E P PG E ERY+EIWNLVF QF LPK +IDTGMGLER+ +V+Q Sbjct: 200 SDENDPEMYPGG--ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQ 257 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--------------HRVIVDHLRSSSF 284 N+D DLF +I+ E+ KY+ + V+ +VI DH+R+ +F Sbjct: 258 NVPTNFDTDLFMPIIEKIEEFANRKYKRPSEVDLNEIFGSEEDINTPFKVIADHIRTVAF 317 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGYVLRR++RRA+ YA+ +G +P M L+P + M YPE+ + Sbjct: 318 AIGDGALPSNEGRGYVLRRLLRRAVRYAKQIGIEKPFMFELVPTVGKIMEDFYPEVTEKC 377 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIM 401 I+ +++E+ RF +TLD GL + + V G D I D AF+LYDT+G P+++ Sbjct: 378 EFIQRVIKNEEIRFHETLDGGLAIFNEVAESQKAAGHDFIPGAD-AFRLYDTYGFPIELT 436 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 ++ G+ +D F A+EEQR RARA + S + L A++F+G+D Sbjct: 437 EEYAEEVGMK-VDHEGFETAMEEQRERARAARQDVDSMQVQNE--VLANLTVASEFVGFD 493 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L + + + A++ G++ + A GQ+ V+ +TPFY Sbjct: 494 TLVAN-----------------------TEIAAMIVNGQVEKVASEGQEALVILAKTPFY 530 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AE GGQ+ D+G D + DVQK G +H IVE G + E ++ + +R Sbjct: 531 AEMGGQIADSGIISNDSFTAVVKDVQKAPNGQPLHTVIVESGEMHVEDAVQAIVHRDDRN 590 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATH++ AL +LG HV+Q GS + PD LRFD +H +T EL+ IE VN+ Sbjct: 591 LIIKNHTATHIMQRALKDVLGDHVNQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIVNE 650 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + ++ VV M + A A GA AL G KY D VRVVS+ G +S LCGG HV Sbjct: 651 KVWDDIEVVIEEMAIDQAKAKGAMALFGEKYGDVVRVVSI-----GDYSIELCGGIHVKR 705 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 + EI IVSE I AG RRIEA+TG+ A + ++ L A+ LK + ++V +V+ Sbjct: 706 SSEIGFFKIVSEGGIGAGTRRIEAVTGKVAYEVVKEEEALLNDAAALLKANPKDIVTKVQ 765 Query: 762 EIWEEYRKLQL-----------IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 + +Y++LQ H+ + + + CH +F D+ L+ Sbjct: 766 ALQGDYKELQRDNEALSQKIANAHSWGNCRCSTNNWRCHS----SFYKS--RSKDNNLLR 819 Query: 811 SVMDALQKKIQSGIIML 827 +MD L+ + +I+L Sbjct: 820 QMMDDLKALMPKAVIVL 836 >gi|254430394|ref|ZP_05044097.1| alanyl-tRNA synthetase [Cyanobium sp. PCC 7001] gi|197624847|gb|EDY37406.1| alanyl-tRNA synthetase [Cyanobium sp. PCC 7001] Length = 907 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 322/791 (40%), Positives = 462/791 (58%), Gaps = 54/791 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63 + IR+ FL F+++ GH +PS+SL+P +DPT++ T +GM+PFK +F GQ E+P +A T+ Sbjct: 20 ADIRSAFLAFYEQRGHRRMPSASLVP-DDPTVLLTIAGMLPFKPVFLGQAERPAPRA-TS 77 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AIQ AW+L T+ F L Sbjct: 78 SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIQWAWELSTEVFGLSPA 133 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGEC 182 L ++V+ ED EA +W+++ G++ +IIR+ DNFW+ TGPCGPCSEI++D + E Sbjct: 134 NLVVSVFREDHEAEAIWREVVGVNPRRIIRMDEADNFWASGPTGPCGPCSEIYYDFRPEL 193 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G+ E+ R+IE +NLVFMQ+ + + L SIDTGMGLERMA +LQ N Sbjct: 194 GDDGI--DLEDDSRFIEFYNLVFMQYNRDAEGSLTPLANRSIDTGMGLERMAQILQGVPN 251 Query: 243 NYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL LI+ + + G+ Y E + +VI DH R+ + LI DG+ +N GRGY Sbjct: 252 NYETDLIYPLIETAAALAGVDYRQLEQKGQTSLKVIGDHSRAITQLIGDGVSASNLGRGY 311 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 +LRR++RR + + RLLG P + + A +M AYP+L + + +I L E+ RF Sbjct: 312 ILRRLLRRVVRHGRLLGIDRPFLKTMGEAAIAQMRQAYPQLDERRTVILAELEREEGRFL 371 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 +TL+RG LL VL+ G +I +GD AF+LYDT+G PL++ Q+I +GL +D+ F Sbjct: 372 ETLERGEKLLADVLA-TGPRQI-SGDQAFELYDTYGFPLELTQEIAEEQGLT-VDLEGFE 428 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 A+E QR RA+A ++ + E I ++ AT F GY+ L + Sbjct: 429 AAMEAQRQRAKAAAVSIDLTLQEAI-DAVAADLEATAFRGYEAL--------------EH 473 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 P S V A+V GE E A +G V++V D TPFY E GGQ+GD G +G G Sbjct: 474 P---------SCVLALVVNGEPAERAAAGDAVQIVLDSTPFYGEGGGQVGDRGVLLGGGD 524 Query: 540 RLQI-------TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + + + +FVH VERG L + +D RR+ NH+ATHL Sbjct: 525 QTAVDAGVIVSIEAVSRNRSVFVHSGRVERGALAVGDLVTARVDGACRRRAQANHTATHL 584 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL ++ + Q GS + D LRFD + +T EL+ IE +N I++ +V Sbjct: 585 LQAALKQVVDPDIGQAGSLVDFDRLRFDFHCPRAVTPEELERIEALINAWISEGHALVVE 644 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 M + A A+GA A+ G KY + VRVV V S LCGGTHV++T EI + IV+ Sbjct: 645 EMAIDQARAAGAVAMFGEKYGEVVRVVDVP-----GVSMELCGGTHVANTAEIGVFKIVA 699 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ- 771 ES + AGIRRIEA+ G S+L +D +K+L K G +V RV + ++ + Q Sbjct: 700 ESGVAAGIRRIEAVAGPAVLSYLQERDAVVKALGDRFKAQPGEIVERVTALQDDLKASQK 759 Query: 772 -LIHAKRKLQL 781 L A+++L L Sbjct: 760 ALASARQELAL 770 >gi|94990711|ref|YP_598811.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10270] gi|205830225|sp|Q1JG77|SYA_STRPD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|94544219|gb|ABF34267.1| Alanyl-tRNA synthetase [Streptococcus pyogenes MGAS10270] Length = 872 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 332/918 (36%), Positives = 502/918 (54%), Gaps = 74/918 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R Q +A+ K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVA 893 +GG + +K + +A VA Sbjct: 852 MAGGSDASKIAELLAAVA 869 >gi|300811577|ref|ZP_07092061.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497437|gb|EFK32475.1| alanine--tRNA ligase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 877 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 338/918 (36%), Positives = 507/918 (55%), Gaps = 70/918 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N S R FL+FF ++GH ++ S+SLIP +DPTL++ NSG+ K F G P + +T Sbjct: 5 NSSEFRQMFLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRIT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 + QK +R ND++NVG+T RH T FEMLGNFS G YFKE AI AW+ LT DL Sbjct: 65 SSQKSIRT----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDL 120 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D+ +LY+TVY +D EA ++W ++ GL I+++ DNFW + E GPCGP SEIF+D+G Sbjct: 121 DKDKLYVTVYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRG 177 Query: 181 -------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E P PG E RY+EIWN+VF +F P +IDTGMGLER+ Sbjct: 178 QENNDVPEDDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERV 235 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 ++LQ+ N++ DLF +I A+E+++ G KY N + ++ ++I DH+R+ SF I DG Sbjct: 236 LSILQDAPTNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGA 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 LP N GRGYVLRR++RRA R LG + L+P + M S YPE+ I + Sbjct: 296 LPGNTGRGYVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKV 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +++E++RFG TL+ GL LLD ++ +D+ ++G AFK++DT+G P ++ + + Sbjct: 356 VKNEEDRFGATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDK 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ +E Q+ RAR L S G+ ++ +K+K + Sbjct: 416 GLK-VDKDGFDAEMEAQKERARKARGNLQSMGSQDETLMKIKDK---------SVFEYGV 465 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + +E S +V IV ++V++A G+K ++FD+TPFYAE GGQ Sbjct: 466 YEEE-----------------SQLVDIIVDD-KLVDKA-DGEKATLIFDKTPFYAERGGQ 506 Query: 528 LGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 + D G L ++ DVQ +H V +++ + + L ID R L Sbjct: 507 VADHGDIYDQEGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQ-TYKLKIDRARREGLRH 565 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +HSATHLLH AL +LG H Q GS + PD LRFD T PIT ELK++E VN+ I + Sbjct: 566 SHSATHLLHAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWE 625 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + E GA AL KY D+VRVV ++ S CGGTH +T +I Sbjct: 626 AIQVKTTETDPETGKKMGALALFDGKYTDKVRVVQMD-----DFSIEFCGGTHCDNTSQI 680 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN-VVGRVEEIW 764 + I+SE +I AG+RRIEA+T + A +L + + L + + +K ++ + + ++ + Sbjct: 681 GVFKIISEQAIGAGVRRIEAVTSKLAYEYLASRSDILDQIQAQVKATKADGIQSKIASLQ 740 Query: 765 EEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 EE R + +A + Q+N + D+ ++ I +L+ + D + + Sbjct: 741 EELRSAEKQNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSE 800 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 +S +++L G E KA++LI + + LD+ A DL + A + GGGGGGRP+MAQ+G Sbjct: 801 GKSDVLIL-GAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIF-GGGGGGRPNMAQAG 858 Query: 879 GPNGNKADQAIAGVASFL 896 G AI S L Sbjct: 859 GKKPEGLQDAIDAAVSQL 876 >gi|326336584|ref|ZP_08202753.1| alanine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691249|gb|EGD33219.1| alanine--tRNA ligase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 877 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 326/869 (37%), Positives = 477/869 (54%), Gaps = 77/869 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ GH ++PS+ ++ NDPTLMFTN+GM FK F G KP + V QK Sbjct: 6 IRQQFLKFFESKGHVIVPSAPMVIKNDPTLMFTNAGMNQFKEYFLGNAKPKQKRVVDTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VGR HHT FEMLGN+SFG YFK AI AW+LLT+ + + + LY Sbjct: 66 CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAISWAWELLTEVYRIPKENLY 125 Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +TV++ D+EA+ +WK+ ++ D I+ DNFW M + GPCGPCSEI D Sbjct: 126 VTVFEGSPEEGVPLDQEAYDIWKE--RIAEDHILLGNKKDNFWEMGDQGPCGPCSEIHVD 183 Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + E +PG + + + IEIWN VFM+F ++ LP ++DTGMG ER+ Sbjct: 184 IRSEEEKAEIPGRDLVNRDHPQVIEIWNNVFMEFNRKADGSLEKLPAHNVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI--------VNHRVIVDHLRSSSFL 285 VLQ+K +NYD D+F LI E++T KY G N+ V RV+ DH+R+ +F Sbjct: 244 MVLQKKQSNYDTDVFTPLIHKVEEITKSKYSNGTNVTPEQEEINVAIRVVSDHIRAVAFA 303 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG LP+N G GYV+RRI+RRA+ Y LG EP + L+ L +MGS +PEL + + Sbjct: 304 IADGQLPSNNGAGYVIRRILRRAIRYGFTFLGQKEPFIYKLVETLSKQMGSTFPELEKQQ 363 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 LI ++ E+ F +TL++GL++LD V+ D+ L+G AF+LYDT+G P D+ I Sbjct: 364 FLIMSVIKEEEASFLRTLEQGLLMLD-VMIQNNPDKQLSGSKAFELYDTYGFPKDLTALI 422 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L +G+ +D F + L++Q+ R+RA + W L++ +FIGYD L+ Sbjct: 423 LSEKGMT-LDERGFEENLQKQKERSRA-----AAQVKADDWVILRDD-EEEEFIGYDTLK 475 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + RKV QK G ++VF+ TPFY E Sbjct: 476 AIVRLVKYRKVESQK---------------------------DGTLYQLVFNTTPFYPEG 508 Query: 525 GGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G +G + I D KK + +H I E + +R Sbjct: 509 GGQVGDKGTLQAANGELIYILDT-KKENNLIIH--IAEHLPENLNDPFQAEVASLSRTLA 565 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS + P+ LRFD +H +T EL+ +E VN I Sbjct: 566 EANHSATHLLHQALREVLGTHVEQKGSHVAPESLRFDFSHFAKLTQEELRKVERLVNKRI 625 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + +P+ R + AI SGA AL G KY D VR++ S LCGGTHV +T Sbjct: 626 FEKIPLEEHRNIPIRQAIESGAMALFGEKYGDHVRMIQFG------ESKELCGGTHVKNT 679 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ---GNVVGR 759 G+I I+SE ++ AGIRRIEAIT A + Q+ L+ + + LK Q +++ Sbjct: 680 GDIWFFKIISEGAVAAGIRRIEAITSAGALKYFADQEALLEGIKASLKNPQEPIKSIINL 739 Query: 760 VEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE--VDSKELKSVMDALQ 817 EE + +++++ + ++ QL E L I +N + + + +D LK + L Sbjct: 740 QEENAQLHKEIEQLKREQAKQLK-EGLKKEFIP-INGIQCLTKQLNLDLATLKDLAFMLG 797 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDL 846 ++++ I+ + + KA +L + ++L Sbjct: 798 EEVKDAFILFGTVQEGGKAMLLCYINKEL 826 >gi|324995376|gb|EGC27288.1| alanine--tRNA ligase [Streptococcus sanguinis SK678] Length = 872 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 340/930 (36%), Positives = 505/930 (54%), Gaps = 92/930 (9%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R +L+F+ GH + PS SL+P NDPTL++ NSG+ K F G P Sbjct: 1 MKQMSSAQVRQMWLDFWATKGHAVEPSVSLVPVNDPTLLWINSGVATLKKYFDGTIIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ A++LLT Sbjct: 61 PRITNAQKAIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWAYELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D++++ W + G+ +I I DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDKDSYNRWIAM-GVEPSHLIPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGVRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPHKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+ V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+RS SF I Sbjct: 233 GLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYDQDGDNM-SFKVIADHIRSLSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG EP + L+P + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLYKLVPTVGKIMESYYPEVLEKQDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDI 404 IE+ ++SE+E F +TL G + +++ L ++ G AFKLYDT+G PL++ ++I Sbjct: 352 IEKIIKSEEESFARTLHSGQHFAETIVADLKAKGQTVIAGQDAFKLYDTYGFPLELTEEI 411 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAH-----SLGLGSGTTEKIWFSLKEKYGATQFIG 459 + +D F A++EQ+ RARA S+G+ + T + I Sbjct: 412 -AEEAVMTVDRAGFEAAMKEQQDRARASVVKGGSMGMQNETLQAITVE------------ 458 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S F E ++ + + AIV VE SG ++F +TP Sbjct: 459 ------SAFNYEKEELTAE-------------LLAIVADDAAVESVESGTAA-LIFAETP 498 Query: 520 FYAEAGGQLGDTGCAIGDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ+ D G L Q+ DVQK G +H V L S L ID+ Sbjct: 499 FYAEMGGQVADHGQIFDAAGNLVAQVRDVQKAPNGQPLHTVEV-LAPLALGQSYKLEIDH 557 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ATHLLH AL +LG+H +Q GS + LRFD TH + +T+ EL++IE Sbjct: 558 SRRHRVMKNHTATHLLHAALHNVLGNHATQAGSLNEVEFLRFDFTHFQAVTAEELRAIEQ 617 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I + L + T + + A GA AL G KY VRVV++ G +S LCGGT Sbjct: 618 EVNEKIWEALAIETVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGT 672 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNV 756 HV +T EI + IV E I +G RRI A+T + A ++E LK++A+ LK Q V Sbjct: 673 HVGNTSEIGIFKIVKEEGIGSGTRRILAVTSKEAFEAYREEEEALKAIAATLKAPQIKEV 732 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQL----------NVEDLSCHKIADVNFMSHIISEVDS 806 +VE + E+ R+LQ +A+ K + NV++ + H +F++ +S D+ Sbjct: 733 PHKVEALQEQLRQLQKENAELKEKAAAAASGEVFKNVQEANGH-----SFIASQVSVSDA 787 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866 L++ D ++K S +++LV +K + T+D+ +A +L + A ++ G Sbjct: 788 GALRTFADTWKQKDYSDVLVLVAAIGDKVNVLAASKTKDV----HAGNLIKELAPIV-DG 842 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGG+P MA +GG + +A VA L Sbjct: 843 RGGGKPDMAMAGGSKQSAIPALLAAVAEKL 872 >gi|300870855|ref|YP_003785726.1| alanyl-tRNA synthetase [Brachyspira pilosicoli 95/1000] gi|300688554|gb|ADK31225.1| alanyl-tRNA synthetase [Brachyspira pilosicoli 95/1000] Length = 864 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 310/846 (36%), Positives = 474/846 (56%), Gaps = 60/846 (7%) Query: 20 HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79 H + SSSLIP +DP+L+FT +GM+ FK + G +K Y V T+QKC R +DL+N Sbjct: 19 HAIEKSSSLIPIDDPSLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRL----SDLEN 74 Query: 80 VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138 +G+T RHHTFFEM GNF F G YFK+ AI+ AW+ T+ L R+Y+++Y++D++AFK Sbjct: 75 IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPVERIYVSIYEKDDDAFK 134 Query: 139 LWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195 +W + G+ +KI+R+ DNFW A ++G CGPCSE++ D GE G P + E Sbjct: 135 IWNEHIGIPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194 Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255 RY+E WNLVF +F Q L + IDTGMGLER+ ++Q +NY D+ K ++ A Sbjct: 195 RYLEFWNLVFNEFFQDVDGNLTPLKNVGIDTGMGLERLCYIMQGVESNYQTDVMKPIVDA 254 Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 +KYEGNN ++ DHLR+ F++A+G P+NEGRGYVLRR++RRA+ A L Sbjct: 255 ILNKLNVKYEGNNKTKINLLADHLRALVFVLAEGCKPSNEGRGYVLRRLLRRALKTANDL 314 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 G+ + L A+ Y L + + I++ L+ E+ +F T+ G+ L V+ Sbjct: 315 GHKGAFLNELTSAVINVYKDIYDYLPKEEENIKKILKEEENKFLSTISAGMNKLYNVMEE 374 Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435 + ++++G AF L+DT+GLP DI ++ G +D F A+EEQ+ R+R Sbjct: 375 NKESKVISGKDAFMLFDTYGLPFDITEEEANDHGFT-VDKKGFEDAMEEQKKRSR----- 428 Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495 G+G +K F E Y T+++G EDR L NG+ S + A+ Sbjct: 429 -GTGEDKKSKFGFVENY-ETKYVG-----------EDRD--------SLINGIKSKIVAL 467 Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIF 554 + GE +E+ S V V+ + +PFY E GGQ+GD G I G +L++ D QKK E Sbjct: 468 YENGE-KKESASSSNVAVITESSPFYGEMGGQVGDNGFIEISSGEKLKVLDTQKK-ENTI 525 Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614 +H L+ + L +++ R + NH+ATH+L L LG+H++Q GS + Sbjct: 526 IHIVDCGNKTLKVGEEIKLIVNFDRRSAIRKNHTATHILQKVLELTLGNHINQAGSFVCE 585 Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674 D LRFD TH I L +IE+ VN+I+ +++P V + M +E+AIASGA AL G KY D Sbjct: 586 DYLRFDFTHPDSINEETLINIENKVNEIVFKSMPAVIKYMPKEEAIASGAKALFGEKYPD 645 Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734 VR++ + G S LCGG+H+++T E+ +IVSE S+ +G+RRIEAITG A Sbjct: 646 TVRILDI----GEGFSVELCGGSHLTNTSEVGYFHIVSEGSVASGVRRIEAITGLNAARE 701 Query: 735 LMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQ--------LNVED 785 K+KSL+ L ++ + R E + E +KLQ + + K N ED Sbjct: 702 ATNLFNKVKSLSHILNANKIDELTTRAENLQTEIKKLQKENKQLKTSGSSSKAFIDNCED 761 Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845 L+ K ++ F + D K+++ D ++++++ I ++ + S+++ VT Sbjct: 762 LNGIKFYNLEF------DEDIKDIRLYADTIKERVKDSIAFMISKTNN---SIIVQVTGK 812 Query: 846 LLDRFN 851 L N Sbjct: 813 ALKEKN 818 >gi|311894842|dbj|BAJ27250.1| putative alanyl-tRNA synthetase [Kitasatospora setae KM-6054] Length = 888 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 343/930 (36%), Positives = 517/930 (55%), Gaps = 83/930 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L FF++ GH ++PS+SL+ +DPTL+ N+GMVPFK F G+ KP + T+V Sbjct: 4 AEIRRRWLRFFEERGHTVVPSASLV-ADDPTLLLVNAGMVPFKPYFLGEIKPQFSRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG+T RH +FF+M GNFSFG YFKE AI+ AW+LLT + Sbjct: 63 QKCVRT----LDIEEVGKTTRHGSFFQMCGNFSFGDYFKEGAIKFAWELLTSPVADGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L+ RL+ITVY +D+EA ++W+++ G+ A++I R+ DNFWSM GPCGPCSEI +D+ Sbjct: 119 LEPERLWITVYQDDDEAERIWREVIGVPAERIQRLGMKDNFWSMGVPGPCGPCSEINYDR 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERF----ILPKMSIDTGMGLERM 233 G G G + GERY+EIWNLVFMQ+E+ + ++ F LP +IDTG+GLER+ Sbjct: 179 GPAY-GEEGGPAVNGERYLEIWNLVFMQYERGHGDGKDGFEILGDLPSKNIDTGLGLERL 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291 A VLQ N ++ID + ++ + ++TG Y + + V+ RV+ DH R++ L+ DG+ Sbjct: 238 AAVLQGVDNLFEIDTSRMILDRAAELTGHTYGADHRSDVSLRVVTDHFRTALMLVGDGVT 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRRI+RRA+ RLLG TEP+ L+ M YPEL + IE + Sbjct: 298 PGNEGRGYVLRRILRRAIRNMRLLGATEPVAKDLIDISIKAMAPQYPELETDRKRIETVV 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G LLD ++ + +L+G+ AFKL+DT+G P+D+ ++ +G Sbjct: 358 VAEENAFLQTLRSGTSLLDAAVTETKQSGGAVLSGEQAFKLHDTYGFPIDLTLEMAEEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKF 468 L +D F + ++EQR RA+A + +G + + + ++ GA+ F GY Sbjct: 418 LQ-VDEAGFRRLMQEQRDRAKADAKAKKTGHADVAAYREVADRAGASVFTGYAH------ 470 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 T G +++V +V G A G +VE++ D+TPFYAE GGQL Sbjct: 471 ----------------TEGEATVVGLLVD-GVPSPAATEGDEVELILDRTPFYAEGGGQL 513 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + G +++ DVQ+ G+ VH V G + S TID RR +S H Sbjct: 514 ADHGRIRLDSGAVVEVRDVQQPVPGVIVHSGGVLFGEVVLGASAYATIDTDRRRAVSRAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL H AL LG +Q GS P RFD + + L +E +N+++ + L Sbjct: 574 SATHLTHQALRDALGPTAAQAGSENAPGRFRFDFGSPAAVPGSVLTDVEQKINEVLVREL 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V +M ++A GA A+ G KY D VRVV++ G S LCGGTHV +T ++ L Sbjct: 634 DVTAEVMTMDEARKQGAIAMFGEKYGDSVRVVTI-----GDFSKELCGGTHVGNTAQLGL 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESSI +G+RR+EA+ G A L + + L +K GR EE+ E Sbjct: 689 VKLLGESSIGSGVRRVEALVGVDAYKFLAREHTVVAQLTELVK-------GRPEELPE-- 739 Query: 768 RKLQLIHAKRK-LQLNVEDLSCHKI-----------ADVNFMSHIISEV----DSKELKS 811 K+ + AK K + +E K+ DV ++ + + V + EL+ Sbjct: 740 -KISGMLAKLKDAEKEIERFRAEKVLQAAAGLAEGAEDVRGVALVAARVGDGTGADELRK 798 Query: 812 VMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 ++ ++ ++ S ++ ++ ++ +V I ED R A +L R +AK L GGGG Sbjct: 799 LVLDVRARLGSRPAVVAAFTVANDRPLTV-IATNEDARGRGIKAGELVRAAAKTL-GGGG 856 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GG+ +AQ GG N AI V + + + Sbjct: 857 GGKDDVAQGGGTNPAAVADAIEAVRALVAE 886 >gi|319952367|ref|YP_004163634.1| alanyl-tRNA synthetase [Cellulophaga algicola DSM 14237] gi|319421027|gb|ADV48136.1| alanyl-tRNA synthetase [Cellulophaga algicola DSM 14237] Length = 871 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 347/922 (37%), Positives = 497/922 (53%), Gaps = 89/922 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+ FLEFF+ H+++ S+ ++ +DPTLMFTN+GM FK F G P VT QK Sbjct: 6 IRSKFLEFFKDKEHKIVASAPMVIKDDPTLMFTNAGMNQFKEFFLGNTVPKDTRVTDTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG+ HHT FEMLGN+SFG YFKE AI AW+ LT +D+ LY Sbjct: 66 CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKEEAITWAWEFLTDVCKIDKTSLY 125 Query: 127 ITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 +TV+ D+D EA LWK I + +I+ DNFW M + GPCGPCSEI Sbjct: 126 VTVFEGSKDADNLDQDSEALALWKNI--VPESQILFGNKKDNFWEMGDQGPCGPCSEIHV 183 Query: 178 D----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 D + + G + + + +EIWNLVFMQ+ ++ + LP +DTGMG ER+ Sbjct: 184 DIRSAEEKAKVSGASLVNNDHPQVVEIWNLVFMQYNRRANGQLESLPAKHVDTGMGFERL 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGIL 291 V+Q +NYD D+F +I+ E +T Y + ++ RVI DH+R+ SF I+DG L Sbjct: 244 CMVMQGVQSNYDTDVFTPIIREIEAITKSTYGKDEKIDIAIRVIADHIRAVSFSISDGQL 303 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RRA+ Y L EP M L+ LC MG+A+PEL K LIE Sbjct: 304 PSNTGAGYVIRRILRRAIRYGFTFLDTKEPFMYRLVNVLCDSMGAAFPELKNQKQLIENV 363 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ F KTLD+GLVLLD ++S+ +I++G AF+LYDT G P+D+ IL RGL Sbjct: 364 IKEEEHSFLKTLDQGLVLLDSIISN-ADTKIIDGRKAFELYDTFGFPIDLTALILSERGL 422 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F+ A++EQ+ R+R+ S +++ W L +FIGY+ L + + Sbjct: 423 -NLDEKGFDVAMQEQKKRSRS-----ASEISKEDWTVLSSDL-EQEFIGYEFLESNVKLV 475 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + RKV +K G++ + VF+ TPFYAE GGQ+GD Sbjct: 476 KYRKVTSKK---------------------------DGEQYQFVFNLTPFYAEGGGQVGD 508 Query: 531 TG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 G A GD I + T KK +H A +R V +D + RR+ NH Sbjct: 509 KGYLEAANGDVIYILDT---KKENNETIHFAKNLPKEVRETFKAV--VDQKQRRRTEANH 563 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL ILG+HV Q GS + LRFD +H +T+ EL +E VN I NL Sbjct: 564 TATHLLHQALREILGAHVEQKGSAVHSKYLRFDFSHFSKMTADELAEVERFVNARIEGNL 623 Query: 648 PVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 P+ R + + AI GA AL G KY D VR + S LCGGTHV +TG+I Sbjct: 624 PLEEGRNIPMQTAIEQGAMALFGEKYGDAVRTIRFG------KSIELCGGTHVKNTGDIW 677 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 I SE ++ +GIRRIEAIT + + L + L S+ + V + + EE Sbjct: 678 HFKIKSEGAVASGIRRIEAITSDAVKDFYSENNNVLSEVKHLLNNSK-DPVKALSSLQEE 736 Query: 767 YRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD-----SKELKSVMDAL 816 KL+ L+ K K N++ ++I +N + + +VD K+L M Sbjct: 737 NAKLKKEVEGLLRDKAK---NLKGDLLNEIQSINGIDFLAKKVDLDAGGIKDLSFEMG-- 791 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHM 874 + + + +L+ E KA + ++++L+ +AV + R K++ GGGGG+P Sbjct: 792 --QNKDNLFLLLAAENEGKALLSCYISKELVANKELSAVTVVRELGKLI-QGGGGGQPFF 848 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 A +GG N +A+ ++L Sbjct: 849 ATAGGKNPEGIAEALEQAKNYL 870 >gi|227534477|ref|ZP_03964526.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187876|gb|EEI67943.1| alanyl-tRNA synthetase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 914 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 335/910 (36%), Positives = 506/910 (55%), Gaps = 77/910 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 34 MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVVPDN 93 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++NVG+T RH TFFEMLGNFS G YFK+ I AW+LLT K Sbjct: 94 PRITNAQKSIRT----NDIENVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 149 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F D +RLY+TVY +D+ +LW+K +G+ D I+ DNFW + E GP GP SEIF Sbjct: 150 WFGFDPKRLYVTVYPKDKVTKELWQK-TGVPDDHIVE--AEDNFWDIGE-GPSGPDSEIF 205 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228 +D+G+ P PG E RY+EIWN+VF + RF+ P +IDTGM Sbjct: 206 YDRGQQFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 262 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFL 285 GLER+ V+Q ++ DLF +I+A+E+++ K G + V+ ++I DH R+ +F Sbjct: 263 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGVSAQDDVSFKIIADHARTVTFA 322 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG LP+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + Sbjct: 323 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGIDHDFLYQLVPVVGEIMKSYYPQILANQQ 382 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 I++ + SE+ RF +TLD G+ LL+ +++ L GK EI D AFKL+DT+G P+++ Sbjct: 383 FIQKVIESEEARFRQTLDAGVTLLNQIIADLKQDGKKEIPGAD-AFKLFDTYGFPVEMTN 441 Query: 403 DILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 + GL +D+ F + + QR RAR A G+ +K+ S+ ++F G+ Sbjct: 442 EYAQDEGLQ-VDMAGFKKNMAAQRDRARKARGDRQSMGSQDKVLMSITT---PSKFTGW- 496 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 +L + +S+ I+ + ++++VS +++FD+TPFY Sbjct: 497 --------------------TELDHKHASL--QIIVVNDQLQDSVSEGTAQLIFDETPFY 534 Query: 522 AEAGGQLGDTG-CAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 AE GGQ+ D G DG L ++DVQ G +H V +G L L++D Sbjct: 535 AEMGGQVADHGEIKAQDGTVLADVSDVQHAPNGQNLHTVTV-KGKLERGQQYWLSVDPLR 593 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+++S+NH+ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E V Sbjct: 594 RKKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLRQVETIV 653 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N I LP+ + M E+A GA A+ G KY VR+V + G +++ GGTH Sbjct: 654 NQKIWDALPITWKEMPIEEAKKLGAIAMFGDKYGSVVRIVKI-----GDYNTEFDGGTHP 708 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 +++ + L I SES I AGIRR+EA+T + A +L Q + L A LK+ Q NV Sbjct: 709 TNSNALGLFKITSESGIGAGIRRVEAVTSKEAYEYLTQQQDWLSETAENLKIDQVKNVPS 768 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVM 813 +V ++ + + Q A + +L + + ++ + ++ + EL+ + Sbjct: 769 KVTQLQADLKAEQKTVAGLQAKLAAQAAAGIFDHPEEVGGLKLIAKQVQVAGMNELRQLA 828 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGR 871 D + K Q+ I+++G KA++L+ V + F A DL + ++ KV GGGGGR Sbjct: 829 DKWKAK-QASDILVLGTEVSGKANLLVAVNDTANQAGFKAGDLIKAIAPKVG--GGGGGR 885 Query: 872 PHMAQSGGPN 881 P MAQ+GG N Sbjct: 886 PDMAQAGGKN 895 >gi|104774413|ref|YP_619393.1| alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423494|emb|CAI98396.1| Alanyl-tRNA synthetase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 866 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 337/910 (37%), Positives = 505/910 (55%), Gaps = 70/910 (7%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 FL+FF ++GH ++ S+SLIP +DPTL++ NSG+ K F G P + +T+ QK +R Sbjct: 2 FLDFFAEHGHMVMQSASLIPKDDPTLLWINSGVATMKKYFDGSVVPKNRRITSSQKSIRT 61 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRRLYIT 128 ND++NVG+T RH T FEMLGNFS G YFKE AI AW+ LT DLD+ +LY+T Sbjct: 62 ----NDIENVGKTARHQTLFEMLGNFSVGDYFKEEAIPWAWEFLTSPDWLDLDKDKLYVT 117 Query: 129 VYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-------E 181 VY +D EA ++W ++ GL I+++ DNFW + E GPCGP SEIF+D+G E Sbjct: 118 VYPKDTEAHRIWHEVVGLPESHIVQL--EDNFWDIGE-GPCGPDSEIFYDRGQENNDVPE 174 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 P PG E RY+EIWN+VF +F P +IDTGMGLER+ ++LQ+ Sbjct: 175 DDPENYPGG--ENARYLEIWNIVFSEFNHLPDGSYVEQPHKNIDTGMGLERVLSILQDAP 232 Query: 242 NNYDIDLFKHLIQASEQVT-GMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DLF +I A+E+++ G KY N + ++ ++I DH+R+ SF I DG LP N GRG Sbjct: 233 TNFETDLFLPIIHATEEMSAGKKYGANKADDISFKIIADHIRAISFAIGDGALPGNTGRG 292 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA R LG + L+P + M S YPE+ I + +++E++RF Sbjct: 293 YVLRRLLRRAALNGRKLGIDGAFLYKLVPVVGDIMKSHYPEVSDQAEFISKVVKNEEDRF 352 Query: 359 GKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 G TL+ GL LLD ++ +D+ ++G AFK++DT+G P ++ + +GL +D Sbjct: 353 GATLEAGLTLLDDLIDKAENSEDKTISGKDAFKMFDTYGFPYELTVEAAEDKGLK-VDKD 411 Query: 417 SFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F+ +E Q+ RAR L S G+ ++ +K+K + + +E Sbjct: 412 GFDAEMEAQKERARKARGNLQSMGSQDETLMKIKDK---------SVFEYGVYEEE---- 458 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 S +V IV ++V++A G+K ++FD+TPFYAE GGQ+ D G Sbjct: 459 -------------SQLVDIIVDD-KLVDKA-DGEKATLIFDKTPFYAERGGQVADHGDIY 503 Query: 536 GDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 L ++ DVQ +H V +++ + + L ID R L +HSATHLL Sbjct: 504 DQEGNLVARVVDVQHAPNDQNLHFVDVVLPLVKGQ-TYKLKIDRARREGLRHSHSATHLL 562 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG H Q GS + PD LRFD T PIT ELK++E VN+ I + + V T Sbjct: 563 HAALRQVLGEHTHQAGSVVEPDYLRFDFTSLDPITPRELKNVEKIVNEKIWEAIQVKTTE 622 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + E GA AL KY D+VRVV ++ S CGGTH +T +I + I+SE Sbjct: 623 TDPETGKKMGALALFDGKYTDKVRVVQMD-----DFSIEFCGGTHCDNTSQIGVFKIISE 677 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQL 772 +I AG+RRIEA+T + A +L G+ + L + + +K ++ + ++ + EE R + Sbjct: 678 QAIGAGVRRIEAVTSKLAYEYLAGRSDILDQIQAQVKATKVDGIQSKIASLQEELRSAEK 737 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +A + Q+N + D+ ++ I +L+ + D + + +S +++L Sbjct: 738 QNAAYEAQINASKAGKIFDQVKTVGDLTVIATIADVKGMNDLREIADQWKSEGKSDVLIL 797 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 G E KA++LI + + LD+ A DL + A + GGGGGGRP+MAQ+GG N Sbjct: 798 -GAKSEDKANMLISLGQKALDKGLKAGDLIKSVAAIF-GGGGGGRPNMAQAGGKNPEGLQ 855 Query: 887 QAIAGVASFL 896 AI S L Sbjct: 856 DAIDAAVSQL 865 >gi|38233936|ref|NP_939703.1| alanyl-tRNA synthetase [Corynebacterium diphtheriae NCTC 13129] gi|48428504|sp|P61699|SYA_CORDI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|38200197|emb|CAE49878.1| alanyl-tRNA synthetase [Corynebacterium diphtheriae] Length = 888 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 335/916 (36%), Positives = 497/916 (54%), Gaps = 65/916 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F F K GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 6 IRERFTNHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWQLLTGTVAEGGLG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA ++W K G+ +++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPERLWVTVYLDDDEAAEIWNKKIGVPSERIQRLGMADNYWSMGIPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233 G G G + RY+EIWNLVFM+ E + N + LPK +IDTGMG+ER+ Sbjct: 181 GPEY-GAEGGPIADDNRYMEIWNLVFMENERGEGIGKDNFEIVGPLPKKNIDTGMGIERV 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ DL + +I +E++TG Y N+ N RVI DH R+ LI DG+ Sbjct: 240 ACILQGVDNVYETDLLRPVINVAEELTGATYGTNDDDNIRFRVIADHSRTGMMLILDGVT 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGY+LRR++RR + A LLG + + + M +YPE+ + I Sbjct: 300 PGNEGRGYILRRLLRRIIRSAHLLGAKGKTLEKFMNTIMDTMTPSYPEIADNRERILRVA 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E++ F KTL G L + + +++L+G AFKL+DT+G P+D+ ++ G Sbjct: 360 ITEEKAFLKTLASGTELFEDKADQVKNSGNKVLDGAAAFKLHDTYGFPIDLTLEMAAEAG 419 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +DI FN + EQR+RA+A + G + + T F GYD L Sbjct: 420 L-NVDIEGFNSLMAEQRARAKADNRAKKHGHADLSIYREWVDEHPTVFTGYDEL------ 472 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 D KVL ++ G V E +G++VEV+ + +P YAEAGGQLG Sbjct: 473 TTDSKVL-----------------GLLSAGNKVNEIKAGEEVEVILEASPLYAEAGGQLG 515 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G + L++ DVQK + ++VH A V +G L + +D R H+ Sbjct: 516 DRGQILMGDTVLKVNDVQKIGKKLWVHKATVAQGGLSVGDVVTAQVDSDWRHAARQAHTG 575 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H AL +LG Q GS P LRFD +++ +T +L+ I++ N + + V Sbjct: 576 THLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTESLTPRQLEEIQNITNQAVDSDWDV 635 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T + E+A A GA AL G Y VRV+ V GG S LCGGTHV+ + +I + Sbjct: 636 NTIETSLEEAKAMGALALFGENYGSEVRVIEV----GGPFSIELCGGTHVTHSSQIGPVA 691 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 I+ ESS+ +G+RRIEA TG + +L + ++++AS +KV + R+ + ++ + Sbjct: 692 ILGESSVGSGVRRIEAYTGLDSFKYLAKEQALVENIASSMKVKPEELPDRIAALTQKLKD 751 Query: 770 LQ-LIHAKRKLQLNVEDL----SCHKIADVNFMSHIISEVDS-KELKSVMDALQKKIQS- 822 + I R QL + ++ V ++ +S+V++ +L+S+ +++++ Sbjct: 752 AEKAIADMRSAQLMAQATGLVAGAIEVNGVKLVAQRVSDVENMGDLRSLAADIKQRLDDV 811 Query: 823 -GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG---GGGGGRPHMAQSG 878 ++ LVG KA ++ T+ + +A A AK+LG G GGG+P MAQ Sbjct: 812 PAVVALVGEDASGKAPFVVGATKAAV---SAGYKANAYAKILGQYIEGNGGGKPDMAQGS 868 Query: 879 GPNGNKADQAIAGVAS 894 N + DQ IA V + Sbjct: 869 ARNSSGFDQGIAAVKA 884 >gi|325109123|ref|YP_004270191.1| alanyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305] gi|324969391|gb|ADY60169.1| alanyl-tRNA synthetase [Planctomyces brasiliensis DSM 5305] Length = 869 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 332/914 (36%), Positives = 499/914 (54%), Gaps = 77/914 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R +L FF++ G PS L+P NDPT++FT +GM FKN F G K + TT QK Sbjct: 6 LRDAYLSFFEEKGCIRRPSDVLVP-NDPTVLFTPAGMNQFKNEFLGIGKLEFTKATTCQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R G D+ NVG T HHTFFEMLGNFSFG YFK AI AW+ LT K LD R Sbjct: 65 CLRTG----DIGNVGVTAYHHTFFEMLGNFSFGDYFKREAIHWAWEFLTDKKWLGLDGER 120 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIFFDQ 179 L +TVY +D+EAF +W+ GL ++I R +NFW + G CGPCSEI++ Sbjct: 121 LTVTVYLDDDEAFGIWENEIGLPKNRIKREDEYENFWPAGAPTEGPDGVCGPCSEIYY-- 178 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237 G + +EIWNLVF QF + + LP +IDTGMGLER A VL Sbjct: 179 ----------HPPTGGKEVEIWNLVFTQFNRVGNPPDNLKPLPMKNIDTGMGLERTAAVL 228 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q +N++ID K L + V G+KY G + R I DH+R+ + + + +LP N+ Sbjct: 229 QGVESNFEIDTLKPLCETVGDVLGVKYNFGGEHGRAMRRIADHVRAVTMCVHENVLPDNK 288 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 +GYV+R+++RRA+ + L+G EP++ L+P + +G YPEL + ++ ++ E+ Sbjct: 289 EQGYVVRQLLRRAVLESYLIGKQEPVLHLLVPKVVELLGKPYPELKETVGSVQSAIQEEE 348 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F T++RGL + L I++G AF+L+ T G L + D L AR +D Sbjct: 349 NAFLDTIERGLNRFERCLDGAKSSGIISGKDAFQLHTTDGF-LYELTDALAARHNLKVDR 407 Query: 416 ISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 I F++ +EE S A + G + I ++ G T+F+GY+ Sbjct: 408 IGFDKLMEEHGIISNAGKQKSVMAEGPLDAI----RKTSGGTEFLGYE------------ 451 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQK--VEVVFDQTPFYAEAGGQLGD 530 V I+ + ++V+E G + + VV D+TPFYAE+GGQ+GD Sbjct: 452 -----------ATSAEGKVVGIIAEKQLVDEVTEVGHRDVIAVVIDRTPFYAESGGQVGD 500 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G DGI + D QK + +++H +++G L +L +D + R + HSAT Sbjct: 501 IGSLTADGIEFVVQDTQKDGD-LWLHIGHLKQGKLEVGQTLTAEVDGERRDAIRRAHSAT 559 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+HHAL LG + +Q GS + D LRFD H KP++ EL+ IED VN IA V Sbjct: 560 HLMHHALRETLGENATQRGSKVQQDELRFDFAHKKPVSPEELRRIEDMVNSHIANGNDVA 619 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M EDA A GA AL G KY D VRVVS+ G +S LCGGTH+S+TG++ + I Sbjct: 620 TDLMKIEDARAKGAMALFGEKYPDLVRVVSM-----GDYSIELCGGTHLSNTGQVGVFKI 674 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-NVVGRVEEIWEEYR- 768 ++E + G+RR+ A TG++A ++E L+ L LKVS +++ +V+ + E + Sbjct: 675 IAEEPVAKGVRRLVAYTGEKAIEESRKKEELLRELMLELKVSAPEDLIRKVQSLQAELKD 734 Query: 769 -KLQLIHAKRK-LQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K +L R+ + V+ L + K+ DV ++ VD L+ D L+ K ++ + Sbjct: 735 TKKKLSDQMRQSVGDEVDTLLQNAEKVGDVAVITFQPENVDKDVLRDYADRLRTKQKAAV 794 Query: 825 IMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 ++ I + K ++L V++DL+ + NA D + +AK++ GGGGGRP +A++GG + + Sbjct: 795 LLAAEI--DGKVALLAAVSKDLVKQGVNASDCVKAAAKLV-KGGGGGRPDLAEAGGKDPS 851 Query: 884 KADQAIAGVASFLK 897 K +A+ A F + Sbjct: 852 KISEALKAGAEFYR 865 >gi|323486958|ref|ZP_08092273.1| hypothetical protein HMPREF9474_04024 [Clostridium symbiosum WAL-14163] gi|323399730|gb|EGA92113.1| hypothetical protein HMPREF9474_04024 [Clostridium symbiosum WAL-14163] Length = 817 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 319/849 (37%), Positives = 472/849 (55%), Gaps = 53/849 (6%) Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +TT QKC+R G D++N+G+T RH TFFEMLGNFSFG YFK AI +W+ LT+ L Sbjct: 1 MTTCQKCIRTG----DIENIGKTARHGTFFEMLGNFSFGDYFKTEAIHWSWEFLTEVVGL 56 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 D RLY +VY ED+EAF +W K G+ ++I R DNFW GPCGPCSEI++D+G Sbjct: 57 DPDRLYPSVYLEDDEAFDIWNKEMGIPKERIFRFGKEDNFWEHG-AGPCGPCSEIYYDRG 115 Query: 181 ECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 E G P + E +RYIE+WN VF QF L +IDTGMGLER+A V+Q Sbjct: 116 EKYGCGSPDCTVGCECDRYIEVWNNVFTQFNNDGHGNYTELEHKNIDTGMGLERLAVVVQ 175 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANEG 296 E + + +D K L+ ++ KY+ N+ V+ R++ DH++S +F+I+DGI+P+NEG Sbjct: 176 EVDSLFTVDTNKALLDRVCELAHTKYQENHETDVSLRIVADHIKSCTFMISDGIMPSNEG 235 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RRA + + LG M L + YPEL + +I + L E++ Sbjct: 236 RGYVLRRLLRRAARHGKKLGIEGKFMAELSKTVIALSKDGYPELEEKSAMIFKVLSEEED 295 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 +F KT+D+GL +L + + + K+ +L+GD AFKLYDT+G P+D+ ++IL + L+ +D Sbjct: 296 KFNKTIDQGLAILADMETEMAKNNETVLSGDNAFKLYDTYGFPIDLTREILEEKNLS-LD 354 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F A+++Q+ +ARA + + + T+F GY K +E Sbjct: 355 EDGFTAAMKKQKEQARAARKTTNYMGADVTVYQSIDPAVTTEFDGY-----GKLAEE--- 406 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 S + + + EIVE GQ ++ +TPFYA GGQ D G Sbjct: 407 ---------------SEITVLTTETEIVEALTDGQAGTIIVKKTPFYATMGGQQADVGVI 451 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + D K G H V +G+ +T ++ L +D +NR NHSATHLLH Sbjct: 452 TAQDAEFTVKDTIKLQGGKVGHVGYVTKGMFKTGDTVTLKVDKENRELTERNHSATHLLH 511 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL T+LG+HV Q GS +T D LRFD TH +T E+ ++E VND IA LPV T +M Sbjct: 512 KALRTVLGTHVEQAGSLVTKDRLRFDFTHFSAMTDEEIAAVEKLVNDEIAAALPVETMVM 571 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++A +GA AL G KY D VRVV + G S+ LCGGTHV +T I IVSE+ Sbjct: 572 TLDEAKKTGAMALFGEKYGDSVRVVKM-----GDFSTELCGGTHVDNTSSISAFKIVSEA 626 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 I AG+RRIEA+T ++ +++L A +K + + ++E + +E + L + Sbjct: 627 GIAAGVRRIEALTSTGLMNYYKEMEKELHEAARVVKSTPSGLTAKLESMLDEIKALHSEN 686 Query: 775 AKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 K K +L + L ++ V ++ + +VD L+++ D L++K+ G++++ Sbjct: 687 EKLKSKLANDSLGDVMNQVQEVNGVKLLAVQVKDVDMNGLRNLGDQLKEKLGEGVVVIAS 746 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + K + V E +A +L + A ++ GGGGGGRP+MAQ+GG N Sbjct: 747 VQDGKVNLMASVTGEAQKKGAHAGNLIKAIAGLV-GGGGGGRPNMAQAGGKNP------- 798 Query: 890 AGVASFLKK 898 AG+ LKK Sbjct: 799 AGIPDALKK 807 >gi|323359964|ref|YP_004226360.1| alanyl-tRNA synthetase [Microbacterium testaceum StLB037] gi|323276335|dbj|BAJ76480.1| alanyl-tRNA synthetase [Microbacterium testaceum StLB037] Length = 889 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 328/925 (35%), Positives = 494/925 (53%), Gaps = 71/925 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I FL+FF+K H ++PS+SL+ +DP L+FT +GMVPF +G P Y Sbjct: 2 KTAEIAQRFLDFFEKKNHTIVPSASLV-TDDPALLFTVAGMVPFIPYLSGVVPPPYPRAA 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 VQKC+R ND++ VG+T RH TFF+MLGN+SFG YFKE AI+ AW+LLT Sbjct: 61 DVQKCIRT----NDIEEVGKTPRHGTFFQMLGNWSFGDYFKEDAIRFAWELLTAPEAEGG 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 D + L++TVY+ED+EA LW K+S L ++I R+ + N+WS GP GPCSEIFF Sbjct: 117 LAFDPKDLWVTVYEEDDEARDLWLKLSTLPDERIQRLGKDTNYWSTGLPGPAGPCSEIFF 176 Query: 178 DQGEC--IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMG 229 D+G I GG P + ++ RY+EIWNLVFMQ+E N + ++ LP +IDTGMG Sbjct: 177 DRGPAYGIDGG-PATDDD--RYVEIWNLVFMQYEITNVRSKYDFDIVGELPAKNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLI 286 LER+A + Q N Y+ D + ++ + ++ G Y + V R++ DH+RSS L+ Sbjct: 234 LERIAFIKQGVDNMYETDQVRPVLDLAAKLAGKAYGAESHEDDVRLRIVADHVRSSLMLL 293 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 ADG+ P+NEGRGY+LRRIMRRA+ RLLG L A M +YPE+ Sbjct: 294 ADGVTPSNEGRGYILRRIMRRAIRSMRLLGVEGATFPELFAASRDAMKESYPEVEADYAR 353 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDI 404 + +E++ F +TL G +LD ++ G L+G AF L+DT+G P+D+ +I Sbjct: 354 LSAYAIAEEQTFLRTLAAGSAILDQSVAEAKNGGGTTLSGSEAFLLHDTYGFPIDLTLEI 413 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL+ +D +F+Q + EQR+RA+A + ++ + G T F GY L+ Sbjct: 414 AEEAGLS-VDRGAFDQLMLEQRTRAKADARARKGAIADQSAYREFRALGETVFTGYTELQ 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 S V I+ G+ + A GQ E++ +T YAE+ Sbjct: 473 -----------------------TESKVLGILVDGQGTDRASEGQIAEIITGETALYAES 509 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+ D G +G G L++ DVQ+ G+ H V G + +D NR Sbjct: 510 GGQVADKGTIVGPGYELEVLDVQRPVPGLISHTVEVTTGEVSVGAPATTVVDALNRHSAQ 569 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HSATHL+H A+ LG +Q GS +RFD + ++ IED N+ + Sbjct: 570 QAHSATHLVHAAIRDTLGKTATQTGSLNRAGYMRFDFSWGSALSPETRTEIEDIANNAVR 629 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 NL V TR+M+ ++A A+GA AL G KY D VR+V + GG S LCGGTHV+ + E Sbjct: 630 DNLEVTTRVMSLDEAKAAGAMALFGEKYGDTVRMVDI----GGPWSRELCGGTHVARSSE 685 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L+ +V E S+ A RR+EA+ G A L + + L++ LK + + R+ E+ Sbjct: 686 IGLVNLVGEQSVGASNRRVEALVGLDAFRDLAAERAIVSQLSTSLKTPREQLTSRIAELA 745 Query: 765 EEY----RKLQLIHAKR---KLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDAL 816 +K+ A+ +L VE + + V ++ + E + +++S+ AL Sbjct: 746 ANLKAAEKKIAAFEAQALTGRLPQLVE--AAISVGTVRVVAESLGEGASADDVRSL--AL 801 Query: 817 QKKIQSG----IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872 Q + + G ++ L ++ +A+V++V E +R A +A + GGGGGGRP Sbjct: 802 QVRDRLGTDPAVVALASVAG-GRATVVVVTNESARERGLAAGALAKAAAGILGGGGGGRP 860 Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897 +AQ GG + QA+ G+ + ++ Sbjct: 861 DVAQGGGTDATALPQALEGIVADVR 885 >gi|330752589|emb|CBL87535.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium] Length = 873 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 326/865 (37%), Positives = 480/865 (55%), Gaps = 73/865 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ HE++ S+ ++ +DPTLMFTN+GM PFK F G +P + + QK Sbjct: 6 IRKQFLDFFESKAHEIVSSAPMVIKDDPTLMFTNAGMNPFKEFFLGFAQPTSKRLADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHTFFEMLGN+SFG YFK+ AI+ AW+LL + +D RLY Sbjct: 66 CLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLIDIYKIDAERLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T++ ++D EA+ LWK I L D+I+ + DNFW M + GPCGPCSEI D Sbjct: 126 VTIFEGSLGEKLEKDTEAYNLWKAI--LPEDRILLGSKKDNFWEMGDQGPCGPCSEIHID 183 Query: 179 -----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + E PG +++ + IE+WNLVF++F + LPK IDTGMG ER+ Sbjct: 184 TRPKTEWEKTPGS-ALVNKDHPQVIELWNLVFIEFNRNADGGLEKLPKKHIDTGMGFERL 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 VLQ K +NYD D+F +I E++T Y + V RVI DH+R+ F IADG L Sbjct: 243 CMVLQGKISNYDTDVFTPIINEIEKITKYNYGVSEKSDVAIRVIADHIRTVFFAIADGQL 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RRA+ Y L +P + L+ + ++ +PEL + K L + Sbjct: 303 PSNIGAGYVIRRILRRAIRYGFTFLDQKKPFIHLLVEIISKQLSDIFPELKKEKKLAQNV 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+E F KTLD+GLVLL+ V+ +L K + + GD F+LYDT G P D+ I RGL Sbjct: 363 IKKEEESFLKTLDQGLVLLENVIKNL-KAKKIPGDKVFELYDTFGFPFDLTTLIANERGL 421 Query: 411 AGIDIISFNQALEEQRSRARAHSLG-LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F +A+ +Q+SR+R +L +G W +KE +F+GYD L + + Sbjct: 422 E-IDKEGFEKAMGKQKSRSRGATLSKVGD------WIVIKES-KKEEFVGYDTLESNILI 473 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 RK+ K G ++ FD+TPFY E GGQ+G Sbjct: 474 TRYRKMNTNK---------------------------DGDFYQLTFDKTPFYPEGGGQVG 506 Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + +G L ITD KK + +HH + + ++S + ++ + R S NH+ Sbjct: 507 DQGYLELENGEILNITDT-KKENNLVIHHC--KSLPKKMDISFKVFVNPELRLNTSSNHT 563 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LG+HV Q GS + RFD +H + + +LK++E VN+ I + +P Sbjct: 564 ATHLVHQALRFVLGNHVQQKGSMVNSKMFRFDFSHFSKLKNEQLKNVEKFVNERILEKIP 623 Query: 649 V-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 + R + + A+ GA AL G KY VR + S LCGGTHV +T +I Sbjct: 624 LEEQREIPHDKALEEGAIALFGEKYGKNVRTIRFG------KSIELCGGTHVKNTSDIWY 677 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 I+SES++ +G+RRIEA+TG +++ Q LK++ LK SQ V + E Sbjct: 678 FKIISESAVASGVRRIEAVTGSAVKNYFENQTTILKNINQLLKQSQDPVKAILNLQSENI 737 Query: 768 RKLQLIHAKRKLQ---LNVEDLSCHK-IADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 + I A KL+ L E L K I+ VNF++ I E+D++ +K + + K+ Sbjct: 738 FLKKEISALSKLKSKTLKSELLKEIKIISGVNFLAKEI-EIDAQGMKDLSFEIGKEFNK- 795 Query: 824 IIMLVGISKEKKASVLIVVTEDLLD 848 II++ G K K + +++ L++ Sbjct: 796 IILVFGSRKTGKPLISCYISKQLVN 820 >gi|160915324|ref|ZP_02077537.1| hypothetical protein EUBDOL_01333 [Eubacterium dolichum DSM 3991] gi|158433123|gb|EDP11412.1| hypothetical protein EUBDOL_01333 [Eubacterium dolichum DSM 3991] Length = 874 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 330/917 (35%), Positives = 502/917 (54%), Gaps = 75/917 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL++F GH + P +SL+P NDPTL++ N+G+ K F G EKP + Sbjct: 7 NQIRQMFLDYFASKGHMIEPGASLVPHNDPTLLWINAGVAALKKYFDGSEKPKNNRIANA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT + + Sbjct: 67 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEEAIPFAWEFLTSPQWIGFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY++VY +D +A+++W ++ G+ I++ T NFW + E GP GP SEIFFD+GE Sbjct: 123 EKLYVSVYTDDHDAYRIWTEVCGVDPSHILK--TEGNFWEIGE-GPGGPDSEIFFDRGEE 179 Query: 183 I-PGGLPG----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234 P GL E +RYIE+WN+VF QF+ + ++ E LP+ +IDTGMGLER+ Sbjct: 180 YDPEGLEEKLFFEEMENDRYIEVWNVVFSQFDCKPELDRSEYKELPQKNIDTGMGLERLV 239 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293 ++Q N+D DLF +I +E+ T Y+ N N + RVI DH+R+ +F +ADG L + Sbjct: 240 CLVQGGETNFDTDLFLPIIHETEKYTSCSYQVNENKMAFRVIADHIRTVTFALADGALFS 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + + L M L+P + M YP L + I + +++ Sbjct: 300 NEGRGYVLRRVLRRAVRFGKKLKIEGAFMYKLVPVVYEIMQDFYPYLGEKLDYIAKLVKA 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+ERF TL G L+ V+ + + ++G AFKLYDT+G P ++ ++ G + Sbjct: 360 EEERFQATLSDGEKLMREVMERNKETKTIDGATAFKLYDTYGFPFELTLEMAEESGYF-V 418 Query: 414 DIISFNQALEEQRSR---ARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 D F +++Q+ R AR + S + + + +L+ + F+GYD Sbjct: 419 DKDGFQAEMKQQKERARNAREEQESMSSQSADLMNCTLE-----STFVGYD--------- 464 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 C I ++ K V+ E+VE+ +V+FDQT FYAE+GGQ+GD Sbjct: 465 ---ACCCDARVI-------ALFKDGVKVDELVEDG------DVMFDQTVFYAESGGQVGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG I + + + K +H + G L + L +D + R ++ NHS T Sbjct: 509 TG-TISKAVEAVVENTVKAPHKQHLHRVHINAGALHVGDEVSLKVDEKRRAVITSNHSCT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL AL ++G H++Q GS ++ + LRFD TH + ++ +L++IE+ VN+ IA + V Sbjct: 568 HLLQSALKRVVGEHIAQAGSFVSDEYLRFDFTHFEKVSEEQLRNIENLVNEFIAGHYSVS 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 M E+A SGA AL KY D VRVVS+ G S CGG HV++T EI + I Sbjct: 628 KVEMPIEEAKQSGATALFDEKYGDVVRVVSM-----GDVSKEFCGGCHVNNTQEIGVCKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS-----QGNVVGRVEEIWE 765 +SE SI +GIRRI A TG A D+ L ++A+ LK+ + V VEE E Sbjct: 683 ISEESIGSGIRRITAKTGYDAYKEFAAGDQMLHAIAADLKMKGIANLEAKVANVVEEANE 742 Query: 766 EYRKLQLIHAK------RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 ++L + ++ L+ +E+ + HK+ N +S D LK + + L+ K Sbjct: 743 LKKQLATLQSQMLALKANDLENTIEECNGHKLLFAN-----LSGADGNALKDIANNLKAK 797 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + ++ L S++K V + + DL R +A ++ G GGGRP +AQSGG Sbjct: 798 YEDIVVFLASASEDKITFVAAAGKAAVANGVKCGDLVRQAA-MICDGKGGGRPDLAQSGG 856 Query: 880 PNGNKADQAIAGVASFL 896 + +K ++A+ V + L Sbjct: 857 KDPSKCEEAMKFVKNML 873 >gi|227505016|ref|ZP_03935065.1| alanyl-tRNA synthetase [Corynebacterium striatum ATCC 6940] gi|227198380|gb|EEI78428.1| alanyl-tRNA synthetase [Corynebacterium striatum ATCC 6940] Length = 895 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 335/925 (36%), Positives = 502/925 (54%), Gaps = 69/925 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64 IR F + F K GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 6 IRERFTQHFVKTGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNGLATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT F Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWSLLTGSVEDGGFG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA +W + G+ ++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPERLWVTVYLDDDEAADIWHEQVGVPRERIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233 G G G + RY+EIWNLVFMQ E + N + LPK +IDTG+G+ER+ Sbjct: 181 GPEY-GAEGGPVADDNRYMEIWNLVFMQNERGEGIGKGNFEILGPLPKKNIDTGLGIERV 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EG---NNIVNHRVIVDHLRSSSFLIADG 289 A +LQ N Y+ DL + +I A+E++TG KY EG + + RVI DH R+ LI DG Sbjct: 240 ACILQGVDNVYETDLLRPVIDAAEELTGAKYGEGASDQDNIRFRVIADHSRTGMMLILDG 299 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P NEGRGY+LRR++RR + ARLLG T P M + + M +YPE+ + I Sbjct: 300 VTPGNEGRGYILRRLLRRIIRSARLLGATAPSMERFMNTIMDTMTPSYPEIADNRERILR 359 Query: 350 TLRSEDERFGKTLDRGLVLLDGVL------SHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 +E++ F KTL+ G L D + S +IL+G+ AF+L+DT+G P+D+ + Sbjct: 360 VAIAEEKAFLKTLESGTKLFDEAVEALKSTSRAATPKILSGEKAFELHDTYGFPIDLTLE 419 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + GL +D+ FN+A+ EQR RA+A + G + + T F GY+ L Sbjct: 420 MAQEAGLE-VDMDGFNEAMGEQRRRAKADNQAKKHGHADLSLYREWVDNNPTVFTGYETL 478 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 D K++ +V+ G+ V E G++VEV+ DQ+P YAE Sbjct: 479 ------TSDAKII-----------------GLVRDGQKVNEVHEGEQVEVILDQSPLYAE 515 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 +GGQ D G L++ DVQK + ++VH A V G L ++ +D + R Sbjct: 516 SGGQTADRGRIYAGESLLEVGDVQKIGKKLWVHKATVTAGGLDLGSTVTAEVDQKWRHGA 575 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 HSATHL+H AL +LG Q GS P LRFD +++ ++ A+L+ I N + Sbjct: 576 VQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSPAQLEEIALITNQAV 635 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + V T + E A GA AL G Y +VRVV E GG S LCGGTHV++T Sbjct: 636 DAHFAVNTIETSLEQAKQMGAMALFGENYGSQVRVV----EMGGPFSIELCGGTHVANTS 691 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LK+ ++ R+ ++ Sbjct: 692 EIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGISRELKIQSEDLPERIAQL 751 Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFM---SHIISEVDSKELKSVMDAL 816 E+ +++ +H K +L D+ I F + + V +L+++ + Sbjct: 752 TEKLKAAEKQIDELH-KAQLMAQTADMIGGAITVNGFAVVSVRLPNNVSGGDLRTLATDI 810 Query: 817 QKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873 + ++ ++G+++L ++ K ++ T+ + R A DL + + + G GGG+P Sbjct: 811 KNRLGDEAGVVVLASENEGGKTPFIVGATKAAVARGIKAGDLVKTISGYV-DGKGGGKPD 869 Query: 874 MAQSGGPNGNKADQAIAGVASFLKK 898 MAQ G N A + L+K Sbjct: 870 MAQGSGANAEGLQAAFNALRDELEK 894 >gi|284044488|ref|YP_003394828.1| alanyl-tRNA synthetase [Conexibacter woesei DSM 14684] gi|283948709|gb|ADB51453.1| alanyl-tRNA synthetase [Conexibacter woesei DSM 14684] Length = 888 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 343/930 (36%), Positives = 498/930 (53%), Gaps = 109/930 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIP-CNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 IR TFL FFQ+ H L S+ L+P +DP+++ T +GM P K F G E+P +T+ Q Sbjct: 8 IRETFLSFFQQREHLRLQSAPLVPTAHDPSVLLTTAGMHPLKPYFQGVEQPPATRLTSCQ 67 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC RA D++NVG T RH T FEMLGNFS G YFKE I AW+L T+ F LD R+ Sbjct: 68 KCFRA----TDIENVGNTLRHLTCFEMLGNFSIGDYFKEEVIAFAWELSTQGFGLDPERI 123 Query: 126 YITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 ++TV+ DE DEEA +LW+K+ G+ ++I+ + DNFW TGPCGPCSE++ Sbjct: 124 WVTVFGGDEELGLGADEEAIELWQKV-GVPRERIVECSREDNFWQAGPTGPCGPCSELYL 182 Query: 178 DQGECI--PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 D+G P LP E ER++E WNLVFMQ++Q LP +IDTG+GL R A Sbjct: 183 DRGLDFGAPDDLPAG--ENERFLEFWNLVFMQYDQNPVNTLAPLPSKNIDTGLGLNRFAA 240 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPA 293 +LQ K + ++ D F LI+ ++++G Y + R++ DH R+ +FL+ADG++P+ Sbjct: 241 MLQGKESVFETDQFWPLIELGQELSGRSYGQDEATTRALRILADHSRAMTFLVADGVVPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEETLR 352 NE RGY+LRR+MRRA+ + R +G EP + A + MG+AYPE+++ I + L Sbjct: 301 NEDRGYILRRVMRRAIQHGRRIGI-EPGFLPKFAARVEQIMGAAYPEIVEHSDAIRKWLV 359 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+E FG+TL++G LLD +++ ++ E L + F+L+DT+G P+DI ++I L Sbjct: 360 AEEESFGRTLEQGTKLLDELIAQAKREGEEGLGAEDVFRLHDTYGFPIDITREIAAEHDL 419 Query: 411 AGIDIISFNQALEEQRS----------------RARAHSLGLGSGTTEKIWFSLKEKYGA 454 G+D F Q +++QR+ R RA L G+ Sbjct: 420 -GVDEPGFEQLMDQQRARARAGAGGKGATGDGLRERAQELAGGAAFQ------------- 465 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 ++F GY T + V A+ EA +V V Sbjct: 466 SEFTGY-----------------------ATTAQETTVGAL--------EAEDDGRVLVK 494 Query: 515 FDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIV---ERGILRTE 568 ++PFYA GGQ+ D+G CA GD R ++ DV + A G +V ERG L+ Sbjct: 495 LVESPFYAAGGGQVSDSGWVECADGD-CRAEVLDVLRVAGG--ADQVVVVRPERGALKPG 551 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + +D Q R NH+ATHLLH AL LG HV Q GS + PD LRFD TH + ++ Sbjct: 552 EHVHAVVDRQARHATEANHTATHLLHAALRRRLGGHVRQAGSAVQPDKLRFDFTHGQALS 611 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 EL+ +ED VN+ + N PV ++A GA AL G KY D VR+V V G Sbjct: 612 PDELRDVEDEVNEWVLANFPVRALTTTLDEAKRLGAMALFGEKYGDVVRMVEV---GDGS 668 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S LCGGTHV ST EI L + +E+S A +RRIEAITG A L D L+ A+ Sbjct: 669 FSRELCGGTHVRSTAEIGLFRVTAETSSAANVRRIEAITGPAAVRLLREHDGALRDAATA 728 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVEDL---SCHKIADVNFMSHI 800 L+ + V V+++ ++L+ AK+ L+V+ L + ++ Sbjct: 729 LRATPEQVPAEVDKLRVRVKELEKA-AKQGAGAGNGALDVDALVAGATEHGGGARVVAAA 787 Query: 801 ISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLS 859 I D K L V D L+ K+ I+L G + + ++ V L++R A + +++ Sbjct: 788 IELPDPKALPDVADRLKGKLGDAAIVL-GTVSDGRVHLVASVAPALVERGVKAGAIVKVA 846 Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 A+V GGGGGGR MA++GG + K +AI Sbjct: 847 AEVT-GGGGGGRDTMARAGGRDPEKLSEAI 875 >gi|322517303|ref|ZP_08070179.1| alanine--tRNA ligase [Streptococcus vestibularis ATCC 49124] gi|322124086|gb|EFX95636.1| alanine--tRNA ligase [Streptococcus vestibularis ATCC 49124] Length = 872 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 331/911 (36%), Positives = 497/911 (54%), Gaps = 70/911 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FD + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293 V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS +F I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIGDGALPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K IE+ ++ Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIVKR 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E F +T+D G +LD +L++L K L G FKLYDT+G P+++ +++ G Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKGTLEGKDIFKLYDTYGFPVELTEELAEDEGFK 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F A++EQ+ RARA + GS G ++ S+F+ E Sbjct: 419 -IDHEGFKAAMKEQQERARASVVKGGS-------------MGMQNETLANITEPSEFLYE 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + IV + SGQ + +VF+QTPFYAE GGQ+ D Sbjct: 465 -------------AETAESHLSVIVADDARHDSVNSGQAL-LVFEQTPFYAEMGGQVADH 510 Query: 532 GCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G I D + ++ DVQ+ G +H VE G L + L ID+ R ++ NH+ Sbjct: 511 GT-ISDAAGTVVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHTRRHRVMKNHT 568 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL I+G H Q GS + LRFD TH + +T EL++IE+ VN+ I + P Sbjct: 569 ATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKATP 628 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + + A + GA AL G KY VRVVS+ G +S LCGGTHV++T EI + Sbjct: 629 VTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIGMF 683 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 IV E I +G RRI A+T + A +++ LK++A+ LK Q V +V + E+ Sbjct: 684 KIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQEQL 743 Query: 768 RKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822 LQ +A K + + + N + +I S+V D+ L++ D ++ S Sbjct: 744 HALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADYS 803 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L E K +VL+ + N + ++ A ++ G GGG+P MA +GG + Sbjct: 804 DVLVLAAHIGE-KVNVLVASKSKGVHAGNVI---KVLAPIV-SGRGGGKPDMAMAGGSDA 858 Query: 883 NKADQAIAGVA 893 N ++ VA Sbjct: 859 NGIQDLLSAVA 869 >gi|228471913|ref|ZP_04056683.1| alanine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624] gi|228276765|gb|EEK15471.1| alanine--tRNA ligase [Capnocytophaga gingivalis ATCC 33624] Length = 877 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 343/921 (37%), Positives = 501/921 (54%), Gaps = 80/921 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF+ GH ++PS+ ++ NDPTLMFTN+GM FK F G KP + V QK Sbjct: 6 IRELFLKFFESKGHVIVPSAPMVIKNDPTLMFTNAGMNQFKEFFLGNAKPKQKRVVDTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VGR HHT FEMLGN+SFG YFK AI AW+LLT+ + + + LY Sbjct: 66 CLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKREAITWAWELLTEVYKIPKENLY 125 Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +TV++ D+EA+ +WK+ ++ D I+ DNFW M + GPCGPCSEI D Sbjct: 126 VTVFEGSPEEGVPFDQEAYDIWKE--RIAEDHILLGNKKDNFWEMGDQGPCGPCSEIHVD 183 Query: 179 ---QGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 GE G + + + IEIWN VFM+F ++ LP ++DTGMG ER+ Sbjct: 184 IRSDGEKAKVAGRDLVNNDHPQVIEIWNNVFMEFNRKADGSLEKLPAQNVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY--------EGNNI-VNHRVIVDHLRSSSFL 285 VLQ K +NYD D+F LI E++T +Y E I + RVI DH+R+ SF Sbjct: 244 MVLQGKQSNYDTDVFTPLIHKVEEITKTRYTNGIQLTPEQEQINIAIRVISDHIRAVSFA 303 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG LP+N G GYV+RRI+RRA+ Y LG EP + L+ L +MG +PEL + Sbjct: 304 IADGQLPSNNGAGYVIRRILRRAIRYGFTFLGQKEPFIYKLVETLTKQMGGTFPELEKEF 363 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 LLI ++ E+ F +TL++GL++LD V+ D+ L+G AF+LYDT+G P D+ I Sbjct: 364 LLIVSVIKEEEASFLRTLEQGLLMLD-VMIQNASDKQLSGSKAFELYDTYGFPKDLTALI 422 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L RG+ +D SF + L++Q+ R+RA + + +G W L++ +FIGYD L Sbjct: 423 LSERGMT-LDEASFEEHLQKQKERSRA-AAQVKAGD----WVVLRDDE-EEEFIGYDTLE 475 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + + RKV QK G ++VF+ TPFY E Sbjct: 476 AMVRLVKYRKVESQK---------------------------DGTLYQLVFNTTPFYPEG 508 Query: 525 GGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+GD G +G + ITD KK + +H I E + R Sbjct: 509 GGQVGDRGTLQAANGELIYITDT-KKENNLIIH--IAEHLPENLNDPFKAEVHPMGRALA 565 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 NHSATHLLH AL +LG+HV Q GS ++P+ LRFD +H +T EL +E VN I Sbjct: 566 QSNHSATHLLHQALREVLGTHVEQKGSHVSPEALRFDFSHFAKLTPEELTEVERLVNKRI 625 Query: 644 AQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + +P+ R + + A+ +GA AL G KY ++VR++ S LCGGTHV +T Sbjct: 626 YEKIPLEEHRNIPIQQALEAGAMALFGEKYGEKVRMIQFG------ESRELCGGTHVKNT 679 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 G+I IVSE ++ AG+RRIEAIT A H + Q++ L+ + LK Q + + + Sbjct: 680 GDIWFFKIVSEGAVAAGVRRIEAITNAGALKHFLLQEKLLEEIKGSLKNPQ-DPIKSITN 738 Query: 763 IWEE----YRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKELKSVMDALQ 817 + EE +++L+ + ++ QL E I+ V ++ + ++D LK + L Sbjct: 739 LQEENARLHKELEQLKREQAKQLKGELKGEFVTISGVQCLTKRL-DLDIATLKDLAFMLG 797 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMA 875 ++++ I+ ++ KA +L + ++L +A + R K + GGGGG+P A Sbjct: 798 EEVKDAFILFGATQEDGKALLLCYINKELTQSKGLDAGKIVRELGKYI-QGGGGGQPFFA 856 Query: 876 QSGGPNGNKADQAIAGVASFL 896 +GG +A+ V + L Sbjct: 857 TAGGRKPEGIAEALEKVKTLL 877 >gi|306836213|ref|ZP_07469197.1| alanine--tRNA ligase [Corynebacterium accolens ATCC 49726] gi|304567934|gb|EFM43515.1| alanine--tRNA ligase [Corynebacterium accolens ATCC 49726] Length = 894 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 335/923 (36%), Positives = 504/923 (54%), Gaps = 68/923 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64 IR F + F +GHE++PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 6 IRERFTQHFVNSGHEVVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFSQGLATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW+LLTK+ F Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISNAWNLLTKDVEDGGFG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA ++W+ G+ ++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGVPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGMGLERM 233 G G G + RY+EIWNLVFMQ E+ K + I LPK +IDTG+G+ER+ Sbjct: 181 GSEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGTGKGDFEIVGELPKKNIDTGLGIERV 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNIVNHRVIVDHLRSSSFLIAD 288 A +LQ N Y+ DL + +I +E++TG Y + NNI RV+ DH R+ LI D Sbjct: 240 ACLLQGVDNVYETDLLRPVIDVAEELTGATYGEKATQENNI-RFRVVADHSRTGMMLILD 298 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGY+LRR++RR + A+LLG P M + + M +YPE+ + I Sbjct: 299 GVTPGNEGRGYILRRLLRRIIRSAKLLGAEGPTMERFMNTVMDTMTPSYPEIADNRERIL 358 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDE-ILNGDVAFKLYDTHGLPLDIMQ 402 +E++ F KTL+ G L D + +H K + +L+GD AF+L+DT+G P+D+ Sbjct: 359 RVAINEEKAFLKTLESGTKLFDEAVDDLRSTHRAKTQKVLSGDKAFELHDTYGFPIDLTL 418 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 ++ GL +D+ FN A+ EQR RA+A + G T+ + T F GY+ Sbjct: 419 EMAQEAGLD-VDMDGFNAAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGYE- 476 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 +L +G + I +V+ G+ V E G +VEV+ D +P YA Sbjct: 477 --------------------ELVSGANVI--GLVKDGQKVNEVHEGDEVEVILDHSPLYA 514 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+ D G L++ DVQK + ++VH A V G L MS+ ++D + R Sbjct: 515 ESGGQMADRGRISAGESLLEVNDVQKIGKKLWVHKASVTAGGLDLGMSVEASVDEKWRHG 574 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + HSATHL+H AL +LG Q GS P LRFD +++ ++ +++ I N Sbjct: 575 ATQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSQEQMEEIALITNQA 634 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I N+ V T + E+A A GA AL G Y ++VRVV + GG S LCGGTHV S+ Sbjct: 635 IDSNMAVNTIETSLEEAKAMGAMALFGENYGNQVRVVEI----GGPFSIELCGGTHVGSS 690 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LKV + R+ + Sbjct: 691 AEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGVSRELKVQSEELPERISQ 750 Query: 763 IWEEYRKLQL-IHAKRKLQLNVEDLS-CHKIADVNFMSHIISEV----DSKELKSVMDAL 816 + E + + I RK QL +VN + I ++ +L++V + Sbjct: 751 LSERLKAAEKEIEVLRKAQLTARASEFIDSATEVNGIKTITLQLPDGTSGGDLRTVATDI 810 Query: 817 QKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + +++ + +I+L + K K + + + + A D+ + + + G GGG+P M Sbjct: 811 RNRMKDTAAVIVLGAVDKGKFPFIAAATGKAVDEGVKAGDIVKRLGEYV-NGRGGGKPDM 869 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 AQ G A + V L+ Sbjct: 870 AQGSGTAPEGAQRGFEAVKDLLQ 892 >gi|259507362|ref|ZP_05750262.1| alanine--tRNA ligase [Corynebacterium efficiens YS-314] gi|259165073|gb|EEW49627.1| alanine--tRNA ligase [Corynebacterium efficiens YS-314] Length = 906 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 335/921 (36%), Positives = 502/921 (54%), Gaps = 66/921 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F F GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 22 IRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTATSI 80 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT + Sbjct: 81 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEGGYG 136 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA ++W+K G+ A++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 137 LDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 196 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233 G G G + + RY+EIWNLVFM+FE + ++ F LPK +IDTGMG+ER+ Sbjct: 197 GPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGVERV 255 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ DL + +I +E +TG Y +N + RVI DH R+ LI DG+ Sbjct: 256 ACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILDGVT 315 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + + I Sbjct: 316 PGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERILRVA 375 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G L + + + + G AF L+DT+G P+D+ ++ G Sbjct: 376 ITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAAEAG 435 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F + EQRSRA+A S G + + T F G++ L Sbjct: 436 LE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELESQ--- 491 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S V ++ G + EA GQ+VEV+ DQ+P YAE+GGQLG Sbjct: 492 --------------------SRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGGQLG 531 Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +GD + + I DVQK + ++VH A+V G L +V +D Q R H+ Sbjct: 532 DRGRILMGDTV-VDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQAHT 590 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LG Q GS P LRFD ++ +T +L I+ N+ + + Sbjct: 591 ATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTDWA 650 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + E+A A GA AL G Y D VRVV + GG S LCGGTHV + +I + Sbjct: 651 VNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIGPV 706 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767 ++ ESSI +G+RRIEA +G + ++L + +SL+S LK ++ R+ ++ ++ Sbjct: 707 ALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDKLK 766 Query: 768 ---RKLQLIHAKRKLQLNVEDL--SCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQ 821 +++ +H +R+L E+ +I + M + +D+ +L+++ L+ K+ Sbjct: 767 AAEKEIATLH-RRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKLS 825 Query: 822 SGIIMLVGISKEKKASVLIVV---TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +G ++V S+ + + + V T+ + R ++ +L +L + G GGG+P MAQ Sbjct: 826 NGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQG 884 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + + D A V + L+ Sbjct: 885 SGSDIDGLDAAFNAVRAELEN 905 >gi|25028304|ref|NP_738358.1| alanyl-tRNA synthetase [Corynebacterium efficiens YS-314] gi|23493588|dbj|BAC18558.1| putative alanyl-tRNA synthetase [Corynebacterium efficiens YS-314] Length = 926 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 335/921 (36%), Positives = 502/921 (54%), Gaps = 66/921 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F F GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 42 IRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTATSI 100 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT + Sbjct: 101 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEGGYG 156 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA ++W+K G+ A++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 157 LDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 216 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233 G G G + + RY+EIWNLVFM+FE + ++ F LPK +IDTGMG+ER+ Sbjct: 217 GPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGVERV 275 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ DL + +I +E +TG Y +N + RVI DH R+ LI DG+ Sbjct: 276 ACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILDGVT 335 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + + I Sbjct: 336 PGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERILRVA 395 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G L + + + + G AF L+DT+G P+D+ ++ G Sbjct: 396 ITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAAEAG 455 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F + EQRSRA+A S G + + T F G++ L Sbjct: 456 LE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELESQ--- 511 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S V ++ G + EA GQ+VEV+ DQ+P YAE+GGQLG Sbjct: 512 --------------------SRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGGQLG 551 Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +GD + + I DVQK + ++VH A+V G L +V +D Q R H+ Sbjct: 552 DRGRILMGDTV-VDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQAHT 610 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LG Q GS P LRFD ++ +T +L I+ N+ + + Sbjct: 611 ATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTDWA 670 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + E+A A GA AL G Y D VRVV + GG S LCGGTHV + +I + Sbjct: 671 VNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIGPV 726 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767 ++ ESSI +G+RRIEA +G + ++L + +SL+S LK ++ R+ ++ ++ Sbjct: 727 ALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDKLK 786 Query: 768 ---RKLQLIHAKRKLQLNVEDL--SCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQ 821 +++ +H +R+L E+ +I + M + +D+ +L+++ L+ K+ Sbjct: 787 AAEKEIATLH-RRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKLS 845 Query: 822 SGIIMLVGISKEKKASVLIVV---TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +G ++V S+ + + + V T+ + R ++ +L +L + G GGG+P MAQ Sbjct: 846 NGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQG 904 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + + D A V + L+ Sbjct: 905 SGSDIDGLDAAFNAVRAELEN 925 >gi|296394106|ref|YP_003658990.1| alanyl-tRNA synthetase [Segniliparus rotundus DSM 44985] gi|296181253|gb|ADG98159.1| alanyl-tRNA synthetase [Segniliparus rotundus DSM 44985] Length = 892 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 339/909 (37%), Positives = 486/909 (53%), Gaps = 70/909 (7%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 FL F KNGHEL PS+SLI +DP L+F N+GMV F F GQ P +T++QKCVR Sbjct: 10 FLGHFIKNGHELTPSASLI-LDDPNLLFVNAGMVQFVPYFLGQRTPPSPRLTSIQKCVRT 68 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRL 125 D++ VG T RH+TFF+M GNFSFG YFKERAIQLAW LLT + D RL Sbjct: 69 ----QDIEEVGVTTRHNTFFQMAGNFSFGDYFKERAIQLAWTLLTSSVADGGYGFDPERL 124 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 + TVY++D+EA LWKK++GL +++ R DN+WSM GP GPCSEI++D+G E Sbjct: 125 WATVYEDDDEAITLWKKVAGLPDERVQRRGPADNYWSMGIPGPSGPCSEIYYDRGPEYGA 184 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGMGLERMATVLQ 238 G P + E+ RY+EIWNLVFMQ E ++K + I LPK +IDTGMG+ER+A +LQ Sbjct: 185 DGGPEADED--RYLEIWNLVFMQNELAAIRSKTDFDIAGPLPKRNIDTGMGVERVAFLLQ 242 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANE 295 N Y+ D+ + +I +EQ+TG +Y + + RVI DH R++ LIADG+ P N+ Sbjct: 243 GVDNVYETDVVRPVISVAEQLTGRRYGAGSHADDTRFRVIADHARTAVMLIADGVNPGND 302 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RR + ARLLG TE L+ + + M YPEL IE T E+ Sbjct: 303 GRGYVLRRLLRRIVRAARLLGATELATPALVAQVVSSMSPMYPELSHEAARIERTAAGEE 362 Query: 356 ERFGKTLDRGLVLLDGVLS-HLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F T+D G L + V + LG +I+ G AF L+DT+G PL++ ++ GL + Sbjct: 363 HAFRNTIDSGSKLFEQVAAGALGSSRKIIPGTEAFALHDTYGFPLELTLEMAREVGLE-V 421 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 D F Q + EQR RA+A + ++ + T+F G+D L S F Sbjct: 422 DQEGFAQLMAEQRRRAKADAKSRKQAHEDQSAYQALLDGPPTEFTGFDEL--SSF----- 474 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 + +V G++ E +GQ+ +++ D+TP YAE+GGQL DTG Sbjct: 475 ----------------GTILGVVVDGQLANEVRAGQEAQIILDRTPLYAESGGQLADTGS 518 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 G +++DVQK A+ +F H V G T + +D + R + HS THL+ Sbjct: 519 ISAPGAFAEVSDVQKIAKRLFAHRVKVVEGAFATGQEVTAQVDSKWRHGANQGHSGTHLV 578 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 H AL +LG +Q GS P LRFD ++ + IE V + + + PV T + Sbjct: 579 HAALRQVLGPEATQAGSLNKPGYLRFDFRWHSALSPQAKQEIESVVGEAVETDYPVNTFV 638 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + + A A GA AL G Y +RVRVV + GG S LCGGTHV S+ ++ + ++ E Sbjct: 639 TDIDRARAMGALALFGENYGERVRVVEI----GGPFSMELCGGTHVPSSAKVGPVVLLGE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-- 771 SS +G RR+EA+ G AR HL + L ++AS + +V + E + L+ Sbjct: 695 SSTGSGTRRVEALVGYDAREHLAKERALLAAVASAVGAPAPEAPDKVRALVERVKTLERE 754 Query: 772 --------LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI--Q 821 L + + A V F+S +EVDS +L+ + ++++ + Sbjct: 755 IARQAQAQARAQAGNLAQSASPVRLCSGAVVEFVS---AEVDSDDLRGLAASMKEAFGSR 811 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG-- 879 + + L S EK A ++ A +L R A + G GGG+ +AQ G Sbjct: 812 AAVAALFHKSGEKVAFAVLATKAANELGAKAGELLRAVAPAV-NGRGGGKDDLAQGSGTD 870 Query: 880 PNGNKADQA 888 P+ A QA Sbjct: 871 PSAVPAAQA 879 >gi|329116323|ref|ZP_08245040.1| alanine--tRNA ligase [Streptococcus parauberis NCFD 2020] gi|326906728|gb|EGE53642.1| alanine--tRNA ligase [Streptococcus parauberis NCFD 2020] Length = 872 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 336/915 (36%), Positives = 500/915 (54%), Gaps = 72/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AEIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVTPENPRITNA 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FD + Sbjct: 67 QKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y D +++ W + G+ +I + +NFW + GP GP +EIFFD+GE Sbjct: 123 EKLYMTYYPADTDSYNRWIAL-GVEPSHLIPL--EENFWEIG-AGPSGPDTEIFFDRGES 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFE---QQNKQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + + E LP +IDTG GLER+ Sbjct: 179 FDPENIGIRLLEEDLENDRYIEIWNIVLSQFNADPEVPRSEYKELPNKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILP 292 V+Q N++ DLF +I+ E ++G Y+ G+N+ + +VI DH+R+ SF I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREVETLSGKTYDQDGDNM-SFKVIADHIRALSFAIGDGALP 297 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 NEGRGYVLRR++RRA+ + R LG + + L+ + M S YPE+++ K IE+ ++ Sbjct: 298 GNEGRGYVLRRLLRRAVMHGRRLGINQTFLYKLVMVVGQIMESYYPEILEKKDFIEKIVK 357 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ +++ G Sbjct: 358 REEETFARTIDAGSGHLDQLLAQLKEEGKDTLEGKDI-FKLYDTYGFPVELTEEMAEDAG 416 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F A++EQ+ RARA + GS G ++ S+F Sbjct: 417 YK-IDHDGFKAAMKEQQDRARAAVVKGGS-------------MGMQNETLANITELSEFN 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + K+ Q I + N S EAVS + +VFDQTPFYAE GGQ+ Sbjct: 463 YDREKLEGQLSVIVVDNERS--------------EAVSEGQALLVFDQTPFYAEMGGQVA 508 Query: 530 DTGCAIGDG--IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G + D + + DVQK G +H V L +L +D++ R + NH Sbjct: 509 DHGVILNDNGEVIANVIDVQKAPNGQALHTVEV-LANLSVGTKYMLKVDHKRRFAVEKNH 567 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHLLH AL I+G H +Q GS + LRFD TH + +T+ EL+ IE+ VN I + Sbjct: 568 TATHLLHAALHNIIGKHATQAGSLNEEEFLRFDFTHFEAVTAEELRRIEEEVNQQIWNAI 627 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T + E A + GA AL G KY VRVV + G +S LCGGTHVS+T EI L Sbjct: 628 KVQTIESDVETAKSMGAMALFGEKYGKLVRVVVI-----GDYSVELCGGTHVSNTSEIGL 682 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEE 766 IV E I +G RRI A+T ++A +++ LK +AS +K Q V +V + E+ Sbjct: 683 FKIVKEEGIGSGTRRILAVTSKQAFEAYRKEEDALKEIASTIKAPQIEQVPTKVASLNEQ 742 Query: 767 YRKLQL-IHAKRKLQLNVEDLSCHK-IADVNFMSHIISEV---DSKELKSVMDALQKKIQ 821 R+LQ + ++ + K + +VN ++I ++V D+ L++ D ++K Sbjct: 743 VRELQKEVAELKEKAAAAQAGDVFKDVKEVNGHTYIATQVSVSDAGALRTFADNWKQKDY 802 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 S I++LV E K +VL+ L N + + A ++ G GGG+P MA +GG + Sbjct: 803 SDILILVAAIGE-KVNVLVASKSKELHAGNVI---KALAPIV-SGRGGGKPDMAMAGGSD 857 Query: 882 GNKADQAIAGVASFL 896 +K + + V + L Sbjct: 858 ASKINDLLNEVPNQL 872 >gi|312864171|ref|ZP_07724405.1| alanine--tRNA ligase [Streptococcus vestibularis F0396] gi|311100172|gb|EFQ58381.1| alanine--tRNA ligase [Streptococcus vestibularis F0396] Length = 872 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 331/911 (36%), Positives = 496/911 (54%), Gaps = 70/911 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P +T Sbjct: 7 AQIRQMWLDFWKSKGHAVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT FD + Sbjct: 67 QKAIRT----NDIENVGKTARHHTMFEMLGNFSVGDYFRDEAIEWGYELLTSPEWFDFPK 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T Y +D++++ W G+ +I I DNFW + GP GP +EIFFD+GE Sbjct: 123 DKLYMTYYPDDKDSYNRWIA-CGVEPSHLIPI--EDNFWEIG-AGPSGPDTEIFFDRGED 178 Query: 183 IPGGLPG-----SSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGMGLERMA 234 G E +RYIEIWN+V QF + E LP +IDTG GLER+ Sbjct: 179 FDPDNIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLV 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN-NIVNHRVIVDHLRSSSFLIADGILPA 293 V+Q N++ DLF +I+ E+++G Y+ + + ++ +VI DH+RS +F I DG LP Sbjct: 239 AVMQGAKTNFETDLFMPIIREIEKMSGKTYDPDGDTMSFKVIADHIRSLAFAIGDGALPG 298 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + R LG ++ + L+P + M S YPE+++ K IE+ ++ Sbjct: 299 NEGRGYVLRRLLRRAVMHGRRLGISDAFLYKLVPTVGQIMESYYPEVLEKKDFIEKIVKR 358 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E F +T+D G +LD +L++L K L G FKLYDT+G P+++ +++ G Sbjct: 359 EEETFARTIDAGSSMLDELLANLKKSGKGTLEGKDIFKLYDTYGFPVELTEELAEDEGFK 418 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F A++EQ+ RARA + GS G ++ S+F+ E Sbjct: 419 -IDHEGFKAAMKEQQERARASVVKGGS-------------MGMQNETLANITEPSEFLYE 464 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S + IV + SGQ + +VF+QTPFYAE GGQ+ D Sbjct: 465 -------------AETAESHLSVIVADDARHDSVNSGQAL-LVFEQTPFYAEMGGQVADH 510 Query: 532 GCAIGDG---IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 G I D + ++ DVQ+ G +H VE G L + L ID+ R ++ NH+ Sbjct: 511 GT-ISDAAGTVVARVVDVQRAPNGQALHTVEVE-GELVVGANYKLEIDHTRRHRVMKNHT 568 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL I+G H Q GS + LRFD TH + +T EL++IE+ VN+ I + P Sbjct: 569 ATHLLHAALHNIVGDHAVQAGSLNEQEFLRFDFTHFEAVTPEELRAIEEQVNEEIWKATP 628 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + + A + GA AL G KY VRVVS+ G +S LCGGTHV++T EI + Sbjct: 629 VTTIETDIDTAKSMGAMALFGEKYGKNVRVVSI-----GDYSVELCGGTHVANTAEIGMF 683 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEY 767 IV E I +G RRI A+T + A +++ LK++A+ LK Q V +V + E+ Sbjct: 684 KIVKEEGIGSGTRRILAVTSREAYLAYREEEDALKAIAATLKAPQLKEVPNKVASLQEQL 743 Query: 768 RKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVMDALQKKIQS 822 LQ +A K + + + N + +I S+V D+ L++ D ++ S Sbjct: 744 HALQKENAALKEKAAAAAAGDVFKDVKEANGVRYIASQVEVSDAGALRTFADQWKQADYS 803 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L E K +VL+ + N + ++ A ++ G GGG+P MA +GG + Sbjct: 804 DVLVLAAHIGE-KVNVLVASKSKGVHAGNVI---KVLAPIV-SGRGGGKPDMAMAGGSDA 858 Query: 883 NKADQAIAGVA 893 N + VA Sbjct: 859 NGIQDLLLAVA 869 >gi|41018232|sp|Q8FT23|SYA_COREF RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 890 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 335/921 (36%), Positives = 502/921 (54%), Gaps = 66/921 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F F GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 6 IRERFTNHFVNAGHTAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFANGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT + Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTNPVEEGGYG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA ++W+K G+ A++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233 G G G + + RY+EIWNLVFM+FE + ++ F LPK +IDTGMG+ER+ Sbjct: 181 GPKY-GNEGGPAVDDSRYLEIWNLVFMEFERGEGTGKDSFEIIGELPKKNIDTGMGVERV 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ DL + +I +E +TG Y +N + RVI DH R+ LI DG+ Sbjct: 240 ACILQGVENVYETDLLRPVIDVAETLTGATYGRDNTADIRFRVIADHSRTGMMLILDGVT 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + + I Sbjct: 300 PGNEGRGYILRRLLRRIIRSARLLGATGETMEKFMNTIMDTMTPSYPEIAENRERILRVA 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G L + + + + G AF L+DT+G P+D+ ++ G Sbjct: 360 ITEERAFLKTLVSGTHLFEEAAASIKSSGSTTVAGAQAFALHDTYGFPIDLTLEMAAEAG 419 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F + EQRSRA+A S G + + T F G++ L Sbjct: 420 LE-VDVEGFESLMAEQRSRAKADSQAKKHGHADLSIYREWVDNHPTVFTGFEELESQ--- 475 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S V ++ G + EA GQ+VEV+ DQ+P YAE+GGQLG Sbjct: 476 --------------------SRVLGLLSDGTRINEAAEGQEVEVILDQSPLYAESGGQLG 515 Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +GD + + I DVQK + ++VH A+V G L +V +D Q R H+ Sbjct: 516 DRGRILMGDTV-VDIQDVQKIGKKLWVHKAVVANGGLAVGDEVVAAVDKQWRHAARQAHT 574 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LG Q GS P LRFD ++ +T +L I+ N+ + + Sbjct: 575 ATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTPEQLNQIQAITNEAVDTDWA 634 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + E+A A GA AL G Y D VRVV + GG S LCGGTHV + +I + Sbjct: 635 VNTIETSLEEARAMGAMALFGENYGDLVRVVEI----GGPFSMELCGGTHVEHSSQIGPV 690 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767 ++ ESSI +G+RRIEA +G + ++L + +SL+S LK ++ R+ ++ ++ Sbjct: 691 ALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAESLSSILKTPSTDLPERISQLLDKLK 750 Query: 768 ---RKLQLIHAKRKLQLNVEDL--SCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQ 821 +++ +H +R+L E+ +I + M + +D+ +L+++ L+ K+ Sbjct: 751 AAEKEIATLH-RRELAAKSEEFITGAEEINGIRAVMVRVQDGLDAGDLRTLATTLRDKLS 809 Query: 822 SGIIMLVGISKEKKASVLIVV---TEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 +G ++V S+ + + + V T+ + R ++ +L +L + G GGG+P MAQ Sbjct: 810 NGEGLVVVASRSEDGTKVPFVAGATKQAVARGVHSGNLIKLIGSYI-DGRGGGKPDMAQG 868 Query: 878 GGPNGNKADQAIAGVASFLKK 898 G + + D A V + L+ Sbjct: 869 SGSDIDGLDAAFNAVRAELEN 889 >gi|295396122|ref|ZP_06806305.1| alanine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030] gi|294971063|gb|EFG46955.1| alanine--tRNA ligase [Brevibacterium mcbrellneri ATCC 49030] Length = 884 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 332/910 (36%), Positives = 495/910 (54%), Gaps = 56/910 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I+ +LEFF+ GH ++PS+S+I +DP+++F +GMV F TG+E + T+ Sbjct: 3 TAEIKRRWLEFFESKGHTVVPSASVI-SSDPSILFNIAGMVQFIPYLTGREPAPFPRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 VQKCVR D++ VG+T RH TFF+M GNFSFG YFK AI +AW+LLT D Sbjct: 62 VQKCVRTA----DIEEVGQTTRHGTFFQMNGNFSFGDYFKREAISMAWELLTTLEDKGGL 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D L++TV+ +D + LW + + + ++I DNFW + GP G CSEI+FD Sbjct: 118 GFDPNLLWVTVHQDDAASIDLWLEETSMPRERIQMRGNEDNFWHTGQPGPGGYCSEIYFD 177 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLER 232 +G G G + +RYIEIWNLVFM+FE + + LP +IDTGMGLER Sbjct: 178 RGPAY-GKEGGPVADEDRYIEIWNLVFMEFELSEVRTKVDFDIKGDLPAKNIDTGMGLER 236 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 +A + Q N Y+ID +I+ +E+++G Y N + V RV+ DH+RS+ +I DG+ Sbjct: 237 VAFLKQGVENMYEIDEVYPVIKKAEELSGRAYGTNHDDDVRMRVVADHVRSALVIIGDGV 296 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P NEGRGY+LRR++RR++ RLLG T+P++ HLLP M +YPEL I + Sbjct: 297 RPGNEGRGYILRRLLRRSIRAMRLLGVTQPVLPHLLPVSKDAMKQSYPELDTDFDRISKI 356 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+ F +TL+ G LL ++ +GK ++G VAF L+DTHG P+D+ ++ G+ Sbjct: 357 AYAEETAFLRTLESGTQLLTRTVAEVGKGGTIDGAVAFTLHDTHGFPIDLTVEMAHEAGV 416 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D+ F +EEQR RA+A + G +S + G ++F+GYD L Sbjct: 417 E-VDVDGFKAHMEEQRQRAKADAKSKKGGGANLTAYSHLLEAGTSEFVGYDNLN------ 469 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + V+ I++ GE V A +G V+VV D TPFYAE+GGQ D Sbjct: 470 -----------------TLATVRGIIKDGEAVPVAHAGDTVDVVLDITPFYAESGGQTAD 512 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G G ++ ++TDVQ G+ H VE G L T + +D +R Q HSAT Sbjct: 513 IGHLTGPDLKARVTDVQNILAGLPTHKVTVETGELETGALITAQVDPDHRYQAQQAHSAT 572 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL +LGS+ +Q GS P LRFD ++ + ++ A + IE+ N + N V Sbjct: 573 HLIHAALREVLGSNATQAGSLNNPGYLRFDYSYPEALSPAARQEIEECANTAVRDNFEVG 632 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + E+A SGA AL G +Y + VRVV + G S LCGGTHV+ T EI + + Sbjct: 633 YDFLPFEEAKKSGAMALFGERYPEIVRVVDIN----GTWSRELCGGTHVTRTAEIGPISL 688 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEE 766 SE+S+ +G RRIEA G A L + + L+ LKV V RV + I E Sbjct: 689 TSEASVGSGTRRIEASVGLDAMKQLARERSTVAQLSELLKVPGPEVYERVTGLMDRIKEA 748 Query: 767 YRKLQLIHAKRKL-QLNVEDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQ--S 822 R + ++ ++ L + S K+ ++ + +V ++ +++S + ++ ++ + Sbjct: 749 ERTIAHLNQEKVLARATDAAASAQKLGPATVVTTELGDVANAADVRSFVLDVRNRLNDPA 808 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 +I VG++ K A V+ V E A L + K L GGGGGG+P +AQ GG + Sbjct: 809 HVIAAVGLANGKPAVVIAVGPEAQKAGLKAGALVTSACKTL-GGGGGGKPDLAQGGGQDA 867 Query: 883 NKADQAIAGV 892 K QA V Sbjct: 868 TKVSQAFQDV 877 >gi|78214024|ref|YP_382803.1| alanyl-tRNA synthetase [Synechococcus sp. CC9605] gi|123577380|sp|Q3AGN4|SYA_SYNSC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|78198483|gb|ABB36248.1| alanyl-tRNA synthetase [Synechococcus sp. CC9605] Length = 889 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 334/891 (37%), Positives = 498/891 (55%), Gaps = 57/891 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL F+ + GH+ + S+SLIP +DPT++ T +GM+PFK +F GQ E+P +A T+ Q Sbjct: 20 IREAFLNFYAERGHKRMASASLIP-DDPTVLLTIAGMLPFKPVFLGQQERPAPRA-TSSQ 77 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVGRT RHHTFFEMLGNFSFG YFK+RAI+ AW+L T + +D + L Sbjct: 78 KCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQRAIEWAWELSTGVYGIDPKNL 133 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + G Sbjct: 134 VVSVFREDDEAELIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL-G 192 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 E+ +R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ NNY+ Sbjct: 193 DEDIDLEDDDRFIEFYNLVFMQYNRDAEGTLTPLANRNIDTGMGLERMAQILQKVPNNYE 252 Query: 246 IDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DL LIQA+ + G+ Y N + +VI DH R+ + LI DG+ +N GRGY+LR Sbjct: 253 TDLIFPLIQAAADLAGVDYHQLNDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYILR 312 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RR + + RLLG +P ++ + A + A+P +I+ + +I L+ E+ RF +TL Sbjct: 313 RLLRRVVRHGRLLGIDKPFLVTMGEAAIALLKGAHPSVIERQEVILAELQREEARFLETL 372 Query: 363 DRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 +RG LL VL+ K ++G AF+LYDT+G PL++ Q+I +GLA +D+ F A+ Sbjct: 373 ERGEKLLAEVLAS--KPTQISGAQAFELYDTYGFPLELTQEIAEEQGLA-VDLDGFEAAM 429 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPI 482 EEQR RA+A ++ + + I + ++ AT F GY+ L Sbjct: 430 EEQRQRAKAAAVSIDLTLQDAIDQVVADQ-AATCFEGYEALDH----------------- 471 Query: 483 DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQ 542 +S V+A+V G A +G V+VV D TPFY E GGQ+GD G G + ++ Sbjct: 472 ------ASCVQALVVNGGPSTTAKAGDAVQVVLDTTPFYGEGGGQVGDRGVLAGSDLIVR 525 Query: 543 ITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG 602 I V + + +FVH VERG L ++ +D RR+ NH+ATHLL AL ++ Sbjct: 526 IESVSRSRD-VFVHAGRVERGELALGDTVKAQVDRACRRRAQANHTATHLLQAALKQVVD 584 Query: 603 SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS 662 + Q GS + D LRFD +T +L+ +E +N I + + + M + A A+ Sbjct: 585 PGIGQAGSLVDFDRLRFDFHCPTAVTPDQLQQVETLINGWINEAHALQVQEMAIDQAKAA 644 Query: 663 GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 GA A+ G KY D VRVV V S LCGGTHV++T EI L IV+ES + AGIRR Sbjct: 645 GAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVTNTAEIGLFKIVAESGVAAGIRR 699 Query: 723 IEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK-----LQLIHAKR 777 IEA+ G ++L +D +K L K +V RV + EE + Sbjct: 700 IEAVAGPAVLAYLNERDVVVKQLGDRFKAQPAEIVDRVAALQEELKATGKALAAAQAELA 759 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 + + D + + VD L+ +L ++ G +++G + Sbjct: 760 VAKAGALAAKAEAVGDFQLLVERLDGVDGAGLQGAAQSLADQLGDGAAVVIGGLPDPGDM 819 Query: 838 VLIVVTEDLLDRFNAVDLARLSAKVLGG------GGGGGRPHMAQSGGPNG 882 +++ + A L + K +GG GGGGGRP++AQ+GG +G Sbjct: 820 GKVILVAAFGQQVIAAKLQ--AGKFIGGIAKQCGGGGGGRPNLAQAGGRDG 868 >gi|221632736|ref|YP_002521957.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159] gi|221155742|gb|ACM04869.1| alanyl-tRNA synthetase [Thermomicrobium roseum DSM 5159] Length = 878 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 329/908 (36%), Positives = 502/908 (55%), Gaps = 68/908 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR F+EFF + GH +PSSSLIP +DPT++ T +GM F G E+P + +T++ Sbjct: 4 SEIRRAFIEFFAERGHVQVPSSSLIP-SDPTVLLTTAGMQQMVPYFLGLERPPHTRLTSI 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC R D+D VG + H TFFEMLGNFS G YFK AI AW+ LTK + R Sbjct: 63 QKCFRT----VDIDEVGDES-HLTFFEMLGNFSIGDYFKAEAISWAWEFLTKWLGVPAER 117 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQG--- 180 Y TV+ +DE +++ W+ G+ ++I ++ DN+W + TGP GP SEI +D+G Sbjct: 118 WYPTVHPDDEFSYQYWRDQIGVPTERIFKL--EDNWWGPVGATGPNGPDSEIHYDRGMEY 175 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 EC PG G R++E WNLVFM+F ++ + LP+ +IDTGMGLER++ Sbjct: 176 GCGRTECGPGCDCG------RFLETWNLVFMEFYKEADGTQRPLPRKNIDTGMGLERISL 229 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPA 293 ++Q + ++ DLF ++ + + G++Y+ V+ RVI DH R +FL+ DG+ P+ Sbjct: 230 IMQGVGSVFETDLFYPILSEAATIAGVRYKEQARVDRSLRVIADHARGVTFLVGDGVFPS 289 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RRA+ + +LLG P + L+ + S YP L + + I +R Sbjct: 290 NEGRGYVLRRVLRRAVRHGKLLGIERPFLNQLVDVVIELFSSYYPNLNEQRERIHRVIRH 349 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+E F +TL GL + +L L + +++L GD AF+LYDT+G PL++ +++ G Sbjct: 350 EEEHFQRTLSAGLSRFEALLDQLQRSGEQVLPGDEAFRLYDTYGFPLELTEELARESGFT 409 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLKEKYGATQFIGYDLLRGSKF 468 +D F +ALE QR +RA S+G + T + ++ E+ T+F+GYD L Sbjct: 410 -VDRAGFERALERQRELSRA-SVGRFADTQRQRAELYAQFSER--PTEFVGYDRLE---- 461 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 ++ + I+ ++ +EA +G+++E++ D+TPFY EAGGQ+ Sbjct: 462 -------------------TTATIVGILGLSDLRQEAEAGEEIELILDRTPFYGEAGGQV 502 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG + + + + D Q+ + VH V G +R S+ +D + R + NH+ Sbjct: 503 GDTGEIVAETGIVTVEDTQRPTPELIVHRGRVREGSIRVGQSVRAIVDAERRAAIRRNHT 562 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLLH AL +LG H Q GS + PD LRFD +H + ++ +L+ IE+ VN+ I ++L Sbjct: 563 ATHLLHAALRRVLGEHAVQAGSLVAPDRLRFDFSHHESVSPEQLRRIEEMVNEQIVRDLR 622 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V R + DA+A GA AL G KY D VRVVS+ DG S LCGGTHVS TGEI Sbjct: 623 VEVRYLPLRDALAEGAIALFGEKYGDTVRVVSI---DG--FSKELCGGTHVSHTGEIGAF 677 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I E+S+ +GIRRIEA+TG A + + A L V + +E + ++ R Sbjct: 678 LITDETSVASGIRRIEAVTGLAAARLARTLIDVSEEAARRLHVVPEQLPEAIERLQQQVR 737 Query: 769 KLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE---LKSVMDALQKKIQSG 823 Q + L + A ++ + + ++ L+ V D L+ I SG Sbjct: 738 DQQREIERLAADLAAARLAPLVERAARIDGFRVVSARIEVPSLDVLRRVGDRLRDAIGSG 797 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 +++L G + E + +L + T D + R + L GG GGGRP +AQ GG + + Sbjct: 798 VVIL-GTAIENRPMILAMATPDAVQRGVHAGQVVQAVTPLLGGRGGGRPDIAQGGGADVS 856 Query: 884 KADQAIAG 891 + D+A+A Sbjct: 857 RLDEALAA 864 >gi|227833217|ref|YP_002834924.1| Alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975] gi|262184203|ref|ZP_06043624.1| alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975] gi|227454233|gb|ACP32986.1| Alanyl-tRNA synthetase [Corynebacterium aurimucosum ATCC 700975] Length = 895 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 331/907 (36%), Positives = 493/907 (54%), Gaps = 67/907 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F + F K GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 6 IRERFTQHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFANGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT + Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTNSVEDGGLG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA +W G+ ++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPERLWVTVYLDDDEAADIWHDKIGVPRERIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233 G G G E+ +RY+EIWNLVFMQ E + N + LPK +IDTGMG+ER+ Sbjct: 181 GPEY-GQDGGPVEDDDRYMEIWNLVFMQNERGEGIGKGNFEIIGELPKKNIDTGMGIERV 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADG 289 A +LQ N Y+ DL + +I +E++TG KY +++ RV+ DH R+ LI DG Sbjct: 240 ACILQGVDNVYETDLLRPVIDVAEELTGAKYVPDAPKEDLIRFRVVADHSRTGMMLILDG 299 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P NEGRGY+LRR++RR + A+LLG M + + M +YPE+ + + I Sbjct: 300 VTPGNEGRGYILRRLLRRIIRSAKLLGAKGETMERFMNTIMDTMTPSYPEIAENRERILR 359 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL------GKDEILNGDVAFKLYDTHGLPLDIMQD 403 +E++ F KTL+ G L D ++ L ++L+G+ AF+L+DT+G P+D+ + Sbjct: 360 VALAEEKAFLKTLESGTKLFDEAVTELKNTSRAATPKVLSGEKAFELHDTYGFPIDLTLE 419 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + GL +D+ F+ A+ EQR RA+A + G + + T F GY+ L Sbjct: 420 MAQEAGLT-VDMEGFDAAMGEQRRRAKADNQAKKHGHADLSLYREWVDNHPTLFTGYETL 478 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 + + KVL +V+ GE V E +G VEV+ DQ+P YAE Sbjct: 479 ------ESEAKVL-----------------GLVRDGEKVSEVQAGDTVEVILDQSPLYAE 515 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 AGGQ D G I L++ DVQK + ++VH A V G L + +D Q R Sbjct: 516 AGGQTADRGRIIAGETLLEVNDVQKIGKKLWVHKATVTAGGLELGNGVTAAVDEQWRHGA 575 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 HSATHL+H AL +LG Q GS P LRFD ++ +T +L I N + Sbjct: 576 VQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTDQLTQEQLDEIALVTNQAV 635 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 Q+ PV T + + A GA AL G Y VRVV E GG S LCGGTHV +T Sbjct: 636 DQHFPVNTIETSLDKAKEMGAMALFGENYGSEVRVV----EMGGPFSIELCGGTHVKNTA 691 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LKV ++ R+ ++ Sbjct: 692 EIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPERIAQL 751 Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHK-IADVNFMS-HIISEVDSKELKSVMDALQ 817 E+ +++ +H + + E +S K I D ++ + V+ +L+++ ++ Sbjct: 752 TEKLKAAEKQIAELHKAQLMSQTAEMISTAKTINDFTLVAVKLPKGVNGGDLRTLASDIK 811 Query: 818 KKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 ++ + +++L ++ K ++ T+ +R A DL +L + + G GGG+P M Sbjct: 812 NRLGDVAAVVVLASENEGGKMPFIVGATKAANERGVKAGDLVKLVSGYV-DGKGGGKPDM 870 Query: 875 AQSGGPN 881 AQ G N Sbjct: 871 AQGSGVN 877 >gi|313471497|sp|B8B4H5|SYAP_ORYSI RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|218197887|gb|EEC80314.1| hypothetical protein OsI_22356 [Oryza sativa Indica Group] Length = 996 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 336/918 (36%), Positives = 510/918 (55%), Gaps = 94/918 (10%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +IR FL+F+ GH++LPSSSL+P +DPT+ T +GM+ FK IF G+E TT Q Sbjct: 103 AIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCATTSQ 161 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI AW+L TKEF L RL Sbjct: 162 KCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKEFGLPPERL 217 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 +I+V+ +D+EAF +W G+ ++I R+ +DNFW+ TGPCGPCSEI++D P Sbjct: 218 WISVFQDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPCGPCSEIYYD---FYPE 274 Query: 186 GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 ++ G+ R+IE +NLVFMQ+ +++ L + +IDTGMGLERMA +LQ+ NN Sbjct: 275 RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPNN 334 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL +I+ + + + Y + N ++I DH+R+ +LI+DG++P+N GRGYV Sbjct: 335 YETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGYV 394 Query: 301 LRRIMRRAMCYARLLGYTE-----------PLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 +RR++RR + RL+G P + + +L TE+ P++ + I Sbjct: 395 VRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEID---PDVESRRKSILG 451 Query: 350 TLRSEDERFGKTLDRG-------LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 L+ E+ RF +TL+RG L + G L+G F LYDT+G P++I Sbjct: 452 ELQREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITA 511 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 +I RG+ +D+ F+ +E QR +++A + + L G +I S+ + T+F+GY Sbjct: 512 EIAGERGVI-VDMKGFDMEMENQRKQSQAAHNVVKLSVGNETEIVKSIPD----TEFLGY 566 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D L +++VK ++ G V G VE+ D+TPF Sbjct: 567 DSL-----------------------SATAVVKGLLVNGNSVNVVSEGSDVEIFLDRTPF 603 Query: 521 YAEAGGQLGDTGCAIGDGIR-------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 YAE+GGQ+GD G G ++I DVQK IFVH +++G + + Sbjct: 604 YAESGGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEIDA 663 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D + R+ +H+ATHLL AL +I+GS SQ GS + D LRFD +P++ EL Sbjct: 664 AVDAKLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNFHRPLSEEELM 723 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 IE VN ++ + T++M+ +DA +GA A+ G KY ++VRVV V GV S L Sbjct: 724 KIESLVNQWVSSATHLETKVMDLQDAKNAGAIAMFGEKYGEQVRVVEVP----GV-SMEL 778 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHVS+T EI I+SE I +G+RRIEA+ G ++ +D ++ L S LKV Sbjct: 779 CGGTHVSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCARDNYMRCLCSSLKVKA 838 Query: 754 GNVVGRVEEIWEEYR--KLQLIHAKRKLQ-LNVEDLS--CHKIADVNFMSHIISEVDSKE 808 +V GRVE I EE R + ++ + K+ L L+ I + + + +VD+ Sbjct: 839 EDVNGRVETILEELRTTRNEVSSLRSKIAVLKAASLANKATTIDNTRVVVENMGDVDADG 898 Query: 809 LKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG-- 865 LKS + L ++ +++G S + K S++ + + V + + K +GG Sbjct: 899 LKSAAEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGV------VKMGIQAGKFVGGIA 952 Query: 866 ----GGGGGRPHMAQSGG 879 GGGGG+P+ AQ+GG Sbjct: 953 KLCGGGGGGKPNFAQAGG 970 >gi|317507135|ref|ZP_07964895.1| tRNA synthetase class II [Segniliparus rugosus ATCC BAA-974] gi|316254581|gb|EFV13891.1| tRNA synthetase class II [Segniliparus rugosus ATCC BAA-974] Length = 830 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 320/829 (38%), Positives = 457/829 (55%), Gaps = 60/829 (7%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 FL F KNGHEL PS+SLI +DP L+F N+GMV F F GQ P +T+VQKCVR Sbjct: 10 FLGHFIKNGHELTPSASLI-LDDPNLLFVNAGMVQFVPYFLGQRTPPSPRMTSVQKCVRT 68 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRL 125 D++ VG T RH+TFF+M GNFSFG YFKE AIQ AW LLT + D RL Sbjct: 69 ----QDIEEVGVTTRHNTFFQMAGNFSFGDYFKEGAIQFAWSLLTSSVEDGGYGFDPNRL 124 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 + TVY++D+EA +LWKK++GL ++I R DN+WSM GP GPCSEI+FD+G G Sbjct: 125 WATVYEDDDEAIELWKKVAGLPDERIQRRGPADNYWSMGIPGPSGPCSEIYFDRGPEF-G 183 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGMGLERMATVLQE 239 G + +RY+EIWNLVFMQ E ++K + I LPK +IDTGMG+ER+A +LQ Sbjct: 184 ADGGPEADEDRYLEIWNLVFMQNELAAIRSKTDFDIAGPLPKRNIDTGMGVERVAFLLQG 243 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEG 296 N Y+ D+ + +I +EQ+TG +Y + + RVI DH R++ LI DG+ P N+G Sbjct: 244 VDNVYETDVVRPVIDCAEQLTGRRYGAGSHADDTRFRVIADHARTAVMLIGDGVNPGNDG 303 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RR + ARLLG TE + L+ + M YPEL++ IE E+ Sbjct: 304 RGYVLRRLLRRIVRSARLLGATEMVTPALVREVVAAMSPMYPELLREAPRIERIAAGEET 363 Query: 357 RFGKTLDRGLVLLD----GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 F T+D G L + GV S GK ++ G AF L+DT+G PL++ ++ GL Sbjct: 364 AFRNTIDSGSKLFEQVAEGVRSSSGK--VIPGAEAFALHDTYGFPLELTLEMAQEVGLQ- 420 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL--RGSKFMK 470 +D F + + EQR+RA+A + ++ + AT+F GYD L RGS Sbjct: 421 VDQEGFARLMAEQRNRAKADAKARKQAHADQSVYHELLDGPATEFTGYDELSSRGS---- 476 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + IV G++ E +GQ+ +++ D+TP YAE+GGQL D Sbjct: 477 ---------------------ILGIVVDGQLANEVHAGQEAQIILDRTPLYAESGGQLAD 515 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG G +TDVQ+ A+ +F H V G + +D + R + HS T Sbjct: 516 TGSISAPGAHADVTDVQRIAKRLFTHRVKVTEGAFAVGAEVTAQVDSKWRHGANQGHSGT 575 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HL+H AL +LG +Q GS P LRFD ++ + IE V + + + PV Sbjct: 576 HLVHAALRQVLGPEATQAGSLNKPGYLRFDFRWHSALSPETRQDIESVVAEAVETDYPVN 635 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T + + + A + GA AL G Y +RVRVV + GG S LCGGTHV+S+G+I + + Sbjct: 636 TFVTDIDRARSMGALALFGENYGERVRVVEI----GGPFSMELCGGTHVASSGKIGPVVL 691 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 + ESS +G RR+EA+ G AR HL + L ++AS + +V + E + L Sbjct: 692 LGESSTGSGTRRVEALVGYDAREHLAKERTLLAAVASAVGSPAAEAPDKVRALVERVKTL 751 Query: 771 QL-IHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEVDSKELKSVMDALQ 817 + I + + Q + + A V + + +EVDS +L+ + +L+ Sbjct: 752 EREIARQAQAQARAQAVGLAATAVPVGAVEFVGAEVDSDDLRGLATSLK 800 >gi|254366760|ref|ZP_04982803.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis str. Haarlem] gi|134152271|gb|EBA44316.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis str. Haarlem] Length = 904 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 343/920 (37%), Positives = 504/920 (54%), Gaps = 62/920 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFGG F+ R I+LAW LLT + LD Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGGLFQTRVIELAWALLTNSLAAGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 R++ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGP SEI++D+G Sbjct: 121 PERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMA 234 E P G P SE+ RY+E+WNLVFMQ E +++ Q LP+ +IDTGMG+ER+A Sbjct: 181 EFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGIL 291 VLQ+ N Y+ DL + +I +V Y+ GN + V +R+I DH R+++ LI DG+ Sbjct: 239 LVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVS 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + A+LLG ++ L+ + MG +YPEL+ I Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L + V S K +L+G AF L+DT+G P+++ ++ G Sbjct: 359 VAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D I F + + EQR RA+A + + + GAT+F G+D LR S+ Sbjct: 419 LQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQAR 476 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 V ++ P+ + +GV+ A GQ+VE+V D+TP YAE+GGQ+ Sbjct: 477 ILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESGGQIA 522 Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D G G G R +TDVQK A+ ++VH VE G +++ +D RR + Sbjct: 523 DEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQ 582 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG + Q GS P LRFD P+T + +E+ N+ + Sbjct: 583 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQA 642 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + A A GA AL G Y D VRVV E GG S LCGGTHVS+T +I Sbjct: 643 DFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQI 698 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+ ESSI +G+RR+EA G + HL + + LAS LKV V RV + E Sbjct: 699 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 758 Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819 R + + ++ +I +V ++ +S + + +L+S++ ++ K Sbjct: 759 RLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGK 818 Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + S ++ I++ + +V V +DL R N DL + A + G GGG+ + Sbjct: 819 LGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADL 875 Query: 875 AQSGGPNGNKADQAIAGVAS 894 AQ G N D A+ V S Sbjct: 876 AQGSGKNPTGIDAALDAVRS 895 >gi|10177227|dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana] Length = 954 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 341/921 (37%), Positives = 509/921 (55%), Gaps = 97/921 (10%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 SIR FLEFF GH++LPSSSL+P DPT++ T +GM+ FK IF G+ TT Q Sbjct: 58 SIRRRFLEFFASRGHKVLPSSSLVP-EDPTVLLTIAGMLQFKPIFLGKVPREVPCATTAQ 116 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 +C+R NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L R+ Sbjct: 117 RCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPANRV 172 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++++Y++D+EAF++WK G+S ++I R+ DNFW+ TGPCGPCSE+++D P Sbjct: 173 WVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTSGPTGPCGPCSELYYD---FYPE 229 Query: 186 -GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKM---SIDTGMGLERMATVLQE 239 G + G+ R+IE +NLVFMQ+ NK E +L + +IDTG+GLER+A +LQ+ Sbjct: 230 RGYDEDVDLGDDTRFIEFYNLVFMQY---NKTEDGLLEPLKQKNIDTGLGLERIAQILQK 286 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296 NNY+ DL +I ++ + Y+ N + +VI DH+R+ +LI+DG+ P+N G Sbjct: 287 VPNNYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMRAVVYLISDGVSPSNIG 346 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL---------IQAKLLI 347 RGYV+RR++RRA+ + LG + +L A + EL ++A +I Sbjct: 347 RGYVVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIELSTYIDSDVKLKASRII 406 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL------GKD-EILNGDVAFKLYDTHGLPLDI 400 EE +R E+ F KTL+RG LLD L+ KD L+G AF LYDT G P++I Sbjct: 407 EE-IRQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGKDAFLLYDTFGFPVEI 465 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 ++ RG++ ID+ F +E QR +++ AH++ T + + + T+F+G Sbjct: 466 TAEVAEERGVS-IDMNGFEVEMENQRRQSQAAHNV---VKLTVEDDADMTKNIADTEFLG 521 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L ++VK+++ G+ V G +VEV+ D+TP Sbjct: 522 YDSL-----------------------SARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTP 558 Query: 520 FYAEAGGQLGDTG--CAIGDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 FYAE+GGQ+ D G DG + ++++DVQK + IFVH V+ G L + Sbjct: 559 FYAESGGQIADHGFLYVSSDGNQEKAVVEVSDVQKSLK-IFVHKGTVKSGALEVGKEVEA 617 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D R++ ++H+ATHLL AL ++G SQ GS + D LRFD ++ + EL+ Sbjct: 618 AVDADLRQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELE 677 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA 692 IE +N I + T+++ DA +GA A+ G KY++ VRVV V GV S Sbjct: 678 EIECLINRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVP----GV-SME 732 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTHV +T EI I+SE I +GIRRIEA+ G+ ++ +D ++ L S LKV Sbjct: 733 LCGGTHVGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVK 792 Query: 753 QGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI------ISEV 804 +V RVE + EE R + + + K + + +K V I + + Sbjct: 793 AEDVTNRVENLLEELRAARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDT 852 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864 D+ LKS + L ++ + +++G S EK L+ V L + K +G Sbjct: 853 DADSLKSAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSP-----GVVSLGVQAGKFIG 907 Query: 865 ------GGGGGGRPHMAQSGG 879 GGGGGG+P+ AQ+GG Sbjct: 908 PIAKLCGGGGGGKPNFAQAGG 928 >gi|313471498|sp|B9FSH5|SYAP_ORYSJ RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|222635304|gb|EEE65436.1| hypothetical protein OsJ_20798 [Oryza sativa Japonica Group] Length = 932 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 336/918 (36%), Positives = 510/918 (55%), Gaps = 94/918 (10%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +IR FL+F+ GH++LPSSSL+P +DPT+ T +GM+ FK IF G+E TT Q Sbjct: 39 AIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCATTSQ 97 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI AW+L TKEF L RL Sbjct: 98 KCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKEAITWAWELTTKEFGLPPERL 153 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 +I+V+ +D+EAF +W G+ ++I R+ +DNFW+ TGPCGPCSEI++D P Sbjct: 154 WISVFQDDDEAFSIWHNEVGVPKERIKRLGEDDNFWTSGATGPCGPCSEIYYD---FYPE 210 Query: 186 GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 ++ G+ R+IE +NLVFMQ+ +++ L + +IDTGMGLERMA +LQ+ NN Sbjct: 211 RGSSDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGMGLERMARILQKVPNN 270 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL +I+ + + + Y + N ++I DH+R+ +LI+DG++P+N GRGYV Sbjct: 271 YETDLIFPIIEKAASMALVSYTTADDAMKTNLKIIGDHMRAVVYLISDGVIPSNIGRGYV 330 Query: 301 LRRIMRRAMCYARLLGYTE-----------PLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 +RR++RR + RL+G P + + +L TE+ P++ + I Sbjct: 331 VRRLIRRVVRTGRLIGIRGDGHGNSEGAFLPSLAEVAISLSTEID---PDVESRRKSILG 387 Query: 350 TLRSEDERFGKTLDRG-------LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 L+ E+ RF +TL+RG L + G L+G F LYDT+G P++I Sbjct: 388 ELQREELRFVQTLERGEKLLDELLDEALSSAGNNGGKPCLSGKDVFLLYDTYGFPVEITA 447 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 +I RG+ +D+ F+ +E QR +++A + + L G +I S+ + T+F+GY Sbjct: 448 EISGERGVI-VDMKGFDMEMENQRKQSQAAHNVVKLSVGNETEIVKSIPD----TEFLGY 502 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D L +++VK ++ G V G VE+ D+TPF Sbjct: 503 DSL-----------------------SATAVVKGLLVNGNSVNVVSEGSDVEIFLDRTPF 539 Query: 521 YAEAGGQLGDTGCAIGDGIR-------LQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 YAE+GGQ+GD G G ++I DVQK IFVH +++G + + Sbjct: 540 YAESGGQVGDNGFLYVYGEEDAKQKAVIEINDVQKSLGNIFVHKGTIKQGSVEVGKEIDA 599 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D + R+ +H+ATHLL AL +I+GS SQ GS + D LRFD +P++ EL Sbjct: 600 AVDAKLRQGAKAHHTATHLLQSALKSIIGSETSQAGSLVAFDRLRFDFNFHRPLSEEELM 659 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 IE VN ++ + T++M+ +DA +GA A+ G KY ++VRVV V GV S L Sbjct: 660 KIESLVNQWVSSATHLETKVMDLQDAKNAGAIAMFGEKYGEQVRVVEVP----GV-SMEL 714 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHVS+T EI I+SE I +G+RRIEA+ G ++ +D ++ L S LKV Sbjct: 715 CGGTHVSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCARDNYMRCLCSSLKVKA 774 Query: 754 GNVVGRVEEIWEEYR--KLQLIHAKRKLQ-LNVEDLS--CHKIADVNFMSHIISEVDSKE 808 +V GRVE I EE R + ++ + K+ L L+ I + + + +VD+ Sbjct: 775 EDVNGRVETILEELRTTRNEVSSLRSKIAVLKAASLANKATTIDNTRVVVENMGDVDADG 834 Query: 809 LKSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG-- 865 LKS + L ++ +++G S + K S++ + + V + + K +GG Sbjct: 835 LKSAAEYLVDTLEDPAAVILGSSPGDGKVSLVAAFSPGV------VKMGIQAGKFVGGIA 888 Query: 866 ----GGGGGRPHMAQSGG 879 GGGGG+P+ AQ+GG Sbjct: 889 KLCGGGGGGKPNFAQAGG 906 >gi|54025614|ref|YP_119856.1| alanyl-tRNA synthetase [Nocardia farcinica IFM 10152] gi|59798495|sp|Q5YTJ9|SYA_NOCFA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|54017122|dbj|BAD58492.1| putative alanyl-tRNA synthetase [Nocardia farcinica IFM 10152] Length = 888 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 334/930 (35%), Positives = 498/930 (53%), Gaps = 100/930 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F + GH +PS+SLI DP L+F N+GMV FK F GQE P Y T+VQK Sbjct: 6 IRRRFLDHFVRAGHTEVPSASLI-LADPNLLFVNAGMVQFKPYFLGQEAPPYPRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR G D++ VG T RH+TFF+M GNFSFG YFKE AI LAW+L++K F D Sbjct: 65 CVRTG----DIEEVGVTTRHNTFFQMAGNFSFGDYFKEGAITLAWELISKPQSEGGFGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R+++T Y +D EA ++W +++G+ ++I DN+W M GP GPCSEI+FD+G Sbjct: 121 PERIWVTAYQDDPEAAEIWHRMAGIPKERIQFRDGKDNYWDMGVPGPGGPCSEIYFDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQ------FEQQNKQERFILPKMSIDTGMGLERMAT 235 G G + +RY+EIWNLVFMQ +Q LPK +IDTGMG+ER+A Sbjct: 181 AY-GKDGGPVADEDRYLEIWNLVFMQDVRGELSPKQGHPPIGSLPKKNIDTGMGIERVAM 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 +LQ N Y+ DL + +I +E++TG +Y E + V RVI DH R+++ LI+DG+ P Sbjct: 240 LLQGVDNVYETDLLRPIIGKAEELTGRRYGAEHASDVRFRVIADHARTAAMLISDGVNPG 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N+GRGYVLRR++RR + ARLLG +P+M + + M +YPEL I Sbjct: 300 NDGRGYVLRRLLRRIVRSARLLGAEKPVMAEFMQVVSDLMSPSYPELATDFDRIRTVAVG 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+ F KTL G L D + + G +I D AF L+DT+G P+D+ ++ GL Sbjct: 360 EETAFLKTLTTGSTLFDNTAAAVKAKGGTKIAGAD-AFTLHDTYGFPIDLTLEMAAEAGL 418 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFM 469 + +D F + EQR RA+ + + I+ L ++ GAT+F G+D Sbjct: 419 S-VDEEGFRSLMAEQRRRAKEDAAARKHAHADLSIYKELVDR-GATEFTGFD-------- 468 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +LT+ + V A++ G V A GQ VEV+ D++P YAE+GGQ+ Sbjct: 469 -------------ELTS--EAHVLALIADGVRVPTATQGQDVEVILDRSPLYAESGGQIA 513 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHS 588 D G G++L++ DVQK A+ ++VH VE+G + TE +VL D RR + HS Sbjct: 514 DRGSITASGLKLRVNDVQKIAKKLWVHKTTVEQGQI-TEGDVVLAQADPAWRRGATQGHS 572 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 TH++H AL +LG + Q GS P LRFD ++ + IE ND + + P Sbjct: 573 GTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSEQQKADIEAVSNDAVGADFP 632 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + + A GA AL G Y D VRVV + GG S LCGGTHV + +I + Sbjct: 633 VNTFVTDLPKAKQMGALALFGENYGDEVRVVEI----GGPFSMELCGGTHVQHSSQIGPI 688 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++ ESS+ +G+RR+EA G + +L + L +AS LKV V RVE++ E Sbjct: 689 TLLGESSVGSGVRRVEAFVGLDSYKYLAKERALLAGVASSLKVPSEEVPARVEQLVE--- 745 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVD-----------------SKELK 810 +L++ ++L KIA V + + E + + +L+ Sbjct: 746 ---------RLKVAEKELERTKIAAVLSSAGKFVEEAERVGRVLLVAAAAPEGVAAGDLR 796 Query: 811 SVMDALQKKIQS--GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG---- 864 ++ ++ + S +++L+G + + K ++ V + +A ++ + +++G Sbjct: 797 TLATDIRGRFGSEPAVVVLLG-NADGKVPFVVAVNK------SAQEIGVKAGELVGSFGP 849 Query: 865 --GGGGGGRPHMAQSGGPNGNKADQAIAGV 892 G GGG+P MAQ G + + +A V Sbjct: 850 SIAGRGGGKPEMAQGAGSDPSGIPAGLAAV 879 >gi|269218535|ref|ZP_06162389.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211646|gb|EEZ77986.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 848 str. F0332] Length = 888 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 295/777 (37%), Positives = 439/777 (56%), Gaps = 50/777 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L++F K+ H + PS SL+ DP+++FT +GMVPF E + V + Sbjct: 3 TAEIRQRWLDYFAKHDHHIAPSVSLV-SPDPSILFTVAGMVPFIPYILNTEPAPWPTVAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKC+R ND+DNVGRT RH TFF+M GNFSFG YFKE AI LAW LLT + Sbjct: 62 VQKCIRT----NDIDNVGRTTRHGTFFQMNGNFSFGDYFKEGAIDLAWGLLTSSLAEGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RL++T+++ED ++ W ++ GL +D I ++ + WS + GP G C EI +D Sbjct: 118 GLDGDRLWMTIWEEDAVSYDYWTRVIGLPSDHIQKLPFKEISWSTGQPGPAGACCEIHYD 177 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232 +G E P G P + +G+R++EIWNLVF +F E + + L + +IDTG GLER Sbjct: 178 RGPEYGPDGGPAADVQGDRFLEIWNLVFDEFVRGEGEGHDFELVGKLERTAIDTGAGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 +A +LQ K N Y+ID +I+A+E++ G KY + + V RV+ DH+RSS LI DG+ Sbjct: 238 IAYLLQGKANMYEIDEVYPVIRATEEIAGKKYGADAEDDVRMRVVADHVRSSLMLIGDGV 297 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P N+GRGYVLRR++RRA+ RLLG + ++ L+ M +YPEL I + Sbjct: 298 RPGNDGRGYVLRRLIRRAVRSIRLLGVDDVVLPSLIATSKDAMKDSYPELEAEFSRILDV 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G + D S G +++L+G AF L+DT+G P+D+ ++ +G Sbjct: 358 ASAEEAAFRRTLASGTQIFDLAASKASGGNKVLSGKDAFALHDTYGFPIDLTLEMASEQG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFIGYDLLRGSK 467 L +D F + ++EQ+ RARA + +G + ++ L E G+T+F+GY Sbjct: 418 LK-VDEGEFRRLMQEQKDRARADARAKKTGHVDSAVYNEILDESGGSTRFLGYS------ 470 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 G + A++ G V A + +V+VV DQTPFYAE GGQ Sbjct: 471 -----------------ETGAEGKIVALLVDGVSVPAATAPAEVDVVLDQTPFYAEMGGQ 513 Query: 528 LGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 L D G ++ G +Q+ DVQ +G+ VH V G + + ID R Q++ + Sbjct: 514 LADRGTISVEGGGLVQVDDVQSPVKGLNVHRGTVSEGTIAVGEKVFAQIDVDRRGQIARS 573 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H++TH++H AL LG +Q GS +P LRFD H + I + + IE VND + +N Sbjct: 574 HTSTHMIHKALHEFLGEQATQAGSENSPSRLRFDFRHGEQIPADVVMGIEGRVNDRLREN 633 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 L V IM+ + A A+GA AL G KY VRVVS++ S LC GTHV STG+I Sbjct: 634 LEVTDEIMDLDKARAAGAMALFGEKYGKEVRVVSIDDS----WSKELCAGTHVPSTGKIG 689 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 L+ I+ ESSI +G+RRI+A+ G+ A ++ + + LA + + R++ + Sbjct: 690 LVSILGESSIGSGVRRIDALVGEGAYAYGAKEHALVSQLAGIVGARPEELPERIDAV 746 >gi|15609692|ref|NP_217071.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Rv] gi|15842093|ref|NP_337130.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551] gi|148662394|ref|YP_001283917.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|148823751|ref|YP_001288505.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis F11] gi|167968834|ref|ZP_02551111.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|215404504|ref|ZP_03416685.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987] gi|215427951|ref|ZP_03425870.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T92] gi|215431513|ref|ZP_03429432.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis EAS054] gi|253798364|ref|YP_003031365.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 1435] gi|289553655|ref|ZP_06442865.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 605] gi|289746347|ref|ZP_06505725.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987] gi|289751174|ref|ZP_06510552.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis T92] gi|289754673|ref|ZP_06514051.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis EAS054] gi|294994334|ref|ZP_06800025.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 210] gi|297635166|ref|ZP_06952946.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN 4207] gi|297732158|ref|ZP_06961276.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN R506] gi|306776829|ref|ZP_07415166.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu001] gi|306780594|ref|ZP_07418931.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu002] gi|306785357|ref|ZP_07423679.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu003] gi|306789957|ref|ZP_07428279.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu004] gi|306794037|ref|ZP_07432339.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu005] gi|306798436|ref|ZP_07436738.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu006] gi|306804315|ref|ZP_07440983.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu008] gi|306807646|ref|ZP_07444314.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu007] gi|306969847|ref|ZP_07482508.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu009] gi|306972944|ref|ZP_07485605.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu010] gi|307080655|ref|ZP_07489825.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu011] gi|307085242|ref|ZP_07494355.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu012] gi|313659492|ref|ZP_07816372.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis KZN V2475] gi|3122879|sp|O07438|SYA_MYCTU RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830157|sp|A5U5Q5|SYA_MYCTA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|3261815|emb|CAB09762.1| PROBABLE ALANYL-TRNA SYNTHETASE ALAS (ALANINE--TRNA LIGASE) (ALANINE TRANSLASE) (ALARS) [Mycobacterium tuberculosis H37Rv] gi|13882374|gb|AAK46944.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CDC1551] gi|148506546|gb|ABQ74355.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis H37Ra] gi|148722278|gb|ABR06903.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis F11] gi|253319867|gb|ACT24470.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 1435] gi|289438287|gb|EFD20780.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 605] gi|289686875|gb|EFD54363.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis 02_1987] gi|289691761|gb|EFD59190.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis T92] gi|289695260|gb|EFD62689.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis EAS054] gi|308214756|gb|EFO74155.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu001] gi|308326528|gb|EFP15379.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu002] gi|308329949|gb|EFP18800.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu003] gi|308333566|gb|EFP22417.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu004] gi|308337594|gb|EFP26445.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu005] gi|308341259|gb|EFP30110.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu006] gi|308345967|gb|EFP34818.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu007] gi|308349066|gb|EFP37917.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu008] gi|308352656|gb|EFP41507.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu009] gi|308357634|gb|EFP46485.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu010] gi|308361576|gb|EFP50427.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu011] gi|308365196|gb|EFP54047.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis SUMu012] gi|323718828|gb|EGB27984.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis CDC1551A] gi|328458134|gb|AEB03557.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis KZN 4207] Length = 904 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 345/920 (37%), Positives = 505/920 (54%), Gaps = 62/920 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT + LD Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 R++ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGP SEI++D+G Sbjct: 121 PERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234 E P G P SE+ RY+E+WNLVFMQ E+ K++ IL P+ +IDTGMG+ER+A Sbjct: 181 EFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGIL 291 VLQ+ N Y+ DL + +I +V Y+ GN + V +R+I DH R+++ LI DG+ Sbjct: 239 LVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVS 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + A+LLG ++ L+ + MG +YPEL+ I Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L + V S K +L+G AF L+DT+G P+++ ++ G Sbjct: 359 VAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D I F + + EQR RA+A + + + GAT+F G+D LR S+ Sbjct: 419 LQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQAR 476 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 V ++ P+ + +GV+ A GQ+VE+V D+TP YAE+GGQ+ Sbjct: 477 ILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESGGQIA 522 Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D G G G R +TDVQK A+ ++VH VE G +++ +D RR + Sbjct: 523 DEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQ 582 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG + Q GS P LRFD P+T + +E+ N+ + Sbjct: 583 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQA 642 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + A A GA AL G Y D VRVV E GG S LCGGTHVS+T +I Sbjct: 643 DFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQI 698 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+ ESSI +G+RR+EA G + HL + + LAS LKV V RV + E Sbjct: 699 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 758 Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819 R + + ++ +I +V ++ +S + + +L+S++ ++ K Sbjct: 759 RLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGK 818 Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + S ++ I++ + +V V +DL R N DL + A + G GGG+ + Sbjct: 819 LGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADL 875 Query: 875 AQSGGPNGNKADQAIAGVAS 894 AQ G N D A+ V S Sbjct: 876 AQGSGKNPTGIDAALDAVRS 895 >gi|31793738|ref|NP_856231.1| alanyl-tRNA synthetase [Mycobacterium bovis AF2122/97] gi|121638440|ref|YP_978664.1| alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990934|ref|YP_002645621.1| putative alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172] gi|260205877|ref|ZP_05773368.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis K85] gi|289575263|ref|ZP_06455490.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis K85] gi|41018172|sp|Q7TYB1|SYA_MYCBO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830151|sp|A1KLQ3|SYA_MYCBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|31619332|emb|CAD94770.1| PROBABLE ALANYL-TRNA SYNTHETASE ALAS (ALANINE--TRNA LIGASE) (ALANINE TRANSLASE) (ALARS) [Mycobacterium bovis AF2122/97] gi|121494088|emb|CAL72566.1| Probable alanyl-tRNA synthetase alaS [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774047|dbj|BAH26853.1| putative alanyl-tRNA synthetase [Mycobacterium bovis BCG str. Tokyo 172] gi|289539694|gb|EFD44272.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis K85] Length = 904 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 345/920 (37%), Positives = 505/920 (54%), Gaps = 62/920 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT + LD Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 R++ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGP SEI++D+G Sbjct: 121 PERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234 E P G P SE+ RY+E+WNLVFMQ E+ K++ IL P+ +IDTGMG+ER+A Sbjct: 181 EFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRNNIDTGMGVERIA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGIL 291 VLQ+ N Y+ DL + +I +V Y+ GN + V +R+I DH R+++ LI DG+ Sbjct: 239 LVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVS 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + A+LLG ++ L+ + MG +YPEL+ I Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L + V S K +L+G AF L+DT+G P+++ ++ G Sbjct: 359 VAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D I F + + EQR RA+A + + + GAT+F G+D LR S+ Sbjct: 419 LQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQAR 476 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 V ++ P+ + +GV+ A GQ+VE+V D+TP YAE+GGQ+ Sbjct: 477 ILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESGGQIA 522 Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D G G G R +TDVQK A+ ++VH VE G +++ +D RR + Sbjct: 523 DEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQ 582 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG + Q GS P LRFD P+T + +E+ N+ + Sbjct: 583 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQA 642 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + A A GA AL G Y D VRVV E GG S LCGGTHVS+T +I Sbjct: 643 DFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQI 698 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+ ESSI +G+RR+EA G + HL + + LAS LKV V RV + E Sbjct: 699 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 758 Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819 R + + ++ +I +V ++ +S + + +L+S++ ++ K Sbjct: 759 RLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGK 818 Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + S ++ I++ + +V V +DL R N DL + A + G GGG+ + Sbjct: 819 LGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADL 875 Query: 875 AQSGGPNGNKADQAIAGVAS 894 AQ G N D A+ V S Sbjct: 876 AQGSGKNPTGIDAALDAVRS 895 >gi|116327492|ref|YP_797212.1| alanine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122284708|sp|Q054G6|SYA_LEPBL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116120236|gb|ABJ78279.1| Alanine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 940 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 328/965 (33%), Positives = 483/965 (50%), Gaps = 121/965 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +VS IR FL +F+ H ++PSSSL+P DPTL+FT +GMV FK +FTG + Y T Sbjct: 5 SVSEIREIFLNYFKDKAHAVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R DL+ VG+T RH TFFEMLGNFSFG YFKE AI A D D+ Sbjct: 65 SCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIDYALDCSVNHLGFDK 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG- 180 ++++TVY +D+EA K+W G+ ++I+R+ DNFW A ++G CGPCSE++ D+G Sbjct: 121 EKIWVTVYTDDDEAEKIWI-TKGIPKERIMRLGKKDNFWGPAGDSGACGPCSELYLDRGV 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +C G + +R++E WN+VF QF Q + L + IDTG GLER+A Sbjct: 180 EKGGPDCATSGTCRPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVAL 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYE-------------------GNNIVNHRVIV 276 +LQ + YD + + +I E+++G+KY+ N RV+ Sbjct: 240 LLQGADSVYDTNELRKIISFYEELSGIKYDDVITLSKMPTQKNNTARIAANQKAAFRVVT 299 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336 DH+RS F I DGI P GRGYV+RR++RRA + R L + EP + L+ + Sbjct: 300 DHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLVDKVVEIYKPR 359 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDT 393 YPEL + I++T+ +E+E F KTL+ GL ++ +++ GK I +G AF LY T Sbjct: 360 YPELGKNSAAIQKTILAEEELFLKTLELGLEKIETLVAKTKTSGKT-IFSGADAFLLYGT 418 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G P ++ ++I+ +GL D F + LE+ R +R S K+ + Sbjct: 419 YGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQFSRE------SWKANKVSLMTGQSVE 471 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 T+F+GY L G + + G + E GQ + Sbjct: 472 KTEFLGYSSLSGK-------------------GNIIHLFNENKPAGALKE----GQAGAI 508 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 V ++TPFY E GGQ+GDTG ++ D QK+ + + +H V G L Sbjct: 509 VLNKTPFYPEGGGQVGDTGFLRQGKNVFKVLDTQKEND-VILHFGEVLSGEFSIAQELEA 567 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ++ R +L +HS THLL+ AL +LG HV Q GS ++P+ LRFD +H +TS E++ Sbjct: 568 EVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSKEIR 627 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 IE VN+ I +N PVVT+ + EDA GA A G KY DRVRVV + G S Sbjct: 628 KIESWVNESIRKNYPVVTKELPIEDAKKIGAVATFGEKYGDRVRVVQM-----GDASVEF 682 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR----------------------- 730 CGGTHVS TGEI +I ESS AG RRIE + G Sbjct: 683 CGGTHVSHTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRFAELTESVQNLNLKI 742 Query: 731 ------------ARSHLMGQDEKLKSL-------ASFLKVSQGNVVGRVEEIWEEYRKLQ 771 S++ G DE + L +F + + ++EE + K++ Sbjct: 743 KSELDNEGSKILVNSNVPGPDEIREKLEKEGATAVTFFRDLSEEIASQIEESTSAFLKMK 802 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 R + N + S +S I + D LK + D L+ + + +++ Sbjct: 803 KSLESRDFENNASVIEKVFASSMDTGVGKIVSAIFDDKDPNSLKGLSDNLKVR-EKNLLV 861 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 ++G ASV+I + L+ + + DL R ++L GG GGG+P MAQ GG Sbjct: 862 ILGSKNADNASVVITCSSQLVSKGIHCGDLVRTVCEML-GGKGGGKPDMAQGGGKEKQNL 920 Query: 886 DQAIA 890 + AI+ Sbjct: 921 ESAIS 925 >gi|30688660|ref|NP_680210.2| EMB1030 (EMBRYO DEFECTIVE 1030); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] gi|322510075|sp|Q9FFC7|SYAP_ARATH RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; AltName: Full=Protein EMBRYO DEFECTIVE 1030; AltName: Full=Protein EMBRYO DEFECTIVE 263; AltName: Full=Protein EMBRYO DEFECTIVE 86; Flags: Precursor gi|332005698|gb|AED93081.1| alanyl-tRNA synthetase [Arabidopsis thaliana] Length = 978 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 341/921 (37%), Positives = 509/921 (55%), Gaps = 97/921 (10%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 SIR FLEFF GH++LPSSSL+P DPT++ T +GM+ FK IF G+ TT Q Sbjct: 82 SIRRRFLEFFASRGHKVLPSSSLVP-EDPTVLLTIAGMLQFKPIFLGKVPREVPCATTAQ 140 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 +C+R NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L R+ Sbjct: 141 RCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEFGLPANRV 196 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++++Y++D+EAF++WK G+S ++I R+ DNFW+ TGPCGPCSE+++D P Sbjct: 197 WVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTSGPTGPCGPCSELYYD---FYPE 253 Query: 186 -GLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKM---SIDTGMGLERMATVLQE 239 G + G+ R+IE +NLVFMQ+ NK E +L + +IDTG+GLER+A +LQ+ Sbjct: 254 RGYDEDVDLGDDTRFIEFYNLVFMQY---NKTEDGLLEPLKQKNIDTGLGLERIAQILQK 310 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEG 296 NNY+ DL +I ++ + Y+ N + +VI DH+R+ +LI+DG+ P+N G Sbjct: 311 VPNNYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMRAVVYLISDGVSPSNIG 370 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL---------IQAKLLI 347 RGYV+RR++RRA+ + LG + +L A + EL ++A +I Sbjct: 371 RGYVVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIELSTYIDSDVKLKASRII 430 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL------GKD-EILNGDVAFKLYDTHGLPLDI 400 EE +R E+ F KTL+RG LLD L+ KD L+G AF LYDT G P++I Sbjct: 431 EE-IRQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGKDAFLLYDTFGFPVEI 489 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 ++ RG++ ID+ F +E QR +++ AH++ T + + + T+F+G Sbjct: 490 TAEVAEERGVS-IDMNGFEVEMENQRRQSQAAHNV---VKLTVEDDADMTKNIADTEFLG 545 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 YD L ++VK+++ G+ V G +VEV+ D+TP Sbjct: 546 YDSL-----------------------SARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTP 582 Query: 520 FYAEAGGQLGDTG--CAIGDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 FYAE+GGQ+ D G DG + ++++DVQK + IFVH V+ G L + Sbjct: 583 FYAESGGQIADHGFLYVSSDGNQEKAVVEVSDVQKSLK-IFVHKGTVKSGALEVGKEVEA 641 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D R++ ++H+ATHLL AL ++G SQ GS + D LRFD ++ + EL+ Sbjct: 642 AVDADLRQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELE 701 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSA 692 IE +N I + T+++ DA +GA A+ G KY++ VRVV V GV S Sbjct: 702 EIECLINRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVP----GV-SME 756 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGGTHV +T EI I+SE I +GIRRIEA+ G+ ++ +D ++ L S LKV Sbjct: 757 LCGGTHVGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVK 816 Query: 753 QGNVVGRVEEIWEEYR--KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI------ISEV 804 +V RVE + EE R + + + K + + +K V I + + Sbjct: 817 AEDVTNRVENLLEELRAARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDT 876 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864 D+ LKS + L ++ + +++G S EK L+ V L + K +G Sbjct: 877 DADSLKSAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSP-----GVVSLGVQAGKFIG 931 Query: 865 ------GGGGGGRPHMAQSGG 879 GGGGGG+P+ AQ+GG Sbjct: 932 PIAKLCGGGGGGKPNFAQAGG 952 >gi|205830240|sp|A5GWM4|SYA_SYNR3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS Length = 882 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 347/915 (37%), Positives = 520/915 (56%), Gaps = 69/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63 + IR FLEF++ GH+ +PS+SLIP DPT++ T +GM+PFK +F GQ E+P +A T+ Sbjct: 12 AEIRAAFLEFYESRGHQPIPSASLIPV-DPTVLLTIAGMLPFKPVFLGQQERPAPRA-TS 69 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD + Sbjct: 70 SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPK 125 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + Sbjct: 126 NLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPAL 185 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G E+ R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ NN Sbjct: 186 -GDEDIDLEDDSRFIEFYNLVFMQYSRDAEGTLTPLANKNIDTGLGLERMAQILQGVPNN 244 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL LI+ + + G+ Y ++ + +VI DH R+ + LI DG+ +N GRGY+ Sbjct: 245 YETDLIYPLIETAAGLAGVDYRQLDVKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYI 304 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RR + + RLLG ++P ++ + A M +AYP+L + + LI L+ E+ RF + Sbjct: 305 LRRLLRRVVRHGRLLGISKPFLVAMGEAAIALMQAAYPQLNERRELILAELQREEARFLE 364 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG LL VL+ K + ++G+ AF+LYDT+G PL++ ++I GL+ +D+ F Sbjct: 365 TLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTEEIAEEHGLS-VDLAGFEA 421 Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 A+E QR RA+A ++ + G E++ L+ AT F GY+ L Sbjct: 422 AMEAQRQRAKAAAVSIDLTLQGAIEQMAADLE----ATAFRGYEAL-------------- 463 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + P S V A+V GE + A +G V++V D TPFY E GGQ+GD G G Sbjct: 464 EHP---------SCVVALVVNGEPAQTASAGDAVQLVLDSTPFYGEGGGQVGDRGSLNGQ 514 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + I V ++ + + VHH +ERG L + +D RR+ +H+ATHLL AL Sbjct: 515 DLIVSIESVNRQRD-VSVHHGTIERGQLSVGDLVTAQVDPTCRRRAQAHHTATHLLQAAL 573 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++ S +SQ GS + D LRFD + +T AEL+ +E +N I + + + M E Sbjct: 574 KQVVDSSISQAGSLVDFDRLRFDFHCPRAVTPAELEQLEALINGWITEAHSLEVQEMAIE 633 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IVSE+ + Sbjct: 634 AAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVSEAGVA 688 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +GIRRIEA+ G ++L +D +K L+ KV + RV + EE + A Sbjct: 689 SGIRRIEAVAGPAVLAYLNERDVVVKQLSERFKVQPAEITARVAGLQEELKGATKALAAA 748 Query: 778 KLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG-IIMLVGIS 831 + +L I + + + VD L+S L ++ G ++L G+ Sbjct: 749 RSELAVAKAAALAAQAEAIGEHQLLVARLDGVDGGGLQSAAQGLADQLGDGAAVVLGGLP 808 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLAR--LSAKVLGG------GGGGGRPHMAQSGGPNGN 883 +I+V F +A+ + + +GG GGGGGRP++AQ+GG +G Sbjct: 809 DPSDLGKVILVAA-----FGKAVVAKGQKAGQFIGGVAKLCGGGGGGRPNLAQAGGRDGA 863 Query: 884 KADQAIAGVASFLKK 898 D A+ S L++ Sbjct: 864 ALDGALEQAKSSLQQ 878 >gi|19746355|ref|NP_607491.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS8232] gi|24418690|sp|Q8P0E6|SYA_STRP8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|19748550|gb|AAL97990.1| putative alanyl-tRNA synthetase [Streptococcus pyogenes MGAS8232] Length = 872 Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust. Identities = 330/918 (35%), Positives = 497/918 (54%), Gaps = 74/918 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF+ AI ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRNEAIGWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGE-----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGIRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ F I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALLFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKERGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R Q +A+ K + + V F++ + D+ L++ D Sbjct: 737 QALSDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVA 893 +GG + +K + +A VA Sbjct: 852 MAGGSDASKIAELLAAVA 869 >gi|163840721|ref|YP_001625126.1| alanyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209] gi|205830238|sp|A9WSC4|SYA_RENSM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|162954197|gb|ABY23712.1| alanyl-tRNA synthetase [Renibacterium salmoninarum ATCC 33209] Length = 896 Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust. Identities = 334/927 (36%), Positives = 490/927 (52%), Gaps = 84/927 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I +L+FF GH ++PS+SLI DP+++F +GMVPF +G+EK Y T+VQK Sbjct: 6 IAQRWLDFFAAKGHTVVPSASLISA-DPSILFNIAGMVPFVPYLSGREKAPYDRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG+T RH TFF+M GNFSFG YFKE AI AW+LLT + LD Sbjct: 65 CIRTA----DIDEVGKTVRHGTFFQMCGNFSFGDYFKEGAITFAWELLTSSIADGGYGLD 120 Query: 122 QRRLYITVY----DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 RL+ TVY ++DEEA +W+ G+ ++I DNFWS + GP GPCSEI++ Sbjct: 121 PSRLWATVYVDGTEKDEEARAIWRDKIGIPEERIQGTGKADNFWSTGQPGPGGPCSEIYY 180 Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFI---LPKMSIDTGMGLE 231 D G G G + RYIEIWNLVFMQ++ ++K + I LP +IDTG+GLE Sbjct: 181 DLGAKY-GQEGGPIVDETRYIEIWNLVFMQYQLSAVRSKTDFDIAGDLPNRNIDTGLGLE 239 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVNHRVIVDHLRSS 282 R+A +LQ N Y+ D + ++ A+ ++ G Y + V RV+ DH+RS+ Sbjct: 240 RLAMILQGVENLYETDQVRPVLDAAAELAGKDYTSTVDPADPHHADDVRLRVVADHIRSA 299 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 LIADG+ P+NEGRGYVLRR++RRA+ RL+G +P + LLP M YP + + Sbjct: 300 LMLIADGVAPSNEGRGYVLRRLIRRAVRAMRLMGVEKPCLPALLPVSREAMKGFYPAVEE 359 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 I +E++ F +T+ G LD V K++ L+G AF L+DT+G P+D+ Sbjct: 360 DFERISRIAYAEEKSFLRTIASGTARLDEAVTESKAKNQPLSGAEAFALHDTYGFPIDLT 419 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 ++ GLA +D F + EQR RA+A S SG + F+ G T F GY Sbjct: 420 LEMAAEAGLA-VDETGFRALMLEQRQRAQADSREKKSGHADLSAFNELLAQGQTVFTGYS 478 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L G S ++ ++ G+ + +A GQ++E+V +TPFY Sbjct: 479 ELDGE-----------------------SAIRGLLSGGQPIAKASQGQEIELVLAETPFY 515 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 AEAGGQ DTG GDG +++ DVQ+ + + VH AIV G + S+ +D + R Sbjct: 516 AEAGGQAADTGLISGDGFVIEVLDVQRPVKDLSVHKAIVREGEVAIGASVRAAVDRERRH 575 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 H+ TH++H AL ILG Q GS LRFD + +++A IE+ N Sbjct: 576 AAEQAHTGTHIVHAALHQILGPEALQRGSFNKAGYLRFDFAWGEGLSTATRSEIEEVANI 635 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I N V T M ++A A GA AL G Y RVRVV ++ G S LCGGTHV + Sbjct: 636 AIRNNYSVQTTEMPIDEAKALGAMALFGENYGSRVRVVEID----GAWSRELCGGTHVDT 691 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV- 760 T I L ++ E S+ G RR+EA G A HL + + L +KV + R+ Sbjct: 692 TSRIGSLTLLGEQSVGYGNRRVEAFVGMDAFRHLAAERALVSELTEIMKVPSTQLADRIG 751 Query: 761 ---------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKELK 810 E+ + RK QL A +L ++ ++H + ++ + EL+ Sbjct: 752 ATLAKLRATEKELDRLRKAQLTAAAGELTTK-----AQQVGKTRLLTHDVGQIGGADELR 806 Query: 811 SVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD---LARLSAKVLGG 865 S+ L++++ ++ ++ L G S ++ +++V + R V L +L+A VL G Sbjct: 807 SLALDLRERLGSEAAVVALTGESNDRP---MVLVATNEAARAAGVKAGALVKLAAGVL-G 862 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGV 892 GGGGG+ +AQ GG N + A+A + Sbjct: 863 GGGGGKDDVAQGGGSNVGQIPAALAAI 889 >gi|145295754|ref|YP_001138575.1| alanyl-tRNA synthetase [Corynebacterium glutamicum R] gi|205830038|sp|A4QEK7|SYA_CORGB RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|140845674|dbj|BAF54673.1| hypothetical protein [Corynebacterium glutamicum R] Length = 888 Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust. Identities = 330/902 (36%), Positives = 497/902 (55%), Gaps = 64/902 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F F GH+ +PS+SLI +DP L+F N+GMVPFK F GQ+ P ++ T++ Sbjct: 6 IRERFTNHFVNAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFENGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT F Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWGLLTGSVADGGFG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA ++W+K G+ A++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPERLWVTVYLDDDEAAEIWEKKIGVPAERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERM 233 GE G G + RY+EIWNLVFM+ E Q ++ F LPK +IDTGMG+ER+ Sbjct: 181 GEKY-GKEGGPVADDNRYMEIWNLVFMEKERGQGIGKDNFEILGDLPKKNIDTGMGVERV 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ+ N Y+ DL + +I +E +TG KY +N + RVI DH R+ LI DG+ Sbjct: 240 ACILQDVENVYETDLLRPVIDVAETLTGTKYGSDNTSDIRFRVIADHSRTGMMLILDGVT 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + I Sbjct: 300 PGNEGRGYILRRLLRRIIRSARLLGATGETMEQFMNTIMDTMTPSYPEIADNRERIMRVA 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G L + + + + G AF L+DT+G P+D+ ++ G Sbjct: 360 VTEERAFLKTLVSGTHLFEEAATSIKAAGSTKVAGAQAFALHDTYGFPIDLTLEMAAEAG 419 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F+ + EQRSRA+A S G T+ + T F G++ L Sbjct: 420 LE-VDVEGFDSLMAEQRSRAKADSQAKKHGHTDLSIYREWVDNNPTVFTGFEELDSQ--- 475 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S V ++ G + EA GQ+VEV+ DQ+P YAE+GGQLG Sbjct: 476 --------------------SKVLGLLSDGAKISEATEGQEVEVILDQSPLYAESGGQLG 515 Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +GD + L + DVQK + ++VH A+V G L +V ++D Q R H+ Sbjct: 516 DRGQILLGDTV-LDVHDVQKIGKKLWVHKALVANGGLAVGDEVVASVDKQWRHAARQAHT 574 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LG Q GS P LRFD +++ +T A+++ I+ N+ + + Sbjct: 575 ATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPAQVEQIQAITNEAVDTDWA 634 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + E+A A GA AL G Y VRVV + GG S LCGGTHV+ + +I + Sbjct: 635 VNTVETSLEEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVAHSSQIGPV 690 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767 ++ ESSI +G+RRIEA +G + ++L + + LAS LK + RV ++ ++ Sbjct: 691 ALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAEGLASSLKAPSEELPERVAQLVDKLK 750 Query: 768 ---RKLQLIHAKRKLQLNVEDL--SCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI- 820 ++++ +H +++L DL + +I V + + ++ +L+++ L+ K+ Sbjct: 751 AAEKEIEALH-RQQLMAQTADLLNNAQEIGGVTTLLLRVKDNTNAGDLRTIATTLKDKLG 809 Query: 821 -QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + G++++ + K V+ + ++ +L +L + G GGG+ +AQ G Sbjct: 810 DREGVLVIASDNAGKVPFVVAATKAAVARGAHSGNLVKLVGSYI-DGRGGGKADLAQGSG 868 Query: 880 PN 881 N Sbjct: 869 AN 870 >gi|116331894|ref|YP_801612.1| alanine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122280371|sp|Q04QG6|SYA_LEPBJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116125583|gb|ABJ76854.1| Alanine--tRNA ligase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 940 Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust. Identities = 328/965 (33%), Positives = 482/965 (49%), Gaps = 121/965 (12%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 +VS IR FL +F+ H ++PSSSL+P DPTL+FT +GMV FK +FTG + Y T Sbjct: 5 SVSEIREIFLNYFKDKAHAVVPSSSLLPAGDPTLLFTTAGMVQFKPLFTGAVELPYTRAT 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 + QKC+R DL+ VG+T RH TFFEMLGNFSFG YFKE AI A D D+ Sbjct: 65 SCQKCLRT----TDLEVVGKTERHCTFFEMLGNFSFGDYFKEEAIDYALDCSVNHLGFDK 120 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQG- 180 ++++TVY +D+EA K+W G+ ++I R+ DNFW A ++G CGPCSE++ D+G Sbjct: 121 EKIWVTVYTDDDEAEKIWI-TKGIPKERITRLGKKDNFWGPAGDSGACGPCSELYLDRGV 179 Query: 181 -----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +C G + +R++E WN+VF QF Q + L + IDTG GLER+A Sbjct: 180 EKGGPDCATSGTCRPGCDCDRFLEFWNIVFNQFNQDTEGNLHPLKQTGIDTGSGLERVAL 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYE-------------------GNNIVNHRVIV 276 +LQ + YD + + +I E+++G+KY+ N RV+ Sbjct: 240 LLQGADSVYDTNELRKIISFYEELSGIKYDDVITLSKMPTQKNNTARIAANQKAAFRVVT 299 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA 336 DH+RS F I DGI P GRGYV+RR++RRA + R L + EP + L+ + Sbjct: 300 DHIRSVLFSIGDGIYPDRTGRGYVIRRLIRRATLFGRKLNFKEPFLYKLVDKVVEIYKPR 359 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDT 393 YPEL + I++T+ +E+E F KTL+ GL ++ +++ GK I +G AF LY T Sbjct: 360 YPELGKNSAAIQKTILAEEELFLKTLELGLEKIETLVAKTKTSGKT-IFSGADAFLLYGT 418 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G P ++ ++I+ +GL D F + LE+ R +R S K+ + Sbjct: 419 YGFPAEMTEEIVAEQGL-DFDKKGFQEELEKDRQLSRE------SWKANKVSLMTGQSVE 471 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 T+F+GY L G + + G + E GQ + Sbjct: 472 KTEFLGYSSLSGK-------------------GNIIHLFNENKPAGALKE----GQAGAI 508 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 V ++TPFY E GGQ+GDTG ++ D QK+ + + +H V G L Sbjct: 509 VLNKTPFYPEGGGQVGDTGFLRQGKNVFKVLDTQKEND-VILHFGEVLSGEFSIAQELEA 567 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ++ R +L +HS THLL+ AL +LG HV Q GS ++P+ LRFD +H +TS E++ Sbjct: 568 EVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSKEIR 627 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 IE VN+ I +N PVVT+ + EDA GA A G KY DRVRVV + G S Sbjct: 628 KIESWVNESIRKNYPVVTKELPIEDAKKIGAVATFGEKYGDRVRVVQM-----GDASVEF 682 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR----------------------- 730 CGGTHVS TGEI +I ESS AG RRIE + G Sbjct: 683 CGGTHVSHTGEIGYFFIKKESSPGAGNRRIEGVCGPAVIETFQNRFAELTESVQNLNLKI 742 Query: 731 ------------ARSHLMGQDEKLKSL-------ASFLKVSQGNVVGRVEEIWEEYRKLQ 771 S++ G DE + L +F + + ++EE + K++ Sbjct: 743 KSELDNEGSKILVNSNVPGPDEIREKLEKEGATAVTFFRDLSEEIASQIEESTSAFLKMK 802 Query: 772 LIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIM 826 R + N + S +S I + D LK + D L+ + + +++ Sbjct: 803 KSLESRDFENNASVIEKVFASSMDTGVGKIVSAIFDDKDPNSLKGLSDNLKVR-EKNLLV 861 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 ++G ASV+I + L+ + + DL R ++L GG GGG+P MAQ GG Sbjct: 862 ILGSKNADNASVVITCSSQLVSKGIHCGDLVRTVCEML-GGKGGGKPDMAQGGGKEKQNL 920 Query: 886 DQAIA 890 + AI+ Sbjct: 921 ESAIS 925 >gi|271967372|ref|YP_003341568.1| alanine--tRNA ligase [Streptosporangium roseum DSM 43021] gi|270510547|gb|ACZ88825.1| Alanine--tRNA ligase [Streptosporangium roseum DSM 43021] Length = 890 Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust. Identities = 315/786 (40%), Positives = 446/786 (56%), Gaps = 56/786 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I FL FF++ GH ++PS+SLI DPTL+ +GMVPFK F GQ+KP + T+V Sbjct: 4 AEIARRFLRFFEERGHTVVPSASLI-AEDPTLLLVPAGMVPFKPYFLGQQKPPFNRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE+AI LAW+LLTK F Sbjct: 63 QKCVRT----PDIDEVGKTTRHATFFQMLGNFSFGDYFKEQAIPLAWELLTKPESEGGFG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 Q RL++TVY +D+EA+ +W G+ +++I R DN+W M GP GPCSEI++D+ Sbjct: 119 FPQERLWVTVYQDDDEAYGIWHDKVGVPSERIQRRGLEDNYWHMGVPGPGGPCSEIYYDR 178 Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLER 232 G E G P + E RY+E+WN VFMQF+ + + LP S+DTGMGLER Sbjct: 179 GPEYGRDGGPVADEN--RYLEVWNNVFMQFQLSAVRSKVDFDVAGELPARSVDTGMGLER 236 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 MA +LQ N Y+ID ++ + ++T +Y + V+ RVI DH+R+ L+ADG+ Sbjct: 237 MAAILQGVDNIYEIDTTYKILDRAAELTKTRYGRDERADVSLRVIADHVRTGVMLVADGV 296 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQAKLLIEE 349 LP+NEGRGYVLRRI+RRA+ RLLG E MH L A+ + MG YPEL I Sbjct: 297 LPSNEGRGYVLRRILRRAIRNLRLLGAGEERYMHELTAVTIDVMGEQYPELKADAPQIHG 356 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+ F TL G + D + GK L G+ AF+L+DT+G P+D+ ++ Sbjct: 357 VIDAEEASFLGTLRTGTAIFDVAVEETRRKGKG-TLAGEQAFQLHDTYGFPIDLTLEMAS 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL +D F + ++EQR RA+A + +G + ++ + EK G +F+GYD Sbjct: 416 EQGLK-VDEEGFRRLMKEQRDRAKADAAAKKTGNADISVFGQILEKTGRVEFLGYD---- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 +V + I L G G V A +G +VEVV +TPFYAE G Sbjct: 471 --------QVTAEAEVIGLLVG-----------GAPVPAAGAGTEVEVVLGRTPFYAEGG 511 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQL D G DG ++I DVQ G+ VH V G +R ID + RR +S Sbjct: 512 GQLADQGVIRTDGAEVEIVDVQSPVSGVVVHRGKVRAGEIRVGDQAQAEIDVERRRAISR 571 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATHL+H LG +Q GS +P RFD T + + + L+ +ED VN ++ Sbjct: 572 SHTATHLVHRGFRNALGETAAQAGSENSPGRFRFDFTAAGAVAPSMLRDVEDEVNAVLIN 631 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +L V ++ +A A GA AL G KY + VR+V V G +S LCGGTHVSS+G++ Sbjct: 632 DLTVNAFHTSQAEARAMGALALFGEKYGETVRIVEV-----GDYSRELCGGTHVSSSGQL 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ ++ E+SI AG+RR+EA+ G A L + + L+ LK + + R++ I Sbjct: 687 GLVKVLGEASIGAGVRRVEALVGLDAFRFLARESVLVAQLSEQLKARREELPERIDGIVT 746 Query: 766 EYRKLQ 771 R + Sbjct: 747 RLRAAE 752 >gi|269126369|ref|YP_003299739.1| alanyl-tRNA synthetase [Thermomonospora curvata DSM 43183] gi|268311327|gb|ACY97701.1| alanyl-tRNA synthetase [Thermomonospora curvata DSM 43183] Length = 889 Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust. Identities = 324/871 (37%), Positives = 484/871 (55%), Gaps = 73/871 (8%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 FL FF++ GH ++PS+SL+ DPTL+ +GMVPFK F GQ P +T+ QKCVR Sbjct: 10 FLAFFEERGHTVVPSASLV-AEDPTLLLVPAGMVPFKPYFLGQRTPPAPRMTSAQKCVRT 68 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRL 125 D+D VG+T RH TFF+MLGNFS G YFKE AI AW+LLT+ F + +L Sbjct: 69 ----PDIDEVGKTTRHATFFQMLGNFSIGDYFKEGAIPYAWELLTRPVSDGGFGFPEDKL 124 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++TVY +D+EA +W + G+ ++I R DN+W M GP GPCSEI++D+G G Sbjct: 125 WVTVYLDDDEAADIWHRKVGIPVERIQRRGLADNYWHMGVPGPGGPCSEIYYDRGPAY-G 183 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMATVLQE 239 G + +RY+E+WNLVFMQ + + + LP +IDTGMGLERMA +LQ Sbjct: 184 REGGPIADEDRYLEVWNLVFMQEQLSAVRSKTDFDVAGPLPAKNIDTGMGLERMAAILQG 243 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N Y+ D + ++ + ++TG +Y + V+ RV+ DH+R+ + L+ADG++PANEGR Sbjct: 244 VDNIYETDTLRRILDKAAELTGTRYGRDRRADVSLRVVADHVRAGTMLVADGVIPANEGR 303 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALC-TEMGSAYPELIQAKLLIEETLRSEDE 356 GYVLRR++RRA+ RLLG + +MH L A+ MG Y ELI I + +E+E Sbjct: 304 GYVLRRLLRRAIRNLRLLGGQDAGLMHELTAVAIAAMGEQYTELISTAANIHAVIDAEEE 363 Query: 357 RFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 RF +TL G + D ++ + ++L+G AF L+DT+G P+D+ ++ +GL+ +D Sbjct: 364 RFLQTLRTGTAIFDAAVAETKRAGKQVLSGSQAFTLHDTYGFPIDLTLEMAAEQGLS-VD 422 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFS--LKEKYGATQFIGYDLLRGSKFMKED 472 F + LEEQR RA+A + +G + L G F+GY + G E Sbjct: 423 EEGFRRLLEEQRQRAKADAAAKKTGNLDVSVLGELLDRAGGKVDFLGYHDVTG-----EA 477 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 R V L NG S V A +G +VEVV D+TPFYAE GGQL D G Sbjct: 478 RVVGL------LVNGAS------------VPAAGAGTEVEVVLDRTPFYAEGGGQLADQG 519 Query: 533 -CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G +++ DVQ G+ VH V G + + ID + RR +S +H+ATH Sbjct: 520 RIRTGGGAEIEVHDVQSPLPGLIVHRGKVRAGEAQAGDTAFAEIDVERRRAISRSHTATH 579 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 ++H LG +Q GS +P RFD T + P+ + L+ +ED VN ++ +L V Sbjct: 580 MVHAGFRRALGESAAQAGSENSPGRFRFDFTSAGPVPPSVLRDVEDEVNAVLVDDLDVRA 639 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E A A GA AL G KY D VRVV V G +S LCGGTHV+ +G++ L+ ++ Sbjct: 640 FTTSIEQARAMGALALFGEKYGDEVRVVEV-----GDYSRELCGGTHVARSGQLGLIKVL 694 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-------GNVVGRVEEIW 764 ESSI AG+RRIEA+ G A L + + L+ LKV + V+GR+ E Sbjct: 695 GESSIGAGVRRIEALVGIDAFRFLARESVLVSQLSEQLKVRKEELPERISTVIGRLREAE 754 Query: 765 EEYRKL---QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQKKI 820 +E +L Q++ L + +D I + +++H + + +L+ + ++ ++ Sbjct: 755 KELERLRSAQVLAVAGSLADSAKD-----IDGIAYVAHRAPDGTTADDLRKLALDVRGRL 809 Query: 821 QS--GIIMLVGISKEKKASVLIVVTEDLLDR 849 S ++++ G+ K++ V++ VTE +R Sbjct: 810 ASRPAVVLITGVPKDRPV-VVVAVTEGARER 839 >gi|68536115|ref|YP_250820.1| alanyl-tRNA synthetase [Corynebacterium jeikeium K411] gi|83305843|sp|Q4JVF5|SYA_CORJK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|68263714|emb|CAI37202.1| alaS [Corynebacterium jeikeium K411] Length = 887 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 332/923 (35%), Positives = 489/923 (52%), Gaps = 74/923 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F+E F K GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P ++ T++ Sbjct: 6 IRQRFIEHFTKAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFENGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D+D VG T RH+TFF+M GNFSFG YFKE AI AW LLT + Sbjct: 65 QKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGAYFKEGAITHAWTLLTNPVEEGGLG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TV+ +D+EA ++W K G+ KI R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPERLWVTVFTDDDEAAEIWNKKIGVPEHKIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEG------ERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTG 227 G P +EG RYIEIWNLVFM+ E + N + LPK +IDTG Sbjct: 181 G-------PEHGQEGGPIVDDTRYIEIWNLVFMENERGEGLGKGNFEIVGKLPKKNIDTG 233 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFL 285 +G+ER+A +LQ+ N Y+ DL + +I +++VTG KY + N V RVI DH R+ L Sbjct: 234 LGIERVACILQDVDNVYETDLLRPVIDVAQEVTGAKYGADQANDVRFRVIADHSRTGLML 293 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 + DG+ P NEGRGY+LRR++RR + ARLLG T + + + M +YPE+ + Sbjct: 294 MLDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETLEKFMDTVRETMTPSYPEIAENYE 353 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQ 402 I +E++ F KTL+ G + D +H K+ + + GDVAF L+DTHG P+D+ Q Sbjct: 354 RIRAVALAEEKSFLKTLESGSQMFDN-WAHEAKERGEDTVPGDVAFSLHDTHGFPIDLTQ 412 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 ++ L +DI F++ + EQ++RA+A + G ++ + T F GY+ Sbjct: 413 EMAAEADLK-VDIDGFHELMAEQKARAKADNNAKKLGHVDQTIYRPFVDNHPTVFTGYEN 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L ++ VL I++ G +VE A G +V+ D+TPFYA Sbjct: 472 L------ADEASVL-----------------GIIRDGALVETAPEGAAAQVILDRTPFYA 508 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 EAGGQ+ D G ++ DVQK + ++VHH V G L + T+D R Q Sbjct: 509 EAGGQMADRGEMTSTSGAARVEDVQKVGKKVWVHHVTVSGGELAVGQKVQATVDKAWRHQ 568 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 HS THL+H AL +LG Q GS P LRFD + + +T +L IE+ N Sbjct: 569 ARQAHSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYGEQLTEHQLNQIEEIANGA 628 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + + V T + E+A A GA AL G Y VRVV + GG S LCGG HV + Sbjct: 629 VDSDYQVNTIETSLEEAKAMGAMALFGENYGSEVRVVEI----GGPFSMELCGGIHVEHS 684 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 ++ + ++ ESS+ +G+RRIEA TG + L + + LA+ LK + R++ Sbjct: 685 SQVGPISVLGESSVGSGVRRIEAYTGMDSFRFLSTEKSLVSGLATSLKTPSEELPDRIDA 744 Query: 763 IWEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSV-MDA 815 + + + QL + + Q+ I +V ++ + E V + +L+++ MDA Sbjct: 745 LTAKLKAAEKQIQQLRAQQLQGQVGQLVEKAETIGEVKVLAEQLPEGVAAGDLRTLAMDA 804 Query: 816 LQK-KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + + +++ + EK V + A +L + + + G GGG+P M Sbjct: 805 KNRLGSEPAVVVFASVDGEKVPFVAAANDAAVDKGIKAGELVKTFGEKV-AGRGGGKPAM 863 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 AQ G + I V S L+ Sbjct: 864 AQGSGSDAAGISAGIEAVKSALR 886 >gi|139473577|ref|YP_001128293.1| alanyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo] gi|205830227|sp|A2RDY3|SYA_STRPG RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|134271824|emb|CAM30058.1| alanyl-tRNA synthetase [Streptococcus pyogenes str. Manfredo] Length = 872 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 330/918 (35%), Positives = 500/918 (54%), Gaps = 74/918 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G Sbjct: 1 MKELSSAQIRQMWLDFWKSKGHCVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVITEN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD + +LY+T Y +D++++ W G+ ++ I DNFW + GP GP +EIF Sbjct: 117 WFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+GE GL +E E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA+ + R LG E + L+ + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVLTVGQIMESYYPEVLEKRDF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLYDT+G P+++ ++ Sbjct: 352 IEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLYDTYGFPVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + G ID F A++EQ+ RARA + GS G ++ Sbjct: 411 LAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS-------------MGMQNETLAGIV 456 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 S+F + T + S + I+ E E GQ + +VF QTPFYAE Sbjct: 457 EESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL-LVFAQTPFYAE 502 Query: 524 AGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GGQ+ DTG D ++ DVQK G +H V L + L I+ + R Sbjct: 503 MGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGTNYTLEINKERRL 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ EL+ IE VN+ Sbjct: 562 AVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNE 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I L + T + E A GA AL G KY VRVV + G +S LCGGTH+++ Sbjct: 622 QIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNYSVELCGGTHLNN 676 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRV 760 + EI L IV E I +G RRI A+TG++A Q++ LK +A+ +K Q + +V Sbjct: 677 SSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKV 736 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDA 815 + + + R Q +A+ K + + V ++ + D+ L++ D Sbjct: 737 QALSDSLRDFQKENAELKEKAAAAAAGDVFKDVQEAKGVRIIASQVDVADAGALRTFADN 796 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 ++K S +++LV EK ++ T+D+ +A ++ + A ++ G GGG+P MA Sbjct: 797 WKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV-AGRGGGKPDMA 851 Query: 876 QSGGPNGNKADQAIAGVA 893 +GG + +K + +A VA Sbjct: 852 MAGGSDASKIAELLAAVA 869 >gi|148243479|ref|YP_001228636.1| alanyl-tRNA synthetase [Synechococcus sp. RCC307] gi|147851789|emb|CAK29283.1| Alanyl-tRNA synthetase [Synechococcus sp. RCC307] Length = 915 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 347/915 (37%), Positives = 520/915 (56%), Gaps = 69/915 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTT 63 + IR FLEF++ GH+ +PS+SLIP DPT++ T +GM+PFK +F GQ E+P +A T+ Sbjct: 45 AEIRAAFLEFYESRGHQPIPSASLIPV-DPTVLLTIAGMLPFKPVFLGQQERPAPRA-TS 102 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ F LD + Sbjct: 103 SQKCIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTEVFGLDPK 158 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 L ++V+ ED+EA +W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + Sbjct: 159 NLVVSVFREDDEAEAIWRDVVGVNPKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPAL 218 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G E+ R+IE +NLVFMQ+ + + L +IDTG+GLERMA +LQ NN Sbjct: 219 -GDEDIDLEDDSRFIEFYNLVFMQYSRDAEGTLTPLANKNIDTGLGLERMAQILQGVPNN 277 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL LI+ + + G+ Y ++ + +VI DH R+ + LI DG+ +N GRGY+ Sbjct: 278 YETDLIYPLIETAAGLAGVDYRQLDVKGQTSLKVIGDHSRAVTQLICDGVTASNLGRGYI 337 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RR + + RLLG ++P ++ + A M +AYP+L + + LI L+ E+ RF + Sbjct: 338 LRRLLRRVVRHGRLLGISKPFLVAMGEAAIALMQAAYPQLNERRELILAELQREEARFLE 397 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL+RG LL VL+ K + ++G+ AF+LYDT+G PL++ ++I GL+ +D+ F Sbjct: 398 TLERGEKLLADVLA--AKPKQISGEQAFELYDTYGFPLELTEEIAEEHGLS-VDLAGFEA 454 Query: 421 ALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 A+E QR RA+A ++ + G E++ L+ AT F GY+ L Sbjct: 455 AMEAQRQRAKAAAVSIDLTLQGAIEQMAADLE----ATAFRGYEAL-------------- 496 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 + P S V A+V GE + A +G V++V D TPFY E GGQ+GD G G Sbjct: 497 EHP---------SCVVALVVNGEPAQTASAGDAVQLVLDSTPFYGEGGGQVGDRGSLNGQ 547 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 + + I V ++ + + VHH +ERG L + +D RR+ +H+ATHLL AL Sbjct: 548 DLIVSIESVNRQRD-VSVHHGTIERGQLSVGDLVTAQVDPTCRRRAQAHHTATHLLQAAL 606 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 ++ S +SQ GS + D LRFD + +T AEL+ +E +N I + + + M E Sbjct: 607 KQVVDSSISQAGSLVDFDRLRFDFHCPRAVTPAELEQLEALINGWITEAHSLEVQEMAIE 666 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A A+GA A+ G KY D VRVV V S LCGGTHV++T EI L IVSE+ + Sbjct: 667 AAKAAGAVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVSEAGVA 721 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 +GIRRIEA+ G ++L +D +K L+ KV + RV + EE + A Sbjct: 722 SGIRRIEAVAGPAVLAYLNERDVVVKQLSERFKVQPAEITARVAGLQEELKGATKALAAA 781 Query: 778 KLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG-IIMLVGIS 831 + +L I + + + VD L+S L ++ G ++L G+ Sbjct: 782 RSELAVAKAAALAAQAEAIGEHQLLVARLDGVDGGGLQSAAQGLADQLGDGAAVVLGGLP 841 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLAR--LSAKVLGG------GGGGGRPHMAQSGGPNGN 883 +I+V F +A+ + + +GG GGGGGRP++AQ+GG +G Sbjct: 842 DPSDLGKVILVAA-----FGKAVVAKGQKAGQFIGGVAKLCGGGGGGRPNLAQAGGRDGA 896 Query: 884 KADQAIAGVASFLKK 898 D A+ S L++ Sbjct: 897 ALDGALEQAKSSLQQ 911 >gi|311739532|ref|ZP_07713367.1| alanine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035] gi|311305348|gb|EFQ81416.1| alanine--tRNA ligase [Corynebacterium pseudogenitalium ATCC 33035] Length = 897 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 334/922 (36%), Positives = 496/922 (53%), Gaps = 66/922 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64 IR F + F +GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 9 IRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFAKGLATSI 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D+D VG T RH+TFF+M GNFSFG YFKE AI AW LLT D Sbjct: 68 QKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGQYFKEGAITNAWTLLTGSVDEGGFG 123 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA ++W+ G+ ++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 124 LDPDRLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 183 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233 G G G + RY+EIWNLVFMQ E + N + LPK +IDTG+G+ER+ Sbjct: 184 GPEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGIGKGNFEIVGELPKKNIDTGLGIERV 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADG 289 A +LQ+ N Y+ DL + +I +E++TG Y + + RV+ DH R+ LI DG Sbjct: 243 ACILQDVDNVYETDLLRPVIDVAEELTGATYGDKASHEDNIRFRVVADHSRTGMMLILDG 302 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P NEGRGY+LRR++RR + A+LLG M + + M +YPE+ + I Sbjct: 303 VTPGNEGRGYILRRLLRRIIRSAKLLGAKGATMERFMNTVMDTMTPSYPEIADNRERILR 362 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQD 403 +E++ F KTL+ G L D + L ++L G+ AF+L+DT+G P+D+ + Sbjct: 363 VAVNEEKAFLKTLESGTRLFDDAVQELKSTSRAKTAKVLPGEKAFELHDTYGFPIDLTLE 422 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + GL +D+ FN A+ EQR RA+A + G T+ + T F G++ L Sbjct: 423 MAQEAGLE-VDMDGFNDAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGFEEL 481 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 D +V+ +V+ GE V++ G++VEV+ D TP YAE Sbjct: 482 ------TSDARVI-----------------GLVRGGEKVDQVREGEQVEVILDHTPLYAE 518 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 AGGQ+ D G + L++ DVQK + ++VH A V G L MS+ +D Q R Sbjct: 519 AGGQMADRGRIMAGESLLEVNDVQKIGKKLWVHKATVTAGGLDLGMSVEAAVDEQWRHGA 578 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + HSATHL+H AL +LG Q GS P LRFD +++ ++ A+L+ I N I Sbjct: 579 TQAHSATHLIHAALRQVLGPTAVQAGSMNRPGYLRFDFNYTEQLSQAQLEEIALITNQAI 638 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N V T + E+A A GA AL G Y VRVV + GG S LCGGTHV+S+ Sbjct: 639 DSNFAVNTIETSLEEAKAMGAMALFGENYGKEVRVVEI----GGPFSIELCGGTHVASSA 694 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LKV ++ R+ ++ Sbjct: 695 EIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPERIAQL 754 Query: 764 WEEYRKLQL-IHAKRKLQLNVEDLSCHKIA-DVNFMSHII----SEVDSKELKSVMDALQ 817 E+ + + I RK QL A D+N I +L++V L+ Sbjct: 755 SEKLKAAEKEIETLRKQQLAARASEFVGAAKDINGFKVIALTLPEGTTGGDLRTVATDLR 814 Query: 818 KKI-QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ + ++++G + K + T+ + R + D+ + + + G GGG+P MA Sbjct: 815 NRLREEEAVIVLGAEDKGKFPFIAAATDKAVGRGVKSGDIVKEFGQYV-DGRGGGKPDMA 873 Query: 876 QSGGPNGNKADQAIAGVASFLK 897 Q G A++ A V L+ Sbjct: 874 QGSGSTAAGAERGFAAVKDMLE 895 >gi|255325071|ref|ZP_05366177.1| alanine--tRNA ligase [Corynebacterium tuberculostearicum SK141] gi|255297636|gb|EET76947.1| alanine--tRNA ligase [Corynebacterium tuberculostearicum SK141] Length = 894 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 336/924 (36%), Positives = 497/924 (53%), Gaps = 70/924 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64 IR F + F +GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 6 IRERFTQHFVNSGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFAKGLATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D+D VG T RH+TFF+M GNFSFG YFKE AI AW LLT D Sbjct: 65 QKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGQYFKEGAITNAWTLLTGSVDEGGFG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA ++W+ G+ ++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPDRLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233 G G G + RY+EIWNLVFMQ E + N + LPK +IDTG+G+ER+ Sbjct: 181 GPEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGIGKGNFEIVGELPKKNIDTGLGIERV 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY----EGNNIVNHRVIVDHLRSSSFLIADG 289 A +LQ+ N Y+ DL + +I +E++TG Y + + RV+ DH R+ LI DG Sbjct: 240 ACILQDVDNVYETDLLRPVIDVAEELTGATYGDKASHEDNIRFRVVADHSRTGMMLILDG 299 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P NEGRGY+LRR++RR + A+LLG M + + M +YPE+ + I Sbjct: 300 VTPGNEGRGYILRRLLRRIIRSAKLLGAKGATMERFMNTVMDTMTPSYPEIADNRERILR 359 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHGLPLDIMQD 403 +E++ F KTL+ G L D + L ++L G+ AF+L+DT+G P+D+ + Sbjct: 360 VAVNEEKAFLKTLESGTRLFDDAVQELKSTSRAKTAKVLPGEKAFELHDTYGFPIDLTLE 419 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 + GL +D+ FN A+ EQR RA+A + G T+ + T F G++ L Sbjct: 420 MAQEAGLE-VDMDGFNDAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGFEEL 478 Query: 464 RGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAE 523 D +V+ +V+ GE V++ G++VEV+ D TP YAE Sbjct: 479 ------TSDARVI-----------------GLVRGGEKVDQVREGEQVEVILDHTPLYAE 515 Query: 524 AGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 AGGQ+ D G + L++ DVQK + ++VH A V G L MS+ +D Q R Sbjct: 516 AGGQMADRGRIMAGESLLEVNDVQKIGKKLWVHKATVTAGGLDLGMSVEAAVDEQWRHGA 575 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + HSATHL+H AL +LG Q GS P LRFD +++ ++ A+L+ I N I Sbjct: 576 TQAHSATHLIHAALRQVLGPTAVQAGSMNRPGYLRFDFNYTEQLSQAQLEEIALITNQAI 635 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N V T + E+A A GA AL G Y VRVV + GG S LCGGTHV S+ Sbjct: 636 DSNFAVNTIETSLEEAKAMGAMALFGENYGKEVRVVEI----GGPFSIELCGGTHVGSSA 691 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LKV ++ R+ ++ Sbjct: 692 EIGPVSVLGESSVGSGARRIEAYSGLDAFRYYSKETALVEGVSRELKVQTEDLPERIAQL 751 Query: 764 WEEYRKLQL-IHAKRKLQLNV---EDLSCHKIADVNFMSHII----SEVDSKELKSVMDA 815 E+ + + I RK QL E +S K DVN I +L++V Sbjct: 752 SEKLKAAEKEIETLRKQQLAARASEFVSAAK--DVNGFKVIALTLPEGTTGGDLRTVATD 809 Query: 816 LQKKI-QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873 L+ ++ + ++++G + K + T+ + R + D+ + + + G GGG+P Sbjct: 810 LRNRLREEEAVIVLGAEDKGKFPFIAAATDKAVGRGVKSGDIVKEFGQYV-DGRGGGKPD 868 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 MAQ G A++ V L+ Sbjct: 869 MAQGSGSTAAGAERGFEAVKDMLE 892 >gi|260578810|ref|ZP_05846717.1| alanine--tRNA ligase [Corynebacterium jeikeium ATCC 43734] gi|258603108|gb|EEW16378.1| alanine--tRNA ligase [Corynebacterium jeikeium ATCC 43734] Length = 887 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 333/923 (36%), Positives = 490/923 (53%), Gaps = 74/923 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F+E F K GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P ++ T++ Sbjct: 6 IRQRFIEHFTKAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFENGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D+D VG T RH+TFF+M GNFSFG YFKE AI AW LLT + Sbjct: 65 QKCVRT----LDIDEVGITTRHNTFFQMAGNFSFGAYFKEGAITHAWTLLTDPVEEGGLG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TV+ +D+EA ++W K G+ KI R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPERLWVTVFTDDDEAAEIWNKKIGVPEHKIQRLGMEDNYWSMGIPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEG------ERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTG 227 G P +EG RYIEIWNLVFM+ E + N + LPK +IDTG Sbjct: 181 G-------PEHGQEGGPIVDDTRYIEIWNLVFMENERGEGLGKGNFEIVGKLPKKNIDTG 233 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFL 285 +G+ER+A +LQ+ N Y+ DL + +I +++VTG KY + N V RVI DH R+ L Sbjct: 234 LGIERVACILQDVDNVYETDLLRPVIDVAQEVTGAKYGADQANDVRFRVIADHSRTGLML 293 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 + DG+ P NEGRGY+LRR++RR + ARLLG T + + + M +YPE+ + Sbjct: 294 MLDGVTPGNEGRGYILRRLLRRIIRSARLLGATGETLEKFMDTVRETMTPSYPEIAENYE 353 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPLDIMQ 402 I +E++ F KTL+ G + D +H K+ + + GDVAF L+DTHG P+D+ Q Sbjct: 354 RIRAVALAEEKSFLKTLESGSQMFDN-WAHGAKERGEDTVPGDVAFSLHDTHGFPIDLTQ 412 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 ++ GL ++I F+ + EQ++RA+A + G ++ + T F GY+ Sbjct: 413 EMAAEAGLK-VEIDGFHDLMAEQKARAKADNNAKKLGHVDQTIYRPFVDNQPTVFTGYEN 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L ++ VL I++ G +VE A G V+V+ D+TPFYA Sbjct: 472 L------ADEGSVL-----------------GIIRDGALVETASEGAAVQVILDRTPFYA 508 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 EAGGQ+ D G ++ DVQK + ++VHH V G L + T+D R Q Sbjct: 509 EAGGQMADRGEMTTTSGSARVEDVQKVGKKVWVHHVTVSGGELAVGQKVQATVDKAWRHQ 568 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 HS THL+H AL +LG Q GS P LRFD + + +T +L IE+ N Sbjct: 569 ARQAHSGTHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYGEQLTENQLNQIEEIANGA 628 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + + V T + E+A A GA AL G Y VRVV + GG S LCGG HV + Sbjct: 629 VDSDYQVNTIETSLEEAKAMGAMALFGENYGSEVRVVEI----GGPFSMELCGGIHVEHS 684 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 ++ + ++ ESS+ +G+RRIEA TG + L + + LA+ LK + R++ Sbjct: 685 SQVGPISVLGESSVGSGVRRIEAYTGMDSFRFLSTEKSLVAGLATSLKTPSEELPERIDA 744 Query: 763 IWEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSV-MDA 815 + + + QL + + Q+ I +V ++ + E V + +L+++ MDA Sbjct: 745 LTAKLKAAEKQIQQLRAQQLQGQVGQLVEKAETIGEVKVLAERLPEGVAAGDLRTLAMDA 804 Query: 816 LQK-KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + + +++ + EK V + A +L + + + G GGG+P M Sbjct: 805 KNRLGSEPAVVVFASVDGEKVPFVAAANDAAVDKGIKAGELVKAFGEKV-SGRGGGKPAM 863 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 AQ G + I V S L+ Sbjct: 864 AQGSGSDAAGIPAGIEAVKSALR 886 >gi|300934543|ref|ZP_07149799.1| alanyl-tRNA synthetase [Corynebacterium resistens DSM 45100] Length = 887 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 318/874 (36%), Positives = 465/874 (53%), Gaps = 74/874 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F++ F GH +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++QK Sbjct: 6 IRERFIKHFTNAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFATATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LL F LD Sbjct: 65 CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKEGAIKHAWALLINSVADGGFGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY +D+EA ++W+K G+ A++I R+ DN+WSM GPCGPCSEI++D+G Sbjct: 121 PDRLWVTVYTDDDEAAEIWEKKVGVPAERIQRLGMADNYWSMGVPGPCGPCSEIYYDRG- 179 Query: 182 CIPGGLPGSSEEG------ERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMG 229 P +EG RYIEIWNLVFM+ E + N + LPK +IDTGMG Sbjct: 180 ------PEHGKEGGPIVDDTRYIEIWNLVFMENERGEGIGKDNFEIVGPLPKKNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIA 287 +ER+A +LQ+ N Y+ DL + +I +E++TG Y N+ V RVI DH R+ L+ Sbjct: 234 VERVACILQDVENVYETDLLRPVIDEAERLTGATYGDNHTDNVRFRVIADHCRTGLMLML 293 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P NEGRGY+LRR++RR + ARLLG T M L+ + M +YPE+ I Sbjct: 294 DGVTPGNEGRGYILRRLLRRIIRSARLLGATGTTMERLMDTVRQTMTPSYPEIADNWERI 353 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 E++ F KTL+ G L + + + +++G AF L+DTHG P D+ ++ Sbjct: 354 RSVAVGEEKAFLKTLESGSQLFENAAAQAKSEGKSVVDGATAFSLHDTHGFPFDLTVEMA 413 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+ +D F++ + EQ++RA+A + G ++ + T F GY + Sbjct: 414 NEAGMT-VDEAGFHELMAEQKARAKADNNAKKMGHADQTIYRPFVDNHPTAFTGYTHI-- 470 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 ED S V I+++G++V+ +G + +++ D+TPFYAEAG Sbjct: 471 -----EDE----------------SAVLGIIKEGQLVDRVAAGDQAQIIVDRTPFYAEAG 509 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ D G G+ +TDVQK + ++VH A V G L L ++D R Q Sbjct: 510 GQMADRGTFRGESGAADVTDVQKVGKKVWVHFATVTGGELAVGQKLTASVDDAWRHQARQ 569 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS THL+H AL +LG Q GS P LRFD + +T+ +L IED N + Sbjct: 570 AHSGTHLIHAALRDVLGPTAVQAGSMNRPGYLRFDFQYGDQLTAEQLSRIEDIANAAVDS 629 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + E+A A GA AL G Y D VRVV + GG S LCGG HV + +I Sbjct: 630 DYKVNTIETSLEEARAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGIHVEHSSQI 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV----- 760 + ++ ESS+ +G+RRIEA TG + L G + LA+ LK + R+ Sbjct: 686 GPIAVLGESSVGSGVRRIEAYTGMDSFRFLSGGKNVVADLAANLKTPSEELPERIDALTA 745 Query: 761 -----EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815 E+ ++ R QL+ L E + K+ V + +S D + + + DA Sbjct: 746 KLKAAEKQIQQMRNQQLLAGVGDLVAKAETIGGIKVVAVQ-LPEGVSAGDVRTMAT--DA 802 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849 + ++ S + K + VT+ +D+ Sbjct: 803 KARFGSDAAVVFFTASDDGKVPFVAAVTDAAVDK 836 >gi|288801454|ref|ZP_06406907.1| tRNA ligase [Prevotella sp. oral taxon 299 str. F0039] gi|288331665|gb|EFC70150.1| tRNA ligase [Prevotella sp. oral taxon 299 str. F0039] Length = 872 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 321/915 (35%), Positives = 504/915 (55%), Gaps = 77/915 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR ++ +FF GH ++PS+ ++ +DPTLMFTN+GM +K+I G + P + Sbjct: 3 ANEIRESYKQFFASKGHTIVPSAPMVIKDDPTLMFTNAGMNQWKDIILGTKDPEPRRRAD 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QKC+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+ L LD + Sbjct: 63 SQKCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKEEAIDYAWEYLVDVLHLDPK 122 Query: 124 RLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 LY+TV++ D++A W+K L D II +DNFW M +TGPCGPCSEI Sbjct: 123 DLYVTVFEGSKEDNIARDDDAASFWRK--HLPEDHIINGNKHDNFWEMGDTGPCGPCSEI 180 Query: 176 FFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 D + + G +++ + IEIWN+VFMQF +++ L IDTGMG E Sbjct: 181 HLDSRTPEEKLKVKGSELVNKDDPQVIEIWNIVFMQFNRKSDGSLEPLSMNVIDTGMGFE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289 R+ LQ K +NYD D+F+ +I+ +++ Y +N V+ RVI DHLR+ +F IADG Sbjct: 241 RLVRALQGKNSNYDTDIFQPIIKEICKLSHKNYGEDNAVDVAMRVIADHLRAVAFSIADG 300 Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+N GYV+RRI+RRA+ YA L E + L+P L EMG AYPEL + LI Sbjct: 301 QLPSNAKAGYVIRRILRRAIRYAYTFLHQREAFIYRLIPTLIAEMGQAYPELTAQRELIG 360 Query: 349 ETLRSEDERFGKTLDRGLVLLDG---VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 ++ E++ F +TL++G+ +L+ VL GK E L+G AF+L+DT+G PLD+ + ++ Sbjct: 361 RVIKEEEDSFLRTLEKGISMLNDAIEVLKKEGKSE-LDGVQAFRLFDTYGFPLDLTE-LI 418 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 C ++ F++ + +Q+ RAR ++ + W L G QF+GYD Sbjct: 419 CREHQITVNAEQFDEEMRKQKERARNAAVVESTD-----WVELAA--GEQQFVGYDYT-- 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + CQ I++ ++ ++ E+V + TPFY E G Sbjct: 470 --------EYECQ----------------ILRYRQVTQK--KNTYFELVLNNTPFYGEMG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GD G + + ++I D K+ G +H IV+ + S + +D NR + Sbjct: 504 GQVGDKGVLVNEDETIEIIDT-KRENGQSIH--IVKTLPKDVKASFMACVDTDNRNASAA 560 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATHL+ +AL +LG HV Q GS ++ + LRFD +H + +T +L+ +E VN +I + Sbjct: 561 NHTATHLVDYALKQVLGDHVEQKGSYVSTESLRFDFSHFQKVTDEQLREVERLVNQLIRE 620 Query: 646 NLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + P+ R E+A GA ++ G KY D+VRVV S CGG H +STG Sbjct: 621 DYPMDEHRDTPIEEAREMGAVSIFGEKYGDKVRVVRFG------PSCEFCGGIHATSTGR 674 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 + + IV+E+S+ AG+RRIEAITG+ + ++ ++++ + ++ ++ G VE+ Sbjct: 675 LGMFKIVTETSVAAGVRRIEAITGENCEELVYSLEDTIRAVKALFNNTK-DLKGAVEKFI 733 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI-----ISEVDSKELKSVMDALQKK 819 EE ++ K K Q NVE L + + I + +D+ + K ++ +++ Sbjct: 734 EENEAMKKEVEKFKAQ-NVERLKEFLLKGAKQQNGITIVTGVLPIDASDAKDLVFKVREA 792 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 S ++ ++G + K + +++++DL+ NA + R +AK++ GGGGG+PH A + Sbjct: 793 NPSHLLCVIGTTAGNKPLLSVMLSDDLVKEHNLNAGAMIREAAKLI-KGGGGGQPHYASA 851 Query: 878 GGPNGNKADQAIAGV 892 GG + + AI V Sbjct: 852 GGKDLEGLNAAIEKV 866 >gi|297812419|ref|XP_002874093.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319930|gb|EFH50352.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp. lyrata] Length = 978 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 335/918 (36%), Positives = 506/918 (55%), Gaps = 91/918 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 SIR FLEFF GH++LPS+SL+P DPT++ T +GM+ FK IF G+ TT Q Sbjct: 82 SIRRRFLEFFASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPREVPCATTAQ 140 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 +C+R NDL+NVG+T RHHTFFEMLGNFSFG YFK+ AI+ AW+L T EF L R+ Sbjct: 141 RCIRT----NDLENVGKTARHHTFFEMLGNFSFGDYFKKEAIRWAWELSTIEFGLPANRV 196 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++++Y++D+EAF++WK G+ ++I R+ DNFW+ TGPCGPCSE+++D Sbjct: 197 WVSIYEDDDEAFEIWKNEVGVPVERIKRMGEADNFWTSGPTGPCGPCSELYYDFYPERGS 256 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM---SIDTGMGLERMATVLQEKTN 242 + R+IE +NLVFMQ+ NK E +L + +IDTG+GLER+A +LQ+ N Sbjct: 257 DDDVDLGDDTRFIEFYNLVFMQY---NKTEDGLLEPLKQKNIDTGLGLERIAQILQKVPN 313 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL +I ++ + Y+ N + +VI DH+R+ +LI+DG+ P+N GRGY Sbjct: 314 NYETDLIYPIIAKISELANISYDSANEKAKTSLKVIADHIRAVVYLISDGVSPSNIGRGY 373 Query: 300 VLRRIMRRAMCYARLLGYTE----PLMMHLLPALCTEM--GSAYPE---LIQAKLLIEET 350 V+RR++RRA+ + LG E L LPA+ ++ S Y + ++A +IEE Sbjct: 374 VVRRLIRRAVRKGKSLGINEYRNGNLKGAFLPAVAEKVIELSTYIDSDVKLKAPRIIEE- 432 Query: 351 LRSEDERFGKTLDRGLVLLD-------GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 +R E+ F KTL+RG LLD + L+G AF LYDT+G P++I + Sbjct: 433 IRQEELHFKKTLERGEKLLDQKLNDALSIADKTKNTPYLDGKDAFLLYDTYGFPVEITAE 492 Query: 404 ILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 + RG++ ID+ F +E QR +++ AH++ T + + + T+F+GYD Sbjct: 493 VAEERGVS-IDMKGFEVEMENQRRQSQAAHNV---VKLTVEDDADITKNIADTEFLGYDS 548 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L ++VK+++ G+ V + G KVE++ D+TPFYA Sbjct: 549 L-----------------------SARAVVKSLLVDGKPVIKVSEGSKVEILLDRTPFYA 585 Query: 523 EAGGQLGDTGCAI--GDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 E+GGQ+ D G DG + ++++DVQK + IFVH V+ G L + +D Sbjct: 586 ESGGQIADHGFLYVNSDGNQENAVVEVSDVQKSLK-IFVHKGTVKSGALEVGKEVEAAVD 644 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R++ ++H+ATHLL AL ++G SQ GS + D LRFD ++ + ELK IE Sbjct: 645 ADLRQRAKVHHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNINRSLHDNELKEIE 704 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND-RVRVVSVEYEDGGVHSSALCG 695 +N I + T+++ DA +GA A+ G KY++ VRVV V GV S LCG Sbjct: 705 RLINRWIGDATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVP----GV-SMELCG 759 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV +T EI I+SE I +GIRRIEA+ G+ ++ +D ++ L S LKV Sbjct: 760 GTHVGNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEK 819 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSC-HKIA-------DVNFMSHIISEVDSK 807 V+ VE + +E R + + + + V S K A + + + + D+ Sbjct: 820 VIETVENLLKELRAAKKEASDLRSKAAVYKASVISKNAFTVGTSQTIRVLVDSMDDTDAD 879 Query: 808 ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--- 864 LKS + L ++ + +++G S EK L+ V L + K +G Sbjct: 880 SLKSAAEHLISTLEDPVAVVLGSSPEKDKVSLVAAFSP-----GVVSLGVQAGKFIGPIA 934 Query: 865 ---GGGGGGRPHMAQSGG 879 GGGGGG+P+ AQ+GG Sbjct: 935 KLCGGGGGGKPNFAQAGG 952 >gi|19552844|ref|NP_600846.1| alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] gi|62390515|ref|YP_225917.1| alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] gi|24418687|sp|Q8NQ22|SYA_CORGL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|21324401|dbj|BAB99025.1| Alanyl-tRNA synthetase [Corynebacterium glutamicum ATCC 13032] gi|41325852|emb|CAF21641.1| ALANYL-TRNA SYNTHETASE [Corynebacterium glutamicum ATCC 13032] Length = 888 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 329/902 (36%), Positives = 497/902 (55%), Gaps = 64/902 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F F GH+ +PS+SLI +DP L+F N+GMVPFK F GQ+ P ++ T++ Sbjct: 6 IRERFTNHFVNAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFENGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT F Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWGLLTGSVADGGFG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA ++W+K G+ +++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPERLWVTVYLDDDEAAEIWEKKIGVPSERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERM 233 GE G G + RY+EIWNLVFM+ E Q ++ F LPK +IDTGMG+ER+ Sbjct: 181 GEKY-GKEGGPVADDNRYMEIWNLVFMEKERGQGIGKDNFDILGDLPKKNIDTGMGVERV 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ+ N Y+ DL + +I +E +TG KY +N + RVI DH R+ LI DG+ Sbjct: 240 ACILQDVENVYETDLLRPVIDVAETLTGTKYGSDNTSDIRFRVIADHSRTGMMLILDGVT 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + I Sbjct: 300 PGNEGRGYILRRLLRRIIRSARLLGATGETMEQFMNTIMDTMTPSYPEIADNRERIMRVA 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL G L + + + + G AF L+DT+G P+D+ ++ G Sbjct: 360 VTEERAFLKTLVSGTHLFEEAATSIKAAGSTKVAGAQAFALHDTYGFPIDLTLEMAAEAG 419 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ F+ + EQRSRA+A S G T+ + T F G++ L Sbjct: 420 LE-VDVEGFDSLMAEQRSRAKADSQAKKHGHTDLSIYREWVDNNPTVFTGFEELDSQ--- 475 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S V ++ G + EA GQ+VEV+ DQ+P YAE+GGQLG Sbjct: 476 --------------------SKVLGLLSDGAKISEATEGQEVEVILDQSPLYAESGGQLG 515 Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +GD + L + DVQK + ++VH A+V G L +V ++D Q R H+ Sbjct: 516 DRGQILLGDTV-LDVHDVQKIGKKLWVHKALVANGGLAVGDEVVASVDKQWRHAARQAHT 574 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LG Q GS P LRFD +++ +T A+++ I+ N+ + + Sbjct: 575 ATHLIHAALRQVLGPTALQAGSMNKPGYLRFDFNYTEQLTPAQVEQIQAITNEAVDTDWA 634 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + E+A A GA AL G Y VRVV + GG S LCGGTHV+ + +I + Sbjct: 635 VNTVETSLEEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVAHSSQIGPV 690 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY- 767 ++ ESSI +G+RRIEA +G + ++L + + LAS LK + RV ++ ++ Sbjct: 691 ALLGESSIGSGVRRIEAYSGLNSFNYLSKERALAEGLASSLKAPSEELPERVAQLVDKLK 750 Query: 768 ---RKLQLIHAKRKLQLNVEDL--SCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI- 820 ++++ +H +++L DL + +I V + + ++ +L+++ L+ K+ Sbjct: 751 AAEKEIEALH-RQQLMAQTADLLNNAQEIGGVTTLLLRVKDNTNAGDLRTIATTLKDKLG 809 Query: 821 -QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + G++++ + K V+ + ++ +L +L + G GGG+ +AQ G Sbjct: 810 DREGVLVIASDNAGKVPFVVAATKAAVARGAHSGNLVKLVGSYI-DGRGGGKADLAQGSG 868 Query: 880 PN 881 N Sbjct: 869 AN 870 >gi|227503536|ref|ZP_03933585.1| alanyl-tRNA synthetase [Corynebacterium accolens ATCC 49725] gi|227075572|gb|EEI13535.1| alanyl-tRNA synthetase [Corynebacterium accolens ATCC 49725] Length = 896 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 334/923 (36%), Positives = 504/923 (54%), Gaps = 68/923 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64 IR F + F +GHE++PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 8 IRERFTQHFVNSGHEVVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFSQGLATSI 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW+LLTK+ F Sbjct: 67 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISNAWNLLTKDVADGGFG 122 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA ++W+ G+ ++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 123 LDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMEDNYWSMGVPGPCGPCSEIYYDR 182 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI---LPKMSIDTGMGLERM 233 G G G + RY+EIWNLVFMQ E+ K + I LPK +IDTG+G+ER+ Sbjct: 183 GSEY-GKDGGPIADDNRYMEIWNLVFMQNERGEGTGKGDFKIVGELPKKNIDTGLGIERV 241 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGNNIVNHRVIVDHLRSSSFLIAD 288 A +LQ N Y+ DL + +I +E++TG Y + +NI RV+ DH R+ LI D Sbjct: 242 ACLLQGVDNVYETDLLRPVIDVAEELTGATYGEKATQQDNI-RFRVVADHSRTGMMLILD 300 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGY+LRR++RR + A+LLG M + + M +YPE+ + I Sbjct: 301 GVTPGNEGRGYILRRLLRRIIRSAKLLGAEGATMERFMNTVMDTMTPSYPEIADNRERIL 360 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDE-ILNGDVAFKLYDTHGLPLDIMQ 402 +E++ F KTL+ G L D + +H K + +L+GD AF+L+DT+G P+D+ Sbjct: 361 RVAINEEKAFLKTLESGTKLFDEAVDDLRSTHRAKTQKVLSGDKAFELHDTYGFPIDLTL 420 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 ++ GL +D+ FN A+ EQR RA+A + G T+ + T F GY+ Sbjct: 421 EMAQEAGLD-VDMDGFNAAMGEQRRRAKADNQAKKHGHTDLSLYRDWVDNNPTVFTGYE- 478 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 +L +G + I +V+ G+ V E G +VEV+ D +P YA Sbjct: 479 --------------------ELVSGANVI--GLVKDGQKVNEVHEGDEVEVILDHSPLYA 516 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E+GGQ+ D G L++ DVQK + ++VH A V G L MS+ ++D + R Sbjct: 517 ESGGQMADRGRISAGESLLEVNDVQKIGKKLWVHKASVTAGGLDLGMSVEASVDEKWRHG 576 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + HSATHL+H AL +LG Q GS P LRFD +++ ++ +++ I N Sbjct: 577 ATQAHSATHLIHAALRQVLGPTAVQAGSLNRPGYLRFDFNYTEQLSQEQMEEIALITNQA 636 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I N+ V T + E+A A GA AL G Y ++VRVV + GG S LCGGTHV S+ Sbjct: 637 IDSNMAVNTIETSLEEAKAMGAMALFGENYGNQVRVVEI----GGPFSIELCGGTHVGSS 692 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 EI + ++ ESS+ +G RRIEA +G A + + ++ ++ LKV + R+ + Sbjct: 693 AEIGPVSVLGESSVGSGARRIEAYSGMDAFRYYSKETALVEGVSRELKVQSEELPERISQ 752 Query: 763 IWEEYRKLQL-IHAKRKLQLNVEDLSCHKIA-DVNFMSHIISEV----DSKELKSVMDAL 816 + E + + I RK QL A +VN + I ++ +L++V + Sbjct: 753 LSERLKAAEKEIEGLRKAQLTARASEIIDSATEVNGIKTITLQLPDGTSGGDLRTVATDI 812 Query: 817 QKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + +++ + +I+L + K K + + + + A D+ + + + G GGG+P M Sbjct: 813 RNRMKDTAAVIVLGAVDKGKFPFIAAATGKAVDEGVKAGDIVKRLGEYV-NGRGGGKPDM 871 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 AQ G A + V L+ Sbjct: 872 AQGSGTAPEGAQRGFEAVKDLLQ 894 >gi|227495468|ref|ZP_03925784.1| alanine--tRNA ligase [Actinomyces coleocanis DSM 15436] gi|226831015|gb|EEH63398.1| alanine--tRNA ligase [Actinomyces coleocanis DSM 15436] Length = 895 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 324/930 (34%), Positives = 493/930 (53%), Gaps = 75/930 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I + E+FQ+NGHE+ PS L+ DP+++FT +GMVPF G E + + Sbjct: 3 TAEIAHRWKEYFQRNGHEIRPSVPLV-SPDPSILFTIAGMVPFIPYIIGTEPAPWPRAAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKC+R ND++NVGRT RH TFF+M GNFSFG YFKE AI AW+LLT + Sbjct: 62 VQKCLRT----NDIENVGRTTRHGTFFQMNGNFSFGDYFKEGAIDFAWELLTGSQETGHY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RL++T+++ED E++ + + GL I+R+ ++NFW + GP GPC+E +D Sbjct: 118 GLDGDRLWVTLWEEDAESYDVLTRKIGLDPKHIVRLPRHENFWDTGQPGPAGPCAEWHYD 177 Query: 179 QGECI-PGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLE 231 +G P + G+ + G +RY+EIWNLVF Q+ E K + L +IDTG GLE Sbjct: 178 RGPSYGPEAVGGNVDPGGDRYLEIWNLVFDQYLRGEGSGKDYPLLGELDAKAIDTGAGLE 237 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----NIVNHRVIVDHLRSSSFLIA 287 R+A V+Q K N Y+ID + +I A+E ++G Y G + V R++ DH+RSS LI Sbjct: 238 RLAFVMQNKPNMYEIDEVRPVISAAEMMSGRTYLGGGDPEDDVRMRIVADHIRSSMMLIN 297 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG++P N+GRGYVLRR++RRA+ RLLG + L+P M ++YP+L I Sbjct: 298 DGVVPGNDGRGYVLRRLIRRAVRSMRLLGVDTATLPTLMPVSRDAMKASYPDLETNWERI 357 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDI 404 + +E+E F +TL G +LD ++ G L+G+ AF+L+DT+G P+D+ ++ Sbjct: 358 ADVAYAEEETFRRTLSAGTTILDTAVAKAKAAGSATKLSGEEAFQLHDTYGFPIDLTLEM 417 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGYDL 462 +G+ +D F + + EQ++RAR +L +G + +I+ + + G + F+GY Sbjct: 418 AKEQGV-DVDEARFRELMLEQKTRARQDALAKKAGHVDSRIYHEFQNQLGGGSYFLGY-- 474 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + SI+ IV +G V +EV+ D+TPF+A Sbjct: 475 ---------------------TESETESIISGIVSEGAAVPALTGPADIEVILDKTPFWA 513 Query: 523 EAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQL D G G ++I DVQ +G+ VH + G L + V I R Sbjct: 514 EMGGQLADHGTIRTTGGAIVEIDDVQAPIKGLTVHRGRLVEGTLALGETAVAKICTDRRL 573 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ H+ATH++H L +G +Q GS +P LRFD H+ + L +E VN Sbjct: 574 AIARAHTATHMVHKGLHEFIGEGATQAGSENSPSRLRFDFRHTSAVPVDVLGELEARVNQ 633 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 +A NL V IMN +DA A GA AL G KY + VRVV++ G S LC GTHV + Sbjct: 634 QLANNLTVTDTIMNIDDAKAMGAMALFGEKYGNEVRVVNI----GDGWSVELCAGTHVPT 689 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 TG I + ++ E+SI +G+RRI+A+ G A +H + + L + + G+VE Sbjct: 690 TGHIGRVALLGEASIGSGVRRIDALVGDGAYAHQAKEHALVSQLTGLIGGKSDELPGKVE 749 Query: 762 EIWEEYR----------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE-LK 810 + ++ + + Q++ +L VE L VN + E S E L+ Sbjct: 750 SLLKKLKDAEKQIAKLGEAQMLARAAELATQVERLGAFDAVIVN-----LGEAASAEGLR 804 Query: 811 S-VMDALQKKIQSGIIMLVGISKEKKASVLIVVTED--LLDRFNAVDLARLSAKVLGGGG 867 S V+D + ++ +++ GI ++V T + A L RL+++ L GG Sbjct: 805 SLVLDVRARLGEANPVVVAGIGVISDKPQVVVATNEAARGAGAKAGALVRLASQTL-QGG 863 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GGGR +AQ GG N +A+ V L+ Sbjct: 864 GGGRDDVAQGGGQNPAAVPEAVEVVKQALR 893 >gi|256825088|ref|YP_003149048.1| alanyl-tRNA synthetase [Kytococcus sedentarius DSM 20547] gi|256688481|gb|ACV06283.1| alanyl-tRNA synthetase [Kytococcus sedentarius DSM 20547] Length = 893 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 316/875 (36%), Positives = 472/875 (53%), Gaps = 76/875 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L +F+ H ++PS+ LI +DP L+F N+GMVPFK GQ+ P +Q T+ Sbjct: 3 TAEIRRRWLAYFEGKDHAVVPSAPLI-HDDPNLLFVNAGMVPFKPYLLGQQTPPWQRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKCVR G D++ VG+T+RH TFF+M GNFSFG YFK AI +AW+ LT Sbjct: 62 VQKCVRTG----DIEEVGKTSRHGTFFQMNGNFSFGDYFKAGAISMAWEFLTTPEAGGGL 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 L + L+ TVY++D+EAF LW +++ L A++I+R DN+WSM GP GP SEIF D Sbjct: 118 GLRKDDLWATVYNDDDEAFDLWLELTDLPAERIVRRDEEDNYWSMGVPGPGGPSSEIFLD 177 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFI---LPKMSIDTGMGLE 231 +G E G P E+ R++EIWNLVFMQ E ++K + I LP+ +IDTGMGLE Sbjct: 178 RGAEYGRDGGPAVDED--RFMEIWNLVFMQHELSAVRSKSDFDIAGNLPQQNIDTGMGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN----------IVNHRVIVDHLRS 281 R+A+VLQ N Y+ID ++ + ++ G++Y ++ V+ RV+ DH+RS Sbjct: 236 RIASVLQGVDNLYEIDQVYPVLDRAAEMAGVEYGASSGHIASESHPHDVHLRVVADHVRS 295 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 LI DG++P NEGRGYVLRR++RRA+ RLLG T+P + LLP MG +YPEL+ Sbjct: 296 GLMLIGDGVVPGNEGRGYVLRRMLRRAVRSMRLLGVTDPALPELLPISRDLMGESYPELV 355 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPL 398 I + +E++ F +TL+ G + D V + KD ++ GD AF L+DT+G P+ Sbjct: 356 SGWDRISQIAYAEEDAFRRTLEAGTTIFD-VAAGQTKDAGQKVFPGDKAFALHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG-TTEKIWFSLKEKYGATQF 457 D+ ++ +GLA +D F + EQR RA+A + SG ++W L+ GAT + Sbjct: 415 DLTLEMAAEQGLA-VDEAGFRGLMTEQRERAKADARAKKSGHANTEVWRELR-SLGATDW 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 Y L T+G V +V+ GE V G+ +VV D Sbjct: 473 RAYTDL--------------------ATDGR---VVGLVRDGERVGGLSQGETGQVVLDT 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE+GGQ+ D G DG RL++ DVQ+ +G+ H V G + +D Sbjct: 510 TSFYAESGGQVADAGIITLDGARLEVVDVQRPVKGLVAHTVKVASGEVTEGADARAEVDP 569 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R + + HS TH++H AL +LG Q+GS P LR D + + +A +E+ Sbjct: 570 TWRIEAAQAHSGTHVVHAALRQVLGPSALQSGSYNKPGYLRLDFAWNGALDAATRSELEE 629 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N + +LPV M+ A GA AL G Y++ VRV+ + GG S LCGGT Sbjct: 630 VANLAVRDDLPVSAHWMSLPAAREWGALALFGETYDEDVRVIEI----GGPWSRELCGGT 685 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL-------- 749 HV + +I L + ESS+ +G RR+EA G A HL + + L++ Sbjct: 686 HVQHSSQIGALTLTGESSVGSGSRRLEAFVGLNALRHLATERALVAELSTIAGVQPTELK 745 Query: 750 -KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808 KVSQ +V R++E E ++ A+ V++ ++ + ++ + EVD + Sbjct: 746 DKVSQ--LVARLKETEREITAMKRQQAQGATAGLVDE--AEQVGGIRLVTKELPEVDGGD 801 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 L++V ++ + + +S V++V T Sbjct: 802 LRTVAQDVRGRFGDAAAAVALVSTAGAKPVVVVAT 836 >gi|255072777|ref|XP_002500063.1| predicted protein [Micromonas sp. RCC299] gi|226515325|gb|ACO61321.1| predicted protein [Micromonas sp. RCC299] Length = 923 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 315/785 (40%), Positives = 450/785 (57%), Gaps = 53/785 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR FLEF+++ GH LPSSSL+P DPT++ T +GM+ FK +F GQ + TT Sbjct: 30 SGIRRRFLEFYEQRGHARLPSSSLVP-EDPTVLLTIAGMLQFKPVFMGQAERAVPCATTT 88 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR ND++NVG T RHHTFFEMLGNFSFG YFK+ AIQ AW+L TKE+ LD+ R Sbjct: 89 QKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIQYAWELATKEYGLDETR 144 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 +Y++V+ ED+EA+ +W+ + G+ ++I R+ DNFW+ TGPCGPCSE+++D Sbjct: 145 IYVSVFREDDEAYAIWRDVVGVPEERIKRMDEADNFWAAGPTGPCGPCSELYWDF-HPER 203 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G E+ R+IE +NLVFM+ + + L +IDTGMGLERMA +LQ K NNY Sbjct: 204 GAEGADLEDDSRFIEFYNLVFMEMNRDASGKTAPLKNKNIDTGMGLERMAQILQGKPNNY 263 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL + +I + + G+ Y+ + +VI DH R+ ++L++DG+LP+N GRGY++ Sbjct: 264 ETDLIRPIIDKAASMAGISYDDADDATKLKLKVIGDHTRAVAYLVSDGVLPSNVGRGYIV 323 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEM-----GSAYPELIQAKLLIEETLRSEDE 356 RR++RR + RLLG P E+ G PE+ I E E+ Sbjct: 324 RRLLRRVVRCGRLLGVKAPEGAQAFTPTIAEVAVGMSGDCDPEVANRAPKIYEEFEREEL 383 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEI----LNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 RF KTL RG +L +++ + L+GD AF LYDT+G PLDI D+ G+A Sbjct: 384 RFAKTLGRGEEILADMIAAAKAKDAEAPELSGDDAFTLYDTYGFPLDITTDVATEEGVA- 442 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSKFMKE 471 +D+ F A+E R+ +R + + T + ++ ++ G T+F GY GS Sbjct: 443 VDVEGFEAAMEIARTLSRDARVTVDV-TAGDLLATIADELGEPTRFTGY----GS----- 492 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 L ++ S V+AIV+ GE V+ A +G+ VEVV D TPFYAE GGQ+GD Sbjct: 493 ----LVEQ---------SVTVRAIVRAGERVDSAAAGETVEVVLDATPFYAEGGGQVGDE 539 Query: 532 G-CAIGDGIRLQITDVQKKAEG-IFVHHAIV---ERGILRTEMSLVLTIDYQNRRQLSIN 586 G + +G+ L + D +K A G +FVH V G + ++ +D ++RR+ N Sbjct: 540 GEIQLANGVVLSVRDCRKAAGGRVFVHVCEVTGDASGSVSVGDAVTAAVDAESRRRAKAN 599 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLL AL ++G VSQ GS + + LRFD T A+L+ IE VN I Sbjct: 600 HTATHLLQSALKRVVGEDVSQAGSLVNTERLRFDFNAPAGPTPAQLEEIEALVNGWIGDA 659 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 +V + M +A + GA A+ G KY D VRVV V S LCGGTHV++T EI Sbjct: 660 TNLVAQEMPIAEAKSRGATAMFGEKYGDVVRVVDVP-----GVSMELCGGTHVANTAEIG 714 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 IVSE+ I AG+RRIEA++G L ++ ++ LA L+V + GRV + ++ Sbjct: 715 GFKIVSEAGIAAGVRRIEAVSGPGVVELLNQREGVVRELAGALRVPPEEIAGRVTSLMDD 774 Query: 767 YRKLQ 771 R Q Sbjct: 775 LRAAQ 779 >gi|146299654|ref|YP_001194245.1| alanyl-tRNA synthetase [Flavobacterium johnsoniae UW101] gi|205830093|sp|A5FIP9|SYA_FLAJO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|146154072|gb|ABQ04926.1| alanyl-tRNA synthetase [Flavobacterium johnsoniae UW101] Length = 879 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 338/931 (36%), Positives = 503/931 (54%), Gaps = 97/931 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FL+FF+ GH ++PS+ ++ +DPTLMF NSGM FK F G P + QK Sbjct: 6 VRKQFLDFFESKGHTIVPSAPIVLKDDPTLMFNNSGMAQFKEFFLGNGTPKSPRIADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + + LY Sbjct: 66 CLRVSGKHNDLEEVGIDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIPKENLY 125 Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++V++ D+EA+ +WK + + D+II DNFW M + GPCGPCSEI D Sbjct: 126 VSVFEGSKEDNVPFDQEAWDIWKTL--IDEDRIILGNKKDNFWEMGDQGPCGPCSEIHVD 183 Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + + + G + + + +EIWN VFM+F ++ LP +DTGMG ER+ Sbjct: 184 LRSAEEKALVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSS 283 LQ KT+NYD D+F LI+ E +TG KY N++ + RV+ DH+R+ + Sbjct: 244 MALQGKTSNYDTDVFMPLIREIETITGAKYTTNDVTGISEEQNKMNIAIRVVADHVRAVA 303 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 F IADG LP+N G GYV+RRI+RRA+ Y LG EP + L+ L +MG ++PE+ Sbjct: 304 FAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLGTKEPFIYKLVETLSEQMGDSFPEIRT 363 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 K L +R E+ F KTLD+GL+LLD V+ + D I +G AF+LYDT+G P+D+ Sbjct: 364 QKALCSNVIREEENSFLKTLDQGLILLDAVILNNTGDTI-DGKKAFELYDTYGFPIDLTA 422 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL RGL +D F + L+ Q+ R+RA S T W + E +F+GYD Sbjct: 423 LILSERGLK-LDEEGFQEQLQLQKERSRA-----ASKVTAGDWNVIVED-DIQEFVGYDR 475 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L + + R+V V+ GEI ++VF+ TPFY Sbjct: 476 LSQQVKITKYRRVES------------------VKDGEI---------FQLVFNATPFYG 508 Query: 523 EAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E+GGQ GD G +G + I D +K+ + I T ++V D R Sbjct: 509 ESGGQTGDKGYLEAQNGDIVYIIDTKKENNQTIHLTQSLPENITGTFNAVV---DANQRA 565 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + S NHSATHLLH L ILG+H+ Q GS + LRFD +H +T EL +E+ VN Sbjct: 566 KTSSNHSATHLLHQGLRKILGTHIEQKGSMVRNASLRFDFSHFSKVTDEELLEVENFVNA 625 Query: 642 IIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I ++LP++ R + +E A+ GA AL G KY D VR ++++ D S LCGGTHV+ Sbjct: 626 RIRESLPLIEKRAIPKEQALEDGAIALFGEKYGDLVR--TIKFGD----SVELCGGTHVA 679 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 +T +I IVSE ++ AGIRRIEAIT + A+ + Q L + LK +Q + V + Sbjct: 680 NTSDIWHFKIVSEGAVAAGIRRIEAITSEAAKEYFESQAVSLAEIKEALKNAQ-DPVKSI 738 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVD-----SKE 808 + +E +L K++L+ ++D + + AD +N + + +VD +K+ Sbjct: 739 LALQDENAQL-----KKQLEALLKDKAKNMKADLAKELQEINGVQFLAKQVDLNPEGAKD 793 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGG 866 L + + + ++ + E K + ++++++ NA + R K + G Sbjct: 794 LAYELGG----SYNNLFVVFATAHEGKPMLTCYISKEIVASKNLNAGQVVRELGKYI-QG 848 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GGGG+P A +GG N + +A+A F+K Sbjct: 849 GGGGQPFFATAGGKNVDGIGEALAKAVDFVK 879 >gi|116617672|ref|YP_818043.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272127|sp|Q03YQ2|SYA_LEUMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116096519|gb|ABJ61670.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 893 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 349/930 (37%), Positives = 513/930 (55%), Gaps = 74/930 (7%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++SS IR FL+FF GHE++PS +LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKDLSSAEIRQMFLDFFASKGHEVVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPNN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEM+GNFS G YFKE+AI AW+LLT Sbjct: 61 PRITNSQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEQAIPWAWELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +LY+TVY +D+EA K+W++ + L I + DNFW + E GP GP SEIF Sbjct: 117 WYGLDAEKLYVTVYPKDQEARKIWEEKTSLPDGHIYEV--EDNFWDIGE-GPSGPDSEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSID 225 FD+G P PG E ERY+EIWNLVF QF + + LP +ID Sbjct: 174 FDRGSSFQDLPDDDPEMYPGG--ENERYLEIWNLVFSQFNHLPGLTDNSQYPELPHKNID 231 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEG--NNIVN--HRVIVDHLR 280 TGMGLER+ +V Q N+D DLF +I+A+E+++ Y+ ++ VN +VI DH+R Sbjct: 232 TGMGLERVVSVFQNGRTNFDTDLFLPIIRATEKLSNQFTYDDSQDSEVNTSFKVIADHIR 291 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +F I DG LP+NEGRGYV+RR++RRA+ + + LG + +L+P + M S YPE+ Sbjct: 292 AITFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIKGQFLTNLVPIVGDIMESYYPEV 351 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLP 397 I++T+ +E++RF TL GL LL+ V+ G+ +I D AFKL DT+G P Sbjct: 352 KANTAKIQKTVAAEEKRFNATLTGGLSLLNDVIKEAKKTGQTQISGAD-AFKLSDTYGFP 410 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 L++ Q+ GL +D+ +N L+ QR RARA S + G Sbjct: 411 LELTQEQAEDAGLT-VDVDRYNDELQAQRVRARAAR-------------SNTKSMGVQNA 456 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 + DL SK++ + + + + V A++ ++ V+V FD Sbjct: 457 VLTDLRVDSKYVGWSQTEVNHAEIVAIIGEDEQGVDALLDNADV------DATVQVAFDV 510 Query: 518 TPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 TPFYAE GGQ+ D G + GD I +TDVQ G +H V + + L Sbjct: 511 TPFYAEMGGQVPDFGDVLNTNGDVI-AHVTDVQTAPNGQHIHTVDVISSFTLGD-KVDLK 568 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D +S NH+ATH+L +L +LG V Q GS + P+ LRFD + P++S +L Sbjct: 569 VDMARHIAVSKNHTATHMLDQSLRNVLGGDVHQAGSLVEPEYLRFDFNNEGPVSSEDLDK 628 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE +N IA+NLPV + E A GA A+ G KY D+VRVVS+ G + Sbjct: 629 IESMMNQEIAKNLPVTWLETDIESAKKLGAVAVFGEKYGDQVRVVSI-----GDFNKEFD 683 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ- 753 GGTH +ST E+ L IVSES I AG+RRIEA+TG +A S Q++ LK +A+ LK + Sbjct: 684 GGTHANSTAELGLFKIVSESGIGAGVRRIEAVTGLQALSQYKAQEKALKEIATALKAQKL 743 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSK-- 807 + +V ++ + R +Q HA+ L+ + + + +I + VN ++I +++ Sbjct: 744 TDAPEKVYDLQADLRTVQR-HAE-SLEAKLANATAGEIFNDVKTVNGHTYITAQLQVSGM 801 Query: 808 -ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866 L+ V D ++ S +++L ++ EK + ++ + A +L + A + GG Sbjct: 802 DGLRQVADNWKENYPSDVLVLATVADEKVSLIVAAAPDANQSGIKAGELIKSIAPHI-GG 860 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGGGRP MAQ+GG A A V++FL Sbjct: 861 GGGGRPDMAQAGGKKPAGIPDAFAAVSAFL 890 >gi|325679252|ref|ZP_08158839.1| alanine--tRNA ligase [Ruminococcus albus 8] gi|324109038|gb|EGC03267.1| alanine--tRNA ligase [Ruminococcus albus 8] Length = 885 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 308/893 (34%), Positives = 478/893 (53%), Gaps = 50/893 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++++ +R ++L+FF+ G S L+P ND +L+ +GM P K FTGQE P + Sbjct: 4 TSLNDLRESYLKFFESKGCLRHKSYPLVPQNDKSLLLIVAGMAPLKPYFTGQEVPPRVRM 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T RH T+FEMLGNFSFG YFK+ AI AW+ +T L Sbjct: 64 TTCQKCIRTG----DIENVGKTARHGTYFEMLGNFSFGDYFKKEAIAWAWEYVTDVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+++VY++D+EA K+W + G+ D I+R+ DNFW GPCGPCSEI+FD+GE Sbjct: 120 LDRLHVSVYEDDDEAEKIWHEEIGVPMDHIVRMGKEDNFWEAGTDGPCGPCSEIYFDRGE 179 Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P G + +RY+E WNLVF QFE+ L + +IDTGMGLER+A ++Q Sbjct: 180 KYGCGKPTCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAALMQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +D+D K + ++ G +Y E V+ RVI DH+R+ +FL +DG+LP+NEGR Sbjct: 240 VDSIFDVDTVKAIRDHICKIAGCEYGKEYKKDVSIRVITDHIRAVTFLASDGVLPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA+ + +LLG + L+ + Y EL + I + L +E++ Sbjct: 300 GYVMRRLLRRAVRHGKLLGINGLFLKDLVKTVVDCNKCEYNELEEKFDYIVKVLTTEEQN 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F T+DRG+ +LD + L + L+G+ FKL DT+G PLD+ ++IL +GL D Sbjct: 360 FNSTIDRGMKILDEYIEKLQAEGKTTLDGESCFKLSDTYGFPLDLTREILEEKGLTA-DE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + +E+QR AR G E+ F +K +T+F GYD ED Sbjct: 419 EGYAVCMEKQRETARGARESQGYMGAEETVFHKIDKNVSTKFTGYD-------KTED--- 468 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + ++ + +++E A V +V DQT FYAE+GGQ GDTG Sbjct: 469 -------------TGVISYLANDEDLIENAGVEDVVYIVPDQTCFYAESGGQAGDTGVIE 515 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + ++ D QK G F V G L ++ +D R NHS HLL Sbjct: 516 TATGKAEVLDTQKAVGGKFALKVKVTEGALTKGQAVTFKVDKAKRLATMRNHSCAHLLQS 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL T+LG HV Q G + LRFD +H + +T+ E +E VN I L + M Sbjct: 576 ALRTVLGEHVHQAGQLVDSQRLRFDFSHFEAMTADEKAQVEALVNKYIFDALDITMEEMP 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A GA AL G KY + VRVV++ + S CGGTH+ +T +I L I+SE+S Sbjct: 636 IAEAQKLGAMALFGEKYGETVRVVTMG-DRANAASIEFCGGTHLDNTSKIGLFKIISENS 694 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIH 774 + +G+RR+EA+TG L E + A LK++ +V R + +E + L+ Sbjct: 695 VASGVRRVEAVTGTGVLELLNSNIETINKAAETLKLNNPAELVSRCGAVMQEIKGLE--K 752 Query: 775 AKRKLQLNVEDLSCHKIAD-------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + L+ + ++ + + V+ + ++ V L+ + D L+ + I+++ Sbjct: 753 ERDSLETAMANMRAKSVLENAVDVKGVSVATAQLNGVKPDVLRKMADELKAANDNVIVVM 812 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSG 878 ++ + K ++++ +D + + +++ K+ L G GGGRP A +G Sbjct: 813 TTVNGD-KGNIVVAAGKDAVAK--GAHAGKIAGKIAALTNGKGGGRPDSAMAG 862 >gi|308805977|ref|XP_003080300.1| COG0013: Alanyl-tRNA synthetase (ISS) [Ostreococcus tauri] gi|122158402|sp|Q015G2|SYAP_OSTTA RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116058760|emb|CAL54467.1| COG0013: Alanyl-tRNA synthetase (ISS) [Ostreococcus tauri] Length = 945 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 322/848 (37%), Positives = 468/848 (55%), Gaps = 68/848 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FLEF++ GH PS+SL+P DPT++ T +GM+ FK +F GQ + TT QK Sbjct: 67 IRRRFLEFYEARGHSRQPSASLVP-EDPTVLLTIAGMLQFKPVFMGQREREMPRATTTQK 125 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR ND++NVG T RHHTFFEMLGNFSFG YFK A + AW+L T EF L+ R++ Sbjct: 126 CVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKREACEWAWELATNEFGLNPERVW 181 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP-- 184 ++V+ ED+EAF +W+ + G+ +I R+ DNFW+ TGPCGPCSE+++D P Sbjct: 182 VSVFREDDEAFAIWRDVVGVPESRIKRMDEKDNFWAAGPTGPCGPCSELYYD---FHPER 238 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G ++ R+IE +NLVFM+ + L +IDTGMGLERMA +LQ +NNY Sbjct: 239 GLDGADLDDDSRFIEFYNLVFMELNRDADGGIKPLKNKNIDTGMGLERMAQILQGVSNNY 298 Query: 245 DIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYVL 301 + DL + +I + + G+ Y + +VI DH R+ +++I+DG+ +N GRGY++ Sbjct: 299 ETDLIRPIIDKAASMAGLDYASCSATQKQQLKVIGDHTRAVTYMISDGVFASNIGRGYIV 358 Query: 302 RRIMRRAMCYARLLGYTE--------PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 RR++RR + RLLG P + + ++ E P++++ I L Sbjct: 359 RRLLRRVVRNGRLLGIKPADGQSAFTPSIAEVAISMSEECD---PQVVKNTARILAELER 415 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ F KTL RG +L ++ KD L+G AF LYDT+G PLDI D+ G+A Sbjct: 416 EELSFQKTLGRGEEMLAELIEK-AKDSKSGLSGKDAFTLYDTYGFPLDITTDVASEAGIA 474 Query: 412 GIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGA-TQFIGYDLLRGSKF 468 +D+ F +A+ EQRS ++A ++ + +G + ++ GA ++FIGYD Sbjct: 475 -VDLEGFEKAMAEQRSMSQAAHQTVDVTAGNA---LAQVADELGAMSEFIGYD------- 523 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 ++++ VS+++ AIV GE VEEA G +V+VV D TPFYAE+GGQ+ Sbjct: 524 --------------NISSDVSNVL-AIVSGGESVEEASGGARVDVVLDVTPFYAESGGQV 568 Query: 529 GDTG-CAIGDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 GD G DG L++TDVQK G I VH A V +G ++ + +D RR+ N Sbjct: 569 GDNGFLHSADGAVLKVTDVQKAGGGRIIVHSATVVKGSIKKGSQVSANVDENARRRARNN 628 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLL AL +LG VSQ GS D LRFD K +T A+L +E VN I+Q+ Sbjct: 629 HTATHLLQSALKKVLGDDVSQAGSLCGFDRLRFDFNCPKAVTEAQLLEVETLVNGWISQS 688 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 + M A GA + G KY D VRVV V G+ S LCGGTHVS+T EI Sbjct: 689 ADLTAEEMPIAAAKEKGATMMFGEKYGDVVRVVDVP----GI-SMELCGGTHVSNTAEIG 743 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 I+SE+ I +GIRRIEA+ G L +D +K LAS L+V + RV + ++ Sbjct: 744 GFKIISEAGIASGIRRIEAVAGAGVVELLQQRDAVVKQLASTLRVPPEEIASRVSGMQKD 803 Query: 767 YRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 Q + + +L V + + + + + VD LK + L ++ Sbjct: 804 LVAAQKLAESLRGELAVAKANALVSEARAVGESKVLVARLDGVDPGALKVAAENLATQLG 863 Query: 822 SGIIMLVG 829 G +++G Sbjct: 864 DGAAVILG 871 >gi|169629935|ref|YP_001703584.1| alanyl-tRNA synthetase [Mycobacterium abscessus ATCC 19977] gi|169241902|emb|CAM62930.1| Alanyl-tRNA synthetase [Mycobacterium abscessus] Length = 891 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 333/928 (35%), Positives = 495/928 (53%), Gaps = 79/928 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y T+VQK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYNTATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT + D Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIRLAWTLLTNPVSEGGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+ TVY +D+EA LW++++GL D+I R DN+WSM GPCGPCSEI++D+G Sbjct: 121 PEKLWATVYLDDDEAIGLWQEVAGLPLDRIQRRGMADNYWSMGIPGPCGPCSEIYYDRGP 180 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E+ + LP+ +IDTGMG+ER+A Sbjct: 181 EY--GIEGGPEANEDRYIEIWNLVFMQNERGEGTSKTDFEILGPLPRQNIDTGMGVERIA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGN--NIVNHRVIVDHLRSSSFLIADGIL 291 +LQ N Y+ DL + +I V Y +GN + V +RVI DH R+++ +I DG+ Sbjct: 239 CLLQGVDNVYETDLVRPVIDCVAAVAPRGYGQGNHEDDVRYRVIGDHARTAAIIIGDGVS 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRR++RR + +LLG +P+M L+ + EMG +YPEL+ I Sbjct: 299 PGNEGRGYVLRRLLRRIIRSTKLLGVEKPMMGELMAVVRDEMGPSYPELVTDFERISRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L + + L+G AF L+DT+G P+++ ++ G Sbjct: 359 VAEETAFNRTLASGSKLFEDAADKTKTAGKSTLSGSDAFTLHDTYGFPIELTLEMAAEAG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L+ +D F + + EQR RA+A + + + G T+F G+D L + Sbjct: 419 LS-VDEKGFRELMNEQRQRAKADAAARKHAHADLSAYRELVDAGPTEFTGFDELDSA--- 474 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + + I G V A +G + E+V D+TP YAE+GGQ+ Sbjct: 475 --------------------ARILGIFVDGARVPVASAGSEAEIVLDRTPLYAESGGQIA 514 Query: 530 DTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D G GDG + +++DVQK A+ +FVH VE G +V ++D R + Sbjct: 515 DVGSIRGDGANATSQAKVSDVQKIAKTLFVHKVTVESGEFVEGDQVVASVDPHWRHGATQ 574 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG + Q GS P LRFD + ++ A+ + +ED N + Sbjct: 575 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFSWQGALSEAQRQEVEDVANKAVEA 634 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N PV T + + + A + GA AL G Y DRVRVV + GG S LCGGTHV+ + +I Sbjct: 635 NYPVNTFVTDLDQAKSMGAMALFGENYGDRVRVVDI----GGPFSLELCGGTHVAHSSQI 690 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + ++ ESS+ +G+RR+EA G A +L + + +L+S LKV V GRV + E Sbjct: 691 GPVTLLGESSVGSGVRRVEAYVGLDAVRYLSKERALMAALSSSLKVPSEEVPGRVATLVE 750 Query: 766 -------EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817 E + +L K + V++ +I V ++H + + + +L+S++ ++ Sbjct: 751 RLKVAEKELEQTRLASVKASIATLVDN--AERIGSVTVVAHRLPDGTGAGDLRSLVGDIR 808 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG-------GGGGG 870 ++ S +V + + SV VV+ + A A L A L G G GGG Sbjct: 809 GRLGSD-PAVVALIAAGEGSVPFVVSVN-----QAAQDAGLRANDLVGAIGPAVDGRGGG 862 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898 + AQ G + D A+ + + +++ Sbjct: 863 KADTAQGSGKDPAGIDAALQALRAQIRR 890 >gi|239917773|ref|YP_002957331.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665] gi|281413733|ref|ZP_06245475.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665] gi|239838980|gb|ACS30777.1| alanyl-tRNA synthetase [Micrococcus luteus NCTC 2665] Length = 903 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 321/874 (36%), Positives = 470/874 (53%), Gaps = 71/874 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I + FF+ GH ++PS+SL+ DP+L+FT +GMVPF F G++ P V +VQK Sbjct: 6 IARRWTAFFESRGHRVVPSASLV-SPDPSLLFTVAGMVPFIPYFLGEQTPPSPRVVSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D++ VG+T RH TFF+M GNFSFG YFKE AI +AW+LLT F LD Sbjct: 65 CIRTA----DIEEVGKTVRHGTFFQMCGNFSFGDYFKETAIPMAWELLTSSVEDGGFGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY ED+EA ++W++ G+ ++I R+ +DN+W+ + GP GPCSEIF+D+G Sbjct: 121 PERLWVTVYREDDEAERIWREDVGVRPERIQRMGKDDNYWNTGQPGPGGPCSEIFYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFI---LPKMSIDTGMGLERMAT 235 G G + + RYIEIWNLVFMQ+ ++K + I L +IDTG+GLER+A Sbjct: 181 AY-GVDGGPAADDTRYIEIWNLVFMQYRLSAVRSKDDFDIAGELEHKNIDTGLGLERLAM 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFLI 286 +LQ N Y+ D + ++ + Q+ G Y ++ V R++ DH+RS+ LI Sbjct: 240 ILQGVENMYETDQVRPVLDRAAQLAGRAYTSTEDPADPHYDDDVRLRMVADHVRSALMLI 299 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 +DG+ P NEGRGYVLRR++RR + RL+G TEP+ LLP M YP + Sbjct: 300 SDGVRPGNEGRGYVLRRLIRRVVRALRLMGVTEPVFPELLPVSRDAMKGTYPVVADEFER 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 I +E++ F +T+ G LD + + G AF+L+DT+G P+++ +I Sbjct: 360 ISRIAYAEEKAFLRTIAAGTARLDAAVGQARSAGGGIAGPDAFELHDTYGFPIELTLEIA 419 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+A +D F + EQR RARA + SG T+ + G T F GY Sbjct: 420 EEAGVA-VDEAGFRALMAEQRDRARADAKAKKSGHTDTAVYQRLRAEGQTHFTGY----- 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + S+V+ ++Q GE V A +G ++E+V D TPFYAE+G Sbjct: 474 ------------------TEHTTESVVRGLLQNGEEVPSAGAGTELELVLDATPFYAESG 515 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ DTG GDG RL++ DVQ +G+ VH V G + + ID Q R Sbjct: 516 GQAADTGLITGDGFRLEVLDVQAPVKGLSVHRVKVLDGEVAAGAQALGAIDLQRRLDGEK 575 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS THL+H AL ILG +Q+GS LRFD ++ +++ +ED VN I Sbjct: 576 AHSGTHLVHAALHQILGPEATQSGSFNKEGYLRFDFRWAEALSAGARSEVEDVVNIAIRD 635 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V+T+ M+ E+A A GA +L G KY DRVRVV ++ G S LCGGTHV T +I Sbjct: 636 DHTVLTQEMSLEEARALGAMSLFGEKYGDRVRVVEID----GAWSRELCGGTHVGRTAQI 691 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ-------DEKLKSLASFLKVSQGNVVG 758 L ++ E S+ +G RR+EA+ G + HL + E K+ A LK G + Sbjct: 692 GSLTLLGEQSVGSGNRRVEALVGLDSFRHLAAERTLVSELSEMFKAPAEELKDRIGATLD 751 Query: 759 RV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815 R+ E+ E R L +L +D++ V ++H +V +L+S+ Sbjct: 752 RLKAAEKQVAELRAQALQAQAGQLAGQAQDVTTSGGTSVRVLAHHAGDVAGDQLRSLALD 811 Query: 816 LQKKIQS------GIIMLVGISKEKKASVLIVVT 843 L+ +I+S G +LV ++ E K L+VV Sbjct: 812 LRARIESAGGNAAGTPVLVALTAEAKGRPLVVVA 845 >gi|229093459|ref|ZP_04224562.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-42] gi|228689930|gb|EEL43734.1| Alanyl-tRNA synthetase [Bacillus cereus Rock3-42] Length = 791 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 314/826 (38%), Positives = 482/826 (58%), Gaps = 59/826 (7%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 MLGNFS G YFKE AI AW+ LT K D+ L +T++ EDEEAF +W + G+ + Sbjct: 1 MLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDKELLSVTIHPEDEEAFTIWNEKMGVPKE 60 Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI------PGGLPGSSEEGERYIEIWNL 203 +IIR+ +NFW + E GP GP +EIF+D+GE P PG E ERY+E+WNL Sbjct: 61 RIIRL--EENFWDIGE-GPSGPNTEIFYDRGEAYGNDFSDPELYPGG--ENERYLEVWNL 115 Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263 VF QF LPK +IDTGMGLERM +++Q+ N+D DLF +I A+E ++G K Sbjct: 116 VFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSIVQDVPTNFDTDLFMPMIGATETISGEK 175 Query: 264 YEGNNI---VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP 320 Y ++ + +VI DH+R+ +F + DG LP+NEGRGYVLRR++RRA+ Y++ L P Sbjct: 176 YRNGDLEKDMAFKVIADHIRTVTFAVGDGALPSNEGRGYVLRRLLRRAVRYSKKLNINRP 235 Query: 321 LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE 380 M L+P + M YPE+++ K I + +++E+ERF +TL G +L V++ +++ Sbjct: 236 FMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKNEEERFHETLHDGEAILAEVIAKAKEEK 295 Query: 381 --ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS 438 +++G AF+LYDT+G P+++ ++ G+ +D F +E+QR RARA + S Sbjct: 296 TTVISGVDAFRLYDTYGFPIELTEEYAEEAGMT-VDHEGFENEMEKQRERARAARQDVDS 354 Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498 + L E A++F+GY T S V A+V+ Sbjct: 355 MQVQG--GVLGEVKVASEFVGYG-----------------------TVATESNVVALVKN 389 Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA 558 GE + G++ +++ D TPFYAE+GGQ+ D G + DG+++ + DVQK G +H Sbjct: 390 GEYTDSLQVGEEGQLMLDVTPFYAESGGQIADRGYLLADGVKVLVKDVQKAPNGQNLHQV 449 Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 +VE G L+ + ++ ID +NR + NH+ATHLLH AL +LG+HV+Q GS +T + LR Sbjct: 450 VVEEGTLKKDAAVKAIIDTKNRSSVVKNHTATHLLHQALKDVLGTHVNQAGSLVTSERLR 509 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678 FD +H + + EL+ IE VN+ I +++ V E+A GA AL G KY D VRV Sbjct: 510 FDFSHFGQVQADELEKIERIVNEKIWESIDVEISQKAIEEAKEMGAMALFGEKYGDVVRV 569 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 V V G +S LCGG HV +T I + IV+ES I AG RRIEA+TG+ A + Q Sbjct: 570 VQV-----GDYSLELCGGCHVDNTASIGIFKIVAESGIGAGTRRIEAVTGKSAYELMNDQ 624 Query: 739 DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQL------NVEDLSCHKIA 792 LK A +K + +++ RV+ ++ E ++LQ + +L N+ D S + Sbjct: 625 VGLLKEAAGKMKTNPKDILTRVDGLFAEVKQLQKENESLAAKLSNIEAGNLTD-SVMTVD 683 Query: 793 DVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FN 851 VN ++ ++ D L+++MD L+ K++S +++L ++ + K ++L VT+DL+ + ++ Sbjct: 684 GVNVLAAKVNVADMNNLRTMMDDLKNKLESAVVVLASVN-DDKVNILAGVTKDLISQGYH 742 Query: 852 AVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 A L + A GGGGGGRP MAQ+GG N + ++A+A V ++K Sbjct: 743 AGKLVKEVASRC-GGGGGGRPDMAQAGGKNPAQVEEALAFVQEYVK 787 >gi|305681135|ref|ZP_07403942.1| alanine--tRNA ligase [Corynebacterium matruchotii ATCC 14266] gi|305659340|gb|EFM48840.1| alanine--tRNA ligase [Corynebacterium matruchotii ATCC 14266] Length = 889 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 326/903 (36%), Positives = 489/903 (54%), Gaps = 65/903 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F F K GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 6 IRERFTHHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFPNGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT D Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTSPIDEGGYG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D ++++TVY +D+EA +W+ + G+ A++I R+ DNFWSM GPCGP SEI++D+ Sbjct: 121 FDPEKIWVTVYLDDDEAANIWENVVGIPAERIQRLGMADNFWSMGIPGPCGPSSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233 G G G + + RY+EIWNLVFM+ E + N + LPK +IDTGMG+ER+ Sbjct: 181 GPEY-GNEGGPAADDSRYLEIWNLVFMEKERGAGTGKDNFEILGPLPKKNIDTGMGVERI 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ DL + +I ++++TG Y N + + RVI DH R++ +I DG+ Sbjct: 240 ACLLQGVDNVYETDLLRPVIDEAQRLTGATYGANHEDDIRFRVIADHSRTAMMIILDGVT 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + I+ Sbjct: 300 PGNEGRGYILRRLLRRIIRSARLLGATGKTMESFMNTIMDTMTPSYPEIADNRERIQRVA 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E+ F KTL+ G L + + + GK + D AF L+DT+G P+D+ ++ Sbjct: 360 ITEETAFLKTLESGTELFETTAAKIKQEGKTTVAGAD-AFALHDTYGFPIDLTLEMAAEA 418 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F++ + EQR+RA+A S G T+ + T+FIGYD L Sbjct: 419 GLQ-VDTEGFDKLMAEQRARAKADSQAKKHGHTDLSIYRDWVDNHPTEFIGYDELT---- 473 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S V ++ G+ V E +G VEV+ D + FYAEAGGQ+ Sbjct: 474 -------------------AQSHVIGLLSDGKKVSEVSAGHDVEVILDASTFYAEAGGQI 514 Query: 529 GDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GD G +GD + L++ DVQK + ++VH A VE G ++ +D R H Sbjct: 515 GDRGTMTLGDSL-LRVNDVQKIGKKLWVHRATVETGGFALGDTVTAAVDPAWRHAARQAH 573 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+H AL +LG Q GS P LRFD +++ +T +L+ IE N + + Sbjct: 574 SATHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPEQLEHIELITNQAVDADW 633 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T ++A GA AL G Y + VRVV + GG S LCGGTHV+ + +I Sbjct: 634 QVNTIETTLDEAKTMGAMALFGENYGNIVRVVEI----GGPFSMELCGGTHVAHSSQIGP 689 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + I+ ESSI +G RRIEA +G + +L + + LAS LK V R+ ++ + Sbjct: 690 VSILGESSIGSGARRIEAYSGLDSFKYLSKERTLVAGLASALKAPSAEVPDRIAQLTTKL 749 Query: 768 RKLQ-LIHAKRKLQLNVED----LSCHKIADVNFMSHIISE-VDSKELKSVMDALQKKI- 820 ++ + I RK +L + H + S ++ + + +L+++ ++ + Sbjct: 750 KEAEKTIENLRKAELLAQGSRLVARAHLPNGITVASAVLPDGTTAGDLRTLAADVKNHLA 809 Query: 821 -QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 ++G+++L + + K ++ T++ + R NA + + + G GGG+P MAQ Sbjct: 810 GEAGVVLLASSTSDGKVPFVVAATKEAIARGANAGTIVKTLNPYI-DGRGGGKPDMAQGS 868 Query: 879 GPN 881 G N Sbjct: 869 GSN 871 >gi|306818740|ref|ZP_07452462.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35239] gi|307700826|ref|ZP_07637851.1| alanine--tRNA ligase [Mobiluncus mulieris FB024-16] gi|304648426|gb|EFM45729.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35239] gi|307613821|gb|EFN93065.1| alanine--tRNA ligase [Mobiluncus mulieris FB024-16] Length = 894 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 308/880 (35%), Positives = 472/880 (53%), Gaps = 58/880 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L++F NGHE+ PS SLI DP+++FT +GMVPF G E + T+ Sbjct: 3 TAEIRQRWLDYFAANGHEVRPSVSLI-SPDPSILFTIAGMVPFIPYIVGTETAPWPRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-----EF 118 VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT ++ Sbjct: 62 VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEGKY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD ++++T+++ED+EA+++W K GL I ++ + FW + GP G C+EI +D Sbjct: 118 GLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIHYD 177 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232 +G + P G P +G+R++E+WNLVF +F E + K + L + +IDTG+GLER Sbjct: 178 RGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 +A +LQ+K N Y+ID +IQ +++++G KY + V+ RV+ DH+RS+ LI DG Sbjct: 238 LAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIGDG 297 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+NEGRGYVLRR+MRRA+ RLLG E +M LLPA M +YPEL I + Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTISD 357 Query: 350 TLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E++ F +TLD G V+LD V L+G+ AF+L+DT+G PL + +I A Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEI-AAE 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDLLR 464 +D F + + EQ+ RARA ++ +G + ++ L EK G T +F+GY Sbjct: 417 AKVKVDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGY---- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q G+ V A + +EV+ D+TPFYAEA Sbjct: 473 -------------------TETSAPAKVIGILQDGKPVPAASAPATIEVLLDRTPFYAEA 513 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + G + DVQ +G+ +H + G + TID + R + Sbjct: 514 GGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRGAI 573 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H++TH++H L LG +Q GS P +RFD +SKP+++ L+ +E N+ + Sbjct: 574 ARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANERL 633 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 NL V+ M E+A +GA A+ G KY VR+V + G S CGGTHV TG Sbjct: 634 RANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSKEFCGGTHVPLTG 689 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I L ++SE S+ +G+RRIEA+ G A + + + + + ++V R+ + Sbjct: 690 AIGSLMVLSEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERITSM 749 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E + + K +L + +L S I F+ +S +L+ L+ Sbjct: 750 MERLKAAEKELEKTRLAALLSNLDNYVASAQNICGTKFICQSVSAGSVDDLRQAATQLRG 809 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 + ++V + + K ++VV + R V L Sbjct: 810 RFSKTESVVVALGAKIKEKPMMVVATNEAAREKGVKAGAL 849 >gi|269977319|ref|ZP_06184292.1| alanyl-tRNA synthetase [Mobiluncus mulieris 28-1] gi|269934622|gb|EEZ91183.1| alanyl-tRNA synthetase [Mobiluncus mulieris 28-1] Length = 894 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 308/880 (35%), Positives = 472/880 (53%), Gaps = 58/880 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L++F NGHE+ PS SLI DP+++FT +GMVPF G E + T+ Sbjct: 3 TAEIRQRWLDYFAANGHEVRPSVSLI-SPDPSILFTIAGMVPFIPYIVGTETAPWPRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-----EF 118 VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT ++ Sbjct: 62 VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEGKY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD ++++T+++ED+EA+++W K GL I ++ + FW + GP G C+EI +D Sbjct: 118 GLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIHYD 177 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232 +G + P G P +G+R++E+WNLVF +F E + K + L + +IDTG+GLER Sbjct: 178 RGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 +A +LQ+K N Y+ID +IQ +++++G KY + V+ RV+ DH+RS+ LI DG Sbjct: 238 LAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIGDG 297 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+NEGRGYVLRR+MRRA+ RLLG E +M LLPA M +YPEL I + Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTISD 357 Query: 350 TLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E++ F +TLD G V+LD V L+G+ AF+L+DT+G PL + +I A Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEI-AAE 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDLLR 464 +D F + + EQ+ RARA ++ +G + ++ L EK G T +F+GY Sbjct: 417 AKVKVDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGY---- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q G+ V A + +EV+ D+TPFYAEA Sbjct: 473 -------------------TETSAPAKVIGILQDGKPVPAASAPATIEVLLDRTPFYAEA 513 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + G + DVQ +G+ +H + G + TID + R + Sbjct: 514 GGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRGAI 573 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H++TH++H L LG +Q GS P +RFD +SKP+++ L+ +E N+ + Sbjct: 574 ARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANERL 633 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 NL V+ M E+A +GA A+ G KY VR+V + G S CGGTHV TG Sbjct: 634 RANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSKEFCGGTHVPLTG 689 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I L ++SE S+ +G+RRIEA+ G A + + + + + ++V R+ + Sbjct: 690 AIGSLMVLSEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERITSM 749 Query: 764 WEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E + + K +L + +L S I F+ +S +L+ L+ Sbjct: 750 MERLKAAEKELEKTRLAALLSNLDNYVASAQNICGTKFICQSVSAGSVDDLRQAATQLRG 809 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 + ++V + + K ++VV + R V L Sbjct: 810 RFSKTESVVVALGAKIKEKPMMVVATNEAAREKGVKAGAL 849 >gi|164660846|ref|XP_001731546.1| hypothetical protein MGL_1729 [Malassezia globosa CBS 7966] gi|159105446|gb|EDP44332.1| hypothetical protein MGL_1729 [Malassezia globosa CBS 7966] Length = 963 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 335/977 (34%), Positives = 511/977 (52%), Gaps = 116/977 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57 + +R+TFL+FF++ H +PSSS +P +DPTL+F N+GM +K+IF G P + Sbjct: 14 AAKVRSTFLDFFREKEHTFVPSSSTVPYDDPTLLFANAGMNQYKSIFLGTVDPSSEFSKL 73 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 +AV + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW LLT+ Sbjct: 74 RRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAISFAWKLLTEV 132 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L RLY+T ++ D E ++W+K+ G+ ++I++ DNFW M TGPC Sbjct: 133 YGLPSDRLYVTYFEGDPKQGLEPDVETLEIWRKV-GVPDERILKGNAKDNFWEMGATGPC 191 Query: 170 GPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI FD+ GG +S + IE+WN VF+QF ++ LP IDT Sbjct: 192 GPCSEIHFDR----VGGRNAASLVNMDDPDVIEVWNNVFIQFNREEDGSLRPLPARHIDT 247 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMG ER+ ++LQ+K +NYD D+F L +++TG + + +RV+ D Sbjct: 248 GMGFERLVSILQDKRSNYDTDVFMPLFSRIQELTGARPYSGKLGAEDVDGLDTAYRVVAD 307 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMG 334 H+R+ +F I+DG +P +GRGYVLRRI+RR + R + P+ L+P L +MG Sbjct: 308 HIRTLTFAISDGCIPDKDGRGYVLRRILRRGTRFVRKY-FQVPIGAFFSQLVPTLVEQMG 366 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLY 391 S +PE+ + ++ L E++ F +TLDRG L + + G+ ++ DV ++LY Sbjct: 367 SFFPEITRKTKELQAILNEEEQSFARTLDRGEKLFEQYANAARTEGRTKLSGADV-WRLY 425 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 DT+G P+D+ + +GL +F+QA E ++++A + G G ++ Sbjct: 426 DTYGFPVDLTSIMAEEQGL------TFDQA-EFEKAQAESKEASKGQGKQQEAL------ 472 Query: 452 YGATQFIGYDL--LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE----A 505 A + +DL L + + V P + + VKAI Q+ + V + A Sbjct: 473 --AVKLDVHDLGHLDADASVPQTNDVFKYDTP-----SMQAHVKAIFQEHKFVSDSNSLA 525 Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGI 564 +G+ ++ DQT YAE+GGQ DTG + DG +++DVQ + G +H ++ G Sbjct: 526 KAGEPFGILLDQTNMYAESGGQQADTGSLVIDGKAEFEVSDVQ-ASNGYVLHIGFLKYGK 584 Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624 L +V++ D RR L NH+ TH+L+ L ILG HV Q GS + P LRFD +H Sbjct: 585 LSVGDQVVVSYDESRRRPLQNNHTGTHILNFGLREILGDHVDQKGSLVAPSKLRFDFSHK 644 Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY 683 P+ +EL+ IED N I +++ V + M E+A G A+ G Y + VRVV++E+ Sbjct: 645 APVNVSELQKIEDISNSFIERDVSVYAKDMVLEEAYKIPGLRAVFGESYPNPVRVVALEF 704 Query: 684 EDGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 + + S CGGTHV TGEI L + ES I GIRRI A+TG A Sbjct: 705 DIDQMAKDLTNPRWRQTSIEFCGGTHVKKTGEIGRLVVTEESGIAKGIRRIVAVTGDEAV 764 Query: 733 SHLMGQDEKLKSLASFLKVSQGNV------------------VGRVEEIWEEYRKLQ--- 771 + DE K L +VS V R +E+ + K++ Sbjct: 765 AVTATADEASKRLDEIDQVSDDVAKEAQLKAFSVELARMDISVVRKDELKARFTKIRKAL 824 Query: 772 --LIHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGI 824 + A+ + V + + N +++ + + +SK L+S + A+ +K+ + Sbjct: 825 DTRLKARAAADVKVAQEAVQTYFNENPDARVYIAQLDTGANSKALQSGV-AVARKLNKSV 883 Query: 825 IMLVGISKEKKASVLI--VVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + S +K L V +D L+R +AV + ++ L G GGG+P AQ G Sbjct: 884 YLFARESGSEKTKTLYGNFVPKDELERGLDAVSWNKAVSEKL-QGRGGGKPDGAQGQG-E 941 Query: 882 GNKA--DQAIAGVASFL 896 G KA D+AI SF Sbjct: 942 GTKADVDEAIKLAQSFF 958 >gi|172040632|ref|YP_001800346.1| alanyl-tRNA synthetase [Corynebacterium urealyticum DSM 7109] gi|205830039|sp|B1VDL4|SYA_CORU7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|171851936|emb|CAQ04912.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 888 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 331/914 (36%), Positives = 497/914 (54%), Gaps = 68/914 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F + F K+GH +PS+SLI +DP L+F N+GMVPFK F GQE P + T++QK Sbjct: 6 IRQRFTDHFVKSGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQETPPFGTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 CVR D+D VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT D L+ Sbjct: 65 CVRT----LDIDEVGITTRHNTFFQMAGNFSFGQYFKEGAIKNAWTLLTNSVDDGGLGLN 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY++D+EA +LW + GL ++I R+ DN+W M GPCGPCSEI++D+G Sbjct: 121 PDRLWVTVYEDDDEAAQLWHDLVGLPTERIQRLGMEDNYWHMGVPGPCGPCSEIYYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQ-QNKQERFI-----LPKMSIDTGMGLERMAT 235 G G + + R+IEIWNLVFM+FE+ + K + LPK +IDTGMG+ER+A Sbjct: 181 AY-GEDGGPAVDDSRFIEIWNLVFMEFERGETKPDGSFDIVGNLPKKNIDTGMGVERLAF 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 +LQ N Y+ DL + +I +E++TG +Y + + + RVI DH R++ LI DG+ P Sbjct: 240 LLQGVDNVYETDLLRPVIDTAEKLTGTRYGTQDKDDIRFRVIADHSRTALMLILDGVTPG 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGY+LRR++RR + ARLLG ++ LL + M +YPE+ + I + Sbjct: 300 NEGRGYILRRLIRRIIRSARLLGAQGAVIEQLLGTVREAMTPSYPEIEENWERIRSVGVT 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E++ F KTL+ G L + L+ ++ G VAF L+DTHG P+D+ +++ L Sbjct: 360 EEKAFLKTLESGSQLFEQFLTEARNSGTSVVPGAVAFSLHDTHGFPIDLTREMAEEASLT 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F++ + EQ++RA+A S + + T F GY+ + Sbjct: 420 -VDEAGFHELMAEQKARAKADSAAKKHVHADLSVYRAFIDSHPTHFTGYE------NTAD 472 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 + KVL ++ G++ + A +GQ +V+ DQTPFYAE+GGQ+ D Sbjct: 473 EGKVL-----------------GLIVDGQLADRASAGQHAQVILDQTPFYAESGGQMADR 515 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATH 591 G G G ++ DVQK A+ ++ H V G L L +D + R Q HS TH Sbjct: 516 GSLRGPGGLAKVVDVQKIAKKVWAHLIEVTEGELAIGELLEARVDQKWRHQARQAHSGTH 575 Query: 592 LLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT 651 L+H AL +LG Q GS P LRFD ++ +T +L+ IE+ N + + V T Sbjct: 576 LIHAALREVLGPTAVQAGSMNKPGYLRFDFSYGDQLTEKQLQQIEEIANSAVDTDYQVNT 635 Query: 652 RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + E+A A GA AL G Y +VRVV + GG S LCGG HV + +I + ++ Sbjct: 636 IETSLEEAKAMGAMALFGENYGKQVRVVEI----GGPFSMELCGGIHVDHSSQIGPISVL 691 Query: 712 SESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 ESS+ +G+RRIEA TG + HL + +LA+ K + + R++ + + + + Sbjct: 692 GESSVGSGVRRIEAYTGMDSFRHLAADRSLVANLAANFKATSEEIPERIDALTAKLKAAE 751 Query: 772 LIHAKRKLQLNVEDL---------SCHKIADVNFMSHIISE-VDSKELKSV-MDALQK-K 819 K+ QL + L S ++ V ++ + E + +KEL+SV DA+ + Sbjct: 752 ----KQVQQLRAQQLAAQVGSIVDSAADVSGVKVLTQNLGEGLGAKELRSVAQDAIARFN 807 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSG 878 ++ +++ EK V + + A DL + A+V G GGG+P +AQ Sbjct: 808 SETAVVLFTSQDGEKVPFVAAANPQAVERGLKAGDLVKAFGAEVG--GRGGGKPALAQGS 865 Query: 879 GPNGNKADQAIAGV 892 G + + D +A V Sbjct: 866 GSDASGVDAGLAAV 879 >gi|124009945|ref|ZP_01694610.1| alanyl-tRNA synthetase [Microscilla marina ATCC 23134] gi|123984029|gb|EAY24407.1| alanyl-tRNA synthetase [Microscilla marina ATCC 23134] Length = 883 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 328/929 (35%), Positives = 504/929 (54%), Gaps = 89/929 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +IR FL+FF++ H+++ S+ L+ NDPTLMFTN+GM FK+ F G + + V Q Sbjct: 5 TIRQKFLDFFREKQHQIVDSAPLVVKNDPTLMFTNAGMNQFKDFFLGTKTAENRRVADTQ 64 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ F+L + RL Sbjct: 65 KCLRVSGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIAWAWELLTEVFELPKDRL 124 Query: 126 YITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 Y+TV+ + D+EAF +WKK ++ D+II + DNFW M ETGPCGPCSEI Sbjct: 125 YVTVFEGDKGDSLEPDQEAFDIWKKY--INEDRIIYASKEDNFWEMGETGPCGPCSEIHI 182 Query: 178 DQGECIP-GGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 D + PG +++ + +EIWNLVF+QF + + LP +DTGMG ER+ Sbjct: 183 DLRDANEIAKTPGKGLVNQDDPQVVEIWNLVFIQFNRMANKSLQNLPDKHVDTGMGFERL 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGIL 291 A +Q K +NYD D+F+ +IQ +V G +Y E + RVI DH+R+ SF I DG L Sbjct: 243 AMAIQGKKSNYDTDVFQPMIQYLAKVAGTQYGKEEKIDIALRVIADHIRAISFAITDGQL 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P N G GYV+RRI+RRA+ Y LG+ EP + L+P L + +PEL Q + + Sbjct: 303 PGNNGAGYVIRRILRRAVRYGYSYLGFNEPFLHTLVPMLSEQFAEVFPELKQQQAHVSNI 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLG---KDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + E++ F +TL GL LLD V++ + EI DV F L D +G P D+ + Sbjct: 363 IIQEEKSFLRTLANGLKLLDEVVAKTKEKQQKEIAGIDV-FTLSDRYGFPSDLTNLVASE 421 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL GID F + L++Q+ R++ + +G W L G ++FIGYD S Sbjct: 422 NGL-GIDEAGFKEELKKQKLRSQQDAQK-STGD----WIVLNS--GESEFIGYD--ETSS 471 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F K +++ EI E ++ E+V + TPFYAE+GGQ Sbjct: 472 FTK------------------------VLRYREI--EVKKKKQYEIVLETTPFYAESGGQ 505 Query: 528 LGDTGC----AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV---LTIDYQNR 580 +GDTG A + + + D KK + +H++ +++ V + Q R Sbjct: 506 VGDTGSLEFRAEAGTVTVPVIDT-KKENDLIIHYSPKNDFTKIADLAQVEVFAQVKEQRR 564 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 R NHSATHL+H AL +LG HV Q GS + LRFD +H+ +T E+ +E VN Sbjct: 565 RLTENNHSATHLVHSALRQVLGQHVEQRGSLVNDVILRFDFSHNAKMTDEEIAEVERIVN 624 Query: 641 DIIAQNLPV-VTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 + I +N+ + R + ++AI S GA L G KY D VRV++ + +S LCGG H Sbjct: 625 EKIRENIALDERRAVPYKEAIESLGATGLFGEKYGDTVRVITFDEN----YSRELCGGCH 680 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V STG I I++E+S+ +G+RRIEA+T +A ++ Q + + LK + ++ Sbjct: 681 VPSTGVIGFFKIITEASVASGVRRIEAVTATKAEEYVQNQVALVNQVKDLLK-NPKDLPK 739 Query: 759 RVEEIWEEYRKL---------QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809 +E + +E L Q + A ++ L+ + + +NF++ +S + L Sbjct: 740 AIESLIKEKTDLSKQIEVLENQQVQALKQGLLD----TVKQTNGINFIAQKVSLPSADAL 795 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGG 867 K++ ++K Q + M++ + K + ++++++L++ NA + + A+ + GG Sbjct: 796 KNLAFDVRKN-QDNLFMVLASDIKGKPQIAVMISDNLVEEKSLNAGKIVKELAREI-KGG 853 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGG+ A +GG + D+ + F+ Sbjct: 854 GGGQAFFATAGGKDATGLDKVVERAEEFV 882 >gi|284037267|ref|YP_003387197.1| alanyl-tRNA synthetase [Spirosoma linguale DSM 74] gi|283816560|gb|ADB38398.1| alanyl-tRNA synthetase [Spirosoma linguale DSM 74] Length = 890 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 348/927 (37%), Positives = 493/927 (53%), Gaps = 92/927 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FFQ H ++ S+ L+ NDPTLMF NSGM FK+ F G P + V QK Sbjct: 6 IRRHFLDFFQSKQHLIVASAPLVAKNDPTLMFNNSGMAQFKDFFLGNGTPPSKRVADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL++VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + L + RLY Sbjct: 66 CLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAITWAWELLTEVYKLPKDRLY 125 Query: 127 ITVYDED--------EEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++V+ D +EAF LWK I G D+II DNFW M +TGPCGPCSEI D Sbjct: 126 VSVFQGDAKDNVPFDQEAFDLWKPIVG--EDRIIYGNKKDNFWEMGDTGPCGPCSEIHVD 183 Query: 179 --QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 E I PG + + + +EIWNLVFMQF ++ LP +DTGMG ER+ Sbjct: 184 LRTPEEI-AEKPGKELVNADHPQVVEIWNLVFMQFNRKADGSLEALPARHVDTGMGFERL 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---GNNIVNHRVIVDHLRSSSFLIADGI 290 +Q K +NYD D+F I+ E+++G+ Y G V RVI DH+R+ SF IADG+ Sbjct: 243 CMAIQNKRSNYDTDVFTGTIKVIEEISGISYTAGTGMTDVAMRVISDHIRAVSFAIADGL 302 Query: 291 LPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 +P+N GYV+RRI+RRA+ Y L EP M L+P L + +PEL + + Sbjct: 303 VPSNAKAGYVIRRILRRAIRYGYSYLNLAEPFMTKLVPTLAMQFADVFPELTAQRDFVAT 362 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +R E+ F +TL GL LD ++ L GK EI G+ F+L DT G P D+ I Sbjct: 363 VIREEEISFLRTLGTGLGRLDQIIGQLTTDGKTEI-PGETVFELNDTFGFPADLTALIAR 421 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 + L ID F +AL+EQ++R+R + ++ W + E +F+GYD Sbjct: 422 EKRLT-IDEAGFQKALQEQKARSRKDA-----SSSAGDWIDVNET-DRVEFVGYDQPEAY 474 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + RK+ ++ G +V+VV D+TPFYAE+GG Sbjct: 475 AQIVKYRKIQNKQ----------------------------GTQVQVVLDKTPFYAESGG 506 Query: 527 QLGDTGC----AIGDGI-RLQITDVQKKAEGIFVHHAIVERGI--LRTEMSLVLTIDYQN 579 Q+GDTG + D I L + D KK + +H GI L TE V + Sbjct: 507 QIGDTGTLELFSGSDQIGTLTVLDT-KKENDLTIHIVQDVTGIDDLLTEADSVYAVINTT 565 Query: 580 RRQL-SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 RR L S NHSATHLLH AL +LG+HV Q GS + PD LRFD +H +T +L +E Sbjct: 566 RRGLTSSNHSATHLLHAALRDVLGTHVGQKGSYVGPDALRFDFSHFSKVTDEQLAEVERI 625 Query: 639 VNDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ I +++ + R + A GA AL G KY D VRV++ + +S LCGGT Sbjct: 626 VNEKIREDIKLDEKRNVPIGQAKELGATALFGEKYGDFVRVITFDPN----YSVELCGGT 681 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV +TG I L E S+ GIRR+EA T A + + Q + L LK + +VV Sbjct: 682 HVPATGHIGLFKFTGEGSVSTGIRRVEAKTSAGAEALVNEQMAVVSELKELLKAPK-DVV 740 Query: 758 GRVEEIWEEYRKLQ----LIHAKRKLQLNVEDLSCHKIADVNF-----MSHIISEVD--- 805 V+ + +E LQ + ++ QL + L KI VN S ++ V+ Sbjct: 741 KAVQSLLDERAALQKQVEALQNEKVQQLKNQLLD--KIETVNHNGGPGYSRLVERVEVPN 798 Query: 806 SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD--RFNAVDLARLSAKVL 863 + LK + L+ K+ + + +++G K + +++ + L+ + NA + + AK + Sbjct: 799 ADALKQLAYDLKAKVDN-LAVVLGADINGKPQLAVMLPDSLIQDKKLNAGQVVKELAKNI 857 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIA 890 GGGGG+P A +GG + + D A+A Sbjct: 858 -KGGGGGQPFFATAGGTDLSGLDAALA 883 >gi|289706211|ref|ZP_06502574.1| alanine--tRNA ligase [Micrococcus luteus SK58] gi|289557050|gb|EFD50378.1| alanine--tRNA ligase [Micrococcus luteus SK58] Length = 903 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 320/874 (36%), Positives = 470/874 (53%), Gaps = 71/874 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I + FF+ GH ++PS+SL+ DP+L+FT +GMVPF F G++ P V +VQK Sbjct: 6 IARRWTAFFESRGHRVVPSASLV-SPDPSLLFTVAGMVPFIPYFLGEQTPPSPRVVSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D++ VG+T RH TFF+M GNFSFG YFKE AI +AW+LLT F LD Sbjct: 65 CIRTA----DIEEVGKTVRHGTFFQMCGNFSFGDYFKETAIPMAWELLTSSVEDGGFGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY ED+EA ++W++ G+ ++I R+ +DN+W+ + GP GPCSEIF+D+G Sbjct: 121 PERLWVTVYREDDEAERIWREDVGVRPERIQRMGKDDNYWNTGQPGPGGPCSEIFYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFI---LPKMSIDTGMGLERMAT 235 G G + + RYIEIWNLVFMQ+ ++K + I L +IDTG+GLER+A Sbjct: 181 AY-GVDGGPAADDTRYIEIWNLVFMQYRLSAVRSKDDFDIAGELENKNIDTGLGLERLAM 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFLI 286 +LQ N Y+ D + ++ + Q+ G Y ++ V R++ DH+RS+ LI Sbjct: 240 ILQGVENMYETDQVRPVLDRAAQLAGRAYTSTEDPADPHYDDDVRLRMVADHVRSALMLI 299 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 +DG+ P NEGRGYVLRR++RR + RL+G TEP+ LLP M YP + Sbjct: 300 SDGVRPGNEGRGYVLRRLIRRVVRALRLMGVTEPVFPELLPVSRDAMKGTYPVVADEFER 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 I +E++ F +T+ G LD + + G AF+L+DT+G P+++ +I Sbjct: 360 ISRIAYAEEKAFLRTIAAGTARLDAAVGQARSAGGGIAGPDAFELHDTYGFPIELTLEIA 419 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 G+A +D F + EQR RARA + SG T+ + G T F GY Sbjct: 420 EEAGVA-VDEAGFRALMAEQRDRARADAKAKKSGHTDTAVYQRLRAEGQTHFTGY----- 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + S+V+ ++Q GE V A +G ++E+V D TPFYAE+G Sbjct: 474 ------------------TEHTTESVVRGLLQNGEEVPSAGAGTELELVLDATPFYAESG 515 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ DTG GDG RL++ DVQ +G+ VH V G + + ID Q R Sbjct: 516 GQAADTGLITGDGFRLEVLDVQAPVKGLSVHRVKVLDGEVAAGAQALGAIDLQRRLDGEK 575 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS THL+H AL ILG +Q+GS LRFD ++ +++ +ED VN I Sbjct: 576 AHSGTHLVHAALHQILGPEATQSGSFNKEGYLRFDFRWAESLSAGARSEVEDVVNIAIRD 635 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V+T+ M+ E+A A GA +L G KY DRVRVV ++ G S LCGGTHV T +I Sbjct: 636 DHTVLTQEMSLEEARALGAMSLFGEKYGDRVRVVEID----GAWSRELCGGTHVGRTAQI 691 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ-------DEKLKSLASFLKVSQGNVVG 758 L ++ E S+ +G RR+EA+ G + HL + E K+ A LK G + Sbjct: 692 GSLTLLGEQSVGSGNRRVEALVGLDSFRHLAAERTLVSELSEMFKAPAEELKDRIGATLD 751 Query: 759 RV---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815 R+ E+ E R L +L +D++ V ++H +V +L+S+ Sbjct: 752 RLKAAEKQVAELRAQALQAQAGQLAGQAQDVTTSAGTTVRVLAHHAGDVAGDQLRSLALD 811 Query: 816 LQKKIQS------GIIMLVGISKEKKASVLIVVT 843 L+ +I+S G +LV ++ E K L++V Sbjct: 812 LRTRIESAGGNAAGTPVLVALTAEAKGRPLVIVA 845 >gi|269837587|ref|YP_003319815.1| alanyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745] gi|269786850|gb|ACZ38993.1| alanyl-tRNA synthetase [Sphaerobacter thermophilus DSM 20745] Length = 879 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 333/912 (36%), Positives = 508/912 (55%), Gaps = 58/912 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR F+EFF + GH +PSSSL+P NDPT++ T +GM F G E+P +T++ Sbjct: 4 NEIRRIFVEFFAERGHLHVPSSSLVPHNDPTVLLTTAGMQQMTPYFLGLERPPSVRMTSI 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC R D+D VG H TFFEMLGNFS G YFK AI AW+LLT+ F + + R Sbjct: 64 QKCFRT----VDIDEVG-DEEHLTFFEMLGNFSVGDYFKAEAISWAWELLTERFGIPRER 118 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-SMAETGPCGPCSEIFFDQGECI 183 L +V+ DE AF W+ G+ I R+ N+W + TGP GP SEIF+D+GE + Sbjct: 119 LRPSVHRNDEFAFAFWRDEIGIPEHLIARLGDEHNWWGPVGTTGPNGPDSEIFYDRGEEL 178 Query: 184 PGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 G P + R++EIWNLVFM+F ++ + LP+ +IDTGMGLER++ VLQ Sbjct: 179 GCGRPDCGPGCDHCNRFLEIWNLVFMEFYKEEDGSQRPLPRKNIDTGMGLERISMVLQGV 238 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANEGRG 298 + ++ DL+ ++ + ++ G++Y + V+ RVI DH R+ +FLI DG+ P NEGR Sbjct: 239 GSVFETDLYMPVLLKAAELAGVQYRQDPKVDRSLRVIADHGRAVTFLIGDGVFPGNEGRS 298 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRR++RRA+ + RL+G P + + + YP L + + I + +R E+E F Sbjct: 299 YVLRRVLRRAVRHGRLIGIDRPFLTEVADVVIDMFAEHYPNLREQQERIRQVIRHEEEHF 358 Query: 359 GKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 G+TL G+ + + + L + ++ G AF+LYDT+G P ++ +++ GL +D Sbjct: 359 GRTLATGIGRFETLAADLRARGETVVPGAEAFRLYDTYGFPYELTEELASDAGLT-VDRE 417 Query: 417 SFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F++A+ QR SRA A + T ++ +L +K T F+GY+ Sbjct: 418 GFDRAMAAQREQSRASAAIFSDEARTRAALYANLTDK--PTVFLGYE------------- 462 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 T + V I+ E A +G++VE+V DQTPFY E GGQ+GDTG Sbjct: 463 ----------TTEATGTVVGILGAEAAQESAEAGEQVEIVLDQTPFYPEGGGQVGDTGNI 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 D ++ D Q+ A G+ VH IV G ++ + +D Q R + NH+ATHLLH Sbjct: 513 QTDTGVFEVEDTQRPAPGVIVHRGIVREGYIQVGQTAEARVDAQRRADIRRNHTATHLLH 572 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 AL +LG HV Q GS + PD LRFD T +P+ +A L+ +++ VN I + PV I Sbjct: 573 TALRRVLGEHVQQAGSLVAPDRLRFDFTSLEPVGAAALREVQEIVNQQILADSPVQAEIK 632 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 ++AIA GA AL G KY D VRVV++ S LCGGTHV+ TGEI L I ES Sbjct: 633 PYQEAIAEGAIALFGEKYGDNVRVVTIPS-----FSKELCGGTHVNHTGEIGLFVITEES 687 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIH 774 S+ +G+RR+EA+TG+ A + + E + L L V + +V + E R+ + Sbjct: 688 SVASGVRRVEALTGRAAAEYALRLQEMSQRLVRDLHVPLDELPAQVAALQERLREREREI 747 Query: 775 AKRKLQL---NVEDLSCHKIADVNFMSHIISEVDSKELKSVM---DALQKKIQSGIIMLV 828 + +++L + DL K V+ + + V++ +++ D L+ K+ SG+++L Sbjct: 748 ERLRVELASVQIGDL-IEKAVTVDGTRVLAARVEAPNRDTLLQMGDRLRDKLASGVVVL- 805 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKAD 886 G + + ++L +VT DL+ R VD +L ++ + GG GGGRP +AQ GG + ++ D Sbjct: 806 GAVIDDRPALLAMVTRDLVQR--GVDAGKLIREITPVVGGRGGGRPELAQGGGTDPSRLD 863 Query: 887 QAIAGVASFLKK 898 A+ S +++ Sbjct: 864 AALETARSVVER 875 >gi|326382143|ref|ZP_08203835.1| alanyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395] gi|326198873|gb|EGD56055.1| alanyl-tRNA synthetase [Gordonia neofelifaecis NRRL B-59395] Length = 900 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 334/926 (36%), Positives = 488/926 (52%), Gaps = 84/926 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F + GH +PS+SLI +DP L+F N+GMVPFK F G + P Y T+VQK Sbjct: 6 IRKRFLDHFIRAGHTEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGDQTPPYDRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR D++ VG T RH+TFF+M GNFSFG YFK AI AW LLT + +D Sbjct: 65 CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKREAITFAWKLLTDSVEDGGYGID 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+ TVY +D+EA +W+ G+ A++I R DN+WSM GPCGPCSEIF+D+G Sbjct: 121 PTKLWPTVYLDDDEAESIWRDEIGVPAERIQRRGMADNYWSMGVPGPCGPCSEIFYDRGP 180 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E+ +K + IL PK +IDTGMG+ER+A Sbjct: 181 EY--GVEGGPEADEDRYIEIWNLVFMQNERGEGTSKDDYEILGPLPKKNIDTGMGIERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291 +LQ N Y+ DL K +I + ++TG Y N V RVI DH R+++ LI DG++ Sbjct: 239 CLLQGVDNVYETDLMKPIIDLAAELTGRAYGAGNHEDDVRFRVIADHARTAAMLIGDGVV 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGY------------TEPLMMHLLPALCTEMGSAYPE 339 PAN+GRGYVLRR++RR + RLLG P M ++ + M +YPE Sbjct: 299 PANDGRGYVLRRLLRRIVRSIRLLGAGNEVSGPDGRGAANPTMERIISEVIDVMSPSYPE 358 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397 L Q + I +E+ F +TL G L K ++G AF L+DT+G P Sbjct: 359 LEQQRTHIVSVAVAEETTFARTLAAGSKLFSEAADATKKAGSSSISGTDAFTLHDTYGFP 418 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ GL +D F + + EQR+RA+A + S + + GAT+F Sbjct: 419 IDLTLEMAAEAGLE-VDRDGFKELMGEQRARAKADASARKSSHADHSVYREFLDRGATEF 477 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 G+D L + E R V +V G+ V A G ++E++ D+ Sbjct: 478 TGFDEL-----VSEAR------------------VLGLVAGGQRVRSAAPGTELELILDR 514 Query: 518 TPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 +P YAEAGGQ+ D G GDG+RL + DVQK + +++H +V+ G + ++ ++D Sbjct: 515 SPLYAEAGGQMADRGTITTGDGVRLAVKDVQKVGKKVWLHKVVVDEGEIVEGDEVLASVD 574 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R + HS TH++H AL +LG +Q GS P LRFD +T A+ IE Sbjct: 575 AGWRHGATQGHSGTHMVHAALRQVLGPTATQAGSLNRPGYLRFDFHAGTGLTDAQRDEIE 634 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 N + N V T + A + GA AL G Y DRVRVV + GG S LCGG Sbjct: 635 QIANQAVESNFAVNTFETDLAKAKSMGAMALFGENYGDRVRVVEI----GGPFSMELCGG 690 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV+S+ +I + ++ ESS+ +G RR+EA G + +L + + LA+ LKV V Sbjct: 691 THVASSAQIGPITVIGESSVGSGTRRVEAYVGMDSFRYLSRERALMAGLAASLKVPSEEV 750 Query: 757 VGRVEEIWEEYRKLQLIHAKRKLQ-LNVEDLSC---------HKIADVNFMSHIISE-VD 805 RVE++ L+L A++ ++ L E + D ++ +++ VD Sbjct: 751 PDRVEQL-----VLKLKEAEKAVESLRAEQARAAVSGLIDEGATVGDTLVVAARVADGVD 805 Query: 806 SKELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 + L+ ++ L+ +I ++ ++ L K + A DL + A ++ Sbjct: 806 ANGLRGLVTDLRGRIADRNAVVALFSAVDGKVPFAIGTTDAARGSGIKAGDLVKEVAPIV 865 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAI 889 G GGG+P +AQ G + D A+ Sbjct: 866 -AGRGGGKPDLAQGSGTDAAGIDAAL 890 >gi|225021330|ref|ZP_03710522.1| hypothetical protein CORMATOL_01349 [Corynebacterium matruchotii ATCC 33806] gi|224945712|gb|EEG26921.1| hypothetical protein CORMATOL_01349 [Corynebacterium matruchotii ATCC 33806] Length = 905 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 328/908 (36%), Positives = 487/908 (53%), Gaps = 75/908 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F F K GHE +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 22 IRERFTHHFVKAGHEAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQTPPFPNGTATSI 80 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT D Sbjct: 81 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWSLLTSPIDEGGYG 136 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D ++++TVY +D+EA +W+ + G+ ++I R+ DNFWSM GPCGP SEI++D+ Sbjct: 137 FDPEKIWVTVYLDDDEAANIWENVVGIPTERIQRLGMADNFWSMGIPGPCGPSSEIYYDR 196 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233 G G G + + RY+EIWNLVFM+ E + N + LPK +IDTGMG+ER+ Sbjct: 197 GPEY-GNEGGPAADDSRYLEIWNLVFMEKERGAGTGKDNFEILGPLPKKNIDTGMGVERI 255 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ N Y+ DL + +I ++++TG Y N + + RVI DH R++ +I DG+ Sbjct: 256 ACLLQGVDNVYETDLLRPVIDEAQRLTGATYGANHEDDIRFRVIADHSRTAMMIILDGVT 315 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGY+LRR++RR + ARLLG T M + + M +YPE+ + I+ Sbjct: 316 PGNEGRGYILRRLLRRIIRSARLLGATGKTMESFMNTIMDTMTPSYPEIADNRERIQRVA 375 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E+ F KTL+ G L + + + GK + D AF L+DT+G P+D+ ++ Sbjct: 376 ITEETAFLKTLESGTELFETTAAKIKQEGKTTVAGAD-AFALHDTYGFPIDLTLEMAAEA 434 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F++ + EQR+RA+A S G T+ + T+FIGYD L Sbjct: 435 GLQ-VDTEGFDKLMAEQRARAKADSQAKKHGHTDLSIYRDWVDNHPTEFIGYDELT---- 489 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 S V ++ G+ V E +G VEV+ D + FYAEAGGQ+ Sbjct: 490 -------------------AQSHVIGLLSDGKKVSEVSAGHDVEVILDASTFYAEAGGQI 530 Query: 529 GDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GD G +GD + L++ DVQK + ++VH A VE G ++ +D R H Sbjct: 531 GDRGTMTLGDSL-LRVNDVQKIGKKLWVHRATVETGGFALGDTVTAAVDPAWRHAARQAH 589 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+H AL +LG Q GS P LRFD +++ +T +L+ IE N + + Sbjct: 590 SATHLIHAALREVLGPTAVQAGSMNKPGYLRFDFNYTEQLTPEQLEHIELITNQAVDADW 649 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T ++A A GA AL G Y + VRVV + GG S LCGGTHV+ + +I Sbjct: 650 QVNTIETTLDEAKAMGAMALFGENYGNIVRVVEI----GGPFSMELCGGTHVAHSSQIGP 705 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV------- 760 + I+ ESSI +G RRIEA +G + +L + + LAS LK V R+ Sbjct: 706 VSILGESSIGSGARRIEAYSGLDSFKYLSKERTLVAGLASALKAPSAEVPDRIAQLTTKL 765 Query: 761 ---EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDAL 816 E+ E RK +L+ +L H + S ++ + + +L+++ + Sbjct: 766 KEAEKTIENLRKAELLAQGNRLVAR-----AHLPNGIIVASAVLPDGTTAGDLRTLAADV 820 Query: 817 QKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873 + + ++G+++L + + K ++ T++ + R NA + + + G GGG+P Sbjct: 821 KNHLAGEAGVVLLASSTSDGKVPFVVAATKEAIARGANAGTIVKTLNPYI-DGRGGGKPD 879 Query: 874 MAQSGGPN 881 MAQ G N Sbjct: 880 MAQGSGSN 887 >gi|208435135|ref|YP_002266801.1| alanyl-tRNA synthetase [Helicobacter pylori G27] gi|208433064|gb|ACI27935.1| alanyl-tRNA synthetase [Helicobacter pylori G27] Length = 817 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 317/851 (37%), Positives = 474/851 (55%), Gaps = 60/851 (7%) Query: 36 LMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLG 94 ++FTN+GMV FK+IFTG +P T+ Q C+RAGGKHNDL+NVG T RHHT FEMLG Sbjct: 1 MLFTNAGMVQFKDIFTGMVPRPSIPRATSSQLCMRAGGKHNDLENVGYTARHHTLFEMLG 60 Query: 95 NFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI 154 NFSFG YFKE I AW+ +TK + LYI+V+++D+EA KLW+K + D+I ++ Sbjct: 61 NFSFGDYFKEETILFAWEFVTKNLGFKPKDLYISVHEKDDEAVKLWEKF--VPVDRIKKM 118 Query: 155 TTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQ 210 DNFW M ++GPCGPCSEI+ DQGE GS + EG+R++EIWNLVFMQ+E+ Sbjct: 119 GDKDNFWQMGDSGPCGPCSEIYIDQGE---KHFKGSEDYFGGEGDRFLEIWNLVFMQYER 175 Query: 211 QNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIV 270 N LPK SIDTGMGLER+ +L+ K NN+D LF L+ ++T + Y Sbjct: 176 SNDGVLSPLPKPSIDTGMGLERVQALLEHKLNNFDSSLFAPLMGEISELTSLDYASEFQP 235 Query: 271 NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALC 330 + RV+ DH R+ +FL+A G+ EGRGYVLRRI+RRA+ + L+G E + ++ +C Sbjct: 236 SFRVVADHARAVAFLLAQGVHFNKEGRGYVLRRILRRALRHGYLMGLKEAFLYKVVGVVC 295 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL 390 + + + L ++K ++ + E+ERF +TL+ G+ L + L HL +++I +G +AFKL Sbjct: 296 EQFSNTHAYLKESKEMVMKECFEEEERFLETLESGMELFNLSLKHLNENKIFDGKIAFKL 355 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 YDT G PLD+ D+L + G A +D+ F ++EQ R++A G + + ++ Sbjct: 356 YDTFGFPLDLTNDMLRSHG-ACVDMQGFELCMQEQVKRSKASWKGKQNNAD---FSAILN 411 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 Y +F+GY+ + P + S K I +A Q+ Sbjct: 412 AYAPNEFVGYE---------------TTECPAKVLGFFDSDFKEIT-------DANPNQE 449 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 V V+ ++TPFYAE GG +GD G + D I K G+ +++ + + + Sbjct: 450 VWVLLEKTPFYAEGGGAIGDRGTLLKDNEEAAIVLDTKNFFGLNFSLLEIKKALKKGDQV 509 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + D R +++ +HSATHLL AL +LGSHVSQ GS + LRFD +H+K + Sbjct: 510 IAQVSD--ERLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHAKALNDE 567 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHS 690 EL+ +ED VN I ++L M A GA AL KY + VRVVS + S Sbjct: 568 ELEKVEDLVNAQIFKHLKSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKEA-----S 622 Query: 691 SALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLK 750 LCGG HV +TG I IV ES + +G+RRIEA+ G+ ++++LK+ + LK Sbjct: 623 IELCGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLK 682 Query: 751 VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 +V+ + ++ E + Q K + + DL KI V+ + ++ + D KE+ Sbjct: 683 --NNDVIAGINKLKESVKNSQ----KAPVSM---DLPIEKIHGVDLVVGVVEQGDIKEM- 732 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 +D L+ K + + M+ KE + L ++ + NA A A++L GG GGG Sbjct: 733 --IDRLKSKHERLLAMV--FKKENERITLACGVKNAPIKANA--WANEVAQIL-GGKGGG 785 Query: 871 RPHMAQSGGPN 881 R A +GG + Sbjct: 786 RDDFASAGGKD 796 >gi|326496549|dbj|BAJ94736.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 981 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 336/917 (36%), Positives = 505/917 (55%), Gaps = 91/917 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +IR FL+F+ GH++LPSSSL+P +DPT+ T +GM+ FK IF G+E TT Q Sbjct: 87 AIRRRFLDFYAARGHKILPSSSLVP-DDPTVFLTIAGMLQFKPIFLGKEPRRVPCATTSQ 145 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R ND++NVGRT+RH TFFEMLGNFSFG YFK+ AI+ AW+L TKE+ L RL Sbjct: 146 KCIRT----NDIENVGRTSRHQTFFEMLGNFSFGDYFKKDAIKWAWELTTKEYGLPPERL 201 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 +I+V+++D+E F +W G+ ++I R+ +DNFW+ TGPCGPCSE+++D G Sbjct: 202 WISVFEDDDETFSIWLNEVGVPKERIKRMGEDDNFWTSGATGPCGPCSEMYYDF-HPERG 260 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 L + R+IE +NLVFMQ+ + + L + +IDTGMGLERMA +LQ NNY+ Sbjct: 261 SLNADLNDDSRFIEFYNLVFMQYNKNDDGSLEPLKQKNIDTGMGLERMARILQNVPNNYE 320 Query: 246 IDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DL +++ + + + Y + N +VI DH+R+ +LI+DG++P+N GRGYV+R Sbjct: 321 TDLIFPIMEKAASMALVSYSKADDAMRTNLKVIGDHMRAVVYLISDGVIPSNIGRGYVVR 380 Query: 303 RIMRRAMCYARLLGYT----EPLMMHLLPALCTEMGSAY----PELIQAKLLIEETLRSE 354 R++RR + RL+G E +LP+L + S P++ + I L+ E Sbjct: 381 RLIRRVVRTGRLIGMRGDGHENSEGAVLPSLAETVISLSSEIDPDVESRRKSILGELQRE 440 Query: 355 DERFGKTLDRG-------LVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + RF +TL RG L G +G L+G F LYDT+G P++I +I Sbjct: 441 ELRFVQTLGRGEKLLDELLDEALGSAGDIGV-PCLSGKDVFLLYDTYGFPIEITAEIASE 499 Query: 408 RGLAGIDIISFNQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG+ ID+ F+ +E QR +++A + + L G +I S+ + T+F+GY+ L Sbjct: 500 RGVT-IDMKGFDIEMENQRKQSQAAHNVIKLSVGNETEIVKSIPD----TEFLGYESLF- 553 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 +++VK ++ G VE G VE++ D+TPFYAE+G Sbjct: 554 ----------------------ATAVVKGLLINGSPVENVSEGTDVEILLDRTPFYAESG 591 Query: 526 GQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 GQ+GD G ++I DVQK IFVH +++G + + +D + Sbjct: 592 GQVGDNGFLYVYEEEGGKQNAVIEIKDVQKSLGNIFVHKGTIKQGSIEVGKKIDAAVDGK 651 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R+ +H+ATHLL AL +++GS SQ GS + D LRFD + +P+T EL IE Sbjct: 652 LRQGAKAHHTATHLLQSALKSVIGSETSQAGSLVAFDRLRFDFSFHRPLTEKELLEIESL 711 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 VN I+ + T +M +DA +GA A+ G KY ++VRVV V GV S LCGGTH Sbjct: 712 VNQWISDATHLETNVMALQDAKNAGATAMFGEKYGEQVRVVEVP----GV-SMELCGGTH 766 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 VS+T EI I+SE I +G+RRIEA+ G ++ +D ++ L S LKV +V Sbjct: 767 VSNTAEIRGFKIISEQGIASGVRRIEAVAGDAFVEYVCSRDNYMRHLCSSLKVKAEDVNS 826 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIA---------DVNFMSHIISEVDSKEL 809 RVE I EE R + + L+ + L +A +V + + +VD+ L Sbjct: 827 RVETILEELRTAR--NESSSLRSKIAVLKAASLASKAVLVEPHNVRILVENMGDVDADGL 884 Query: 810 KSVMDALQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG--- 865 KS + L +Q +++G S + K S++ + + V + + K +GG Sbjct: 885 KSAAEHLVGTLQDPAAVILGSSPGDGKVSLVAAFSPGV------VKMGVQAGKFVGGIAK 938 Query: 866 ---GGGGGRPHMAQSGG 879 GGGGG+P+ AQ+GG Sbjct: 939 LCGGGGGGKPNFAQAGG 955 >gi|269956481|ref|YP_003326270.1| alanyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894] gi|269305162|gb|ACZ30712.1| alanyl-tRNA synthetase [Xylanimonas cellulosilytica DSM 15894] Length = 895 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 318/868 (36%), Positives = 480/868 (55%), Gaps = 66/868 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L++F+ H ++PS+SL+ DP+++FT +GMVPF G E + +V Sbjct: 4 ADIRQRWLDYFESKDHAIVPSTSLV-SPDPSILFTIAGMVPFIPYILGTEPAPWPRAASV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKC+R G D++NVGRT RH TFF+M GNFSFG YFK AI +AW+LLT + + Sbjct: 63 QKCIRTG----DIENVGRTTRHGTFFQMNGNFSFGDYFKTGAIDMAWELLTTDQGQGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D RL++T++DED E++ + GL I+R+ +NFW + GP GPC+E +D+ Sbjct: 119 FDGDRLWVTLWDEDTESYDALTQGIGLDPKHIVRLPRQENFWDTGQPGPAGPCAEWHYDR 178 Query: 180 GECI-PGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232 G P + G+ + G +RY+EIWNLVF QF E K + L + +IDTG GLER Sbjct: 179 GPAYGPDAVGGNVDPGGDRYLEIWNLVFDQFVRGEGTGKDYPLLGELERKAIDTGAGLER 238 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGI 290 +A +LQ K N ++ID +I+ EQ+TG KY E + V RVI DH+RS +I DG+ Sbjct: 239 IAFLLQGKENMFEIDETYPVIERVEQLTGKKYGAEAEDDVRMRVIADHVRSGLMVIGDGV 298 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+NEGRGYVLRRI+RRA+ RLLGY + LLP M ++YPEL I E Sbjct: 299 RPSNEGRGYVLRRILRRAVRSMRLLGYDAEALPELLPVSKDAMKASYPELETGFAKIAEV 358 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E+E F +TL G +LD ++ K + L G AF L+DT+G P+D+ ++ + Sbjct: 359 AYGEEEAFRRTLSAGTTILDVAVAKAKKSGVQTLGGAEAFALHDTYGFPIDLTLEMAAEQ 418 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGYDLLRGS 466 G+A +D +F + EQ+ RARA +L +G + + + S+ A +F+GY Sbjct: 419 GVA-VDEQAFRSLMAEQKQRARADALAKKTGHADLRAYESIVSALSAPVEFLGY------ 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 DL + V+ V ++ G A + VEVV D+TPFYAEAGG Sbjct: 472 ---------------TDLDSAVT--VVGLLVDGVPAPVATAPADVEVVLDRTPFYAEAGG 514 Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G + D G +++ DVQ+ +G+ VH + G + TID + R +S Sbjct: 515 QLADQGTIVLDGGATVEVDDVQRPIKGLNVHRGRLVEGTITLGDPGTATIDVERRVAISR 574 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HSATH++H AL ++G +Q GS P +RFD + ++ L IE+ VN + + Sbjct: 575 AHSATHMIHKALHELVGDDRTQAGSENAPSRVRFDFRSPSAVPASALGEIEERVNLRLQE 634 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 NL V +M A GA AL G KY D VRVVS+ GG S LCGGTHV +GEI Sbjct: 635 NLEVTDELMPIATARDLGAMALFGEKYGDIVRVVSI----GGDWSRELCGGTHVRLSGEI 690 Query: 706 MLLYIVSESSIRAGIRRIEAITGQ-----RARSH-LMGQ-DEKLKSLASFLKVSQGNVVG 758 + ++ E+SI +G+RR++A+ G+ +A+ H L+GQ L + L G+++ Sbjct: 691 GRVALLGEASIGSGVRRVDALVGEGAYGFQAKEHALVGQLTGLLGARPEELTDRVGSLLS 750 Query: 759 RVEEIWEE---YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815 +++E +E RK QL+ A +L D+ ++ V + + ++ D +L++++ Sbjct: 751 KLKETEKELAALRKGQLLAAAGRLASEASDVDGVRV--VTYDAGDVASAD--DLRALVLD 806 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVT 843 ++ ++ +LV + S L+VV Sbjct: 807 VRGRLGDAAPVLVAVGGTAGGSPLVVVA 834 >gi|111024085|ref|YP_707057.1| alanyl-tRNA synthetase [Rhodococcus jostii RHA1] gi|123144037|sp|Q0S0N7|SYA_RHOSR RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|110823615|gb|ABG98899.1| alanine--tRNA ligase [Rhodococcus jostii RHA1] Length = 890 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 312/780 (40%), Positives = 436/780 (55%), Gaps = 55/780 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+SLI +DP L+F N+GMV F F GQ+ P Y T+VQK Sbjct: 6 IRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVQFVPFFLGQQTPPYPRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 CVR D++NVG T RH+TFF+M GNFSFG YFK AI+ AW LLT D D Sbjct: 65 CVRT----LDIENVGITTRHNTFFQMAGNFSFGDYFKRDAIKHAWALLTSSVDDGGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 R+++TVY +D++A +W+ G+ +I R DN+WSM GPCGPCSEI++D+G Sbjct: 121 PERIWVTVYLDDDDARDIWRDEVGVPESRIQRRGMADNYWSMGIPGPCGPCSEIYYDRGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMA 234 E G P + E+ RYIEIWNLVFMQ E + N + LPK +IDTGMG+ER+A Sbjct: 181 EYGKEGGPEADED--RYIEIWNLVFMQNERGLGISKDNFEILGPLPKQNIDTGMGVERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADGILP 292 +LQ N Y+ DL + +I +E+++G KY ++ V RVI DH R+++ LIADG+ P Sbjct: 239 FLLQGVDNVYETDLVRPVIAKAEELSGRKYGAVHDDDVRFRVIADHARTAAMLIADGVNP 298 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 N+GRGYVLRR++RR + A+LLG +P M + + M +YP L IE Sbjct: 299 GNDGRGYVLRRLLRRIVRSAKLLGADKPSMREFITVVRDTMAPSYPVLDTDFGRIETVAV 358 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+ F KTL G L +G + GK I GD AF L+DT+G P+D+ ++ G Sbjct: 359 GEETAFLKTLTSGSKLFEGAAESVKASGKSTI-GGDQAFALHDTYGFPIDLTLEMAAEAG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D F + EQR RA+ + + + G T+F G+ L Sbjct: 418 LT-VDEEGFRTLMAEQRQRAKDDAQARKHAHADLTVYKELLDRGPTEFTGFHELVSEAH- 475 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 V A++ QG+ V A +GQ VEV+ D++P YAEAGGQ+ Sbjct: 476 ----------------------VLALISQGQRVPVATAGQDVEVILDRSPLYAEAGGQIA 513 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHS 588 D G G G+R+++ DVQK A+ ++VH V+ G L TE +VL +D R+ + HS Sbjct: 514 DLGTLTGPGLRVKVNDVQKIAKKLWVHKVTVQEGQL-TEGDVVLAQVDAAWRKGATQGHS 572 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 TH++H AL +LG + Q GS P LRFD + +T A+ + IE N+ +A + Sbjct: 573 GTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALTEAQKQDIEVVANEAVAADYS 632 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + + + A + GA AL G Y D VRVV + GG S LCGGTHV S+ +I + Sbjct: 633 VNTFVTDLDKAKSMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSSQIGNV 688 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++ E S+ +G+RR+EA G + +L + L L+S LKV V RVE + E R Sbjct: 689 TLLGEQSVGSGVRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVERLR 748 >gi|229493550|ref|ZP_04387335.1| alanyl-tRNA synthetase [Rhodococcus erythropolis SK121] gi|229319511|gb|EEN85347.1| alanyl-tRNA synthetase [Rhodococcus erythropolis SK121] Length = 890 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 310/780 (39%), Positives = 434/780 (55%), Gaps = 55/780 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+SLI +DP L+F N+GMVPF F GQ+ P Y T+VQK Sbjct: 6 IRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVPFVPFFLGQQTPSYSRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR D++ VG T RH+TFF+M GNFSFG YFK+ AI AW LLT + +D Sbjct: 65 CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKKEAISHAWQLLTGSVEDGGYGID 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ TVY +D+EAF +W+ G+ ++I R DN+WSM GPCGPCSEIF+D+G Sbjct: 121 PTRLWATVYLDDDEAFSIWRDEVGVPEERIQRRGMKDNYWSMGIPGPCGPCSEIFYDRGA 180 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E+ NK + IL PK +IDTGMG+ER+A Sbjct: 181 EY--GVEGGPEADEDRYIEIWNLVFMQNERGEGTNKGDYPILGPLPKKNIDTGMGVERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292 +LQ N Y+ DL + +I + ++TG Y ++ V RVI DH R+++ LIADG+ P Sbjct: 239 FLLQGVENVYETDLLRPVIDKAAELTGSVYGTDHTSDVRFRVIADHARTAAMLIADGVNP 298 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 N GRGYVLRR++RR + A+LLG +P M + + M +YP L IE Sbjct: 299 GNYGRGYVLRRLLRRIVRSAKLLGSEQPTMREFMIVVRDTMAPSYPVLETDFTRIENVAV 358 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+ F KTL G L + + GK ++ GD AF L+DT+G P+D+ ++ G Sbjct: 359 GEETAFLKTLASGSALFENAAETVKSSGK-SVIAGDQAFALHDTYGFPIDLTLEMASEAG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D F + EQR RA+ + + + GAT+F G+D L Sbjct: 418 LT-VDEDGFRTLMAEQRKRAKDDAQARKHAHADLTVYKELLDRGATEFTGFDELVSEAH- 475 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 V A++ G V A +GQ VEV+ D++P YAE+GGQ+ Sbjct: 476 ----------------------VLALIVDGVRVPVATAGQDVEVILDRSPLYAESGGQIA 513 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHS 588 D G G+ ++ DVQK A+ ++ H V++G + TE +VL +D + R+ + HS Sbjct: 514 DIGSLTAPGLEAKVNDVQKIAKKVWTHKVTVQKGEI-TEGDVVLAHVDAEWRKGATQGHS 572 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 TH++H AL +LG + Q GS P LRFD + ++ ++ + IE N+ +A N Sbjct: 573 GTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALSDSQKQDIEALTNEAVASNYA 632 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + + + A A GA AL G Y D VRVV + GG S LCGGTHV S+ +I + Sbjct: 633 VNTFVTDLDKAKAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSAQIGQV 688 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++ E S+ +GIRR+EA G + +L + L L+S LKV V RVE + E + Sbjct: 689 TLLGEQSVGSGIRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVERLK 748 >gi|88802166|ref|ZP_01117694.1| alanyl-tRNA synthetase [Polaribacter irgensii 23-P] gi|88782824|gb|EAR14001.1| alanyl-tRNA synthetase [Polaribacter irgensii 23-P] Length = 872 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 328/873 (37%), Positives = 471/873 (53%), Gaps = 91/873 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR TFL FF++ H ++PS+ ++ +DPTLMF NSGM PFK F G P ++ QK Sbjct: 6 IRATFLNFFKEKSHLIVPSAPMVTKDDPTLMFINSGMAPFKEYFLGNAIPKNNRISDSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D+ LY Sbjct: 66 CLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYKIDKDILY 125 Query: 127 ITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 +TV+ + D EA+ LWKK + D+I++ DNFW M GPCGPCSEI Sbjct: 126 VTVFEGTEDADALEMDTEAYDLWKK--HIPEDRILKGNKKDNFWEMGAQGPCGPCSEIHV 183 Query: 178 DQGECIPGGLPGSSEEGER-------------YIEIWNLVFMQFEQQNKQERFILPKMSI 224 D S+EE E+ +EIWNLVFMQF ++ LP I Sbjct: 184 D---------IRSAEEKEKVDAKTLINGDHPHVVEIWNLVFMQFNRKADGSLEDLPNKHI 234 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSS 282 DTGMG ER+ VLQ +NYD D+FK +I +T KY N + RVI DHLR+ Sbjct: 235 DTGMGFERLCMVLQNVQSNYDTDIFKPIISEIGTITNTKYGSNQQQDIATRVISDHLRAV 294 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELI 341 +F IADG LP+N G GYV+RRI+RRA+ Y L EP + L+ L +MG+A+PELI Sbjct: 295 AFSIADGQLPSNTGAGYVIRRILRRAIRYGFTFLDKKEPFIYKLVDVLSKKMGTAFPELI 354 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 K LIE +R E+ F KTLD+GL+LLD ++S EI +G+ F+LYDT G P+D+ Sbjct: 355 DQKQLIENVIREEEASFLKTLDKGLLLLDVLISSTDSKEI-SGEKVFELYDTFGFPVDLT 413 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 IL +G +D F + L++Q+ R+RA S + + W L E +F+GYD Sbjct: 414 ALILAEKGYT-LDEKGFQEELQKQKKRSRA-----ASESATEDWTVLVED-AVAEFVGYD 466 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L+ S + RKV K G+ ++VF+ TPFY Sbjct: 467 TLKTSVKITRYRKVTSVK---------------------------DGEMYQLVFNLTPFY 499 Query: 522 AEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 E GGQ+GD G ++ D G + I D +K+ I + + IL + ++ + Sbjct: 500 PEGGGQVGDKG-SLEDIHGNVVYILDTKKENNVIIHFTKNLPKHILE---GFIAVVEEKQ 555 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R + + NH+ATHLLH AL +LG+HV+Q GS + LRFD +H +T+ EL +E+ V Sbjct: 556 RYRTACNHTATHLLHQALRKVLGTHVTQKGSAVHSKYLRFDFSHFSKLTTDELFEVENFV 615 Query: 640 NDIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I+ LP+ R + +DAI GA AL G KY D VR + G S LCGGTH Sbjct: 616 NARISGKLPLEEQRNVPMQDAIDQGAMALFGEKYGDTVRAIKF----GA--SVELCGGTH 669 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V +T ++ I SE + +GIRRIEAIT + ++ L + L ++ Sbjct: 670 VKNTSDLWHFKIKSEVGVASGIRRIEAITNDAVKDFYAKNNKILSEIKETLNNTK-EPTK 728 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCH---KIADVNFMSHIISEV--DSKELKSVM 813 V ++ EE LQ ++ L+ + LS ++ D+N +S + ++V D+ +K++ Sbjct: 729 AVLKLQEENNFLQK-QIEQLLREKAQHLSGELKSQLIDMNGVSFLAAKVDLDANGIKNLA 787 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846 L K + ++ + KA + ++++L Sbjct: 788 FDLGKDATNLFLLFANAPSKDKAMLTCYISKEL 820 >gi|317056551|ref|YP_004105018.1| alanyl-tRNA synthetase [Ruminococcus albus 7] gi|315448820|gb|ADU22384.1| alanyl-tRNA synthetase [Ruminococcus albus 7] Length = 885 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 311/891 (34%), Positives = 474/891 (53%), Gaps = 46/891 (5%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 ++++ +R ++L+FF+ G S L+P ND +L+ +GM P K FTGQE P + Sbjct: 4 TSLNDLRESYLKFFESKGCLRHKSYPLVPQNDKSLLLIVAGMAPLKPYFTGQEVPPRVRM 63 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 TT QKC+R G D++NVG+T RH T+FEMLGNFSFG YFK+ AI AW+ +T L Sbjct: 64 TTCQKCIRTG----DIENVGKTARHGTYFEMLGNFSFGDYFKKEAIAWAWEYVTDVLKLP 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+++VY++D+EA K+W + G+ D I+R+ DNFW GPCGPCSEI+FD+GE Sbjct: 120 LDRLHVSVYEDDDEAEKIWHEEIGVPMDHIVRMGKEDNFWEAGTDGPCGPCSEIYFDRGE 179 Query: 182 CIPGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G P G + +RY+E WNLVF QFE+ L + +IDTGMGLER+A ++Q Sbjct: 180 KYGCGKPTCGVGCDCDRYMEFWNLVFTQFERHEDGTYTPLAQKNIDTGMGLERLAALMQG 239 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 + +D+D K + ++ G +Y E V+ RVI DH+R+ +FL +DG+LP+NEGR Sbjct: 240 VDSIFDVDTVKAIRDHICKIAGCEYGAEYKKDVSIRVITDHIRAVTFLASDGVLPSNEGR 299 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYV+RR++RRA+ + +LLG + L+ + Y EL + I + L +E++ Sbjct: 300 GYVMRRLLRRAVRHGKLLGINGLFLKDLVKTVVDCNKCEYNELEEKFDYIVKVLTTEEQN 359 Query: 358 FGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F T+DRG+ +LD + L + L+G+ FKL DT+G PLD+ ++IL +GL+ D Sbjct: 360 FNSTIDRGMKILDEYIEKLQAEGKTTLDGESCFKLSDTYGFPLDLTREILEEKGLSA-DE 418 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + +E+QR AR G E+ F +K +T+F GYD ED Sbjct: 419 EGYAVCMEKQRETARGARESQGYMGAEETVFHKIDKNVSTKFTGYD-------KTED--- 468 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 + ++ + +++E A V +V DQT FYAE+GGQ GDTG Sbjct: 469 -------------TGVISYLANDEDLIENAGVEDVVYIVPDQTCFYAESGGQTGDTGIVE 515 Query: 536 GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHH 595 + + D QK G F V G L + +D R NHS HLL Sbjct: 516 TATGKADVLDTQKAVGGKFALKVKVTEGALTVGQQVTFKVDKAKRLATMRNHSCAHLLQA 575 Query: 596 ALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMN 655 AL ++LG HV Q G + LRFD +H + +T+ E +E VN I L + M Sbjct: 576 ALRSVLGDHVHQAGQLVDSQRLRFDFSHFEAMTNEEKAKVEALVNKYIFDALDITMEEMP 635 Query: 656 REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 +A GA AL G KY + VRVV++ + S CGGTH+++T +I L I+SE+S Sbjct: 636 IAEAQKLGAMALFGEKYGETVRVVTMG-DKSDAASIEFCGGTHLNNTSKIGLFKIISENS 694 Query: 716 IRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIH 774 + +G+RRIEA+TG L + + + LK++ +V R + E + L+ Sbjct: 695 VASGVRRIEAVTGTGVLELLNSNIDTINKASETLKLNNPAELVARCGAVMHEIKGLE--K 752 Query: 775 AKRKLQLNVEDLSCHKI----ADVNFMSHI---ISEVDSKELKSVMDALQKKIQSGIIML 827 + L+ ++ ++ + DVN +S ++ + L+ + D L+ + ++++ Sbjct: 753 ERDSLETSMANMRAKSVLENAVDVNGVSVATAQLTNIKPDVLRKMADELKAANDNVLVIM 812 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 ++ EK V E + +A +A A L G GGGRP A +G Sbjct: 813 TTVNGEKGNIVAAAGKEAVAKGAHAGKIAGKIA-ALTNGKGGGRPDSAMAG 862 >gi|296139683|ref|YP_003646926.1| alanyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162] gi|296027817|gb|ADG78587.1| alanyl-tRNA synthetase [Tsukamurella paurometabola DSM 20162] Length = 890 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 338/915 (36%), Positives = 490/915 (53%), Gaps = 69/915 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F + F K GH +PS+SL+ NDP +F +GMVPF F GQ+ P Y+ T++QK Sbjct: 6 IRKRFTDHFVKAGHTQVPSASLV-LNDPNQLFVIAGMVPFVPYFLGQQTPPYERATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR D++ VG T RH+TFF+M GNFSFG YFK AI+ AW LLT F +D Sbjct: 65 CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKRDAIRFAWSLLTNPVEDGGFGMD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +RL+ TVY +D+EA LW ++ G ++I R DN+WSM GP GPCSEIF+D+G Sbjct: 121 PQRLWSTVYLDDDEARDLWLEV-GQVPERIQRRGMKDNYWSMGIPGPAGPCSEIFYDRGP 179 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERFI----LPKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E Q +E F LPK +IDTGMG+ER+A Sbjct: 180 EY--GVEGGPEADEDRYIEIWNLVFMQNERGQGGGKENFEILGELPKKNIDTGMGIERVA 237 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR---VIVDHLRSSSFLIADGIL 291 +LQ N YD DL + +I ++ +TG +Y + + R VI DH R++ LI DG+ Sbjct: 238 FLLQGVDNVYDTDLLRPVIDRAQDLTGQRYNAGDPEHDRLFRVIADHTRTAVMLIEDGVN 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + ARLLG T M + + M +YP L I Sbjct: 298 PGNDGRGYVLRRLLRRVVRSARLLGATGETMGVFVDTVIATMSPSYPSLADDAQRIRTVA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E+ F KTL++G+ L + GK +L+GD AF L+DT+G P+D+ ++ Sbjct: 358 TGEEAAFLKTLEQGITLFGNAVDSTKSAGK-TVLSGDDAFTLHDTYGFPIDLTLEMASEA 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 GL +D F + EQR RA+ + S + F G T+F G+D L Sbjct: 417 GLQ-VDEDGFRALMAEQRQRAKDDANSRKSALADLSVFREFLDRGPTEFTGFDEL----- 470 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 D +VL +V+ G V G VE+V D++P YAEAGGQL Sbjct: 471 -VSDARVL-----------------GLVKDGVRVPVVHQGDDVEIVLDRSPLYAEAGGQL 512 Query: 529 GDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G G ++ +TDVQ+ A+ ++ H V G + ++ + +D +R + H Sbjct: 513 ADIGTITTAAGAQIVVTDVQRVAKTLWRHQGTVAVGEVSEGDAVTVAVDAGHRHGSTQGH 572 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 S THL+H AL +LG + Q GS P LRFD S ++ + IE N+ + + Sbjct: 573 SGTHLVHAALRQVLGPNAVQAGSLNRPGYLRFDFRWSGGLSEDQRTDIERVTNEAVQADY 632 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T++ + E A SGA AL G Y D+VRVV + GG S LCGGTHV+S+G + Sbjct: 633 DVHTQVTDLETAKKSGAMALFGENYGDQVRVVEI----GGPFSMELCGGTHVASSGLVGP 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + ++ ESS+ +G+RR+EA G ++ +L + + +L S LKV +V GRVE + Sbjct: 689 VTLLGESSVGSGVRRVEAYVGLDSQKYLAKERALVSALTSSLKVPAEDVPGRVESLVSRL 748 Query: 768 RKLQLIHAKRKLQLNVEDL-----SCHKIADVNFM-SHIISEVDSKELKSVMDALQKKI- 820 + + K + Q + L S ++ V + + S V + EL+S++ L+ ++ Sbjct: 749 KDAEKELEKLRAQAALSALSELASSPDRVGAVRLVAAQAPSGVAAGELRSLVTQLKGRLG 808 Query: 821 -QSGIIMLVGISKEKKASVLIV--VTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 ++ +I L + EK V+ +DL A D+ + +A + GG GGG+ MAQ Sbjct: 809 AEAAVIALFAVDGEKVPFVVAANDAAQDL--GVKAGDVVKAAAPAV-GGRGGGKADMAQG 865 Query: 878 GGPNGNKADQAIAGV 892 G + + A+A V Sbjct: 866 AGSDASGMGAALAAV 880 >gi|150025983|ref|YP_001296809.1| alanyl-tRNA synthetase [Flavobacterium psychrophilum JIP02/86] gi|205830094|sp|A6H0Y3|SYA_FLAPJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149772524|emb|CAL44007.1| Alanine--tRNA ligase [Flavobacterium psychrophilum JIP02/86] Length = 887 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 327/930 (35%), Positives = 486/930 (52%), Gaps = 87/930 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +L+FF+ GH ++PS+ ++ +DPTLMF NSGM FK F G P + QK Sbjct: 6 IRQQYLKFFESKGHLIVPSAPIVLKDDPTLMFNNSGMAQFKEYFLGNGTPKSPRIADTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL++VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + + ++ LY Sbjct: 66 CLRVSGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKEAINWAWELLTEVYKIPKQNLY 125 Query: 127 ITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++V++ D+EA+ +WK + + D+II DNFW M + GPCGPCSEI D Sbjct: 126 VSVFEGSKEDNVPFDQEAWDIWKGL--IDEDRIILGNKKDNFWEMGDQGPCGPCSEIHVD 183 Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + + G + + + +EIWN VFM+F ++ LP +DTGMG ER+ Sbjct: 184 LRTPEEKAQVSGKSLVNNDHPQVVEIWNNVFMEFNRKADGSLEKLPAQHVDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN-----------HRVIVDHLRSSS 283 LQ KT+NYD D+F LI+ Q+TG KY N + N RVIVDH+R+ + Sbjct: 244 MALQGKTSNYDTDVFTPLIEKVTQITGYKYTSNEVKNISEEQNKTNIAIRVIVDHVRAVA 303 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 F IADG LP+N G GYV+RRI+RRA+ Y L EP + L+ L ++MG +PE+ Sbjct: 304 FAIADGQLPSNTGAGYVIRRILRRAIRYGFTFLDTKEPFITKLVAVLASQMGEFFPEIKS 363 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 + L+ +R E+ F +TL++GL LLD V++ E+ +G AF+LYDT G P+D+ Sbjct: 364 QQQLVTNVIREEEASFLRTLEQGLQLLDKVVAETKGKEV-SGAKAFELYDTFGFPIDLTA 422 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 IL +G +D FN A++EQ++R+RA S + W L T F+GYD Sbjct: 423 LILREKGYE-LDEAGFNAAMQEQKNRSRA-----ASEVFTEDWSVLIPGNIET-FVGYDK 475 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + RKV +K G ++V D TPFY Sbjct: 476 TENDVKITRIRKVNSKK---------------------------DGILYQIVLDNTPFYP 508 Query: 523 EAGGQLGDTGCAI-------GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 E GGQ+GD G + + + I + K E + H ++ E V + Sbjct: 509 EGGGQVGDKGTLVSANDSSDSEQAKQTIDIIDTKKENNLILH-FAKQLPENIETGFVAKV 567 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 + R S NHSATHL+H AL +ILG+HV Q GS + PD LRFD +H ++ +L+ + Sbjct: 568 NTNLRASTSKNHSATHLMHLALRSILGTHVEQKGSLVNPDYLRFDFSHFSKVSDDQLRQV 627 Query: 636 EDNVNDIIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 E +VN I L + R + ++A+ GA AL G KY D VR++ S LC Sbjct: 628 EASVNAQIEAQLQLTEHRNIPIKEALDKGAMALFGEKYGDNVRMIEFG------ESKELC 681 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754 GG HV +T +I I+SE ++ AGIRRIEAITG ++ Q+ L + LK Q Sbjct: 682 GGIHVKNTAQIWHFKILSEGAVAAGIRRIEAITGDAVKAFYTNQENTLSEIKEVLKKPQ- 740 Query: 755 NVVGRVEEIWEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809 +++ V + ++ KL QL+ K + N +I +NF+S + ++ Sbjct: 741 DILKSVTSLQDDNVKLKKQIEQLLKEKIEGLKNTLVSEFQEINGINFLSKQV-DLSMSST 799 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGG 867 K ++ AL + ++L I +E ++ + ++L+ NA + + K + G Sbjct: 800 KDLLQALGSLKPNSFVVLASI-EENMPNIHCYIAKELVAGKGLNANVVIKELGKYI-EGN 857 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GGG+P A G N + +A+ F+K Sbjct: 858 GGGQPFFASGKGKNVSGIKEALQKAIEFVK 887 >gi|283769383|ref|ZP_06342282.1| alanine--tRNA ligase [Bulleidia extructa W1219] gi|283104040|gb|EFC05424.1| alanine--tRNA ligase [Bulleidia extructa W1219] Length = 875 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 324/910 (35%), Positives = 497/910 (54%), Gaps = 69/910 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + R FL+FF G + P +SL+P +DPTL++ N+G+ K F G++KP+ + Sbjct: 9 NETRQLFLDFFASKGCMIEPGASLVPHDDPTLLWINAGVAALKPYFDGRKKPISHRICNA 68 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQ 122 QK +R ND++NVG+T RHHTFFEMLGNFS G YFK AI AW+ LT K + Sbjct: 69 QKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKVEAITWAWEFLTSKKYIGFEP 124 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 RLY+TVY +D+EA W K+ + + IR T DNFW + GP GP +E+++D+GE Sbjct: 125 ERLYVTVYPDDQEAIDTWIKVGMIPSH--IR-KTEDNFWEIGR-GPGGPDTELYYDRGEK 180 Query: 183 I-PGG----LPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKMSIDTGMGLERM 233 P G L E +RYIE+WN+VF Q++ + + E LP+ +IDTGMGLER+ Sbjct: 181 YDPQGKGEELFFQDLENDRYIEVWNIVFSQYDCHPGEMPRSEYPELPQKNIDTGMGLERL 240 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N+D DLF +I A+E++ + Y E + +RVI DH+R+ +F IADG + Sbjct: 241 VALIQDGQTNFDTDLFLPIIHATEKLASVSYQEEKAKMAYRVIADHIRTVTFAIADGAMF 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGY+LRR++RRA+ + +G + M L+ + M + YP +++ LI ++ Sbjct: 301 SNEGRGYILRRVLRRAVRFGLKIGIEKAFMYQLVEVVARNMEAYYPYVVEKIDLIARLVK 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E F +TL G LL + ++ L G+V F+LYDT+G P ++ ++I G Sbjct: 361 VEEESFHRTLSMGENLLQSAMEQYQSEKKLPGEVVFRLYDTYGFPFELTKEISFEAGYE- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F +E+Q+ RAR + S G +E + E + F+GY Sbjct: 420 VDEEGFKAQMEDQKKRARQARGEIQSMRGQSEDLLNFQTE----SHFVGY---------- 465 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + + V+S + A+ + GE + + + +VV +T FYAE+GGQ D Sbjct: 466 -------------VQSEVTSKITALFRNGERISSLLG--EGDVVLAETVFYAESGGQCAD 510 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHH--AIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 TG ++ ++DVQK G F+HH + VE L+ M + D + R NHS Sbjct: 511 TGILWLGDHKIYVSDVQKSPNGQFLHHVNSDVE---LKEGMEVKGCFDVKKRELTRANHS 567 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 + HLL AL +LG HV+Q GS PD RFD H + ++ +L+ +E+ VN+ I ++P Sbjct: 568 SLHLLQAALKKVLGDHVAQAGSYNCPDYARFDFNHFEKMSEEQLREVENLVNEKIMAHIP 627 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T I+ E+A SGA AL KY D VR+V++ G S CGGTHVS+T E+ L Sbjct: 628 VTTEILPIEEAKKSGATALFDEKYGDFVRIVTM-----GDFSKEFCGGTHVSNTSELGLF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV-GRVEEIWEEY 767 +I SE S+ +GIRRI + T + A H ++ LK AS K+ + N + R++ + EE Sbjct: 683 HIESEESVGSGIRRITSTTKKVALRHFKEMEDYLKESASLFKLKKWNALQDRIQMVLEEN 742 Query: 768 RKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS 822 LQ L K K++ +I +N + + + D+ LK L+ K++ Sbjct: 743 MALQHQIKELKDEKMKMESEAVLAKKEEIHGLNVLILELHDQDNAGLKDYAVLLRNKLER 802 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 G ++L ++K+K V E + NA + + A+ L GG GGG+P +AQSGG Sbjct: 803 GFVLLANVTKDKVVYVAAASQEAIAAGVNAGHIVKKVAQ-LTGGHGGGKPDLAQSGGKEV 861 Query: 883 NKADQAIAGV 892 ++ A+ V Sbjct: 862 DQVKFALESV 871 >gi|15617007|ref|NP_240220.1| alanyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11134963|sp|P57483|SYA_BUCAI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|25293087|pir||B84977 alanine-tRNA ligase (EC 6.1.1.7) [imported] - Buchnera sp. (strain APS) gi|10039072|dbj|BAB13106.1| alanyl-tRNA synthetase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 878 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 315/874 (36%), Positives = 501/874 (57%), Gaps = 69/874 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF++ GH ++PSSSL+P ND TL+FTN+GM FK IF G++K Y V TVQ+ Sbjct: 8 IRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRVATVQR 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT K F++ Q + Sbjct: 68 CLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFNIPQNK 127 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCSEIFF 177 L+I+VY +D E +K+W I + +++IIRI ++NFW M +TGPCGPC+EIF+ Sbjct: 128 LWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPCTEIFY 187 Query: 178 DQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D + + + + R++EIWN+VF++F + +K + L SIDTGMGLER++ V Sbjct: 188 DYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLERISAV 247 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294 LQ +NY ID+F+ LI+ Q++ + NN+ ++ +VI DH+RS S++IAD ILP+N Sbjct: 248 LQNVYSNYHIDVFQKLIKNIAQLSSI----NNLDHISFQVIADHIRSCSYIIADNILPSN 303 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 E RGY+LRRI+RRA+ + +G + L+ ++ MG L + + IE L+ E Sbjct: 304 EHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVLKIE 363 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + +F TL++GL +L+ + + + IL+G AF LYDT G P+D+ D+ C ID Sbjct: 364 EMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDV-CREKNIKID 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 S+ A E+Q+ + S +K + + +L + + K Sbjct: 422 YNSYELAKEKQKEQ---------SNINKKFY---------KNYNNNIILNDTCIFEGYTK 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + S+VK I + V + + +K + D+TPFY+E+GGQ+GD G Sbjct: 464 TITR-----------SLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDIGQL 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +K + I H + G + SL ID R + +NHSATHLLH Sbjct: 513 YHKKSSFLVEKTKKYGKTI-GHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATHLLH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 L ILG + Q GS +T LRFD ++ K I +++++ IE+ +N I N+ + T + Sbjct: 572 ATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKTEEL 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 N E+A A AL +Y VRVV + S LCGGTH TG+I L I+S+S Sbjct: 632 NLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKIISQS 686 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV----------VGRVEEIW 764 S+ +GI+RIEA+TGQ+A +L +D +K ++ L S ++ +E+ Sbjct: 687 SVASGIKRIEAVTGQKAIDYLHEKDNYIKDISLLLNCSTVDIKEKTKKLTIKTKNLEKKI 746 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + +K + +K+ NV ++ K+ +++I + + K L+ ++D L+K++++ Sbjct: 747 IQLQKKENTQYIKKILKNVTEIKGTKL-----LTNIFYDYEQKSLRMIVDQLKKELKNT- 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 I+++ + ++++ VT +LLD A+ + + Sbjct: 801 IIILINIINNRFTIIVGVTRNLLDYITAIKIMEM 834 >gi|227488808|ref|ZP_03919124.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542195|ref|ZP_03972244.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51866] gi|227091230|gb|EEI26542.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51867] gi|227182024|gb|EEI62996.1| alanyl-tRNA synthetase [Corynebacterium glucuronolyticum ATCC 51866] Length = 889 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 327/852 (38%), Positives = 481/852 (56%), Gaps = 66/852 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F + F GH +PS+SLI +DPTL+F N+GMVPFK F GQ+ P ++ T++ Sbjct: 6 IRERFTKHFVDAGHTPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQNPPFENGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT D Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWTLLTGSQDEGGYG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA ++W+ G+ ++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPERLWVTVYLDDDEAAEIWRDKIGVPEERIQRLGMADNYWSMGIPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERM 233 G G G + RY+E+WNLVFMQ E + ++ F LPK +IDTGMG+ER+ Sbjct: 181 GPEY-GKDGGPVADDNRYLEVWNLVFMQNERGEGTGKDNFEILGPLPKKNIDTGMGVERI 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGN--NIVNHRVIVDHLRSSSFLIADGI 290 A +LQ N Y+ DL + +I A+E++TG Y EG+ + + RVI DH R++ +I DG+ Sbjct: 240 ACILQGVDNVYETDLLRPVIDAAERLTGSTYGEGSHEDDIRFRVIADHSRTAMMIILDGV 299 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P NEGRGY+LRR++RR + ARLLG M + + M +YPE+ +A+ I Sbjct: 300 TPGNEGRGYILRRLLRRIIRSARLLGAKGNTMETFITTIMDTMTPSYPEIEKARERILTV 359 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +E++ F +TL+ G L + +S + GK EI +G+ AF L+DT+G P+D+ ++ Sbjct: 360 AVNEEKAFLRTLESGTELFEQEVSAVKGAGKTEI-SGEKAFTLHDTYGFPIDLTLEMARE 418 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +GL +D F+ + EQ++RA+A + G + + T+FIGYD L G Sbjct: 419 QGLT-VDEEGFHSFMAEQKARAKADNQAKKHGAADLTVYREFVDNHPTEFIGYDQLEG-- 475 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + P I L G GE + A G +VEV+ + TP YAEAGGQ Sbjct: 476 ----------ESPVIGLVAG-----------GEKIHSAKEGDEVEVIVEATPMYAEAGGQ 514 Query: 528 LGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 LGD G IGD L + DVQK + +++H + V G + L +D Q R Sbjct: 515 LGDRGTMTIGDAT-LNVNDVQKIGKKLWLHKSTVTAGGFEVGDTAALHVDEQWRHAARQA 573 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL LG Q GS P LRFD +++ +T +L+ IE N+ + + Sbjct: 574 HSATHLIHAALRQTLGPTAVQAGSMNKPGYLRFDFNYAQALTPKQLEEIERITNEAVDTD 633 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T M E+A A GA AL G Y D VRVV + GG S LCGGTHV+ + +I Sbjct: 634 WTVNTNEMPLEEAKAMGAMALFGENYGDIVRVVEI----GGPFSMELCGGTHVARSAQIG 689 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + ++ ESS+ +G+RRIEA +G + S+L + + LA+ LK ++ R+ ++ E+ Sbjct: 690 PVAVLGESSVGSGVRRIEAYSGLNSFSYLSKERSLAEGLATALKTPSDDLPERIAQLTEK 749 Query: 767 Y----RKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISE-VDSKELKSVMDALQKK 819 ++++ +HAK L V L S K ++ + E V +K+L+++ L + Sbjct: 750 LKAAEKEIENLHAK-ALADRVGALVDSAKKAGSFELIAENLGETVGAKDLRAMAQDLANR 808 Query: 820 IQ--SGIIMLVG 829 + S +++L G Sbjct: 809 LGSCSAVVVLGG 820 >gi|219681759|ref|YP_002468145.1| alanyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471461|ref|ZP_05635460.1| alanyl-tRNA synthetase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624602|gb|ACL30757.1| alanyl-tRNA synthetase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 878 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 316/878 (35%), Positives = 501/878 (57%), Gaps = 77/878 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF++ GH ++PSSSL+P ND TL+FTN+GM FK IF G++K Y V TVQ+ Sbjct: 8 IRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRVATVQR 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT K F++ Q + Sbjct: 68 CLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFNIPQNK 127 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCSEIFF 177 L+I+VY +D E +K+W I + +++IIRI ++NFW M +TGPCGPC+EIF+ Sbjct: 128 LWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPCTEIFY 187 Query: 178 DQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D + + + + R++EIWN+VF++F + +K + L SIDTGMGLER++ V Sbjct: 188 DYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLERISAV 247 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294 LQ +NY ID+F+ LI+ Q++ + NN+ ++ +VI DH+RS S++IAD ILP+N Sbjct: 248 LQNVYSNYHIDVFQKLIKNIAQLSSI----NNLDHISFQVIADHIRSCSYIIADNILPSN 303 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 E RGY+LRRI+RRA+ + +G + L+ ++ MG L + + IE L+ E Sbjct: 304 EHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVLKIE 363 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + +F TL++GL +L+ + + + IL+G AF LYDT G P+D+ D+ C ID Sbjct: 364 EMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDV-CREKNIKID 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE-DR 473 S+ A E+Q+ ++ + KF K + Sbjct: 422 YNSYELAKEKQKEQSNIN---------------------------------KKFYKNYNN 448 Query: 474 KVLCQKPPI--DLTNGVS-SIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 ++ I T ++ S+VK I + V + + +K + D+TPFY+E+GGQ+GD Sbjct: 449 NIILNDTCIFEGYTKTITRSLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGD 508 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G + +K + I H + G + SL ID R + +NHSAT Sbjct: 509 IGQLYHKKSSFIVEKTKKYGKTI-GHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSAT 567 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH L ILG + Q GS +T LRFD ++ K I +++++ IE+ +N I N+ + Sbjct: 568 HLLHATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIK 627 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +N E+A A AL +Y VRVV + S LCGGTH TG+I L I Sbjct: 628 TEELNLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKI 682 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV----------VGRV 760 +S+SS+ +GI+RIEA+TGQ+A +L +D +K ++ L S ++ + Sbjct: 683 ISQSSVASGIKRIEAVTGQKAIDYLHEKDNYIKDISFLLNCSTVDIKEKTKKLTIKTKNL 742 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E+ + +K + +K+ NV ++ K+ +++I + + K L+ ++D L+K++ Sbjct: 743 EKKIIQLQKKENTQYIKKILKNVTEIKGTKL-----LTNIFYDYEQKSLRMIVDQLKKEL 797 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 ++ I+++ + ++++ VT +LLD A+ + + Sbjct: 798 KNT-IIILINIINNRFTIIVGVTRNLLDYITAIKIMEM 834 >gi|219682314|ref|YP_002468698.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622047|gb|ACL30203.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086140|gb|ADP66222.1| alanyl-tRNA synthetase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086713|gb|ADP66794.1| alanyl-tRNA synthetase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087298|gb|ADP67378.1| alanyl-tRNA synthetase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087809|gb|ADP67888.1| alanyl-tRNA synthetase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 878 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 315/874 (36%), Positives = 501/874 (57%), Gaps = 69/874 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF++ GH ++PSSSL+P ND TL+FTN+GM FK IF G++K Y V TVQ+ Sbjct: 8 IRQDFLKFFKEKGHMIIPSSSLVPYNDSTLLFTNAGMNQFKEIFLGEKKSNYPRVATVQR 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R GGKHNDL+NVG T++HHTFFEMLGNFSFG YFK++AI+ AW+LLT K F++ Q + Sbjct: 68 CLRTGGKHNDLENVGYTSKHHTFFEMLGNFSFGDYFKKQAIEYAWELLTSKKWFNIPQNK 127 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCSEIFF 177 L+I+VY +D E +K+W I + +++IIRI ++NFW M +TGPCGPC+EIF+ Sbjct: 128 LWISVYKDDTETYKIWNDIIKIPSERIIRIGDKNKEKYNSENFWQMGDTGPCGPCTEIFY 187 Query: 178 DQGECIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 D + + + + R++EIWN+VF++F + +K + L SIDTGMGLER++ V Sbjct: 188 DYSDTMKIDPIEFLENKNGRFVEIWNIVFIEFNRISKTKIISLKNKSIDTGMGLERISAV 247 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPAN 294 LQ +NY ID+F+ LI+ Q++ + NN+ ++ +VI DH+RS S++IAD ILP+N Sbjct: 248 LQNVYSNYHIDVFQKLIKNIAQLSSI----NNLDHISFQVIADHIRSCSYIIADNILPSN 303 Query: 295 EGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSE 354 E RGY+LRRI+RRA+ + +G + L+ ++ MG L + + IE L+ E Sbjct: 304 EHRGYILRRIIRRALRHGHKIGIKKNFFHKLVSSVIHVMGKTGDILKEKQEKIENVLKIE 363 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGID 414 + +F TL++GL +L+ + + + IL+G AF LYDT G P+D+ D+ C ID Sbjct: 364 EMQFSYTLEKGLKILNSEIEKID-NNILSGKTAFYLYDTFGFPIDLTSDV-CREKNIKID 421 Query: 415 IISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 S+ A E+Q+ + S +K + + +L + + K Sbjct: 422 YNSYELAKEKQKEQ---------SNINKKFY---------KNYNNNIILNDTCIFEGYTK 463 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 + + S+VK I + V + + +K + D+TPFY+E+GGQ+GD G Sbjct: 464 TITR-----------SLVKYIFVNNQSVSKIIKDEKGVIFLDKTPFYSESGGQIGDIGQL 512 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + +K + I H + G + SL ID R + +NHSATHLLH Sbjct: 513 YHKKSSFIVEKTKKYGKTI-GHIGKLISGQITLNDSLFSHIDEDYRYAIQLNHSATHLLH 571 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 L ILG + Q GS +T LRFD ++ K I +++++ IE+ +N I N+ + T + Sbjct: 572 ATLRKILGDSIVQKGSLVTNTYLRFDFSYVKSIDTSQIQKIENIINTNIRNNIKIKTEEL 631 Query: 655 NREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSES 714 N E+A A AL +Y VRVV + S LCGGTH TG+I L I+S+S Sbjct: 632 NLEEAKKKKAMALFDDQYGSIVRVVFI-----NNFSIELCGGTHTQRTGDIGLFKIISQS 686 Query: 715 SIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV----------VGRVEEIW 764 S+ +GI+RIEA+TGQ+A +L +D +K ++ L S ++ +E+ Sbjct: 687 SVASGIKRIEAVTGQKAIDYLHEKDNYIKDISLLLNCSTVDIKEKTKKLTIKTKNLEKKI 746 Query: 765 EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 + +K + +K+ NV ++ K+ +++I + + K L+ ++D L+K++++ Sbjct: 747 IQLQKKENTQYIKKILKNVTEIKGTKL-----LTNIFYDYEQKSLRMIVDQLKKELKNT- 800 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 I+++ + ++++ VT +LLD A+ + + Sbjct: 801 IIILINIINNRFTIIVGVTRNLLDYITAIKIMEM 834 >gi|146321099|ref|YP_001200810.1| alanyl-tRNA synthetase [Streptococcus suis 98HAH33] gi|145691905|gb|ABP92410.1| Alanyl-tRNA synthetase [Streptococcus suis 98HAH33] Length = 830 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 326/861 (37%), Positives = 479/861 (55%), Gaps = 73/861 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M N+SS IR +L+F++ GH + PS++L+P NDPTL++ NSG+ K F G P Sbjct: 1 MKNLSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ AI+ ++LLT Sbjct: 61 PRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 F + +LY+T Y +D +++ W + G+ +I + DNFW + GP GP +EIF Sbjct: 117 WFAFPKDKLYMTYYPDDMDSYNRWIAL-GVEPSHLIPL--EDNFWEIG-AGPSGPDTEIF 172 Query: 177 FDQG-----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMSIDTGM 228 FD+G E I L E +RYIEIWN+V QF + E LP +IDTG Sbjct: 173 FDRGTDFDPENIGIRLLEEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGA 232 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLI 286 GLER+A + Q N++ DLF +I+ E+++G Y+ G+N+ + +VI DH+R+ SF I Sbjct: 233 GLERLAAIFQGAKTNFETDLFLPIIREVEKISGKTYDQDGDNM-SFKVIADHIRALSFAI 291 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP NEGRGYVLRR++RRA + + LG TEP + L+ + M S YPE+++ + Sbjct: 292 GDGALPGNEGRGYVLRRLLRRASMHGQRLGITEPFLYKLVETVGNIMESYYPEVLEKRAF 351 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQD 403 IE+ ++SE+E F +T+ G + ++ L GK EI D+ FKLYDT+G +++ ++ Sbjct: 352 IEKIVKSEEESFARTIHTGSQFAEQLMDKLAAEGKSEIDGRDI-FKLYDTYGFQVELTEE 410 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDL 462 + RG+ +DI F A++EQ+ RARA + GS G + ++ E+ +T G Sbjct: 411 LAEHRGMT-LDIAGFEAAMKEQQDRARASVVKGGSMGMQNETLAAITEE--STFVYGQTA 467 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L S +S IV + EAVS + +VFDQTPFYA Sbjct: 468 LEAS---------------------LSVIVADNART-----EAVSEGQALLVFDQTPFYA 501 Query: 523 EAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 E GGQ+ D G A GD I + DVQK G +H + I + L I+ + Sbjct: 502 EMGGQVADHGFVKNATGD-IVATVIDVQKAPNGQPLHTVELSASI-SVGQTYTLEIETKR 559 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ + NH+ATHLLH AL I+G H +Q GS D LRFD TH + +T+ EL+ IE+ V Sbjct: 560 RKGVEKNHTATHLLHAALHNIIGEHATQAGSLNEQDFLRFDFTHFEAVTAEELRRIEEEV 619 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ I +PVVT + + A GA AL G KY VRVV++ G +S LCGGTHV Sbjct: 620 NEQIWNAIPVVTVETDIDTAKEMGAMALFGEKYGKEVRVVTI-----GDYSVELCGGTHV 674 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVG 758 +T EI + I+ E I +G RRI A+TG+ A Q++ LK +A+ +K Q V Sbjct: 675 GNTAEIGIFKILKEEGIGSGTRRIIAVTGREAFLAYRDQEDALKEVAATIKSPQIKEVPN 734 Query: 759 RVEEIWEEYRKLQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEV---DSKELKSVM 813 +VE + ++ R LQ +A K + + D N + +I S+V D+ L++ Sbjct: 735 KVESLAQQVRDLQKENAALKEKAAAAAAGDVFKNVKDANGIRYIASQVQVSDAGALRTFA 794 Query: 814 DALQKKIQSGIIMLVGISKEK 834 D ++K S +++LV +K Sbjct: 795 DNWKQKDYSDVLVLVAAIGDK 815 >gi|226366325|ref|YP_002784108.1| alanyl-tRNA synthetase [Rhodococcus opacus B4] gi|226244815|dbj|BAH55163.1| alanyl-tRNA synthetase [Rhodococcus opacus B4] Length = 890 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 309/779 (39%), Positives = 434/779 (55%), Gaps = 53/779 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K H +PS+SLI +DP L+F N+GMV F F GQ+ P Y T+VQK Sbjct: 6 IRRRFLDHFVKAAHTEVPSASLI-LDDPNLLFVNAGMVQFVPFFLGQQTPPYPRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 CVR D++NVG T RH+TFF+M GNFSFG YFK AI+ AW LLT D D Sbjct: 65 CVRT----LDIENVGITTRHNTFFQMAGNFSFGDYFKRDAIKHAWALLTSSVDDGGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R+++TVY +D+EA +W+ G+ +I R DN+WSM GPCGPCSEI+FD+G Sbjct: 121 PERIWVTVYLDDDEARDIWRDEVGVPETRIQRRGMADNYWSMGIPGPCGPCSEIYFDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMAT 235 G G + +RYIEIWNLVFMQ E + N + LPK +IDTGMG+ER+A Sbjct: 181 EF-GAEGGPEADEDRYIEIWNLVFMQNERGLGISKDNFEILGPLPKQNIDTGMGVERVAF 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 +LQ N Y+ DL + +I +E+++G KY + ++ V RVI DH R+++ LIADG+ P Sbjct: 240 LLQGVDNVYETDLVRPVIAKAEELSGRKYGVDHDDDVRFRVIADHARTAAMLIADGVNPG 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N+GRGYVLRR++RR + A+LLG +P M + + M +YP L IE Sbjct: 300 NDGRGYVLRRLLRRIVRSAKLLGADKPSMREFITVVRDTMAPSYPVLDTDFGRIETVAVG 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 E+ F KTL G L +G + GK I G+ AF L+DT+G P+D+ ++ GL Sbjct: 360 EEAAFLKTLTSGSKLFEGAAESVKASGKSTI-GGEQAFALHDTYGFPIDLTLEMAAEAGL 418 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 +D F + EQR RA+ + + + G T+F G+ L Sbjct: 419 T-VDEEGFRALMAEQRQRAKDDAQARKHAHADLTIYKELLDRGPTEFTGFHELVSEAH-- 475 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 V A++ QG+ V A +GQ VEV+ D++P YAEAGGQ+ D Sbjct: 476 ---------------------VLALISQGQRVPVATAGQDVEVILDRSPLYAEAGGQIAD 514 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHSA 589 G G G+R+++ DVQK A+ ++VH V+ G + TE +VL +D R+ + HS Sbjct: 515 LGTLTGPGLRVKVNDVQKIAKKLWVHKVTVQDGQI-TEGDVVLAQVDAAWRKGATQGHSG 573 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 TH++H AL +LG + Q GS P LRFD + +T A+ + IE N+ +A + V Sbjct: 574 THMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALTEAQKQDIEVVANEAVAADYSV 633 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 T + + + A + GA AL G Y D VRVV + GG S LCGGTHV S+ +I + Sbjct: 634 NTFVTDLDKAKSMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSSQIGNVT 689 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++ E S+ +G+RR+EA G + +L + L L+S LKV V RVE + E R Sbjct: 690 LLGEQSVGSGVRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVERLR 748 >gi|254571161|ref|XP_002492690.1| Cytoplasmic alanyl-tRNA synthetase [Pichia pastoris GS115] gi|238032488|emb|CAY70511.1| Cytoplasmic alanyl-tRNA synthetase [Pichia pastoris GS115] Length = 981 Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust. Identities = 334/972 (34%), Positives = 517/972 (53%), Gaps = 106/972 (10%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59 + +R+TF +FF+ H +PSSS+IP +DPTL+FTN+GM +K IF G P + Sbjct: 34 NKVRSTFFDFFKSKDHTYVPSSSVIPYDDPTLLFTNAGMNQYKPIFLGTVDPSSDFATLK 93 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI W+LLTK + Sbjct: 94 RATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGYGWELLTKVYG 153 Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L++ RLY++ + + D EA + WK + G++ D I+ + DNFW M + GPCGP Sbjct: 154 LEKERLYVSYFGGDAGLGLEPDLEAKEYWKAL-GVAEDHILPGSVEDNFWEMGDQGPCGP 212 Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ GG +S ++ +EIWN+VF+QF ++ LP IDTGM Sbjct: 213 CSEIHYDR----IGGRNAASLVNQDDPDVLEIWNIVFIQFNREADGSLKPLPSKHIDTGM 268 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNN--------IVNHRVIVDHL 279 G ER+ ++LQ +NYD D+F L +++TG++ Y G+ +RV+ DH+ Sbjct: 269 GFERLVSILQNVRSNYDTDVFDPLFTKIQEITGVRPYSGHFGKEDMDGIDTAYRVLADHV 328 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAY 337 R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L PAL ++ + Sbjct: 329 RTLTFSLADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGKFFSQLAPALIEQVKETF 388 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHG 395 PE+ + I E L E+ F +TLDRG L + +++ ++ L G ++LYDT+G Sbjct: 389 PEVDKNFDTIAEILDEEEASFSRTLDRGERLFEQYAIIASKTPEQTLAGRDVWRLYDTYG 448 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + GL ID F A E R ++ G+G T+ KE Sbjct: 449 FPVDLTRLMAEETGLK-IDDEGFEIAKEASREASK------GNGKTQG-----KELVKLD 496 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVE 512 + +L + S+ K D T + + + AI E+++ E Q++ Sbjct: 497 VHVLGELEKNSEVPKTDDSYKYG------TKNIEASIVAIYNGKELIQSTSEVADDQQLG 550 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 ++ D+TPFYAE GGQ+ DTG + DG+ + +VQ A G +H VE G+L + Sbjct: 551 ILLDKTPFYAEQGGQIYDTGKIVIDGVAEFNVENVQSYA-GYVLHTGYVEEGVLSVSDKI 609 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H K +T +E Sbjct: 610 IAGYDELRRWPIKNNHTGTHILNFALRDVLGDDVEQKGSLVAPEKLRFDFSHKKALTLSE 669 Query: 632 LKSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVSV------ 681 L+ +ED N++I +N+PV VT + +E +G A+ G Y D VRVVS+ Sbjct: 670 LQKVEDISNEVIKKNVPVFASDVTLAVGKE---INGLRAVFGETYPDPVRVVSIGVPVEE 726 Query: 682 ---EYEDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736 + H++++ CGGTHV+ TG+I I+ ES I GIRRI A+T A + Sbjct: 727 LVKNPSNAEWHNASIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTSTEAHTVQR 786 Query: 737 GQDEKLKSLASFLKVSQGNVV-GRVEEIWEEYRKLQL-IHAKRKLQL---NVE-----DL 786 EK L + K+S G +++E KLQ+ + AK L+ N+E +L Sbjct: 787 IAREKNDQLDAIAKMSFGEAKEKKLKEFNVALGKLQISVLAKNDLKTKFTNIEKVVKDEL 846 Query: 787 SCHKIADVN------------------FMSHIISEVDSKELKSVMDALQKKI-QSGIIML 827 + A+ F++H+ ++K L ++K+I + ++ Sbjct: 847 KVRQKAESKKTLDTVKDYFNEHEDSPFFVAHVPVSSNAKLLTEAFSYIKKEIPDKSLYLI 906 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 VG E K + V+++ L + A ++ ++++ +GG GG + ++ Q G N + Sbjct: 907 VGNESEPKIAQGCYVSDNALSKGVVASEVTNVASEFIGGKAGG-KGNICQGVGTNPEGIN 965 Query: 887 QAIAGVASFLKK 898 +AI V LK+ Sbjct: 966 KAIEAVTKILKE 977 >gi|226306472|ref|YP_002766432.1| alanyl-tRNA synthetase [Rhodococcus erythropolis PR4] gi|226185589|dbj|BAH33693.1| alanyl-tRNA synthetase [Rhodococcus erythropolis PR4] Length = 890 Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust. Identities = 310/780 (39%), Positives = 434/780 (55%), Gaps = 55/780 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+SLI +DP L+F N+GMVPF F GQ+ P Y T+VQK Sbjct: 6 IRRRFLDHFVKAGHTEVPSASLI-LDDPNLLFVNAGMVPFVPFFLGQQTPSYSRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR D++ VG T RH+TFF+M GNFSFG YFK+ AI AW LLT + +D Sbjct: 65 CVRT----LDIEEVGITTRHNTFFQMAGNFSFGDYFKKEAISHAWQLLTGSVEDGGYGID 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ TVY +D+EAF +W+ G+ ++I R DN+WSM GPCGPCSEIF+D+G Sbjct: 121 PTRLWATVYLDDDEAFSIWRDEVGVPEERIQRRGMKDNYWSMGIPGPCGPCSEIFYDRGA 180 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E+ NK + IL PK +IDTGMG+ER+A Sbjct: 181 EY--GVEGGPEADEDRYIEIWNLVFMQNERGEGTNKGDYPILGPLPKKNIDTGMGVERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILP 292 +LQ N Y+ DL + +I + ++TG Y ++ V RVI DH R+++ LIADG+ P Sbjct: 239 FLLQGVENVYETDLLRPVIDKAAELTGSVYGTDHTSDVRFRVIADHARTAAMLIADGVNP 298 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 N GRGYVLRR++RR + A+LLG +P M + + M +YP L IE Sbjct: 299 GNYGRGYVLRRLLRRIVRSAKLLGSEQPTMREFMIVVRDTMAPSYPVLETDFTRIENVAV 358 Query: 353 SEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E+ F KTL G L + + GK ++ GD AF L+DT+G P+D+ ++ G Sbjct: 359 GEETAFLKTLASGSALFENAAETVKSSGK-SVIAGDQAFALHDTYGFPIDLTLEMASEAG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D F + EQR RA+ + + + GAT+F G+D L Sbjct: 418 LT-VDEDGFRTLMAEQRKRAKDDAQARKHAHADLTVYKELLDRGATEFTGFDELVSEAH- 475 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 V A++ G V A +GQ VEV+ D++P YAE+GGQ+ Sbjct: 476 ----------------------VLALIVDGVRVPVAKAGQDVEVILDRSPLYAESGGQIA 513 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHS 588 D G G+ ++ DVQK A+ ++ H V++G + TE +VL +D + R+ + HS Sbjct: 514 DIGSLTAPGLEAKVNDVQKIAKKVWTHKVTVQKGEI-TEGDVVLAHVDAEWRKGATQGHS 572 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 TH++H AL +LG + Q GS P LRFD + ++ ++ + IE N+ +A N Sbjct: 573 GTHMVHAALRQVLGPNAVQAGSLNKPGYLRFDFSWQGALSDSQKQDIEALTNEAVASNYA 632 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + + + A A GA AL G Y D VRVV + GG S LCGGTHV S+ +I + Sbjct: 633 VNTFVTDLDKAKAMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVGSSAQIGQV 688 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++ E S+ +GIRR+EA G + +L + L L+S LKV V RVE + E + Sbjct: 689 TLLGEQSVGSGIRRVEAYVGLDSYRYLAKERALLAGLSSSLKVPSEEVPARVEALVERLK 748 >gi|227875429|ref|ZP_03993570.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35243] gi|227843983|gb|EEJ54151.1| alanine--tRNA ligase [Mobiluncus mulieris ATCC 35243] Length = 894 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 306/880 (34%), Positives = 470/880 (53%), Gaps = 58/880 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L++F NGHE+ PS SLI DP+++FT +GMVPF G E + T+ Sbjct: 3 TAEIRQRWLDYFAANGHEVRPSVSLI-SPDPSILFTIAGMVPFIPYIVGTETAPWPRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-----EF 118 VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT ++ Sbjct: 62 VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKYAWDLLTGSIAEGKY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD ++++T+++ED+EA+++W K GL I ++ + FW + GP G C+EI +D Sbjct: 118 GLDGDKIWVTIWEEDQEAWRIWTKEIGLDPTHIQKLPREEIFWDTGQPGPAGACAEIHYD 177 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232 +G + P G P +G+R++E+WNLVF +F E + K + L + +IDTG+GLER Sbjct: 178 RGSDYGPDGGPEVDAQGDRFLELWNLVFDEFLRGEGKGKNYPLLGKLDQTAIDTGLGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADG 289 +A +LQ+K N Y+ID +IQ +++++G KY + V+ RV+ DH+RS+ LI DG Sbjct: 238 LAFLLQDKDNMYEIDEVFPVIQVAQELSGRKYTSSAEAMDVHFRVVADHVRSALMLIGDG 297 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+NEGRGYVLRR+MRRA+ RLLG E +M LLPA M +YPEL I + Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVQEAVMPQLLPASMQVMKDSYPELQSNWDTISD 357 Query: 350 TLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E++ F +TLD G V+LD V L+G+ AF+L+DT+G PL + +I A Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKAAGVALSGEDAFQLHDTYGFPLSLTLEI-AAE 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYGAT---QFIGYDLLR 464 +D F + + EQ+ RARA ++ +G + ++ L EK G T +F+GY Sbjct: 417 AKVKVDEKRFTELMNEQKQRARADAVAKKTGHVDAHVYKELAEKLGKTKTVEFLGY---- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q G+ V A + +EV+ D+TPFYAEA Sbjct: 473 -------------------TETSAPAKVIGILQDGKPVPAASAPATIEVLLDRTPFYAEA 513 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G + G + DVQ +G+ +H + G + TID + R + Sbjct: 514 GGQLADQGRITLAGGGVFDVADVQAPVKGLPMHRGTLHEGGITLGEDAQATIDIERRGAI 573 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H++TH++H L LG +Q GS P +RFD +SKP+++ L+ +E N+ + Sbjct: 574 ARAHTSTHVIHQLLLDRLGDGATQAGSEDAPWHVRFDFRNSKPLSNEMLQDVEAEANERL 633 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 NL V+ M E+A +GA A+ G KY VR+V + G S CGGTHV TG Sbjct: 634 RANLEVIDYEMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSKEFCGGTHVPLTG 689 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I L ++ E S+ +G+RRIEA+ G A + + + + + ++V R+ + Sbjct: 690 AIGSLMVLGEGSVGSGVRRIEALVGDGAAGYQAKEHALVSQVTQLVGARPEDLVERITSM 749 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLS-----CHKIADVNFMSHIISEVDSKELKSVMDALQK 818 E + + K +L + +L I F+ +S +L+ L+ Sbjct: 750 MERLKAAEKELEKTRLAALLSNLDNYVALAQNICGTKFICQSVSAGSVDDLRQAATQLRG 809 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL 858 + ++V + + K ++VV + R V L Sbjct: 810 RFSKTESVVVALGAKIKEKPMMVVATNEAAREKGVKAGAL 849 >gi|312139552|ref|YP_004006888.1| alanine-tRNA ligase alas [Rhodococcus equi 103S] gi|311888891|emb|CBH48204.1| alanine-tRNA ligase AlaS [Rhodococcus equi 103S] Length = 890 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 302/781 (38%), Positives = 438/781 (56%), Gaps = 51/781 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+SLI +DP L+F N+GMV FK F GQ+ P Y T+VQK Sbjct: 6 IRRRFLDHFVKAGHTEVPSASLI-FDDPNLLFVNAGMVQFKPFFLGQQTPPYDTATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR G D++NVG T RH+TFF+M GNFSFG YFK AI+ AW LLT + D Sbjct: 65 CVRTG----DIENVGVTTRHNTFFQMAGNFSFGDYFKRGAIKHAWALLTNSVEDGGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY +D+EA +WK+ +G+ ++I R DN+WSM GPCGPCSEI++D+G Sbjct: 121 PERLWVTVYLDDDEARDIWKEEAGIPDERIQRRGMADNYWSMGVPGPCGPCSEIYYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMAT 235 G G + +RY+EIWNLVFMQ E + ++ F LPK +IDTGMG+ER+A Sbjct: 181 EY-GAEGGPEADEDRYLEIWNLVFMQNERGEGTGKDDFEILGPLPKQNIDTGMGVERVAF 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 +LQ N Y+ DL + +I +E+++G Y + V RVI DH R++ LIADG+ P Sbjct: 240 LLQGVDNVYETDLVRPVITKAEELSGRTYGTDPEADVRFRVIADHARTAVMLIADGVNPG 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RR + A+LLG +P M + + M +YPEL I Sbjct: 300 NEGRGYVLRRLLRRIIRSAKLLGAEKPSMREFVTVVRDTMSQSYPELATDFDRIVGVAVG 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ F +T+ G + + + ++ G+ AF L+DT+G P+D+ ++ GL+ Sbjct: 360 EETAFLRTIAAGSKMFEAEADEVKAAGRKVFGGNEAFVLHDTYGFPIDLTLEMAAEAGLS 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + EQR RA+ + T+ + GAT+F G++ L Sbjct: 420 -VDEDGFRSLMAEQRKRAKEDAQARKHAHTDLTVYKEFVDRGATEFTGFNELVSEAH--- 475 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A++ G V A +GQ VEV+ D++P YAE+GGQ+ D Sbjct: 476 --------------------VLALISNGVRVPAATAGQDVEVILDRSPLYAESGGQIADI 515 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHSAT 590 G +G+R+++ DVQK A+ ++VH V G + TE +VL +D + R+ + HS T Sbjct: 516 GTITANGLRVKVNDVQKIAKKVWVHKVSVTEGQI-TEGDVVLVQVDPEWRKGATQGHSGT 574 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H++H AL +LG + Q GS P LRFD ++ ++ + IE N+ +A N V Sbjct: 575 HMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSESQKQEIEVVTNEAVAANHAVN 634 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T + + + A GA AL G Y D VRVV + GG S LCGGTHV ++ +I + + Sbjct: 635 TFVTDLDKAKQMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVQTSAQIGPVTL 690 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 + ESS+ +G+RR+EA G + +L + L +AS LKV V GRVE + E + Sbjct: 691 LGESSVGSGVRRVEAFVGLDSYRYLAKERALLAGVASSLKVPSEEVPGRVEALVERLKAA 750 Query: 771 Q 771 + Sbjct: 751 E 751 >gi|328353302|emb|CCA39700.1| alanyl-tRNA synthetase [Pichia pastoris CBS 7435] Length = 959 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 334/972 (34%), Positives = 517/972 (53%), Gaps = 106/972 (10%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59 + +R+TF +FF+ H +PSSS+IP +DPTL+FTN+GM +K IF G P + Sbjct: 12 NKVRSTFFDFFKSKDHTYVPSSSVIPYDDPTLLFTNAGMNQYKPIFLGTVDPSSDFATLK 71 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI W+LLTK + Sbjct: 72 RATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIGYGWELLTKVYG 131 Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L++ RLY++ + + D EA + WK + G++ D I+ + DNFW M + GPCGP Sbjct: 132 LEKERLYVSYFGGDAGLGLEPDLEAKEYWKAL-GVAEDHILPGSVEDNFWEMGDQGPCGP 190 Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ GG +S ++ +EIWN+VF+QF ++ LP IDTGM Sbjct: 191 CSEIHYDR----IGGRNAASLVNQDDPDVLEIWNIVFIQFNREADGSLKPLPSKHIDTGM 246 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNN--------IVNHRVIVDHL 279 G ER+ ++LQ +NYD D+F L +++TG++ Y G+ +RV+ DH+ Sbjct: 247 GFERLVSILQNVRSNYDTDVFDPLFTKIQEITGVRPYSGHFGKEDMDGIDTAYRVLADHV 306 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAY 337 R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L PAL ++ + Sbjct: 307 RTLTFSLADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGKFFSQLAPALIEQVKETF 366 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHG 395 PE+ + I E L E+ F +TLDRG L + +++ ++ L G ++LYDT+G Sbjct: 367 PEVDKNFDTIAEILDEEEASFSRTLDRGERLFEQYAIIASKTPEQTLAGRDVWRLYDTYG 426 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + GL ID F A E R ++ G+G T+ KE Sbjct: 427 FPVDLTRLMAEETGLK-IDDEGFEIAKEASREASK------GNGKTQG-----KELVKLD 474 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVE 512 + +L + S+ K D T + + + AI E+++ E Q++ Sbjct: 475 VHVLGELEKNSEVPKTDDSYKYG------TKNIEASIVAIYNGKELIQSTSEVADDQQLG 528 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 ++ D+TPFYAE GGQ+ DTG + DG+ + +VQ A G +H VE G+L + Sbjct: 529 ILLDKTPFYAEQGGQIYDTGKIVIDGVAEFNVENVQSYA-GYVLHTGYVEEGVLSVSDKI 587 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H K +T +E Sbjct: 588 IAGYDELRRWPIKNNHTGTHILNFALRDVLGDDVEQKGSLVAPEKLRFDFSHKKALTLSE 647 Query: 632 LKSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVSV------ 681 L+ +ED N++I +N+PV VT + +E +G A+ G Y D VRVVS+ Sbjct: 648 LQKVEDISNEVIKKNVPVFASDVTLAVGKE---INGLRAVFGETYPDPVRVVSIGVPVEE 704 Query: 682 ---EYEDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736 + H++++ CGGTHV+ TG+I I+ ES I GIRRI A+T A + Sbjct: 705 LVKNPSNAEWHNASIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTSTEAHTVQR 764 Query: 737 GQDEKLKSLASFLKVSQGNVV-GRVEEIWEEYRKLQL-IHAKRKLQL---NVE-----DL 786 EK L + K+S G +++E KLQ+ + AK L+ N+E +L Sbjct: 765 IAREKNDQLDAIAKMSFGEAKEKKLKEFNVALGKLQISVLAKNDLKTKFTNIEKVVKDEL 824 Query: 787 SCHKIADVN------------------FMSHIISEVDSKELKSVMDALQKKI-QSGIIML 827 + A+ F++H+ ++K L ++K+I + ++ Sbjct: 825 KVRQKAESKKTLDTVKDYFNEHEDSPFFVAHVPVSSNAKLLTEAFSYIKKEIPDKSLYLI 884 Query: 828 VGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 VG E K + V+++ L + A ++ ++++ +GG GG + ++ Q G N + Sbjct: 885 VGNESEPKIAQGCYVSDNALSKGVVASEVTNVASEFIGGKAGG-KGNICQGVGTNPEGIN 943 Query: 887 QAIAGVASFLKK 898 +AI V LK+ Sbjct: 944 KAIEAVTKILKE 955 >gi|311064194|ref|YP_003970919.1| alanyl-tRNA synthetase AlaS [Bifidobacterium bifidum PRL2010] gi|310866513|gb|ADP35882.1| AlaS Alanyl-tRNA synthetase [Bifidobacterium bifidum PRL2010] Length = 892 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 342/922 (37%), Positives = 511/922 (55%), Gaps = 78/922 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P ++ + + Sbjct: 3 TSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT + Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQSEGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T Y +DEEA +WK G + + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWVTTYTDDEEARSIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLE 231 +G E G P + E R+IEIW+LVF +E N + + L + +IDTG GLE Sbjct: 177 RGPEYGKDGGPAADET--RFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 R+A ++Q K N Y+ D +I+A+EQ++G KY + V RV+ DH+RS+ +++DG Sbjct: 235 RLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+N GRGYVLRR++RR + R+LG TEP++ HLLP M ++YPEL + + E Sbjct: 295 VRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVSE 354 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + E++ F +TLD G+ +LD ++ K D +++GD AF L+DT+G P+++ ++ Sbjct: 355 SAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAAD 414 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +G+ +D F + + EQ+SRARA +L K+++ + D Sbjct: 415 QGVK-VDEAKFRELMSEQKSRARADAL--------------KKRHNVDLSVYDDF----- 454 Query: 468 FMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYA 522 +K L Q PID V I+Q+G+ AVS VEV+ D+TPFYA Sbjct: 455 -----KKTLVQ--PIDFLGYTDMSARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYA 507 Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 EAGGQL D G + D G L++ DVQK + + VH + G L + +ID R Sbjct: 508 EAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLAVGTEVSASIDLARRG 567 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ +H+ATH++H AL LG +Q GS P+ LRFD S + + ++E VND Sbjct: 568 AIARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVND 627 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + NL V T M +DAIA GA L G KY D VRVVS+ EDG S LCGGTHV Sbjct: 628 RLRDNLIVTTTEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDH 684 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 G+I + I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 685 VGKIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVN 744 Query: 762 ----EIWEEYRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKEL--KSV 812 ++ E R+L ++ + +L +V L + A V + + S + K+V Sbjct: 745 TLLAKLKESDRRLAAMY-EGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTV 803 Query: 813 MDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDRFNAV---DLARLSAKVLGGGG 867 MD + + ++ L G+S++ K V + E + R N + DL R ++K+L GGG Sbjct: 804 MDVRAQLGEDAPVVVALAGVSEDDKPMVAVATNE--VARKNGIKAGDLVRGASKML-GGG 860 Query: 868 GGGRPHMAQSGGPNGNKADQAI 889 GGG+P AQ GG + ++ D+A+ Sbjct: 861 GGGKPDFAQGGGSDASRIDEAL 882 >gi|27904852|ref|NP_777978.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427399|sp|P59420|SYA_BUCBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|27904250|gb|AAO27083.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 880 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 313/866 (36%), Positives = 483/866 (55%), Gaps = 62/866 (7%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-YQAVTTVQKCVR 69 FL FF K GH +LP S+LIP NDP+L+FTNSGM FK+IF + Y VTT+Q C+R Sbjct: 12 FLNFFYKKGHTILPGSTLIPNNDPSLLFTNSGMNQFKDIFIQKNYNFKYNRVTTLQNCLR 71 Query: 70 AGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRRLYI 127 GGKHND +NVG T +HHTFF+MLGNFSF YFK AI AW LT ++ +L + +L+I Sbjct: 72 TGGKHNDFENVGYTPQHHTFFQMLGNFSFRDYFKLDAILYAWKFLTSKEQLNLSKEKLWI 131 Query: 128 TVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSEIFFDQGE 181 TVY +D E++ +WK I + KII+I + +DNFW M E GPCGPC+EIF+D G Sbjct: 132 TVYQDDLESYNIWKNIIKIDKHKIIKIGNKYNSSDSDNFWQMGEIGPCGPCTEIFYDYGN 191 Query: 182 CIPGGLPGSSE-EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEK 240 +PG +PG++ R++EIWN+VF+QF + + + L + +DTGMGLER++ V+ Sbjct: 192 TLPGTIPGNNGCNVPRFVEIWNIVFIQFNKLSNGKLIKLTESYVDTGMGLERISAVINNV 251 Query: 241 TNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 T+NY+IDLFK LI+ +++ + N + VI DH+R+ SF+I++ I+P+NE GYV Sbjct: 252 TSNYEIDLFKPLIKHILELSTVNTPKNKSI--YVIADHIRACSFIISENIIPSNEKHGYV 309 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRRI+RRA+ + LG + L+P L MG P L + + IE L+ E+++F + Sbjct: 310 LRRIIRRAIRHGHNLGIKSLFLHKLIPTLINTMGKFNPVLKKQQNKIENVLKLEEQKFIE 369 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 TL++GL LL L + +L+G +AF LYDT G P+D+ DI C I+I+ F + Sbjct: 370 TLEKGLKLLHKELKQIQPKHVLSGKLAFNLYDTFGFPIDLTIDI-CKEHNISINIMEFKR 428 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 L + + + + T + T F+GY Sbjct: 429 YLNQHKQNSINKNF---LNTRNAYYIEDNNINIKTHFVGYQF------------------ 467 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF-DQTPFYAEAGGQLGDTGCAIGDGI 539 N SI+ I+ + ++ + ++F ++TPFY E+GGQ+GD+G I + Sbjct: 468 -----NKTQSIINNIIIKNNKKTLQINDYQNSILFLNETPFYGESGGQIGDSGI-IHNKT 521 Query: 540 RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALST 599 I + K I H + G L ++ I+ R+ + INH+ATHLLH +L Sbjct: 522 GKFIVNCTKMFGNIIGHVGTLASGYLNIHDTVCAEINLPKRKSIQINHTATHLLHASLRK 581 Query: 600 ILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA 659 ILG HV Q GS I+ L+FD +H+ P+ E++ +E+ +N I +N+ V T + ++ Sbjct: 582 ILGKHVFQKGSFISDQSLKFDFSHNAPMNLREIQEVENIINKKIQKNISVSTTLTTLQEI 641 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAG 719 AL KY D+VR++S+ S LCGGTH TG+I L I SE SI +G Sbjct: 642 QNKKVMALFQDKYKDKVRMISI-----NDFSVELCGGTHTKYTGDIGLFKITSEISISSG 696 Query: 720 IRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL 779 IRRIEA+TG+ A S + Q++ + ++A+ L N+ + ++ IH K+++ Sbjct: 697 IRRIEAVTGKHAISIIHHQEKTINNIANMLNSKTNNIEQTITKLLNNN-----IHLKKQI 751 Query: 780 QL--------NVEDLSCHK--IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 V LS H I DVN + + + L++++D L+ + + ++++ Sbjct: 752 YTLYNQNIYNIVNSLSKHNILIKDVNIIIKNLKNENLLSLRNIVDKLKNRFKCS-VIIIS 810 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDL 855 K+ +++ VT ++ DR +A+D+ Sbjct: 811 SIINNKSIIIVGVTRNVTDRISALDI 836 >gi|325672564|ref|ZP_08152260.1| alanine--tRNA ligase [Rhodococcus equi ATCC 33707] gi|325556441|gb|EGD26107.1| alanine--tRNA ligase [Rhodococcus equi ATCC 33707] Length = 890 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 302/781 (38%), Positives = 438/781 (56%), Gaps = 51/781 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+SLI +DP L+F N+GMV FK F GQ+ P Y T+VQK Sbjct: 6 IRRRFLDHFVKAGHTEVPSASLI-FDDPNLLFVNAGMVQFKPFFLGQQTPPYDTATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR G D++NVG T RH+TFF+M GNFSFG YFK AI+ AW LLT + D Sbjct: 65 CVRTG----DIENVGVTTRHNTFFQMAGNFSFGDYFKRGAIKHAWALLTNSVEDGGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY +D+EA +WK+ +G+ ++I R DN+WSM GPCGPCSEI++D+G Sbjct: 121 PERLWVTVYLDDDEARDIWKEEAGIPDERIQRRGMADNYWSMGVPGPCGPCSEIYYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMAT 235 G G + +RY+EIWNLVFMQ E + ++ F LPK +IDTGMG+ER+A Sbjct: 181 EY-GAEGGPEADEDRYLEIWNLVFMQNERGEGTGKDDFEILGPLPKQNIDTGMGVERVAF 239 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPA 293 +LQ N Y+ DL + +I +E+++G Y + V RVI DH R++ LIADG+ P Sbjct: 240 LLQGVDNVYETDLVRPVITKAEELSGRTYGTDPEADVRFRVIADHARTAVMLIADGVNPG 299 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRR++RR + A+LLG +P M + + M +YPEL I Sbjct: 300 NEGRGYVLRRLLRRIIRSAKLLGAEKPSMREFVTVVRDTMSQSYPELATDFDRIVGVAVG 359 Query: 354 EDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ F +T+ G + + + ++ G+ AF L+DT+G P+D+ ++ GL+ Sbjct: 360 EETAFLRTIAAGSKMFEAEADEVKAAGRKVFGGNEAFVLHDTYGFPIDLTLEMAAEAGLS 419 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F + EQR RA+ + T+ + GAT+F G++ L Sbjct: 420 -VDEDGFRSLMAEQRKRAKEDAQARKHAHTDLTVYKEFVDRGATEFTGFNELVSEAH--- 475 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 V A++ G V A +GQ VEV+ D++P YAE+GGQ+ D Sbjct: 476 --------------------VLALISNGVRVPTATAGQDVEVILDRSPLYAESGGQIADI 515 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT-IDYQNRRQLSINHSAT 590 G +G+R+++ DVQK A+ ++VH V G + TE +VL +D + R+ + HS T Sbjct: 516 GTITANGLRVKVNDVQKIAKKVWVHKVSVTEGQI-TEGDVVLVQVDPEWRKGATQGHSGT 574 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H++H AL +LG + Q GS P LRFD ++ ++ + IE N+ +A N V Sbjct: 575 HMVHAALRQVLGPNAVQAGSLNKPGYLRFDFNWQGQLSESQKQEIEVVTNEAVAANHAVN 634 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T + + + A GA AL G Y D VRVV + GG S LCGGTHV ++ +I + + Sbjct: 635 TFVTDLDKAKQMGAMALFGENYGDEVRVVEI----GGPFSMELCGGTHVQTSAQIGPVTL 690 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 + ESS+ +G+RR+EA G + +L + L +AS LKV V GRVE + E + Sbjct: 691 LGESSVGSGVRRVEAFVGLDSYRYLAKERALLAGVASSLKVPSEEVPGRVEALVERLKAA 750 Query: 771 Q 771 + Sbjct: 751 E 751 >gi|320093740|ref|ZP_08025599.1| exopolyphosphatase [Actinomyces sp. oral taxon 178 str. F0338] gi|319979325|gb|EFW10816.1| exopolyphosphatase [Actinomyces sp. oral taxon 178 str. F0338] Length = 918 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 309/832 (37%), Positives = 451/832 (54%), Gaps = 68/832 (8%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + S IR+ +LEFF HE+ PS LI +P+++FT +GMVPF G E + Sbjct: 19 LMRTSEIRSRWLEFFAARDHEIRPSVPLI-SPEPSILFTVAGMVPFIPYILGTEPAPWPR 77 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD- 119 +VQKCVR ND+DNVG+T RH TFF+M GNFSFG YFKE AI AW LLT D Sbjct: 78 AASVQKCVRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAIDFAWHLLTDPRDQ 133 Query: 120 ----LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 LD RL++T+++ED+ +F W + GL A++I R+ + WS + GP G C EI Sbjct: 134 GGYGLDGDRLWMTIWEEDQVSFDYWTREIGLPAERIQRLPFAEISWSTGQPGPAGSCCEI 193 Query: 176 FFDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMG 229 +D+G + PGG P G+R++EIWNLVF +F E + L + +IDTG G Sbjct: 194 HYDRGAQYGPGGGPVVDTGGDRFLEIWNLVFDEFVRGEGAGHDFELVGKLDRTAIDTGAG 253 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDH 278 LER+A ++Q+K N Y+ID +I A+E ++G Y + V RV+ DH Sbjct: 254 LERLAFIMQDKPNMYEIDEVFPVIAAAEAMSGKTYGLGAAGPEAGEAYADDVRLRVVADH 313 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYP 338 +RSS LI DG+ P N+GRGYVLRR++RRA+ RLLG + M LL A M ++YP Sbjct: 314 VRSSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVHDAAMPVLLTASKDAMRASYP 373 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLP 397 EL I E +E++ F +TL G +LD ++ + G AF L+DT+G P Sbjct: 374 ELEADWGTISEVAYAEEDAFRRTLSAGTTILDTAVAQARSAGSPIPGASAFSLHDTYGFP 433 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GAT 455 +D+ ++ +G+ +D F +EEQ+ RARA + +G T+ F EK G + Sbjct: 434 IDLTLEMAAEQGVK-VDEDGFRALMEEQKERARADARAKKTGHTDVRVFQEIEKRLGGGS 492 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 +F+GY +G + V A++ G A +G VEVV Sbjct: 493 EFLGY-----------------------TESGCDASVVALLVDGHDAPAAQAGADVEVVL 529 Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+TPFYAE GGQL D G +G +++ DVQ G+FVH V G + Sbjct: 530 DRTPFYAEMGGQLADHGTIRAEGGAVIEVNDVQAPIRGLFVHRGTVVEGAVAVGERAFAQ 589 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R ++ H+ATH+++ L ++G SQ GS +P LRFD HS + ++++ Sbjct: 590 IDTRRRLAIARAHTATHMVYAGLRAVVGQDASQAGSENSPSRLRFDFRHSSALGASQVDD 649 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE VN+ +A++LPV T +M E+A ASGA AL G KY RVRVV++ G LC Sbjct: 650 IEALVNEKLAEDLPVTTEVMGIEEARASGAIALFGEKYGSRVRVVTI----GDGFDKELC 705 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754 GGTHV STG + + ++ E SI +G+RRI+A+ G A + + + LAS Sbjct: 706 GGTHVPSTGHLGRVTVLGEGSIGSGVRRIDALVGDGAYEYQAKEHAIVSRLASL------ 759 Query: 755 NVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV 804 V GR E++ E L +L ++++L+ + D + + A + + I + Sbjct: 760 -VGGRPEDLPERVEALLARLKESEKELEKSRIDQALSQAAGLAARAKTIGRL 810 >gi|225011405|ref|ZP_03701843.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-2A] gi|225003908|gb|EEG41880.1| alanyl-tRNA synthetase [Flavobacteria bacterium MS024-2A] Length = 870 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 315/820 (38%), Positives = 457/820 (55%), Gaps = 70/820 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FL+FF+ H+++PS+ ++ NDPTLMFTN+GM PFK F G P + VT QK Sbjct: 6 VRQQFLDFFESKKHKVVPSAPMVIKNDPTLMFTNAGMNPFKEYFLGNAVPSSKRVTDTQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHTFFEMLGN+SFG YFK+ AI+ AW+LLT+ + +D +LY Sbjct: 66 CLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTEVYKIDPNKLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T++ ++D EAF WK I L ++I+ DNFW M + GPCGPCSEI D Sbjct: 126 VTIFEGAPEEGIEKDNEAFDFWKAI--LPEERILLGNKQDNFWEMGDQGPCGPCSEIHVD 183 Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + E + G+ +++ + IE+WNLVF++F ++ LP+ IDTGMG ER+ Sbjct: 184 IRSEEEKAKVSGAELVNQDHPQVIEVWNLVFIEFNRKANGSLEKLPEKHIDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILP 292 VLQ T+NYD D+F LI+ E +T Y + RVI DH+R+ F IADG LP Sbjct: 244 MVLQNTTSNYDTDVFTPLIREIETLTKSTYGEKQDTDRAIRVIADHIRTVYFAIADGQLP 303 Query: 293 ANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 +N G GYV+RRI+RRA+ Y L EP + L+ L +MG+A+PELI+ + L + Sbjct: 304 SNNGAGYVIRRILRRAIRYGFTFLNQKEPFIHLLVNTLSQQMGTAFPELIREQQLAFNVI 363 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 R E+ F KTLD+GLVLL+ ++++ K + ++G F+LYDT G P D+ I +G + Sbjct: 364 REEENSFLKTLDQGLVLLESLITN-SKSKKIDGSKVFELYDTFGFPFDLTALIAGEKGFS 422 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D F +A+E Q+ R+RA + W L+E +F+GYD L Sbjct: 423 -VDEEGFQKAMEVQKKRSRAAAASKAGD-----WVILQED-NVEEFVGYDHLS------- 468 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 VK + + + A G ++VF+ TPFY E GGQ+GD Sbjct: 469 --------------------VKVKITRYRKMTTAKEGDFYQLVFNLTPFYPEGGGQVGDK 508 Query: 532 G-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL-RTEMSLVLTIDYQNRRQLSINHSA 589 G +G + D KK + VH + I + E + +D + R++ S NH+A Sbjct: 509 GYLEASNGDIFYVLDT-KKENNLIVHQT---KSIPSKLESTFTAVVDPKQRQRSSSNHTA 564 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THL+H AL ++LG+HV Q GS + RFD +H +T+ ELK++E VN I + +P+ Sbjct: 565 THLMHQALRSVLGNHVEQKGSMVHSGMFRFDFSHFAKVTAEELKAVEQFVNARIQEGIPL 624 Query: 650 VT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 R AI GA AL G KY D VR + S LCGGTHV++T I Sbjct: 625 EEGRNTPYNSAIKEGAMALFGEKYGDTVRTIRFG------QSIELCGGTHVANTAVIWHF 678 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I SES++ +GIRRIEAITG A+ + Q L+++ LK +Q + + ++ + E Sbjct: 679 KITSESAVASGIRRIEAITGDAAKKYFEEQTSLLENVNELLKQAQ-DPLKAIQSLQSENT 737 Query: 769 KLQL---IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD 805 L+ + +K K Q+ +DL KI ++ + SEVD Sbjct: 738 ALKKELSVLSKLKTQILKDDL-LQKIKTIDGIQFAASEVD 776 >gi|212550874|ref|YP_002309191.1| alanyl-tRNA synthetase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549112|dbj|BAG83780.1| alanyl-tRNA synthetase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 872 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 329/915 (35%), Positives = 482/915 (52%), Gaps = 100/915 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +F ++F+ H+++ SS +I NDPTLMFTN+GM FK++ G Y + VQK Sbjct: 6 IRQSFKDYFENKNHKIVSSSPMIIKNDPTLMFTNAGMNQFKDVILGNALVKYTRIANVQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI+ AW+ LT+ LD+ RLY Sbjct: 66 CLRVNGKHNDLEEVGHDTYHHTMFEMLGNWSFGDYFKKEAIEYAWEYLTEILKLDKDRLY 125 Query: 127 ITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T++ + D EA W K L II DNFW M GPCGPCSEI D Sbjct: 126 VTIFEGNSSEKLERDNEAANYWGKY--LPKSHIIDGNKKDNFWEMGNMGPCGPCSEIHID 183 Query: 179 -----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 + E + L ++ + IEIWNLVFMQF ++ LP+ IDTGMG ER+ Sbjct: 184 IRSDEEREKV-DSLTLINKNHPQVIEIWNLVFMQFNRKIDGSLENLPQKVIDTGMGFERL 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 V+Q K +NYD D+F+ +IQA +T Y N+ + RV+ DH+R+ +F IADG L Sbjct: 243 CMVVQGKASNYDTDVFQTIIQAISTITKFSYGQNSQRDIAIRVVADHIRTIAFSIADGQL 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N GYV+RRI+RRA+ Y+ L + L+P+L MG YPELI K ++++ Sbjct: 303 PSNTKAGYVIRRILRRAVRYSYTFLEQKRAFIYRLIPSLVDSMGEVYPELIAQKKMMQKV 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++ E+ F +TL+ G LL+ + + +NG F LYDT+G PLD+++ IL + Sbjct: 363 IKEEENSFLQTLEIGTKLLNKKIQEAKTKNKTTINGVDVFILYDTYGFPLDLIKLILHEQ 422 Query: 409 GLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 + +D SF+ + +Q+ RAR A ++ G W L+E G TQF+GYD + Sbjct: 423 NMK-MDKASFDAEMSKQKERARNATTIETGD------WIVLQE--GDTQFVGYDTI---- 469 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 + R + C+K V+Q + + ++V D+TPFYAE GGQ Sbjct: 470 -TTQARILRCRK----------------VKQK-------NTEYYQIVLDKTPFYAEMGGQ 505 Query: 528 LGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 +GD+G I +GI + I D K E V H I+ + + +D + RR N Sbjct: 506 IGDSGQLIDSNGISISIIDT--KCENNLVIH-IINQLPENLYDTFNAEVDARKRRATECN 562 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLLH AL +LG+HV Q GS ++ + LRFD +H K +T E++ +E + I QN Sbjct: 563 HTATHLLHEALRLVLGTHVEQKGSYVSSEVLRFDFSHFKKVTEKEIRQLEKIITKKIRQN 622 Query: 647 LPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + + R + +A GA AL KY + VRV+ S LCGGTH +STG I Sbjct: 623 IALEEKRHIPLVEARRLGAIALFYEKYEENVRVIKFG------SSIELCGGTHTTSTGYI 676 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS-----------LASFLKVSQG 754 I+SE SI AGIRRIEAIT ++ S Q + + + L S K+ Sbjct: 677 GNFRIISEFSISAGIRRIEAITAEKVESFFYAQQDIIHNAKMLLNHTSDLLQSIKKLISE 736 Query: 755 NVV--GRVEEIWEE---YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809 N++ +VE E + K Q+I K++ + + + I ++ S+ Sbjct: 737 NILLKKQVETYNREKTIFIKNQVIKTKKQTPSGINLFILEGFFPASIVKDIAFQIGSEFT 796 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGG 868 + A E K + I+++ DL+ NA + R ++K++ G G Sbjct: 797 EKSYFA------------AATVAEGKPLLTIMISNDLVKNGLNASQIVREASKII-KGNG 843 Query: 869 GGRPHMAQSGGPNGN 883 GG+ H A +GG + N Sbjct: 844 GGQSHFATAGGKDIN 858 >gi|305666370|ref|YP_003862657.1| alanyl-tRNA synthetase [Maribacter sp. HTCC2170] gi|88708362|gb|EAR00599.1| alanyl-tRNA synthetase [Maribacter sp. HTCC2170] Length = 871 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 332/922 (36%), Positives = 502/922 (54%), Gaps = 81/922 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N IR FL+FF+ H+++PS+ ++ +DPTLMFTN+GM FK F G + Sbjct: 2 NSKEIRAQFLDFFETKKHKIVPSAPMVIKDDPTLMFTNAGMNQFKEFFLGNSVAKSPRMA 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+R GKHNDL+ VG+ HHT FEMLGN+SFG YFK+ AI+ AW+LLT + +D+ Sbjct: 62 DTQKCLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKKEAIEWAWELLTDKLQIDK 121 Query: 123 RRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 LY++V+ + D EA++LW I + D+II DNFW M + GPCGPCS Sbjct: 122 DSLYVSVFEGSKDSDNLEMDNEAYELWSGI--VPKDRIIMGNKKDNFWEMGDQGPCGPCS 179 Query: 174 EIFFD----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 EI D + + G +++ +EIWNLVFMQ+ ++ LP+ +DTGMG Sbjct: 180 EIHVDIRPAEEKAETSGAFLVNQDHPLVVEIWNLVFMQYNRKADGALEPLPEKHVDTGMG 239 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIA 287 ER+ VLQ +NYD D+F +I+ E +T Y N ++ RVI DH+R+ +F IA Sbjct: 240 FERLCMVLQGVQSNYDTDVFTPIIREIETITNADYGKNEEIDIAIRVIADHIRAVAFSIA 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG LP+N G GYV+RRI+RRA+ Y L EP M L+ L MG+A+PEL + L Sbjct: 300 DGQLPSNTGAGYVIRRILRRAIRYGFTFLNTKEPFMYRLVNVLTETMGNAFPELKDQRQL 359 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE ++ E+ F TL++GLVLLD ++S K +++ G AF+LYDT+G P+D+ IL Sbjct: 360 IENVVKEEENSFLNTLEQGLVLLDNLVSK-AKGKVVQGRKAFELYDTYGFPIDLTALILE 418 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G +D F++A++EQ+ R+R+ S ++ W L + +F+GYDLL + Sbjct: 419 EKGYT-LDEKGFHEAMKEQKDRSRS-----ASEIAKEDWMVLSDD-SEQEFVGYDLLETN 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + + RKV +K G++ ++VF+ TPFY E GG Sbjct: 472 VKLVKYRKVTSKK---------------------------EGEQYQMVFNLTPFYPEGGG 504 Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR-TEMSLVLTIDYQNRRQLS 584 Q+GD G +G + I D +K+ I VH A + + + T + +D + R++ + Sbjct: 505 QVGDKGYLEAPNGDVVYILDTKKENNEI-VHFA---KNLPKSTSDTFKAVVDKKQRQRTA 560 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH+ATHLLH AL +LG+HV Q GS + LRFD +H +T EL+ +E+ VN I Sbjct: 561 ANHTATHLLHQALREVLGNHVEQKGSAVHSKYLRFDFSHFSKMTVEELREVENFVNARIE 620 Query: 645 QNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 LP+ R + E+A+ GA AL G +Y + VR + S LCGG HV T Sbjct: 621 GQLPLDENRSVPMEEALKGGAMALFGEEYGETVRTIRFG------QSMELCGGAHVKITS 674 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I I SE ++ AGIRRIEAIT + + L + L +Q N V V+ + Sbjct: 675 DIWHFKIKSEGAVAAGIRRIEAITYDAVKDFYFHNNRSLFEIKDLLNNAQ-NPVNAVKAL 733 Query: 764 WEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKELKSVMDAL 816 +E KL QL+ K K N++ ++ +VN + + +V D+ +K + + Sbjct: 734 QDENAKLKKEVEQLLKDKAK---NLKGDLLAELKEVNGIQFLAKKVDLDAAGIKDLSFEM 790 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHM 874 ++ + +L G + KA + ++++L+ NA + R K + GGGGG+P Sbjct: 791 GNN-KNNLFLLFGTEQNGKALLSCYISKELVAEKNLNAGTIVRELGKCI-QGGGGGQPFF 848 Query: 875 AQSGGPNGNKADQAIAGVASFL 896 A +GG N ++A++ +L Sbjct: 849 ATAGGKNPAGIEEALSKAEEYL 870 >gi|224282910|ref|ZP_03646232.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171] gi|313140069|ref|ZP_07802262.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171] gi|313132579|gb|EFR50196.1| alanyl-tRNA synthetase [Bifidobacterium bifidum NCIMB 41171] Length = 892 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 341/920 (37%), Positives = 508/920 (55%), Gaps = 74/920 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P ++ + + Sbjct: 3 TSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT + Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQPEGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T Y +DEEA +WK G + + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWVTTYTDDEEARSIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLE 231 +G E G P + E R+IEIW+LVF +E N + + L + +IDTG GLE Sbjct: 177 RGPEYGKDGGPAADET--RFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 R+A ++Q K N Y+ D +I+A+EQ++G KY + V RV+ DH+RS+ +++DG Sbjct: 235 RLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+N GRGYVLRR++RR + R+LG TEP++ HLLP M ++YPEL + + E Sbjct: 295 VRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVSE 354 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + E++ F +TLD G+ +LD ++ K D +++GD AF L+DT+G P+++ ++ Sbjct: 355 SAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAAD 414 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +G+ +D F + + EQ+SRARA +L K+++ + D Sbjct: 415 QGVK-VDEAKFRELMSEQKSRARADAL--------------KKRHNVDLSVYDDF----- 454 Query: 468 FMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYA 522 +K L Q PID V I+Q+G+ AVS VEV+ D+TPFYA Sbjct: 455 -----KKTLVQ--PIDFLGYTDMSARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYA 507 Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 EAGGQL D G + D G L++ DVQK + + VH + G L + +ID R Sbjct: 508 EAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLAVGTEVSASIDLARRG 567 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ +H+ATH++H AL LG +Q GS P+ LRFD S + + ++E VND Sbjct: 568 AIARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVND 627 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + NL V T M +DAIA GA L G KY D VRVVS+ EDG S LCGGTHV Sbjct: 628 RLRDNLIVTTTEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHVDH 684 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 G+I + I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 685 VGKIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVN 744 Query: 762 ----EIWEEYRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKEL--KSV 812 ++ E R+L ++ + +L +V L + A V + + S + K+V Sbjct: 745 TLLAKLKESDRRLAAMY-EGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTV 803 Query: 813 MDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 MD + + ++ L G+S++ K V + E A DL R ++K+L GGGGG Sbjct: 804 MDVRAQLGEDAPVVVALAGVSEDDKPMVAVATNEAARKNGIKAGDLVRGASKML-GGGGG 862 Query: 870 GRPHMAQSGGPNGNKADQAI 889 G+P AQ GG + ++ D+A+ Sbjct: 863 GKPDFAQGGGSDASRIDEAL 882 >gi|331697330|ref|YP_004333569.1| alanyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190] gi|326952019|gb|AEA25716.1| alanyl-tRNA synthetase [Pseudonocardia dioxanivorans CB1190] Length = 887 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 334/912 (36%), Positives = 495/912 (54%), Gaps = 63/912 (6%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 F + F GH + S+SLI +DPTL+F N+GMV FK F G Y T++QKCVR Sbjct: 10 FTDHFTGTGHTRVASASLI-LDDPTLLFVNAGMVQFKPYFLGDAPAPYPRATSIQKCVRT 68 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRL 125 G D+D VGRT RH+TFF+M GNFSFG YFKE AI+ AW L+T + LD R+ Sbjct: 69 G----DIDEVGRTTRHNTFFQMAGNFSFGDYFKEGAIEHAWRLITSSTSDGGYGLDPDRI 124 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 ++TV+ +D+EA LW++I+G+ A++I R DN+WSM GPCGPCSEI++D+G G Sbjct: 125 WVTVFHDDDEAAGLWQRIAGIPAERIQRRGMADNYWSMGVAGPCGPCSEIYYDRGPQY-G 183 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQ--NKQERFI----LPKMSIDTGMGLERMATVLQE 239 G + +RY+EIWNLVFM+ E+ ++ F LP +IDTG+G+ER+A +LQ Sbjct: 184 REGGPVVDEDRYLEIWNLVFMEKERAAGGTKDDFPIIGELPAKNIDTGLGIERVAYLLQG 243 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGR 297 N Y+ DL + +I +E+++G +Y + + V RVI DH RS +I DG+ P+N+GR Sbjct: 244 VDNVYETDLVRPVITRAEELSGRRYGASHEDDVRFRVIADHARSGVMIIGDGVTPSNDGR 303 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVLRR++RR + +RLLG EP++ + EM +YPEL+ I +R+E+E Sbjct: 304 GYVLRRLLRRIVRSSRLLGVQEPVLGAFAEVVRDEMAPSYPELVTDFERISAVVRAEEEA 363 Query: 358 FGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL G + D ++ + L GD AF+L+DT+G P+D+ ++ GL +D Sbjct: 364 FLQTLTAGSRIFDVAVADTRRAGGTTLAGDQAFQLHDTYGFPIDLTLEMAAEAGLT-VDQ 422 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 F + EQR+RA+A + +G + ++ L + +G T F+GY L Sbjct: 423 DRFAALMTEQRTRAKADAAARKTGHHDGSVYRPLLDAHGTTTFLGYTEL----------- 471 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 V +V G V A GQ+VEVV D+TPFYAEAGGQ D G Sbjct: 472 ------------AAEGTVVGLVVDGAAVPAASEGQQVEVVLDRTPFYAEAGGQQADHGVL 519 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 ++I DVQ G+ VH VE G + + ++V +D R +S H+ATHL+H Sbjct: 520 RTGSAIVRIDDVQSPVAGLRVHRGTVEAGTVAVDDAVVAEVDVARRASISRAHTATHLVH 579 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTH-SKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 + LG+ +Q GS P LRFD T S + +A L IE+ VN + +N V T Sbjct: 580 AGVRGALGTAAAQAGSLNAPGRLRFDFTSPSGAVPAAALAEIEEEVNTKLQENREVETYE 639 Query: 654 MNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 + ++A GA L G KY DRVRVV D G +S LCGGTHV+ TGE+ ++ ++SE Sbjct: 640 TSMDEARRLGAMMLFGEKYGDRVRVV-----DMGDYSRELCGGTHVARTGELGIVKVLSE 694 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 +SI +G+RR+EA+ G A + + L ++ LK + R+ + E R + Sbjct: 695 ASIGSGVRRVEALVGNDALRQVSTEHLLLSQISDQLKARPDELPDRIAALVERLRTAERD 754 Query: 774 HAKRK-----LQLNVEDLSCHKIADVNFMS-HIISEVDSKELKSVMDALQKKI--QSGII 825 K + +A + ++ + V +L+++ ++ ++ + G++ Sbjct: 755 LEKHRADAALGAAGALADGAEDVAGIALVAVAAPAGVSGNDLRALAADVRGRLGDRPGVV 814 Query: 826 MLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 L G + K S ++ T DR A L A + GG GGG+P +AQ GG N Sbjct: 815 ALFGTDGD-KVSFVVATTAAARDRGLAAGKLIPAFAPAV-GGRGGGKPDLAQGGGQNPAG 872 Query: 885 ADQAIAGVASFL 896 AIA + S L Sbjct: 873 VPDAIAALRSAL 884 >gi|168000843|ref|XP_001753125.1| predicted protein [Physcomitrella patens subsp. patens] gi|162695824|gb|EDQ82166.1| predicted protein [Physcomitrella patens subsp. patens] Length = 927 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 342/916 (37%), Positives = 517/916 (56%), Gaps = 73/916 (7%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +IR FLEF+ GH++LPSSSL+P +DPT++ T +GM+ FK IF GQ Y TT Q Sbjct: 38 AIRKRFLEFYAARGHKVLPSSSLVP-DDPTVLLTIAGMLQFKPIFLGQVPRSYPCATTTQ 96 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 K VR ND++NVGRT RHHTFFEMLGNFSFG YFK +AI AW+L T+EF L R+ Sbjct: 97 KVVRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKRQAIAWAWELATQEFKLPLERV 152 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPG 185 +++V+++D+EAF +W+ G+ ++I R+ DNFWS TGPCGPCSE++FD G Sbjct: 153 WVSVFEDDDEAFAIWRDEVGVPVERIKRMGAEDNFWSSGATGPCGPCSEMYFDF-HPERG 211 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 + R+IE +NLVFMQ+ + + + L +IDTG+GLERMA +LQ+ NNY+ Sbjct: 212 TDDADLNDDSRFIEFYNLVFMQYNRTDDGQLEPLKNKNIDTGLGLERMAQILQQVPNNYE 271 Query: 246 IDLFKHLIQASEQVTGMKYEG--NNIVNH-RVIVDHLRSSSFLIADGILPANEGRGYVLR 302 DL +I + + + Y+ + + + +VI DH R+ +LI+DG+ P+N GRGY++R Sbjct: 272 TDLIYPIIARAAALANVDYQSADDRVKTYLKVIGDHTRAVVYLISDGVYPSNIGRGYIVR 331 Query: 303 RIMRRAMCYARLLGY-------TEPLMMHLLPALCTEMGSAY-PELIQAKLLIEETLRSE 354 R++RR + RLLG E + + + M P + Q K+ I L+ E Sbjct: 332 RLIRRVVRMGRLLGIRGDGQGNQEGAFLPTVAEVAVAMSKDVDPNVEQQKIKIYNELKRE 391 Query: 355 DERFGKTLDRGLVLLDGVLSHL----GKD-EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 + RF +TL++G LL+ +L+ G D L+G F+LYDT G P++I +++ RG Sbjct: 392 ELRFVQTLEKGEKLLEELLAEALEKRGTDTPCLSGKDVFRLYDTFGFPVEITEEVASERG 451 Query: 410 LAGIDIISFNQALEEQRSRARAH----SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 + +D+ F +E QR +++A L +G G +++ + E T+F+GYD Sbjct: 452 VT-VDLAGFESEMEIQRKQSQAAHNVIKLAVG-GAAQEMLAQVPE----TEFLGYD---- 501 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 DLT+ SS + AI+ GE + EA G++VE++ D+TPFYAE+G Sbjct: 502 -----------------DLTS--SSSILAILANGEALGEASEGEEVELLLDRTPFYAESG 542 Query: 526 GQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 GQ+GD G GD + K G F H +V+ GI++ + + +D R + Sbjct: 543 GQVGDHGYLRVFGGDSEAVVKVKDVVKEAGRFRHIGVVQDGIVKVGLGVEAEVDPVLRTR 602 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 I+H+ATHLL AL +LGS VSQ GS ++ D LRFD + +T AE+ +E VN+ Sbjct: 603 AQIHHTATHLLQAALKNVLGSDVSQAGSLVSFDRLRFDFNLPRAMTDAEINKVEMLVNEW 662 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I +PV + M A GA A+ G KY ++VRV+SV G+ S LCGGTHV + Sbjct: 663 IGMGVPVTSEEMAIAAAKEKGAIAMFGEKYGEQVRVISVP----GI-SMELCGGTHVRNI 717 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 EI L I+SE I +G+RRIEA+ G ++ +D +K L++ LKV ++ GRV Sbjct: 718 AEIRGLKIMSEQGIASGVRRIEAVAGNAFIEYINARDAVVKQLSASLKVKADDLAGRVVG 777 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIAD--VNFMSHIISEVDSKELKSVMDA 815 + EE R + A +++L V + I D + + ++D++ LK+ + Sbjct: 778 LQEEVRASRNEAAALRVELAVAKAEALLSTATSIGDSSTRVLVASLDKIDAESLKAAAEH 837 Query: 816 LQKKIQSGIIMLVGISK-EKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPH 873 L K+ ++VG S + K S++ + ++ + A AK+ GGGGGGRP+ Sbjct: 838 LLAKLGDPAAVVVGSSPGDGKVSLVATFSPSVVKQGIQAGKFVGTIAKIC-GGGGGGRPN 896 Query: 874 MAQSGGPNGNKADQAI 889 AQ+GG K D+A+ Sbjct: 897 FAQAGGRQPEKLDEAL 912 >gi|33866890|ref|NP_898449.1| alanyl-tRNA synthetase [Synechococcus sp. WH 8102] gi|41018174|sp|Q7U3R9|SYA_SYNPX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|33639491|emb|CAE08875.1| Alanyl-tRNA synthetase [Synechococcus sp. WH 8102] Length = 889 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 304/765 (39%), Positives = 445/765 (58%), Gaps = 42/765 (5%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL F+ + GH+ + S+SLIP DPT++ T +GM+PFK +F GQ++ T+ QK Sbjct: 20 IREAFLNFYAERGHQRMASASLIP-EDPTVLLTIAGMLPFKPVFLGQQQRPAPRATSSQK 78 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFK++AI+ AW+L T+ + +D R L Sbjct: 79 CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKQQAIEWAWELSTQVYGIDPRNLV 134 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++V+ ED+EA ++W+ + G++ +IIR+ DNFW+ TGPCGPCSEI++D + G Sbjct: 135 VSVFREDDEAEQIWRDVVGVNTKRIIRMDEADNFWASGPTGPCGPCSEIYYDFKPEL-GD 193 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 E+ +R+IE +NLVFMQ+ + + L +IDTGMGLERMA +LQ+ NNY+ Sbjct: 194 DGIDLEDDDRFIEFYNLVFMQYNRDAEGNLTPLANRNIDTGMGLERMAQILQKVPNNYET 253 Query: 247 DLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DL LIQA+ + + Y + + +VI DH R+ + LI DG+ +N GRGY+LRR Sbjct: 254 DLIFPLIQAAADLACVDYAQLDDKGKTSLKVIGDHSRAVTQLICDGVTASNLGRGYILRR 313 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 ++RR + + RLLG +P ++ + A + A+P +I+ + +I L+ E+ RF +TL+ Sbjct: 314 LLRRVVRHGRLLGIDKPFLVTMGEAAIDLLKGAHPGVIERQEVILAELQREEARFLETLE 373 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 RG LL VL+ + ++G AF+LYDT+G PL++ Q+I + + +D+ F A+E Sbjct: 374 RGEKLLAEVLAS--RPTQISGAQAFELYDTYGFPLELTQEIAEEQRIT-VDLDGFEVAME 430 Query: 424 EQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPID 483 EQR RA+A ++ + + I + AT F GYD L P Sbjct: 431 EQRQRAKAAAVSIDLTLQDAIE-QVAGDQPATAFKGYDAL--------------DHP--- 472 Query: 484 LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQI 543 S V+A+V G A +G V+VV D TPFY E GGQ+GD G G + + I Sbjct: 473 ------STVQALVVNGAPASTASAGDVVQVVLDSTPFYGEGGGQVGDRGSLSGVDVIVAI 526 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 V + + +FVH +ERG L ++ +D RR+ NH+ATHLL AL ++ Sbjct: 527 DSVSRSRD-VFVHSGRMERGHLAVGDTVNAQVDRSCRRRAQANHTATHLLQAALKQVVDP 585 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 + Q GS + D LRFD +T+ +L IE +N IA+ + + M + A A+G Sbjct: 586 GIGQAGSLVDFDRLRFDFHCPTAVTAEQLAQIETLINGWIAEAHCLEVQEMAIDQAKAAG 645 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A A+ G KY D VRVV V S LCGGTHV++T EI L IV+ES + AGIRRI Sbjct: 646 AVAMFGEKYADVVRVVDVP-----GVSMELCGGTHVANTAEIGLFKIVAESGVAAGIRRI 700 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 EA+ G ++L +D +K L K +V RV + EE + Sbjct: 701 EAVAGPAVLAYLNERDAVVKQLGDRFKAQPAEIVDRVTALQEELK 745 >gi|296126160|ref|YP_003633412.1| alanyl-tRNA synthetase [Brachyspira murdochii DSM 12563] gi|296017976|gb|ADG71213.1| alanyl-tRNA synthetase [Brachyspira murdochii DSM 12563] Length = 857 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 316/896 (35%), Positives = 486/896 (54%), Gaps = 81/896 (9%) Query: 20 HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79 H + SSSLIP +DPTL+FT +GM+ FK + G +K Y V T+QKC R +DL+N Sbjct: 19 HVIEKSSSLIPIDDPTLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRL----SDLEN 74 Query: 80 VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138 +G+T RHHTFFEM GNF F G YFK+ AI+ AW+ T+ L R+Y+++Y++D++AFK Sbjct: 75 IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPIERIYVSIYEKDDDAFK 134 Query: 139 LWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195 +W + G+ +KI+R+ DNFW A ++G CGPCSE++ D GE G P + E Sbjct: 135 IWNEHIGIPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194 Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255 RY+E WNLVF +F Q L + IDTGMGLER+ ++Q +NY D+ K ++ A Sbjct: 195 RYLEFWNLVFNEFFQDTDGNLSPLQNVGIDTGMGLERLCYIMQGVESNYQTDVMKPIVDA 254 Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 + +KYE N +I DHLR+ F++A+G +P+NEGRGYVLRR++RRA+ + L Sbjct: 255 IIKKLNVKYEDKNKTKINLIADHLRALVFVLAEGCVPSNEGRGYVLRRLLRRALKTSSDL 314 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 G+ + L A+ Y L + + I+ L+ E+ +F T+ G+ L V+ Sbjct: 315 GHKGAFLNELTGAVIDVYKDIYDYLPKEEENIKRILKDEENKFLNTISAGMNKLYSVMED 374 Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435 +++ G AF L+DT+GLP DI ++ G +D F +A+EEQ+ R+R Sbjct: 375 NKDSKVIKGSDAFMLFDTYGLPFDITEEEANDHGFT-VDRAGFEEAMEEQKKRSR----- 428 Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495 G+G +K F + T+++G DL +LTNGV + V ++ Sbjct: 429 -GTGEDKKSKFGYVANFD-TKYVGEDLN-------------------NLTNGVKAKVISV 467 Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIF 554 + +V D +PFY E GGQ+GD G D +++TD QKK E Sbjct: 468 YNDNTV-----------IVTDVSPFYGEMGGQVGDNGYIETSDKQTIKVTDTQKK-ENTI 515 Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614 +H + + L ++ R + NH+ATH+L L LG+HV+Q GS + Sbjct: 516 IHILENNNHSFKEGEEITLFVNADRRMAIRKNHTATHILQRVLELTLGNHVNQAGSYVCE 575 Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674 D LRFD TH I+ L +IE+ VN+++ +++P V + M++E+AI+SGA AL G KY D Sbjct: 576 DYLRFDFTHPDSISEETLLNIENKVNEVVFKSMPAVIKYMSKEEAISSGAKALFGEKYPD 635 Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734 VR++ + G S LCGG+H+++T E+ +IVSE S +G+RRIEAITG +A + Sbjct: 636 TVRILDI----GDGFSVELCGGSHLTNTSEVGYFHIVSEGSAASGVRRIEAITGLKAANE 691 Query: 735 LMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRK--------LQLNVED 785 K+K+LA L S+ + R E + E +KLQ + K N ED Sbjct: 692 ATKLFSKVKNLAHILNASKIEEITIRAENLQNEVKKLQKDIKQLKTSGASVTSFMDNYED 751 Query: 786 LSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845 L + ++ F I KE++ D ++++++ I +++ + + S+L+ +T Sbjct: 752 LGGIRFYNLEFNEDI------KEVRLYADTIKERVKDSIAVMISKT-DSSNSILVQLTG- 803 Query: 846 LLDRFNAVDLARLSAKVL-------GGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +AV +LSA + GG GGG+ AQ N +KA + I + S Sbjct: 804 -----SAVKEKKLSANNIIKDIIKTAGGRGGGKDTFAQGSIENIDKAKEEINKLKS 854 >gi|149178839|ref|ZP_01857419.1| alanyl-tRNA synthetase [Planctomyces maris DSM 8797] gi|148842314|gb|EDL56697.1| alanyl-tRNA synthetase [Planctomyces maris DSM 8797] Length = 875 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 323/913 (35%), Positives = 496/913 (54%), Gaps = 70/913 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R ++L FF++ G PS L+P +D T++FT +GM FK+ F G K + + TT Q Sbjct: 6 LRESYLSFFEEKGCVKRPSDVLVPRDDKTVLFTPAGMNQFKDQFLGVGKLEFPSATTCQM 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R G D+ NVG T HHTFFEMLGNFSFG YFK AI AW+ LT K LD Sbjct: 66 CLRTG----DIQNVGVTAYHHTFFEMLGNFSFGDYFKREAIHWAWEYLTDKKYLGLDPSL 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIFFDQ 179 L +TVY ED+EA+ +W L A++I R ++NFW S G CGPCSEIF+ Sbjct: 122 LSVTVYQEDDEAYNIWHDEIKLPANRISRENEHENFWPAGAPSDGPDGVCGPCSEIFYH- 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237 P G G+ +EIWNLVF QF + + LPK +IDTGMGLER A+VL Sbjct: 181 ----PNG-------GKDNVEIWNLVFTQFNRVGNPPDNLKPLPKKNIDTGMGLERTASVL 229 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295 Q +N++ID K L A+ + G Y+ + R I DH+R+ +F I +G+ P + Sbjct: 230 QGVRSNFEIDTLKQLCLAAGDIVGTGYDFDAPSGRPVRRISDHVRAITFSIHEGVNPGRD 289 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 YV+R+++RRA+ LLG EP + L+PA+ M + YP++ + ++ T++ E+ Sbjct: 290 KESYVVRQLLRRALLEGYLLGKHEPFLHRLVPAVVEIMKAPYPDIAKTVENVQSTIKEEE 349 Query: 356 ERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+F +++GL +G L + +++G+ AF L+ T G +++ + L A+ + Sbjct: 350 EQFLGVIEKGLSRFEGFLKSAEQAGSSVISGEDAFDLHQTDGFLIELTE-ALAAKNNMSV 408 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 + FN ++ + + + + L S +E +L + T F GY+ Sbjct: 409 NRTEFNNMMQRHQKDSGSGAF-LDSVMSEGPLTALHKTISETDFKGYE------------ 455 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEVVFDQTPFYAEAGGQLGD 530 T S V I+ + +VE V V VV DQTPFYAEAGGQ+GD Sbjct: 456 -----------TTTTESKVIGIIAEDRLVESMVEKGHAHPVVVVLDQTPFYAEAGGQVGD 504 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG DGI+ ++T+ QK A G+++H + G L +L T+ R + HSAT Sbjct: 505 TGFLEADGIKFEVTNTQKNA-GLYLHIGHLLTGKLEQGQTLTATVTEPRRSGIQRAHSAT 563 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLHHAL T+LG + Q GS + D LRFD +HSK +T E+ IED +N +++ PV Sbjct: 564 HLLHHALHTVLGENAMQRGSKVEEDTLRFDFSHSKAVTPEEISRIEDIINQRVSEGAPVT 623 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T +M + A GA AL G KY D VRVV + G S+ LCGGTH+S+TG++ L I Sbjct: 624 TELMKLQKARELGAMALFGEKYPDYVRVVQM-----GDFSTELCGGTHLSNTGQVGLCKI 678 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG-RVEEIWEEYR- 768 ++E + G+RRI A+TG +A ++ L +A+ +KV + + + R++ + +E R Sbjct: 679 INEELVAKGVRRIYALTGPKALEKTRDTEKLLLEIAAQMKVPRPDDLPVRIQHLQDELRE 738 Query: 769 -KLQLIH-AKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K QL + + L +DL + DV +++ + +L+ + D L+KK + + Sbjct: 739 TKKQLTKFSSKSLAGTADDLLEEAPVVNDVKIVAYHAKDASRDQLRELADHLRKKGKQ-V 797 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 +++G + K +++ V DL+ + +A + GGGGGGRP MA++GG + +K Sbjct: 798 ALILGTVLDGKVALMAAVNSDLVKQGLKAGDCVKAAAKVVGGGGGGRPDMAEAGGKDPDK 857 Query: 885 ADQAIAGVASFLK 897 D+A+ A + + Sbjct: 858 LDEALTTGADYYR 870 >gi|163786078|ref|ZP_02180526.1| alanyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] gi|159877938|gb|EDP71994.1| alanyl-tRNA synthetase [Flavobacteriales bacterium ALC-1] Length = 870 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 335/924 (36%), Positives = 485/924 (52%), Gaps = 93/924 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR+ FL FF+ H ++PS+ ++ +DPTLMF NSGM PFK F G P + QK Sbjct: 6 IRSKFLNFFEGKQHLIVPSAPMVLKDDPTLMFVNSGMAPFKEYFLGNADPKKNRIADSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHT FEMLGN+SFG YFK+ AI AW+LLT+ + +D+ LY Sbjct: 66 CLRVSGKHNDLEEVGYDTYHHTLFEMLGNWSFGDYFKKEAIAWAWELLTEVYGIDKDMLY 125 Query: 127 ITVYD---------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 +TV++ D+EA+ LWK+ + D+I+ DNFW M + GPCGPCSEI Sbjct: 126 VTVFEGSNDADNLKMDQEAYDLWKEF--IPEDRILMGNKKDNFWEMGDQGPCGPCSEIHV 183 Query: 178 D-QGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 D + E + G S + + +EIWNLVFMQ+ ++ + LP IDTGMG ER+ Sbjct: 184 DIRSEEEKSKVDGKSLVNMDHPQVVEIWNLVFMQYNRKANKSLETLPNKHIDTGMGFERL 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGIL 291 VLQ +NYD D+F +I+ E +T Y + V+ RVI DH+R+ +F IADG L Sbjct: 244 CMVLQGVQSNYDTDVFTPIIREIEAITHKDYGKDEKVDVAIRVISDHVRAVAFSIADGQL 303 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RRA+ Y L EP + L+ L +MG A+PEL K LIE Sbjct: 304 PSNNGAGYVIRRILRRAVRYGFTFLDKKEPFIYRLVNILSKKMGKAFPELKAQKQLIENV 363 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ F +TL++GLVLLDG++ EI +G F+L DT+G P D+ IL +G Sbjct: 364 IKEEESSFLRTLEQGLVLLDGIVKTSKTKEI-SGSKVFELKDTYGFPEDLTDLILREKGY 422 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 + F +L+ Q+ R R S W L +FIGYD L + Sbjct: 423 T-YNAEEFKTSLKAQQDRGRE-----ASELKSDDWTILHHD-EVEEFIGYDTLEAHVKIT 475 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 RKV +K G+ ++VF+ TPFY E GGQ+GD Sbjct: 476 RYRKVTSKK---------------------------DGEMYQLVFNITPFYPEGGGQVGD 508 Query: 531 TGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G + G + I D KK + +H + ++ L +D + R + NH+A Sbjct: 509 KGYLEDEHGDVVYILDT-KKENNLIIH--FTKNLPKHSDEVLKAVVDIKQRYRTECNHTA 565 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +LG HV Q GS + LRFD +H +T EL+ +E+ VN I LP+ Sbjct: 566 THLLHQALREVLGDHVEQKGSAVHSKHLRFDFSHFSKLTLEELRDVENFVNSRIEGKLPL 625 Query: 650 -VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 R + +E AIA GA +L G KY D VR + S LCGGTHV++T +I Sbjct: 626 EENRSVPKEQAIADGAMSLFGEKYGDNVRTIRFG------QSIELCGGTHVNNTADIWHF 679 Query: 709 YIVSESSIRAGIRRIEAITGQRARSH--------------LMGQDEKLKSLASFLKVSQG 754 I SES++ +GIRRIEAIT + L E LK+L + L+ Sbjct: 680 KITSESAVASGIRRIEAITNDAVKDFYFENNRVYFEMKDLLNNAKEPLKALQN-LQDENT 738 Query: 755 NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814 ++ ++E + ++ K + I + K +L +I V F++ + ++D+ +K V Sbjct: 739 DLKKQIENLLKD--KAKNIKGELKNELT-------EINGVQFLAKKL-DLDAGGIKDVSF 788 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRP 872 L + ++ + +L G KA + ++++L+ NA + R K + GGGGG+P Sbjct: 789 ELGSQFKN-LFLLFGSENNGKAILSCYISKELVASKDLNAGTIVRELGKHI-QGGGGGQP 846 Query: 873 HMAQSGGPNGNKADQAIAGVASFL 896 A +GG N D A+ ++L Sbjct: 847 FFATAGGKNPAGIDAALKAAKNYL 870 >gi|310287353|ref|YP_003938611.1| Alanyl-tRNA synthetase [Bifidobacterium bifidum S17] gi|309251289|gb|ADO53037.1| Alanyl-tRNA synthetase [Bifidobacterium bifidum S17] Length = 892 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 342/920 (37%), Positives = 508/920 (55%), Gaps = 74/920 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P ++ + + Sbjct: 3 TSEIAKRYLDYFSKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPHKRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT + Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTPQSEGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T Y +DEEA +WK G + + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWVTTYTDDEEARSIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLE 231 +G E G P + E R+IEIW+LVF +E N + + L + +IDTG GLE Sbjct: 177 RGPEYGKDGGPAADET--RFIEIWDLVFENYEVDNVKSKTDLHIVGELNQKNIDTGAGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 R+A ++Q K N Y+ D +I+A+EQ++G KY + V RV+ DH+RS+ +++DG Sbjct: 235 RLAYLMQGKQNIYETDEVYPVIEAAEQLSGRKYGEDAAADVKFRVVADHVRSALMIMSDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+N GRGYVLRR++RR + R+LG TEP++ HLLP M ++YPEL + + E Sbjct: 295 VRPSNVGRGYVLRRLLRRTIQAMRVLGVTEPVIPHLLPVSKDAMVASYPELEKTFHDVSE 354 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + E++ F +TLD G+ +LD ++ K D +++GD AF L+DT+G P+++ ++ Sbjct: 355 SAYGEEDAFRRTLDNGIEILDVAVNKAKKTSDPVVSGDDAFTLHDTYGFPIELTLEMAAD 414 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +G+ +D F + + EQ+SRARA +L K+++ + D Sbjct: 415 QGVK-VDEAKFRELMSEQKSRARADAL--------------KKRHNVDLSVYDDF----- 454 Query: 468 FMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYA 522 +K L Q PID V I+Q+G+ AVS VEV+ D+TPFYA Sbjct: 455 -----KKTLVQ--PIDFLGYTDMSARGRVLGIMQEGKGSVPAVSAPANVEVILDRTPFYA 507 Query: 523 EAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 EAGGQL D G + D G L++ DVQK + + VH + G L + +ID R Sbjct: 508 EAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGTEVSASIDLARRG 567 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ +H+ATH++H AL LG +Q GS P+ LRFD S + + ++E VND Sbjct: 568 AIARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVND 627 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + NL V T M +DAIA GA L G KY D VRVVS+ EDG S LCGGTHV Sbjct: 628 RLRDNLIVTTTEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDH 684 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 G+I + I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 685 VGKIGSINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDKLNARPDELAERVN 744 Query: 762 ----EIWEEYRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKEL--KSV 812 ++ E R+L ++ + +L +V L + A V + + S + K+V Sbjct: 745 TLLAKLKESDRRLAAMY-EGQLAASVPQLVAAAKTSAARVKVAAKNVGHFGSFDALRKTV 803 Query: 813 MDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 MD + + S ++ L G+S++ K V + E A DL R ++K+L GGGGG Sbjct: 804 MDVRAQLGEDASVVVALAGVSEDDKPMVAVATNEAARKNGIKAGDLVRGASKML-GGGGG 862 Query: 870 GRPHMAQSGGPNGNKADQAI 889 G+P AQ GG + + D+A+ Sbjct: 863 GKPDFAQGGGSDASCIDEAL 882 >gi|227432461|ref|ZP_03914448.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351782|gb|EEJ42021.1| alanyl-tRNA synthetase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 893 Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust. Identities = 347/930 (37%), Positives = 510/930 (54%), Gaps = 74/930 (7%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M ++SS IR FL+FF GHE +PS +LIP +DPTL++ NSG+ K F G P Sbjct: 1 MKDLSSAEIRQMFLDFFASKGHEAVPSKNLIPQDDPTLLWINSGVATLKKYFDGTVVPNN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 +T QK +R ND++NVG+T RHHT FEM+GNFS G YFKE+AI AW+LLT Sbjct: 61 PRITNSQKAIRT----NDIENVGKTARHHTLFEMMGNFSIGDYFKEQAIPWAWELLTSPE 116 Query: 118 -FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 + LD +LY+TVY +D+EA K+W++ + L I + DNFW + E GP GP SEIF Sbjct: 117 WYGLDAEKLYVTVYPKDQEARKIWEEKTSLPDGHIYEV--EDNFWDIGE-GPSGPDSEIF 173 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSID 225 FD+G P PG E ERY+EIWNLVF QF + + LP +ID Sbjct: 174 FDRGSSFQDLPDDDPEMYPGG--ENERYLEIWNLVFSQFNHLPGLTDNSQYPELPHKNID 231 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEG--NNIVN--HRVIVDHLR 280 TGMGLER+ +V Q N+D DLF +IQ +E+++ Y+ ++ VN +VI DH+R Sbjct: 232 TGMGLERVVSVFQNGRTNFDTDLFLPIIQDTERLSNQFTYDDSQDSEVNTSFKVIADHIR 291 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +F I DG LP+NEGRGYV+RR++RRA+ + + LG + +L+P + M S YPE+ Sbjct: 292 AITFAIGDGALPSNEGRGYVIRRLLRRAVLHGQKLGIKGQFLTNLVPIVGDIMESYYPEV 351 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLP 397 I++T+ +E++RF TL GL LL+ V+ G+ +I D AFKL DT+G P Sbjct: 352 KANTAKIQKTVAAEEKRFNATLTGGLSLLNDVIKEAKKTGQTQISGAD-AFKLSDTYGFP 410 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 L++ Q+ GL +D+ +N L+ QR RARA S + G Sbjct: 411 LELTQEQAEDAGLI-VDVDGYNDELQAQRVRARAAR-------------SNTKSMGVQNA 456 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 + DL SK++ + + + + V A++ ++ V+V FD Sbjct: 457 VLTDLRVDSKYVGWSQTEVNHAEIVAIIGEDEQGVDALLDNADV------DATVQVAFDV 510 Query: 518 TPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 TPFY+E GGQ+ D G + GD I +TDVQ G +H V + + L Sbjct: 511 TPFYSEMGGQVPDFGDVLNTNGDVIA-HVTDVQTAPNGQHIHTVDVISSFTLGD-KVDLK 568 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D +S NH+ATH+L +L +LG V Q GS + P+ LRFD + P++S +L Sbjct: 569 VDMVRHIAVSKNHTATHMLDQSLRNVLGGDVHQAGSLVEPEYLRFDFNNEGPVSSEDLDK 628 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE +N IA+NL V + E A GA A+ G KY D+VRVVS+ G + Sbjct: 629 IESMMNQEIAKNLSVTWLETDIESAKKLGAVAVFGEKYGDQVRVVSI-----GDFNKEFD 683 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ- 753 GGTH +ST E+ L IVSES I AG+RRIEA+TG +A S Q++ LK +A+ LK + Sbjct: 684 GGTHANSTAELGLFKIVSESGIGAGVRRIEAVTGLQALSQYKAQEKALKEIATALKAQKL 743 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----VNFMSHIISEVDSK-- 807 + +V ++ + R +Q HA+ L+ + + + +I + VN ++I +++ Sbjct: 744 TDAPEKVYDLQADLRTVQR-HAE-SLEAKLANATAGEIFNDVKTVNGHTYITAQLQVSGM 801 Query: 808 -ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866 L+ V D ++ S +++L ++ EK + ++ + A +L + A + GG Sbjct: 802 DGLRQVADNWKENYPSDVLVLATVADEKVSLIVAAAPDANQSGIKAGELIKSIAPHI-GG 860 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGGGRP MAQ+GG A A V++FL Sbjct: 861 GGGGRPDMAQAGGKKPAGIPDAFAAVSAFL 890 >gi|315655398|ref|ZP_07908298.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 51333] gi|315490338|gb|EFU79963.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 51333] Length = 895 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 302/866 (34%), Positives = 460/866 (53%), Gaps = 61/866 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L+FF KNGHE+ PS LI DP+++FT +GMVPF G E + T+ Sbjct: 3 TAEVRQRWLDFFAKNGHEVRPSVPLI-SPDPSILFTIAGMVPFIPYIVGTEPAPWPRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT + Sbjct: 62 VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD +L++T++++DE A+ +W + GL + ++ + FW + GP GPC+EI D Sbjct: 118 GLDGDKLWVTIWEQDEAAWDIWTRQIGLDPAHVQKLPREEIFWDTGQPGPAGPCAEIHLD 177 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232 +G E P G P +G+RY+E+WNLVF +F E K + L + +IDTG+GLER Sbjct: 178 RGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADG 289 +A VLQ K N Y+ID +I A++ ++G +Y + V+ R++ DH+RSS LI DG Sbjct: 238 LAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIGDG 297 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+NEGRGYVLRR+MRRA+ RLLG +E +M LLPA M ++YPEL + I E Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTISE 357 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E++ F +TLD G V+LD ++ + L+GD AF+L+DT+G PL + +I Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAAEA 417 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYG---ATQFIGYDLLR 464 G+ +D F + + EQ+ RARA ++ +G + ++ L K G +F+GY Sbjct: 418 GVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY---- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q G+ V A + +EV+ D+TPFYAEA Sbjct: 473 -------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYAEA 513 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G G L + DVQ +G+ +H + G + TID + R + Sbjct: 514 GGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRGAI 573 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H++TH++H L LG +Q GS P +RFD ++K + + + IE N+ + Sbjct: 574 ARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANERV 633 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N+ V M E+A +GA A+ G KY VR+V + G S CGGTHV TG Sbjct: 634 QTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPLTG 689 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I + ++ ESSI +G+RRIEA+ G A + + + + +V R+ + Sbjct: 690 HIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERITSL 749 Query: 764 WEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + + + K +L N++D S + V + + +L+ L+ Sbjct: 750 MDRLKVAEKELEKTRLAALLSNLDDYAKSAETLCGVQIIHQVAPAGSVDDLRQAATTLRA 809 Query: 819 KIQS---GIIMLVGISKEKKASVLIV 841 + + ++ L + EK V+ V Sbjct: 810 RFSNANPAVVALAAVIGEKPMLVVAV 835 >gi|298346853|ref|YP_003719540.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 43063] gi|298236914|gb|ADI68046.1| alanine--tRNA ligase [Mobiluncus curtisii ATCC 43063] Length = 895 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/864 (34%), Positives = 459/864 (53%), Gaps = 58/864 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L+FF KNGHE+ PS LI DP+++FT +GMVPF G E + T+ Sbjct: 3 TAEVRQRWLDFFAKNGHEVRPSVPLI-SPDPSILFTIAGMVPFIPYIVGTEPAPWPRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT + Sbjct: 62 VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD +L++T++++DE A+ +W + GL + ++ + FW + GP GPC+EI D Sbjct: 118 GLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIHLD 177 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232 +G E P G P +G+RY+E+WNLVF +F E K + L + +IDTG+GLER Sbjct: 178 RGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADG 289 +A VLQ K N Y+ID +I A++ ++G +Y + V+ R++ DH+RSS LI DG Sbjct: 238 LAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIGDG 297 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+NEGRGYVLRR+MRRA+ RLLG +E +M LLPA M ++YPEL + I E Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTISE 357 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E++ F +TLD G V+LD ++ + L+GD AF+L+DT+G PL + +I Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAAEA 417 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYG---ATQFIGYDLLR 464 G+ +D F + + EQ+ RARA ++ +G + ++ L K G +F+GY Sbjct: 418 GVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY---- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q G+ V A + +EV+ D+TPFYAEA Sbjct: 473 -------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYAEA 513 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G G L + DVQ +G+ +H + G + TID + R + Sbjct: 514 GGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRGAI 573 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H++TH++H L LG +Q GS P +RFD ++K + + + IE N+ + Sbjct: 574 ARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANERV 633 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N+ V M E+A +GA A+ G KY VR+V + G S CGGTHV TG Sbjct: 634 QTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPLTG 689 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I + ++ ESSI +G+RRIEA+ G A + + + + +V R+ + Sbjct: 690 HIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERITSL 749 Query: 764 WEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + + + K +L N++D S + V + + +L+ L+ Sbjct: 750 MDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQVAPAGSVDDLRQAATTLRA 809 Query: 819 KIQSGIIMLVGISKEKKASVLIVV 842 + + +V ++ ++VV Sbjct: 810 RFSNANPAVVALAAVIGGKPMLVV 833 >gi|315656689|ref|ZP_07909576.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492644|gb|EFU82248.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 895 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 300/864 (34%), Positives = 459/864 (53%), Gaps = 58/864 (6%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L+FF KNGHE+ PS LI DP+++FT +GMVPF G E + T+ Sbjct: 3 TAEVRQRWLDFFAKNGHEVRPSVPLI-SPDPSILFTIAGMVPFIPYIVGTEPAPWPRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT + Sbjct: 62 VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD +L++T++++DE A+ +W + GL + ++ + FW + GP GPC+EI D Sbjct: 118 GLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIHLD 177 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232 +G E P G P +G+RY+E+WNLVF +F E K + L + +IDTG+GLER Sbjct: 178 RGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADG 289 +A VLQ K N Y+ID +I A++ ++G +Y + V+ R++ DH+RSS LI DG Sbjct: 238 LAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIGDG 297 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+NEGRGYVLRR+MRRA+ RLLG +E +M LLPA M ++YPEL + I E Sbjct: 298 VRPSNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTISE 357 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E++ F +TLD G V+LD ++ + L+GD AF+L+DT+G PL + +I Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAAEA 417 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYG---ATQFIGYDLLR 464 G+ +D F + + EQ+ RARA ++ +G + ++ L K G +F+GY Sbjct: 418 GVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY---- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q G+ V A + +EV+ D+TPFYAEA Sbjct: 473 -------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYAEA 513 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G G L + DVQ +G+ +H + G + TID + R + Sbjct: 514 GGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRGAI 573 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H++TH++H L LG +Q GS P +RFD ++K + + + IE N+ + Sbjct: 574 ARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANERV 633 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N+ V M E+A +GA A+ G KY VR+V + G S CGGTHV TG Sbjct: 634 QTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPLTG 689 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 I + ++ ESSI +G+RRIEA+ G A + + + + +V R+ + Sbjct: 690 HIGSIALLGESSIGSGVRRIEALVGNGASGFQAKEHALVSQVTQLVGAKPETLVERITSL 749 Query: 764 WEEYRKLQLIHAKRKLQL---NVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 + + + K +L N++D S + V + + +L+ L+ Sbjct: 750 MDRLKTAEKELEKTRLAALLSNLDDYAKSAETLCGVQVIHQVAPAGSVDDLRQAATTLRA 809 Query: 819 KIQSGIIMLVGISKEKKASVLIVV 842 + + +V ++ ++VV Sbjct: 810 RFSNANPAVVALAAVIGGKPMLVV 833 >gi|308276522|gb|ADO26421.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis I19] Length = 905 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 329/918 (35%), Positives = 494/918 (53%), Gaps = 71/918 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F F K GH+ +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 21 IRERFTNHFVKAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNGTATSI 79 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT F Sbjct: 80 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWALLTDSVAEGGFG 135 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA +W K G+ ++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 136 LDPERLWVTVYLDDDEAADIWNKKIGIPTERIQRLGMADNYWSMGIPGPCGPCSEIYYDR 195 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233 G G G + RY+EIWNLVFMQ E + N + LPK +IDTG+G+ER+ Sbjct: 196 GAAY-GKEGGPIADDNRYMEIWNLVFMQNERGEGIGKDNFEILGPLPKKNIDTGLGVERV 254 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EG---NNIVNHRVIVDHLRSSSFLIADG 289 A +LQ N Y+ DL + +I +E++TG Y EG +++ RVI DH R+ LI DG Sbjct: 255 ACILQGVDNVYETDLLRPVIDVAEKLTGASYGEGAPHQDLIRFRVIADHSRTGMMLILDG 314 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P NEGRGY+LRR++RR + A LLG + + + M +YPE+ + + I + Sbjct: 315 VTPGNEGRGYILRRLLRRIIRSAHLLGAKGNTLEQFMNTIMDTMTPSYPEIAENRERILK 374 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407 +E++ F KTL G L + + + ++L+G AFKL+DT+G P+D+ ++ Sbjct: 375 VALTEEKAFLKTLASGTQLFEEKADEVKTEGKKLLDGASAFKLHDTYGFPIDLTLEMAAE 434 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ + EQR+RA+A + G + + T+F GY L Sbjct: 435 AGLE-VDTAGFDSLMAEQRARAKADNRAKKHGHVDLSIYREWVDEHPTEFTGYSELS--- 490 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S V ++ G V E +G +VE++ + +P YAEAGGQ Sbjct: 491 --------------------TESKVLGMIAGGAKVNEVTAGDEVEIILEASPLYAEAGGQ 530 Query: 528 LGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 GD G I GD I + + DVQK + ++VH A V +G L ++ +D Q R Sbjct: 531 TGDRGTIIMGDTI-VNVNDVQKIGKKLWVHKATVTQGGLSIGDTVSANVDKQWRHSARQA 589 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LG Q GS P LRFD +++ +T+ +L I+ N + + Sbjct: 590 HSATHLIHAALRDVLGPTAVQAGSLNRPGYLRFDFNYTEALTADQLAQIQLITNQAVDVD 649 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + ++A A GA AL G Y VRVV + GG S LCGGTHV + +I Sbjct: 650 WTVNTIETSLDEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVEHSSQIG 705 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + I+ ESS+ +G+RRIEA +G + +L + ++ +A+ +K ++ R+ + ++ Sbjct: 706 PVSILGESSVGSGVRRIEAYSGLDSFQYLAKEKALVEGIAASMKSKTDDIPERIASLTQK 765 Query: 767 YRKLQLIHAK-RKLQLNVEDLSCHKIAD----VNFMSHIISE-VDSKELKSVMDALQKKI 820 ++ + A R QL + AD V+ ++H ++E V S +++++ L+ ++ Sbjct: 766 LKEAEKAVADLRAAQLRNQAAKLLTDADEVNGVSVVAHRLTENVSSNDVRALALDLKSRL 825 Query: 821 --QSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGG---GGGGGRPHM 874 + +I L+ K ++ T+ + A DL AKVLG G GGG+P M Sbjct: 826 GDKPAVIALIAEDGTGKTPFVVAATKAGVAQGVKANDL----AKVLGSYIQGNGGGKPDM 881 Query: 875 AQSGGPNGNKADQAIAGV 892 AQ + D +A + Sbjct: 882 AQGSARDIAGFDSGVAAI 899 >gi|304389442|ref|ZP_07371405.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327252|gb|EFL94487.1| alanine--tRNA ligase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 895 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 287/748 (38%), Positives = 419/748 (56%), Gaps = 53/748 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R +L+FF KNGHE+ PS LI DP+++FT +GMVPF G E + T+ Sbjct: 3 TAEVRQRWLDFFAKNGHEVRPSVPLI-SPDPSILFTIAGMVPFIPYIVGTEPAPWPRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKC+R ND+D VG+T RH TFF+M GNFSFG YFKE A + AWDLLT + Sbjct: 62 VQKCIRT----NDIDEVGKTTRHGTFFQMCGNFSFGDYFKEGASKFAWDLLTGSQKDGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD +L++T++++DE A+ +W + GL + ++ + FW + GP GPC+EI D Sbjct: 118 GLDGDKLWVTIWEQDEAAWDIWTRQIGLDPTHVQKLPREEIFWDTGQPGPAGPCAEIHLD 177 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232 +G E P G P +G+RY+E+WNLVF +F E K + L + +IDTG+GLER Sbjct: 178 RGPEYGPEGGPEVDTQGDRYLELWNLVFDEFLRGEGTGKDYPLLGKLDQTAIDTGLGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADG 289 +A VLQ K N Y+ID +I A++ ++G +Y + V+ R++ DH+RSS LI DG Sbjct: 238 LAFVLQGKDNMYEIDEVFPVIAAAQDMSGRRYTSSTDQMDVHFRIVADHVRSSLMLIGDG 297 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P NEGRGYVLRR+MRRA+ RLLG +E +M LLPA M ++YPEL + I E Sbjct: 298 VRPGNEGRGYVLRRLMRRAVRSMRLLGVSEAVMPQLLPASMNVMKASYPELEKDWDTISE 357 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E++ F +TLD G V+LD ++ + L+GD AF+L+DT+G PL + +I Sbjct: 358 VAYAEEDAFRRTLDAGTVILDTAVAKAKQSGAALSGDDAFQLHDTYGFPLSLTLEIAAEA 417 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK-IWFSLKEKYG---ATQFIGYDLLR 464 G+ +D F + + EQ+ RARA ++ +G + ++ L K G +F+GY Sbjct: 418 GVK-VDEKRFTELMNEQKQRARADAVAKKTGHVDTHVYHELAAKLGENNTVEFLGY---- 472 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V I+Q G+ V A + +EV+ D+TPFYAEA Sbjct: 473 -------------------TETSAPARVVGILQDGKPVPVATAPATIEVLLDRTPFYAEA 513 Query: 525 GGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQL D G G L + DVQ +G+ +H + G + TID + R + Sbjct: 514 GGQLADQGQITFAGGGVLDVADVQAPVKGLPMHRGTLTEGQVTLGEDAQATIDVERRGAI 573 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + H++TH++H L LG +Q GS P +RFD ++K + + + IE N+ + Sbjct: 574 ARAHTSTHVIHQILLDSLGQGATQAGSENAPWHVRFDFRNAKALPDSLMADIEAEANERV 633 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 N+ V M E+A +GA A+ G KY VR+V + G S CGGTHV TG Sbjct: 634 QTNMTVTDYQMPIEEARKTGAQAIFGEKYGKIVRIVDI----GDGWSREFCGGTHVPLTG 689 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRA 731 I + ++ ESSI +G+RRIEA+ G A Sbjct: 690 HIGSIALLGESSIGSGVRRIEALVGNGA 717 >gi|300858567|ref|YP_003783550.1| alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41] gi|300686021|gb|ADK28943.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis FRC41] gi|302206280|gb|ADL10622.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis C231] gi|302330837|gb|ADL21031.1| Alanyl-tRNA synthetase [Corynebacterium pseudotuberculosis 1002] Length = 890 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 329/918 (35%), Positives = 494/918 (53%), Gaps = 71/918 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F F K GH+ +PS+SLI +DP L+F N+GMVPFK F GQ+ P + T++ Sbjct: 6 IRERFTNHFVKAGHQAVPSASLI-LDDPNLLFVNAGMVPFKPYFLGQQNPPFPNGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT F Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAITHAWALLTDSVAEGGFG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY +D+EA +W K G+ ++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDPERLWVTVYLDDDEAADIWNKKIGIPTERIQRLGMADNYWSMGIPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERM 233 G G G + RY+EIWNLVFMQ E + N + LPK +IDTG+G+ER+ Sbjct: 181 GAAY-GKEGGPIADDNRYMEIWNLVFMQNERGEGIGKDNFEILGPLPKKNIDTGLGVERV 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EG---NNIVNHRVIVDHLRSSSFLIADG 289 A +LQ N Y+ DL + +I +E++TG Y EG +++ RVI DH R+ LI DG Sbjct: 240 ACILQGVDNVYETDLLRPVIDVAEKLTGASYGEGAPHQDLIRFRVIADHSRTGMMLILDG 299 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P NEGRGY+LRR++RR + A LLG + + + M +YPE+ + + I + Sbjct: 300 VTPGNEGRGYILRRLLRRIIRSAHLLGAKGNTLEQFMNTIMDTMTPSYPEIAENRERILK 359 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407 +E++ F KTL G L + + + ++L+G AFKL+DT+G P+D+ ++ Sbjct: 360 VALTEEKAFLKTLASGTQLFEEKADEVKTEGKKLLDGASAFKLHDTYGFPIDLTLEMAAE 419 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F+ + EQR+RA+A + G + + T+F GY L Sbjct: 420 AGLE-VDTAGFDSLMAEQRARAKADNRAKKHGHVDLSIYREWVDEHPTEFTGYSELS--- 475 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S V ++ G V E +G +VE++ + +P YAEAGGQ Sbjct: 476 --------------------TESKVLGMIAGGAKVNEVTAGDEVEIILEASPLYAEAGGQ 515 Query: 528 LGDTGCAI-GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 GD G I GD I + + DVQK + ++VH A V +G L ++ +D Q R Sbjct: 516 TGDRGTIIMGDTI-VNVNDVQKIGKKLWVHKATVTQGGLSIGDTVSANVDKQWRHSARQA 574 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 HSATHL+H AL +LG Q GS P LRFD +++ +T+ +L I+ N + + Sbjct: 575 HSATHLIHAALRDVLGPTAVQAGSLNRPGYLRFDFNYTEALTADQLAQIQLITNQAVDVD 634 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 V T + ++A A GA AL G Y VRVV + GG S LCGGTHV + +I Sbjct: 635 WTVNTIETSLDEAKAMGAMALFGENYGSTVRVVEI----GGPFSMELCGGTHVEHSSQIG 690 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 + I+ ESS+ +G+RRIEA +G + +L + ++ +A+ +K ++ R+ + ++ Sbjct: 691 PVSILGESSVGSGVRRIEAYSGLDSFQYLAKEKALVEGIAASMKSKTDDIPERIASLTQK 750 Query: 767 YRKLQLIHAK-RKLQLNVEDLSCHKIAD----VNFMSHIISE-VDSKELKSVMDALQKKI 820 ++ + A R QL + AD V+ ++H ++E V S +++++ L+ ++ Sbjct: 751 LKEAEKAVADLRAAQLRNQAAKLLTDADEVNGVSVVAHRLTENVSSNDVRALALDLKSRL 810 Query: 821 --QSGIIMLVGISKEKKASVLIVVTE-DLLDRFNAVDLARLSAKVLGG---GGGGGRPHM 874 + +I L+ K ++ T+ + A DL AKVLG G GGG+P M Sbjct: 811 GDKPAVIALIAEDGTGKTPFVVAATKAGVAQGVKANDL----AKVLGSYIQGNGGGKPDM 866 Query: 875 AQSGGPNGNKADQAIAGV 892 AQ + D +A + Sbjct: 867 AQGSARDIAGFDSGVAAI 884 >gi|217967411|ref|YP_002352917.1| alanyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724] gi|217336510|gb|ACK42303.1| alanyl-tRNA synthetase [Dictyoglomus turgidum DSM 6724] Length = 865 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 318/912 (34%), Positives = 494/912 (54%), Gaps = 69/912 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR F+++F H LPS+SL+P +DPTL+FT +GMVPFK F GQ P + +TTV Sbjct: 4 SDIRKKFIDYFVSKDHLHLPSASLVPSDDPTLLFTTAGMVPFKPYFLGQGIPPKRRITTV 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC R D++ VG T RH TF EMLGNFSFG YFK AI A++ LTKE + + Sbjct: 64 QKCFRT----TDIERVGITPRHLTFLEMLGNFSFGDYFKREAIGFAYEFLTKELGIPISK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC-SEIFFDQG--- 180 L+I+VY+ED+EA+ +W K G+ ++I+R+ DNFW SEI++D G Sbjct: 120 LWISVYEEDDEAYDIWNKEIGIPKERIVRLGKEDNFWGPPGPTGPCGPCSEIYYDFGPKS 179 Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 +C PG + +R++EIWNLVFM + + + LP+ +IDTGMGLER+ TV Sbjct: 180 KDEEDCKPG------DPCDRFMEIWNLVFMAYYMDEEGKLSPLPQKNIDTGMGLERITTV 233 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEG 296 ++ +N ++ DLF +I+ ++ + ++ V R+I DH+R +FL+ DG++P NEG Sbjct: 234 VEGVSNVFETDLFVPIIEEIRKIV----KDSDSVTERLISDHIRGITFLMGDGVVPTNEG 289 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYVLRR++RR++ A G +P + L+P + M AYP+LI+ K I++ L E++ Sbjct: 290 RGYVLRRLIRRSLRRAYKHGIVKPFLYKLVPIVVDIMKDAYPDLIEKKDYIQKVLIKEED 349 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +F +TL++GL LL+ + + G+ AFKLYDT+G P+++ ++I G +D+ Sbjct: 350 QFLRTLEQGLSLLEDYFRK-APSKTVGGEFAFKLYDTYGFPIELTKEIAEEEGFV-VDVD 407 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-------KYGATQFIGYDLLRGSKFM 469 FN+ +EEQR +ARA E+ + SL + ++F+GY++L Sbjct: 408 GFNKYMEEQREKARASM----EAKLEESFISLSDDEVYLMKSLPKSEFVGYEVLES---- 459 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + KVL G+ ++ +G++V + D+TPFY E GGQ+ Sbjct: 460 --ESKVL------------------FFIGGKHGKKISNGEEVYFLMDKTPFYPEGGGQVS 499 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 DTG + + + +V++ E +H V +G + +D + R +H+A Sbjct: 500 DTGKVYNSEVEVMVLEVKRLGEDFIIHRGKVLKGEFEEGQIVRAEVDKEKRYHTMRHHTA 559 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL LG+HV Q+GS ++P+ LRFD TH P+T +LK IE VN+ I N V Sbjct: 560 THLLHAALREYLGTHVMQSGSLVSPEFLRFDFTHHSPLTYEDLKIIERKVNENILANHKV 619 Query: 650 VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLY 709 N E+A GA AL KY VR++ + S LCGGTHV TGEI Y Sbjct: 620 EKFWTNLEEAKRMGAIALFTEKYQKNVRIIKI-----NNVSMELCGGTHVDCTGEIGSFY 674 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRK 769 IV E I +GIRRI A+ G +A ++E L ++ LK S + ++E++ +E ++ Sbjct: 675 IVKEEGIGSGIRRIFAVCGLKAWEFQKRREEILNKISFVLKSSPDEIYVKLEKLIDEMKE 734 Query: 770 LQLIHAKRKLQLNVEDLS--CHKIADVNFMSHIISEVD--SKELKSVMDALQKKIQSGII 825 + + ++ ++L +KI + S I + VD ++ +K + D L+ K + I+ Sbjct: 735 KEKKIKDLEERIIEKELEVLANKIENWGEFSFICTYVDMENEAIKKLGDHLKSKNDNLIM 794 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + S K ++V + L A + + + G GGG+ +AQ P + Sbjct: 795 VFFKPSDNKLLGTIMVSKKVNLKGITAKKIVEIIGERF-NGKGGGKDTLAQISLPKTDIE 853 Query: 886 DQAIAGVASFLK 897 D A + LK Sbjct: 854 DIKRALKETLLK 865 >gi|148272984|ref|YP_001222545.1| alanyl-tRNA synthetase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|205830025|sp|A5CRZ5|SYA_CLAM3 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|147830914|emb|CAN01858.1| alaS [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 885 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 292/786 (37%), Positives = 431/786 (54%), Gaps = 53/786 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR +L +F GH ++PS+SL+ +DPTL+FT +GMVPF TG + T Sbjct: 2 QTADIRNAWLTYFGDRGHTVVPSASLV-SDDPTLLFTVAGMVPFVPYLTGVVPAPFPRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKC+R D++ VGRT RH TFF+M GNFSFG YFKE+AI AW+LLT Sbjct: 61 SVQKCIRT----LDIEEVGRTPRHGTFFQMNGNFSFGDYFKEQAIAYAWELLTTSEADGG 116 Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 F D L++TVY ED+EA + WK+I+GL ++I + + N+W + GP GPCSEI Sbjct: 117 LGFSPDD--LWVTVYHEDDEARQAWKRIAGLPDERIQGLGRDTNYWHTGQPGPAGPCSEI 174 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMG 229 FFD+G G G + + +RY+EIWNLVFMQ+ + K + IL PK +IDTGMG Sbjct: 175 FFDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGAGTGKSDFEILGDLPKKNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIA 287 LER+A + Q N Y+ID + ++ + +++G +Y + + V R++ DH+RSS L++ Sbjct: 234 LERVAFLKQGVENMYEIDQVRPVLDRAAELSGRRYGADHEDDVRMRIVADHVRSSLMLMS 293 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P+NEGRGY+LRR+MRR + RL+G L PA M +AYPE+ I Sbjct: 294 DGVRPSNEGRGYILRRLMRRTVRAMRLMGVDAATFGELFPASRDAMKAAYPEVSDDFDRI 353 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+E F +TL G +LD + E + GD AF L+DT G P+D+ ++ Sbjct: 354 SRLAYAEEETFLRTLSGGTTILDVAVGETKAKGGERIAGDTAFLLHDTFGFPIDLTLEMA 413 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D +F++ + EQR+RA+A + + + +S G T+F GYD L Sbjct: 414 EENGLT-VDREAFDRLMLEQRTRAKADAKSKKTALADLTVYSEFRAAGETRFTGYDELE- 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + ++ G V+ AV+G EV+ +T YAE+G Sbjct: 472 ----------------------TGTTILGLIVGGRSVDHAVAGDIAEVILPETSLYAESG 509 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ D G +G G L++ DVQK +G+ H V G + + +D RR + Sbjct: 510 GQEADAGSIVGQGFDLEVLDVQKPVKGLISHRVQVRSGEVGVGDAATTVVDADWRRGATQ 569 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS THL+H AL +LG Q+GS +R D ++ ++S IED N + Sbjct: 570 AHSGTHLVHAALRQVLGQDAHQSGSYNRAGYMRLDFAWNQALSSETRSEIEDIANGAVRD 629 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +L VVTR+M ++A GA AL G KY D VRVV + GG S LC GTHVSS+ +I Sbjct: 630 DLRVVTRVMPIDEAKQLGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVSSSAQI 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ +V ESS+ + RRIE++ G+ A L + + L S LK + + R+ ++ + Sbjct: 686 GLINVVGESSVGSTNRRIESLVGREAFQDLAVERAIVSQLTSTLKTPREQLPDRIADLMQ 745 Query: 766 EYRKLQ 771 + + Sbjct: 746 NLKTAE 751 >gi|225620397|ref|YP_002721654.1| alanyl-tRNA synthetase [Brachyspira hyodysenteriae WA1] gi|225215216|gb|ACN83950.1| alanyl-tRNA synthetase [Brachyspira hyodysenteriae WA1] Length = 867 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 303/856 (35%), Positives = 479/856 (55%), Gaps = 66/856 (7%) Query: 20 HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDN 79 H + SSSLIP +DP+L+FT +GM+ FK + G +K Y V T+QKC R +DL+N Sbjct: 19 HAIEKSSSLIPIDDPSLLFTTAGMLQFKPYYAGIKKAPYSRVATIQKCFRL----SDLEN 74 Query: 80 VGRTNRHHTFFEMLGNFSF-GGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFK 138 +G+T RHHTFFEM GNF F G YFK+ AI+ AW+ T+ L R+Y+++Y++D++AFK Sbjct: 75 IGKTARHHTFFEMFGNFCFMGDYFKKEAIEFAWEFSTQVIKLPIERIYVSIYEKDDDAFK 134 Query: 139 LWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFFDQGECIPGGLPGS--SEEGE 195 +W + G+ +KI+R+ DNFW A ++G CGPCSE++ D GE G P + E Sbjct: 135 IWNEHIGVPKEKIVRLGKKDNFWGPAGDSGACGPCSELYIDMGEEKGCGKPDCFVGCDCE 194 Query: 196 RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA 255 RY+E WNLVF +F Q + LP + IDTGMGLER+ + Q +NY D+ K ++ A Sbjct: 195 RYLEFWNLVFNEFFQDTEGNLSPLPNVGIDTGMGLERLCYITQGVESNYQTDVMKPIVDA 254 Query: 256 SEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 + +KY+ N +I DHLR+ F+I++G P+NEGRGYVLRR++RRA+ A L Sbjct: 255 IAKKLNVKYDDKNKTKINLIADHLRALVFVISEGCTPSNEGRGYVLRRLLRRALKTASDL 314 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 G+ + + ++ Y L + + ++ L+ E+ +F T+ G+ L V+ Sbjct: 315 GHKGSFLNEITSSVVNVYKEIYDYLPKEEENVKRILKDEENKFINTISAGMNKLYAVMEE 374 Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435 ++++G AF L+DT+GLP+DI ++ G +D F +A+EEQ+ R+R Sbjct: 375 NKDSKVISGKDAFMLFDTYGLPIDITEEEASDHGFT-VDKAGFEEAMEEQKKRSR----- 428 Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495 G+G ++ F E Y T+++G + +L NGV++ + A+ Sbjct: 429 -GAGEDKRSKFGYVENY-ETKYVG-------------------EETDNLINGVNAKIIAV 467 Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR--LQITDVQKKAEGI 553 + ++ S V ++ D +PFY E GGQ+GD G I + + ++I D QKK E Sbjct: 468 YEDNAKKDKTSSSNAV-IITDVSPFYGEMGGQIGDNG-YIENSKKEIIKIIDTQKK-ENT 524 Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613 +H A L + L +++ R + NH+ATH+L L LG+HV+Q GS ++ Sbjct: 525 IIHIADCSSHSLSVGEEIKLFVNFDRRSAIRKNHTATHILQKVLELTLGNHVNQAGSFVS 584 Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673 + LRFD TH I+ L SIE+ VN+++ +++P V + M +E+AIA GA AL G KY Sbjct: 585 DEYLRFDFTHPDSISEDTLISIENQVNEVVFKSMPAVIKYMPKEEAIACGAKALFGEKYP 644 Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 D VR++ + G S LCGG+H+++T E+ +IVSE S+ +G+RRIEAITG +A + Sbjct: 645 DTVRILDI----GNGFSVELCGGSHLTNTSEVGYFHIVSEGSVASGVRRIEAITGLKAAN 700 Query: 734 HLMGQDEKLKSLASFLKVSQGN-VVGRVEEIWEEYRKLQLIHAKRK--------LQLNVE 784 K+K+LA L S+ + + R E + E +KLQ + K N E Sbjct: 701 EASKLFSKVKNLAHILNASKTDELTVRAESLQNEVKKLQKEIKQLKTSGASAVSFMDNFE 760 Query: 785 DLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844 DL K ++ F I KE++ D ++++++ I +++ + + S+L+ +T Sbjct: 761 DLKGIKFYNLEFNDDI------KEVRLYADTIKERVKDSIAVMISKT-DSSNSILVQITG 813 Query: 845 DLLDRFNAVDLARLSA 860 NA+ +LSA Sbjct: 814 ------NALKEKKLSA 823 >gi|291301348|ref|YP_003512626.1| alanyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728] gi|290570568|gb|ADD43533.1| alanyl-tRNA synthetase [Stackebrandtia nassauensis DSM 44728] Length = 885 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 324/917 (35%), Positives = 486/917 (52%), Gaps = 65/917 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I+ FL F+ NGH ++PS+ L DP L+F N+GMV F FTGQ+ P + T+ Sbjct: 3 TAEIKRRFLAHFEANGHTVVPSAPLPAIEDPNLLFINAGMVQFVPYFTGQQTPPWTRATS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKC+R D++ VG T RH TFF+M GNFSFG YFKE+AI+LAWDL+T+ Sbjct: 63 VQKCIRT----PDIEEVGITTRHGTFFQMNGNFSFGDYFKEKAIELAWDLMTRPQSQGGL 118 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D+ +LY +VY +D+EA LWK+I+GL ++I R+ ++NFWSM GPCGPCSEI D Sbjct: 119 GFDESKLYPSVYVDDDEAIGLWKRIAGLPDERIPRLGKSENFWSMGIPGPCGPCSEILLD 178 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMGLER 232 G G G G+RY+E+WNLVFMQ E NK++ IL P +IDTGMGLER Sbjct: 179 LGPEF--GEEGDFLNGDRYMELWNLVFMQNLRGEGTNKEDFEILGDLPAKNIDTGMGLER 236 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGI 290 +A +LQ N ++ID + LI + ++TG +Y + + V RVI DH+R+ LI DG+ Sbjct: 237 VAYMLQGVNNMFEIDEVRPLIDRASELTGKRYGASRPDDVRFRVIADHVRTGLMLIGDGV 296 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+NEGRGYVLRRI+RRA+ RLLG+ + + LLP M +YPEL + I Sbjct: 297 TPSNEGRGYVLRRILRRAIRAIRLLGFEDKALPELLPVARDCMSPSYPELSEDFERISSY 356 Query: 351 LRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E+E F TL +G +LD + + +L G AF+L+DT+G P+D+ ++ + Sbjct: 357 AYGEEEAFRSTLRQGTTILDTAVKDTKASGGTLLPGAKAFELHDTYGFPIDLTLEMAAEQ 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D F Q + EQR RA+A + + + + L G T + Y+ L Sbjct: 417 GLK-VDEEGFRQLMAEQRRRAKADAQSRKTAHADMSAYRELLTAGGPTDWKAYETLN--- 472 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S V ++ +G ++ A GQ VEVV D+TPFYAE+GGQ Sbjct: 473 --------------------TESTVLGMLAEGSPIQVAKEGQLVEVVLDKTPFYAESGGQ 512 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G G + ++ DVQ+ +G+ VH V +G L ++ +D + R H Sbjct: 513 HADAGTITGASVSAEVVDVQRPIKGLVVHQVRVLKGELAVGTAVKADVDPEWRLGARQAH 572 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 S TH++H AL +LG Q+GS P LR D + ++ +E+ N + ++L Sbjct: 573 SGTHVVHAALREVLGPAALQSGSFNRPGYLRLDFSWRSKLSDESRSEVEEAANRAVRKDL 632 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 PV + M +A GA AL G Y++ VRVV + GG S LCGGTHV +I Sbjct: 633 PVAVKYMTLPEAREFGALALFGETYDETVRVVEI----GGEWSRELCGGTHVQHAAQIGP 688 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEY 767 + I SE+S+ +G RR+EA+TG A +L + + + +A L + + R+ + + Sbjct: 689 VVITSEASVGSGQRRVEAVTGLEAFHYLARERDLVSQIADELGAPRAELPERISALMQRA 748 Query: 768 ----RKLQLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISE----VDSKELKSVMDALQ 817 ++L + AK +L+ + + KI DV + + D+++L + + Sbjct: 749 KDAEKELANLRAK-ELRDSAATFAAQAKKIGDVAVAAVQAPDGTGGGDARKLATEIRGHL 807 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + GI + + K + V+IV +A L + + G GGG +AQ Sbjct: 808 DPNKPGIAAVAATAGGKASLVVIVNKTGTAQGLSAQALVKGALS----GRGGGNDEVAQG 863 Query: 878 GGPNGNKADQAIAGVAS 894 GG ++A + V++ Sbjct: 864 GGVPADQASALLQAVSA 880 >gi|319442138|ref|ZP_07991294.1| alanyl-tRNA synthetase [Corynebacterium variabile DSM 44702] Length = 911 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 331/935 (35%), Positives = 485/935 (51%), Gaps = 89/935 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ--AVTTV 64 IR F+ + K GH +PS+SLI +DP L+F N+GMVPFK F G++ P + T++ Sbjct: 6 IRERFINHYVKAGHAEVPSASLI-LDDPNLLFVNAGMVPFKPYFLGEQNPPFPNGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT D Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAISHAWSLLTDPVDEGGFG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD+ RL++TVY +D+EA ++W + G+ ++I R+ DN+WSM GPCGPCSEI++D+ Sbjct: 121 LDKDRLWVTVYLDDDEAAQIWHEKIGIPEERIQRLGMADNYWSMGVPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNK--QERF----ILPKMSIDTGMGLERM 233 GE G G + RYIE+WNLVFMQ E+ ++ F LPK +IDTGMG+ER+ Sbjct: 181 GEEY-GEYGGPVVDDTRYIELWNLVFMQNERGKGIGKDDFEIVGPLPKKNIDTGMGVERV 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-------------------EGNNIVNHRV 274 A +LQ N Y+ DL +I+ +E +TG Y + + RV Sbjct: 240 ACILQGVENVYETDLLAPVIKVAEDLTGATYGRSEQLIKAGDTESADYHAAHTDDIRFRV 299 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334 I DH R+ LI DG+ P NEGRGY+LRR++RR + ARLLG T M L+ + + M Sbjct: 300 IADHCRTGLMLILDGVTPGNEGRGYILRRLLRRIIRSARLLGATGVTMEKLMDTVRSTMT 359 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYD 392 +YPE+ I E+ F KTL+ G L + V + + + L+GD AF L+D Sbjct: 360 PSYPEIADNWERIRAVAVGEETAFLKTLESGTRLFETVAAQVKGSGLTELSGDAAFSLHD 419 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 THG P+D+ ++ GL +D F+ + EQ++RA+A + + + Sbjct: 420 THGFPIDLTVEMAAESGLT-VDKEGFDARMAEQKARAKADNRAKKHDHADVAVYRPFVDN 478 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 T F+GYD T SI+ IV G +VE A GQKV+ Sbjct: 479 HPTVFLGYDS----------------------TEAEGSIL-GIVAGGALVERAGEGQKVQ 515 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 ++ DQTPFYAEAGGQL D G G G + DVQK + +++H+ V G + Sbjct: 516 LILDQTPFYAEAGGQLADRGQITGTGGAATVDDVQKTGKKVWLHNVTVTGGEFAVGQRVT 575 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 T+D+ R + HS TH++H AL +LG Q GS P LRFD + + +T+ +L Sbjct: 576 ATVDHTWRHKARQAHSGTHMIHAALRQVLGPTAVQAGSLNKPGYLRFDFNYGEQLTADQL 635 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 + IE N+ + + V T + ++A A GA AL G Y VRVV + GG S Sbjct: 636 RRIELIANEAVDADYQVNTIETSLDEAKAMGAMALFGENYGAEVRVVEI----GGPFSME 691 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LCGG HV + +I + ++ ESS+ +G+RRIEA +G + L Q + +LAS L++ Sbjct: 692 LCGGIHVEHSSQIGPVAVLGESSVGSGVRRIEAYSGVDSFRFLSDQHKLSGALASQLRIP 751 Query: 753 QGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD------- 805 + RVE + + + KR Q +LS K+ D + ++ ++ Sbjct: 752 SEELPDRVEALTTRLNEAE----KRIAQFRTAELSA-KVGDYLLQATMVGDIRVVAARVP 806 Query: 806 ----SKELKSVMDALQKKIQS--GIIMLVGISKE--KKASVLIVVTEDLLDRFNAVDLAR 857 + +L+++ + + S G+I + E K + + A D+ + Sbjct: 807 DGIVAGDLRTLATEAKSRAGSDAGVIFFISSDPESGKVPFIAAATDAAVAAGVKAGDIIK 866 Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 A + GG GGG+P MAQ G + D A+ V Sbjct: 867 TVAPYV-GGRGGGKPAMAQGSGSDAAGIDAAVKAV 900 >gi|284991581|ref|YP_003410135.1| alanyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160] gi|284064826|gb|ADB75764.1| alanyl-tRNA synthetase [Geodermatophilus obscurus DSM 43160] Length = 897 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 329/923 (35%), Positives = 492/923 (53%), Gaps = 61/923 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR FLE F GH ++PS+SL+ DP+L+FT +GMVPF TG+E Y T Sbjct: 2 QTAEIRRRFLEHFASRGHTVVPSASLV-SPDPSLLFTVAGMVPFIPYLTGREPAPYPRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD--- 119 +VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AIQ AW+L+T D Sbjct: 61 SVQKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAIQHAWELVTGSVDDGG 116 Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 D R+++TVY +D+EA + W +I+GL ++I R+ DN+W + GP GPCSEI++ Sbjct: 117 LGFDPERIWVTVYLDDDEAAEAWHRIAGLPVERIQRLGKKDNYWHTGQPGPGGPCSEIYY 176 Query: 178 DQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFI----LPKMSIDTGMGL 230 D+G P G P G+R++EIWNLVFMQ+E + +E F LPK +IDTGMGL Sbjct: 177 DRGPQFGPDGGPLVDTAGDRFLEIWNLVFMQYELTDVRSKEDFRIVGELPKKNIDTGMGL 236 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ N Y+ID ++ + ++ G+ Y + ++ V RV+ DH+RS LI D Sbjct: 237 ERVAYLLQGVDNLYEIDEVAPVLHRAAEIAGVTYGAKHDDDVRLRVVADHVRSGLMLIGD 296 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGY+LRR++RRA+ +LLG E + LLP M ++YPEL I Sbjct: 297 GVTPGNEGRGYILRRLLRRAVRSMKLLGVDEATLPALLPVSRDAMKASYPELETDFARIS 356 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+E F +TL G L D + + L+GD AF L+DT+G P+D+ ++ Sbjct: 357 SVAYAEEEAFRRTLSSGTALFDTAVREARAAGTASLSGDQAFSLHDTYGFPIDVTLEMAA 416 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDLLRG 465 +G+ +D F +++QR RARA + +G+ + + + L +G T + YD LR Sbjct: 417 EQGVT-VDEEGFRALMQQQRDRARADARAKRTGSVDVLAYRRLLADHGPTDWRAYDTLR- 474 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 D +VL G+ S + A ++G A G+ VV D+TPFYAE+G Sbjct: 475 -----TDSRVL----------GLVSELAA--EEGPTSTPAGPGEITRVVLDRTPFYAESG 517 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ D G DG R ++ DVQ+ +G+ H V G LR L +D + R Sbjct: 518 GQVADAGVLTWDGGRAEVLDVQRPVKGLVAHQVRVLEGELREGAELTAEVDREWRLSACQ 577 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG Q+GS P LR D +++ + IED N + Sbjct: 578 AHSGTHVVHAALRQVLGPQALQSGSYNRPGYLRLDFAWQGALSAQQRHDIEDVANAAVRA 637 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V M +A A GA AL G Y ++VRVV + GG S LCGGTHV + +I Sbjct: 638 DHRVSATYMTLPEAQAFGALALFGETYGEQVRVVEI----GGPWSRELCGGTHVQGSAQI 693 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L + ESS+ +G RR+EA+ G +L + + ++ L LK ++V RV + Sbjct: 694 GTLALTGESSVGSGSRRVEAVVGLEGFRYLARERDLVRQLGELLKTPTDDLVERVSGMLA 753 Query: 766 EYRKLQLIHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 R + A+ + Q + V ++ + + +L+++ ++ ++ Sbjct: 754 RLRDVDKELAELRAQQTLAAAGELAAGARDVGGVAVVTGAPTGLAGGDLRTLALDVRGRL 813 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + +V ++ E V +V + + A D+ R +A + GG GGG+P +AQ Sbjct: 814 SADRPAVVLLASESGGKVALVTALNPAAQARGLTASDVLRAAAAPV-GGRGGGKPDVAQG 872 Query: 878 GG--PNGNKA-----DQAIAGVA 893 GG P G A +QA+A A Sbjct: 873 GGTDPAGIPAALQAGEQAVATAA 895 >gi|91217166|ref|ZP_01254128.1| alanyl-tRNA synthetase [Psychroflexus torquis ATCC 700755] gi|91184766|gb|EAS71147.1| alanyl-tRNA synthetase [Psychroflexus torquis ATCC 700755] Length = 872 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 320/833 (38%), Positives = 458/833 (54%), Gaps = 80/833 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FLEFF+ H ++ S+ ++ +DPTLMF N+GM FK F G P VT QK Sbjct: 6 LRRQFLEFFKSKSHTIVNSAPIVLKDDPTLMFINAGMNQFKPYFLGNSIPKETRVTDSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG+ HHT FEMLGN+SFG YFK+ AI AW+ LT ++ + LY Sbjct: 66 CLRVSGKHNDLEEVGKDTYHHTMFEMLGNWSFGDYFKKEAIDWAWEFLTDVLEISKDNLY 125 Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T+++ +D EA+ LWK + + DKI+ DNFW M + GPCGP SEI D Sbjct: 126 VTIFEGDKVDGLQKDSEAYDLWKTL--VKEDKILLGDKKDNFWEMGDQGPCGPASEIHVD 183 Query: 179 -QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + + +PG + + + +EIWNLVF+Q+ ++ LP IDTGMG ER+ Sbjct: 184 LRSKEEKAKIPGKDLVNRDHPQVVEIWNLVFIQYNRKADGSLESLPAKHIDTGMGFERLC 243 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291 V+Q KT+NYD D+F LI+ E +TG Y E +I RVI DH+R+ +F IADG L Sbjct: 244 MVVQGKTSNYDTDVFTPLIREIETITGTTYGKTEDTDIA-IRVISDHIRAVTFAIADGQL 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RRA+ Y L P + L+ L +MG A+PELI K L E Sbjct: 303 PSNTGAGYVIRRILRRAIRYGFTFLNIQTPFIYKLVEVLSKQMGDAFPELISQKNLCENV 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + E++ F KTL++GL LLD +++ +I++G AF+LYDT G P+D+ IL +G Sbjct: 363 IHEEEKSFLKTLEQGLGLLDSIVNE-SSSKIISGQKAFELYDTFGFPIDLTTLILSEKGY 421 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 A +D F L++Q+ R++A + T+ W LK +FIGYD + Sbjct: 422 A-LDQKGFEVQLQKQKQRSKA-----AAQTSSSDWVVLKTD-DQGEFIGYDDTEADVSIT 474 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 + RKV +K G+ ++VF+ TPFY E GGQ+GD Sbjct: 475 KYRKVTSKK---------------------------EGELYQLVFNLTPFYPEGGGQVGD 507 Query: 531 TG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 G +G + + D +K+ I +H L+ + V +D R++ + NH+A Sbjct: 508 KGYLETPNGDTVFVIDTKKENNQI-IHITKSLPKDLQKDFKAV--VDLSQRQRTASNHTA 564 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLLH AL +ILG+HV Q GS + LRFD +H +T EL++IED VN I +NL Sbjct: 565 THLLHQALRSILGTHVEQKGSMVHSGYLRFDFSHYSKLTQEELQAIEDFVNARIKENLTF 624 Query: 650 -VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 R + + AI GA AL G KY D VR V +S LCGGTHV +T ++ Sbjct: 625 EEERTIPYDVAIDKGAIALFGEKYGDTVRFVKFG------NSKELCGGTHVENTSKLWHF 678 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I +E+S+ +GIRRIEAIT A+ L + + L + S L Q +V+ VE + EE Sbjct: 679 IINNEASVASGIRRIEAITSDAAKEFLTKESDVLSQVKSILNKPQ-DVLKSVESLQEENT 737 Query: 769 KLQLIHAKRKLQLNVEDLSCHK------IADVN---FMSHIISEVDSKELKSV 812 L+ K QLNV L K + D+N F++H ++ +D+ +K + Sbjct: 738 TLK----KEIEQLNVLKLKQVKTEVQSQLKDINGIQFLAHQVN-LDANAMKDL 785 >gi|159476100|ref|XP_001696152.1| hypothetical protein CHLREDRAFT_119554 [Chlamydomonas reinhardtii] gi|158275323|gb|EDP01101.1| predicted protein [Chlamydomonas reinhardtii] Length = 879 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 334/917 (36%), Positives = 476/917 (51%), Gaps = 65/917 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL F++ GH LPSSSL+P DPT++ T +GM+ FK +F GQ TT Sbjct: 3 AEIREAFLSFYESKGHTRLPSSSLVP-EDPTVLLTIAGMLQFKPVFLGQAPRKVATATTT 61 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR ND+ NVG T RHHTFFEMLGNFSFG YFKE+AI+ AW+L T F L R Sbjct: 62 QKCVRT----NDIGNVGVTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTGVFGLPAER 117 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 ++++VY+ED EA +W+ + G++ ++I R+ DNFWS TGPCGPCSE+++D P Sbjct: 118 VWVSVYEEDAEAEAIWRDVVGVAPERIKRMGAADNFWSSGPTGPCGPCSELYYD---FHP 174 Query: 185 --GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G S E+ R+IE +NLVFMQ + L +IDTGMGLERMA +LQ +N Sbjct: 175 ERGTQDASLEDDSRFIEFYNLVFMQLNRCPDGSLEPLAAKNIDTGMGLERMAQILQGVSN 234 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL ++ + + G+ Y +VI DH R+ +++++DG+ P+N GRGY Sbjct: 235 NYETDLIFPIVAKAAAIAGVDYASAQPAVKTALKVIGDHTRAVTYMLSDGVTPSNTGRGY 294 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RR + RLLG E + + P + + I + L E+ F Sbjct: 295 VLRRLLRRVVMKGRLLGIREVFTPAVAEVAVALSAACDPAVQRNAQRIYDELAREESLFA 354 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDV-AFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL+RG LD L AF LYDT G PL++ Q++ ARG+ +D+ F Sbjct: 355 TTLERGQKQLDEYLDRAAAGGKAIAGPDAFMLYDTFGFPLELTQELAEARGV-DVDVSGF 413 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 +E QR R++ L T + +L G T F GY RG Sbjct: 414 EAEMEAQRQRSKDSRETL-DLTAQAGLAALAAAVGPTAFTGYSATRG------------- 459 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + V+ +++ G VE +G + EV+ D TPFYAE+GGQ+GD G G Sbjct: 460 ----------AGRVRGLMRGGAPVEVVEAGDRCEVLLDSTPFYAESGGQVGDMGVLTAHG 509 Query: 539 -----IRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 L ++D QK A G +FVH V+ G LR + +D RR++ +H+ATHL Sbjct: 510 SGEAAAELSVSDCQKAAGGSVFVHTCEVKAGQLRVGDQVTALVDEDLRRRVRAHHTATHL 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG Q GS LRFD ++ +T+AE+ +E VN +A P+ TR Sbjct: 570 LQSALKAVLGPDTCQQGSLCNFQRLRFDFNLARGMTAAEVAEVERLVNGWVAAAAPLETR 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ A A+GA A+ G KY+D VRVV V G+ S LCGGTHV++T EI I+S Sbjct: 630 VMDLAAAKAAGATAMFGEKYDDTVRVVDVP----GI-SMELCGGTHVANTAEIGAFKILS 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 ES I +GIRR+EA+ G A +L D ++ L+ LK+ V RV + E R+ Sbjct: 685 ESGIASGIRRVEAVAGPAAVEYLNQVDGLVRGLSGQLKLKPEEVPARVSAMQAELREAAK 744 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A K QL V + + +V EL ++A K +Q + L Sbjct: 745 QLADLKAQLAVA--QSQALVSQAVTAPQGGKVLVAELAGGVEA--KALQEAAVKLQEALG 800 Query: 833 EKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG-----------RPHMAQSGGPN 881 + A VL +D ++ A + A V G G +P +AQ+GG + Sbjct: 801 DPAAVVLASRVDDKVNFVAAFSAGAVKAGVQAGKLVGAVAKVCGGGGGGKPALAQAGGKD 860 Query: 882 GNKADQAIAGVASFLKK 898 +K +A+A + L + Sbjct: 861 ASKTSEALALASKMLNE 877 >gi|152966976|ref|YP_001362760.1| alanyl-tRNA synthetase [Kineococcus radiotolerans SRS30216] gi|205830072|sp|A6WCF7|SYA_KINRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|151361493|gb|ABS04496.1| alanyl-tRNA synthetase [Kineococcus radiotolerans SRS30216] Length = 893 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 336/927 (36%), Positives = 510/927 (55%), Gaps = 76/927 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR +L+FF++ H ++PS+SL+ +DP+LMFT +GMVPF T Q Y+ T Sbjct: 2 QTAEIRRRWLDFFERKEHTVVPSASLV-SSDPSLMFTVAGMVPFIPYLTAQVPAPYKRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEFD-- 119 +VQKC+R D+D VG+T RH TFF+M GNFSFG YFK A+ AW+LLT E D Sbjct: 61 SVQKCLRT----LDIDEVGKTTRHGTFFQMNGNFSFGDYFKREAVAFAWELLTTPEADGG 116 Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 D RL+ TVY +D+EAF+LW+++ G+ A++I R DN+W+ + GP GPCSEI+F Sbjct: 117 LGFDPERLWTTVYLDDDEAFQLWREV-GMPAERIQRRGKADNYWNTGQPGPGGPCSEIYF 175 Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLE 231 D+G G G + +RYIEIWNLVFMQ++ + + LP +IDTGMGLE Sbjct: 176 DRGPAY-GAEGGPEADEDRYIEIWNLVFMQYQLSAVRTKVDFDVEGELPAKNIDTGMGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLRSSSFLIADG 289 R+A + Q N Y+ID + ++ + +++G +Y + V RV+ DH+RS+ LI DG Sbjct: 235 RVAFLKQGVDNMYEIDEVRPVLDKAAELSGRRYGAVHEDDVRMRVVADHVRSALMLIGDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P NEG GYVLRR++RRA+ RLLG EP + HLLPA M ++YP+L I Sbjct: 295 VTPGNEGAGYVLRRLVRRAVRAMRLLGVEEPALPHLLPASMEVMSASYPQLRSDFERISA 354 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +E++ F +TL G + + ++ L+G+ AF L+DT+G P+D+ ++ Sbjct: 355 VAYAEEDAFRRTLVSGTAIFETAVAQTKAAGGSSLSGERAFALHDTYGFPIDLTLEMAAE 414 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGYDLLRG 465 G+ G+D F + EQ RA+A + +G + I+ S E+ A F GY+ G Sbjct: 415 AGV-GVDEPGFRALMAEQVGRAKADAKAKKTGGVDLAIYRSTLEQLPAPVVFTGYEAAAG 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + ++Q G A +G VEVV D+TPFYAE G Sbjct: 474 E-----------------------ARISVVLQGGVSTPSAPAGTDVEVVLDRTPFYAEGG 510 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G G L ++DVQ+ G++VH V G L ++ +D RR +S Sbjct: 511 GQLADHGTVTTTSGAVLAVSDVQQPVRGLYVHKGTVTSGELVAGDAVHAVVDAGRRRSIS 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 H+ATHL+H + LG +Q GS P +RFD + + ++ IE VN+ I Sbjct: 571 RAHTATHLVHQVVREHLGDTATQAGSQNAPGRMRFDYRSTAQVAGDVVRDIEAVVNERIH 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +L V +M+RE A+ SGA AL G KY ++VRVVS+ G S LCGGTH ++ + Sbjct: 631 DDLEVSAAVMDRESALNSGAMALFGEKYGEKVRVVSI----GEDWSKELCGGTHTLTSQQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRA-----RSHLMGQD--EKLKSLASFLKVSQGNVV 757 + L+ IVSESSI +G RRIEA+ G A R HL+ E +K+ L G ++ Sbjct: 687 VGLVSIVSESSIGSGARRIEALVGADAFDFLTREHLLVNQLTEVVKARPEELPDRIGALL 746 Query: 758 GRVEEIWEEYRKL---QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD 814 R+ + +E +L Q++ L + K V ++H V + +L++++ Sbjct: 747 TRLGDAEKEIARLRGGQVL----ALAPTIAAKPVDKFG-VRVVTHDAGPVSADDLRTLVL 801 Query: 815 ALQKKI---QSGIIMLVGISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGGGGGG 869 ++ ++ + ++ + G++K++ V++V T R+ A +L R +AK L GGGGG Sbjct: 802 DVRSRLGEERPSVVAVAGVAKDRP--VVVVATNAEARRWGVKAGELVRTAAKTL-GGGGG 858 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 G+ +AQ GG + +K A+ G+ F+ Sbjct: 859 GKDDLAQGGGQDPSKVPAALQGIEDFV 885 >gi|254445806|ref|ZP_05059282.1| alanyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235] gi|198260114|gb|EDY84422.1| alanyl-tRNA synthetase [Verrucomicrobiae bacterium DG1235] Length = 883 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 332/922 (36%), Positives = 477/922 (51%), Gaps = 100/922 (10%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +FL+FF H ++PS+SL+P + P L+FTN+GM F F G+ + +T Sbjct: 4 NQIRQSFLDFFASKQHAIVPSASLMP-DAPNLLFTNAGMNQFVPYFLGERESANPRITDT 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+RAGGKHNDL++VG HHTFFEMLGN+S G YFK+ AI+ AW+L+T+ + + R Sbjct: 63 QKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSIGDYFKQEAIEWAWELITEVWKFPKER 122 Query: 125 LYITVYDE--------DEEAFKLWKKI---SGLSAD-KIIRITTNDNFWSMAETGPCGPC 172 LY TVY D+EA+ WK I +GL II DNFW M +TGPCGPC Sbjct: 123 LYATVYKPGEGDPATFDQEAYDFWKAIFEKAGLDPKVHIIYGNKKDNFWMMGDTGPCGPC 182 Query: 173 SEIFFDQGECIPGG-LPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SE+ D P G GS + + IEIWNLVF+QF + + L +DTGMG Sbjct: 183 SELHID---LTPAGDTKGSLVNADSPYCIEIWNLVFIQFNATPEGDFVPLKNQHVDTGMG 239 Query: 230 LERMATVLQEKTN---------NYDIDLFKHLIQASEQVTGMKYEGN------NI----- 269 ER+A ++ N NY+ DLF L Q E+++G Y+ NI Sbjct: 240 FERVAGIMATSKNFTDFSTPPSNYNSDLFDTLFQEFEKLSGHTYQRTLPEDLENISEVEM 299 Query: 270 --VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327 V RV+ DH+R S IADGILP NE R YVLRRI+RRA+ Y R LG L+P Sbjct: 300 KDVIFRVLADHIRCLSCSIADGILPGNESRNYVLRRILRRAVMYGRKLGLENGFFAQLVP 359 Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVA 387 + ++G +PEL + +I++ ++SE++ FG+TLDRG+ L D + S +D+I +G A Sbjct: 360 IVVAQLGHVFPELKAQEEIIQKIIKSEEDAFGRTLDRGIQLFDKIASE--QDQI-SGLDA 416 Query: 388 FKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS 447 F LYDT+G P+D+ Q + R + +DI F +E++R +++ G+ + + Sbjct: 417 FTLYDTYGFPIDLTQLMARQRNMK-VDIAGFEAEMEKRRQQSKD-----GAKAAQILIAE 470 Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507 + T+F+G++ L ED ID+ G Sbjct: 471 RENDAEPTRFVGFNTL-----ADEDEL-------IDVVKG-------------------E 499 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE-RGILR 566 +VF+ +PFYAE GGQ+GDTG + + D K A G F+H + IL Sbjct: 500 NNSSYLVFNHSPFYAEMGGQVGDTGSIEFEDRHFDVLDTIKDANGRFLHKVSGDAENILG 559 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 +L+ +D + RR + +HSATH+LH AL +LG+HV Q GS + LRFD H + Sbjct: 560 HHANLI--VDVKRRRSIERHHSATHVLHWALRKVLGTHVHQAGSYVDDQRLRFDFAHFEA 617 Query: 627 ITSAELKSIEDNVND-IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685 I +L IE N+ ++A N V + A G KY D VRVV + Sbjct: 618 IKPEQLALIEKLCNEQLLANN--KVNWYETPFNEKPKEVIAFFGDKYGDVVRVVDI---- 671 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 G S LCGGTHV +TGEI LL I SES I AG RRIEAI G SH+ + + S Sbjct: 672 -GGFSIELCGGTHVRATGEIGLLKIASESGIAAGTRRIEAIVGDSLYSHINDMEATIASA 730 Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISE 803 + L + ++ +++ + +L QL ++K N+ D + N + + ++ Sbjct: 731 SKSLSTAPNELIKKIDIVLARNAELEKQLKSFQQKASGNLADDLLKSATETNGLKLVAAK 790 Query: 804 V---DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LS 859 V D L+ + L K+ G+++L K K + V E + A D+ R L+ Sbjct: 791 VTASDPNALRQLGATLIGKLGEGVVVLGAEVKGKVSVVAFSSQEAVKAGHKAGDIIRDLT 850 Query: 860 AKVLGGGGGGGRPHMAQSGGPN 881 AK+ G GGG+P A G N Sbjct: 851 AKL--DGRGGGKPDFAMGGATN 870 >gi|330752116|emb|CBL87077.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium] Length = 870 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 342/923 (37%), Positives = 497/923 (53%), Gaps = 86/923 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF H+++PS+ ++ NDPTLMFTN+GM FK F G V Sbjct: 4 AEVRQQFLDFFASKTHKIVPSAPMVVKNDPTLMFTNAGMNQFKEFFLGNSISKNVRVADT 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R GKHNDL+ VG HHTFFEMLGN+SFG YFKE AI AW+LL + +D Sbjct: 64 QKCLRVSGKHNDLEEVGIDTYHHTFFEMLGNWSFGDYFKEEAIAWAWELLVDVYKIDPSI 123 Query: 125 LYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LY+T+++ +D EA+ W+KI L D+I+ +DNFW M + GPCGPCSEI Sbjct: 124 LYVTIFEGHEGDGLAKDTEAYDFWEKI--LPEDRILLGNKHDNFWEMGDQGPCGPCSEIH 181 Query: 177 FD-----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 D + + I G + + + +E+WNLVF++F ++ + LP +DTGMG E Sbjct: 182 VDMRSTEEKKAISGASLVNMDH-PQVVEVWNLVFIEFNRKADRSLEKLPAQHVDTGMGFE 240 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADG 289 R+ VLQ KT+NYD D+F LI E T + Y ++ RVI DH R+ F +ADG Sbjct: 241 RLCMVLQNKTSNYDTDVFTPLISKIEVKTNLVYGKEETIDCAMRVIADHARTVFFAVADG 300 Query: 290 ILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 LP+N G GYV+RRI+RRA+ Y L EP + L+ L T+MG+ + EL K L + Sbjct: 301 QLPSNTGAGYVIRRILRRAIRYGYTFLDLKEPFIFRLVETLETQMGAVFSELKAQKELAK 360 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +R E+ F KTL++GL+LLD ++S K L G+ F+LYDT+G PLD+ I + Sbjct: 361 NVIREEEVSFLKTLNQGLLLLDDLISKT-KGNKLKGEQVFELYDTYGFPLDLTALIAREK 419 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 G A +D F +A+ Q+SR+RA S TE T F+GYD L S Sbjct: 420 GFA-VDEAGFEKAMAVQKSRSRAASSSSAEDWTE------INDMPITGFVGYDDLEHSVQ 472 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + RK+ N V SG++ ++VF+ TPFY E GGQ+ Sbjct: 473 LVRYRKI----------NSVK-----------------SGEQFQLVFNATPFYPEGGGQV 505 Query: 529 GDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 GD+G +G DG + I D KK + VH + T+ + + +D + R + NH Sbjct: 506 GDSGILLGSDGDIITIEDT-KKENNLIVH--FTKTLPKNTQNTFIAKVDAKERFRSKCNH 562 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 SATHL+H ALST+LG+HV Q GS + LRFD +H +++ E+K++E VN I + + Sbjct: 563 SATHLMHQALSTVLGTHVEQKGSMVHGANLRFDFSHFAKLSADEIKAVEAFVNARINEKI 622 Query: 648 PV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 + R + +A+ASGA AL G KY D VR + S LCGGTHV +T +I Sbjct: 623 VLEENRSVPVAEAMASGAMALFGEKYGDSVRTIRFG------ESIELCGGTHVKNTADIW 676 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV--------- 757 IVSES++ +GIRRIEAITG+ +++ Q+ L + LK Q + Sbjct: 677 HFKIVSESAVASGIRRIEAITGEAVQAYFESQEAILNHINENLKHPQDPIKAISSLQAEN 736 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD--SKELKSVMDA 815 +++ E+ KLQ+ K++LQ ++ VN + + +EVD +K + Sbjct: 737 ALLKKEIEKLSKLQIQAVKQELQ--------SQLKSVNGIDFLAAEVDLSPPAIKDLSFE 788 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 L + + ++LV K + E + +R NA + + K + GGGGG+P Sbjct: 789 LGQGKNNTFLVLVTRKGGKPVISCYISKELVAERSLNAGAVVKDLGKHI-QGGGGGQPFF 847 Query: 875 AQSGGPNGNKADQAIAGVASFLK 897 A +GG N + +A ASF++ Sbjct: 848 ATAGGKNTDGISAVLAASASFIE 870 >gi|170781160|ref|YP_001709492.1| alanyl-tRNA synthetase [Clavibacter michiganensis subsp. sepedonicus] gi|205830026|sp|B0REK2|SYA_CLAMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|169155728|emb|CAQ00849.1| alanine tRNA synthetase [Clavibacter michiganensis subsp. sepedonicus] Length = 885 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 304/865 (35%), Positives = 460/865 (53%), Gaps = 61/865 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR +L +F GH ++PS+SL+ +DPTL+FT +GMVPF TG + T Sbjct: 2 QTADIRNAWLTYFGDRGHTVVPSASLV-SDDPTLLFTVAGMVPFVPYLTGVVPAPFARAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKC+R D++ VGRT RH TFF+M GNFSFG YFKE+AI AW+LLT Sbjct: 61 SVQKCIRT----LDIEEVGRTPRHGTFFQMNGNFSFGDYFKEQAIAYAWELLTTSEADGG 116 Query: 118 --FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 F D L++TVY ED+EA + WK+I+GL ++I + + N+W + GP GPCSEI Sbjct: 117 LGFSPDD--LWVTVYHEDDEARQAWKRIAGLPDERIQGLGRDTNYWHTGQPGPAGPCSEI 174 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMG 229 FFD+G G G + + +RY+EIWNLVFMQ+ + K + IL P +IDTGMG Sbjct: 175 FFDRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGAGTGKSDFEILGDLPTRNIDTGMG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIA 287 LER+A + Q N Y+ D + ++ + +++G +Y + + V R++ DH+RSS L++ Sbjct: 234 LERVAFIKQGVENMYETDQVRPVLDRAAELSGRRYGADHEDDVRMRIVADHVRSSVMLMS 293 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P+NEGRGY+LRR+MRR + RL+G L PA M +AYPE+ I Sbjct: 294 DGVRPSNEGRGYILRRLMRRTVRAMRLMGVDAATFGELFPASRDAMKAAYPEVSDDFDRI 353 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+E F +TL G +LD + E + GD AF L+DT G P+D+ ++ Sbjct: 354 SRLAYAEEETFLRTLSGGTTILDVAVGETKAKGGERIAGDTAFLLHDTFGFPIDLTLEMA 413 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D +F++ + EQR+RA+A + + + +S G T+F GYD L Sbjct: 414 EENGLT-VDREAFDRLMLEQRTRAKADAKSKKTALADLTVYSEFRAAGETRFTGYDELE- 471 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + ++ G V+ AV+G EV+ +T YAE+G Sbjct: 472 ----------------------TGTTILGLIVGGHSVDHAVAGDIAEVILPETSLYAESG 509 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ D G +G G L++ DVQK +G+ H V G + + +D RR + Sbjct: 510 GQEADAGSIVGQGFDLEVLDVQKPVKGLISHRVQVRSGEVGVGDAATTIVDADWRRGATQ 569 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS THL+H AL +LG Q+GS +R D ++ ++ A IED N + Sbjct: 570 AHSGTHLVHAALRQVLGQDAHQSGSYNRAGYMRLDFAWNQALSPATRSEIEDIANGAVRD 629 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +L VVTR+M ++A GA AL G KY D VRVV + GG S LC GTHVSS+ +I Sbjct: 630 DLQVVTRVMPIDEAKQLGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVSSSAQI 685 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L+ +V ESS+ + RRIE++ G+ A L + + L S LK + + R+ ++ + Sbjct: 686 GLINVVGESSVGSTNRRIESLVGREAFQDLAVERAIVSQLTSSLKTPREQLPDRIADLLQ 745 Query: 766 EY----RKLQLIHAKRKLQLNVEDLSCH--KIADVNFMSHIISEVDSK-ELKSVMDALQK 818 R++ A+ LQ V L ++ V + + V S E++ ++ +++ Sbjct: 746 NLKTAERRIADFEAQ-ALQQRVPTLLAQGSRVGSVTLIQESLGSVRSADEVRQLVTLVRE 804 Query: 819 KIQSGIIMLVGISKEKKASVLIVVT 843 + S +++ +IV T Sbjct: 805 RAGSDPVVVALAGDAGGKPTVIVAT 829 >gi|83814294|ref|YP_445665.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855] gi|123528738|sp|Q2S2B6|SYA_SALRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83755688|gb|ABC43801.1| alanyl-tRNA synthetase [Salinibacter ruber DSM 13855] Length = 966 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 339/990 (34%), Positives = 509/990 (51%), Gaps = 149/990 (15%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR FL+FFQ GHE++PS+SL+P D TL+FTN+GM FK++F G ++P +AV T Q Sbjct: 23 IRQDFLQFFQAKGHEVVPSASLVPDGDGTLLFTNAGMNQFKDVFLGTGQRPYSRAVDT-Q 81 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R GKHNDL+ VG HHTFFEMLGN+SFG YFK AI+ AW+LL + + L RL Sbjct: 82 KCLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKAEAIRWAWELLVERWGLAPDRL 141 Query: 126 YITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 Y TV++ D+ EA+ LW + L ++++ + +NFW M +TGPCGPCSE+ Sbjct: 142 YATVHEGDDDFGLSADAEAYDLWLSETPLPEERVLYEPSKENFWMMGDTGPCGPCSELHV 201 Query: 178 D----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 D + G + + + +E+WNLVF+Q+ Q L +DTGMG ERM Sbjct: 202 DLRPPEARQETPGRELVNVDHPQVMELWNLVFIQYNAQTDGSLEPLDDQHVDTGMGFERM 261 Query: 234 ATVLQEKTNNYDIDLFKHLIQA------SEQVTGMKYEGNNIVNH----------RVIVD 277 VLQ K + YD DLF L+QA E++ G Y+ +I + RV+ D Sbjct: 262 VAVLQGKESTYDTDLFAPLLQAMADRSPREEIRG--YDDLHIEDDDEHEQVRIALRVVAD 319 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H+R+ +F I+DG++P+NEGRGYV+RRI+RRA+ Y + L EP + L+ L +MG Sbjct: 320 HIRAIAFAISDGVMPSNEGRGYVIRRILRRAVRYGYQTLELEEPFLHRLVDPLIEKMGGP 379 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-------------------- 376 + L + + IE+ +RSE+E F +TL G+ + V+ H+ Sbjct: 380 FDGLAEQQEFIEQAIRSEEESFLETLGTGIEFFERVVPHVTGFQDTDGEESDRLLGALRE 439 Query: 377 ----------------GKDEILN------------GDVAFKLYDTHGLPLDIMQDILCAR 408 +++IL+ G +AF L+DT+G P+D+ + + R Sbjct: 440 DAQAMDLLEKAYVDTDDENDILHSFARTARGGTLPGQIAFLLHDTYGFPIDLTRLMARER 499 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 L +D+ + ++ Q+ RARA S + + W S+ A+ F+GYD Sbjct: 500 DL-DVDMEGYETLMDRQQERARAASDFAVDQSDVQAWQSVSPGE-ASVFVGYD------- 550 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI----VEEAVSGQKVEVVFDQTPFYAEA 524 +A+V E+ V E Q+ EV +TPFYAEA Sbjct: 551 ------------------------RAVVPDAEVRAVRVVETGDTQQYEVELSRTPFYAEA 586 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GDTG +Q+ D Q++ E I H V+ + + +D + R + Sbjct: 587 GGQVGDTGTLRFGDESVQVLDTQREGERI-AH--TVDTLPEPLDGPVEAAVDAERRNHIR 643 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 +H+ATHL+H L LG HV Q GS + PD LRFD +H + L+ IE VN I Sbjct: 644 AHHTATHLMHAVLRETLGDHVQQKGSLVAPDRLRFDFSHFDAVDEDTLRHIERRVNTAIQ 703 Query: 645 QNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 QN+P R + ++A+ GA AL +Y DRVRV++ + + S LCGGTHV +TG Sbjct: 704 QNIPKQEARDVPIDEALDRGATALFDEQYGDRVRVITFDPD----FSMELCGGTHVDATG 759 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 EI L +SE S+ +G+RR+EA+ G+ A H+ + E L + ++ + E+ Sbjct: 760 EIGLFRFLSEGSVASGVRRVEAVAGKAALEHVESELETLTRARRQFRSLHTSLPEAIAEV 819 Query: 764 WEEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 EE +L QL + QL+ A V+ ++ + +D ++ MD LQ+ Sbjct: 820 QEERDRLAGEVDQLRRGQLSDQLDT--FIAENAASVDGITVVTGRLD----RASMDDLQE 873 Query: 819 -------KIQSGIIMLVGISKE--KKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGG 867 K+ G + ++G E +KA V+ V +DL+D A DL L GGG Sbjct: 874 LGQQFRDKLGEGAVGVLGSVGEDGEKAYVVATVADDLVDDGALRAGDLVGTLGDRL-GGG 932 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GGGRP +A +GG + D + GV + ++ Sbjct: 933 GGGRPSLASAGGRDPEALDTVLDGVPALVR 962 >gi|320528371|ref|ZP_08029533.1| alanyl-tRNA synthetase [Solobacterium moorei F0204] gi|320131285|gb|EFW23853.1| alanyl-tRNA synthetase [Solobacterium moorei F0204] Length = 900 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 335/916 (36%), Positives = 489/916 (53%), Gaps = 72/916 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + +R FL+FF G + P +SLIP NDPTL++ N+G+ K F G EKP + Sbjct: 31 NEVRQKFLDFFASKGCMIEPGASLIPHNDPTLLWINAGVSALKKYFDGSEKPASNRICNA 90 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQ 122 QK +R ND++NVGRT RHHTFFEMLGNFS G YFK+ AI AW+ LT D Sbjct: 91 QKSIRT----NDIENVGRTARHHTFFEMLGNFSIGDYFKKEAITWAWEFLTSPEWIGFDP 146 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +RLY+TVY +D+EA+ W ++ G+ I R T DNFW + GP GP +E+++D+GE Sbjct: 147 KRLYVTVYPDDDEAYNQWVQV-GMIPSHIRR--TEDNFWEIGR-GPGGPDTELYYDRGEK 202 Query: 183 I-PGG----LPGSSEEGERYIEIWNLVFMQFE----QQNKQERFILPKMSIDTGMGLERM 233 P G L E +RYIE+WN+VF Q++ + ++ E LP+ +IDTGMGLER+ Sbjct: 203 YDPEGIGEKLFFEDLENDRYIEVWNIVFSQYDCRPGEVDRHEYKELPQKNIDTGMGLERL 262 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNIVNHRVIVDHLRSSSFLIADGILP 292 ++Q+ N+D DLF +I A+E+ Y E + +RVI DH+R+ +F IADG + Sbjct: 263 VCLIQDGETNFDTDLFLPIIHATEKYAKHSYSEKEYKMAYRVIADHIRTVTFAIADGAMF 322 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NEGRGYVLRR++RRA+ Y LG M L+ + M S YP L + LIE+ ++ Sbjct: 323 SNEGRGYVLRRVLRRAVRYGIKLGIDGAFMYKLVKVVADIMISYYPYLQEKISLIEKLVK 382 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+E F KTL G LL L+ +IL G+V FKLYDT+G P ++ +I G Sbjct: 383 QEEESFHKTLANGEALLQNALAEHADTKILPGEVMFKLYDTYGYPKELTTEIAEEEGYR- 441 Query: 413 IDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKYGATQFIGYDLL--RGSKF 468 +D F++ ++ Q++RAR + S G + + +E ++F GY RG Sbjct: 442 VDSEGFDKEMQAQKTRAREARGNIQSMHGQSADLMDFTQE----SKFTGYTDTHSRG--- 494 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 KV+ +GV V + +G+I + D+T FYAE+GGQ Sbjct: 495 -----KVIGL-----FKDGVR--VDTLTDEGDI------------ILDETCFYAESGGQC 530 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 DTG D + +T+VQK +HH + G + L DY+ R++ NHS Sbjct: 531 ADTGVVWNDHFKANVTNVQKAPHKQPLHHIAIVEGTVSEGNVLEGEYDYEKRQRTRANHS 590 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 + HLL AL +LG H++Q GS + RFD TH + T +L +E VN IA P Sbjct: 591 SLHLLQAALKKVLGDHIAQAGSYNCAEYGRFDFTHFEKPTEEQLNEVERLVNKQIALAQP 650 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 +VT +M E A SGA AL KY D VRVVS+ G S CGGTH ++T ++ + Sbjct: 651 IVTEVMAVEAAKNSGAIALFDEKYGDTVRVVSM-----GDFSKEFCGGTHANNTADLCVF 705 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS--QG---NVVGRVEEI 763 I SE SI +GIRRI + T A +++ L A +K+ QG +V EE Sbjct: 706 KITSEESIGSGIRRITSETKFDAYKDFKDEEQYLLECAKLMKLQSWQGFKEKLVALQEEN 765 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKKI 820 + RK H + +L L+ D + K +N +S ++ + D+ LK+ + ++ K+ Sbjct: 766 -AQLRKDNDAHKQAEL-LSSADTAVQKAETINGLSCVLLSLDGFDTNSLKTYAENVRNKL 823 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 G + + + K V + A D+ + +A+ L GG GGGRP MAQ+GG Sbjct: 824 VDGFVFVSNTTDGKVTFVCASSKTAIAKGKKAGDIVKAAAQ-LTGGNGGGRPDMAQAGGK 882 Query: 881 NGNKADQAIAGVASFL 896 + +K +A + V L Sbjct: 883 DTSKVQEAHSLVREIL 898 >gi|189501991|ref|YP_001957708.1| alanyl-tRNA synthetase [Candidatus Amoebophilus asiaticus 5a2] gi|189497432|gb|ACE05979.1| hypothetical protein Aasi_0578 [Candidatus Amoebophilus asiaticus 5a2] Length = 879 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 329/926 (35%), Positives = 501/926 (54%), Gaps = 86/926 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S+IR F++FF++ H + ++ ++ DPTL+FTN+GM FK+ F Q++ YQ + Sbjct: 5 SNIRQKFVDFFKQKDHHHVKAAPIVNKEDPTLLFTNAGMNQFKDFFLNQQEAPYQRAIST 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q C+R GKHNDL+ VG HHT FEMLGN+SFG YFKE AI AW+LLT+ + L Q R Sbjct: 65 QPCLRVSGKHNDLEEVGVDTYHHTMFEMLGNWSFGEYFKEEAIACAWELLTEVYKLPQER 124 Query: 125 LYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 LY+TV+ DE D+E+ W+K +S D+I+ DNFW M +TGPCGPCSEI Sbjct: 125 LYVTVFQGDEEESLELDQESLNTWEKY--ISRDRILYGNKKDNFWEMGDTGPCGPCSEIH 182 Query: 177 FD-----------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 D E + G P + IEIWNLVF+Q+ + + LP +D Sbjct: 183 VDIRTEEEIQQQAGKELVNTGHP-------QVIEIWNLVFIQYNRLASGQLMELPAKHVD 235 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSS 283 TGMG ER+ VLQ K++ YD D+F LI +++ Y +N V+ RV+ DH+R+ + Sbjct: 236 TGMGFERLTMVLQGKSSTYDTDIFVPLIHNIMRLSHKTYGKDNKVDIAMRVVADHIRAIT 295 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPELIQ 342 F IADG LP+N GYV+RRI+RRA+ Y LG+ P M L+ L + + YP++ Q Sbjct: 296 FAIADGQLPSNTQAGYVVRRILRRAVRYGYTNLGFETPFMYQLVSILAQQFKNVYPQIKQ 355 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDI 400 + IE+ ++SE+E F KTL GL L+ + L + ++++G AF+LYDT+G P D+ Sbjct: 356 QQSYIEQVIKSEEESFFKTLAVGLHRLEHISETLNINGQQVIDGPTAFELYDTYGFPPDL 415 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + I +GL +D F +AL+ QR R++ ++ L G W + + + FIGY Sbjct: 416 TRLIAQEKGLE-VDEEGFQKALQNQRIRSQQAAV-LEQGD----WHIVVKDVDSV-FIGY 468 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 D L +L V ++I Q+GE + ++V DQTPF Sbjct: 469 DQL-------------------ELIAKVIQ-YRSIYQKGEEI--------YQIVLDQTPF 500 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 Y E GGQ+GDTG I + + D +K+ E I + + + T ++V D + R Sbjct: 501 YPEGGGQVGDTGTLIVGEQIIAVFDTKKEYERIIHYTHELPHDLHATVQAVV---DVKKR 557 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 ++ NHSATHLLH AL +LGSH+ Q GS + LRFD H ++ +++ IE VN Sbjct: 558 NLIASNHSATHLLHAALRQVLGSHIEQKGSLVNEKLLRFDFPHYTKVSPEQIREIEHIVN 617 Query: 641 DIIAQNLPV-VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I N+ + R M EDA + G AL G KY + VRV++ + S LCGGTH Sbjct: 618 QKIRANINLHEVRSMLLEDAKSMGVTALFGEKYGEYVRVITFD----PYFSKELCGGTHA 673 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 S+TG++ I +E+ I AG RRIEAIT A + ++ Q L LK ++V Sbjct: 674 SATGKLGFFKITAETGIAAGTRRIEAITADAAENFIIEQLSILNQATEALK-KPNDLVKS 732 Query: 760 VEEIWEEYRKLQ---LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMD-A 815 + + EE L+ L + ++++ +++L H I V + +I EV ++++ A Sbjct: 733 IYHLLEEKANLEKKILSYQAQEVRSVIDNLYQH-IKQVQEIQVLIEEVKVPNVEALKQVA 791 Query: 816 LQKKIQSGIIMLVGIS-KEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGGGGRP 872 L + G L S +++ + + ++E+L+ + NA + + A ++ GGGGG+P Sbjct: 792 LSFRTNKGPFFLTLTSIIDQQPHIALFISEELIHKTQMNANIIIKELATLI-QGGGGGQP 850 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 A + G + + +Q + L+K Sbjct: 851 FFATAKGNDASGINQVLVTARHILEK 876 >gi|303277145|ref|XP_003057866.1| predicted protein [Micromonas pusilla CCMP1545] gi|313471752|sp|C1MR42|SYAP_MICPC RecName: Full=Probable alanyl-tRNA synthetase, chloroplastic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|226460523|gb|EEH57817.1| predicted protein [Micromonas pusilla CCMP1545] Length = 899 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 308/785 (39%), Positives = 434/785 (55%), Gaps = 54/785 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FLEF++ H LPSSSL+P DPT++ T +GM+ FK +F GQE+ TT Sbjct: 12 AGIRRRFLEFYEARDHARLPSSSLVP-EDPTVLLTIAGMLQFKPVFMGQEERKVPTATTT 70 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR ND++NVG T RHHTFFEMLGNFSFG YFK+ AI AW++ TKE+ LD R Sbjct: 71 QKCVRT----NDIENVGVTARHHTFFEMLGNFSFGDYFKKEAIAWAWEISTKEYGLDASR 126 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 ++I+V+ ED+EA+ +W+ G+ ++I R+ DNFW+ TGPCGPCSE+++D Sbjct: 127 IWISVFREDDEAYAIWRDEIGIPENRIKRMDEADNFWAAGPTGPCGPCSELYWDFHP--E 184 Query: 185 GGLPGSS--EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G+ GS ++ R+IE +NLVFM+ + L + +IDTGMGLERMA +LQ K N Sbjct: 185 RGVDGSEDLDDDSRFIEFYNLVFMESVRDTDGNMKPLKRKNIDTGMGLERMAQILQGKPN 244 Query: 243 NYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGY 299 NY+ DL + +I A+ + G+ Y+ + +VI DH R+ +LI+DG+LP+N GRGY Sbjct: 245 NYETDLIRPIIDAAASMAGISYDDADDATKLKLKVIGDHTRAVCYLISDGVLPSNVGRGY 304 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL-----IEETLRSE 354 ++RR++RR + RLLG P + E A +L I + L E Sbjct: 305 IVRRLLRRVVRCGRLLGVKAPDGAGAFTPAIARVAIGLSEACDANVLKSSQKICDELERE 364 Query: 355 DERFGKTLDRGLVLLDGVLSHLGKDEI----LNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + RF TL RG +L +L+ + L G+ AF LYDT+G PLDI D+ G+ Sbjct: 365 ELRFATTLGRGEEILADMLAAAKTKDANAPKLTGEDAFTLYDTYGFPLDITTDVATEAGV 424 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSKFM 469 +D+ F +A+ R +R + + T + ++ ++ G T+F GY Sbjct: 425 -DVDVDGFEKAMAAARDLSRDARVAVDV-TVGDLLGAIADELGEPTRFTGY-----GSVT 477 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 +E K V+A+++ GE V A +G VEVV D TPFYAE GGQ+G Sbjct: 478 EEGVK-----------------VRALLKGGERVASAGAGDTVEVVLDATPFYAEGGGQVG 520 Query: 530 DTGCAI--GDGIRLQITDVQKKAEG-IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN 586 D G I D +L + D +K A G +FVH +V G++ ++ T+ +RR+ N Sbjct: 521 DEGEIILSDDRGKLVVGDCRKAAGGRLFVHSCVVSEGVVGEGDAVTATVSAASRRRAKAN 580 Query: 587 HSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 H+ATHLL AL +G VSQ GS + + LRFD T EL +E VN I Sbjct: 581 HTATHLLQSALKMTIGEDVSQAGSLVNFERLRFDFNAPSAPTPEELARVESLVNGWIGDA 640 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 + + M A GA A+ G KY D VRVV V S LCGGTHV +T EI Sbjct: 641 IDLTAEEMAISRAKEKGATAMFGEKYGDVVRVVDVP-----GVSMELCGGTHVKNTAEIG 695 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 I+SES I AG+RRIEA++G L +D +K+LA L+V + GRV + E+ Sbjct: 696 GFKILSESGIAAGVRRIEAVSGPGVVDLLQERDGTVKALAGSLRVPPEEIAGRVSALMED 755 Query: 767 YRKLQ 771 + Q Sbjct: 756 LKTSQ 760 >gi|260903835|ref|ZP_05912157.1| alanyl-tRNA synthetase [Brevibacterium linens BL2] Length = 884 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 334/924 (36%), Positives = 504/924 (54%), Gaps = 74/924 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I+ +L++F+ NGH ++PS+S+I +DP+++F +GMV F TG+E + T+V Sbjct: 4 AEIKQRWLDYFEANGHAVVPSASVI-SSDPSILFNIAGMVQFIPYLTGREPAPFNRATSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR G D++ VG+T RH TFF+M GNFSFG YFK AI+ AW LLT D Sbjct: 63 QKCVRTG----DIEEVGKTTRHGTFFQMNGNFSFGDYFKREAIRFAWGLLTNSVDDGGLG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D+ L+ TV+++D E LW + + + ++I DNFW + GP G CSEI+FD+ Sbjct: 119 FDKNLLWATVHEDDLETIDLWLEETSIPRERIQPRDNEDNFWHTGQPGPGGYCSEIYFDR 178 Query: 180 GE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI------LPKMSIDTGMGLE 231 G + GG P + E+ RYIEIWNLVFM+FE + + LP +IDTGMGLE Sbjct: 179 GPDYGVEGG-PVADED--RYIEIWNLVFMEFELSEVRSKVDFDIAGELPAKNIDTGMGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADG 289 R+A +LQ N Y+ID +I+A+ +++G +Y ++ V RV+ DH+RSS +I DG Sbjct: 236 RVAFLLQGVENMYEIDEVFPVIEAASRLSGHRYGADHDADVQMRVVADHVRSSLIIIGDG 295 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P NEGRGY+LRR++RRA+ RLLG T ++ LLP M +YPEL I Sbjct: 296 VRPGNEGRGYILRRLLRRAVRAMRLLGVTSEVLPELLPVSMESMKLSYPELETDFDRISR 355 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E++ F +TL+ G L + L D+ L+GDVAF L+DTHG P+D+ ++ + Sbjct: 356 IAYAEEKAFLRTLESGTQLFQNAAASLPASDKTLSGDVAFALHDTHGFPIDLTLEMASEQ 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSK 467 G+ +D F + EQR+RA+A + G + +S + GA++F+GYD L Sbjct: 416 GV-NVDEEGFRALMSEQRTRAKADAKAKKGGGHADLSAYSALLEDGASEFVGYDRLE--- 471 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 S V+ IV G E GQ +++ D TPFYAEAGGQ Sbjct: 472 --------------------ADSRVRGIVVDGLAQEVLTPGQTADLILDLTPFYAEAGGQ 511 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G G G ++ DVQ +G+ H V G + ++ +D+ +R Q S H Sbjct: 512 RADIGLIKGHGFTARVLDVQNPIKGLPAHRVEVIDGEIHVGAEVLAVVDHDHRFQGSQAH 571 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 +ATHL+H AL ILG+H Q GS P +RFD + + + IED N + N Sbjct: 572 TATHLVHAALREILGTHAVQAGSMNQPGYMRFDYSFPEAPSQQMRAEIEDVANLAVRSNY 631 Query: 648 PVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 V T + EDA SGA AL G KY + VRVV + GG S LCGGTHV S+ E+ Sbjct: 632 EVGTEFLPFEDARKSGAMALFGEKYPNIVRVVDI----GGPFSRELCGGTHVGSSSEVGP 687 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ-------GNVVGRV 760 + ++SE+S+ +G+RRIEA G A L + + SL+ LKV G+++ ++ Sbjct: 688 ISVLSEASVGSGVRRIEAAVGMDAFRSLAAERSIVSSLSDMLKVPGTDVKERVGDLMSKL 747 Query: 761 EEIWEEYRKL---QLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDA 815 ++ +E +L QL+ + K N E + + +AD+ ++ ++ ++++V+ Sbjct: 748 KDAEKEIARLNSQQLLASAGKFLDNAETVGSTLFVVADLGDVT------NAGDIRTVVTD 801 Query: 816 LQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 L+ ++ +S +++ +G K V+ + A L L+ L GGGGGG+P Sbjct: 802 LRGRVNERSAVVLGIGTGNSKPVVVIATTAAAREEGHQAGKLVSLACGEL-GGGGGGKPD 860 Query: 874 MAQSGGPNGNKADQAIAGVASFLK 897 +AQ GG + + AIA V + L+ Sbjct: 861 LAQGGGSDVSAIPSAIAAVKAALQ 884 >gi|254775877|ref|ZP_05217393.1| alanyl-tRNA synthetase [Mycobacterium avium subsp. avium ATCC 25291] Length = 900 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 332/920 (36%), Positives = 493/920 (53%), Gaps = 66/920 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F G P Y T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT + LD Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTGSVEQGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R++ TVY +D+EA +LW++I+GL A++I R DN+WSM GPCGP SEI++D+GE Sbjct: 121 PERIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIYYDRGE 180 Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMA 234 GG P ++E+ RY+E+WNLVFMQ E+ + LP+ +IDTGMG+ER+A Sbjct: 181 KFGVGGGPIANED--RYVELWNLVFMQSERGEGTSKTDFEILGPLPRKNIDTGMGVERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291 VLQ N Y+ DL + +I A Y+ N V +R+I DH R+++ LI DG+ Sbjct: 239 FVLQGVHNVYETDLLRPVIDAVAARAPRPYDAGNHDDDVRYRIIADHSRTAAILIGDGVT 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + ARLL P++ L+ + MG +YPEL+ I Sbjct: 299 PGNDGRGYVLRRLLRRVIRSARLLDIEGPIVGDLMATVRDAMGPSYPELVTDFDRIARIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L D V S + ++G AF L+DT+G P+++ ++ G Sbjct: 359 VAEETAFNRTLAAGSKLFDEVASTTKATGAKSISGSDAFTLHDTYGFPIELTLEMASEAG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D + F + + EQR RA+A + + + G T+F G+D L Sbjct: 419 LQ-VDEVGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDEL------ 471 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + ++L +G V + G+ +VE+V D+TP YAE+GGQ+ Sbjct: 472 SSEARILGI-----FVDG--KRVPVVTHGGD------GADRVELVLDRTPLYAESGGQIA 518 Query: 530 D----TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D +G G+ R +TDVQK A+ ++VH VE G +++ +D Q RR + Sbjct: 519 DEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPQWRRGATQ 578 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG + Q GS P LRFD P+T + IE+ N + Sbjct: 579 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRTQIEEVTNQAVQA 638 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T E A A GA AL G Y ++VRVV + GG S LCGGTHV ++ +I Sbjct: 639 DFEVHTFTEQLEKAKAMGAIALFGESYPEQVRVVEI----GGPFSLELCGGTHVHNSAQI 694 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V RV + E Sbjct: 695 GPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 754 Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819 R + + +L +I +V ++ +S + + +L+S++ ++ K Sbjct: 755 RLRAAEKELERMRLASARAAAGNAAAGAERIGNVRVVAQRMSGGMTAADLRSLVGDIRGK 814 Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + S ++ I++ + SV V +DL R N + + +L+A V G GGG+ + Sbjct: 815 LGSDPAVVALIAEGEGGSVPYAVAANPAAQDLGIRANDL-VKQLAAPV--DGRGGGKADL 871 Query: 875 AQSGGPNGNKADQAIAGVAS 894 AQ G + D A+ V S Sbjct: 872 AQGSGKDPAGIDAALDAVRS 891 >gi|154508867|ref|ZP_02044509.1| hypothetical protein ACTODO_01378 [Actinomyces odontolyticus ATCC 17982] gi|153798501|gb|EDN80921.1| hypothetical protein ACTODO_01378 [Actinomyces odontolyticus ATCC 17982] Length = 902 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 304/878 (34%), Positives = 476/878 (54%), Gaps = 70/878 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IRT +L++F+K GHE+ PS SL+ +P+++FT +GMVPF TG E + + Sbjct: 3 TSEIRTRWLDYFEKQGHEIRPSVSLV-SPEPSILFTIAGMVPFIPYITGVEPAPWPRAAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 VQKC+R ND+DNVG+T RH TFF+M GNFSFG YFKE AI AW+LLT D Sbjct: 62 VQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAINYAWELLTGSRDEGKY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD R ++T++D+D+EAF + K G+ I+R+ +NFW + GP GPC+E +D Sbjct: 118 GLDGDRFWVTLWDQDDEAFGVLTKQIGMDPKHIVRLPREENFWDTGQPGPAGPCAEWHYD 177 Query: 179 QG-ECIPGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLE 231 +G E P + G+ + G +RY+E+WNLVF Q+ E K + L K +IDTG GLE Sbjct: 178 RGPEYGPEAVGGTVDPGGDRYLEVWNLVFDQYMRGEGSGKDYPLLGELDKKAIDTGAGLE 237 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-----------NNIVNHRVIVDHLR 280 R+A V+Q+K N Y+ID +I+A+ Q++G +Y ++ V RV+ DH+R Sbjct: 238 RLAFVMQDKPNMYEIDEVFPVIEAAMQMSGKRYGLGAAGPEAGAAYDDDVRMRVVADHVR 297 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 SS LI DG+ P N+GRGYVLRR++RRA+ RLLG E M LL A M ++YPEL Sbjct: 298 SSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEATMPTLLTASKDAMKASYPEL 357 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLP 397 I E +E++ F +TL G +LD ++ + + +++G AF L+DT+G P Sbjct: 358 EINWKTISEVAYAEEDAFRRTLSAGTTILDAAVATAKESKGAPVISGASAFSLHDTYGFP 417 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GAT 455 +D+ ++ +G++ +D F + EQ+ RARA + +G T+ F EK G + Sbjct: 418 IDLTLEMAAEQGVS-VDEEGFRTLMAEQKERARADARSKKTGHTDVRVFHDIEKAMGGGS 476 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 F+GY + V+A++ G A + +VEV+ Sbjct: 477 TFLGY-----------------------TEQAAEATVEALLVDGVAAPAASAPAEVEVIL 513 Query: 516 DQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+TPFYAE GGQL D G + G +++ DVQ G+ VH + G + Sbjct: 514 DRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGGMTVGEKAYAE 573 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R ++ H+ATH+++ L ++ ++Q GS +P LRFD H + ++L Sbjct: 574 IDGERRLAIARAHTATHMVYAGLRNVVSEDLTQAGSENSPSRLRFDFRHGSALEGSQLSD 633 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE VN+ +A++L V T +M+ + A +GA AL G KY VRVV++ G LC Sbjct: 634 IEALVNEKLAEDLAVTTEVMSIDAAREAGAIALFGEKYGSEVRVVTI----GDGFDRELC 689 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754 GGTHV +TG I + ++SE S+ +G+RRI+A+ G A + + L+ + Sbjct: 690 GGTHVPATGHIGRITVLSEGSVGSGVRRIDALVGDGAYEFQAKEHALVNQLSQLVGGRAD 749 Query: 755 NVVGRVE----EIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKE- 808 + R+E ++ E ++L+ I + L + S I V ++ + E+ S + Sbjct: 750 ELPERIESLLAKLRESEKELEKIRTAQALSQGADLAASAKAIGPVTVVASAVGEMPSADA 809 Query: 809 LKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTE 844 L+++ ++ ++ G ++ +G K S+++ E Sbjct: 810 LRTLALDVRDRLGNDRGTVVALGGVIGGKPSLVVATNE 847 >gi|41407175|ref|NP_960011.1| alanyl-tRNA synthetase [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466707|ref|YP_882613.1| alanyl-tRNA synthetase [Mycobacterium avium 104] gi|48428510|sp|P61705|SYA_MYCPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830149|sp|A0QI75|SYA_MYCA1 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|41395526|gb|AAS03394.1| AlaS [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167994|gb|ABK68891.1| alanyl-tRNA synthetase [Mycobacterium avium 104] Length = 900 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 332/920 (36%), Positives = 493/920 (53%), Gaps = 66/920 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F G P Y T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT + LD Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTGSVEQGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R++ TVY +D+EA +LW++I+GL A++I R DN+WSM GPCGP SEI++D+GE Sbjct: 121 PERIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIYYDRGE 180 Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERF------ILPKMSIDTGMGLERMA 234 GG P ++E+ RY+E+WNLVFMQ E+ + LP+ +IDTGMG+ER+A Sbjct: 181 EFGVGGGPIANED--RYVELWNLVFMQSERGEGTSKTDFEILGPLPRKNIDTGMGVERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291 VLQ N Y+ DL + +I A Y+ N V +R+I DH R+++ LI DG+ Sbjct: 239 FVLQGVHNVYETDLLRPVIDAVAARAPRPYDAGNHDDDVRYRIIADHSRTAAILIGDGVT 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + ARLL P++ L+ + MG +YPEL+ I Sbjct: 299 PGNDGRGYVLRRLLRRVIRSARLLDIEGPIVGDLMATVRDAMGPSYPELVTDFDRIARIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L D V S + ++G AF L+DT+G P+++ ++ G Sbjct: 359 VAEETAFNRTLAAGSKLFDEVASTTKATGAKSISGSDAFTLHDTYGFPIELTLEMASEAG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D + F + + EQR RA+A + + + G T+F G+D L Sbjct: 419 LQ-VDEVGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDEL------ 471 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + ++L +G V + G+ +VE+V D+TP YAE+GGQ+ Sbjct: 472 SSEARILGI-----FVDG--KRVPVVTHGGD------GADRVELVLDRTPLYAESGGQIA 518 Query: 530 D----TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D +G G+ R +TDVQK A+ ++VH VE G +++ +D Q RR + Sbjct: 519 DEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPQWRRGATQ 578 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG + Q GS P LRFD P+T + IE+ N + Sbjct: 579 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRTQIEEVTNQAVQA 638 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T E A A GA AL G Y ++VRVV + GG S LCGGTHV ++ +I Sbjct: 639 DFEVHTFTEQLEKAKAMGAIALFGESYPEQVRVVEI----GGPFSLELCGGTHVHNSAQI 694 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V RV + E Sbjct: 695 GPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 754 Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819 R + + +L +I +V ++ +S + + +L+S++ ++ K Sbjct: 755 RLRAAEKELERMRLASARAAAGNAAAGAERIGNVRVVAQRMSGGMTAADLRSLVGDIRGK 814 Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + S ++ I++ + SV V +DL R N + + +L+A V G GGG+ + Sbjct: 815 LGSDPAVVALIAEGEGGSVPYAVAANPAAQDLGIRANDL-VKQLAAPV--DGRGGGKADL 871 Query: 875 AQSGGPNGNKADQAIAGVAS 894 AQ G + D A+ V S Sbjct: 872 AQGSGKDPAGIDAALDAVRS 891 >gi|322694715|gb|EFY86537.1| alanyl-tRNA synthetase [Metarhizium acridum CQMa 102] Length = 952 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 332/968 (34%), Positives = 500/968 (51%), Gaps = 104/968 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPV--YQAV 61 +R F ++ ++ GH ++PS S++P +DPTL+FTN+GM FK IF G Q P+ + Sbjct: 11 VREAFFDYMRQRGHTIVPSGSVVPYDDPTLLFTNAGMNQFKPIFLGTINQSDPMANLKRA 70 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QK +RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI++AW++LTK + LD Sbjct: 71 ADTQKVIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMAWEILTKVYGLD 130 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 +RLY T ++ D+EA +LW I G+ D+I+ DNFW M + GPCGP S Sbjct: 131 PKRLYATYFEGNKELGLPPDDEAKQLWLDI-GMPEDQIVPGDMKDNFWEMGDQGPCGPSS 189 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVFMQF++Q LP IDTGMG Sbjct: 190 EIHYDK----IGGRNAAHIVNKDDPMVVEIWNLVFMQFDRQKDGSLKPLPAKHIDTGMGF 245 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281 ERM + LQE +NY D F L + E+VTG+ KY ++ +RVI DH+R+ Sbjct: 246 ERMVSALQETDSNYATDCFTPLFKQIEEVTGVRPYSDKYGKDDADGIDTAYRVIADHIRT 305 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR--LLGYTEPLMMHLLPALCTEMGSAYPE 339 SF I DG +P ++GRGYV+RRI+RR + YAR L +LPAL + MG +PE Sbjct: 306 LSFAITDGAVPNSDGRGYVIRRILRRGVRYARKYLKAEIGSFFSKILPALVSHMGDQFPE 365 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLP 397 L++ +L I+E L E+E F +TLDRG + + K+ + L+GDV ++LYDT G P Sbjct: 366 LVKKQLDIKEILDEEEEAFARTLDRGEAQFEKYAAKAAKNGVKKLDGDVVWRLYDTFGFP 425 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ Q + RGL ID I + A E+ R ++A + + F+ + + Q Sbjct: 426 VDLTQIMAEERGLE-IDEIEVSVAREKAREASKAVKASVDT-------FAKLDVHQIAQL 477 Query: 458 IGYDLLR---GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 + R +KF+K D K Q + +G S +E + ++ Sbjct: 478 DQQKVARTDDDAKFVKGDSKGKVQL----IFDGKSF--------HNSTKELPKNTAIGIL 525 Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+T FYAE+GGQ+ DTG I D + ++ DVQ G +H +E G L + ++ Sbjct: 526 LDKTNFYAESGGQVADTGRIVIDDVVEFKVMDVQNYG-GFILHSGYIEYGALSSGDEVIC 584 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+H+L +LG ++Q GS + + LRFD +H + EL+ Sbjct: 585 EYDELRRSPIRNNHTGTHVLNHSLREVLGDDINQKGSLVDNEKLRFDFSHKSQVKIEELR 644 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----------- 681 IE N+ I +N + ++ ++ + A G A+ G Y + VRVVS+ Sbjct: 645 KIETLSNEYIRRNSKIFSKDVDLDLARQIEGVRAVFGETYPNPVRVVSIGMDVDTMLKDP 704 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSHL 735 + ++ +S CGGTHV TG I L +V ES I GIRRI A TG QR + Sbjct: 705 KKQEWRQYSVEFCGGTHVEQTGLIKDLILVEESGIAKGIRRIIAYTGDAAHQVQREAAEF 764 Query: 736 MGQDEKLKSLA-SFLKVSQGNVVGR----------------------VEEIWEEYRKLQL 772 + + L+++ K +Q V+ + + E +K Q Sbjct: 765 SKKLDVLEAMPFGPAKDAQTKVISQELSQLVISTLAKDELNTRFQKIATSVVAEQKKRQK 824 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 A + V+ K AD F+ + ++K L V Q K ++ + + G S+ Sbjct: 825 AEAGAAVGCVVKHFEEKKEADY-FVGRLPISANAKALTEVFKHFQAKDKTKSVYVFGGSQ 883 Query: 833 EKKASVL-IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E+ A V + V L + A A + + V+GG GG P Q G K D A+ Sbjct: 884 EEGAVVHGVYVGSGLASKGVTAEQWASVVSDVVGGRSGGKEP-TRQGQGTKPEKIDDAVE 942 Query: 891 GVASFLKK 898 +L++ Sbjct: 943 AARKWLEE 950 >gi|326904170|gb|EGE51103.1| alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis W-148] Length = 903 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 339/920 (36%), Positives = 497/920 (54%), Gaps = 63/920 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF G YFK AI+LAW LLT + LD Sbjct: 65 CIRT----PDIDEVGITTRHNTFFRWPA-IQLGDYFKRGAIELAWALLTNSLAAGGYGLD 119 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 R++ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGP SEI++D+G Sbjct: 120 PERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 179 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMA 234 E P G P SE+ RY+E+WNLVFMQ E +++ Q LP+ +IDTGMG+ER+A Sbjct: 180 EFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIA 237 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGIL 291 VLQ+ N Y+ DL + +I +V Y+ GN + V +R+I DH R+++ LI DG+ Sbjct: 238 LVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVS 297 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + A+LLG ++ L+ + MG +YPEL+ I Sbjct: 298 PGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIA 357 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L + V S K +L+G AF L+DT+G P+++ ++ G Sbjct: 358 VAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETG 417 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D I F + + EQR RA+A + + + GAT+F G+D LR S+ Sbjct: 418 LQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQAR 475 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 V ++ P+ + +GV+ A GQ+VE+V D+TP YAE+GGQ+ Sbjct: 476 ILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESGGQIA 521 Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D G G G R +TDVQK A+ ++VH VE G +++ +D RR + Sbjct: 522 DEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQ 581 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG + Q GS P LRFD P+T + +E+ N+ + Sbjct: 582 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQA 641 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T + A A GA AL G Y D VRVV E GG S LCGGTHVS+T +I Sbjct: 642 DFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQI 697 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+ ESSI +G+RR+EA G + HL + + LAS LKV V RV + E Sbjct: 698 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVE 757 Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKK 819 R + + ++ +I +V ++ +S + + +L+S++ ++ K Sbjct: 758 RLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGK 817 Query: 820 IQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + S ++ I++ + +V V +DL R N DL + A V G GGG+ + Sbjct: 818 LGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRAN--DLVKQLA-VAVEGRGGGKADL 874 Query: 875 AQSGGPNGNKADQAIAGVAS 894 AQ G N D A+ V S Sbjct: 875 AQGSGKNPTGIDAALDAVRS 894 >gi|15827174|ref|NP_301437.1| alanyl-tRNA synthetase [Mycobacterium leprae TN] gi|221229652|ref|YP_002503068.1| alanyl-tRNA synthetase [Mycobacterium leprae Br4923] gi|20532262|sp|Q9CCT0|SYA_MYCLE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|13092722|emb|CAC30020.1| alanyl-tRNA synthetase [Mycobacterium leprae] gi|219932759|emb|CAR70605.1| alanyl-tRNA synthetase [Mycobacterium leprae Br4923] Length = 908 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 336/931 (36%), Positives = 490/931 (52%), Gaps = 87/931 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQCTPPYATATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF-----DLD 121 C+R D+D+VG T RH+TFF+M GNFSFG YFK AI+LAW LLT F LD Sbjct: 65 CIRT----PDIDDVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSFADGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 RL+ TVY +D+EA LW++I+GL ++I R DN+WSM GPCGP SEI++D+G Sbjct: 121 PERLWATVYLDDDEAAGLWQEIAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMA 234 E P G P +E+ RY+E+WNLVFMQ E +++ + R LP+ +IDTGMG+ER+A Sbjct: 181 EFGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEIRGPLPRKNIDTGMGVERIA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN-------IVNHRVIVDHLRSSSFLIA 287 VLQ N Y+IDL + +I Y+ N V +R+I DH R+++ LI Sbjct: 239 LVLQGVHNVYEIDLLRPVIDLVATRAPRPYDPENEDTNHADNVRYRIIADHSRTAAILIG 298 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + A+LLG P++ L+ +C MG AYP L+ I Sbjct: 299 DGVSPVNDGRGYVLRRLLRRIIRSAKLLGIDSPIVGDLMATVCNAMGRAYPGLVTDFDRI 358 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+ F +TL G L D V+ ++ G AF L+DT+G P+++ ++ Sbjct: 359 NRIAVAEETAFNRTLTSGSKLFDDVVGATVASGSTVVAGLDAFTLHDTYGFPIELTLEMA 418 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D F++ + +QR RA+ + + + G T+F G+D Sbjct: 419 AEAGLT-VDEKGFHELMLQQRQRAKVDAAARKQAHVDLTAYRELVDAGPTEFTGFD---- 473 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAVSGQ-----KVEVVFDQ 517 + E R + I +G+ +V AV GQ +VE+V D+ Sbjct: 474 -ELTTEAR------------------ILGIFVEGKRVPVVAHAVRGQAGITNRVELVLDR 514 Query: 518 TPFYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 TP YAE+GGQ+ D G G G R +TDVQK A+ + VH +E G ++V Sbjct: 515 TPLYAESGGQIADAGTISGIGAGASSRAAVTDVQKIAKTLHVHRVNLESGEFVEGDTVVA 574 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D RR + HS TH++H AL +LG + Q GS P LRFD +T + Sbjct: 575 VVDPGWRRGAAQGHSGTHIVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGSLTGEQRT 634 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSAL 693 IE+ N+ + + V T + A A GA AL G Y D VRVV E GG S L Sbjct: 635 QIEEVTNEAVQADFEVHTFTEKLDTAKAMGAIALFGEAYPDEVRVV----EMGGPFSLEL 690 Query: 694 CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 CGGTHV +T +I + I+ ESSI +G+RR+EA G + HL + + LAS L+V Sbjct: 691 CGGTHVHNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLQVPS 750 Query: 754 GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI-------ISEVDS 806 V RV + E + + +R Q NV+ + A ++ ++ + Sbjct: 751 EEVHARVATLVERLKAAEK-ELERARQANVQAAATKAAAGAEWIGNVRVVVQRMSGPIAP 809 Query: 807 KELKSVMDALQKKIQS--GIIMLVGISKE-KKASVLIVV-----TEDLLDRFNAVDLARL 858 +L+ ++ ++ K+ S ++ L+ ++ + A+V V +DL R N DL Sbjct: 810 DDLRFLVGDIRGKLGSDPAVVALIAVTSDGPTATVPYAVAANPAAQDLGIRAN--DLVEQ 867 Query: 859 SAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 A V+ G GGG+ +AQ G + D A+ Sbjct: 868 LAMVV-DGRGGGKADLAQGSGKDPTGIDAAL 897 >gi|293192679|ref|ZP_06609633.1| alanine--tRNA ligase [Actinomyces odontolyticus F0309] gi|292820186|gb|EFF79183.1| alanine--tRNA ligase [Actinomyces odontolyticus F0309] Length = 902 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 297/839 (35%), Positives = 457/839 (54%), Gaps = 67/839 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IRT +L++F+K GHE+ PS SL+ +P+++FT +GMVPF TG E + + Sbjct: 3 TSEIRTRWLDYFEKQGHEIRPSVSLV-SPEPSILFTIAGMVPFIPYITGVEPAPWPRAAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 VQKC+R ND+DNVG+T RH TFF+M GNFSFG YFKE AI AW+LLT D Sbjct: 62 VQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAINYAWELLTGSRDEGKY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD R ++T++D+D+EAF + K G+ I+R+ +NFW + GP GPC+E +D Sbjct: 118 GLDGDRFWVTLWDQDDEAFGVLTKQIGMDPKHIVRLPREENFWDTGQPGPAGPCAEWHYD 177 Query: 179 QG-ECIPGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLE 231 +G E P + G+ + G +RY+E+WNLVF Q+ E K + L K +IDTG GLE Sbjct: 178 RGPEYGPEAVGGTVDPGGDRYLEVWNLVFDQYMRGEGSGKDYPLLGELDKKAIDTGAGLE 237 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-----------NNIVNHRVIVDHLR 280 R+A V+Q+K N Y+ID +I+A+ Q++G +Y ++ V RV+ DH+R Sbjct: 238 RLAFVMQDKPNMYEIDEVFPVIEAAMQMSGKRYGLGAAGPEAGAAYDDDVRMRVVADHVR 297 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 SS LI DG+ P N+GRGYVLRR++RRA+ RLLG E M LL A M ++YPEL Sbjct: 298 SSLMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEATMPTLLTASKDAMKASYPEL 357 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLP 397 I E +E++ F +TL G +LD ++ + + +++G AF L+DT+G P Sbjct: 358 EINWKTISEVAYAEEDAFRRTLSAGTTILDAAVATAKESKGAPVISGASAFSLHDTYGFP 417 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GAT 455 +D+ ++ +G++ +D F + EQ+ RARA + +G T+ F EK G + Sbjct: 418 IDLTLEMAAEQGVS-VDEEGFRTLMAEQKERARADARSKKTGHTDVRVFHDIEKAMGGGS 476 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 F+GY + V+A++ G A + +VEV+ Sbjct: 477 TFLGY-----------------------TEQAAEATVEALLVDGVAAPAASAPAEVEVIL 513 Query: 516 DQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+TPFYAE GGQL D G + G +++ DVQ G+ VH + G + Sbjct: 514 DRTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGGMTVGEKAYAE 573 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID + R ++ H+ATH+++ L ++ ++Q GS +P LRFD H + ++L Sbjct: 574 IDGERRLAIARAHTATHMVYAGLRNVVSEDLTQAGSENSPSRLRFDFRHGSALEGSQLSD 633 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALC 694 IE VN+ +A++L V T +M+ + A +GA AL G KY VRVV++ G LC Sbjct: 634 IEALVNEKLAEDLAVTTEVMSIDAAREAGAIALFGEKYGSEVRVVTI----GDGFDRELC 689 Query: 695 GGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG 754 GGTHV +TG I + ++SE S+ +G+RRI+A+ G A + + L+ + Sbjct: 690 GGTHVPTTGHIGRITVLSEGSVGSGVRRIDALVGDGAYEFQAKEHALVNQLSQLVGGRAD 749 Query: 755 NVVGRVE----EIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKE 808 + R+E ++ E ++L+ + + L + S I V ++ + E+ S + Sbjct: 750 ELPERIESLLAKLRESEKELEKVRTAQALSQGADLAASAKAIGPVTVVASAVGEMPSAD 808 >gi|213966126|ref|ZP_03394313.1| alanyl-tRNA synthetase [Corynebacterium amycolatum SK46] gi|213951224|gb|EEB62619.1| alanyl-tRNA synthetase [Corynebacterium amycolatum SK46] Length = 886 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 335/913 (36%), Positives = 493/913 (53%), Gaps = 77/913 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR F++ F K GH +PS+SL+ +DP L+F N+GMVPFK F G E P + T++QK Sbjct: 6 IRNRFIQHFVKAGHTEVPSASLV-LDDPNLLFVNAGMVPFKPYFLGNETPDFSTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 CVR D++ VG T RH+TFF+M GNFSFG YFKE AI AW LLT F + Sbjct: 65 CVRT----LDIEEVGITTRHNTFFQMAGNFSFGNYFKEGAITHAWSLLTGAVEDGGFGIP 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 +L++TVY +D+EA +W + G+ ++I R DN+WSM GPCGPCSEIF+D+G Sbjct: 121 AEKLWVTVYLDDDEAHDIWHEKVGVPEERIQRRGMADNYWSMGVPGPCGPCSEIFYDRGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMA 234 E G P + E+ RYIEIWNLVFM+ E + ++ F LPK +IDTGMG+ER+A Sbjct: 181 EYGADGGPEADED--RYIEIWNLVFMENERGEGTGKDSFEILGPLPKKNIDTGMGIERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN--HRVIVDHLRSSSFLIADGILP 292 +LQ N Y+ DL + +I +E++TG KY N+ N RVI DH R+ L+ DG+ P Sbjct: 239 FLLQGVDNVYETDLLRPVIDEAEKLTGSKYSSNHQDNIRFRVIADHSRTGLMLMLDGVTP 298 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +N RGY+LRR++RR + ARLLG P++ L+ M +YPE+ + I Sbjct: 299 SNSDRGYILRRLLRRIIRSARLLGANGPVLEKLIGIAAETMTPSYPEIAENWNRIRRVAV 358 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E++ F KTL G L + + + +L+G AF L+DTHG P+D+ ++ GL Sbjct: 359 AEEKAFTKTLSAGEELFERAATKAKAEGKTVLSGHDAFTLHDTHGFPIDLTIEMAEEAGL 418 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRGSKFM 469 ID F++ + EQR+RA+A S T+ ++ +++ T F GYD L Sbjct: 419 T-IDREEFDREMAEQRARAKADSQAKKQSHTDLHVYREFIDEH-PTSFTGYDRL------ 470 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S + I+ G+ A G ++EV+ D+TP YAEAGGQL Sbjct: 471 -----------------ADESTILGIIADGQKQSFAAEGDEIEVILDRTPLYAEAGGQLA 513 Query: 530 DTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G + D G + I DVQK + +++H IV G +S +D Q R H+ Sbjct: 514 DRGRIVTDSGAVVHINDVQKVGKKLWLHKGIVTAGEFTPGVSAEALVDEQWRHGARQAHT 573 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LG V+Q GS P LRFD + + +T +L+ IE N+ + + Sbjct: 574 ATHLIHGALRQVLGDTVTQAGSMNKPGYLRFDFKYGEQLTPEQLREIEQITNEAVDNDWA 633 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T M E+A A+GA AL Y D VRVV V GG S LCGGTHVS + +I + Sbjct: 634 VNTAEMPLEEAKATGAMALFNENYGDIVRVVEV----GGPFSIELCGGTHVSHSSQIGPV 689 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI----- 763 ++ ESS+ +G+RRIEA +G + +L + + LA+ K + R+ + Sbjct: 690 AVLGESSVGSGVRRIEAYSGMDSFRYLSTERLLAERLATEFKAPSAELPDRIAALAEKLK 749 Query: 764 -----WEEYRKLQLI-HAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDAL 816 +++ QL+ +A L+ S I DV ++ + + + K+++S+ + L Sbjct: 750 AAEKQLADFKAGQLLANAASHLE------SARTIGDVTYLGLKLPDGTEMKDIRSLANDL 803 Query: 817 QKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARL-SAKVLGGGGGGGRPH 873 K++ + +I L+ + K V E + A DL +L A+V G GGG+P Sbjct: 804 AKRLGDRPSVIALISNASGKVPFAASVSDEAVNRGIKAGDLVKLMGAEVG--GKGGGKPA 861 Query: 874 MAQSGGPNGNKAD 886 MAQ G + + D Sbjct: 862 MAQGSGSDASGID 874 >gi|213692473|ref|YP_002323059.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523934|gb|ACJ52681.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458618|dbj|BAJ69239.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 892 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 335/917 (36%), Positives = 503/917 (54%), Gaps = 70/917 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + +T+ Sbjct: 4 ADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRMTSN 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D+D VG+T RH TFF+MLGNFS G YFKE AI AW+LLT D Sbjct: 63 QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +L++T + +DEEA +WK G + + DNFW+ GP GPCSEI+ D+ Sbjct: 119 FDPEKLWVTTFTDDEEARSIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVDR 177 Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232 G E G P + E R+IEIW+LVF +E N + + L + +IDTG GLER Sbjct: 178 GPEYGRDGGPAADET--RFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGLER 235 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290 +A ++Q K N Y+ D +I+A+E+++G KY + V RV+ DH+RS+ +++DG+ Sbjct: 236 LAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSDGV 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N GRGYVLRR++RR + R+LG T+P++ LLP M ++YPEL + E Sbjct: 296 RPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVSEA 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E++ F +TL+ G+ +LD + K D +++G AF L+DT+G P+++ ++ + Sbjct: 356 AYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAADQ 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSK 467 G+ +D F + + EQ+SRARA +L ++ K+ F+GY Sbjct: 416 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGY------- 467 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526 D++ + V I+Q+G+ AV+G VEV+ D+TPFYAEAGG Sbjct: 468 --------------TDMS--ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 511 Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G + D G L++ DVQK + + VH + G L + ID R ++ Sbjct: 512 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIAR 571 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND + Sbjct: 572 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 631 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTHV G+I Sbjct: 632 NLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKI 688 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761 ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 689 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLA 748 Query: 762 EIWEEYRKL------QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815 ++ E R+L QL + L + +D + V + H VD+ K+V+D Sbjct: 749 KLKESDRRLASMYESQLAASVPALVADTKDSAAPVKVAVKNVGH-FGAVDALR-KTVLDV 806 Query: 816 LQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872 + + ++ L G++++ K V + E A DL R +AKVL GGGGGG+P Sbjct: 807 RAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGGGKP 865 Query: 873 HMAQSGGPNGNKADQAI 889 AQ GG + +K +A+ Sbjct: 866 DFAQGGGVDASKIGEAL 882 >gi|145224345|ref|YP_001135023.1| alanyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK] gi|315444677|ref|YP_004077556.1| alanyl-tRNA synthetase [Mycobacterium sp. Spyr1] gi|205830152|sp|A4TBW4|SYA_MYCGI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|145216831|gb|ABP46235.1| alanyl-tRNA synthetase [Mycobacterium gilvum PYR-GCK] gi|315262980|gb|ADT99721.1| alanyl-tRNA synthetase [Mycobacterium sp. Spyr1] Length = 898 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 331/908 (36%), Positives = 492/908 (54%), Gaps = 70/908 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P + T+VQK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWDRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK+ AI+LAW LLT + D Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIELAWSLLTNPVSEGGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGPCSEI++D+G Sbjct: 121 PERLWATVYLDDDEAIELWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPCSEIYYDRGP 180 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E + ++ F LP+ +IDTGMG+ER+A Sbjct: 181 DY--GIDGGPEANEDRYIEIWNLVFMQNERGEGTSKDDFEILGPLPRKNIDTGMGVERIA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI--VNHRVIVDHLRSSSFLIADGIL 291 +LQ N Y+ DL + +I + Y +GN+ V +R+I DH R+++ +I DG+ Sbjct: 239 CLLQGVDNVYETDLVRPVIDLVAGIAPRGYGQGNHTDDVRYRIIGDHSRTAAIIIGDGVT 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRR++RR + A+LLG +P+M L+ + EMG +YPEL+ I Sbjct: 299 PGNEGRGYVLRRLLRRIIRAAKLLGVEQPIMGELMATVRDEMGPSYPELVTDFERINRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L + K +L+GD AF L+DT G P+D+ ++ G Sbjct: 359 IAEETAFNRTLTAGSRLFEDAAETTRKAGSTVLSGDDAFTLHDTFGFPIDLTLEMAAEAG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L+ +D F + EQR RA+A + T+ + G T+F G+D L Sbjct: 419 LS-VDEEGFRGLMAEQRRRAKADAAARKQAHTDLSAYRELVDAGPTEFTGFDEL------ 471 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + ++L +G V + VQ G+ + +VE++ +++PFYAE+GGQ+ Sbjct: 472 TTEARILGI-----FVDGRRVPVVSHVQGGD------APGRVELILNRSPFYAESGGQIA 520 Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D G G G + +TDVQK A+ ++ H VE G ++V +D + R + Sbjct: 521 DEGTVTGTGASQTAKAAVTDVQKIAKTLWAHRITVESGEFVEGDTIVAAVDPRWRHGATQ 580 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG + Q GS P LRFD ++ + IE+ N+ + Sbjct: 581 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALSDDQRSQIEEVTNEAVEA 640 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V E A + GA AL G Y D VRVV + GG S LCGGTHV S+ +I Sbjct: 641 DYEVHNFTTELEKAKSMGAMALFGENYPDEVRVVEI----GGPFSIELCGGTHVRSSAQI 696 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V RVE + E Sbjct: 697 GPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSDEVPARVENLVE 756 Query: 766 EYR-------KLQLIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDALQ 817 R +L+L++A+ +I + ++ + + + +L+S++ ++ Sbjct: 757 RLRAAEKELDRLRLVNARAAAANAA--AGAEQIGGIRLVAQRMAGGISAGDLRSLVGDIR 814 Query: 818 KKIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGG---GGGGGR 871 K+ S ++ L+ + + ++ V + DR A DL KVLG G GGG+ Sbjct: 815 GKLGSDPAVVALISEADDDTVPFVVAVNQAAQDRGLRANDL----VKVLGAAVNGRGGGK 870 Query: 872 PHMAQSGG 879 +AQ G Sbjct: 871 ADLAQGSG 878 >gi|225423779|ref|XP_002277341.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1002 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 300/766 (39%), Positives = 415/766 (54%), Gaps = 70/766 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57 + +R TF+ FF+ H SS ++P NDPTL+F N+GM FK IF G P + Sbjct: 60 ANKVRDTFINFFESKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKL 119 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 +A T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK Sbjct: 120 TRACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKV 178 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L R+Y T + DE EA +W K L ++ DNFW M +TGPC Sbjct: 179 YKLPTDRIYATYFGGDEKSGLSPDTEARDMWLKF--LPPGHVLPFGCKDNFWEMGDTGPC 236 Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EI FD+ G L + + IEIWNLVF+QF +++ LP +DTGM Sbjct: 237 GPCTEIHFDRIGNRDAASLVNNDD--PTCIEIWNLVFIQFNRESDGSLKSLPAKHVDTGM 294 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHL 279 G ER+ ++LQ K +NYD D+F + A +Q TG + + + +RV+ DH+ Sbjct: 295 GFERLTSILQGKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDADKVDMAYRVVADHI 354 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ SF IADG P NEGR YVLRRI+RRA+ Y + +L E + + MG +P Sbjct: 355 RTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNSFVNIVVKVMGDVFP 414 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL Q ++ I E + E+ FGKTL +G+ + + +ILNG AF L+DT+G PL Sbjct: 415 ELKQREVHIREIIAEEEASFGKTLLKGIEKFKKAAQEV-QGKILNGQDAFVLWDTYGFPL 473 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ Q + RGL +D+ FN AL+E R R+R+ GT I Sbjct: 474 DLTQLMAEERGLI-VDVQGFNAALDEARERSRSAQNKQAGGT-----------------I 515 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLT--NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 D S K R V T S++KAI E +E A +G +V +V + Sbjct: 516 VMDADATSALHK--RGVAPTDDSFKFTWFQDHGSVIKAIYSGSEFLESASAGNEVGIVLE 573 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH--AIVE-RGILRTEMSLVL 573 T FYAE GGQ+ DTG G Q+ +VQ G F+ H + E G ++ Sbjct: 574 TTSFYAEQGGQIFDTGSLEGTSGSFQVCNVQ--IYGGFILHIGSFTEASGRFSVGDKVIC 631 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +DY R+ ++ NH+ TH+L+ AL +LG+HV Q GS + P+ LRFD +H KP+ L+ Sbjct: 632 KVDYDRRKVIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVHPDHLR 691 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------DG 686 IE VN+ I L V ++ + DA + +G A+ G Y D VRVVS+ + D Sbjct: 692 KIESIVNEQIDAELDVFSKDASLADAKSINGLRAVFGEVYPDPVRVVSIGQKVEDLLADP 751 Query: 687 GVH-----SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 G S+ LCGGTH+S+T E ++SE I GIRRI A+T Sbjct: 752 GNEKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVT 797 >gi|294507557|ref|YP_003571615.1| Alanyl-tRNA synthetase, class IIc [Salinibacter ruber M8] gi|294343885|emb|CBH24663.1| Alanyl-tRNA synthetase, class IIc [Salinibacter ruber M8] Length = 966 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 335/989 (33%), Positives = 503/989 (50%), Gaps = 147/989 (14%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FFQ GHE++ S+SL+P D TL+FTN+GM FK++F G + Y QK Sbjct: 23 IRQDFLQFFQAKGHEVVSSASLVPEGDGTLLFTNAGMNQFKDVFLGTGQRPYSRAVDTQK 82 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG HHTFFEMLGN+SFG YFK AI+ AW+LL + + L RLY Sbjct: 83 CLRVSGKHNDLEEVGHDTYHHTFFEMLGNWSFGDYFKAEAIRWAWELLVERWGLAPDRLY 142 Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 TV++ D+ EA+ LW + L ++++ + +NFW M +TGPCGPCSE+ D Sbjct: 143 ATVHEGDDDFGLSADAEAYDLWLSETPLPEERVLYEPSKENFWMMGDTGPCGPCSELHVD 202 Query: 179 ----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 + G + + + +E+WNLVF+Q+ Q L +DTGMG ERM Sbjct: 203 LRPPEARQETPGRELVNIDHPQVMELWNLVFIQYNAQTDGSLEPLDDQHVDTGMGFERMV 262 Query: 235 TVLQEKTNNYDIDLFKHLIQA------SEQVTGMKYEGNNIVNH----------RVIVDH 278 VLQ K + YD DLF L+QA E++ G Y+ +I + RV+ DH Sbjct: 263 AVLQGKESTYDTDLFAPLLQAMADRSPREEIRG--YDDLHIEDDDEHEQVRIALRVVADH 320 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 +R+ +F I+DG++P+NEGRGYV+RRI+RRA+ Y + L EP + L+ L +MG + Sbjct: 321 IRAIAFAISDGVMPSNEGRGYVIRRILRRAVRYGYQTLELEEPFLHRLVDPLIEKMGGPF 380 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--------------------- 376 L + + IE+ +RSE+E F +TL G+ + V+ H+ Sbjct: 381 DGLAEQQEFIEQAIRSEEESFLETLGTGIEFFERVVPHVTGFQDTDGEESDRLLGALRED 440 Query: 377 ---------------GKDEILN------------GDVAFKLYDTHGLPLDIMQDILCARG 409 +++IL+ G +AF L+DT+G P+D+ + + R Sbjct: 441 AQAMDLLEKAYVDTDDENDILHSFARTARGGTLPGQIAFLLHDTYGFPIDLTRLMARERD 500 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ + ++ Q+ RARA S + + W S+ A+ F+GYD Sbjct: 501 L-DVDMEGYETLMDRQQERARAASDFAVDQSDVQAWQSVSPGE-ASVFVGYD-------- 550 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI----VEEAVSGQKVEVVFDQTPFYAEAG 525 +A+V E+ V E Q+ EV +TPFYAEAG Sbjct: 551 -----------------------RAVVPDAEVRAVRVVETGDTQQYEVELSRTPFYAEAG 587 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+GDTG +Q+ D Q++ E I H V+ + + +D + R + Sbjct: 588 GQVGDTGTLRFGDESVQVLDTQREGERI-AH--TVDTLPEPLDGPVEAAVDAERRNHIRT 644 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATHL+H L LG HV Q GS + PD LRFD +H + L+ IE VN I Q Sbjct: 645 HHTATHLMHAVLRETLGDHVQQKGSLVAPDRLRFDFSHFDAVDEDTLRHIERRVNTAIQQ 704 Query: 646 NLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 N+P R + ++A+ GA AL +Y DRVRV++ + + S LCGGTHV +TGE Sbjct: 705 NIPKQEARDVPIDEALDRGATALFDEQYGDRVRVITFDPD----FSMELCGGTHVDATGE 760 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L +SE S+ +G+RR+EA+ G+ A H+ + E L + ++ + E+ Sbjct: 761 IGLFRFLSEGSVASGVRRVEAVAGKAALEHVESELETLTRARRQFRSLHTSLPEAIAEVQ 820 Query: 765 EEYRKL-----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK- 818 EE +L QL + QL+ A V+ ++ + +D ++ MD LQ+ Sbjct: 821 EERDRLAGEVDQLRRGQLSDQLDT--FIAENAASVDGITVVTGRLD----RASMDDLQEL 874 Query: 819 ------KIQSGIIMLVGISKE--KKASVLIVVTEDLLDR--FNAVDLARLSAKVLGGGGG 868 K+ G + ++G E +KA V+ V +DL+D A DL L GGGG Sbjct: 875 GQQFRDKLGQGAVGVLGSVGEDGEKAYVVATVADDLVDDGALRAGDLVGTLGDRL-GGGG 933 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GGRP +A +GG + D + GV + ++ Sbjct: 934 GGRPSLASAGGRDPEALDTVLDGVPALVR 962 >gi|118469604|ref|YP_887342.1| alanyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155] gi|205830154|sp|A0QWQ4|SYA_MYCS2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118170891|gb|ABK71787.1| alanyl-tRNA synthetase [Mycobacterium smegmatis str. MC2 155] Length = 896 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 328/909 (36%), Positives = 483/909 (53%), Gaps = 74/909 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P + T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWNRATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT + D Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWTLLTNPVEEGGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ TVY +D+EA LW++++GL A++I R DN+WSM GPCGP SEI++D+G Sbjct: 121 PERLWATVYLDDDEAIGLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E + +E F LP+ +IDTGMG+ER+A Sbjct: 181 EY--GVEGGPEANEDRYIEIWNLVFMQNERGEGTSKEDFEILGPLPRKNIDTGMGIERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291 +LQ N Y+ DL + +I V Y N V +R+I DH R+++ +IADG+ Sbjct: 239 CLLQGVDNVYETDLLRPVIDKVAAVAPRGYGAGNHDDDVRYRIIADHTRTAAIIIADGVS 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P NEGRGYVLRR++RR + A+LLG +P+M L+ + MG +YPEL+ I Sbjct: 299 PGNEGRGYVLRRLLRRIIRAAKLLGVEQPVMGDLIATVRDAMGPSYPELVTDFERINRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L + K +L+G AF L+DT+G P+D+ ++ G Sbjct: 359 VAEETAFNRTLASGSKLFEDAARATKKSGATVLSGSDAFTLHDTYGFPIDLTLEMAAEAG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L+ +D F + EQR RA+A + T+ + G T+F G+D Sbjct: 419 LS-VDQEGFRTLMAEQRQRAKADAAARKQAHTDLSAYRELVDAGPTEFTGFD-------- 469 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE----IVEEAVSGQKVEVVFDQTPFYAEAG 525 +LT+ + + I G+ + + + +VE++ D+TPFYAEAG Sbjct: 470 -------------ELTS--EATILGIFVDGKRVPVVSHDGLEADRVELILDRTPFYAEAG 514 Query: 526 GQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GQ+ D G G G R +TDVQK A ++ H VE G ++ +D + RR Sbjct: 515 GQIADEGTISGTGASGTARAAVTDVQKIARTLWAHRVNVESGEFVEGDTVTAAVDPKWRR 574 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + HS TH++H AL +LG + Q GS P LRFD P++ + IE+ N Sbjct: 575 GATQGHSGTHMVHAALREVLGPNAVQAGSLNRPGYLRFDFNWQGPLSDDQRTQIEEVTNQ 634 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + + V T + E A A GA A+ G +Y D+VRVV + GG S LCGGTHV + Sbjct: 635 AVEADYEVHTFVTELEKAKAMGAMAMFGERYPDQVRVVEI----GGPFSLELCGGTHVHN 690 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 + +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V RV Sbjct: 691 SAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVA 750 Query: 762 EIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDA 815 + E + + + +L + V ++ +S + + +L+S++ Sbjct: 751 NLVERLKAAEKELDRMRLANARAAAVNAVAGAETVGKVRLVAQRMSGGMSANDLRSLVGD 810 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ K+ S ++ I++ + +V VV +DL R N DL + A + G GGG Sbjct: 811 IRGKLGSEPAVVALIAEGENDAVPFVVAVNPAAQDLGLRAN--DLVKQFAAPV-NGRGGG 867 Query: 871 RPHMAQSGG 879 + +AQ G Sbjct: 868 KADLAQGSG 876 >gi|291456669|ref|ZP_06596059.1| alanine--tRNA ligase [Bifidobacterium breve DSM 20213] gi|291381946|gb|EFE89464.1| alanine--tRNA ligase [Bifidobacterium breve DSM 20213] Length = 892 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 332/917 (36%), Positives = 504/917 (54%), Gaps = 70/917 (7%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + +T+ Sbjct: 4 ADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRMTSN 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D+D VG+T RH TFF+MLGNFS G YFKE AI AW+LLT D Sbjct: 63 QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +L++T + +DEEA +WK G + + DNFW+ GP GPCSEI+ D+ Sbjct: 119 FDPEKLWVTTFTDDEEARSIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVDR 177 Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232 G E G P + E R+IEIW+LVF +E N + + L + +IDTG GLER Sbjct: 178 GPEYGRDGGPAADET--RFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGLER 235 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290 +A ++Q K N Y+ D +I+A+E+++G KY + V RV+ DH+RS+ +++DG+ Sbjct: 236 LAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSDGV 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N GRGYVLRR++RR + R+LG T+P++ LLP M ++YPEL + E Sbjct: 296 RPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVSEA 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E++ F +TL+ G+ +LD + K D +++G AF L+DT+G P+++ ++ + Sbjct: 356 AYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAADQ 415 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLRGSK 467 G+ +D F + + EQ+SRARA +L ++ K+ F+GY Sbjct: 416 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGY------- 467 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526 D++ + V I+Q+G+ AV+G VEV+ D+TPFYAEAGG Sbjct: 468 --------------TDMS--ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 511 Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G + D G L++ DVQK + + VH + G L + ID R ++ Sbjct: 512 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIAR 571 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND + Sbjct: 572 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 631 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTHV G+I Sbjct: 632 NLAVTTKEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHVDHVGKI 688 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761 ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 689 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNTLLA 748 Query: 762 EIWEEYRKL------QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDA 815 ++ E R+L QL A L + ++ + + + H VD+ K+V+D Sbjct: 749 KLKESDRRLASMYEAQLAAAVPALVEDAKNSAAPVKVAIKNVGH-FGAVDALR-KTVLDV 806 Query: 816 LQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRP 872 + + ++ L G++++ K V + E A DL R ++K+L GGGGGG+P Sbjct: 807 RGQLGEDAPAVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGASKIL-GGGGGGKP 865 Query: 873 HMAQSGGPNGNKADQAI 889 AQ GG + +K ++A+ Sbjct: 866 DFAQGGGADASKINEAL 882 >gi|184200992|ref|YP_001855199.1| alanyl-tRNA synthetase [Kocuria rhizophila DC2201] gi|205830074|sp|B2GIA1|SYA_KOCRD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|183581222|dbj|BAG29693.1| alanyl-tRNA synthetase [Kocuria rhizophila DC2201] Length = 895 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 328/917 (35%), Positives = 488/917 (53%), Gaps = 67/917 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I +L +F+ H ++PS+SL+ P MFT +GMVPF F GQE P YQ T+VQK Sbjct: 6 ITQRWLSYFEARDHHVVPSASLV-SQQPGAMFTIAGMVPFIPYFLGQETPPYQRATSVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG+T RH TFF+M GNFSFG YFK +AI +AW+LLT F LD Sbjct: 65 CIRT----LDIDEVGKTARHGTFFQMAGNFSFGDYFKSQAIPMAWELLTTAPEQGGFGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL++TVY+ D+E++ LW GL A +I R+ ++N+W + GP GP SEIF+D+G Sbjct: 121 PERLWVTVYEGDQESYDLWHDTVGLPAQRIQRMGRDENYWDTGQPGPAGPDSEIFYDRGP 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERFIL---PKMSIDTGMGLERMATV 236 G G + + +RYIEIWNLVFMQ++ + N ++ IL P+ +IDTG+G+ER+A + Sbjct: 181 RY-GKDGGPAVDDDRYIEIWNLVFMQYQRGEGNGKDYEILGELPRKNIDTGLGVERLAML 239 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEG---------NNIVNHRVIVDHLRSSSFLIA 287 LQ N Y+ D + ++ A+ +++G Y G ++ V RV+ DH+RSS LIA Sbjct: 240 LQGVENFYETDQVRPVLDAAAKLSGRTYHGAEKAGEQGYDDDVRMRVVADHVRSSLMLIA 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P NEGRGY+LRR++RRA+ RLLG TEP + LLP M YP + + I Sbjct: 300 DGVTPGNEGRGYILRRLLRRAVRAMRLLGVTEPCLPVLLPESRDAMKGVYPVVAEDFERI 359 Query: 348 EETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F KT++ G L+ V G+ L+G AF L+DT G P+D+ ++ Sbjct: 360 SRIAYAEERAFLKTIESGTTRLEHAVEVAKGEQRALSGADAFALHDTFGFPIDLTLEMAE 419 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 G++ +D +F + EQR RA+ + + ++F GY L Sbjct: 420 EAGVS-VDETAFRALMAEQRQRAQEDARAKKGALADLSELRRMLDDHGSEFTGYTELV-- 476 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + V+AI+ G V A G+ VEVV ++TPFYAEAGG Sbjct: 477 ---------------------TPTTVRAILSGGVSVPAASEGEHVEVVLERTPFYAEAGG 515 Query: 527 QLGDTGCA-IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 Q D G DG +L + DVQ+ +G+ VH V G + + +D + R Sbjct: 516 QAADVGTIDSSDGAQLTVEDVQQPVKGLSVHKVTVSAGQVLVGDEVTARVDSRRRHDGEA 575 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG Q GS LRFD +H + + + +++ IE N I Sbjct: 576 AHSGTHVIHAALHDVLGPDAVQRGSFNKEGYLRFDFSHGEALNAGQIQEIEQIANTAIRD 635 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + VVTR M +A GA +L G KY D VRVV E G S LCGGTHV ST ++ Sbjct: 636 DFEVVTREMPLAEAKKLGAMSLFGEKYGDEVRVV----EMNGPWSRELCGGTHVGSTSQL 691 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG-----NVVGRV 760 L +VSE S+ +G RR+EA+ G + +HL + + L LKV + + Sbjct: 692 GSLSLVSEQSVGSGNRRVEALVGLNSFNHLAAERTLVNQLTGMLKVQSSAELPERLAATL 751 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISEVDSKE-LKSVMDALQK 818 +++ E R+L + ++ + ++ V + H E+ S + L+S+ L+ Sbjct: 752 DKLKETERQLAGLRQQQLQAQAGQLARDAERVGPVTAVLHDAGEIASADALRSLALDLRT 811 Query: 819 KIQS--GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMA 875 ++ S + + G++ ++ V++ V + D A L R +A L GGGGGG+P +A Sbjct: 812 RLGSEPAVAAVTGVANDRPL-VVVAVNDAARDAGLAAGQLVRTAATTL-GGGGGGKPDVA 869 Query: 876 QSGGPNGNKADQAIAGV 892 Q GG + K A+A + Sbjct: 870 QGGGSDAAKIPDALAAI 886 >gi|311742342|ref|ZP_07716151.1| alanine--tRNA ligase [Aeromicrobium marinum DSM 15272] gi|311313970|gb|EFQ83878.1| alanine--tRNA ligase [Aeromicrobium marinum DSM 15272] Length = 886 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 314/865 (36%), Positives = 473/865 (54%), Gaps = 62/865 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL F+ GH ++PS+ L+ + L+F N+GMVPFK F GQE P + T Sbjct: 2 DTAEIRRRFLAHFENAGHTVVPSAPLLLDDP-NLLFVNAGMVPFKPYFLGQETPPWPTAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD--- 119 +VQKCVR D++ VG+T RH TFF+M GNFSFG YFKE AI AW L+T + Sbjct: 61 SVQKCVRT----LDIEEVGKTTRHGTFFQMNGNFSFGDYFKEGAITHAWRLITGSINDGG 116 Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 +D +++TV D+E+ ++WK+++GL ++I DN+W M GP GPCSEI+ Sbjct: 117 LGIDADTIWVTVLHSDQESREIWKRVAGLPDERIQDRGLLDNYWHMGVPGPGGPCSEIYV 176 Query: 178 DQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERF----ILPKMSIDTGMGL 230 D+G E P G P E+ R++EIWNLVFMQ E + ++RF LP +IDTGMGL Sbjct: 177 DRGPEFGPDGGPVVDED--RFLEIWNLVFMQEEITDVLAKDRFEVVGALPHQNIDTGMGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288 ER+A +LQ+K N Y+ID +I+ + Q++G Y ++ V RVI DH+RS L+ D Sbjct: 235 ERVAYLLQDKRNLYEIDEVYPVIETASQISGRTYGRDHADDVRFRVIADHVRSGLMLMGD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NE RGYVLRR++RRA+ RLLG+ +P + LLP M ++YPEL IE Sbjct: 295 GVTPGNEARGYVLRRLLRRAVRSMRLLGFEDPALPLLLPVSLERMKASYPELEADFPRIE 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 + +E+E F +TL +G + +G + + + L+GD AF L+DT+G P+D+ ++ Sbjct: 355 QVAYAEEEAFRQTLGKGTQIFEGAAAAVKQQGGSGLSGDAAFTLHDTYGFPIDLTLEMAS 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYDLLRG 465 +GL+ +D F + EQRSRA+A + G + ++ + + G T ++ Y Sbjct: 415 EQGLS-VDEDGFRALMAEQRSRAKADAKSKKGGHADTAVYRAALDAGGPTDWLAY----- 468 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S E R V A++ G V +G EVV D+TPFYAE+G Sbjct: 469 STLTTESR------------------VLALIAGGRTVPAIGAGSVGEVVLDRTPFYAESG 510 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ D G DG R ++ DVQ+ G+ VH V G L E L +D + R Sbjct: 511 GQNADAGHLQWDGGRAEVLDVQRPVRGLVVHQVRVLDGELTVESPLEAAVDPEWRLGARQ 570 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG Q+GS P LR D S ++ +L+ +E+ N + Sbjct: 571 AHSGTHVVHAALREVLGPTALQSGSYNRPGYLRLDYGWSGALSPDQLRGVEEASNRALRA 630 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +LPV + M+ +A GA AL G Y + VRVV + GG S LCGGTHV + +I Sbjct: 631 DLPVTAQTMSLPEAREWGALALFGETYGEDVRVVEI----GGPWSRELCGGTHVDRSSQI 686 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I S+ S+ +G RR+EA+ G +L + + ++ L LK +V RV+++ E Sbjct: 687 GTVVITSDGSVGSGNRRVEALVGIEGFQYLAKERDVVRQLTDLLKAKPDDVPSRVQDLME 746 Query: 766 EYRKLQLIHAKRK---LQLNVEDLSCHKIADVNFMSHIISEVD---SKELKSVMDALQKK 819 R + + K L DL+ H DV ++ + + +D +L+++ ++ + Sbjct: 747 RLRAAEKAAERIKAAELLAGAGDLA-HGAVDVGGVAFVGARLDGVGGGDLRTLALDVRGR 805 Query: 820 I---QSGIIMLVGISKEKKASVLIV 841 I + ++ LVG+ +K A V+ V Sbjct: 806 IPADRPAVVALVGVVDDKPAVVVAV 830 >gi|301165787|emb|CBW25359.1| alanyl-tRNA synthetase [Bacteriovorax marinus SJ] Length = 878 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 329/923 (35%), Positives = 487/923 (52%), Gaps = 78/923 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 N IR FL++F+K+ H + ++S++P NDPTL+F NSGM P K F G+E+P + + Sbjct: 5 NSREIREKFLDYFEKHNHLKIKAASVVPQNDPTLLFINSGMAPLKPYFLGKEEPPNKRLC 64 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHH-TFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 Q C+R D+D+VG +RHH T FEM+G++S G Y+KE A LA+ LL E D Sbjct: 65 NFQPCIRT----KDIDDVG--DRHHLTIFEMMGSWSIGDYYKELACSLAYGLLVDELGFD 118 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPC 172 +RLY TVY D E+ + WKK G+ D I+ + +DNFW A ETGPCGPC Sbjct: 119 PKRLYFTVYGGNEALGIKPDHESVEAWKKC-GVPEDHIVMLG-DDNFWGPAGETGPCGPC 176 Query: 173 SEIFFDQG-ECIPGGLPGSS-EEGERYIEIWNL-VFMQFEQQNKQERFILPKMSIDTGMG 229 +E+FFD G E P PG ++ RYIEIWN VFM+ ++ LP S+DTG G Sbjct: 177 TEVFFDCGPEYGPEYKPGKHFDDVSRYIEIWNAGVFMELNKKKDGSFTPLPLKSVDTGSG 236 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIA 287 LER+A V+ + Y+ DL + L+ S ++ +K +G+ R++ DH+R++ F+++ Sbjct: 237 LERLAMVMNGHDSVYETDLMQPLMDISHKL--LKSDGSEAFTKKARMLTDHIRAAVFILS 294 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLM--MHLLPALCTEMGSAYPELIQAKL 345 +G+ P+NEG+GY+ RR++R+ C A L+ + ++ + M YP++ AK Sbjct: 295 EGVTPSNEGQGYIPRRLIRK--CVAALMAKKASKIDFSEMVDLIVEMMSDYYPQIKSAKE 352 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLS-HLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 +I L +E F + GL L++ L+ + ++ G VAF L THGLPLD+++ Sbjct: 353 MITYNLNNEINDFIPIVKTGLELIEKELAENKSSNKSFPGKVAFDLVTTHGLPLDVLKSD 412 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 L R + +D +++ EE R +R S SG EK+ L K T F+GY+ Sbjct: 413 LSDREIE-LDQAEYDKCYEEHRKASRVISRKGASGDQEKVE-ELVAKLSTTDFVGYE--- 467 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 T +S V +++ E V+ G+ +TPFY E+ Sbjct: 468 --------------------TEETTSKVNLLIKDSEKVDSVKEGESFLFTTVKTPFYGES 507 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ+GD G A D +++I D K + I VH A V G ++ + L +D + R + Sbjct: 508 GGQIGDCGWATTDSAKVEIVDTMKVGK-IHVHVANVISGEVKDGSEIQLKVDSEVRSDIK 566 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLLH AL ++G H Q GS + D LRFD + +T EL IE N I Sbjct: 567 RNHSATHLLHAALHKVVGKHAVQKGSLVRSDRLRFDFQNQSAVTKEELDKIEALTNQWIM 626 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +N T +++ + AI GA AL G KY+ +VRV+S G +S LCGGTHVS TG+ Sbjct: 627 ENSGSETDLLDYDAAIEKGAIALFGEKYDSKVRVISF-----GENSVELCGGTHVSRTGD 681 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I L+ I SESS+ GIRRIEA+TG+ A L ++ L+ + L V +++E+ Sbjct: 682 IGLMLITSESSVAKGIRRIEAVTGREAYKLLQERNNILRKTSELLSVKPSEFESKIQELK 741 Query: 765 EEYRKLQLIHAKRKL------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 ++ + K N ++S KI F++ + D LK + D L Sbjct: 742 KKSSAKKAAPKKVSATDTKFENENKIEVSGQKI----FVAQLNDNADV--LKDLGDQLLA 795 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 K + II L G + K V +DL + A DL + K + GG GGG+PH AQ G Sbjct: 796 KGEYKIICLAG-NDGKTIRAFSWVGDDLNKKVKAGDLLKELLKPV-GGRGGGKPHFAQGG 853 Query: 879 GPN---GNKADQAIAGVASFLKK 898 P+ K I+ V SFLK+ Sbjct: 854 SPDVASMGKIFSNISNVESFLKE 876 >gi|302823356|ref|XP_002993331.1| hypothetical protein SELMODRAFT_136926 [Selaginella moellendorffii] gi|300138840|gb|EFJ05593.1| hypothetical protein SELMODRAFT_136926 [Selaginella moellendorffii] Length = 920 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 298/806 (36%), Positives = 451/806 (55%), Gaps = 81/806 (10%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-------- 57 +IR TFL FF GH+LLP SSL+P +DPT++ T +GM+ FK IF GQ + Sbjct: 13 AIRRTFLNFFAARGHQLLPGSSLVP-DDPTVLLTIAGMLQFKPIFLGQATTLDNVLLSRA 71 Query: 58 -----YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112 + T QKC+R ND++NVGRT+RHHTFFEMLGNFSFG YFK AI+ AW+ Sbjct: 72 QVPRRFACAVTSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKHDAIRWAWE 127 Query: 113 LLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 L T E+ L R++++VY +D+EA +W+ G+ ++I ++ DNFW+ TGPCGPC Sbjct: 128 LATSEYKLPAARVWVSVYKDDDEALAIWRDHVGIPEERIKKLGEEDNFWASGPTGPCGPC 187 Query: 173 SEIFFDQGECIPGGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 SE++FD P ++ G+ R++E +NLVFMQ+ + + + +L + +IDTG+GL Sbjct: 188 SEMYFD---FHPERGTDDADLGDDTRFLEFYNLVFMQYNRNDDGKLELLKQKNIDTGLGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIA 287 ERMA +LQ+ NNY+ DL +IQ + ++ G+ Y + +VI DH R+ +LI+ Sbjct: 245 ERMARILQKVPNNYETDLIYPIIQRASELAGVNYTAADDRTKTYLKVIGDHSRAVVYLIS 304 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGY-------TEPLMMHLLPALCTEMGSAY-PE 339 DG+ P+N GRGY++RR++RR + RLLG +E + L + M S P+ Sbjct: 305 DGVTPSNIGRGYIVRRLIRRIVRMGRLLGIRGDGEGNSEGTFLPSLAKVVISMSSNVDPD 364 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--------DEILNGDVAFKLY 391 + Q I E L E+ RF +TL+RG LL L +L+G F LY Sbjct: 365 VKQNAGRIFEELEKEELRFVQTLERGEKLLSQKLEEAAAACRRDGSTKPVLSGKDVFMLY 424 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-AHS-LGLGSGTTEKIWFSLK 449 DT+G P++I +++ + +D+ F +E QR +++ AH+ + L +G T SL Sbjct: 425 DTYGFPVEITEEVAGENDVQ-VDMAGFETEMEYQRRQSQEAHNVVKLSAGGTAAELTSLV 483 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 E T+F+GY L + V+A++ +G +V E G Sbjct: 484 E----TKFVGYTTLES-----------------------IAEVRALIARGGLVTEVREGD 516 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGIL 565 +VE+V D TPFYAE+GGQ+GD G + G +Q+ DVQK + +H IV++G + Sbjct: 517 EVEIVLDTTPFYAESGGQIGDNGLLVCRGGETDCIVQVKDVQKLGSNLIIHKGIVQQGTM 576 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 ++ ++ RR+ H+ATHLL AL +LGS SQ GS + D LRFD T S+ Sbjct: 577 AVGNNVQALVESSLRRRAQAQHTATHLLQAALKKVLGSETSQAGSLVAFDRLRFDFTLSR 636 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685 + E+ +E VN+ I+ +P+ ++M +A SGA A+ G KY ++VRVV V Sbjct: 637 KMAEEEVVQVEALVNEWISMAVPLEWKVMPLAEAKNSGAIAMFGEKYGEQVRVVDVP--- 693 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 G+ S LCGGTHVS+T EI IV I +G++RIEA+ G H+ ++ L+ + Sbjct: 694 -GI-SKELCGGTHVSNTSEIRGFKIVLVEGIASGVKRIEAVAGNAFIDHIFARENALRQI 751 Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQ 771 S LK ++ R+ + +E + L+ Sbjct: 752 CSSLKAKPEDLPARISGLQDELKALK 777 >gi|301604154|ref|XP_002931707.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Xenopus (Silurana) tropicalis] Length = 968 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 336/970 (34%), Positives = 492/970 (50%), Gaps = 92/970 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 S IR F++FF++N H + SS+ +P +DPTL+F N+GM FK IF P + Sbjct: 7 ASEIRQKFIDFFKENAHTYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A +LA DLLTKEF Sbjct: 67 NRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKEF 126 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 +D RLY+T + + D E ++W + GL +I+ + DNFW M +TGPCG Sbjct: 127 GIDIERLYVTYFGGNEAAGLEPDLECKQIWLNL-GLPESRILPGSMKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI FD+ GG + + + +EIWNLVF+QF ++ LPK SIDTG Sbjct: 186 PCSEIHFDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRETDGTLKPLPKKSIDTG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278 MGLER+ +VLQ K +NYD DLF +A E+ TG + + + +RV+ DH Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIEKGTGARPYTGKVGAEDVDGIDMAYRVLADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 R+ + +ADG P N GRGYVLRRI+RRA+ YA L ++ L+ + +G+A+ Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASKGFFATLVDVVVQSLGNAF 361 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + ++++ + E+ +F KTL+RG +LD ++ LG+ +++ GD A+ LYDT+G P Sbjct: 362 PELKKDPDMVKDIINEEETQFLKTLNRGRRILDRKINSLGEHKVIPGDTAWLLYDTYGFP 421 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ I RGL +D+ SF EE+R A+ S G G+G + + + Y + Sbjct: 422 VDLTSLIAEERGLT-LDLESF----EEERKAAQLKSQGKGTGDEDLLMLDI---YAIEEL 473 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 L K K + + + VKAI + VEEA +GQ+ +V D+ Sbjct: 474 RSQGLEPTDDLPK--YKYTSNADGVYEFESLIATVKAIRRDKMFVEEASTGQECGLVLDK 531 Query: 518 TPFYAEAGGQLGDTGCAIGD----GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 T FYAE GGQ D G + + + + T + G +V H G L+ + L Sbjct: 532 TCFYAEQGGQTYDEGYMVKEEESSEDKTEFTVRNTQVRGGYVLHMGTLYGHLKVGDQVCL 591 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ E++ Sbjct: 592 YVDEPKRRPIMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQEIR 650 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED----- 685 E+ NDII +N V + +A A G A+ Y D VRVVS + ED Sbjct: 651 KTEEIANDIIKENKVVYALDCSLAEAKAIQGLRAVFDETYPDPVRVVSIGIPVEDLLADP 710 Query: 686 ----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD-- 739 G + S CGGTH+ ++G IV+E +I GIRRI A+TG A+ L QD Sbjct: 711 SSPAGSITSVEFCGGTHLQNSGHAGPFIIVTEEAIAKGIRRIVAVTGAEAQKALRRQDAL 770 Query: 740 --------EKLKSLASFLKVSQGNVVGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLS 787 +K+K S K Q + E + +++K L + L+ ++DL Sbjct: 771 KVNLSDLEKKVKKQNSPNKDVQKEIADLSENLATASIAQWQKDVLREQLKTLKKTMDDLD 830 Query: 788 CHKIADVN-----FMSHIISE--------------VDSKELKSVMDALQKKIQSGIIMLV 828 ADV +I E +K L + L+ + M+ Sbjct: 831 RASKADVQKRVLEITKQLIEEHPNQPLLVLEMENGASAKALNESLKLLKSQSPHTAAMIF 890 Query: 829 GISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + K + L V +D D+ + L G GGG+ AQ+ G N Q Sbjct: 891 SVDNDAGKITCLCQVPQDTADKGLKANEWVQQVSDLMDGRGGGKDTSAQATGKNVGCLSQ 950 Query: 888 AIAGVASFLK 897 + F K Sbjct: 951 VLKLAEDFAK 960 >gi|317157868|ref|XP_001826622.2| alanyl-tRNA synthetase, cytoplasmic [Aspergillus oryzae RIB40] Length = 1015 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 298/772 (38%), Positives = 428/772 (55%), Gaps = 72/772 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQ 59 S+R F+++FQKNGH + S+ ++P +DPTL+FTN+GM FK+IF G P + Sbjct: 69 SVRDAFIQYFQKNGHTFVASAPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPQSDFANLKS 128 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 AV T QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W+L+TK + Sbjct: 129 AVNT-QKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAINYSWELMTKIYG 187 Query: 120 LDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 LD +RLY+T ++ D EA +LWK + G+ D I+ DNFW M + GPCGP Sbjct: 188 LDPQRLYVTYFEGSKEGGLSPDLEAKELWKAV-GVPEDHILPGNMKDNFWEMGDQGPCGP 246 Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ GG S +++ +EIWN VF+Q+ +++ + LP +DTGM Sbjct: 247 CSEIHYDR----IGGRNASNLVNQDDPNVLEIWNNVFIQYNRESDRSLKPLPNKHVDTGM 302 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHL 279 G ER+ +VLQ K++NYD D+F L Q + +TG + Y+G V +RV+ DH+ Sbjct: 303 GFERLVSVLQNKSSNYDTDVFSPLFQTIKDITGARPYQGRFGVEDADGIDTAYRVVADHV 362 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAY 337 R+ +F I+DG+ P NEGRGYV+RR++RR YAR E ++P L +MG + Sbjct: 363 RTLTFAISDGVAPNNEGRGYVIRRVLRRGARYARKYFRVEIGNFFSKIVPTLVDQMGDMF 422 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395 PE+ + + + E L E+ F KTLDRG + D+ L+G ++LYDT G Sbjct: 423 PEVKRKQQDVMEILDEEEISFAKTLDRGERQFEHYAQQAKAKGDDKLHGADVWRLYDTFG 482 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + RGL ID F EE RSRA+ S G + + + + G Sbjct: 483 FPVDLTRIMAEERGLR-IDDTEF----EEARSRAKEASKGQKKAAADTVKLDVHD-LGKL 536 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVE 512 + + D+ + + K DR +++ VKAI E+ G ++ Sbjct: 537 EKMN-DVPKTNDSAKFDR------------GNITAQVKAIYHGKSFHLSTEQIPEGDQLG 583 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 ++ D+T FYAE GGQ DTG + DG L++ DVQ A G +H ++ G L + Sbjct: 584 LILDRTNFYAEQGGQENDTGRIVIDGQAELEVGDVQLYA-GYVLHTGFMKYGSLSVGDEV 642 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H P+T + Sbjct: 643 ICEYDELRRWPIRNNHTGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKSPVTDKD 702 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH- 689 L+ IED + I QN V ++ + A SG A+ G Y D VRVVSV E + Sbjct: 703 LERIEDISTEYIRQNCAVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVELEEILK 762 Query: 690 ----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 763 NVKDPRWEKVSIEFCGGTHVQKTGDIKELVILEESGIAKGIRRIIAVTGEDA 814 >gi|224014532|ref|XP_002296928.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335] gi|220968308|gb|EED86656.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335] Length = 933 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 299/762 (39%), Positives = 426/762 (55%), Gaps = 71/762 (9%) Query: 3 NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S IR+TF+ +FQ K+ H +PSS P NDPTL+FTN+GM FK IF G+ P + Sbjct: 3 TTSKIRSTFISYFQSKHSHTFIPSSPSAPLNDPTLLFTNAGMNQFKPIFLGRAPPGTELA 62 Query: 62 TTV-----QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 T QKC+RAGGKHNDL++VG+ HHTFFEMLG++SFG YFK+ AI AWDLLT+ Sbjct: 63 TLTRAVNSQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGSWSFGDYFKKEAIDYAWDLLTE 122 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + +++ RLY T + +ED EA W + L ++++ + DNFW M +TGP Sbjct: 123 VYGIEEERLYATYFQGDEALGLEEDTEAKDFWLRY--LPEERVLGCSAKDNFWEMGDTGP 180 Query: 169 CGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSID 225 CGPCSEI +D+ G L +E+ IEIWNLVF+QF N+ E + LP +D Sbjct: 181 CGPCSEIHYDRIGNRDASAL--VNEDDPDVIEIWNLVFIQF---NRDENGLNPLPAKHVD 235 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGN--------NIVNHRVIV 276 TGMGLER+ ++LQ K++NYDID F + A E+V + YEG +R + Sbjct: 236 TGMGLERLCSLLQNKSSNYDIDAFTPIFDAIEKVANVGPYEGKLGEEDKTLKDTAYRAVA 295 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGS 335 DH R+ +F +ADG +P NEGRGYVLRRI+RRA Y + + EP L+P + G Sbjct: 296 DHARTLTFALADGAVPDNEGRGYVLRRILRRATRYGQQILKCEPGFFSTLVPVVVEIFGE 355 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 YPELI + I E ++ E+E F LDRG+ + +S K +++ GD AF LYDT G Sbjct: 356 HYPELIANQANIIEIVQEEEEAFSTMLDRGIKYFEEEISD-DKKKLVPGDKAFFLYDTLG 414 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL---GLGSGTTEKIWFSLKEKY 452 P+D+ + + G+ +D+ F + +E Q+ R+R L GLG E I + + + Sbjct: 415 FPIDLTELMATEAGMT-VDMKGFEEEMEGQKQRSREARLAAKGLGGQRLELI--AEQTAW 471 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI------VQQGEIVEEAV 506 A + I D SK+ D V + +KA+ + +G++ +E Sbjct: 472 LADEGIA-DTDDSSKY--------------DWDKVVDASIKAVFTSDGFLGEGDVAKE-- 514 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILR 566 G V +V D+T FYAEAGGQ D G +G L + DVQ G +H ++ +G + Sbjct: 515 -GDTVGLVLDKTSFYAEAGGQDTDLGTISFEGGELFVNDVQAYG-GYILHSGVISKGSVS 572 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 +++ +DY RR ++ NHS TH+L+ AL +LG Q GS + LRFD +H Sbjct: 573 VGIAVKCQVDYARRRDVAPNHSMTHVLNAALREVLGEGCDQRGSQCNDEKLRFDFSHKSA 632 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYED 685 +++ +L+ E V D I +NLPV +M+ DA A G A+ G Y D VRVV V Sbjct: 633 MSTEQLRDTEIYVRDTIEKNLPVTADVMSLADAKAIPGVRAMFGEVYPDPVRVVRV---- 688 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 G S CGGTH+S+T E + E+++ GIRRI A+T Sbjct: 689 GDDCSVEFCGGTHISNTAEAEAFVLTEETAVAKGIRRITALT 730 >gi|296170783|ref|ZP_06852355.1| alanine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894598|gb|EFG74335.1| alanine--tRNA ligase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 901 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 329/927 (35%), Positives = 497/927 (53%), Gaps = 68/927 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F GH +PS+S+I +DP L+F N+GMV F F G P Y T++QK Sbjct: 6 IRKRFLDHFVTAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPPYPTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT + LD Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKREAIELAWTLLTNGVSEGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R++ TVY +D+EA +LW++I+GL A++I R DN+WSM GPCGP SEI++D+GE Sbjct: 121 PDRIWTTVYFDDDEAVRLWQEIAGLPAERIQRRGMEDNYWSMGIPGPCGPSSEIYYDRGE 180 Query: 182 CIP-GGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234 GG P ++E+ RYIEIWNLVFMQ E+ K + IL P+ +IDTGMG+ER+A Sbjct: 181 EFGVGGGPIANED--RYIEIWNLVFMQNERGEGTGKTDFEILGPLPRKNIDTGMGVERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGIL 291 +LQ N Y+ DL + +I Y+ ++ V +RVI DH R+++ LI DG+ Sbjct: 239 FILQGVHNVYETDLLRPVIDLVAARAPRGYDAGRHDDDVRYRVIADHSRTAAILIGDGVT 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + A+LL P++ L+ + MG +YPEL+ I Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLDIEGPIVGDLMATVRDAMGPSYPELVADFGRIRRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L D V + + ++G+ AF L+DT+G P+++ ++ G Sbjct: 359 VAEETAFNRTLVAGSKLFDEVAGTTKAAGAKAISGNDAFTLHDTYGFPIELTLEMAAEAG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D I F + + EQR RA+A + + + G T+F G+D L Sbjct: 419 LQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDEL------ 471 Query: 470 KEDRKVLC-----QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + K+L ++ P+ +T+G + +VE+V D+TP YAE+ Sbjct: 472 SSEAKILGIFVDGKRVPV-VTHGAHP-------------DGAGAHQVELVLDRTPLYAES 517 Query: 525 GGQLGD----TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 GGQ+ D +G G+ R +TDVQK A+ ++VH VE G ++V +D + R Sbjct: 518 GGQIADEGTISGTGAGESARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVVAAVDPEWR 577 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 R + HS TH++H AL +LG + Q GS P LRFD P++ + +E+ N Sbjct: 578 RGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLSEEQRTQVEEVTN 637 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 + + V T E A A GA A+ G Y D VRVV + GG S LCGGTHV Sbjct: 638 QAVQADFEVHTFTEQLEKAKAMGAMAMFGEAYPDEVRVVEI----GGPFSLELCGGTHVH 693 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 ++ +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V RV Sbjct: 694 NSAQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSDEVPARV 753 Query: 761 EEIWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMD 814 + E + + A + +I +V ++ +S + + +L+S+ Sbjct: 754 AGLVERLKAAEKELERARLAGARAAAANAAAGAERIGNVRVVAQRMSAGMTAGDLRSLAG 813 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGR 871 ++ K+ S ++ I++ + SV V + + A DL + A + G GGG+ Sbjct: 814 DIRGKLGSDPAVVALIAEGEGGSVPYAVAANPAAQELGIRANDLIKQLAVTV-DGRGGGK 872 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 P +AQ G + ++ D A+A V S + + Sbjct: 873 PDLAQGSGKDPSRIDAALAAVRSEIAR 899 >gi|302801948|ref|XP_002982730.1| hypothetical protein SELMODRAFT_116848 [Selaginella moellendorffii] gi|300149829|gb|EFJ16483.1| hypothetical protein SELMODRAFT_116848 [Selaginella moellendorffii] Length = 934 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 298/806 (36%), Positives = 450/806 (55%), Gaps = 80/806 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-------- 57 +IR TFL FF GH LLP SSL+P +DPT++ T +GM+ FK IF GQ + Sbjct: 26 AIRRTFLNFFAARGHHLLPGSSLVP-DDPTVLLTIAGMLQFKPIFLGQATTLDSVLLSRA 84 Query: 58 -----YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWD 112 + T QKC+R ND++NVGRT+RHHTFFEMLGNFSFG YFK AI+ AW+ Sbjct: 85 QVPRRFACAVTSQKCLRT----NDIENVGRTSRHHTFFEMLGNFSFGDYFKHDAIRWAWE 140 Query: 113 LLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 L T E+ L R++++VY +D+EA +W+ G+ ++I ++ DNFW+ TGPCGPC Sbjct: 141 LATSEYKLPAARVWVSVYKDDDEALAIWRDHVGIPEERIKKLGEEDNFWASGPTGPCGPC 200 Query: 173 SEIFFDQGECIPGGLPGSSEEGE--RYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 SE++FD G + + G+ R++E +NLVFMQ+ + + + +L + +IDTG+GL Sbjct: 201 SEMYFDFHP--ERGTDDAVDLGDDTRFLEFYNLVFMQYNRNDDGKLELLKQKNIDTGLGL 258 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIA 287 ERMA +LQ+ NNY+ DL +IQ + ++ G+ Y + +VI DH R+ +LI+ Sbjct: 259 ERMARILQKVPNNYETDLIYPIIQRASELAGVNYTAADDRTKTYLKVIGDHSRAVVYLIS 318 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGY-------TEPLMMHLLPALCTEMGSAY-PE 339 DG+ P+N GRGY++RR++RR + RLLG +E + L + M S P+ Sbjct: 319 DGVTPSNIGRGYIVRRLIRRIVRMGRLLGIRGDGEGNSEGTFLPSLAKVVVSMSSNVDPD 378 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--------KDEILNGDVAFKLY 391 + Q I E L E+ RF +TL+RG LL L +L+G F LY Sbjct: 379 VKQNAGRIFEELDKEELRFVQTLERGEKLLSQKLEEAAAACRRDGSAKPVLSGKDVFMLY 438 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-AHS-LGLGSGTTEKIWFSLK 449 DT+G P++I +++ + +D+ F +E QR +++ AH+ + L +G T SL Sbjct: 439 DTYGFPVEITEEVAGENDVQ-VDMAGFETEMEYQRRQSQEAHNVVKLSAGGTAAELTSLV 497 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 E T+F+GY L + V+A++ +G +V E G Sbjct: 498 E----TKFVGYTTLES-----------------------IAEVRALIARGGLVTEVREGD 530 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGIL 565 +VE+V D TPFYAE+GGQ+GD G + G +Q+ DVQK + +H IV++G + Sbjct: 531 EVEIVLDTTPFYAESGGQIGDNGLLVCRGGETDCIVQVKDVQKLGSNLIIHKGIVQQGTM 590 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 ++ ++ RR+ H+ATHLL AL +LGS SQ GS + D LRFD T S+ Sbjct: 591 AVGNNVQALVESSLRRRAQAQHTATHLLQAALKKVLGSETSQAGSLVAFDRLRFDFTLSR 650 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYED 685 + E+ +E VN+ I+ +P+ ++M +A SGA A+ G KY ++VRVV V Sbjct: 651 KMAEEEVVQVEALVNEWISMAVPLEWKVMPLAEAKNSGAIAMFGEKYGEQVRVVDVP--- 707 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 G+ S LCGGTHVS+T EI IV I +G++RIEA+ G H+ ++ L+ + Sbjct: 708 -GI-SKELCGGTHVSNTSEIRGFKIVLVEGIASGVKRIEAVAGDAFIDHIFARENALRQI 765 Query: 746 ASFLKVSQGNVVGRVEEIWEEYRKLQ 771 S LK ++ R+ + +E + L+ Sbjct: 766 CSSLKAKPEDLPARISGLQDELKALK 791 >gi|294786852|ref|ZP_06752106.1| alanine--tRNA ligase [Parascardovia denticolens F0305] gi|315226488|ref|ZP_07868276.1| alanine--tRNA ligase [Parascardovia denticolens DSM 10105] gi|294485685|gb|EFG33319.1| alanine--tRNA ligase [Parascardovia denticolens F0305] gi|315120620|gb|EFT83752.1| alanine--tRNA ligase [Parascardovia denticolens DSM 10105] Length = 903 Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust. Identities = 344/929 (37%), Positives = 511/929 (55%), Gaps = 83/929 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S I F+ +F+K GH ++PS+SLI N PT +FT +GMVPF G++ P + +T+ Sbjct: 3 TSEIAKRFVTYFEKQGHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMTS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+MLGNFS G YFK+ AI AWDLLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSIGDYFKKEAIHYAWDLLTSPQDQGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ +L++T Y +DEEA LWK G+ + + + DNFW+ GP GPC+EI+ D Sbjct: 118 GFEKDKLWVTTYTDDEEARSLWK-TEGMDPEHMQVLGMEDNFWTTGGPGPGGPCTEIYVD 176 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLE 231 +G E P G P +SE RYIEIW+LVF FE N + + L +IDTGMGLE Sbjct: 177 RGPEYGPDGGPIASES--RYIEIWDLVFENFEVDNVKSKTNLHIVGELANKNIDTGMGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 R+A +LQ K N Y+ D +I+ +E+++G KY + + V RV+ DH+RS+ ++ DG Sbjct: 235 RVAYLLQGKQNIYETDEIFPVIEEAERLSGRKYGDDPEDDVRFRVVADHVRSALMIMGDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+NEGRGYVLRR++RR++ ++LG + + HLLP +M +YPEL + + E Sbjct: 295 VRPSNEGRGYVLRRLIRRSIRAMKMLGVEQEVFPHLLPVSEAQMKLSYPELESSFAEVSE 354 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--------EILNGDVAFKLYDTHGLPLDIM 401 T E+ F +TLD+G +LD +S KD +++G AF L+DT+G P+++ Sbjct: 355 TAFGEEAAFRRTLDQGSTILDVAISQAKKDASEKGQEQPVVSGKEAFTLHDTYGFPIELT 414 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 +I +G+ G+D SF + + EQ+ RARA +L K+++ + YD Sbjct: 415 TEIAREQGV-GVDDRSFRELMAEQKQRARADAL--------------KKRHNVDLSV-YD 458 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 + +K L + PI+ T + +++ I ++ V A + VEV+ D Sbjct: 459 ---------DAKKALAK--PIEFTGYKEFSSRGTVLAIIDEETGSVRSASAPATVEVILD 507 Query: 517 QTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +TPFYAE GGQ+ D G D G L++ DVQK + ++V H + G L + +I Sbjct: 508 RTPFYAEQGGQMADYGEIESDQGAVLEVDDVQKPVKDLYVQHCRLTEGSLTVGDQVSSSI 567 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R ++ H+ATH+LH + +LG +Q+GS + PD LRFD SK +T +L I Sbjct: 568 DVDRRIGMTHAHTATHVLHKVVREVLGEKATQSGSVVDPDRLRFDFHWSKALTQDQLGQI 627 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E VN I +L V + M +DA+ GA L G KY D VRVV++ DG S LCG Sbjct: 628 EARVNARIRDDLEVSWKNMPIDDALELGAMHLFGDKYGDIVRVVTIG-NDG--WSRELCG 684 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTH S TG I ++SESS+ G+RRIEA+ G ++ + Q + + LA+ L Sbjct: 685 GTHASRTGTIGSFTLISESSVGTGLRRIEALVGAKSYEYNHRQHQVINRLANGLNARADE 744 Query: 756 VVGRV----EEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDS 806 V RV E + E KL I+ +R++ + L S AD+ + S Sbjct: 745 VETRVLGLEESLKEAQAKLASIY-ERQISAMIPALVDQAKSGSPDADLLLAIRNVGSFGS 803 Query: 807 KEL--KSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSA 860 E K+V D + + ++ ++ L G+S E V+ V T + + A DL R + Sbjct: 804 AEALRKAVTDTRAQLGEDKAAVVCLAGVSSETGKPVIFVATNEAARKAGIKAGDLVRSAF 863 Query: 861 KVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +VL GGGGGG+P AQ GG + ++ D A+ Sbjct: 864 QVL-GGGGGGKPDFAQGGGQDASRLDAAL 891 >gi|317482215|ref|ZP_07941237.1| alanyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA] gi|316916353|gb|EFV37753.1| alanyl-tRNA synthetase [Bifidobacterium sp. 12_1_47BFAA] Length = 893 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 338/920 (36%), Positives = 507/920 (55%), Gaps = 75/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + + + Sbjct: 4 ADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRMASN 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT D Sbjct: 63 QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +L++T + +D+EA +W G+ + I ++ DNFW+ GP GPCSEI+ D+ Sbjct: 119 FDPEKLWMTTFTDDDEARSMWIN-EGVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIYVDR 177 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLERM 233 G G G + RYIEIW+LVF +E N + + L +IDTG GLER+ Sbjct: 178 GPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGLERL 236 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ K N Y+ D +I+A+EQ++G+KY N V RV+ DH+RS+ +++DG+ Sbjct: 237 AYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSDGVR 296 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+N GRGYVLRR++RR + R+LG T+P++ L P M ++YPEL + E+ Sbjct: 297 PSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVSESA 356 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E++ F +TL+ G +LD ++ D ++ G+ AFKL+DT+G P+++ ++ + Sbjct: 357 YGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMAAEQ 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSK 467 G+ +D F + + EQ+SRARA +L ++ K+ F+GY Sbjct: 417 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGY------- 468 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526 D++ I I+Q+G+ AV+G VEV+ D+TPFYAEAGG Sbjct: 469 --------------TDMSARAEVI--GIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 512 Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G + D G L++ DVQK + + VH + G L + ID R ++ Sbjct: 513 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIAR 572 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND + Sbjct: 573 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 632 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTHV G+I Sbjct: 633 NLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKI 689 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761 ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 690 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLA 749 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI 820 ++ E R+L ++ + +L +V L +AD N + + V + +DAL+K + Sbjct: 750 KLKESDRRLASMY-ESQLAASVPAL----VADTKNSAAPVKVAVKNVGHFGAVDALRKTV 804 Query: 821 -----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 Q G ++ L G++++ K V + E A DL R +AKVL GGGGG Sbjct: 805 LDVRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGG 863 Query: 870 GRPHMAQSGGPNGNKADQAI 889 G+P AQ GG + +K D+A+ Sbjct: 864 GKPDFAQGGGVDASKIDEAL 883 >gi|23334993|ref|ZP_00120231.1| COG0013: Alanyl-tRNA synthetase [Bifidobacterium longum DJO10A] gi|23465456|ref|NP_696059.1| alanyl-tRNA synthetase [Bifidobacterium longum NCC2705] gi|189439479|ref|YP_001954560.1| alanyl-tRNA synthetase [Bifidobacterium longum DJO10A] gi|227545932|ref|ZP_03975981.1| alanine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|322688960|ref|YP_004208694.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F] gi|322690929|ref|YP_004220499.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM 1217] gi|41018234|sp|Q8G5W9|SYA_BIFLO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|23326108|gb|AAN24695.1| alanyl-tRNA synthetase [Bifidobacterium longum NCC2705] gi|189427914|gb|ACD98062.1| Alanyl-tRNA synthetase [Bifidobacterium longum DJO10A] gi|227213566|gb|EEI81415.1| alanine--tRNA ligase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517003|emb|CBK70619.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum F8] gi|320455785|dbj|BAJ66407.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. longum JCM 1217] gi|320460296|dbj|BAJ70916.1| alanyl-tRNA synthase [Bifidobacterium longum subsp. infantis 157F] Length = 893 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 338/920 (36%), Positives = 508/920 (55%), Gaps = 75/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + + + Sbjct: 4 ADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRMASN 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT D Sbjct: 63 QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +L++T + +D+EA +W G+ + I ++ DNFW+ GP GPCSEI+ D+ Sbjct: 119 FDPEKLWMTTFTDDDEARSMWIN-EGVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIYVDR 177 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLERM 233 G G G + RYIEIW+LVF +E N + + L +IDTG GLER+ Sbjct: 178 GPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGLERL 236 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ K N Y+ D +I+A+EQ++G+KY N V RV+ DH+RS+ +++DG+ Sbjct: 237 AYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSDGVR 296 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+N GRGYVLRR++RR + R+LG T+P++ L P M ++YPEL + E+ Sbjct: 297 PSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVSESA 356 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E++ F +TL+ G +LD ++ D ++ G+ AFKL+DT+G P+++ ++ + Sbjct: 357 YGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMAAEQ 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSK 467 G+ +D F + + EQ+SRARA +L ++ K+ F+GY Sbjct: 417 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGY------- 468 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526 D++ + V I+Q+G+ AV+G VEV+ D+TPFYAEAGG Sbjct: 469 --------------TDMS--ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 512 Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G + D G L++ DVQK + + VH + G L + ID R ++ Sbjct: 513 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIAR 572 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND + Sbjct: 573 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 632 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTHV G+I Sbjct: 633 NLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKI 689 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761 ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 690 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLA 749 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI 820 ++ E R+L ++ + +L +V L +AD N + + V + +DAL+K + Sbjct: 750 KLKESDRRLASMY-ESQLAASVPAL----VADTKNSAAPVKVAVKNVGHFGAVDALRKTV 804 Query: 821 -----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 Q G ++ L G++++ K V + E A DL R +AKVL GGGGG Sbjct: 805 LDVRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGG 863 Query: 870 GRPHMAQSGGPNGNKADQAI 889 G+P AQ GG + +K D+A+ Sbjct: 864 GKPDFAQGGGVDASKIDEAL 883 >gi|189217804|ref|NP_001121342.1| alanyl-tRNA synthetase [Xenopus laevis] gi|171846704|gb|AAI61712.1| LOC100158432 protein [Xenopus laevis] Length = 968 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 308/803 (38%), Positives = 435/803 (54%), Gaps = 86/803 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV-- 61 S IR F++FF+ NGH + SS+ +P +DPTL+F N+GM FK IF P + Sbjct: 7 ASEIRQKFIDFFKDNGHTYVHSSATVPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66 Query: 62 ---TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A +LA DLLTKEF Sbjct: 67 TRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKEF 126 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 +D RLY+T + + D E ++W + GL+ +I+ + DNFW M +TGPCG Sbjct: 127 GIDIERLYVTYFGGNEAAGLEPDLECKQIWLNL-GLAESRILPGSMKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI FD+ GG + + + +EIWNLVF+QF ++ LPK SIDTG Sbjct: 186 PCSEIHFDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRETDGTLKPLPKKSIDTG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278 MGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGDEDVDGIDMAYRVLADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 R+ + +ADG P N GRGYVLRRI+RRA+ YA L ++ L+ + +G+A+ Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASKGFFSTLVDVVVQSLGNAF 361 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + ++++ + E+ +F KTL+RG +LD + LG+ +++ GD A+ LYDT+G P Sbjct: 362 PELKKDPDMVKDIINDEETQFLKTLNRGRRILDRKIQSLGEHKVIPGDTAWLLYDTYGFP 421 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ I RGL +D+ SF EE+R A+ S G G+G Sbjct: 422 VDLTSLIAEERGLT-LDMESF----EEERKAAQLKSQGKGAGDE---------------- 460 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLT--------------NGVSSIVKAIVQQGEIVE 503 DLL + E+ + +P DL + + + VKAI ++ VE Sbjct: 461 ---DLLMLDIYAIEELRSRGLEPTDDLPKYTYTSNAEGVYEFDNLLATVKAIRREKMFVE 517 Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAI 559 EA +GQ+ +V D+T FYAE GGQ D G + + + + T + G +V H Sbjct: 518 EASTGQECGLVLDKTCFYAEQGGQTYDEGYMVKEEESSEDKTEFTVRNTQVRGGYVLHVG 577 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 G L+ + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRF Sbjct: 578 TLYGNLKVGDQVHLYIDEPKRRPIMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRF 636 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRV 678 D T +T+ E++ E+ NDII +N V A A G A+ Y D VRV Sbjct: 637 DFTAKGAMTTQEIRKTEEIANDIIKENKVVYALDCPLATAKAIQGLRAVFDETYPDPVRV 696 Query: 679 VSV--EYED---------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 VS+ ED G V S CGGTH+ ++G IV+E +I GIRRI A+T Sbjct: 697 VSIGIPVEDLLADPSSPAGSVTSVEFCGGTHLKNSGHAGPFIIVTEEAIAKGIRRIVAVT 756 Query: 728 GQRARSHLMGQDEKLKSLASFLK 750 G A+ L QD SL+ K Sbjct: 757 GAEAQKALRRQDAIKVSLSDLEK 779 >gi|227549179|ref|ZP_03979228.1| alanyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291] gi|227078739|gb|EEI16702.1| alanyl-tRNA synthetase [Corynebacterium lipophiloflavum DSM 44291] Length = 888 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 324/902 (35%), Positives = 494/902 (54%), Gaps = 64/902 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64 IR F + F GHE +PS+SLI +DPTL+F N+GMVPFK F GQ+ P + + T++ Sbjct: 6 IRERFTQHFINAGHEPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQTPPFASGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI+ AW LLT + Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIKHAWALLTNPVSEGGYG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD +RL++TVY +D+EA +W+ G+ A++I R+ DNFWSM GPCGPCSEI++D+ Sbjct: 121 LDPQRLWVTVYLDDDEAAGIWENTIGVPAERIQRMGMEDNFWSMGVPGPCGPCSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLERMA 234 G G G + RY+EIWNLVFM+ E K I LPK +IDTGMG+ER+A Sbjct: 181 GPE-HGKEGGPIADDTRYLEIWNLVFMESIRGEGDKKGFEIIGELPKKNIDTGMGVERVA 239 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---VNHRVIVDHLRSSSFLIADGIL 291 +LQ N Y+ DL + +I A+ ++TG +Y N V RVI DH R++ +I DG+ Sbjct: 240 CILQGVDNVYETDLLRPVIDAAIELTGARYNAGNTRDDVRFRVIADHSRTAMMIILDGVT 299 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGY+LRR++RR + ARLLG T P++ + + M ++PE+ + I Sbjct: 300 PSNEGRGYILRRLLRRIVRSARLLGATAPVLEPFMNTIMDTMTPSFPEIADNRERIVRVA 359 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F KTL+ G + + + L G AF+L+DT+G P+D+ ++ G Sbjct: 360 VAEERAFMKTLESGTHRFEEAAASVKAAGAGTLPGAQAFELHDTYGFPIDLTLEMARESG 419 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D+ FN+ + QR RA+A + G ++ + T+F+G+ L Sbjct: 420 LE-VDMDEFNREMALQRERAKADNKAKKQGNLDESLYREWVDSHPTEFVGFSEL------ 472 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 D V+ +V+ GE V E G +VEV+ D TP YAE+GGQ+G Sbjct: 473 AHDGTVI-----------------GLVRDGEKVTEVSQGDEVEVILDVTPMYAESGGQMG 515 Query: 530 DTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +GD + L +TDVQK + +++H A V+ G L + +D R H+ Sbjct: 516 DRGRIVVGDTV-LNVTDVQKVGKKLWIHKATVQNGGLDLGQGVTTEVDSSWRHGARQAHT 574 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHL+H AL +LG Q GS P LRFD +++ ++ +L+ I N + + Sbjct: 575 ATHLIHAALRQVLGPTAVQAGSLNKPGYLRFDFNYTEQLSDEQLREIATITNQAVDADFA 634 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V T + E+A A GA AL G Y D VRVV + GG S LCGGTHV + +I + Sbjct: 635 VNTIETSLEEAKAMGAMALFGENYGDVVRVVEI----GGPFSIELCGGTHVDHSSQIGPV 690 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 ++ ESS+ +G RRIEA +G + + + LA+ LK + R+ ++ + R Sbjct: 691 AVLGESSVGSGARRIEAYSGLESFRYFSREAALASGLAAELKTPTEQLPDRIAQLTDRLR 750 Query: 769 KLQL-IHAKRKLQLNVEDL----SCHKIADVNFMSHIISE-VDSKELKSVMDALQKKI-- 820 + + A R+ QL+ ++A + +S + + + + +L+++ +++++ Sbjct: 751 AAEKELAAMRRQQLSSHTAQYVEQAQQVAKFSLVSVKLPDGLGAGDLRTMASDVRERLGA 810 Query: 821 QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 + G+++L S + K + VT+ ++ A DL +L + G GGG+P +AQ G Sbjct: 811 RPGVVVLAS-SVDGKVPFAVAVTKPAVEAGVKAGDLVKLIGGYV-DGKGGGKPDLAQGSG 868 Query: 880 PN 881 N Sbjct: 869 SN 870 >gi|312132886|ref|YP_004000225.1| alas [Bifidobacterium longum subsp. longum BBMN68] gi|311773857|gb|ADQ03345.1| AlaS [Bifidobacterium longum subsp. longum BBMN68] Length = 893 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 338/920 (36%), Positives = 508/920 (55%), Gaps = 75/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + + + Sbjct: 4 ADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRMASN 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT D Sbjct: 63 QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +L++T + +D+EA +W G+ + I ++ DNFW+ GP GPCSEI+ D+ Sbjct: 119 FDPEKLWMTTFTDDDEARSMWIN-EGVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIYVDR 177 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLERM 233 G G G + RYIEIW+LVF +E N + + L +IDTG GLER+ Sbjct: 178 GPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGLERL 236 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ K N Y+ D +I+A+EQ++G+KY N V RV+ DH+RS+ +++DG+ Sbjct: 237 AYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSDGVR 296 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+N GRGYVLRR++RR + R+LG T+P++ L P M ++YPEL + E+ Sbjct: 297 PSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVSESA 356 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E++ F +TL+ G +LD ++ D ++ G+ AFKL+DT+G P+++ ++ + Sbjct: 357 YGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMAAEQ 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSK 467 G+ +D F + + EQ+SRARA +L ++ K+ F+GY Sbjct: 417 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGY------- 468 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526 D++ + V I+Q+G+ AV+G VEV+ D+TPFYAEAGG Sbjct: 469 --------------TDMS--ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 512 Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G + D G L++ DVQK + + VH + G L + ID R ++ Sbjct: 513 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIAR 572 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND + Sbjct: 573 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 632 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTHV G+I Sbjct: 633 NLAVATKEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKI 689 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761 ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 690 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLA 749 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI 820 ++ E R+L ++ + +L +V L +AD N + + V + +DAL+K + Sbjct: 750 KLKESDRRLASMY-ESQLAASVPAL----VADTKNSAAPVKVAVKNVGHFGAVDALRKTV 804 Query: 821 -----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 Q G ++ L G++++ K V + E A DL R +AKVL GGGGG Sbjct: 805 LDVRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGG 863 Query: 870 GRPHMAQSGGPNGNKADQAI 889 G+P AQ GG + +K D+A+ Sbjct: 864 GKPDFAQGGGVDASKIDEAL 883 >gi|239622020|ref|ZP_04665051.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515211|gb|EEQ55078.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 893 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 338/920 (36%), Positives = 508/920 (55%), Gaps = 75/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + I +L++F K+ H ++PS+SLI N PT +FT +GMVPF G++ P + + + Sbjct: 4 ADIAKRYLDYFAKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKRRMASN 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD----- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI AW+LLT D Sbjct: 63 QKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAWELLTTSQDEGGYG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D +L++T + +D+EA +W G+ + I ++ DNFW+ GP GPCSEI+ D+ Sbjct: 119 FDPEKLWMTTFTDDDEARSMWIN-EGVDPEHIQKMGMEDNFWTTGGPGPGGPCSEIYVDR 177 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLERM 233 G G G + RYIEIW+LVF +E N + + L +IDTG GLER+ Sbjct: 178 GPAF-GKEGGPIADENRYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGLERL 236 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGIL 291 A +LQ K N Y+ D +I+A+EQ++G+KY N V RV+ DH+RS+ +++DG+ Sbjct: 237 AYLLQGKNNIYETDEVFPVIEAAEQLSGLKYGENEDADVRFRVVADHVRSALMIMSDGVR 296 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+N GRGYVLRR++RR + R+LG T+P++ L P M ++YPEL + E+ Sbjct: 297 PSNVGRGYVLRRLLRRTVRSMRMLGVTDPVLPTLFPTSKAAMEASYPELNDTFHEVSESA 356 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCAR 408 E++ F +TL+ G +LD ++ D ++ G+ AFKL+DT+G P+++ ++ + Sbjct: 357 YGEEDAFRRTLETGTTILDVAVNKAKSDSAEPVVAGEDAFKLHDTYGFPIELTLEMAAEQ 416 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRGSK 467 G+ +D F + + EQ+SRARA +L ++ K+ F+GY Sbjct: 417 GVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGY------- 468 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGG 526 D++ + V I+Q+G+ AV+G VEV+ D+TPFYAEAGG Sbjct: 469 --------------TDMS--ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGG 512 Query: 527 QLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G + D G L++ DVQK + + VH + G L + ID R ++ Sbjct: 513 QLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAITR 572 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E+ VND + Sbjct: 573 SHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRD 632 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTHV G+I Sbjct: 633 NLAVTTKEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKI 689 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE---- 761 ++ I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 690 GMVNILSEASIGSGVRRVDAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLA 749 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI 820 ++ E R+L ++ + +L +V L +AD N + + V + +DAL+K + Sbjct: 750 KLKESDRRLASMY-ESQLAASVPAL----VADTKNSAAPVKVAVKNVGHFGAVDALRKTV 804 Query: 821 -----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 Q G ++ L G++++ K V + E A DL R +AKVL GGGGG Sbjct: 805 LDVRAQLGEDAPVVVALAGVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGG 863 Query: 870 GRPHMAQSGGPNGNKADQAI 889 G+P AQ GG + +K D+A+ Sbjct: 864 GKPDFAQGGGVDASKIDEAL 883 >gi|225683316|gb|EEH21600.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb03] Length = 962 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 344/973 (35%), Positives = 494/973 (50%), Gaps = 111/973 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R FL+FF+ NGH +PSSS++P +DPTL+F N+GM +K IF G +P + Sbjct: 17 VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD Sbjct: 77 HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + + D EA LW + G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG S +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 196 EIHYDR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRPLPNKHVDTGMGY 251 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281 ER+ ++LQ KT+NYD D+F L + ++TG K+ ++ +RV+ DH+R+ Sbjct: 252 ERLVSILQNKTSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRT 311 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG +P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 312 LTFAISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPE 371 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGL 396 + + + E L E+ F KTLDRG L + G D + DV ++LYDT G Sbjct: 372 IKRKATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADV-WRLYDTFGF 430 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + RGL ID N EE R RA+ S G G T + + ++ + G + Sbjct: 431 PVDLTQLMAEERGLK-ID----NGEFEEARLRAKEASKGQGKLTKDVVKLTVHD-LGLLE 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA---VSGQKVEV 513 + D+ + K R ++S +KAI + V+ + G++ + Sbjct: 485 TMD-DVPKTDDSAKFGR------------GNITSQIKAIYHNKKFVDSSKGIPEGEQFGI 531 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG I DG L + DVQ G +H ++ G S++ Sbjct: 532 ILDRTNFYAEQGGQEYDTGKIIIDGKAELAVEDVQVYG-GYVLHTGFMKYGSFNVNDSVI 590 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H ++ ++L Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 650 Query: 633 KSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYED- 685 + IE D I QN V V + RE +G A+ G Y D VRVVS VE E+ Sbjct: 651 EEIERISTDYIRQNCAVYGKDVPLSIARE---ITGVRAVFGETYPDPVRVVSVGVELEEI 707 Query: 686 -GGVH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------ 731 VH S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 708 LKDVHDPRWKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRI 767 Query: 732 ---------RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQL 781 R M K + A L+V + E + K IH K + Q Sbjct: 768 AKEFGERLKRFEKMELGPKKEMEAKLLQVDLNQLTISSVEKAQFREKFTQIHKKVLEGQK 827 Query: 782 NVEDLSCHKIADV----------NFMSHIISEVD-SKELKSVMDAL---QKKIQSGIIML 827 + L K D N H++ ++ S K+V D+L + K+Q + + Sbjct: 828 AAQKLESKKALDAIMGYFQAPENNDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYV 887 Query: 828 VGISKEKKASVL-IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 KE V V E+L + + D A A V+GG GG P ++ G + K Sbjct: 888 FAADKEAGKIVHGCHVAENLSQQGASPNDWANSVANVVGGRAGGKGP-ISIGNGTDAEKL 946 Query: 886 DQAIAGVASFLKK 898 D AI +L+K Sbjct: 947 DDAIKAATEYLEK 959 >gi|46108048|ref|XP_381082.1| hypothetical protein FG00906.1 [Gibberella zeae PH-1] Length = 957 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 334/966 (34%), Positives = 495/966 (51%), Gaps = 97/966 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF---TGQEKPV--Y 58 + +R TF E+F++ GH ++PSSS++P NDPTL+FTN+GM FK IF G+ P+ Sbjct: 10 AARVRKTFFEYFEQRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVGKTDPMASL 69 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 +A QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W+LLTK + Sbjct: 70 KAAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWELLTKVY 129 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD RLY+T ++ DE EA +LW + G+ D I+ DNFW M + GPCG Sbjct: 130 GLDPSRLYVTYFEGDEKLKLEPDLEAKELWISV-GVPEDHILPGNMKDNFWEMGDQGPCG 188 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG SS + +E+WN VFMQ+++Q LP IDTG Sbjct: 189 PCSEIHYDK----VGGRNASSLVNMDDPMVVEVWNNVFMQYDRQKDGSLKSLPAKHIDTG 244 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDH 278 MG ER+ + LQ+ +NY D F L Q ++VTG KY ++ +RV+ DH Sbjct: 245 MGYERLVSALQDTVSNYATDCFTPLFQKIQEVTGARPYTDKYGKDDADGIDTAYRVVADH 304 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336 +R+ SF IADG +P N+GRGYV+RR++RR + YAR + +LPAL +MG Sbjct: 305 IRTLSFSIADGAVPNNDGRGYVIRRVLRRGVRYARKYFNADIGAFFSKILPALVDQMGEQ 364 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTH 394 +PEL++ + I+E L E+ F KTLDRG + + K+ + L GDV ++LYDT Sbjct: 365 FPELVKKQQDIKEILDEEEVAFAKTLDRGEAQFEKYAAEATKNGAKKLQGDVVWRLYDTF 424 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYG 453 G P+D+ + + R L ID A ++ R ++A + + + S EK Sbjct: 425 GFPVDLTRLMAEERNLE-IDDEEVKAAQDKAREASKAVKESVQTFAKLNVHQISELEKDL 483 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 + D +KF+ D Q L +S +K+ ++ E+ G + Sbjct: 484 KVERTNDD----AKFLLGDSNAQVQ-----LIYDGTSFLKST---KDVPEKTALG----L 527 Query: 514 VFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE+GGQ+ DTG I D ++ DVQ G +H+ +E G L + ++ Sbjct: 528 LIDKTNFYAESGGQVADTGRIVIDDVAEFKVLDVQNYG-GYVLHNGYIEYGTLSSGDKVI 586 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NHS TH+L+H+L +LG V+Q GS + D LRFD +H + EL Sbjct: 587 CEYDELRRSPIRNNHSGTHILNHSLREVLGDEVNQKGSLVDSDKLRFDFSHKTGVKIEEL 646 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---------- 681 K IE+ N+ I + + ++ ++ E A G A+ G Y D VRVVS+ Sbjct: 647 KKIEEMSNEYIRRGQKIYSKEVDLEKARQIEGCRAVFGETYPDPVRVVSIGKDIDEMLAD 706 Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 + + +S CGGTHV TG I L ++ ES I GIRRI A TG+ A DE Sbjct: 707 PKKPEWRQYSVEFCGGTHVEQTGLIKDLILIEESGIAKGIRRIIAYTGEAAHQVQREADE 766 Query: 741 KLKSLASF-----------------LKVSQGNVVGRVEEIW-EEYRKLQ-LIHAKRKLQL 781 K + + +++SQ + ++ + + Y+K+ + A++K + Sbjct: 767 FSKKIDALDQLPLGPEKEAQMKAVSVELSQLTISTLTKDDFNKRYQKINAAVTAEQKKRQ 826 Query: 782 NVEDLSC----HKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 E + K D N F+ + SK L V+ Q K + + + G SK Sbjct: 827 KAESKTALDTVKKHFDTNKDAKWFVGRLPVGATSKALMEVVKHYQGKDKEKTVYVFGGSK 886 Query: 833 EKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E+ A + V T A A ++V+GG GG P Q G D+ + Sbjct: 887 EEGAVAHGVYVGTHLASQGVTAEQWAASVSEVIGGRSGGKEP-TRQGQGTKPENLDEGVE 945 Query: 891 GVASFL 896 +L Sbjct: 946 TATKWL 951 >gi|119025718|ref|YP_909563.1| alanyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703] gi|154487461|ref|ZP_02028868.1| hypothetical protein BIFADO_01314 [Bifidobacterium adolescentis L2-32] gi|205829991|sp|A1A198|SYA_BIFAA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118765302|dbj|BAF39481.1| alanyl-tRNA synthetase [Bifidobacterium adolescentis ATCC 15703] gi|154083979|gb|EDN83024.1| hypothetical protein BIFADO_01314 [Bifidobacterium adolescentis L2-32] Length = 892 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 336/926 (36%), Positives = 506/926 (54%), Gaps = 78/926 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S I FL++F+++ H ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 3 TSEIAKRFLDYFEQHDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKHRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T + +DEEA +WK G+ + I + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWMTTFTDDEEARSMWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230 +G + GG P + E RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 177 RGPKYGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+++++G Y + V R++ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG TEP+M LLP M +YPEL + Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTEPVMPTLLPTSKAAMEPSYPELNDTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 E E++ F +TL+ G + D ++ G ++++G+ AFKL+DT+G P++I ++ Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDMAVTKAKQGGSDLVSGEDAFKLHDTYGFPIEITLEMAA 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ +D F + + EQ+SRARA +L + S+ + + T D L G Sbjct: 414 DQGVK-VDEAKFRELMAEQKSRARADALK----KRHNVDLSVYDDFKKTLLQPIDFL-GY 467 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAG 525 M KVL I+Q+G+ AV+G +EV+ D+TPFYA+AG Sbjct: 468 TDMSARAKVL-----------------GIMQEGKGSVPAVTGPANIEVILDRTPFYAQAG 510 Query: 526 GQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GQL D G + D G L++ DVQK + + VH + G L + ID + R ++ Sbjct: 511 GQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLERRGAIA 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 +H+ATH++H AL LG +Q GS P+ LRFD S + + ++E VN+ + Sbjct: 571 RSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNAVEARVNEKLR 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTH+ G+ Sbjct: 631 ENLAVTTQEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHIDHVGK 687 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE--- 761 I + I+SE+SI +G+RR++A+ GQ A + + L+ + + RV Sbjct: 688 IGAINIMSEASIGSGVRRVDAVVGQGAYEFNAREHALVSQLSDMVNARPDELAERVNMLL 747 Query: 762 -EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MDALQK 818 ++ E R+L ++ + +L +V L A S +V K + DAL+K Sbjct: 748 AKLKESDRRLAAMY-ESQLAASVPTLVAEAKA-----SSAPVKVAKKNVGHFGSFDALRK 801 Query: 819 KI-----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGG 867 + Q G ++ L G++++ K V + E + A DL R ++KVL GGG Sbjct: 802 TVLDVRGQLGEDAPVVVALAGMNEDGKPMVAVATNEAARKQGIKAGDLVRGASKVL-GGG 860 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVA 893 GGG+P AQ GG + K D+A+ +A Sbjct: 861 GGGKPDFAQGGGADATKIDEALEALA 886 >gi|239980567|ref|ZP_04703091.1| alanyl-tRNA synthetase [Streptomyces albus J1074] gi|291452426|ref|ZP_06591816.1| alanyl-tRNA synthetase [Streptomyces albus J1074] gi|291355375|gb|EFE82277.1| alanyl-tRNA synthetase [Streptomyces albus J1074] Length = 740 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 292/772 (37%), Positives = 423/772 (54%), Gaps = 53/772 (6%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + IR+ FL+ F GH +PS+ L P DPTL+F N+GMVPFK TG+ + T Sbjct: 2 RTADIRSRFLDHFTARGHTPVPSAPL-PTPDPTLLFVNAGMVPFKPYLTGEVPAPWPRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKCVR D++ VGRT RH +FF+M GNFSFG YFKE AI LAW+L T Sbjct: 61 SVQKCVRT----LDIEEVGRTTRHGSFFQMAGNFSFGDYFKEEAIALAWELSTTPVADGG 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 + LD R+++TV+ D EA LW++ +GL +I+ DNFWSM GPCGP SE+++ Sbjct: 117 YGLDPARIWVTVHHTDTEARALWRRTAGLPDARIVDRGDEDNFWSMGVPGPCGPSSELYY 176 Query: 178 DQGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGL 230 D+G P G P E+ R++E WNLVFMQ E+ K IL P +IDTG+GL Sbjct: 177 DRGPAFGPEGGPAVDED--RFMEFWNLVFMQDERGEGHGKSGYPILGELPHRNIDTGLGL 234 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288 ERMAT+LQ+K N Y+ID + ++ A+ ++TG +Y + V RV+ DH+R++ L+AD Sbjct: 235 ERMATLLQDKPNLYEIDETRPVLDAAAELTGTRYGSDAAADVRLRVVADHVRTALMLLAD 294 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRR++RRA+ R LGY +P + LLP M YPE+ ++ I Sbjct: 295 GVSPTNEGRGYVLRRMLRRAVRSVRQLGYPDPALPALLPVARDLMACGYPEVAESFPRIA 354 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 E +E+E F TL +G +LD ++ + + L G AF+L+DT+G P+D+ ++ Sbjct: 355 EQAYAEEEAFRATLQQGTTVLDTAVAKVRAEGGTALPGAQAFQLHDTYGFPIDLTLEMAA 414 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT--EKIWFSLKEKYGATQFIGYDLLR 464 +G+ +D F +E+QR RARA + SG T ++ + G T+++ ++ L Sbjct: 415 EQGVE-VDRAGFTALMEDQRERARADARARKSGGTGDTSALRAVLDASGPTEWLAWEKLT 473 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + V+A++ + A +GQ VV D+TPFYAE+ Sbjct: 474 -----------------------TRATVRAVLGAEGPLPVATAGQLATVVLDRTPFYAES 510 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ D G G + ++ DVQ+ G+ VH V G L + T+D + R Sbjct: 511 GGQAADAGHLTGASVEAEVVDVQRPLPGLVVHRVRVLAGELAPGDEVEATVDPEWRLGAR 570 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HS TH+LH AL +LG Q+GS P LR D +T A +E+ N + Sbjct: 571 QAHSGTHVLHAALRQVLGPAALQSGSYNRPGHLRLDFPWRGALTPAARSEVEEAANQALR 630 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 ++LPV R M +A GA AL Y + VRVV + GG S LCGGTHV+ T + Sbjct: 631 RDLPVGVRWMPLAEARELGALALFDETYGEEVRVVEI----GGPWSRELCGGTHVAHTSQ 686 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 I ++ + E+S+ AG+RR+EA G +L + + LA L + + Sbjct: 687 IGVIALTGEASVGAGMRRLEAAVGIEGFGYLARERDLAAQLAQQLGAPRAEL 738 >gi|213648094|ref|ZP_03378147.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 465 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 249/471 (52%), Positives = 324/471 (68%), Gaps = 20/471 (4%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA EL + + +E+ L+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIEVMGSAGEELKRQQAQVEQVLK 361 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 362 TEEEQFARTLERGLALLDEELAKLQGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 419 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLL 463 +D F A+EEQR RAR S G G+ I A++F GYD L Sbjct: 420 VDEAGFEAAMEEQRRRAREAS-GFGADYNAMIRVD-----SASEFKGYDHL 464 >gi|169603389|ref|XP_001795116.1| hypothetical protein SNOG_04704 [Phaeosphaeria nodorum SN15] gi|160706385|gb|EAT88464.2| hypothetical protein SNOG_04704 [Phaeosphaeria nodorum SN15] Length = 960 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 292/768 (38%), Positives = 419/768 (54%), Gaps = 65/768 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAV 61 +R TFL++F+KNGH +PSSS++P +DPTL+FTN+GM +K+IF G P + Sbjct: 15 VRQTFLDYFKKNGHSFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFASLKRA 74 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI W+L+TK + +D Sbjct: 75 ANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELMTKVYGID 134 Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RLY+T + + D EA +LWK +G+ D I+ DNFW M + GPCGPCSE+ Sbjct: 135 PNRLYVTYFEGADGLEPDLEAKELWKS-AGVPEDHILPGDMKDNFWEMGDQGPCGPCSEV 193 Query: 176 FFDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D E + G +S+ + IEIWN VFMQ+ ++ + LP IDTGMG E Sbjct: 194 HYDLREPVDGKYRNASDLVNKDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTGMGFE 253 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRSS 282 R+ +VLQ+K +NYD D+F L + + +TG + Y G + I +RV+ DH R Sbjct: 254 RLVSVLQKKMSNYDTDVFTPLFKRIQDITGARPYNGKFGKEDPDGIDTAYRVVADHTRMM 313 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPEL 340 SF IADG +P N GRGYV+RR++RR YAR E ++P L +MG +PE+ Sbjct: 314 SFAIADGGVPNNVGRGYVVRRVLRRGARYARNYFGVEIGNFFSKIIPTLVEQMGDMFPEI 373 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398 + + I E L E++ F K+LDRG + ++ K L GD ++LYDT+G P+ Sbjct: 374 KKKQQDIIEILDEEEKAFAKSLDRGETIFKKYVAKAQKAGSNDLPGDDVWRLYDTYGFPV 433 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + + GL D + +EE + +AR S G + + F + + Sbjct: 434 DLTKLMAEENGLNIND-----KEVEEAQEKAREASKGDKAAAGVVVKFDVHDLAALDSMD 488 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEVVF 515 D+ + K R+ +++ +KAI + ++ E G++ V+ Sbjct: 489 --DVPKTDDSFKYGRE------------NITTTIKAIYHNKKFLKSTSEVPEGEQFGVLL 534 Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQ DTG + DG + + +VQ A G +H ++ G L+ ++ Sbjct: 535 DKTNFYAEQGGQEYDTGRLLIDGEAEISVDNVQVYA-GYVLHTGYLKYGELKVGSEVIAE 593 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 D R + NH+ TH+L++AL LG+ V Q GS + P+ LRFD +H +T AELK Sbjct: 594 FDELRRNPIRNNHTGTHVLNYALRETLGNEVDQKGSLVAPEKLRFDFSHKAGLTDAELKK 653 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS-----------VE 682 +ED +D I QN V + + A G A+ G Y D VRVVS V+ Sbjct: 654 VEDISSDYIRQNAEVYAKDVPLAQAKEIRGLRAVFGETYPDPVRVVSVGVPIEDLLADVK 713 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 E S CGGTHV TG+I L I+ ES I GIRR EA QR Sbjct: 714 NEKWDKLSIEFCGGTHVLKTGDIKELVILEESGIAKGIRRQEAYNVQR 761 >gi|187250451|ref|YP_001874933.1| alanyl-tRNA synthetase [Elusimicrobium minutum Pei191] gi|205830087|sp|B2KAQ0|SYA_ELUMP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|186970611|gb|ACC97596.1| Alanyl-tRNA synthetase [Elusimicrobium minutum Pei191] Length = 868 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 321/900 (35%), Positives = 500/900 (55%), Gaps = 82/900 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +FL FF+ G ++ SSSLIP DPTL+FT++GMV FK F G +K +++AVT QK Sbjct: 6 IRASFLNFFKSKGCTVVASSSLIPQADPTLLFTSAGMVQFKANFLGLDKSLHRAVT-CQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR D+D+VG TNRH TFFEMLGNFSFG YFKE+AI AW+ LT+ + +LY Sbjct: 65 CVRT----TDIDSVGFTNRHLTFFEMLGNFSFGDYFKEQAINWAWEYLTQTLQIPAEKLY 120 Query: 127 ITVY-----DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +++Y + D EA+ W + L +KI + DNFW+M TGPCGPCSEI++D G+ Sbjct: 121 VSIYKGGIAERDNEAYNFW--LKHLPKEKIFELGEKDNFWTMGPTGPCGPCSEIYYDFGD 178 Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 C + G R++EIWN+VF QF++++ L + +IDTGMGLER+ +Q Sbjct: 179 KGCKNKNCNIECDCG-RFVEIWNIVFTQFDRKDDGSIVPLSQKNIDTGMGLERLVMAMQN 237 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGN---NIVNHRVIVDHLRSSSFLIADGILPANEG 296 + ++ DLF I ++++ +K EG I R++ DH+RSS FLI++GILP+NEG Sbjct: 238 VQSPFETDLFTPTINEAKKL--LKIEGKIKEEISTLRIVSDHIRSSVFLISEGILPSNEG 295 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGY+LRR++RRA+ Y +L G P + L+ + G YPE+ K I +++E+E Sbjct: 296 RGYILRRLIRRALRYGKLAGVKGPFLHLLVSVIDLHFGEIYPEIRNNKNYISSVIKTEEE 355 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 F KTL+ G L+ ++ K ++G+ AF LY+T G P+++ ++I A+GLA +D Sbjct: 356 AFFKTLENGEERLEDIIKKSKK--TISGENAFYLYETFGFPVELTKEIALAKGLA-LDEE 412 Query: 417 SFNQALEEQRSRARAHSLGLGSG---TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 SF +A +E R ++R+++ +KI SLK F+GY+ ++ Sbjct: 413 SFEKAKKEAREKSRSYADEFSKEKLVVLQKIENSLK-----NTFVGYEQIQTK------- 460 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S ++ + + E V+E +SG V D+TPFYA GGQ+GD G Sbjct: 461 ---------------SKVLIVLNDKFEQVKE-LSGPGY-AVLDKTPFYATGGGQMGDRGA 503 Query: 534 -AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + DG L ++ +K I + HA+ G+L+ + + ID NR++ + NH+A HL Sbjct: 504 FSWKDGQAL-VSTAEKPLSNIIL-HAVEVSGVLKEGSEIEVKIDPVNRKKTAANHTAVHL 561 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 ++ AL ++G V Q GS ++ D RFD T TS +L + + N+ + + PV Sbjct: 562 INEALRQVIGESVHQAGSFVSADVFRFDYTAPHAPTSEQLARVFEMANNAVIRAHPVNCE 621 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEY---EDGGVHSSALCGGTHVSSTGEIMLLY 709 I EDA GA L+G +Y D R V V E +S LCGGTHV++T EI+ + Sbjct: 622 IRPLEDAKKLGAVTLVGEQYADPARFVMVGANFNEPSLKYSLELCGGTHVNNTSEIITVI 681 Query: 710 IVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR- 768 ++ E ++ AG+RRIE + G A +L L ++A L+ S V RV + E+ + Sbjct: 682 LIKEGALSAGVRRIEGVAGIAAIDYLKENTHALSAMAKTLETSLKEVPARVNSVLEDLKA 741 Query: 769 -KLQLIHAKRKL--------QLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKK 819 K ++ ++KL Q+ + L+ KI +S + KEL+++ D+L +K Sbjct: 742 AKKEIASLRQKLLTGGSGGTQVKEDVLNGKKI-----ISMKAEGANPKELRTLADSLSQK 796 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSG 878 + +I++ + ++++ VV + +A LA+ L+ K+ G GG+ AQ G Sbjct: 797 HKDAVIVIAVDNGDRRS---FVVKKAEGSNTDACTLAKGLAGKM--EGSAGGKADFAQGG 851 >gi|315604258|ref|ZP_07879324.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313964|gb|EFU62015.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] Length = 901 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 296/877 (33%), Positives = 471/877 (53%), Gaps = 69/877 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IRT +L++F GH + PS SLI +P+++FT +GMVPF G E + T+ Sbjct: 3 TSEIRTRWLDYFASKGHHVAPSVSLI-SPEPSILFTVAGMVPFIPYILGTESAPWPRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKC+R ND+DNVG+T RH TFF+M GNFSFG YFKE AI AW+LLT + Sbjct: 62 VQKCIRT----NDIDNVGKTTRHGTFFQMNGNFSFGDYFKEGAIDYAWELLTTPQARGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RL++T++++DE +F W K G+ +++ R+ + WS + GP G C EI +D Sbjct: 118 GLDGDRLWMTIWEKDEVSFNHWTKTIGVDPERVQRLPFEEISWSTGQPGPAGACCEIHYD 177 Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-----LPKMSIDTGMGLER 232 +G P G P G+R++EIWNLVF +F + + R L K +IDTG GLER Sbjct: 178 RGPAYGPDGGPIVDVAGDRFLEIWNLVFDEFVRGEGEGRDFELVGTLDKTAIDTGAGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG-----------NNIVNHRVIVDHLRS 281 +A ++Q+K N Y+ID +I+A+++++G Y ++ V RV+ DH+RS Sbjct: 238 LAFIMQDKPNMYEIDEVFPVIEAAQEMSGKTYGLGAAGPNAGGAYDDDVRMRVVADHVRS 297 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LI+DG+ P N+GRGYVLRR++RRA+ RLLG + + LL A M +YPEL Sbjct: 298 ALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVEDAALPTLLTASKNVMSLSYPELD 357 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGLPL 398 I++ +E++ F +TL G +LD ++ + +++G AF L+DT+G P+ Sbjct: 358 SNWETIQDVAYAEEDAFRRTLSAGTTILDAAVASAKETTGAPVISGASAFSLHDTYGFPI 417 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY--GATQ 456 D+ ++ +G+A +D F + EQ+ RARA + +G T+ F EK G + Sbjct: 418 DLTLEMAAEQGVA-VDEEGFRSLMAEQKERARADARSKKTGHTDVRVFHEIEKQMGGGST 476 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 F+GY + V+A++ G A + +VEV+ D Sbjct: 477 FLGY-----------------------TEEAADATVQALLVDGASAPAASAPAEVEVILD 513 Query: 517 QTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +TPFYAE GGQL D G + G +++ DVQ G+ VH + G + I Sbjct: 514 RTPFYAEMGGQLADHGTIRLAGGGVVEVHDVQAPIRGLSVHRGTLTEGTMSVGEKAYAQI 573 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R ++ H+ATH+++ L +++ +Q GS +P LRFD HS + +++L I Sbjct: 574 DGARRLAIARAHTATHMVYAGLRSVVSKDATQAGSENSPSRLRFDFRHSSAVDASQLGDI 633 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E VN+ +A++L V T M+ ++A A GA AL G KY RVRVV++ G LCG Sbjct: 634 EALVNEKLAEDLTVTTEEMSLDEAKAQGAIALFGEKYGSRVRVVTI----GDGFDRELCG 689 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV +TG I + ++ E SI +G+RRI+A+ G A + + L+ + Sbjct: 690 GTHVPTTGHIGRITLLGEGSIGSGVRRIDALVGDGAYEFQAKEHALVAQLSHLVGGRAEE 749 Query: 756 VVGRVEEIWEEYR----KLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVDSKE-L 809 + R+E + + R +L+ + ++ L E S + VN + ++ + S + L Sbjct: 750 LPERIENLLAKLRDSEKELEKVRTEQALSRGSELAASARAVGAVNLVGAVVGAMPSADAL 809 Query: 810 KSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTE 844 +++ ++ ++ + G ++ +G K S+++ E Sbjct: 810 RTLALDVRDRLGNERGAVVALGGIVAGKPSLVVATNE 846 >gi|254821812|ref|ZP_05226813.1| alanyl-tRNA synthetase [Mycobacterium intracellulare ATCC 13950] Length = 904 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 336/935 (35%), Positives = 499/935 (53%), Gaps = 92/935 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F G P Y T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGARTPEYPTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK RAI+LAW LLT + LD Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRRAIELAWTLLTNSVEQGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 R++ TVY +D+EA +LWK+I+GL ++I R DN+WSM GPCGP SEI++D+G Sbjct: 121 PERIWATVYFDDDEAVQLWKEIAGLPDERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180 Query: 182 --CIPGGLPGSSEEGERYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERM 233 + GG P ++E+ RYIEIWNLVFMQ E + +E F LP+ +IDTGMG+ER+ Sbjct: 181 EFGVEGG-PIANED--RYIEIWNLVFMQNERGEGTGKEDFEILGPLPRKNIDTGMGVERV 237 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGN--NIVNHRVIVDHLRSSSFLI 286 A +LQ N Y+ DL + +I A Y EGN + V +RVI DH R+++ LI Sbjct: 238 AFILQGVHNVYETDLLRPVIDAVAARAPRGYGLSGPEGNHDDDVRYRVIADHSRTAAILI 297 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 DG+ P N+GRGYVLRR++RR + A+LL P++ L+ + MG +YPEL+ Sbjct: 298 GDGVTPGNDGRGYVLRRLLRRVIRSAKLLDIEGPIVGDLMATVRDAMGPSYPELVADFDR 357 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I +E+ F +TL G L D V + + ++G AF L+DT+G P+++ ++ Sbjct: 358 IRRIAVAEETAFNRTLAAGSKLFDEVAGTTKASGAKAISGSDAFTLHDTYGFPIELTLEM 417 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 GL +D + F + + EQR RA+A + + + G T+F G+D L Sbjct: 418 ASEAGLQ-VDEVGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGPTEFTGFDEL- 475 Query: 465 GSKFMKEDRKVLC-----QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + K+L ++ P+ +T+G + +VE+V D+TP Sbjct: 476 -----TSEAKLLGIFVDGKRVPV-VTHGTEGV-----------------DRVELVLDRTP 512 Query: 520 FYAEAGGQLGDTGCAIGDGI----RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 YAEAGGQ+ D G G G R +TDVQK A+ ++VH VE G +++ + Sbjct: 513 LYAEAGGQIADEGTISGTGASGSARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAV 572 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D Q RR + HS TH++H AL +LG + Q GS P LRFD ++ + I Sbjct: 573 DPQWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALSDEQRTQI 632 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E+ N + + V T E A A GA A+ G +Y D VRVV + GG S LCG Sbjct: 633 EEVTNQAVQADFEVHTFTEQLEKAKAMGAIAMFGERYPDEVRVVEI----GGPFSLELCG 688 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTHV ++ +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV Sbjct: 689 GTHVHNSAQIGPVTILGESSVGSGVRRVEAYVGLESFRHLAKERALMAGLASSLKVPSDE 748 Query: 756 VVGRVEEIWEEYRKLQLIHAKRKLQ----------LNVEDLSCHKIADVNFMSH-IISEV 804 V RV + E +L A+++L+ +I +V ++ + + Sbjct: 749 VPARVANLVE-----RLKAAEKELERARLAGAKAAATDAAAGAERIGNVRVVAQRMTGGM 803 Query: 805 DSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLS 859 + +L+S++ ++ K+ ++ I+ + SV V +DL R N + + +L+ Sbjct: 804 TAGDLRSLVGDIRGKLGGDPAVVALIADGEGGSVPYAVAANPAAQDLGLRANDL-VKKLA 862 Query: 860 AKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 A V G GGG+ +AQ G + D A+A + S Sbjct: 863 AAV--DGRGGGKADLAQGSGKDPTGIDAALAAIRS 895 >gi|240170724|ref|ZP_04749383.1| alanyl-tRNA synthetase [Mycobacterium kansasii ATCC 12478] Length = 904 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 338/925 (36%), Positives = 499/925 (53%), Gaps = 72/925 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPYPTATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT + LD Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWSLLTNGVAAGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 RL+ TVY +D+EA LW+ ++GL ++I R DN+WSM GPCGP SEI++D+G Sbjct: 121 PERLWATVYLDDDEAAGLWQDVAGLPPERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234 + P G P +E+ RY+E+WNLVFMQ E+ K++ IL P+ +IDTGMG+ER+A Sbjct: 181 DYGPEGGPIVNED--RYLEVWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMGVERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN---IVNHRVIVDHLRSSSFLIADGIL 291 VLQ+ N Y+ DL + ++ A V Y+ N V +R+I DH R+++ LI DG+ Sbjct: 239 LVLQDVHNVYETDLLRPVVDAVALVAARPYDAGNHADDVRYRIIADHSRTAAILIGDGVS 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + A+LL P++ L+ + MG +YPEL+ I Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLNIDTPIVGDLMATVRDAMGPSYPELVSDFDRINRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L D V + +++G AF L+DT+G P+++ ++ G Sbjct: 359 VAEETAFNRTLASGSRLFDEVAGTTKAKGATVVSGSDAFTLHDTYGFPIELTLEMAAESG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D F + + EQR RA+A + T+ + G T+F G+D L Sbjct: 419 LR-VDEAGFRELMAEQRRRAKADAAARKHAHTDLTAYRELVDAGPTEFTGFDEL------ 471 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 + ++L +G V A +G+ A +G +VE+V D+TP YAE+GGQ+ Sbjct: 472 ASEARILGI-----FVDGKRVPVVAHGSEGQ----AANGDRVELVLDRTPLYAESGGQIA 522 Query: 530 D----TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D +G G R +TDVQK A+ ++VH VE G +++ +D RR + Sbjct: 523 DEGTISGTGSGGSARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQ 582 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG + Q GS P LRFD + P+T + IE+ N+ + Sbjct: 583 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFSWQGPLTEDQRTHIEEVTNEAVQA 642 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T E A A GA AL G Y D VRVV + GG S LCGGTHV S+ +I Sbjct: 643 DFEVHTFTEQLEKAKAMGAMALFGESYPDEVRVVEI----GGPFSLELCGGTHVESSAQI 698 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+ ESSI +G+RR+EA G + HL + + LAS LKV V RV + + Sbjct: 699 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSDEVPTRVANLVD 758 Query: 766 EYRKLQLIHAKRKLQ----------LNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMD 814 +L A+++L+ +I +V ++ IS + S +L+S++ Sbjct: 759 -----RLKAAEKELERVRLANARAAAVNAAAGAERIGNVRVVAQRISGGITSADLRSLVG 813 Query: 815 ALQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGG 869 ++ ++ S ++ I++ + SV V +DL R N + + L+A V G GG Sbjct: 814 DIRGRLGSDPAVIALIAEGENDSVPYAVAANPAAQDLGIRANEL-IKPLAAAV--DGRGG 870 Query: 870 GRPHMAQSGGPNGNKADQAIAGVAS 894 G+ +AQ G D A+ V S Sbjct: 871 GKADLAQGSGKKPAGIDAALDAVRS 895 >gi|226288201|gb|EEH43713.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb18] Length = 962 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 342/973 (35%), Positives = 493/973 (50%), Gaps = 111/973 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R FL+FF+ NGH +PSSS++P +DPTL+F N+GM +K IF G +P + Sbjct: 17 VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD Sbjct: 77 HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + + D EA LW + G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG S +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 196 EIHYDR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRPLPNKHVDTGMGY 251 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281 ER+ ++LQ K++NYD D+F L + ++TG K+ ++ +RV+ DH+R+ Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRT 311 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG +P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 312 LTFAISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPE 371 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGL 396 + + + E L E+ F KTLDRG L + G D + DV ++LYDT G Sbjct: 372 IKRKATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADV-WRLYDTFGF 430 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + RGL ID N EE R RA+ S G G T + + ++ + G + Sbjct: 431 PVDLTQLMAEERGLK-ID----NGEFEEARLRAKEASKGQGKQTKDVVKLTVHD-LGLLE 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA---VSGQKVEV 513 + D+ + K R ++S +KAI + V+ + G++ + Sbjct: 485 TMD-DVPKTDDSAKFGR------------GNITSQIKAIYHNKKFVDSSKDIPEGEQFGI 531 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG I DG L + DVQ G +H ++ G S++ Sbjct: 532 ILDRTNFYAEQGGQEYDTGKIIIDGKAELAVEDVQVYG-GYVLHTGFMKYGSFNINDSVI 590 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H ++ ++L Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 650 Query: 633 KSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYED- 685 + IE D I QN V V + RE +G A+ G Y D VRVVS VE E+ Sbjct: 651 EEIERISTDYIRQNCAVYGKDVPLSIARE---ITGVRAVFGETYPDPVRVVSVGVELEEI 707 Query: 686 -GGVH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------ 731 VH S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 708 LKDVHDPRWKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRI 767 Query: 732 ---------RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQL 781 R M K + A L+V + E + K IH K + Q Sbjct: 768 AKEFGERLKRFEKMELGPKKEMEAKLLQVDLNQLTISAVEKAQFREKFTQIHKKVLEGQK 827 Query: 782 NVEDLSCHKIADV----------NFMSHIISEVD-SKELKSVMDAL---QKKIQSGIIML 827 + L K D H++ ++ S K+V D+L + K+Q + + Sbjct: 828 AAQKLESKKALDAIMGYFQAPENKDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYV 887 Query: 828 VGISKEKKASVL-IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 KE V V E+L + + D A A V+GG GG P ++ G + K Sbjct: 888 FAADKEAGKIVHGCHVAENLSQQGASPNDWANSVANVVGGRAGGKGP-ISIGNGTDAEKL 946 Query: 886 DQAIAGVASFLKK 898 D AI +L+K Sbjct: 947 DDAIKAATEYLEK 959 >gi|296122797|ref|YP_003630575.1| alanyl-tRNA synthetase [Planctomyces limnophilus DSM 3776] gi|296015137|gb|ADG68376.1| alanyl-tRNA synthetase [Planctomyces limnophilus DSM 3776] Length = 870 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 322/913 (35%), Positives = 486/913 (53%), Gaps = 75/913 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R +L+FF G PS L+P +DPT++FT +GM FKN F G + TT QK Sbjct: 6 LREKYLDFFVGKGCLRRPSDVLVPKDDPTVLFTPAGMNQFKNQFLGIGPLDFTKATTCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R G D+ NVG T+ HHTFFEMLGNFSFG YFK AI AW+ LT K L+ R Sbjct: 66 CLRTG----DISNVGVTSYHHTFFEMLGNFSFGDYFKREAIHWAWEFLTDKKWLGLEPSR 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE--TGP---CGPCSEIFFDQ 179 L +T Y +D+EA +W+ GL + +I R +NFW GP CGPCSEI++ Sbjct: 122 LTVTAYLDDDEAVGIWQNEIGLDSKQITREDEYENFWPAGSPTNGPDGVCGPCSEIYYTP 181 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237 P G + +EIWNLVF QF + + LPK +IDTGMGLER A V+ Sbjct: 182 ----PSG---------KKVEIWNLVFTQFNRVGDPPNNLRPLPKKNIDTGMGLERTAAVM 228 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIADGILPANE 295 Q +NY+ID+ + L ++ G+KY+ + V R I DH+R+ +F I +G +P E Sbjct: 229 QGFESNYEIDILRPLCDRGGEILGVKYDFASPVGRPLRRIADHVRACTFAIHEGCVPGPE 288 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 Y++R ++RRA LLG EP + L+P + M YPEL Q + + SE+ Sbjct: 289 KENYIIRLLLRRASMEGFLLGKREPFLSQLVPMIAEVMRKPYPELHQTIEAVSHVIESEE 348 Query: 356 ERFGKTLDRGLV----LLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 ++F ++RGL L+D S L+GD AF L+ T G +++ + + G++ Sbjct: 349 KQFLGVVERGLTKFRKLVDQARS--ANRTSLSGDEAFDLHQTDGFLIELTETLAAQEGVS 406 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +D+ F + EE + +A S +E +LK K G T+F+GY+ + Sbjct: 407 -VDMARFKECREEAK-KASGRGAFADSVMSEGPIDALK-KSGGTEFLGYEAIESK----- 458 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAEAGGQLGD 530 + ++ I+ ++ E S + +V D+TPFY E+GGQ+GD Sbjct: 459 ------------------ATIRGIIADKKLAESYSSPLVTIGIVLDKTPFYGESGGQVGD 500 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 TG + D QK E +FVH ++ G L+ + +D R + HSAT Sbjct: 501 TGTIRTASGEFTVYDTQKDGE-LFVHIGQLKAGSLKVGEEVTAGVDAHRRAAIRRAHSAT 559 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H+LHHAL T LG + +Q GS + D LRFD H + +T+ EL SIED +N +IA+ P+ Sbjct: 560 HILHHALRTTLGENATQRGSKVEGDQLRFDFAHPRSLTNEELISIEDQINQLIAEGAPIN 619 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 TR+M +A GA AL G KY D VRVV + G S CGGTH+S+TG++ + + Sbjct: 620 TRVMPINEAKKLGAMALFGEKYPDFVRVVEM-----GDFSREFCGGTHLSNTGQVGICRV 674 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR-VEEIWEEYR- 768 V + + AG+RRI +TG +A + + + L+ + +K + + R V + +E R Sbjct: 675 VKDELVAAGVRRISCVTGPKAIARMRESENLLREVGMLVKATTAEELPRKVAALQDELRV 734 Query: 769 -KLQLI-HAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 K +L +A + L L + D+ + H E+ ++LK ++D ++ + S Sbjct: 735 AKKELSQYASQSLAGMAAKLVNDAPMVGDIKVIVHRADELAREQLKELVDQIRAQAGSAA 794 Query: 825 IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 + LVG + + K S++ T+DL RF+A D + +AK++ GGGGGGR +A++GG K Sbjct: 795 V-LVGQAVDGKVSLIAGATKDLAQRFSASDAVKAAAKLV-GGGGGGRAELAEAGGKIPEK 852 Query: 885 ADQAIAGVASFLK 897 D+A+ +FLK Sbjct: 853 LDEALQEGLAFLK 865 >gi|295672445|ref|XP_002796769.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01] gi|226283749|gb|EEH39315.1| alanyl-tRNA synthetase [Paracoccidioides brasiliensis Pb01] Length = 962 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 342/973 (35%), Positives = 495/973 (50%), Gaps = 111/973 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R FL+FF+ NGH +PSSS++P +DPTL+F N+GM +K IF G +P + Sbjct: 17 VRNAFLDFFKDNGHTFVPSSSVVPLSDPTLLFANAGMNQYKAIFLGTVEPNSDFAQLKRA 76 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + LD Sbjct: 77 HNTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLD 136 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + + D EA LW + G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIEPDLEARDLWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG S +++ +EIWN VF+Q+ ++ + LP IDTGMG Sbjct: 196 EIHYDR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNREQDKSLRSLPNKHIDTGMGY 251 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281 ER+ ++LQ K++NYD D+F L + ++TG K+ ++ +RV+ DH+R+ Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFEKIREITGSRPYTGKFHEEDVDGVDTAYRVVADHIRT 311 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG +P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 312 LTFAISDGAVPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSQIVPTLVEQMGDMFPE 371 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGL 396 + + + E L E+ F KTLDRG L + G D + DV ++LYDT G Sbjct: 372 IKRKATDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLDRLHGADV-WRLYDTFGF 430 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + RGL ID N EE R RA+ S G G T + + ++ + G + Sbjct: 431 PVDLTQLMAEERGLK-ID----NGEFEEARLRAKEASKGQGKLTKDVVKLTVHD-LGLLE 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEV 513 + D+ + K R ++S +KAI + V ++ G++ + Sbjct: 485 TMD-DVPKTDDSAKFGR------------GNITSQIKAIYHNKKFVNSSKDIPEGEQFGI 531 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG I DG L + DVQ G +H ++ G S++ Sbjct: 532 ILDRTNFYAEQGGQEYDTGKIIIDGKAELTVEDVQVYG-GYVLHTGFMKYGSFNVNDSVI 590 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H ++ ++L Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRKVLGDGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 650 Query: 633 KSIEDNVNDIIAQNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVS--VEYED- 685 + IE D I QN V V + RE +G A+ G Y D VRVVS VE E+ Sbjct: 651 EEIERISTDYIRQNCAVYGKDVPLSIARE---ITGVRAVFGETYPDPVRVVSVGVELEEI 707 Query: 686 -GGVH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------ 731 VH S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 708 LKDVHDPRWKEISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRI 767 Query: 732 ---------RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQL 781 R M K + A L+V + E + + IH K + Q Sbjct: 768 AKEFGERLKRFEKMELGPKKEMEAKLLQVDLNQLTISAVEKAQFREQFTQIHKKVLEGQK 827 Query: 782 NVEDLSCHKIADV----------NFMSHIISEVD-SKELKSVMDAL---QKKIQSGIIML 827 + L K D H++ ++ S K+V D+L + K+Q + + Sbjct: 828 AAQKLESKKALDAIMGYFQAPENKDAPHLVLQLPISANAKAVSDSLNFVKTKMQDKSLYV 887 Query: 828 VGISKEKKASVL-IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 KE V V E+L + + D A A V+GG GG P ++ G + +K Sbjct: 888 FAADKEAGKIVHGCHVAENLSQQGASPNDWANSVANVVGGRAGGKAP-ISIGNGTDADKL 946 Query: 886 DQAIAGVASFLKK 898 D+AI +L+K Sbjct: 947 DEAIKAATEYLEK 959 >gi|289615775|emb|CBI57516.1| unnamed protein product [Sordaria macrospora] Length = 961 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 339/986 (34%), Positives = 497/986 (50%), Gaps = 141/986 (14%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQAV 61 +R TFL+FF + GH ++PSSS++P NDPTL+FTN+GM FK IF G ++ + Sbjct: 12 VRKTFLDFFAERGHNVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTEDMAQLKRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W+LLTK + LD Sbjct: 72 VDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAWSWELLTKVYGLD 131 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 +RLY+T + + D EA LW ++ G+ D II DNFW M + GPCGPCS Sbjct: 132 PQRLYVTYFEGSPDLGLEPDLEAKNLWLEV-GVPEDHIIPGNMKDNFWEMGDQGPCGPCS 190 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ + GG + + + +E+WN+VF+QF++Q + LP IDTGMG Sbjct: 191 EIHYDK---VGGGRNAAHLVNMDDPLVVEVWNIVFIQFDRQADKSLKSLPAKHIDTGMGF 247 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281 ER+ + LQ+KT+NY D+F L ++VTG KY +++ +RVI DH+R Sbjct: 248 ERLVSALQDKTSNYATDIFTPLFAKIQEVTGAREYTDKYGKDDVDGIDTAYRVIADHIRL 307 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 SF IADG P N GRGYV+RR++RR YAR E +LPAL +MG +PE Sbjct: 308 LSFAIADGAAPNNVGRGYVVRRVLRRGARYARKYFNAEIGTFFSRILPALVEQMGEQFPE 367 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLS---HLGKDEILNGDVAFKLYDTHGL 396 L++ + I+E L E+ F TLDRG + + GK ++ DV ++LYDT G Sbjct: 368 LVKKQTDIKEILDEEEVAFAVTLDRGEKQFEKYAALAIKSGKKKLSGADV-WRLYDTFGF 426 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARA--------------------HSLGL 436 P D+ + + RGL ID N+A E+ R ++A SL + Sbjct: 427 PEDLTKLMAEERGLT-IDEAEVNEAREKAREASKAVKESVQEFAKLNVHQIAELETSLNI 485 Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496 T++ + K G Q I G +F+K K L K P+ L Sbjct: 486 PRPTSDAKFLKGDAK-GKVQLI----FNGKEFLKSS-KDLPPKTPLGL------------ 527 Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFV 555 + D T FYAE+GGQ+ DTG I DG+ ++ DVQ+ G V Sbjct: 528 -----------------LLDNTNFYAESGGQVADTGRIIIDGVAEFKVLDVQEFG-GYIV 569 Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615 H+ +E G L + D R+ + NH+ TH+L+H+L +LG ++Q GS + D Sbjct: 570 HNGFIEYGELTEGDEVTCEYDELRRQPIRNNHTGTHILNHSLREVLGDEINQKGSLVDQD 629 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND 674 LRFD +H I ++K IED N I QNL ++ ++ + A G A+ G Y + Sbjct: 630 RLRFDFSHKAAIPLEDIKKIEDLSNHYIRQNLKAYSKEVDLDLAREIEGVRAVFGETYPN 689 Query: 675 RVRVVSVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 VRVVS+ E + S CGGTHV +TG I L IV ES I GIRRI Sbjct: 690 PVRVVSIGMEVDELLKNPKNPEWRKISVEFCGGTHVENTGLIKDLIIVEESGIAKGIRRI 749 Query: 724 EAITGQRARSHLMGQD-----EKLKSL---------ASFLKVSQGNVVGRV------EEI 763 A TG+ A H +D +KL+ + A+ +K + + G EE+ Sbjct: 750 VAYTGEGA--HQAQRDAQVFSDKLEHINALSYGPQKAAEIKAAAVELDGLTISVLTKEEL 807 Query: 764 WEEYRKLQ--LIHAKRKLQ-----LNVEDLSCHKIADVN-----FMSHIISEVDSKELKS 811 + K+Q ++ ++K Q ++ ++ H D N F+ H+ ++K + Sbjct: 808 RTRFTKIQKEVVDEQKKRQKAESKTALDTVASHFSKDENKDSKVFVGHLPISANAKAISD 867 Query: 812 VMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870 V+ + K + + + SK+ + + V L + A + V+GG GG Sbjct: 868 VITYYKTKDKERSVYVFAGSKDDQVMHGVYVGTALSSKGVTAEQWTSAVSAVIGGKTGGK 927 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 P Q G K ++A+ +L Sbjct: 928 EPSR-QGAGAEPEKLEEAVKKAEEWL 952 >gi|320103497|ref|YP_004179088.1| alanyl-tRNA synthetase [Isosphaera pallida ATCC 43644] gi|319750779|gb|ADV62539.1| alanyl-tRNA synthetase [Isosphaera pallida ATCC 43644] Length = 874 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 323/900 (35%), Positives = 481/900 (53%), Gaps = 61/900 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R ++L+FF G L PS L+P +DPT++FT +GM FK F G P ++ T QK Sbjct: 6 LRQSYLDFFVSKGCVLKPSDVLVPRDDPTVLFTPAGMNQFKREFMGLGDPTFKKAVTCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R G D+DNVGRT H TFFEMLGNFSFG YFK AI AW+ LTK +D RL Sbjct: 66 CLRTG----DIDNVGRTAFHETFFEMLGNFSFGDYFKREAIHWAWEYLTKILKIDPDRLS 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIFFDQGE 181 +TVY +D+EAF +W GL + +I R+ DNFW S+ G CGPCSEIFF Sbjct: 122 VTVYLDDDEAFAIWNNEIGLPSSRITRMDEADNFWPASAPSLGPNGVCGPCSEIFFHGN- 180 Query: 182 CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G + +EIWNLVF QF + ++ LP +IDTGMGLER A LQ Sbjct: 181 ------------GPKEVEIWNLVFTQFNRVGFRQLEPLPHKNIDTGMGLERAAACLQGVP 228 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + DLF+ ++ +V Y+ ++ V R + DH R+ +F I + + P+NE +GY Sbjct: 229 TVFMTDLFRPIVARVAEVLDQPYQADSPDGVRMRRMADHARALTFCIHENVRPSNEKQGY 288 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA+ LG EP + L P + +M YPE++ + I+ +R E+E F Sbjct: 289 VLRRLLRRAVLDGYHLGRREPFLYQLPPIVAQQMSGPYPEVVGSVPRIQAVIREEEEDFL 348 Query: 360 KTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 + L+ G+ LL+ + ++L+G AFKL+ THG+P+++++ + R L +D Sbjct: 349 RNLEHGMKLLEDTFRKTKAAGSDVLDGSTAFKLHATHGIPIEVVESLAAERELT-VDRPG 407 Query: 418 FNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 F A+EE +R S + K T+F+GY+ R + KV Sbjct: 408 FEAAVEEHARISRGTSEAAAVFEVGPLDELKKAHPQGTRFLGYETTRATG------KV-- 459 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG- 536 I L G + + G+ + A+ V DQ+PFY E+GGQ+GDTG G Sbjct: 460 ----IGLIQGPALVDSVAAGTGDHAQAAI-------VLDQSPFYGESGGQVGDTGRLTGP 508 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 DG +TD QKK + +H VE G + ++ +D + R + HSATHLLHHA Sbjct: 509 DGFLFLVTDTQKKND-FLLHLGRVEHGAIVPGATVEAEVDAERREAIRRAHSATHLLHHA 567 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LG H Q GS + PD LRFD + + + LK+IE VN+++ + P+ IM Sbjct: 568 LHKHLGEHAQQAGSKVEPDRLRFDFANPEAVGRDRLKAIEATVNNLVLGDAPITWTIMPL 627 Query: 657 EDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + A GA AL G KY + VRVV++ G +S LCGGTH+ +I + I+SE S+ Sbjct: 628 DQARKLGAMALFGEKYPENVRVVTM-----GDYSRELCGGTHLDHVSQIGVFAILSEESV 682 Query: 717 RAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 AG RRI A+TG+ A +L +D L+ +A+ LKV RV + EE + L+ + Sbjct: 683 AAGTRRITALTGRAALDYLKERDAVLEEIAATLKVPVAQAPARVAALLEEVKTLKKQATQ 742 Query: 777 RKLQLNVEDLSCH-----KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 RK + + ++ V ++ +I +E++ + D ++KK + +L+G Sbjct: 743 RKSAQTLGSIDSFLNEAVEVDGVQLVARVIDGGTVEEMRQLCDVMRKKAGERLAILLGSV 802 Query: 832 KEKKASVLIVVTEDLL--DRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 E K +++ T DL+ + NA ++ A ++ GGGGGG+P MA +GG +K + + Sbjct: 803 VEGKVNLVAAFTPDLVAQRKANAGQWLKILAPIV-GGGGGGKPEMATAGGKLPDKLPEVV 861 >gi|260942927|ref|XP_002615762.1| hypothetical protein CLUG_04644 [Clavispora lusitaniae ATCC 42720] gi|238851052|gb|EEQ40516.1| hypothetical protein CLUG_04644 [Clavispora lusitaniae ATCC 42720] Length = 964 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 322/970 (33%), Positives = 510/970 (52%), Gaps = 104/970 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + S++R+TFL++F+ H +PSSS++P NDPTL+F N+GM +K IF G P + T Sbjct: 19 SASTVRSTFLDYFKNKSHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPTSEFAT 78 Query: 63 -----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLT+ Sbjct: 79 LKRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTEV 138 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD+ RLY+T ++ DE EA + W + G++ D I+ +DNFW M + GPC Sbjct: 139 YKLDKDRLYVTYFEGDEKNGLEPDLEAKEYWLSV-GVAPDHILPGDAHDNFWEMGDQGPC 197 Query: 170 GPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG +S ++ +E+WN+VF+Q+ ++ LP IDT Sbjct: 198 GPCSEIHYDR----IGGRNAASLVNQDDPNVLEVWNIVFIQYNREADSSLKPLPSKHIDT 253 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVD 277 GMG ER+ +VLQ+K++NYD D+F+ + + +TG+ K+ ++ +RVI D Sbjct: 254 GMGFERLVSVLQDKSSNYDTDVFQPIFEEIRNITGVRPYTGKFGAEDVDGIDTAYRVIAD 313 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGS 335 H+R+ +F I+DG +P NEGRGYVLRRI+RR Y R L+ + S Sbjct: 314 HVRTLTFAISDGGVPNNEGRGYVLRRILRRGARYVRKYMNCPIGSFFQQLVDVVIENNSS 373 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDT 393 +PE+ + K +++E L E+ F KTLDRG L + +++ ++ L+G ++LYDT Sbjct: 374 IFPEIAKNKDMLKEILMEEEVSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDT 433 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G P+D+ + + GL ID +F +A EE R ++A + K G Sbjct: 434 YGFPVDLTRLMAEEAGLK-IDEEAFEKAKEESREASKATNT----------------KGG 476 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVE 512 AT I D+ S+ + + + S + AI + V+ + +GQ+ Sbjct: 477 AT-LIKLDVHALSELDNNESITKTNDVYKYGLDNIESKIVAIYDGSKFVDTISEAGQQFG 535 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 ++ D+TPFYAE GGQ DTG + DG +T+VQ I +H + G L+ ++ Sbjct: 536 IILDRTPFYAEQGGQEYDTGSLVIDGSAEFAVTNVQSYGSYI-LHTGTMVEGTLKLNDNV 594 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + T D R + NH+ TH+L+ AL +LG + Q GS + P+ LRFD +H + +T E Sbjct: 595 IATYDELRRWPIRNNHTGTHVLNFALKEVLGDGIDQKGSLVAPEKLRFDFSHKQALTPKE 654 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--------- 681 L+ +E+ ++II N V + A +G A+ G Y D VRVVS+ Sbjct: 655 LEQVENISSEIIKSNKQVYAEEVELTKAKQIAGVRAVFGETYPDPVRVVSIGVAVADLLK 714 Query: 682 --EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR------- 732 +D S CGGTHV+ TG+I I+ ES I GIRRI A+TG A+ Sbjct: 715 DPTNQDWTKLSIEFCGGTHVAKTGDIKDFVIIEESGIAKGIRRIVAVTGHEAQEVQRIAR 774 Query: 733 ------------SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQ 780 S ++++ K L LK +V+ + +++ E++ KL K L+ Sbjct: 775 EFSASLDSADKLSFGPEKEQRAKELGVALKQLSISVLDK-QKLNEKFTKLDK-SIKDHLK 832 Query: 781 LNVEDLSCHKIADVN-------------FMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 ++ S + VN F++H+ ++K + ++ ++K+ + + L Sbjct: 833 AKQKEESKKTLEAVNGWLKDEEKSKTAFFVAHVPISANAKAITEAINLIKKQHKDKSLYL 892 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + EK A + E + +A +LA+ +SA + GG GG+ ++ Q G + D Sbjct: 893 LTGTSEKVAHGCYISDEAISKGIDASELAKAVSAHI--GGKAGGKGNVVQGMGDSPEGID 950 Query: 887 QAIAGVASFL 896 A+ V L Sbjct: 951 AAVETVTKLL 960 >gi|88856253|ref|ZP_01130913.1| alanyl-tRNA synthetase [marine actinobacterium PHSC20C1] gi|88814572|gb|EAR24434.1| alanyl-tRNA synthetase [marine actinobacterium PHSC20C1] Length = 884 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 315/872 (36%), Positives = 474/872 (54%), Gaps = 72/872 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I+ +L +F + GH ++PS+SL+ +DPTL+FT +GMVPF TG + T Sbjct: 2 QTADIQNRWLTYFGERGHTIVPSASLV-SDDPTLLFTVAGMVPFVPYLTGLVPAPFDRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT-KEFD-- 119 + QKC+R D++ VG+T RH TFF+M GNFSFG YFK+ AIQ AW+ LT E D Sbjct: 61 SSQKCIRT----LDIEEVGKTPRHGTFFQMNGNFSFGDYFKKEAIQFAWEFLTLPESDGG 116 Query: 120 --LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 L++TVY++D++A WK+ +GL ++I R+ + N+WS + GP GPCSEIFF Sbjct: 117 LGFLPEDLWVTVYEDDDDAVAYWKETAGLPDERIQRLGMDTNYWSTGQPGPAGPCSEIFF 176 Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232 D+G G G + + +RY+EIWNLVFMQ+ E + K+ + LP +IDTGMGLER Sbjct: 177 DRGPAY-GADGGPATDDDRYVEIWNLVFMQYLRGEGKGKEFSILGELPNQNIDTGMGLER 235 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGI 290 +A + Q N Y+ID + ++ + +++G Y ++ V RV+ DH+RSS LIADG+ Sbjct: 236 VAFLKQGVENMYEIDQVRPVLDMAAELSGHTYGADHEADVRLRVVADHVRSSLMLIADGV 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+NEGRGYVLRR++RR + RLLG L PA M AYPE+ + I Sbjct: 296 TPSNEGRGYVLRRLLRRTVRAMRLLGVEGTTFAELFPASRDAMKDAYPEVEKDYDRISRV 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 + +E++ F +TL G +LD + H G E L D AF L+DT G P+D+ ++ Sbjct: 356 VLAEEDTFLRTLASGTTILDTAVVHTKESGASE-LPSDTAFLLHDTFGFPIDLTLEMAAE 414 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL+ +D +F+ ++EQR RA+A + +++K + + YGA + G G + Sbjct: 415 AGLS-VDREAFDTLMKEQRDRAKADA------SSKKQYLADLSVYGAFRAHGETTFTGYE 467 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 ++ D V+ I+ G V A SGQ E++ +T YAE+GGQ Sbjct: 468 TLETDSSVI-----------------GIIVDGVSVSRAASGQIAEIILAETSLYAESGGQ 510 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 D G +G L++ DVQ+ +G+ H + G + +D RR + H Sbjct: 511 EADAGAIVGASFHLEVLDVQRPVKGLISHKVRITAGEVGVGDPATALVDADWRRGATQAH 570 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS-IEDNVNDIIAQN 646 SATH++H AL ILG Q+GS +R D + S+ + SAE KS IE+ N + N Sbjct: 571 SATHVIHAALRQILGKDAHQSGSYNKAGYMRLDFSWSQAL-SAETKSEIEEVANTAVRDN 629 Query: 647 LPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 L V TRIM +DA GA AL G KY D VRVV + GG S LC GTHVS + EI Sbjct: 630 LEVSTRIMALDDAKDLGAMALFGEKYGDTVRVVEI----GGPWSLELCAGTHVSRSAEIG 685 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEE 766 L+ +V ESS+ + RR+E++ G A + + + L S LK + + R+ E+ Sbjct: 686 LISLVGESSVGSSNRRVESLVGMNAFRNFAAERAIVSELTSSLKTPREQLPDRIAEL--- 742 Query: 767 YRKLQLIHAKRKL-QLNVEDL---------SCHKIADVNFMSHIISEVDSK-ELKSVMDA 815 L A+RK+ QL L S + VN + + E+ S +L+ ++ + Sbjct: 743 --MANLKSAERKIAQLEAGQLSQRVPALIESARALGSVNAVIENVGELPSTDDLRGLVQS 800 Query: 816 LQKKI--QSGIIMLVGISKEKKASVLIVVTED 845 +++++ ++ ++ L +K A +IV T D Sbjct: 801 VRERMGAEASVVALAATIGDKPA--VIVATND 830 >gi|225351924|ref|ZP_03742947.1| hypothetical protein BIFPSEUDO_03528 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157171|gb|EEG70510.1| hypothetical protein BIFPSEUDO_03528 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 892 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 336/931 (36%), Positives = 507/931 (54%), Gaps = 88/931 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S I +L++F+K+GH ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 3 TSEIAKRYLDYFEKHGHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKSRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T + +DEEA +WK G+ + I + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWMTTFTDDEEARSMWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230 +G + GG P + E RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 177 RGPEYGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+++++G Y + V R++ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG T+P+M LLP M +YPEL + Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTDPVMPTLLPTSKAAMEPSYPELNDTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E E++ F +TL+ G + D ++ G D + +G+ AFKL+DT+G P++I ++ Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDLAVAKAKESGSDAV-SGEDAFKLHDTYGFPIEITLEMA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L K+++ + D Sbjct: 413 ADQGVK-VDEAKFRELMAEQKSRARADAL--------------KKRHNVDLSVYDDF--- 454 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQK-VEVVFDQTPF 520 +K L Q PID +A I+Q+G+ AV+G +EV+ D+TPF Sbjct: 455 -------KKTLVQ--PIDFLGYTDMSARAKVLGIMQEGKGSVPAVTGPATIEVILDRTPF 505 Query: 521 YAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 YA+AGGQL D G + D G L++ DVQK + + VH + G L + ID Sbjct: 506 YAQAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDR 565 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R ++ H+ATH++H AL LG +Q GS P+ LRFD S + + S+E V Sbjct: 566 RGAIARAHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNSVEARV 625 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ + +NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTH+ Sbjct: 626 NEKLRENLAVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHI 682 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 G+I + I+SE+SI +G+RR++A+ G+ A + + L+ + + R Sbjct: 683 DHVGKIGAINIMSEASIGSGVRRVDAVVGESAYEFNAREHALVSQLSDMVNARPDELADR 742 Query: 760 VEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--M 813 V + E R+L ++ + +L +V L A S +V +K ++ Sbjct: 743 VNALLARLKESDRRLATMY-ESQLAASVPALVSETKA-----SQAPVKVAAKNVEHFGSF 796 Query: 814 DALQKKI-----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKV 862 DAL+K + Q G ++ L G+++E K V + E + A DL R ++K+ Sbjct: 797 DALRKTVLDVRGQLGEEFPVVVALAGVNEEGKPMVAVATNEAARKQGIKAGDLVRGASKI 856 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 L GGGGGG+P AQ GG + K ++A+ +A Sbjct: 857 L-GGGGGGKPDFAQGGGADATKINEALEALA 886 >gi|187735876|ref|YP_001877988.1| alanyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835] gi|205829974|sp|B2UKT4|SYA_AKKM8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|187425928|gb|ACD05207.1| alanyl-tRNA synthetase [Akkermansia muciniphila ATCC BAA-835] Length = 942 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 307/796 (38%), Positives = 428/796 (53%), Gaps = 111/796 (13%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M + IR +FL+FF++ H ++PS+SL+P P L+FTN+GM F F G P + Sbjct: 1 MMTATEIRQSFLDFFREKQHTVVPSASLMP-QSPGLLFTNAGMNQFVPYFLGVWTPPWTP 59 Query: 61 V--TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+RAGGKHNDL++VG + HHTFFEMLGN+SFG YFK AI+ AW+L+ + + Sbjct: 60 ARATDTQKCIRAGGKHNDLEDVGYDSYHHTFFEMLGNWSFGDYFKREAIRWAWELVVERW 119 Query: 119 DLDQRRLYITVYDEDE----------EAFKLWKKI---SGLSAD-KIIRITTNDNFWSMA 164 RLY TVY D+ EA+ W ++ GL D I+ DNFW M Sbjct: 120 GFPAERLYATVYAPDKSKGDPGEFDREAWDFWAELFRSRGLDPDVHIVHGNVKDNFWMMG 179 Query: 165 ETGPCGPCSEIFFDQGECIP-GGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPK 221 ETGPCGPCSE+ D P G GS +++ ++ IEIWNLVF+Q+ ++ LP Sbjct: 180 ETGPCGPCSELHVD---LTPEGNTKGSLVNKDSDQCIEIWNLVFIQYNAESDGSMRNLPA 236 Query: 222 MSIDTGMGLERMATVLQ---------EKTNNYDIDLFKHLIQASEQVTGMKYEG------ 266 +DTGMG ER +++Q K +NY D+F+ L E ++G KY Sbjct: 237 CHVDTGMGFERACSIMQCTNGFKDFSRKPSNYATDVFRPLFDRLEVLSGRKYADVYPAPG 296 Query: 267 -----------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 + RVI DHLR+ SF IADGILP N GR YVLRRI+RRA+ Y R L Sbjct: 297 SKRVDAEDGTLQEAIAFRVIADHLRTLSFSIADGILPGNNGRNYVLRRILRRAVRYGRRL 356 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 G+T+P + L+ L G +PEL ++E L E+ F +TLDRGL L D + Sbjct: 357 GFTQPFLAELVDTLVESFGQVFPELAARATTVKEVLNREEASFNETLDRGLELFDAETAS 416 Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435 GK ++G+ AFKLYDT+G P+D+ + RGL ID+ FN+ +EEQR RARA Sbjct: 417 AGK---VSGEFAFKLYDTYGFPIDLTALLAEERGL-DIDMERFNRLMEEQRERARA---- 468 Query: 436 LGSGTTEKIWFSLKEKYGA-TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494 ++ +L K A T+F GYD+ + ++ V Sbjct: 469 ---ARKSEVVRALDLKTDAVTEFTGYDV-----------------------DECAATVLE 502 Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIF 554 + +QG+ + ++ D+TPFYAE GGQ+ D G G + VQ+ G Sbjct: 503 VSRQGD---------SLFIITDKTPFYAEMGGQVSDAGLIEIGGESYHVMAVQQI--GNA 551 Query: 555 VHHAIVERGILRTEMS--LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612 H + R L + + L+ID + RR++ +H+ATHLLH AL ++ +Q GS + Sbjct: 552 RAHVVEARPGLEVKPGDRVHLSIDAERRRRIEAHHTATHLLHCALHQVVSPDAAQQGSFV 611 Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL---LG 669 + D LRFD +S ++ +L+ IE+ VN I ++LPV R A G AA+ G Sbjct: 612 SEDRLRFDF-NSSAVSPDQLRLIEEKVNGWIEESLPV--HCTERAYADVKGNAAIAQFFG 668 Query: 670 TKYNDRVRVVSV-EYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 KY D VRVV V DG GV S CGGTH+++T I L I SE +I +G+RRIEA+ Sbjct: 669 DKYGDVVRVVQVGGCRDGLDGV-SMEFCGGTHIANTKNIGLFKIKSEGAIASGVRRIEAM 727 Query: 727 TGQRA----RSHLMGQ 738 TG A R H++ + Sbjct: 728 TGDAALEMIRQHVVAK 743 >gi|306822871|ref|ZP_07456247.1| alanine--tRNA ligase [Bifidobacterium dentium ATCC 27679] gi|309801116|ref|ZP_07695245.1| alanine--tRNA ligase [Bifidobacterium dentium JCVIHMP022] gi|304553503|gb|EFM41414.1| alanine--tRNA ligase [Bifidobacterium dentium ATCC 27679] gi|308222005|gb|EFO78288.1| alanine--tRNA ligase [Bifidobacterium dentium JCVIHMP022] Length = 892 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 342/927 (36%), Positives = 507/927 (54%), Gaps = 88/927 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S I +L++FQK+ H ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 3 TSEIAKRYLDYFQKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKNRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDQGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T + +DEEA +WK G+ + I + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWMTTFTDDEEARSMWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230 +G + GG P + E RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 177 RGPQYGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+A+++++G Y + V RV+ DH+RS+ +++D Sbjct: 234 ERLAYLLQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG T+P++ L P M +YPEL + Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRALGVTDPVLPTLFPVSKEAMVPSYPELESTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ E++ F +TL+ G + D ++ + +++GD AFKL+DT+G P+++ ++ Sbjct: 354 ESAYGEEDAFRRTLESGTEIFDLAVAKAKESGKTVVSGDDAFKLHDTYGFPIELTLEMAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ +D F + + EQ+SRARA +L K+++ + D Sbjct: 414 EQGVK-VDEAKFRELMAEQKSRARADAL--------------KKRHNVDLSVYDDF---- 454 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQ-KVEVVFDQTPFY 521 +K L Q PID +A I+Q+G+ AV+G +EV+ D+TPFY Sbjct: 455 ------KKTLVQ--PIDFLGYTDMSARARVIGIMQEGKGSVPAVTGPANIEVILDRTPFY 506 Query: 522 AEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AEAGGQL D G + D G L++ DVQK + + VH + G L + ID R Sbjct: 507 AEAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRR 566 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 ++ +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E VN Sbjct: 567 GAIARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPARSVMDAVEARVN 626 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 D I NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTH+ Sbjct: 627 DRIRDNLSVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHID 683 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 G+I + I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 684 HVGKIGAVNIMSEASIGSGVRRVDALVGQSAYEFNAREHALVSQLSDQLNARPDELAERV 743 Query: 761 E----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MD 814 ++ E R+L ++ + +L +V L +AD S +V SK + D Sbjct: 744 NTLLAKLKESDRRLAAMY-EGQLAASVPAL----VADAK-ASQAPVKVASKNVGHFGSFD 797 Query: 815 ALQKKI-----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKV 862 AL+K + Q G ++ L G++++ K V V T D + A DL R ++K+ Sbjct: 798 ALRKTVLDVRGQLGEDMPVVVALAGVNEDGKPMV-AVATNDAARKQGIKAGDLVRGASKI 856 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAI 889 L GGGGGG+P AQ GG + K D A+ Sbjct: 857 L-GGGGGGKPDFAQGGGSDATKIDAAL 882 >gi|302834443|ref|XP_002948784.1| hypothetical protein VOLCADRAFT_89008 [Volvox carteri f. nagariensis] gi|300265975|gb|EFJ50164.1| hypothetical protein VOLCADRAFT_89008 [Volvox carteri f. nagariensis] Length = 980 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 336/931 (36%), Positives = 497/931 (53%), Gaps = 90/931 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL FF+ GH LPSSSL+P DPT++ T +GM+ FK +F GQ TT Sbjct: 84 AEIREAFLSFFESKGHTRLPSSSLVP-EDPTVLLTIAGMLQFKPVFLGQAPRKVPTATTT 142 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKCVR ND+ NVG T RHHTFFEMLGNFSFG YFKE+AI+ AW+L T F L R Sbjct: 143 QKCVRT----NDIGNVGVTARHHTFFEMLGNFSFGDYFKEQAIRWAWELSTGVFGLPPER 198 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 ++++V++ED EA +W+ + G+ ++I R+ DNFWS TGPCGPCSE+++D Sbjct: 199 VWVSVFEEDGEAEAIWRDVVGVPPERIKRMGAADNFWSSGPTGPCGPCSELYYDFHP--E 256 Query: 185 GGLPGSS-EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNN 243 G G+S E+ R+IE +NLVFMQ ++ L +IDTGMGLERMA +LQ NN Sbjct: 257 RGTEGASLEDDTRFIEFYNLVFMQLNRKPDGSLEPLAAKNIDTGMGLERMAQILQGVPNN 316 Query: 244 YDIDLFKHLIQASEQVTGMKYEGNNIVNH---RVIVDHLRSSSFLIADGILPANEGRGYV 300 Y+ DL ++Q + ++ + Y + +VI DH R+ +++++DG+ P+N GRGYV Sbjct: 317 YETDLIFPIVQKAAEIAAVDYHSASPAVKTALKVIGDHTRAVTYMLSDGVTPSNTGRGYV 376 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RR + RLLG E + G P + + I + L E+ F Sbjct: 377 LRRLLRRVVMKGRLLGIREVFTPAVAAVAVGLSGPCDPAVQKNAQRIYDELAREEGLFVA 436 Query: 361 TLDRGLVLLDGVLSHLGK---DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 TL+RG LD +LS ++ G AF LYDT G PL++ Q++ ARG+ +D+ Sbjct: 437 TLERGQKQLDELLSAATASTGSRVIGGADAFMLYDTFGFPLELTQELAEARGVE-VDVAG 495 Query: 418 FNQALEEQRSRAR-----------AHSLGLGSGTTEKIWF---------SLKEKYGATQF 457 F+ +E QR R++ A L + T + W + + + G T F Sbjct: 496 FDGEMEAQRQRSKESRETVDLTAQAGLAQLAAQTHSRSWLPPGVRIPIRTQRMRVGPTSF 555 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 GY RG C + V ++++G+ VE +G + EV+ D Sbjct: 556 TGYSATRG-----------CGR------------VVGLMREGKPVERVHAGDRCEVLLDV 592 Query: 518 TPFYAEAGGQLGDTGCAI--------GDGIRLQITDVQKKAEG-IFVHHAIVERGILRTE 568 TPFYAE+GGQ+GD G + + + D QK A G +FVH V G L Sbjct: 593 TPFYAESGGQVGDMGRLVLPAAAGEAEVAAEVAVRDCQKAAGGSVFVHSCEVVAGELGVG 652 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 ++ +D RR++ +H+ATHLL AL +LG Q GS + LRFD ++ ++ Sbjct: 653 DAVNALVDDDLRRRVRAHHTATHLLQSALKIVLGPDTCQQGSLVNFQRLRFDFNLARAMS 712 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 +EL +E VN +AQ P+ TR+M ++A A+GA A+ G KY+D VRVV V G+ Sbjct: 713 PSELTEVERLVNCWVAQAAPLETRVMGLQEAKAAGATAMFGEKYDDVVRVVDVP----GI 768 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S LCGGTHV +T EI I+SES I +GIRR+EA+ G A +L D ++ LA Sbjct: 769 -SMELCGGTHVGNTAEIGAFKILSESGIASGIRRVEAVAGTAAVEYLHTVDGLVRGLAGQ 827 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNV---EDLSCHKIADVNFMSHIISEVD 805 LKV V RV + E R + + ++ K QL V + L + + +++E+ Sbjct: 828 LKVKLEEVPSRVAALQSELRSTEKLLSELKAQLAVAQSQSLVGEAVTAPGGLKVLVAELP 887 Query: 806 SK-ELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG 864 + E K++ AL + +++ K + + ++ AV + KV+G Sbjct: 888 GEVEAKAMQGALGDP--AAVLLASRAVDGSKVNFVAALSP------GAVKGGLQAGKVVG 939 Query: 865 G------GGGGGRPHMAQSGGPNGNKADQAI 889 GGGGG+P +AQ+GG + +K ++A+ Sbjct: 940 AVAKVCGGGGGGKPALAQAGGRDASKTEEAL 970 >gi|261337332|ref|ZP_05965216.1| alanine--tRNA ligase [Bifidobacterium gallicum DSM 20093] gi|270277705|gb|EFA23559.1| alanine--tRNA ligase [Bifidobacterium gallicum DSM 20093] Length = 897 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 339/930 (36%), Positives = 506/930 (54%), Gaps = 79/930 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I +L +F++ GH ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 3 TAEIAKRYLNYFEQQGHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPSHRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A+DLLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYDLLTMPQDQGGL 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D+ +L++T + +D+EA LW+ G+ + I + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDKDKLWMTTFTDDDEARALWRN-EGVDPEHIQILGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMS---IDTGMGL 230 +G + GG P + E RYIEIW+LVF F N K + I+ +++ IDTG GL Sbjct: 177 RGPEYGVEGG-PIADEN--RYIEIWDLVFENFMVDNVKSKTDLHIVGELAHKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+A E++TG+KY + + V RV+ DH+RS+ +++D Sbjct: 234 ERVAYLLQGKQNIYETDEVYPVIEACEKITGIKYGDDKDADVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R+LGY +P+M LLP M YPEL + Sbjct: 294 GVRPSNAGRGYVLRRLIRRTVEAMRVLGYQDPVMPQLLPVSEAAMEPNYPELAATFKDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--------ILNGDVAFKLYDTHGLPLDI 400 E E++ F +TL G+ + D + KDE ++ GD AF+L+DT+G P+++ Sbjct: 354 EAAYGEEDAFRRTLTNGIEIFDMAVKK-AKDEDTDSTEPAVITGDTAFQLHDTYGFPIEL 412 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 ++ +G+ +D F + + EQ+SRAR +LK+++ Sbjct: 413 TLEMAAEQGVK-VDEAKFRELMAEQKSRARQD--------------ALKKRHNV------ 451 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQTP 519 DL F K + + +++ S V I+++GE AV+ VEV+ D TP Sbjct: 452 DLSEYDDFKKTLESPIVFEGYTEVST--RSRVIGIMKEGEGSVPAVTAPATVEVILDHTP 509 Query: 520 FYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 FYAEAGGQL D G I DG L++ DVQK + + VH + G L + +ID + Sbjct: 510 FYAEAGGQLADEGTIIADDGAVLEVDDVQKPIKDLIVHQCRLVEGTLVVGADVTASIDIE 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R ++ H+ATH++H AL LG H +Q GS P+ LRFD S + + S+E Sbjct: 570 RRGAIARAHTATHIVHKALREELGPHATQRGSEDAPNRLRFDFQWSSAPSKDLMNSVEAR 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 VN+ + NL V T+ M +DAIA GA L G KY D VRVV++ +DG S LCGGTH Sbjct: 630 VNERLRDNLRVSTQEMKFDDAIALGAMHLFGEKYGDIVRVVTIG-DDG--WSRELCGGTH 686 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V G+I + I+SE+SI +G+RR++A+ GQ A + + L+ L + Sbjct: 687 VDYAGKIGQINIMSEASIGSGVRRVDALVGQSAYDFSAREHALVSQLSDTLNARPDELAD 746 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHK-------IADVNFMSHIISEVDSK 807 R+ ++ E R+L ++ + +L L V DL + V + H S DS Sbjct: 747 RINTLLGKLKESDRRLSAMY-ESQLSLMVPDLVQQTKQANDTVLVAVKNVGHFGS-FDSL 804 Query: 808 ELKSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLG 864 K+VMD + + ++ L G++ + K + + E ++ A L +AK L Sbjct: 805 R-KTVMDVRNRLGADKPVVVALAGLTDDDKPMIAVATNEAAREQGIKAGALVSAAAKTL- 862 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 GGGGGG+P AQ GG + K D A+A + + Sbjct: 863 GGGGGGKPDFAQGGGSDAPKIDDALANLKA 892 >gi|300781084|ref|ZP_07090938.1| alanine--tRNA ligase [Corynebacterium genitalium ATCC 33030] gi|300532791|gb|EFK53852.1| alanine--tRNA ligase [Corynebacterium genitalium ATCC 33030] Length = 893 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 318/873 (36%), Positives = 475/873 (54%), Gaps = 65/873 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VTTV 64 IR F + F GH +PS+SLI +DPTL+F N+GMVPFK F GQ+ P + + T++ Sbjct: 6 IRDRFTQHFVDAGHIPVPSASLI-LDDPTLLFVNAGMVPFKPYFLGQQTPPFDSGTATSI 64 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKCVR D++ VG T RH+TFF+M GNFSFG YFKE AI+LAW LLT F Sbjct: 65 QKCVRT----LDIEEVGITTRHNTFFQMAGNFSFGQYFKEGAIELAWSLLTNSQADGGFG 120 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RL++TVY ED+EA ++W+ G+ A++I R+ DNFWSM GPCGP SEI++D+ Sbjct: 121 LDPERLWVTVYTEDDEAAEIWENKIGVPAERIQRMGMEDNFWSMGVPGPCGPSSEIYYDR 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF--EQQNKQERF----ILPKMSIDTGMGLERM 233 G G G + RY+EIWNLVFM+ + +K+ F LP +IDTG+G+ER+ Sbjct: 181 GPE-HGKEGGPIADDNRYMEIWNLVFMESIRGEGDKKGGFEILGELPNKNIDTGLGIERL 239 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----EGN-NIVNHRVIVDHLRSSSFLIA 287 A +LQ N Y+ DL +I+A+E++TG Y EG + V RVI DH R++ +I Sbjct: 240 ACILQGVDNVYETDLLHPVIEATEKLTGTTYGAGGKEGELSDVRFRVIADHSRTAMMIIL 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P+NEGRGY+LRR++RR + ARLLG + + + M ++PE+ Q + I Sbjct: 300 DGVTPSNEGRGYILRRLLRRIVRSARLLGAQGTTIETFMNTIMDTMAPSFPEIEQNRERI 359 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +E++ F KTL+ G D + + +L G AF+L+DT+G P+D+ ++ Sbjct: 360 LRVAVNEEKAFLKTLESGTHRFDEAAATVKGSGQTVLPGGQAFELHDTYGFPIDLTLEMA 419 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D+ +F+ A++EQR RA+A S +G ++ + T+F+G+D L Sbjct: 420 AEAGLE-VDMAAFDAAMKEQRDRAKADSKAKKTGNIDESLYREWVDAHPTEFVGFDTL-- 476 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 D KV+ +V+ GE V E G +VEV+ D TP YAE G Sbjct: 477 ----DHDSKVI-----------------GLVRGGEKVGEVGQGDEVEVILDITPMYAEGG 515 Query: 526 GQLGDTG-CAIGDGIRLQITDVQKKA-EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GQL D G +GD + L + DVQK + ++VH A VE G L ++ ++ R Sbjct: 516 GQLADRGRIVVGDTV-LSVHDVQKVGNKKLWVHKATVENGGLDLGQTVRTEVNPTWRHGA 574 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 H+ATHL+H AL +LG Q GS P LRFD ++ +TSA+L I N + Sbjct: 575 RQAHTATHLIHAALRQVLGPTAVQAGSMNKPGYLRFDFNYTDQLTSAQLDEIAVIANQAV 634 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + V T + E A GA AL G Y D VRVV + GG S LCGGTHV + Sbjct: 635 DADFAVNTFETSLERAKEMGAMALFGENYGDEVRVVEI----GGPFSIELCGGTHVEHSS 690 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + ++ ESS+ +G RRIEA +G + + + LA LK + R+ ++ Sbjct: 691 QIGPVAVLGESSVGSGARRIEAYSGMDSFAFFSKEAALASGLAEELKTPTDQLPERIAQL 750 Query: 764 WEEYRKLQL-IHAKRKLQLNVED----LSCHKIADVNFMSHIISE-VDSKELKSVMDALQ 817 E R + I RK +L + I D+ F++ + + + +++++ L+ Sbjct: 751 TERLRAAEKEIENLRKKELANQTGELVKQAETIGDIKFLAVKLPDGLTGGDMRTMATDLR 810 Query: 818 KKIQSG-IIMLVGISKEKKASVLIVVTEDLLDR 849 ++ S ++++ S + K + T +D+ Sbjct: 811 GRLGSDPAVIVLASSTDGKVPFAVAATPGAVDK 843 >gi|171743066|ref|ZP_02918873.1| hypothetical protein BIFDEN_02192 [Bifidobacterium dentium ATCC 27678] gi|283455924|ref|YP_003360488.1| alanyl-tRNA synthetase [Bifidobacterium dentium Bd1] gi|171278680|gb|EDT46341.1| hypothetical protein BIFDEN_02192 [Bifidobacterium dentium ATCC 27678] gi|283102558|gb|ADB09664.1| Alanyl-tRNA synthetase [Bifidobacterium dentium Bd1] Length = 892 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 341/927 (36%), Positives = 507/927 (54%), Gaps = 88/927 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S I +L++FQK+ H ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 3 TSEIAKRYLDYFQKHDHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKNRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDQGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T + +DEEA +WK G+ + I + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWMTTFTDDEEARSMWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230 +G + GG P + E RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 177 RGPQYGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288 ER+A +LQ K N Y+ D +I+A+++++G Y + V RV+ DH+RS+ +++D Sbjct: 234 ERLAYLLQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG T+P++ L P M +YPEL + Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRALGVTDPVLPTLFPVSKEAMVPSYPELESTFHEVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILC 406 E+ E++ F +TL+ G + D ++ + +++GD AFKL+DT+G P+++ ++ Sbjct: 354 ESAYGEEDAFRRTLESGTEIFDLAVAKAKESGKTVVSGDDAFKLHDTYGFPIELTLEMAE 413 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 +G+ +D + F + + EQ+ RARA +L K+++ + D Sbjct: 414 EQGVK-VDEVKFRELMAEQKGRARADAL--------------KKRHNVDLSVYDDF---- 454 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQ-KVEVVFDQTPFY 521 +K L Q PID +A I+Q+G+ AV+G +EV+ D+TPFY Sbjct: 455 ------KKTLVQ--PIDFLGYTDMSARARVIGIMQEGKGSVPAVTGPANIEVILDRTPFY 506 Query: 522 AEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 AEAGGQL D G + D G L++ DVQK + + VH + G L + ID R Sbjct: 507 AEAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDRR 566 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 ++ +H+ATH++H AL LG +Q GS P+ LRFD SK + + ++E VN Sbjct: 567 GAIARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSKAPARSVMDAVEARVN 626 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 D I NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTH+ Sbjct: 627 DRIRDNLSVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHID 683 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 G+I + I+SE+SI +G+RR++A+ GQ A + + L+ L + RV Sbjct: 684 HVGKIGAVNIMSEASIGSGVRRVDALVGQSAYEFNAREHALVSQLSDQLNARPDELAERV 743 Query: 761 E----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MD 814 ++ E R+L ++ + +L +V L +AD S +V SK + D Sbjct: 744 NTLLAKLKESDRRLAAMY-EGQLAASVPAL----VADAK-ASQAPVKVASKNVGHFGSFD 797 Query: 815 ALQKKI-----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKV 862 AL+K + Q G ++ L G++++ K V V T D + A DL R ++K+ Sbjct: 798 ALRKTVLDVRGQLGEDMPVVVALAGVNEDGKPMV-AVATNDAARKQGIKAGDLVRGASKI 856 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAI 889 L GGGGGG+P AQ GG + K D A+ Sbjct: 857 L-GGGGGGKPDFAQGGGSDATKIDAAL 882 >gi|110004987|emb|CAK99318.1| probable alanyl-trna synthetase protein [Spiroplasma citri] Length = 918 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 302/940 (32%), Positives = 496/940 (52%), Gaps = 104/940 (11%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 ++IR +L+FF+ H LPS SLIP +DP+L++ NSG+ K F G++ P +T Sbjct: 7 NAIRKMWLDFFRSKDHYELPSVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL--TKEFDLDQ 122 QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+ L K D Sbjct: 67 QKSIRT----NDIENVGYTARHHTLFEMLGNFSIGDYFKKEAIMYAWEFLIDKKWIGFDP 122 Query: 123 RRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGEC 182 +LY+T+Y +D+EA+++W+ + GLS ++II+ + NFW + GPCGP +EIF+D+GE Sbjct: 123 AKLYVTIYKDDQEAYEIWRNVIGLSDERIIKGDKDTNFWEIG-AGPCGPNTEIFYDRGEK 181 Query: 183 -----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 I L E +RY+E+WN+VF Q+ LP+ +IDTG GLER+A+++ Sbjct: 182 YDPEQIGLKLLQDDLENDRYLEVWNIVFSQYNNNGNGTYTDLPRKNIDTGAGLERIASII 241 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE-------GNNI------VNHRVIVDHLRSSSF 284 QE N++ DLF +I+A E++ KY NN +VI DH+R+ +F Sbjct: 242 QETPTNFETDLFMPIIKAVEKLVNGKYHYDETALFSNNSEQLKINTAFKVIADHIRAVTF 301 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG P N+ RGYV+RR++RRA Y + + TEP + L+ + M Y L++ + Sbjct: 302 AIVDGAFPGNKDRGYVIRRLIRRASLYGKKIDLTEPFLFKLVGTVVKIMQEYYSYLVEKQ 361 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 ++E+ + E+++F KTL++G L + V + G ++ + AF+L++++G P++++++ Sbjct: 362 PIVEQAVLDEEKKFLKTLEQGSKLFNEVKTKYG---TISKEHAFRLFESYGFPIELIEEE 418 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 G+ +D F++ LE ++ +R + + + + F+ + A+QF+GY+ + Sbjct: 419 AHEVGI-NVDRAGFDELLENAKTISRTNRKDIKAIHLQSELFTKLDV--ASQFVGYEYEQ 475 Query: 465 GSK----FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + FM D KP LTN I + +TPF Sbjct: 476 VNNTEIVFMFAD-----DKPVTKLTNTTGYI----------------------ILKETPF 508 Query: 521 YAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 YAE GGQ D G + D + DVQ+ +H VE G L + +ID R Sbjct: 509 YAEKGGQAADHGLILKDNTTAYVLDVQQGPNKQHLHFVKVE-GTLAIGDLVNASIDSDRR 567 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 NHS THL+H AL +LG+HV Q GS + LR D+TH++ IT AE+ ++E +V Sbjct: 568 FYTRKNHSGTHLIHAALREVLGNHVMQTGSYNDAERLRIDITHNQAITPAEITAVEGSVA 627 Query: 641 DIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 I +P + + A+ A A KY+ VR+V G +S LCGGTHV Sbjct: 628 KAIKTAIPCEIIYTDMQTALDVHHALAFFTEKYDAEVRIVKF-----GTYSCELCGGTHV 682 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD---EKLKSLASFLKVSQGNV 756 +++ ++ L + S AG RI AIT + + + + EK +++ F K +QG Sbjct: 683 ANSQDVEDLLVTGLESKGAGTFRIHAITSNKTIASYLNEQFLKEKTEAINYFDKYNQGKA 742 Query: 757 V---GRVEEIWEE----------YRKLQLIHAK-----RKLQLNVEDLSCHKIAD----- 793 +++ WE+ +++L+ + A+ ++ Q +++ + Sbjct: 743 ALLDQSLDQTWEQISNLTVSKPNWKQLKELVAQFKEDFKRWQKQYDNILIQQFVKQYNTF 802 Query: 794 -------VNFMSH-IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTED 845 +NF++H ++VD LK ++D + + ++ +I LV +S E +A++++ V++D Sbjct: 803 LPQDKNGINFLTHQFTTKVDINALKVLIDDYKARYRNLLIFLVDVSDETQATLIVGVSDD 862 Query: 846 LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L DR+ A + + +L G GGG +AQSG N +K Sbjct: 863 LHDRYQAGKIIQQLNPLLNGKGGGNNS-VAQSGFNNKDKT 901 >gi|212716059|ref|ZP_03324187.1| hypothetical protein BIFCAT_00972 [Bifidobacterium catenulatum DSM 16992] gi|212661426|gb|EEB22001.1| hypothetical protein BIFCAT_00972 [Bifidobacterium catenulatum DSM 16992] Length = 892 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 336/927 (36%), Positives = 505/927 (54%), Gaps = 88/927 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S I +L++F+K+GH ++PS+SLI N PT +FT +GMVPF G++ P + + Sbjct: 3 TSEIAKRYLDYFEKHGHLIVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPKSRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T + +DEEA +WK G+ + I + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWMTTFTDDEEARSMWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230 +G + GG P + E RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 177 RGPEYGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+++++G Y + V R++ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKQNIYETDEVFPVIEAAQKLSGRTYGDDEAMDVRFRIVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG T P+M LLP M +YPEL + Sbjct: 294 GVRPSNNGRGYVLRRLLRRTVKAMRELGVTGPVMPTLLPTSKAAMEPSYPELNNTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E E++ F +TL+ G + D ++ G D + +G+ AFKL+DT+G P++I ++ Sbjct: 354 EAAYGEEDAFRRTLESGTEIFDLAVAKAKESGSDAV-SGEDAFKLHDTYGFPIEITLEMA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +G+ +D F + + EQ+SRARA +L K+++ + D Sbjct: 413 ADQGVK-VDEAKFRELMAEQKSRARADAL--------------KKRHNVDLSVYDDF--- 454 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAVSGQ-KVEVVFDQTPF 520 +K L Q PID +A I+Q+G+ AV+G +EV+ D+TPF Sbjct: 455 -------KKTLVQ--PIDFLGYTDMSARAKVLGIMQEGKGSVPAVTGPANIEVILDRTPF 505 Query: 521 YAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 YA+AGGQL D G + D G L++ DVQK + + VH + G L + ID Sbjct: 506 YAQAGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLDR 565 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R ++ H+ATH++H AL LG +Q GS P+ LRFD S + + S+E V Sbjct: 566 RGAIARAHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDAMNSVEARV 625 Query: 640 NDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHV 699 N+ + +NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTH+ Sbjct: 626 NEKLRENLAVTTQEMKFDDAIALGAMHLFGEKYGDVVRVVSIG-EDG--WSRELCGGTHI 682 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGR 759 G+I + I+SE+SI +G+RR++A+ G+ A + + L+ + + R Sbjct: 683 DHVGKIGAINIMSEASIGSGVRRVDAVVGESAYEFNAREHALVSQLSDMVNARPDELADR 742 Query: 760 VE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--M 813 V ++ E R+L ++ + +L +V L A S +V +K ++ Sbjct: 743 VNALLAKLKESDRRLAAMY-ESQLSASVPVLVAETKA-----SQAPVKVAAKNVEHFGSF 796 Query: 814 DALQKKI-----QSG-----IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKV 862 DAL+K + Q G ++ L G+++E K V + E + A DL R ++K+ Sbjct: 797 DALRKTVLDVRGQLGEENPVVVALSGVNEEGKPMVAVATNEAARKQGIKAGDLVRGASKI 856 Query: 863 LGGGGGGGRPHMAQSGGPNGNKADQAI 889 L GGGGGG+P AQ GG + K D+A+ Sbjct: 857 L-GGGGGGKPDFAQGGGVDATKIDEAL 882 >gi|261749137|ref|YP_003256822.1| alanyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497229|gb|ACX83679.1| alanyl-tRNA synthetase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 887 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 318/930 (34%), Positives = 489/930 (52%), Gaps = 92/930 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR TFL+FFQ H+++PS + +DPTL F N+GM PFK F G +KP Y + VQK Sbjct: 6 IRDTFLDFFQNKKHKIIPSFPIYLKDDPTLFFINAGMNPFKEYFLGHKKPEYTRIVNVQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+NVG N HHT FEMLGN+SFG Y ++ I+ AW+LLTK +++ ++ LY Sbjct: 66 CLRVSGKHNDLENVGHDNYHHTMFEMLGNWSFGDYSRKETIEWAWELLTKVYNIPEKNLY 125 Query: 127 ITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 I+++ DE D+E F+ WK + ++ + ++ +NFW M GPCGPCSEI D Sbjct: 126 ISIFIGDEKEGLSMDKETFQHWK--TFINKENLVFFGKEENFWEMGSIGPCGPCSEIHID 183 Query: 179 -----QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS---IDTGMGL 230 + E IPG +++ + IEIWNLVF++F +++ IL K+S +DTGMGL Sbjct: 184 LRNKEEKEKIPGKYL-INKKNPKVIEIWNLVFIEFYRRSDG---ILEKLSTKHVDTGMGL 239 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVNHRVIVDHLRSSSFLIAD 288 ER+ VLQ K ++YD D+F +I+ ++ G K E N ++ R++ DHLR+ F I D Sbjct: 240 ERLCMVLQGKFSSYDTDIFFPIIRDIKESLGGIYKEEFNQDISIRIVADHLRALVFSIFD 299 Query: 289 GILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 G LP+N G GYV+RR++RRA+ Y R L EP + + +L M +++PEL + K I Sbjct: 300 GQLPSNNGAGYVIRRLLRRAVIYVTRFLYQKEPFIYKFVDSLVRRMKNSFPELEKKKDYI 359 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 + ++ E+ F + L++G + ++ + ++L+G F+LYDT+G PL + I Sbjct: 360 QNVIKEEESSFFQVLEKGYERIQHIILKAKERNQKVLDGKSLFQLYDTYGFPLK-LSKIF 418 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI----WFSLKEKYGATQFIGYD 461 ID SF + L +Q+ ++ + KI +FS K FIGYD Sbjct: 419 AEENNLYIDEKSFEKRLLKQKEKSHKKKNIIIKNDWIKIHSNQFFSEK-----NNFIGYD 473 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 L C I+Q +I ++ E+VF +TPFY Sbjct: 474 FLE------------CH--------------ILIIQYRKIEDKIKENHYYELVFSKTPFY 507 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 E GGQLGDTG D ++ I KK I +H IV + + ++ R+ Sbjct: 508 PEGGGQLGDTGFIKNDLEKIFIEKT-KKENSIIIH--IVRKLPVNIYSRFQAIVNKNRRK 564 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 ++ NH++THLLH +L ILG H+ Q GS + D LRFD +H K IT EL IE+ V Sbjct: 565 KIEKNHTSTHLLHFSLKKILGEHIQQKGSYVGEDYLRFDFSHPKKITIEELFQIEEMVQK 624 Query: 642 IIAQNLPVVT-RIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 +I NLP+ R + ++AI G + KY VR + + D SS LC GTH Sbjct: 625 LIFSNLPLEERRSIPLQEAIKKGYNGIFYEKYEKEVR--GITFGD----SSELCIGTHAK 678 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG---QDEKLK--------SLASFL 749 +TG I + IVSE S+ GIRRI+A T ++A +L Q++ L+ ++ S Sbjct: 679 NTGCIQVFSIVSELSVSYGIRRIKAFTSEKAIQYLKSIHFQEKSLRKILNNTESTIKSIF 738 Query: 750 KVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKEL 809 + + N + + ++++++ I K L ++ S I D++F + D Sbjct: 739 SLQEQNKKLKKKLEKLQFQQIK-IFKKEYLLKAIQLPSITYICDISFEE---KDFDLNLF 794 Query: 810 KSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN--AVDLARLSAKVLGGGG 867 K ++ L+ I S + M+VG K+KK + I +++ ++ N A + R + + G Sbjct: 795 KKIILDLRNVI-SNLFMVVGFIKDKKPIIFISISDHIIKNKNIHANQIIRKMSDYI-HGK 852 Query: 868 GGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 G+ A + G N N + +LK Sbjct: 853 SWGKSFFATAIGSNQNGLSLVLKTTKEYLK 882 >gi|294654445|ref|XP_456501.2| DEHA2A03652p [Debaryomyces hansenii CBS767] gi|199428887|emb|CAG84453.2| DEHA2A03652p [Debaryomyces hansenii] Length = 1021 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 326/929 (35%), Positives = 491/929 (52%), Gaps = 107/929 (11%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 S +R+TFL++F+ K H +PSSS++P NDPTL+F N+GM +K IF G P T Sbjct: 80 SRVRSTFLDYFKVKQNHTFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFSTL 139 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLT+ + Sbjct: 140 KRAVNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAISWSWELLTEVY 199 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L+Q RLY+T + DE EA W + G++ D I+ DNFW M + GPCG Sbjct: 200 KLEQDRLYVTYFGGDEKQGLQPDLEAKNFWLAV-GVAEDHILPGNLEDNFWEMGDQGPCG 258 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG SS + +E+WN+VFMQ+ ++ LP IDTG Sbjct: 259 PCSEIHYDR----IGGRNASSLVNMDDPNVLEVWNIVFMQYNREPDSSLRSLPAKHIDTG 314 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278 +G ER+ ++LQ K++NYD D+F+ + ++TG++ Y G + I +RVI DH Sbjct: 315 LGFERLVSILQNKSSNYDTDVFQPIFNKIREITGVRPYTGKFGSEDRDGIDTAYRVIADH 374 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F I DG +P NEGRGYVLRRI+RR Y R + Y L+P + + Sbjct: 375 VRTLTFAITDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVPVVVEQNSEI 434 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTH 394 +PE+++ + + E L E+ F KTLDRG L + +++ ++ L+G ++LYDT+ Sbjct: 435 FPEILKNQQDLTEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTY 494 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + GL ID F +A EE R ++A + G + +L E G Sbjct: 495 GFPVDLTRLMAEEAGLK-IDEEGFEKAKEESREASKATNNKAGVSLIKLDVHALSELDGN 553 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 + D K+ E+ K + + NG SS V +I + +G + ++ Sbjct: 554 DKVPKTD--DSFKYDIENIKANV----VAIYNG-SSFVDSISE---------AGSQAGIL 597 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+TPFYAE+GGQ DTG + DG+ +++VQ G +H + G L+ E ++ Sbjct: 598 LDKTPFYAESGGQEYDTGKLVIDGVAEFSVSNVQVYG-GYVLHTGSLLEGSLKLEDEIIA 656 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 T D R + NH+ TH+L+ AL +LG +V Q GS + P+ LRFD +H + +T EL Sbjct: 657 TYDELRRWPIRNNHTGTHVLNFALREVLGDNVDQKGSLVAPEKLRFDFSHKQGLTPDELL 716 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---------EY 683 +E ND I +N V + + DA G A+ G Y D VRVVS+ + Sbjct: 717 KVETISNDYIKENKQVYAKDIRLNDAKEIDGLRAVFGETYPDPVRVVSIGTSVEDLLKDP 776 Query: 684 EDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR--------- 732 ++ H S LCGGTHV+ TG+I L I+ ES I GIRRI A+TG A Sbjct: 777 KNSEWHKVSIELCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGTEAHQVQKVASDF 836 Query: 733 ----SHLMG------QDEKLKSLASFLKVSQGNVVGRV----------EEIWEEYRKLQL 772 H MG ++ K K L LK +V+ + + I ++ + +Q Sbjct: 837 DKELDHTMGLASGPIKETKAKELGVSLKKLSISVLDKRSLNDKFNKLDKSIKDQLKAVQK 896 Query: 773 IHAKRKLQ-----LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 +K+ L+ LN ED + +S + ++K + ++ L+K+ +S I L Sbjct: 897 EESKKVLEVVNTWLNAEDAKDY------LVSFVPISANAKAITEAINLLKKQHKSKSIYL 950 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLA 856 + S +K A V E + +A +LA Sbjct: 951 ITGS-DKVAHGCYVSDEAIAKGIDATNLA 978 >gi|255580622|ref|XP_002531134.1| alanyl-tRNA synthetase, putative [Ricinus communis] gi|223529283|gb|EEF31254.1| alanyl-tRNA synthetase, putative [Ricinus communis] Length = 1025 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 335/972 (34%), Positives = 481/972 (49%), Gaps = 121/972 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R TF+ FF+ H SS ++P NDPTL+F N+GM FK IF G P + +A Sbjct: 86 VRDTFISFFEDKKHVHWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKLSRA 145 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AI AW+LLTK + L Sbjct: 146 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAIGWAWELLTKIYKL 204 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y T + DE EA W + L ++++ DNFW M +TGPCGPC Sbjct: 205 PADRIYATYFGGDEKAGLAPDAEARDFWLQF--LPPERVLPFGCKDNFWEMGDTGPCGPC 262 Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +EI +D+ G S + + IEIWNLVF+QF +++ LP +DTGMG Sbjct: 263 TEIHYDR----VGNRDASQLVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPAKHVDTGMG 318 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLR 280 ER+ +VLQ K +NYD D+F + A +Q TG + + + +RV+ DH+R Sbjct: 319 FERLTSVLQNKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDVDRVDMAYRVVADHIR 378 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPE 339 + SF IADG P NEGR YVLRRI+RRA+ Y + +L E L+ + MG +PE Sbjct: 379 TLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNIVVKVMGDVFPE 438 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPL 398 LIQ ++ I E ++ E+ FGKTL +G+ + GK L AF L+DT+G PL Sbjct: 439 LIQNEVRIREIIKEEEASFGKTLLKGIEKFKKAAQEVQGKVSCLQD--AFVLWDTYGFPL 496 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ Q + RGL +D+ FN A++E R R+R + Sbjct: 497 DLTQLMAEERGL-WVDVEGFNNAMDEARERSR---------------------NAQNKQA 534 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQ 509 G D++ M D K + +T+ S++KAI E + S Sbjct: 535 GGDII-----MDADATSALHKKGVSVTDDSYKFIWFQDHESVIKAIYTGTEFLGSTTSSN 589 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 +V +V + T FYAE GGQ+ DTG G Q+++VQ G VH + R R + Sbjct: 590 EVGIVLESTSFYAEQGGQIFDTGSLEGTFGSFQVSNVQIFG-GFVVHIGSLTRAAPRLSV 648 Query: 570 --SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 ++ +DY R ++ NH+ TH+L+ AL +LG+HV Q GS + P+ LRFD +H KP+ Sbjct: 649 GDKVICKVDYDRRTLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPV 708 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV----- 681 A L+ IE VN+ I L V + +A +G A+ G Y D VRVV++ Sbjct: 709 DPALLRKIESIVNEQIKAELEVSAKEATLSEAKRINGLRAVFGEVYPDPVRVVAIGRKVE 768 Query: 682 ------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---- 731 E ++ S+ LCGGTH+S+T E ++SE I G+RRI A+T A Sbjct: 769 DLLADPENKEWSSISAELCGGTHISNTKEAKAFALLSEEGIAKGVRRITAVTTDGAFKAM 828 Query: 732 -RSHLMGQ--DEKLKSLASFLKVSQGNVVGRVEE-----------------IWEEYRKLQ 771 + L+ Q DE K+ S L+ ++ RV+ + +E RK Q Sbjct: 829 ELASLLEQEADEISKTEGSLLEKKVASLKSRVDSAPIPAAKKFDIRTKISALQDEVRKAQ 888 Query: 772 LIHAKRKLQLNVE-DLSCHKIADVNFMSHIISEVD-----SKELKSVMDALQKKIQSGII 825 ++ +Q V+ ++A IS VD + ++V LQKK S ++ Sbjct: 889 KKISEENMQKAVKIATEMAEVAASEGKQFCISRVDVGLDAAAVREAVSKVLQKKGLSAMV 948 Query: 826 MLVGISKEKKASVLIVVTE--DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGN 883 + K V V E D + + + K L G G G+ +A G G Sbjct: 949 FSID-ETTNKVVVCAGVAEKGDKSKQLEVSEWLTAALKPLNGRCGKGKGGLATGQGTEGV 1007 Query: 884 KADQAIAGVASF 895 D A+ A F Sbjct: 1008 HLDAAMNLAAEF 1019 >gi|258538952|ref|YP_003173451.1| alanyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705] gi|257150628|emb|CAR89600.1| Alanyl-tRNA synthetase [Lactobacillus rhamnosus Lc 705] Length = 710 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 288/740 (38%), Positives = 418/740 (56%), Gaps = 64/740 (8%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS IR FL+FF+ GH + PS+SLIP +DPTL++ NSG+ K F G P Sbjct: 1 MKKMSSGEIRQMFLDFFKSKGHAVEPSASLIPVDDPTLLWINSGVATLKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 +T QK +R ND++ VG+T RH TFFEMLGNFS G YFK+ I AW+LLT K Sbjct: 61 PRITNAQKSIRT----NDIELVGKTARHLTFFEMLGNFSVGDYFKKEVIPWAWELLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 FD D +RLY+TVY +D+ +LW+K+ G++ D I+ DNFW + E GP GP SEIF Sbjct: 117 WFDFDPKRLYVTVYPKDKGTKELWRKV-GVADDHIVE--AEDNFWDIGE-GPSGPDSEIF 172 Query: 177 FDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGM 228 +D+G+ P PG E RY+EIWN+VF + RF+ P +IDTGM Sbjct: 173 YDRGQSFNNVAEDDPENYPGG--ENSRYVEIWNIVFSELNHL-PDGRFVEQPHKNIDTGM 229 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFL 285 GLER+ V+Q ++ DLF +I+A+E+++ K G + V+ ++I DH R+ +F Sbjct: 230 GLERLVAVIQGTPTIFETDLFMPIIKATEKMSAGKRYGASAQDDVSFKIIADHARTVTFA 289 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG LP+NEGRGYVLRR++RRA+ + LG + L+P + M S YP+++ + Sbjct: 290 IGDGALPSNEGRGYVLRRLIRRAVLNGKKLGINHDFLYQLVPVVGEIMKSYYPQILANQP 349 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 I++ + SE+ RF +TLD G+ LL+ +++ L GK EI D AFKL+DT+G P+++ Sbjct: 350 FIQKVIESEEARFRQTLDAGVNLLNQIVAELKQNGKKEISGAD-AFKLFDTYGFPVEMTN 408 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 + GL +D+ F + + QR RAR ++ G+ + D+ Sbjct: 409 EYAEDEGLK-VDMAGFKKNMAAQRDRARKAR-------------GDRQSMGSQDTVLMDI 454 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 SKF L K + ++AIV ++ +E +GQ +++FD+TPFYA Sbjct: 455 TTPSKFTGWTE--LDHK---------HATLQAIVVDDQLQDEVSTGQ-AQLIFDETPFYA 502 Query: 523 EAGGQLGDTGCAIG-DGIRL-QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNR 580 E GGQ+ D G DG L ++TDVQ G +H V +G L L++D R Sbjct: 503 EMGGQVADHGVIKAQDGTVLAEVTDVQHAPNGQNLHTVTV-KGKLTKGQPYWLSVDRLRR 561 Query: 581 RQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVN 640 +++S+NH+ATHLL AL +LG H Q GS + PD LRFD T+ +T +L+ +E VN Sbjct: 562 KKVSLNHTATHLLDQALRDVLGEHTHQAGSLVEPDYLRFDFTNFGQVTPKQLREVETIVN 621 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 I LP+ + M +A GA A+ G KY D VR+VS+ G ++ GGTH + Sbjct: 622 QKIWDALPITWKEMPIAEAKKLGAIAMFGDKYGDVVRIVSI-----GDYNKEFDGGTHPT 676 Query: 701 STGEIMLLYIVSESSIRAGI 720 +T + L I SES + G Sbjct: 677 NTNALGLFKITSESVLAQGF 696 >gi|322712022|gb|EFZ03595.1| alanyl-tRNA synthetase [Metarhizium anisopliae ARSEF 23] Length = 952 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 332/967 (34%), Positives = 505/967 (52%), Gaps = 102/967 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPV--YQAV 61 +R F ++ Q+ GH ++PS S++P +DPTL+FTN+GM FK IF G Q P+ + Sbjct: 11 VRKAFFDYMQQRGHTIVPSGSVVPYDDPTLLFTNAGMNQFKPIFLGTINQSDPMANLKRA 70 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QK +RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI++AW++LTK + LD Sbjct: 71 ADTQKVIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMAWEILTKVYGLD 130 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 +RLY T ++ D+EA +LW I G+ D+I+ DNFW M + GPCGP S Sbjct: 131 PKRLYATYFEGNKELGLPPDDEAKQLWLDI-GMPEDQIVPGDMKDNFWEMGDQGPCGPSS 189 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVFMQF++Q LP IDTGMG Sbjct: 190 EIHYDK----IGGRNAAHIVNQDDPMVVEIWNLVFMQFDRQKDGSLKPLPAKHIDTGMGF 245 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281 ERM + LQE +NY D F L + ++VTG+ KY ++ +RVI DH+R+ Sbjct: 246 ERMVSALQETDSNYATDCFTPLFKQIQEVTGVRPYSDKYGKDDADGIDTAYRVIADHIRT 305 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 SF I DG +P ++GRGYV+RRI+RR + YAR E +LPAL + MG +PE Sbjct: 306 LSFAITDGAVPNSDGRGYVIRRILRRGVRYARKYLNAEIGSFFSKILPALVSHMGDQFPE 365 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLP 397 L++ +L I+E L E+E F +TLDRG + + + L+GDV ++LYDT G P Sbjct: 366 LVKKQLDIKEILDEEEEAFARTLDRGEAQFEKYAAKAAKAGVKKLDGDVVWRLYDTFGFP 425 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ Q + RGL ID + A E+ R ++A + + F+ + + Q Sbjct: 426 VDLTQIMAEERGLE-IDESEVSVAKEKAREASKAVKASVDT-------FAKLDVHQIAQL 477 Query: 458 IGYDLLR---GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 + R +KF+K D K Q T S+ E+ E+ G ++ Sbjct: 478 DQQKVARTDDDAKFVKGDSKGKVQLIFDGKTFHNST--------KELPEKTAIG----IL 525 Query: 515 FDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+T FYAE+GGQ+ DTG I D + ++ DVQ G +H +E G L + ++ Sbjct: 526 LDKTNFYAESGGQVADTGRIVIDDVVEFKVMDVQNYG-GFILHSGYIEYGALSSGDEVIC 584 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+H+L +LG ++Q GS + + LRFD +H + EL+ Sbjct: 585 EYDELRRSPIRNNHTGTHVLNHSLREVLGDDINQKGSLVDNEKLRFDFSHKSQVKIEELR 644 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----------- 681 IE N+ I +N + ++ ++ + A G A+ G Y + VRVVS+ Sbjct: 645 KIETLSNEYIRRNSKIFSKDVDLDLARQIEGVRAVFGETYPNPVRVVSIGMDVDTMLKDP 704 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSHL 735 + ++ +S CGGTHV TG I L +V ES I GIRRI A TG QR + Sbjct: 705 KKQEWRQYSVEFCGGTHVEQTGLIKDLILVEESGIAKGIRRIIAYTGEAAHQVQREAAEF 764 Query: 736 MGQDEKLKSLA-SFLKVSQGNVVGR-----------VEEIWEEYRKLQL-IHAKRKLQLN 782 + + L+++ K +Q VV + +E+ ++K+ + A++K + Sbjct: 765 SKKLDILEAMPFGPAKDAQTKVVSQELSQLVISTLTKDELNTRFQKIATSVIAEQKKRQK 824 Query: 783 VE---DLSC-----HKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 E + C + DV+ F+ + ++K L V Q K ++ + + G S+E Sbjct: 825 AEAGAAVGCVIKHFEEKEDVDYFVGRLPISANAKALTEVFKHFQAKDKTKSVYIFGGSQE 884 Query: 834 KKASVL-IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 + A V + V L + A A + + V+GG GG P Q G D A+ Sbjct: 885 EGAVVHGVYVGSGLASKGVTAEQWASVVSDVVGGRSGGKEP-TRQGQGTKPENIDDAVEV 943 Query: 892 VASFLKK 898 +L++ Sbjct: 944 ARKWLEE 950 >gi|312215385|emb|CBX95337.1| similar to alanyl-tRNA synthetase [Leptosphaeria maculans] Length = 968 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 299/795 (37%), Positives = 434/795 (54%), Gaps = 71/795 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAV 61 +R TFL++F++ GH +PSSS++P +DPTL+FTN+GM +K IF G P + Sbjct: 15 VRQTFLDYFKERGHSFVPSSSVVPLSDPTLLFTNAGMNQYKAIFQGTIDPSSDFAQLKRA 74 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI W+LLTK + +D Sbjct: 75 TNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTKVYGID 134 Query: 122 QRRLYITVYDEDEE------AFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 +RLY+T ++ +E+ A +LWK + G+ D I+ DNFW M + GPCGPCSE+ Sbjct: 135 TKRLYVTYFEGNEDLEPDLKAKELWKSV-GVPEDHILPGDMKDNFWEMGDQGPCGPCSEV 193 Query: 176 FFDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +D E G ++ + IEIWN VFMQ+ ++ + LP IDTG+G E Sbjct: 194 HYDLREPEGGNYRNAASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTGLGYE 253 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSS 282 R+ +VLQ +NYD D+F L + ++VTG + Y G + +RV+ DH R Sbjct: 254 RLVSVLQHTKSNYDTDVFTPLFKRIQEVTGAREYRGGFGADDPDGIDTAYRVVADHTRMM 313 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPEL 340 SF IADG +P N GRGYV+RR++RR YAR E ++P L +MG +PE+ Sbjct: 314 SFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFEVEIGDFFSKIIPTLVDQMGDMFPEI 373 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLP 397 + + I E L E++ F K+LDRG V+ + G ++ L GD ++LYDT+G P Sbjct: 374 RKKQQDIIEILDEEEKAFAKSLDRGEVIFEKYAQKAKAKGSND-LPGDDVWRLYDTYGFP 432 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT-- 455 +D+ + + RGL D + +E+ + +AR S G +K GA Sbjct: 433 VDLTKLMAEERGLNIND-----KEVEKAQEKAREASKG-------------DKKAGAAVV 474 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVE 512 +F +DL G+ +D P N +++ +KAI + + +E G++ Sbjct: 475 KFDVHDL--GALDAMDDVPKTDDSPKYGREN-ITATIKAIYHNKQFLKSTKEVPEGEQFG 531 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 V+ D+T FYAE GGQ DTG + DG + I +VQ A G +H ++ G L+ + Sbjct: 532 VLLDKTNFYAEQGGQEYDTGRLLVDGEAEISIENVQVYA-GYVLHTGYLKYGELKVGSEV 590 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + D R + NH+ TH+L++AL +LG+ V Q GS + P+ LRFD +H ++ AE Sbjct: 591 IAEFDELRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFSHKAGLSDAE 650 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--EYED--- 685 ++ +E I + V + + A +G A+ G Y D VRVVSV ED Sbjct: 651 IEKVESISTTYIKADAKVYAKDVPLSKAKEITGVRAVFGETYPDPVRVVSVGQPVEDLLA 710 Query: 686 ------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 G S CGGTHV TGEI L I+ ES I GIRRI A+TGQ A + + Sbjct: 711 DPKNPAWGKLSVEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQEAYNVQRLAN 770 Query: 740 EKLKSLASFLKVSQG 754 + L SF K+ G Sbjct: 771 DFATRLESFGKMPFG 785 >gi|294932634|ref|XP_002780365.1| cytosolic tRNA-Ala synthetase, putative [Perkinsus marinus ATCC 50983] gi|239890298|gb|EER12160.1| cytosolic tRNA-Ala synthetase, putative [Perkinsus marinus ATCC 50983] Length = 982 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 335/972 (34%), Positives = 495/972 (50%), Gaps = 108/972 (11%) Query: 1 MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKP 56 +S+ S +R TF+ FF +K G L SS ++P NDPTL+F N+GM FK IF GQ + P Sbjct: 24 LSDPSVVRDTFINFFVEKKGATFLKSSPVVPHNDPTLLFINAGMNQFKPIFLGQLDKDHP 83 Query: 57 VY--QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114 Y + T QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG +FK I AW+LL Sbjct: 84 FYGVKRATNTQKCIRAGGKHNDLEDVGKDTYHHTFFEMLGNWSFGDFFKAEQIPWAWELL 143 Query: 115 TKEFDLDQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 T+ F LD RLY T Y D+EA LW K L D +I +NFW M + Sbjct: 144 TEVFGLDPARLYATYYGGDPKEPEVPADDEARDLWLKF--LPPDHVIPFGMKENFWEMGD 201 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKM 222 TGPCGPCSEI +D GG S+ + IEIWNLVFMQ+ ++N LP Sbjct: 202 TGPCGPCSEIHYDN----VGGRDASALVNMDDPTVIEIWNLVFMQYNRENDGSLTRLPHP 257 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA-SEQVTGMK-YEG---NNI-VNHRVIV 276 +DTGMG ER+ L KT+NYD D+FK + A EQ+ G++ Y G +NI V +RV+ Sbjct: 258 CVDTGMGFERICAALTGKTSNYDTDVFKPIFAAIQEQIPGLRSYTGELTDNIDVGYRVVA 317 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGS 335 DH+R+ + ++DG +P+NEGRGYVLRRI+RRA+ Y L L+PA+ +G Sbjct: 318 DHIRTLTVALSDGAVPSNEGRGYVLRRILRRAVRYGTEKLNAPAGFFNKLVPAVVESLGE 377 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE++ + ++ + E+E+F +TL+RG+ + S + ++L+G AF+L+ T G Sbjct: 378 AFPEIVANQADVQALIADEEEQFARTLERGIREFNSRASKT-EGKVLSGRDAFELFTTFG 436 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-------AHSLGLGSGTTEKIWFSL 448 P D+ Q + RG+ +D+ SF + E R +++ +L L + T + L Sbjct: 437 FPCDLTQVMAQERGMT-VDVQSFEEEFEAFRQKSKESNNFTMGSNLQLFADQTNYLENEL 495 Query: 449 K-EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS 507 K K T +D +G + LC + +G + V+ G + Sbjct: 496 KVPKTDETCKYAWDSAKGEGGQWSSQ--LCA-----IWDGKKWLDTIDVKSG------YA 542 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGI- 564 + + +V TPFYAE GGQ+ D G + G R + + QK + + +H ++ + Sbjct: 543 QKTIGLVLSVTPFYAEQGGQIFDVGTIVDPLTGARFDVKNTQKFGQYV-LHIGSMDSAVD 601 Query: 565 --LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622 L+ + ++DYQ R ++ NH+ATH+L+ AL +LG Q GS + P LRFD Sbjct: 602 AALKVGSEVRASVDYQRRALIAKNHTATHILNFALRQVLGDKCDQRGSLVDPSRLRFDFA 661 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV 681 +KPIT+ +LK IE N I ++L V + A G A+ G Y D VRVVSV Sbjct: 662 QNKPITNEQLKEIEQICNQQIQKHLNVFANDVQLAKAKDIRGLRAVFGETYPDPVRVVSV 721 Query: 682 -----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 E + G S CGGTHV ++ EI I +E I GIRRI A TG + Sbjct: 722 GEAIDTLLKETEVDFGHEFSIEFCGGTHVGNSQEIFKFVITAEEGIAKGIRRIVAATGPQ 781 Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNV----VGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786 A + L + K +G V + ++ E +++ L AK+ + ++DL Sbjct: 782 AAVEASIKTTDLMEELNSAKALKGEVLDHAIAQLRNKLNEEKEVSLT-AKKDMLCLLDDL 840 Query: 787 SCH-----------------KIADVNFMSHIISE------------VDSKELKSVMDALQ 817 KI + S SE D+K +++ +D++ Sbjct: 841 KTQQIKEEKKKAKEVQKQAAKIGEQLAESIGASEGKFLITQCDELLADAKAMQNAVDSIA 900 Query: 818 KKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 KK+ + +V S K A VLI V + + + +A + + + GG GGG P AQ Sbjct: 901 KKLPELPVCIVSASSSKLA-VLITVPKSMSKKVSAKEWLNVCLETCGGKGGGS-PMKAQG 958 Query: 878 GGPNGNKADQAI 889 +K + I Sbjct: 959 QSQEPSKVAETI 970 >gi|329946643|ref|ZP_08294055.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386] gi|328526454|gb|EGF53467.1| alanine--tRNA ligase [Actinomyces sp. oral taxon 170 str. F0386] Length = 903 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 326/941 (34%), Positives = 499/941 (53%), Gaps = 88/941 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR+ +L++F N HE+ PS SL+ +P+++FT +GMVPF G E+ + + Sbjct: 3 TSEIRSRWLDYFAANKHEIRPSVSLV-SPEPSILFTVAGMVPFIPYILGTEEAPWPRAAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKC+R ND+DNVG T RH TFF+M GNFSFG YFKE AI AW LLT + Sbjct: 62 VQKCIRT----NDIDNVGVTTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RL++T++++D+ + W + G+ A++I + D WS + GP G C EI +D Sbjct: 118 GLDGDRLWMTIWEKDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIHYD 177 Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQF-EQQNKQERF----ILPKMSIDTGMGLER 232 +G P G P +G+R++EIWNLVF +F + K F L + +IDTG GLER Sbjct: 178 RGPAYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRS 281 +A ++Q+K N Y+ID +I+A+E+++G Y ++ V RV+ DH+RS Sbjct: 238 LAFIMQDKPNMYEIDEVFPVIRAAEELSGKVYGRGSAGPEAGDAYHDDVRMRVVADHVRS 297 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LI+DG+ P N+GRGYVLRR++RRA+ RLLG E M LL M ++YPEL Sbjct: 298 ALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKASYPELE 357 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHG 395 + I E E++ F +TL G +LD ++ KD +++G AF+L+DT+G Sbjct: 358 TSWSAISEIAFGEEDAFRRTLTAGTTILDTAVASAKKDAGRTGRPLMSGRSAFELHDTYG 417 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSL-KEKYG 453 P+D+ ++ +G+ +D +F + EQ+ RARA + +G + +++ L KE G Sbjct: 418 FPIDLTLEMAAEQGV-DVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEMGG 476 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 + F+GY + + V ++ G S +VEV Sbjct: 477 GSAFLGY-----------------------TESSAEASVAGVLVDGVPQSVVTSPAEVEV 513 Query: 514 VFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+TPFYAE GGQL D G + DG +++ DVQ +G+ VH + G + Sbjct: 514 ILDRTPFYAEMGGQLADQGTIRLADGGTVEVNDVQAPVKGLHVHRGTLTEGTIAVGEKAF 573 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 ID R ++ H++TH++H AL I+ + +Q GS +P +RFD H + ++ Sbjct: 574 AQIDVARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALAGEQV 633 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 IE+ VN ++++L V +M+ + A A+GA AL G KY VRVVS+ GG S Sbjct: 634 AGIEERVNAKLSEDLTVTDEVMDIDAARAAGAMALFGEKYGKEVRVVSI----GGDWSKE 689 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LC GTHV +TG I + +V ESSI +G+RRI+A+ G A G K +L S + Sbjct: 690 LCAGTHVPTTGHIGRIAVVGESSIGSGVRRIDALVGDGA----YGYQAKEHALVSQISTM 745 Query: 753 QGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV--DSKE 808 G GR EE+ E L +L A+++L + + A + + + EV S Sbjct: 746 VG---GRPEELPERVESLMTRLKDAEKRLAAAEQAALSARTAGIVSDAVPVGEVRLASAN 802 Query: 809 LKSV----------MDALQKKIQS-GIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLA 856 L SV +DA + S ++ VG + +++ D+ A L Sbjct: 803 LGSVGAADAVRSLTLDARSRLGDSEPAVVAVGAVLNSRPVIVVATNAGARDKGIRAGALV 862 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 R +A+VL GGGGG+ +AQ GG N + D+A+ VA ++ Sbjct: 863 RTAAQVL-DGGGGGKDDLAQGGGQNPDALDEALRTVADQIR 902 >gi|308235922|ref|ZP_07666659.1| alanyl-tRNA synthetase [Gardnerella vaginalis ATCC 14018] Length = 894 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 333/932 (35%), Positives = 501/932 (53%), Gaps = 79/932 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I +L++F +GH ++PS+SLI N PT +FT +GMVPF G++ P + +T+ Sbjct: 3 TAEIAKRYLDYFGNHGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMTS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+M+GNFSFG YFKE AI AW+LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T Y +D+EA +WK G + + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWVTTYTDDDEARAIWKN-EGFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232 +G G G + + R+IEIW+LVF F+ N + + L + +IDTG GLER Sbjct: 177 RGPKY-GNDGGPAADESRFIEIWDLVFENFQVDNVKSKTDLHIVGELDQKNIDTGAGLER 235 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290 +A ++Q K N Y+ D +I+A+E+++G+KY NN V RV+ DH+RS+ +++DG+ Sbjct: 236 LAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSDGV 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N GRGYVLRR++RR + R+LG +P++ L P M +YPEL + E Sbjct: 296 RPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNNTFHEVSEA 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E++ F +TL++G +LD + K D I+ G AF L+DT+G P+++ ++ Sbjct: 356 AYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEMAA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D F + + EQ+ RARA +L ++ +K++ F+GY Sbjct: 416 EQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKELEKPIDFLGY----- 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEA 524 D ++ S V AIV+ G+ ++VS VEV+ D+TPFYAE+ Sbjct: 470 ----------------TDFSS--RSNVLAIVEAGKGAVKSVSAPANVEVILDRTPFYAES 511 Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+ D G I D G L++ DVQ+ + + VH + G L + ID R L Sbjct: 512 GGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRAAL 571 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH LH AL LG +Q GS + PD LRFD K + L +E VN+ I Sbjct: 572 ARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALLRVEARVNERI 631 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +L VV + M +DA GA L G KY D VRVV + G S LCGGTH STG Sbjct: 632 RDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDIVRVVEI----GDGWSRELCGGTHAKSTG 687 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I ++ I+SESSI +G+RRI+A+ G+ A + + + LA + + R+E + Sbjct: 688 KIGMVTILSESSIGSGVRRIDALCGEEAYEYGAREHALVAQLAGMVNARPDELAERLESL 747 Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MDALQ 817 + RKL ++ QLN + ++ + S ++ K + + DAL+ Sbjct: 748 LNKMKDSDRKLSSVYES---QLND---AVPELVEAAKQSGATVKLAVKNVGNFGSFDALR 801 Query: 818 KKI----------QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGG 866 K I+ L G+++E + V + + D A DL R ++KVL GG Sbjct: 802 KTTLDVRSRLGEDTPVIVALCGVNEEDRPMVAVATNDAARDLGAKAGDLVRTASKVL-GG 860 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGG+P AQ GG + +K D+A+ V S + K Sbjct: 861 GGGGKPDFAQGGGTDASKIDEALDAVKSEVAK 892 >gi|300121464|emb|CBK21983.2| unnamed protein product [Blastocystis hominis] Length = 935 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 321/957 (33%), Positives = 479/957 (50%), Gaps = 100/957 (10%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQ 59 + +R TF+EFF++ GH + SS ++P +DPTL+F N+GM +K IF GQ P + Sbjct: 12 AKVRQTFIEFFEERGHTFVKSSPVVPLDDPTLLFANAGMNQYKPIFLGQVDPSSPLAKLK 71 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLTK + Sbjct: 72 RACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEGAINFAWELLTKVYK 131 Query: 120 LDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 LD RLY T ++ DEEA+ +W+ + L D I++ +DNFW M E GPCGP Sbjct: 132 LDPSRLYATYFEGSEEDGVPCDEEAYAIWR--THLPDDHILKGNKHDNFWEMGEVGPCGP 189 Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ GG + +++ +EIWNLVFMQF + + LP +DTGM Sbjct: 190 CSEIHYDR----IGGRNAADLVNKDDPNVLEIWNLVFMQFSRDSTGALHPLPAKHVDTGM 245 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG--------NNIVNHRVIVDHL 279 G ER+ ++LQ K +NYD D+F L +A V+G+ +Y G + +RV+ DH+ Sbjct: 246 GFERITSILQNKMSNYDTDVFLPLFKAIHAVSGVSEYTGLVAGQNGAQKDMAYRVVADHI 305 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYP 338 R+ + I DG P+N GRGYVLRRI+RR + Y + + +P L+P + M SA+P Sbjct: 306 RTLTMAITDGAAPSNTGRGYVLRRILRRGVRYGQQILKCKPGFFSQLVPTVVENMKSAFP 365 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLL--DGVLSHLGKDEILNGDVAFKLYDTHGL 396 EL + ++E + E+ F +TL++GL + +++ GDVAF LY T G Sbjct: 366 ELEEKMCFVQEVILDEELSFNRTLEKGLKRFAQEAEACQASGAKVITGDVAFFLYGTLGF 425 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL +D+ FNQA+E R A+ + +K GA Q Sbjct: 426 PIDLTELMAEEAGLK-VDMEGFNQAIERARMEAKTN-----------------KKNGAEQ 467 Query: 457 -FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK--VEV 513 + + + S K V P + S V A + E ++ + V V Sbjct: 468 TTLVMEAEQVSHLQKSGVPVTDDLPKYTWFETLESEVVAFYGADKSFPEQIAPESGVVGV 527 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 V QTPFYAE+ GQ+ D G G + V G +H +VE+G LR ++ Sbjct: 528 VLKQTPFYAESEGQIADRGSLSGANGSFSVQQVLSYG-GYVLHIGVVEQGTLRLHDAVTC 586 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ++DY R ++ NH+ TH+++ AL +L + V Q GS + LRFD H+K ++ A+L Sbjct: 587 SVDYDYRLLIAPNHTLTHVMNWALRRVLQTEVDQKGSLVDDQKLRFDFNHTKAVSPAQLS 646 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDA--IASGAAAL--LGTKYNDRVRVVSVEYEDGGVH 689 IE VN+ + L V T++ ++A I S A G N R SVE+ Sbjct: 647 EIERLVNEKVHDALKVFTKVCPIDEARKICSLRAVFGEAGYPSNPRWMDYSVEF------ 700 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE--------- 740 CGGTH+S+ + IV E SI GIRRI AITG RA ++ ++ Sbjct: 701 ----CGGTHLSNLAQAKFFAIVEEGSISKGIRRIVAITGDRANESIVLANQIDGMLSHAR 756 Query: 741 -----KLKSLASFLKVSQGNVVGRV---EEIWEEYRKLQ-LIHAKRKLQLNVEDLSC--- 788 +L++ + L+ + V V EE +KL+ + A+RK Q+ + S Sbjct: 757 SLHGKELEAAVAELQQTIPTAVISVATKATFKEELKKLEKTMMAERKEQIAKQLESAIAE 816 Query: 789 --------HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 + + + + + +DS +M +++ + + K A + Sbjct: 817 AEKVVKEVKEKQEGGRVFYTVEGIDSSNASKLMQKIRELDSESSYFIFSVDTAKVAMYAL 876 Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 V E F+A A V GG GGG P AQ + + + A A LK Sbjct: 877 VAKEKASKTFSAKTWISEVAAVCGGKGGGS-PMQAQGQSKDPSNVEAAFAKAEEILK 932 >gi|296454023|ref|YP_003661166.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum JDM301] gi|296183454|gb|ADH00336.1| alanyl-tRNA synthetase [Bifidobacterium longum subsp. longum JDM301] Length = 871 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 331/902 (36%), Positives = 496/902 (54%), Gaps = 76/902 (8%) Query: 23 LPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGR 82 +PS+SLI N PT +FT +GMVPF G++ P + +T+ QKCVR D+D VG+ Sbjct: 1 MPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRMTSNQKCVRT----LDIDEVGK 55 Query: 83 TNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAF 137 T RH TFF+MLGNFS G YFKE AI AW+LLT + D +L++T + +DEEA Sbjct: 56 TTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQSEGGYGFDPEKLWVTTFTDDEEAR 115 Query: 138 KLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGER 196 +WK G + + DNFW+ GP GPCSEI+ D+G E G P + E R Sbjct: 116 SIWKN-EGFDPEHMQIFGMEDNFWTTGGPGPGGPCSEIYVDRGPEYGRDGGPAADET--R 172 Query: 197 YIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLERMATVLQEKTNNYDIDLFK 250 +IEIW+LVF +E N + + L + +IDTG GLER+A ++Q K N Y+ D Sbjct: 173 FIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNIDTGAGLERLAYLMQGKQNIYETDEVF 232 Query: 251 HLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308 +I+A+E+++G KY + V RV+ DH+RS+ +++DG+ P+N GRGYVLRR++RR Sbjct: 233 PVIEAAERLSGRKYGEDEAADVKFRVVADHVRSALMIMSDGVRPSNVGRGYVLRRLLRRT 292 Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368 + R+LG T+P++ LLP M ++YPEL + E E++ F +TL+ G+ + Sbjct: 293 VQAMRVLGVTDPVIPELLPVSKEAMVASYPELNDTFHDVSEAAYGEEDAFRRTLENGIEI 352 Query: 369 LDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQR 426 LD + K D +++G AF L+DT+G P+++ ++ +G+ +D F + + EQ+ Sbjct: 353 LDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIELTLEMAADQGVK-VDEAKFRELMAEQK 411 Query: 427 SRARAHSLGLGSGTTEKIWFSLKEK-YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 SRARA +L ++ K+ F+GY D++ Sbjct: 412 SRARADALKKRHNVDLSVYDDFKKTLVSPIDFLGY---------------------TDMS 450 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEAGGQLGDTGCAIGD-GIRLQI 543 + V I+Q+G+ AV+G VEV+ D+TPFYAEAGGQL D G + D G L++ Sbjct: 451 --ARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGGQLADQGEILSDDGAVLEV 508 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 DVQK + + VH + G L + ID R ++ +H+ATH++H AL LG Sbjct: 509 DDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIARSHTATHMVHKALREELGP 568 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 +Q GS P+ LRFD SK + + ++E+ VND + NL V T+ M +DAIA G Sbjct: 569 QATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRDNLAVTTKEMKFDDAIALG 628 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A L G KY D VRVVS+ EDG S LCGGTHV G+I ++ I+SE+SI +G+RR+ Sbjct: 629 AMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHVDHVGKIGMVNILSEASIGSGVRRV 685 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLIHAKRKL 779 +A+ GQ A + + L+ L + RV ++ E R+L ++ + +L Sbjct: 686 DAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNALLAKLKESDRRLASMY-ESQL 744 Query: 780 QLNVEDLSCHKIADV-NFMSHIISEVDSKELKSVMDALQKKI-----QSG-----IIMLV 828 +V L +AD N + + V + +DAL+K + Q G ++ L Sbjct: 745 AASVPAL----VADTKNSAAPVKVAVKNVGHFGAVDALRKTVLDVRAQLGEDAPVVVALA 800 Query: 829 GISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 G++++ K V + E A DL R +AKVL GGGGGG+P AQ GG + +K + Sbjct: 801 GVNEDDKPMVAVATNEAARKAGIKAGDLVRGAAKVL-GGGGGGKPDFAQGGGVDASKIGE 859 Query: 888 AI 889 A+ Sbjct: 860 AL 861 >gi|57524852|ref|NP_001005836.1| alanyl-tRNA synthetase, cytoplasmic [Gallus gallus] gi|53131091|emb|CAG31790.1| hypothetical protein RCJMB04_11d4 [Gallus gallus] Length = 913 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 313/861 (36%), Positives = 457/861 (53%), Gaps = 87/861 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SSS IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASQIRQRFIDFFKENQHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A +LA DLLTKE Sbjct: 66 LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + +E E ++W + GL+ +I+ DNFW M +TGPC Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLAEGRILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPCSEI +D+ G+ L +++ +EIWNLVF+QF ++ LPK SIDTGM Sbjct: 185 GPCSEIHYDRIGDRDASHL--VNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGM 242 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHL 279 GLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH Sbjct: 243 GLERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYMGQVGAEDADGIDMAYRVLADHA 302 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + ++DG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+P Sbjct: 303 RTITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFP 362 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL + ++++ + E+++F KTL RG +LD + +G + + GD A+ LYDT+G P+ Sbjct: 363 ELKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSMGDSKTIPGDTAWLLYDTYGFPV 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ I +GL +D+ F EE+R A+ S G G+G + + + Y + Sbjct: 423 DLTGLIAEEKGLV-VDMEGF----EEERKNAQLKSQGKGAGGEDLLMLDI---YAIEELR 474 Query: 459 GYDLLRGSKFMKEDRKVLCQKPP---IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 RG + + K P D + V++ VKAI ++ + VEE +GQ+ +V Sbjct: 475 A----RGLEVTDDSPKYGYTSDPSGTYDFGSLVAT-VKAIRREKKFVEEVSTGQECGIVL 529 Query: 516 DQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 D+T FYAE GGQ+ D G + D + + T + G +V H G L+ + Sbjct: 530 DRTCFYAEQGGQIYDQGYMVKDDDSKEDKTEFTVKNVQVRGGYVLHIGTLYGSLKVGDQV 589 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L+ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ E Sbjct: 590 HLSIDETRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGALSTQE 648 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--------- 681 +K +E N +I + PV R A A G A+ Y D VRVVS+ Sbjct: 649 IKKVEGIANQMIEEAKPVYARDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVEELLA 708 Query: 682 --EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 G + S CGGTH+ ++G IVSE +I GIRRI A+TG AR Sbjct: 709 DPSGPAGSITSIEFCGGTHLQNSGHAGPFVIVSEEAIAKGIRRIVAVTGAEAR------- 761 Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFM-- 797 + L+ + S KV L + AK K+Q +I D++ M Sbjct: 762 KALRKVESLKKV------------------LSALDAKVKVQTAPNKDVQKEITDLSEMLA 803 Query: 798 SHIISEVDSKELKSVMDALQK 818 + +I + EL+ + AL+K Sbjct: 804 TAVIPQWQKDELREAVKALKK 824 >gi|240278873|gb|EER42379.1| alanyl-tRNA synthetase [Ajellomyces capsulatus H143] Length = 961 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 336/986 (34%), Positives = 496/986 (50%), Gaps = 137/986 (13%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P T Sbjct: 17 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76 Query: 63 -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+ Sbjct: 77 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW + G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ G S +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 196 EIHYDR----IGARNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGY 251 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ ++LQ K++NYD D+F L + ++TG + Y G + I +RV+ DH+R+ Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRT 311 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 312 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPE 371 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGL 396 + + + + E L E+ F KTLDRG L + G ++ DV ++LYDT G Sbjct: 372 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGSGKLHGADV-WRLYDTFGF 430 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL ID N EE R +++ S G G T + + ++ + G + Sbjct: 431 PVDLTRLMAEERGLT-ID----NAEFEEARLKSKEASKGQGKRTADVVKLTVHD-LGLLE 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513 + D+ + + K R ++S +KAI + V+ + G++ + Sbjct: 485 TMD-DVPKTNDDAKFGR------------GNITSQIKAIYYNKKFVDSTKDIPQGEQFGI 531 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG I DG L + DVQ G +H ++ G S++ Sbjct: 532 ILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSFNVNDSVI 590 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H ++ ++L Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDL 650 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED--GG 687 + IE D I QN V + + A SG A+ G Y D VRVVS VE E+ Sbjct: 651 EKIERISTDYIRQNCAVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQN 710 Query: 688 VH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 VH S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A E Sbjct: 711 VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKE 770 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800 + L F K+ G + I AK LQ+++ LS + F Sbjct: 771 FGERLRRFEKMELG--------------PQKEIEAKL-LQVDLNQLSISAVEKARFREQ- 814 Query: 801 ISEVDSK-----------ELKSVMDAL-------QKKIQSGIIMLVGISKEKKA--SVLI 840 +++ K E K +DA+ + K+ S ++M + IS KA L Sbjct: 815 FAQIHKKVLEGQKAAQKLESKKALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLN 874 Query: 841 VVTEDLLDRFNAV----------------------------DLARLSAKVLGGGGGGGRP 872 V + D+ V D A + ++GG GG P Sbjct: 875 FVKTKMQDKSVYVFAADKEAGKVVHGCHVAQSLSEQGATPNDWANAVSSIVGGRAGGKAP 934 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 ++ G K D+AI +L+K Sbjct: 935 -ISIGNGTEAEKLDEAIKAATEYLEK 959 >gi|189203303|ref|XP_001937987.1| alanyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985086|gb|EDU50574.1| alanyl-tRNA synthetase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 966 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 290/781 (37%), Positives = 426/781 (54%), Gaps = 81/781 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 + + +R TFL++F++ GH +PSSS++P +DPTL+FTN+GM +K+IF G P Sbjct: 11 SAARVRQTFLDYFKERGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFAQ 70 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI W+LLT Sbjct: 71 LKRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTGV 130 Query: 118 FDLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 + +D +RLY+T + + D EA +LWK + G+ D I+ DNFW M + GPCGP Sbjct: 131 YGIDPQRLYVTYFEGADGLEPDLEAKELWKSV-GVPEDHILPGDMKDNFWEMGDQGPCGP 189 Query: 172 CSEIFFDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CSE+ +D E G ++ + IEIWN VFMQ+ ++ + LP IDTG Sbjct: 190 CSEVHYDLREPEGGKYRNAASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTG 249 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278 MG ER+ +VLQ K +NYD D+F L + +++TG + Y G + I +RV+ DH Sbjct: 250 MGYERLVSVLQHKKSNYDTDVFTPLFKKIQEITGAREYRGKFGAEDPDGIDTAYRVVADH 309 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336 +R SF IADG +P N GRGYV+RR++RR YAR T+ ++P L +MG Sbjct: 310 VRMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFETDIGDFFSKIVPTLVEQMGDM 369 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394 +PE+ + + I E L E++ F K+LDRG V+ + + + + L GD ++LYDT+ Sbjct: 370 FPEIKKKQQDIVEILDEEEKAFAKSLDRGEVIFEKYAQKAKVKGSDALPGDDVWRLYDTY 429 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + RGL ID ++ +EE + +AR S G +K A Sbjct: 430 GFPVDLTKLMAEERGLK-ID----DKEVEEAQEKAREASKG--------------DKKAA 470 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN--------GVSSIVKAIVQQGEIV---E 503 + +D+ D L P + T+ ++S++KAI + + + Sbjct: 471 GALVKFDV--------HDLGALENMPDVPKTDDSAKYGRENITSVIKAIYHNKKFLKSTK 522 Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVER 562 E G++ V+ D+T FYAE GGQ D G + DG + IT+VQ A G +H ++ Sbjct: 523 EVPEGEQFGVLLDRTNFYAEQGGQEYDMGKLVVDGEACIDITNVQVYA-GYVLHTGYLQD 581 Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622 G L ++ D R + NH+ TH+L++AL +LG+ V Q GS + P+ LRFD + Sbjct: 582 GELSVGSEVIAEFDESRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFS 641 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR---- 677 H ++ AEL +E + I ++ V + + A G A+ G Y D VR Sbjct: 642 HKAGLSEAELDKVESISSKYIKEDAKVYAKDVPLASAKEIRGVRAVFGETYPDPVRVVSV 701 Query: 678 -------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 + V+ E S CGGTHV TGEI L I+ ES I GIRRI A+TGQ Sbjct: 702 GVPVEELLADVKNEKWEKLSIEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQE 761 Query: 731 A 731 A Sbjct: 762 A 762 >gi|326773292|ref|ZP_08232575.1| alanine--tRNA ligase [Actinomyces viscosus C505] gi|326636522|gb|EGE37425.1| alanine--tRNA ligase [Actinomyces viscosus C505] Length = 903 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 299/809 (36%), Positives = 449/809 (55%), Gaps = 73/809 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR+ +L++F N HE+ PS SL+ +P+++FT +GMVPF G E+ + + Sbjct: 3 TSEIRSRWLDYFAANEHEIRPSVSLV-SPEPSILFTVAGMVPFIPYILGTEEAPWPRAAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKC+R ND+DNVG T RH TFF+M GNFSFG YFKE AI AW LLT + Sbjct: 62 VQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RL++T+++ED+ + W + G+ A++I + D WS + GP G C EI +D Sbjct: 118 SLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIHYD 177 Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQF-EQQNKQERF----ILPKMSIDTGMGLER 232 +G P G P +G+R++EIWNLVF +F + K F L + +IDTG GLER Sbjct: 178 RGPAYGPDGGPAVDTQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRS 281 +A ++Q+K N Y+ID +I+A+E+++G Y ++ V RV+ DH+RS Sbjct: 238 LAFIMQDKPNMYEIDEVFPVIKAAEELSGKAYGRGSAGPEAGEAYHDDVRMRVVADHVRS 297 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LI DG+ P N+GRGYVLRR++RRA+ RLLG E M LL M S+YPEL Sbjct: 298 ALMLICDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKSSYPELE 357 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHG 395 I E E++ F +TL G +LD ++ K+ +++G AF+L+DT+G Sbjct: 358 TGWSTISEVAYGEEDAFRRTLAAGTTILDTAVASAKKEAGRSGRPLVSGKSAFELHDTYG 417 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSL-KEKYG 453 P+D+ ++ +G+ +D +F + EQ+ RARA + +G + +++ L KE G Sbjct: 418 FPIDLTLEMAAEQGV-DVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEMGG 476 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 + F+GY + D T V+ I+ V Q + A +VEV Sbjct: 477 GSTFLGY-----------------TESSADAT--VTGILVDGVPQSVVTAPA----EVEV 513 Query: 514 VFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 V D+TPF+AE GGQL D G + DG +++ DVQ +G+ VH + G + Sbjct: 514 VLDRTPFWAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRGTLTEGTIAVGEKAF 573 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 ID R ++ H++TH++H AL I+ + +Q GS +P +RFD H + S ++ Sbjct: 574 AQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALASDQI 633 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 IE+ VN+ ++++L V +M+ + A A+GA AL G KY +VRVVS+ GG S Sbjct: 634 SGIEERVNNRLSEDLAVTDEVMDIDAARAAGAMALFGEKYGKQVRVVSI----GGDWSKE 689 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LC GTHV STG I + ++ ESSI +G+RRI+A+ G+ A G K +L S L Sbjct: 690 LCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGA----YGYQAKEHALVSQLSTM 745 Query: 753 QGNVVGRVEEIWEEYRKL--QLIHAKRKL 779 G GR E++ E L +L A+++L Sbjct: 746 VG---GRPEDLPERVESLMTRLKDAEKRL 771 >gi|313471806|sp|Q5AQL1|SYA_EMENI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|259486703|tpe|CBF84773.1| TPA: alanyl-tRNA synthetase, putative (AFU_orthologue; AFUA_8G03880) [Aspergillus nidulans FGSC A4] Length = 961 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 291/771 (37%), Positives = 424/771 (54%), Gaps = 72/771 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL++FQ GH + SS + P +DPTL+FTN+GM FK+IF G P ++ Sbjct: 16 VRDTFLQYFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQLKSA 75 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLT+ + LD Sbjct: 76 VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQYSWELLTQVYGLD 135 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA LWK + G+ D I+ DNFW M + GPCGPCS Sbjct: 136 PGRLYVTYFEGNKEGGLQPDLEAKALWKAV-GVPEDHILPGNMKDNFWEMGDQGPCGPCS 194 Query: 174 EIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG +S ++ +EIWN VF+Q+ ++N LP +DTGMG Sbjct: 195 EIHYDR----IGGRNAASLVNQDDPNVLEIWNNVFIQYNRENDGSLRSLPNKHVDTGMGF 250 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281 ER+ +VLQ+K++NYD D+F + Q + +TG + Y+G + +RV+ DH+R+ Sbjct: 251 ERLVSVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRFGTDDSDGIDTAYRVVADHVRT 310 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 F I+DG++P NEGRGYV+RR++RR YAR E ++P + ++G +PE Sbjct: 311 LMFAISDGVVPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTVVEQLGDMFPE 370 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 L Q + + E L E+ F KTLDRG + + D L+G ++LYDT G P Sbjct: 371 LKQKQQDVIEILNEEEISFAKTLDRGERQFEQYAQQAKTAGDHKLHGADVWRLYDTFGFP 430 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + + RGL ID ++ EE R +A+ S G TT G+ + Sbjct: 431 VDLTRIMAEERGLE-ID----DRQFEEARHKAKEASKGQKKTTT-----------GSVKL 474 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV----SGQKVEV 513 +DL + K + K I V++ +KAI G+ + +++ + Sbjct: 475 DVHDLGKLEKMNGVPKTDDSAKFEI---GNVTAQIKAIY-HGKTFHSSTQNLDDSEQIGI 530 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG + DG L++ DVQ+ A G +H ++ G + + +++ Sbjct: 531 ILDRTNFYAEQGGQENDTGRIVIDGQAELEVVDVQQYA-GYVLHTGYMKYGSFKVDDTVI 589 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+ AL +LG + Q GS ++ + LRFD +H P+T EL Sbjct: 590 CEYDELRRWPIRNNHTGTHILNFALRGVLGDGIEQKGSLVSAEKLRFDFSHKSPVTDVEL 649 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV--- 688 IED I +N V ++ + A +G A+ G Y D VRVVSV E + Sbjct: 650 VKIEDLSTQYIRRNCLVYSKEVPLSIARNIAGVRAVFGETYPDPVRVVSVGAELDEILKN 709 Query: 689 --------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 710 VEDPRWADFSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDA 760 >gi|311114977|ref|YP_003986198.1| alanine--tRNA ligase [Gardnerella vaginalis ATCC 14019] gi|310946471|gb|ADP39175.1| alanine--tRNA ligase [Gardnerella vaginalis ATCC 14019] Length = 894 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 333/932 (35%), Positives = 500/932 (53%), Gaps = 79/932 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I +L++F +GH ++PS+SLI N PT +FT +GMVPF G++ P + +T+ Sbjct: 3 TAEIAKRYLDYFGNHGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMTS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+M+GNFSFG YFKE AI AW+LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T Y +D+EA +WK G + + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWVTTYTDDDEARAIWKN-EGFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232 +G G G + + R+IEIW+LVF F+ N + + L + +IDTG GLER Sbjct: 177 RGPKY-GKDGGPAADESRFIEIWDLVFENFQVDNVKSKTDLHIVGELDQKNIDTGAGLER 235 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290 +A ++Q K N Y+ D +I+A+E+++G+KY NN V RV+ DH+RS+ +++DG+ Sbjct: 236 LAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSDGV 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N GRGYVLRR++RR + R+LG +P++ L P M +YPEL + E Sbjct: 296 RPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNNTFHEVSEA 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E++ F +TL++G +LD + K D I+ G AF L+DT+G P+++ ++ Sbjct: 356 AYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEMAA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D F + + EQ+ RARA +L ++ +K++ F+GY Sbjct: 416 EQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKELEKPIDFLGY----- 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEA 524 D ++ S V AIV+ G+ ++VS VEV+ D+TPFYAE Sbjct: 470 ----------------TDFSS--RSNVLAIVEAGKGAVKSVSAPANVEVILDRTPFYAER 511 Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+ D G I D G L++ DVQ+ + + VH + G L + ID R L Sbjct: 512 GGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRAAL 571 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH LH AL LG +Q GS + PD LRFD K + L +E VN+ I Sbjct: 572 ARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALLRVEARVNERI 631 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +L VV + M +DA GA L G KY D VRVV + G S LCGGTH STG Sbjct: 632 RDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDIVRVVEI----GDGWSRELCGGTHAKSTG 687 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I ++ I+SESSI +G+RRI+A+ G+ A + + + LA + + R+E + Sbjct: 688 KIGMVTILSESSIGSGVRRIDALCGEEAYEYGAREHALVAQLAGMVNARPDELAERLESL 747 Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV--MDALQ 817 + RKL ++ QLN + ++ + S ++ K + + DAL+ Sbjct: 748 LNKMKDSDRKLSSVYES---QLND---AVPELVEAAKQSGATVKLAVKNVGNFGSFDALR 801 Query: 818 KKI----------QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGG 866 K I+ L G+++E + V + + D A DL R ++KVL GG Sbjct: 802 KTTLDVRSRLGEDTPVIVALCGVNEEDRPMVAVATNDAARDLGAKAGDLVRTASKVL-GG 860 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGG+P AQ GG + +K D+A+ V S + K Sbjct: 861 GGGGKPDFAQGGGTDASKIDEALDAVKSEVAK 892 >gi|298253344|ref|ZP_06977136.1| alanyl-tRNA synthetase [Gardnerella vaginalis 5-1] gi|297532739|gb|EFH71625.1| alanyl-tRNA synthetase [Gardnerella vaginalis 5-1] Length = 894 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 334/941 (35%), Positives = 503/941 (53%), Gaps = 97/941 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I +L++F KNGH ++PS+SLI N PT +FT +GMVPF G++ P + + + Sbjct: 3 TAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+M+GNFSFG YFKE AI AW+LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTSPQDKGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T Y +D+EA +WK G + + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWVTTYTDDDEARAIWKN-EGFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232 +G G G + + R+IEIW+LVF ++ N + + L + +IDTG GLER Sbjct: 177 RGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGLER 235 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290 +A ++Q K N Y+ D +I+A+E+++G+KY NN V RV+ DH+RS+ +++DG+ Sbjct: 236 LAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSDGV 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N GRGYVLRR++RR + R+LG +P++ L P + M +YPEL + E Sbjct: 296 RPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKSAMEPSYPELNDTFHEVSEA 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E++ F +TL++G +LD + K D I+ G AF L+DT+G P+++ ++ Sbjct: 356 AYGEEDAFRRTLEKGTTILDFAVEKAKKEHKDDPIVGGSDAFTLHDTYGFPIELTLEMAA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D F + + EQ+ RARA +L ++ +K+ F+GY Sbjct: 416 EQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKALEKPIDFLGY----- 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ-KVEVVFDQTPFYAEA 524 D ++ S V AIV+ G+ ++VS VE++ D+TPFYAE Sbjct: 470 ----------------TDFSS--RSNVLAIVEAGKGSVKSVSAPANVEIILDRTPFYAER 511 Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+ D G I D G L++ DVQ+ + + VH + G L + ID R L Sbjct: 512 GGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRAAL 571 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH LH AL LG +Q GS + PD LRFD K + L +E VN+ I Sbjct: 572 ARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNERI 631 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +L VV + M +DA GA L G KY D VRVV + G S LCGGTH STG Sbjct: 632 RDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEI----GDGWSRELCGGTHAKSTG 687 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I ++ I+SESSI +G+RRI+A+ G+ A + + + LA + +V R+E + Sbjct: 688 KIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELVERLESL 747 Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKE-----LKSV- 812 + RKL ++ + QLN + ++ EV +S E LK+V Sbjct: 748 LNKMKDSDRKLASVY---EAQLN------------EAVPTLVDEVKNSNEKVKLALKNVG 792 Query: 813 ----MDALQKKI----------QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR 857 DAL+K + ++ L G++++ + + + E A DL R Sbjct: 793 NFGSFDALRKTVLDIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGLGAKAGDLVR 852 Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 ++KVL GGGGGG+P AQ GG + +K D+A+ S + K Sbjct: 853 TASKVL-GGGGGGKPDFAQGGGTDASKLDEALEAAKSEVAK 892 >gi|325090131|gb|EGC43441.1| alanyl-tRNA synthetase [Ajellomyces capsulatus H88] Length = 961 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 335/986 (33%), Positives = 497/986 (50%), Gaps = 137/986 (13%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P T Sbjct: 17 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76 Query: 63 -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+ Sbjct: 77 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW + G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ G S +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 196 EIHYDR----IGARNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGY 251 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ ++LQ K++NYD D+F L + ++TG + Y G + I +RV+ DH+R+ Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRT 311 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 312 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPE 371 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV---LSHLGKDEILNGDVAFKLYDTHGL 396 + + + + E L E+ F KTLDRG L + G ++ DV ++LYDT G Sbjct: 372 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGSGKLHGADV-WRLYDTFGF 430 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL ID N EE R +++ S G G T + + ++ + G + Sbjct: 431 PVDLTRLMAEERGLT-ID----NAEFEEARLKSKEASKGQGKRTADVVKLTVHD-LGLLE 484 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513 + D+ + + K R ++S +KAI + V+ + G++ + Sbjct: 485 TMD-DVPKTNDDAKFGR------------GNITSQIKAIYYNKKFVDSTKDIPQGEQFGI 531 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG I DG L + DVQ G +H ++ G S++ Sbjct: 532 ILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSFNVNDSVI 590 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H ++ ++L Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDL 650 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED--GG 687 + IE D I QN V + + A SG A+ G Y D VRVVS VE E+ Sbjct: 651 EKIERISTDYIRQNCVVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEILQN 710 Query: 688 VH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 VH S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A E Sbjct: 711 VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKE 770 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800 + L F K+ +G +EI + LQ+++ LS + F Sbjct: 771 FGERLRRFEKME----LGPQKEI-----------EAKLLQVDLNQLSISAVEKARFREQ- 814 Query: 801 ISEVDSK-----------ELKSVMDAL-------QKKIQSGIIMLVGISKEKKA--SVLI 840 +++ K E K +DA+ + K+ S ++M + IS KA L Sbjct: 815 FAQIHKKVLEGQKAAQKLESKKALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLN 874 Query: 841 VVTEDLLDRFNAV----------------------------DLARLSAKVLGGGGGGGRP 872 V + D+ V D A + ++GG GG P Sbjct: 875 FVKTKMQDKSVYVFAADKEAGKVVHGCHVAQSLSEQGATPNDWANAVSSIVGGRAGGKAP 934 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 ++ G K D+AI +L+K Sbjct: 935 -ISIGNGTEAEKLDEAIKAATEYLEK 959 >gi|283782871|ref|YP_003373625.1| alanine--tRNA ligase [Gardnerella vaginalis 409-05] gi|283441998|gb|ADB14464.1| alanine--tRNA ligase [Gardnerella vaginalis 409-05] Length = 894 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 333/941 (35%), Positives = 502/941 (53%), Gaps = 97/941 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I +L++F KNGH ++PS+SLI N PT +FT +GMVPF G++ P + + + Sbjct: 3 TAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+M+GNFSFG YFKE AI AW+LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTTPQDKGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T Y +D+EA +WK G + + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWVTTYTDDDEARAIWKN-EGFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232 +G G G + + R+IEIW+LVF ++ N + + L + +IDTG GLER Sbjct: 177 RGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGLER 235 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290 +A ++Q K N Y+ D +I+A+E+++G+KY NN V RV+ DH+RS+ +++DG+ Sbjct: 236 LAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSDGV 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N GRGYVLRR++RR + R+LG +P++ L P T M +YPEL + E Sbjct: 296 RPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKTAMEPSYPELNDTFHEVSEA 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E++ F +TL++G +LD + K D ++ G AF L+DT+G P+++ ++ Sbjct: 356 AYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPMVGGSDAFTLHDTYGFPIELTLEMAA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D F + + EQ+ RARA +L ++ +K+ F+GY Sbjct: 416 EQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKALEKPIDFLGY----- 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 D ++ S V AIV+ G+ V+ + VE++ D+TPFYAE Sbjct: 470 ----------------TDFSS--RSNVLAIVEAGKGSVKSVTAPANVEIILDRTPFYAER 511 Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+ D G I D G L++ DVQ+ + + VH + G L + ID R L Sbjct: 512 GGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGAPVNTNIDQVRRAAL 571 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH LH AL LG +Q GS + PD LRFD K + L +E VN+ I Sbjct: 572 ARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNERI 631 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +L VV + M +DA GA L G KY D VRVV + G S LCGGTH STG Sbjct: 632 RDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEI----GDGWSRELCGGTHAKSTG 687 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I ++ I+SESSI +G+RRI+A+ G+ A + + + LA + +V R+E + Sbjct: 688 KIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELVERLESL 747 Query: 764 WEEY----RKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV-DSKE-----LKSV- 812 + RKL ++ + QLN + ++ EV +S E LK+V Sbjct: 748 LNKMKDSDRKLASVY---EAQLN------------EAVPTLVDEVKNSNEKVKLALKNVG 792 Query: 813 ----MDALQKKI----------QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLAR 857 DAL+K + ++ L G++++ + + + E A DL R Sbjct: 793 NFGSFDALRKTVLDIRARLGEDAPVVVALAGVNEDDRPMIAVATNEAARGLGAKAGDLVR 852 Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 ++KVL GGGGGG+P AQ GG + +K D+A+ S + K Sbjct: 853 TASKVL-GGGGGGKPDFAQGGGTDASKLDEALEAAKSEVAK 892 >gi|21910594|ref|NP_664862.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS315] gi|21904795|gb|AAM79665.1| alanyl-tRNA synthetase [Streptococcus pyogenes MGAS315] Length = 825 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 313/873 (35%), Positives = 472/873 (54%), Gaps = 72/873 (8%) Query: 47 KNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERA 106 K F G P +T QK +R ND++NVG+T RHHT FEMLGNFS G YF++ A Sbjct: 2 KKYFDGSVIPENPRITNAQKSIRT----NDIENVGKTARHHTMFEMLGNFSIGDYFRDEA 57 Query: 107 IQLAWDLLTKE--FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMA 164 I+ ++LLT FD + +LY+T Y +D++++ W G+ ++ I DNFW + Sbjct: 58 IEWGFELLTSPDWFDFPKDKLYMTYYPDDKDSYNRWIA-CGVEPSHLVPI--EDNFWEIG 114 Query: 165 ETGPCGPCSEIFFDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQFEQQN---KQER 216 GP GP +EIFFD+GE GL +E E +RYIEIWN+V QF + E Sbjct: 115 -AGPSGPDTEIFFDRGEDFDPENIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEY 173 Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRV 274 LP +IDTG GLER+A V+Q N++ DLF +I+ E+++G Y+ G+N+ + +V Sbjct: 174 KELPNKNIDTGAGLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNM-SFKV 232 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334 I DH+R+ SF I DG LP NEGRGYVLRR++RRA+ + R LG E + L+P + M Sbjct: 233 IADHIRALSFAIGDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIME 292 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLY 391 S YPE+++ + IE+ ++ E+E F +T+D G LD +L+ L GKD + D+ FKLY Sbjct: 293 SYYPEVLEKRDFIEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDI-FKLY 351 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 DT+G P+++ +++ G ID F A++EQ+ RARA + GS Sbjct: 352 DTYGFPVELTEELAEDAGYK-IDHEGFKSAMKEQQDRARAAVVKGGS------------- 397 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 G ++ S+F + T + S + I+ E E GQ + Sbjct: 398 MGMQNETLAGIVEESRFEYD-------------TYSLESSLSVIIADNERTEAVSEGQAL 444 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 +VF QTPFYAE GGQ+ DTG D ++ DVQK G +H V L Sbjct: 445 -LVFAQTPFYAEMGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNV-LASLSVGT 502 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + L I+ + R + NH+ATHLLH AL ++G H +Q GS + LRFD TH + +++ Sbjct: 503 NYTLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSN 562 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 EL+ IE VN+ I L + T + E A GA AL G KY VRVV + G + Sbjct: 563 EELRHIEQEVNEQIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQI-----GNY 617 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 S LCGGTH++++ EI L IV E I +G RRI A+TG++A Q++ LK +A+ + Sbjct: 618 SVELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKDIAATV 677 Query: 750 KVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL-----SCHKIADVNFMSHIISE 803 K Q + +V+ + + R LQ +A+ K + + V F++ + Sbjct: 678 KAPQLKDAAAKVQALSDSLRDLQKENAELKEKAAAAAAGDVFKDVQEAKGVRFIASQVDV 737 Query: 804 VDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVL 863 D+ L++ D ++K S +++LV EK ++ T+D+ +A ++ + A ++ Sbjct: 738 ADAGALRTFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKDV----HAGNMIKELAPIV 793 Query: 864 GGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 G GGG+P MA +GG + +K + +A VA + Sbjct: 794 -AGRGGGKPDMAMAGGSDASKIAELLAAVAEIV 825 >gi|219125523|ref|XP_002183027.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405302|gb|EEC45245.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 959 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 308/880 (35%), Positives = 469/880 (53%), Gaps = 70/880 (7%) Query: 7 IRTTFLEFFQKN--GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VY 58 +R+TF++FF++ H SS+ P NDPTL+FTN+GM FK +F GQ P V Sbjct: 13 VRSTFIDFFEQEPRSHTFQRSSACAPLNDPTLLFTNAGMNQFKPVFLGQVDPNSPLANVQ 72 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 +AV + QKC+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AI AW LLT+ + Sbjct: 73 RAVNS-QKCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIDYAWQLLTEVY 131 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD RLY T + D+ EA LW + L A ++I DNFW M E GPCG Sbjct: 132 RLDPDRLYATYFQGDDALGLAPDFEARDLWLRY--LPAARVIGCDVRDNFWEMGEVGPCG 189 Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 PCSEI +D+ G + + + IEIWN+VF+Q+ ++ + + LP IDTGMG Sbjct: 190 PCSEIHYDRIGNRDAAAFVNADD--PQVIEIWNIVFIQYNREPDKLQ-TLPAKHIDTGMG 246 Query: 230 LERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGN--------NIVNHRVIVDHLR 280 LER+ ++LQ K +NYDID+F+ L + + Y G +R I DH R Sbjct: 247 LERLVSILQNKDSNYDIDVFQPLFAKLATHTDRGPYTGRVGTDDVDLKDTAYRAIADHAR 306 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339 + +F IADG +P NEGRGYVLRRI+RRA Y + + + P L+P + G YPE Sbjct: 307 TLAFAIADGAVPNNEGRGYVLRRILRRATRYGQQILHCAPGFFATLIPVVVETFGETYPE 366 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEIL--NGDVAFKLYDTHGLP 397 L A+ I E ++ E++ FG LDRG+ + L ++++L +G+ AF +YDT G P Sbjct: 367 LRAAESTILEIVQEEEQAFGDMLDRGIKFFTELEGELKENKVLEISGEKAFFMYDTLGFP 426 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + + GL+ +D+ F A+E Q++R+R +G + ++ Sbjct: 427 VDLTELMAQEAGLS-VDMAGFANAMETQKTRSRQAQKTARAGNAPVLELVAEQ---TAWL 482 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS--GQKVEVVF 515 + ++L K V Q P ++++ + G + ++ + G V +V Sbjct: 483 VDQNVLPTDDGFKYKWDV--QLP--------ATVMALYGKDGFLTGDSTADQGDFVGIVL 532 Query: 516 DQTPFYAEAGGQLGDTGC------AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 D++ FYAEAGGQ D G A R +TDVQ A G +H VE G + + Sbjct: 533 DKSSFYAEAGGQEADVGTLEFLDEAGTITGRFTVTDVQVYA-GFLLHKGAVEEGSIAVDQ 591 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ +DY+ RR ++ NHS TH+L+ AL +LG Q GS + LRFD H + +T Sbjct: 592 AVNCKVDYERRRMIAPNHSMTHVLNAALRNVLGEKCDQRGSLCNNEKLRFDFAHKRAMTM 651 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV 688 E+K++E+ +A PV +++M+ DA A G A+ G Y D VRV+++ G Sbjct: 652 LEIKAVEEFCQKSVADAQPVKSKVMSLADAQAIDGVRAVFGEVYPDPVRVIAI----GDS 707 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S CGGTH+ +T E +V E+++ GIRR+ A+T A+ L G K ++L Sbjct: 708 SSVEFCGGTHLENTAEAEAFVLVEETAVAKGIRRVTAVTKDAAKRALAG-GVKFQALVDK 766 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQ--LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVD- 805 ++ G ++ + L + A K +L + K A+ + VD Sbjct: 767 IEQLPATTSGLYKQAGSARKDLDAAFVSAVLKAELRTRLEAIQKKANDAAKKALQQRVDL 826 Query: 806 --SKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 + K V AL++K+Q+ +++ V I+ + KAS ++ T Sbjct: 827 VLNDVKKDVAVALEEKMQT-LVLNVDIAADSKASQRVMNT 865 >gi|239608271|gb|EEQ85258.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis ER-3] Length = 962 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 294/771 (38%), Positives = 423/771 (54%), Gaps = 72/771 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P T Sbjct: 17 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 76 Query: 63 -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +WDLLTK + L+ Sbjct: 77 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 136 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW + G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ ++ + LP IDTGMG Sbjct: 196 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGY 251 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ ++LQ K++NYD D+F L ++TG + Y G + I +RV+ DH+R+ Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRT 311 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 312 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPE 371 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLP 397 + + + + E L E+ F KTLDRG L + + + L+G ++LYDT G P Sbjct: 372 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFP 431 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ Q + RGL ID N EE R +A+ S G G T + + ++ + Sbjct: 432 VDLTQLMAEERGLT-ID----NAEFEEARLKAKEASKGQGKQTADVVKLTVHD------- 479 Query: 458 IG-YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513 +G + + +D K ++S +KAI + V+ + G++ + Sbjct: 480 LGLLETMNNVPKTNDDAKF--------GRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGI 531 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG I DG L + DVQ G +H ++ G S++ Sbjct: 532 ILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSFNVNDSVI 590 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H ++ ++L Sbjct: 591 AEYDELRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 650 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED--GG 687 + IE D I QN V + + A SG A+ G Y D VRVVS VE E+ Sbjct: 651 EKIERISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQN 710 Query: 688 VH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 VH S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A Sbjct: 711 VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEA 761 >gi|261203393|ref|XP_002628910.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081] gi|239586695|gb|EEQ69338.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis SLH14081] Length = 962 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/778 (38%), Positives = 420/778 (53%), Gaps = 86/778 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P T Sbjct: 17 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 76 Query: 63 -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +WDLLTK + L+ Sbjct: 77 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 136 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW + G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ ++ + LP IDTGMG Sbjct: 196 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGY 251 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ ++LQ K++NYD D+F L ++TG + Y G + I +RV+ DH+R+ Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRT 311 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 312 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPE 371 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLP 397 + + + + E L E+ F KTLDRG L + + + L+G ++LYDT G P Sbjct: 372 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFP 431 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ Q + RGL ID N EE R +A+ S G G T + + Sbjct: 432 VDLTQLMAEERGLT-ID----NAEFEEARLKAKEASKGQGKQTADVV------------- 473 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTN--------GVSSIVKAIVQQGEIVE---EAV 506 K D +L + TN ++S +KAI + V+ + Sbjct: 474 ---------KLTVHDLGLLETMDNVPKTNDDAKFGRGNITSQIKAIYHNKKFVDSTKDIP 524 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565 G++ ++ D+T FYAE GGQ DTG I DG L + DVQ G +H ++ G Sbjct: 525 EGEQFGIILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSF 583 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 S++ D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H Sbjct: 584 NVNDSVIAEYDELRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKS 643 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VE 682 ++ ++L+ IE D I QN V + + A SG A+ G Y D VRVVS VE Sbjct: 644 AVSDSDLEKIERISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVE 703 Query: 683 YED--GGVH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ VH S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A Sbjct: 704 LEEILQNVHDPRWKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEA 761 >gi|171915187|ref|ZP_02930657.1| alanyl-tRNA synthetase [Verrucomicrobium spinosum DSM 4136] Length = 917 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 324/955 (33%), Positives = 484/955 (50%), Gaps = 120/955 (12%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSL-IPCNDPTLMFTNSGMVPFKNIFTGQEKP------- 56 + IR +FL+FF++ H ++PS ++ D +FTN+GM F IF G E+P Sbjct: 4 AQIRQSFLDFFKEKQHTIVPSDNVGYTSRDGARIFTNAGMNQFVPIFLG-ERPADVDTWP 62 Query: 57 --VYQAVTT----VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLA 110 +++ + T QKC+RAGGKHNDL++VG HHTFFEMLGN+SFG YFK+ AI A Sbjct: 63 GVLHKGLPTRAADTQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGNWSFGDYFKKDAISWA 122 Query: 111 WDLLTKEFDLDQRRLYITVY--------DEDEEAFKLW-KKISGLSADKIIRITT---ND 158 W+L+ + + R++ T+Y + DEE++ W +K + D I I D Sbjct: 123 WELVIERWKFPPTRVFATIYQPGEGDPAERDEESWGYWAEKFRSVGLDPEIHIVNGNKKD 182 Query: 159 NFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERY-------------IEIWNLVF 205 NFW MAETGPCGPC+EI D PG P +EG + IEIWN VF Sbjct: 183 NFWMMAETGPCGPCTEIHID---LTPG--PRDLDEGRQREGAKLVNGSSADCIEIWNNVF 237 Query: 206 MQFEQQNKQERFILPKMSIDTGMGLERMATVLQ----------EKTNNYDIDLFKHLIQA 255 +Q+ + LP +DTGMG ER+ +++Q K +NYD D+FK + Sbjct: 238 IQYNANADKTFSKLPAQHVDTGMGFERVTSIIQGTRNFTDFENAKISNYDTDVFKPIFDE 297 Query: 256 SEQVTGMKY-------------EGNNI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 +++G Y E I V RV+ DH+R+ SF IADGI P N R Y L Sbjct: 298 ISKMSGKTYASTLPASGSTGDTEQEKIDVAFRVLADHIRTLSFSIADGISPGNNDRNYTL 357 Query: 302 RRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKT 361 RRI+RRA+ Y R LG+ EP L+ L MG +PEL K ++ L+ E+E F +T Sbjct: 358 RRILRRAVKYGRTLGFKEPFFYKLVDVLAQHMGEVFPELRARKEHVKSVLKMEEESFNRT 417 Query: 362 LDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 LDRG+ L + L GK + G+VAF+L DT G P+D+ Q + RGL +D+ + + Sbjct: 418 LDRGISLFESEADKLAGKGTEITGEVAFRLSDTFGFPIDLTQLLARERGLT-VDVPEYER 476 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 L EQ+ R+ S G + + S E T+FIGYD L Sbjct: 477 LLAEQKKRSTEDS----KGRKQVVSLSEIETKEPTKFIGYDNLEAP-------------- 518 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 +++E K VV D +PFYAE GGQ+GD+G I Sbjct: 519 ------------------AKVLEVVSMKDKTAVVLDSSPFYAEMGGQVGDSGALIIGADS 560 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 I++ QK H + + L ++ RR + +H+ TH++H AL + Sbjct: 561 FPISNTQKVGNTWL--HFLDGEDTPSVGVEAQLAVEPSRRRAIERHHTVTHIMHWALHEV 618 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND-IIAQNLPVVTRIMNREDA 659 + +Q GS + PD L FD +S +T+A+L IE VN+ I+A ++ + E Sbjct: 619 VSKEATQKGSFVGPDKLTFDF-NSAALTAAQLADIERLVNERIVANDVVSWDELPYAEVK 677 Query: 660 IASGAAALLGTKYNDRVRVVSVEYEDGGV--HSSALCGGTHVSSTGEIMLLYIVSESSIR 717 G L G KY D+VRVV V + + +S LCGGTH STGEI L +VSES++ Sbjct: 678 SNPGIMQLFGEKYGDKVRVVQVGGQAHALNGYSMELCGGTHTRSTGEIGLFRLVSESAVS 737 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQ-LIH 774 AG+RR+EAI G A + LK LA + ++QG ++ ++E + ++ + L+ + Sbjct: 738 AGVRRLEAIAGLEAYRAARSDADLLKLLAGKV-LAQGTLDLEKKIETLLDQQKALEKALK 796 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEK 834 + ++ + + +A + + + EVD +V DAL K + SGI+++ G + Sbjct: 797 SAQQREAAARAKALLGLASNDAIIANLGEVDGDYAMAVSDAL-KSLFSGIVVVAGTAG-G 854 Query: 835 KASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 S++ V++D + A + + A ++ GG GGG+P A+ GG K D A+ Sbjct: 855 NVSLIATVSKDHQAKLQAGKIIQAIAPIV-GGKGGGKPDFARGGGKEVAKVDAAL 908 >gi|328858383|gb|EGG07496.1| hypothetical protein MELLADRAFT_48072 [Melampsora larici-populina 98AG31] Length = 966 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 293/780 (37%), Positives = 439/780 (56%), Gaps = 83/780 (10%) Query: 7 IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQ 59 +R TF+ +FQ K H+ +PSSS+ P +DPTL+FTN+GM +K+IF G P + + Sbjct: 21 VRKTFINYFQEKYQHQFVPSSSVCPLDDPTLLFTNAGMNQYKSIFLGTIDPSNPLSKIKR 80 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 AV + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE +++AW+LLT+ + Sbjct: 81 AVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEDGLKMAWELLTELYG 139 Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L + RLY+T ++ DE E+ ++W ++ G+ D I+ DNFW M TGPCGP Sbjct: 140 LPKDRLYVTYFEGDEKQGLEPDLESKRIWLEL-GVQEDHILPGNAKDNFWEMGATGPCGP 198 Query: 172 CSEIFFDQGECIPGGLPGS--SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 CSEI +D+ + G GS +++ IEIWN VF+++ +++ LP +DTGMG Sbjct: 199 CSEIHYDR---VGGRNAGSLVNQDDPLVIEIWNNVFIEYNRESDGSLKELPSKHVDTGMG 255 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLR 280 ER+ ++LQ+K +NYD D+F+ + + +Q+TG + YEG + +RV+ DH+R Sbjct: 256 FERLVSILQDKKSNYDTDIFRPIFEKIQQLTGARPYEGKLGIEDQDGIDTAYRVVADHIR 315 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMGSAY 337 + +F I+DG +P N GRGYVLRRI+RR Y R + P+ L+P L +MG + Sbjct: 316 TLTFAISDGGVPNNVGRGYVLRRILRRGARYIR-KKFNVPIGTFFSKLMPTLIEQMGDEF 374 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395 PE+ + +L + E L E++ F TLDRG + + + + K+ ++L+G +KLYDT G Sbjct: 375 PEIEKRRLEVIEILNEEEDSFSLTLDRGEKIFEKYCNRVKKNNGKVLDGKEVWKLYDTFG 434 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ ++ GID F A E + L G +KI GA Sbjct: 435 FPIDLTL-LMAEEAGIGIDQDGFEIAQSESKE--------LSKGGKKKI-------VGA- 477 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG-----VSSIVKAIVQQGEIV---EEAVS 507 G +L S + E + P D ++ +++ VKAI Q GE +E S Sbjct: 478 ---GVELDVHSIAVLESNSSV---PKTDDSSKFSLTTINATVKAIFQAGEFYSSSKELKS 531 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILR 566 G+ V+ D+T FYAE GGQ DTG I +G + + DVQ G +H + G ++ Sbjct: 532 GEPFGVILDKTNFYAEQGGQENDTGTLIIEGEMIFDVEDVQ-VFNGYVLHIGNLSEGEIK 590 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 E + + D R+ + NH+ TH+L++AL LG H+ Q GS ++ + RFD +H + Sbjct: 591 KEDLVQSSFDELRRKPIKNNHTGTHILNYALRETLGDHIDQKGSLVSSNKFRFDFSHKQQ 650 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYED 685 + ++EL+ IE ND I +N V ++ M +A G A+ G +Y D VRVV + E Sbjct: 651 VKASELEQIEKICNDWILKNHSVYSKEMKLSEAEKIPGLRAVFGERYPDPVRVVVIGPEP 710 Query: 686 GGV------------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 + +S CGGTHV T EI L +V ES I GIRRI A+TG+ A++ Sbjct: 711 IELDADQLNESKWLNYSVEFCGGTHVKKTNEIKELILVEESGIAKGIRRIVAVTGEEAKT 770 >gi|297737260|emb|CBI26461.3| unnamed protein product [Vitis vinifera] Length = 960 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 299/783 (38%), Positives = 415/783 (53%), Gaps = 93/783 (11%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VY 58 + +R TF+ FF+ H SS ++P NDPTL+F N+GM FK IF G P + Sbjct: 14 AKVRDTFISFFEAKEHVNWVSSPVVPLNDPTLLFANAGMNQFKPIFLGTADPNTPLSKLT 73 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--- 115 +A T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AI+ AW+LLT Sbjct: 74 RACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAIEWAWELLTEAI 132 Query: 116 --KEFDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 K + L R Y T + DE D+EA +W K L ++ DNFW M + Sbjct: 133 CNKVYKLPTDRFYATYFGGDEQLGLAPDDEARDIWLKF--LPPGHVLPFGCKDNFWEMGD 190 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKM 222 TGPCGPC+EI FD+ G +S + IEIWNLVF+QF +++ LP Sbjct: 191 TGPCGPCTEIHFDR----IGNRDATSLVNNDDPTCIEIWNLVFIQFNRESDGSLKPLPAK 246 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHR 273 +DTGMG ER+ ++LQ K +NYD D+F + A TG + + +R Sbjct: 247 HVDTGMGFERLTSILQNKMSNYDTDVFLPIFDAIHLATGAPLYSGKVGTEDVDKVDMAYR 306 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTE 332 V+ DH+R+ SF IADG P NEGR YVLRRI+RRA+ Y + +L E L+ + Sbjct: 307 VVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVGVVVKV 366 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 MG +PEL Q ++ I + +E+ FGKTL +G+ + + +IL+G AF L+D Sbjct: 367 MGDVFPELKQHEMHIRGIIAAEEASFGKTLIKGIEKFKKAAQEV-QGKILSGQEAFVLWD 425 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G PLD+ Q + RGL +D++ FN A++E R R+R + +K Sbjct: 426 TYGFPLDLTQLMAEERGLT-VDVMGFNIAMDEARERSRN---------------AQNKKA 469 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVE 503 G G+ M D K + T+ +S S++KAI E +E Sbjct: 470 G-----------GAIVMDADATAALHKMGVAATDDISKFTWFEDHESVIKAIYTGIEFLE 518 Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH---AIV 560 A +G +V ++ + T FYAE GGQ+ DTG G Q+ +VQ G FV H Sbjct: 519 SAAAGDEVGIILETTSFYAEQGGQIFDTGSLEGSCGSFQVCNVQ--IYGGFVLHIGSVTG 576 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 E G ++ +DY R+ ++ NH+ TH+L+ AL +LG+HV Q GS + P+ LRFD Sbjct: 577 EIGRFSVGDKVICKVDYDRRKLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFD 636 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVV 679 +H KPI L+ IE VND I L V + DA +G A+ G Y D VRVV Sbjct: 637 FSHGKPIHPDHLRRIESIVNDQIKDELDVYGKEATLADAKRINGLRAVFGEVYPDPVRVV 696 Query: 680 SV--EYEDGGVH---------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 ++ + ED S+ LCGGTH+S+T E ++SE I GIRRI A+T Sbjct: 697 TIGRKVEDLLADPDNAEWLSVSAELCGGTHISNTREAKAFALLSEEGIAKGIRRITAVTT 756 Query: 729 QRA 731 A Sbjct: 757 DSA 759 >gi|327349463|gb|EGE78320.1| alanyl-tRNA synthetase [Ajellomyces dermatitidis ATCC 18188] Length = 1088 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 294/771 (38%), Positives = 423/771 (54%), Gaps = 72/771 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P T Sbjct: 126 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLKRA 185 Query: 63 -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +WDLLTK + L+ Sbjct: 186 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISYSWDLLTKVYGLE 245 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW + G++ D ++ DNFW M E GPCGPCS Sbjct: 246 PDRLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 304 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ ++ + LP IDTGMG Sbjct: 305 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNREPDRSLRPLPNRHIDTGMGY 360 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ ++LQ K++NYD D+F L ++TG + Y G + I +RV+ DH+R+ Sbjct: 361 ERLVSILQNKSSNYDTDVFTPLFDKIREITGCRPYTGKFGEEDTDGIDTAYRVVADHIRT 420 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 421 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGSFFSKIVPTLVEQMGDMFPE 480 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLP 397 + + + + E L E+ F KTLDRG L + + + L+G ++LYDT G P Sbjct: 481 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGLGNLHGADVWRLYDTFGFP 540 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ Q + RGL ID N EE R +A+ S G G T + + ++ + Sbjct: 541 VDLTQLMAEERGLT-ID----NAEFEEARLKAKEASKGQGKQTADVVKLTVHD------- 588 Query: 458 IG-YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513 +G + + +D K ++S +KAI + V+ + G++ + Sbjct: 589 LGLLETMNNVPKTNDDAKF--------GRGNITSQIKAIYHNKKFVDSTKDIPEGEQFGI 640 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG I DG L + DVQ G +H ++ G S++ Sbjct: 641 ILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSFNVNDSVI 699 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H ++ ++L Sbjct: 700 AEYDELRRWPIRNNHTGTHILNFALRQVLGEGVEQKGSLVAAEKLRFDFSHKSAVSDSDL 759 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED--GG 687 + IE D I QN V + + A SG A+ G Y D VRVVS VE E+ Sbjct: 760 EKIERISTDYIRQNCAVYAKDVPLSTAREISGVRAVFGETYPDPVRVVSVGVELEEILQN 819 Query: 688 VH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 VH S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A Sbjct: 820 VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEENGIAKGIRRIIAVTGEEA 870 >gi|242798694|ref|XP_002483222.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC 10500] gi|218716567|gb|EED15988.1| alanyl-tRNA synthetase, putative [Talaromyces stipitatus ATCC 10500] Length = 1002 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 322/980 (32%), Positives = 497/980 (50%), Gaps = 125/980 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R+ F+++F++ GH +PSSS++P DPTL+F N+GM +K+IF G P + +A Sbjct: 57 VRSEFIDYFKERGHTFVPSSSVVPHADPTLLFANAGMNQYKSIFLGTVDPQSDFAHLKRA 116 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V + QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK+ AI +W+LLTK F L Sbjct: 117 VNS-QKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKKEAITYSWELLTKVFGL 175 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D RLY+T ++ +E EA ++W+ + G+ D I+ DNFW M + GPCGPC Sbjct: 176 DPSRLYVTYFEGNESGGLEPDLEAKEIWRNV-GVPEDHILPGNMKDNFWEMGDQGPCGPC 234 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI +D+ GG +S ++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 235 SEIHYDR----IGGRNAASLVNQDDPNVLEIWNNVFIQYNREADRSLRPLPNKHVDTGMG 290 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGNNIVN--------HRVIVDHLR 280 ER+ +VLQ+K++NYD D+F L + +++TG +Y+G +RV+ DH+R Sbjct: 291 FERLVSVLQDKSSNYDTDVFMPLFRTIQEITGAPEYQGRFGAEDADGVDTAYRVVADHVR 350 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +P Sbjct: 351 TLTFAISDGAYPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTLVEQMGVMFP 410 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396 E+ + + + E L E+ F KTLDRG + + L+G ++LYDT G Sbjct: 411 EIKEKQAEVMEVLNEEEVSFSKTLDRGEKQFENYAQQAKSKGLNKLHGADVWRLYDTFGF 470 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + RGL+ ID F EE R +A+ S G E + + + Sbjct: 471 PVDLTQIMAEERGLS-IDEAEF----EEARLKAKEASKGQKKAAAETVKLDVHD------ 519 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS---GQKVEV 513 +G L S K D P I+ SIVKAI ++ G+++ V Sbjct: 520 -LG-KLDNMSDVPKTDDSSKFDSPRIE------SIVKAIYYSKNFIQSTADVPEGEQIGV 571 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG DG L++ DVQ G +H ++ G L S++ Sbjct: 572 ILDRTNFYAEQGGQENDTGIISIDGKAELEVGDVQSYG-GYVLHTGFIKYGSLAVGDSVM 630 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D + R+ + NH+ TH+L+ AL ILG ++Q GS + + LRFD +H ++ EL Sbjct: 631 CEFDDRRRQPIRNNHTGTHILNFALREILGDGINQKGSLVAAEKLRFDFSHKAAVSDKEL 690 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND----------------- 674 IE + I QN V ++ + A +G A+ G Y D Sbjct: 691 DQIERKSTEYIRQNCGVYSKEVPLATAREITGVRAVFGETYPDPVRVVSVGVEVEEILKD 750 Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 R +S+E+ CGGTHVS +GEI L I+ ES I GIRRI A+TG Sbjct: 751 VKDPRWNDISIEF----------CGGTHVSRSGEIRELVILEESGIAKGIRRIIAVTGDE 800 Query: 731 A-RSHLMGQD-----EKLKSL----------------------ASFLKVSQGNVVGRV-E 761 A ++ L + EKL++L ++ K ++ R+ + Sbjct: 801 ALQAQLTAVEFEKRLEKLRTLEHGPAKEMEMKQVQLELNQLAISAVQKAKFRDLFARINK 860 Query: 762 EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKI 820 ++ ++ + LQ + K+ L + D F++ + + ++K + ++ ++ K+ Sbjct: 861 QVLDDQKALQKVELKKAQDLIKAYFGAEENKDRTTFVTKLPATSNAKVVSESINFIKSKM 920 Query: 821 QSGIIMLVG--ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + S K A V + + A + + +GG GG P A Sbjct: 921 ADKTVYFIAPDPSGNKVAHGCHVAKAASELGLSPSEWANVVSGAVGGKAGGRAP-TAIGN 979 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N +K D+ +A +L+K Sbjct: 980 GTNVDKVDEGVALATEYLQK 999 >gi|189218662|ref|YP_001939303.1| Alanyl-tRNA synthetase [Methylacidiphilum infernorum V4] gi|205830140|sp|B3E044|SYA_METI4 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|189185520|gb|ACD82705.1| Alanyl-tRNA synthetase [Methylacidiphilum infernorum V4] Length = 926 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 313/804 (38%), Positives = 431/804 (53%), Gaps = 124/804 (15%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58 M N + IR +FL+FF++ GH +LPS+SL+P P L+FTN+GM PF F G++K Y Sbjct: 1 MMNSNEIRQSFLDFFKERGHTILPSASLVP-ESPNLLFTNAGMNPFVPFFLGKQKCPYVP 59 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDL+ VG HHTFFEMLGN+SF YFKE AI AW+LLT+++ Sbjct: 60 PRIADSQKCLRAGGKHNDLEEVGYDTYHHTFFEMLGNWSFNDYFKEEAIHWAWELLTQKW 119 Query: 119 DLDQRRLYITVY----DE----DEEAFKLWKKI-SGLSADKIIRI---TTNDNFWSMAET 166 + R+Y TVY DE DEEAF++W K+ + ++ I T DNFW M ET Sbjct: 120 GFPKERIYATVYKPAPDEPGEFDEEAFRIWFKLFQKAKLNPLLHIHFGTKKDNFWMMGET 179 Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERY-------IEIWNLVFMQFEQQNKQERFIL 219 GPCGPCSEI D P EG+ IEIWNLVF+Q +L Sbjct: 180 GPCGPCSEIHIDL-------TPDGQSEGKLINKNSPLCIEIWNLVFIQLNANEDGSFSLL 232 Query: 220 PKMSIDTGMGLERMATVLQ---------EKTNNYDIDLFKHLIQASEQVTGMKYEGN--- 267 P +DTGMGLER+ ++Q ++YD DLF LI+ + ++ + Y G+ Sbjct: 233 PSRHVDTGMGLERVCAIIQGTSSFRQFNRTISDYDTDLFIPLIEKLQDISKVSYTGSIPP 292 Query: 268 -----------NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316 + RVIVDH+R+ +F IADGILP+N GRG+VLRR++RRA+ + ++LG Sbjct: 293 TPDFALDPQLKKDIAFRVIVDHVRALAFAIADGILPSNLGRGHVLRRLLRRAIRFGQILG 352 Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376 P + ++ L MGS YPELI + IEE + SE+E F +TL GL L + + + Sbjct: 353 VNPPFLFEMVDPLVKIMGSHYPELIDKQGHIEEVISSEEELFARTLSHGLALFEEIKQKM 412 Query: 377 --GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRA-RAHS 433 K + ++G AF LYDT+G PLD+ Q + +G + +D F + + EQR R+ +H Sbjct: 413 IAEKRKEISGKEAFVLYDTYGFPLDLTQLLAKEQGFS-VDTQGFERLMAEQRRRSLLSHE 471 Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493 + S T +QF+GY+ L + S + Sbjct: 472 EDIVSLTK------------TSQFVGYEELEAEA----------------EVVVLLSANR 503 Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553 AI FD+TPFYAE GGQ+GD G + D ++++ D K A G Sbjct: 504 AI-------------------FDRTPFYAEMGGQVGDKGYVVFDQKKIEVLDTMKSASGA 544 Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613 VH + L+ + L +D + RR ++ +H+ATHLLH AL +LG Q GS + Sbjct: 545 HVHR-LAFTDDLKPGSRVYLQVDEKRRRCIAAHHTATHLLHWALRKVLGPETLQRGSYVG 603 Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVT------RIMNREDAIASGAAAL 667 PD LRFD +H+ P+++ EL IE VN+ I N PV ++ N D + L Sbjct: 604 PDRLRFDFSHTGPLSAEELAEIERLVNEKIELNDPVTAEEESYEKVKNNPDIL-----QL 658 Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 G KY RVR+VSV G +S LCGGTHV STGEI I+ E + AGIRRIEA Sbjct: 659 FGEKYGQRVRIVSV-----GRYSKELCGGTHVRSTGEIGYFKILGEYGVSAGIRRIEAAC 713 Query: 728 GQRARSHLMG----QDEKLKSLAS 747 G+ L QD+K + L S Sbjct: 714 GKALEQFLHAQAAEQDKKWQILHS 737 >gi|326927213|ref|XP_003209787.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Meleagris gallopavo] Length = 968 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 302/792 (38%), Positives = 432/792 (54%), Gaps = 65/792 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SSS IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASQIRQRFIDFFKENRHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A +LA DLLTKE Sbjct: 66 LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALDLLTKE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + +E E ++W + GL +I+ DNFW M +TGPC Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLDEGRILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPCSEI +D+ G+ L +++ +EIWNLVF+QF ++ LPK SIDTGM Sbjct: 185 GPCSEIHYDRIGDRDASHL--VNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGM 242 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHL 279 GLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH Sbjct: 243 GLERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYMGQVGAEDADGIDMAYRVLADHA 302 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + ++DG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+P Sbjct: 303 RTITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFP 362 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL + ++++ + E+++F KTL RG +LD + +G + + GD A+ LYDT+G P+ Sbjct: 363 ELKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSMGDSKTIPGDTAWLLYDTYGFPV 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ I +GL +D+ F EE+R A+ S G G+G + + + Y + Sbjct: 423 DLTGLIAEEKGLV-VDMEGF----EEERKNAQLKSQGKGAGGEDLLMLDI---YAIEELR 474 Query: 459 GYDLLRGSKFMKEDRKVLCQKPP---IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 RG + + K P D + V++ VKAI ++ + VEE +GQ+ +V Sbjct: 475 A----RGLEVTDDSPKYGYTSDPSGTYDFGSLVAT-VKAIRREKKFVEEVSTGQECGIVL 529 Query: 516 DQTPFYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 D+T FYAE GGQ+ D G + D + +VQ + G +V H G L+ Sbjct: 530 DRTCFYAEQGGQIYDQGYMVKDDDSREDKTEFTVKNVQVR--GGYVLHIGTLYGSLKVGD 587 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + L+ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ Sbjct: 588 QVHLSIDETRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGALST 646 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 E+K +E N +I + V R A A G A+ Y D VRVVS+ Sbjct: 647 QEIKKVEGIANQMIEEAKTVYARDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVDEL 706 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 G + S CGGTH+ ++G IVSE +I GIRRI A+TG AR L Sbjct: 707 LADPSGPAGSITSIEFCGGTHLQNSGHAGPFVIVSEEAIAKGIRRIVAVTGAEARKALR- 765 Query: 738 QDEKLKSLASFL 749 + E LK L S L Sbjct: 766 KVESLKKLLSAL 777 >gi|134083795|emb|CAK47129.1| unnamed protein product [Aspergillus niger] Length = 961 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 293/776 (37%), Positives = 424/776 (54%), Gaps = 82/776 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL++F++NGH + SS ++P +DPTL+FTN+GM FK+IF G P ++ Sbjct: 16 VRDTFLQYFKENGHTFVASSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFANLKSA 75 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + LD Sbjct: 76 VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKDAIRYSWELLTKIYGLD 135 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RRLY+T + + D EA LWK + G+ D I+ DNFW M + GPCGPCS Sbjct: 136 PRRLYVTYFEGNKEGGLEPDLEAKDLWKAV-GVPEDHILPGNMKDNFWEMGDQGPCGPCS 194 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 195 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNRETDRSLRPLPNKHVDTGMGF 250 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ +VLQ K++NYD D+F + Q VTG + Y G + I +RVI DH+R+ Sbjct: 251 ERLVSVLQNKSSNYDTDVFTPIFQTIRDVTGAREYRGCFGSDDADGIDTAYRVIADHVRT 310 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 F I+DG +P N+GRGYV+RR++RR YAR E ++P + ++G +PE Sbjct: 311 LMFAISDGAVPNNDGRGYVIRRVLRRGARYARKYFGVEIGNFFSKIVPTVVDQLGDMFPE 370 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGL 396 L + + + E L E+ F KTLDRG + G D++ DV ++LYDT G Sbjct: 371 LRRKQPDVMEILDEEEMSFAKTLDRGERQFEHYAQQAKAKGADKLHGADV-WRLYDTFGF 429 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL ID ++ EE RSRA+ S G + E + + Sbjct: 430 PVDLTRIMAEERGLQ-ID----DREFEEARSRAKEASRGQKKTSAETVKLDV-------- 476 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEI---VEEAVSG 508 +DL + + + P D T +++ VKAI +E G Sbjct: 477 ---HDLGK--------LEAMNDVPKTDDTAKFGKGNITAQVKAIYHGKTFHSSTDEVPDG 525 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRT 567 +++ ++ D+T FYAE GGQ DTG + DG L++ DVQ A G +H ++ G Sbjct: 526 EQLGIILDRTNFYAEQGGQENDTGKIVIDGQSELEVGDVQLYA-GYVLHTGFMKYGSFSV 584 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 +++ D R + NH+ TH+L+ AL T+LG V Q GS + + LRFD +H I Sbjct: 585 GDTVICEYDELRRWPIRNNHTGTHILNFALRTVLGDGVEQKGSLVAAEKLRFDFSHKSAI 644 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDG 686 + +L IE+ + I QN V ++ + A SG A+ G Y D VRVVSV E G Sbjct: 645 SDKDLARIEEISTEYIRQNCTVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVELG 704 Query: 687 GVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + S CGGTHV TG+I L ++ E I GIRRI A+TG+ A Sbjct: 705 EILQNVKDPRWKEVSIEFCGGTHVQKTGDIKDLIVLEEGGIAKGIRRIIAVTGEDA 760 >gi|145640917|ref|ZP_01796499.1| alanyl-tRNA synthetase [Haemophilus influenzae R3021] gi|145274431|gb|EDK14295.1| alanyl-tRNA synthetase [Haemophilus influenzae 22.4-21] Length = 616 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 269/636 (42%), Positives = 374/636 (58%), Gaps = 49/636 (7%) Query: 145 GLSADKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GER 196 G+ A++IIRI N DNFW+M +TGPCGPC+EIF+D G+ I GG PGS EE G+R Sbjct: 16 GVPAERIIRIGDNKGAPYASDNFWAMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDR 75 Query: 197 YIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256 YIEIWN+VFMQF + LP+ S+DTGMGLER++ VLQ +NY+ID+FK LI + Sbjct: 76 YIEIWNVVFMQFNRLADGTMEKLPRPSVDTGMGLERISAVLQHVNSNYEIDIFKTLIAKT 135 Query: 257 EQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316 ++ G N + RVI DH+RS ++LIADG++P+NEGRGYVLRRI+RRA+ + LLG Sbjct: 136 AEIVGATDLSNKSL--RVIADHIRSCAYLIADGVIPSNEGRGYVLRRIIRRAVRHGHLLG 193 Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376 E L+P L M A ++ + +E+ LR E+E+F +TL+RGL LLD L+ + Sbjct: 194 AKESFFYKLVPTLIEVMAEAGKDVKAKQTNVEKLLRLEEEQFARTLERGLSLLDEALAQV 253 Query: 377 GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS-LG 435 KD++L+G+VAFKLYDT+G PLD+ D+ R + ID +F++ +E QR+RA+A S G Sbjct: 254 -KDDVLSGEVAFKLYDTYGFPLDLTADVCRERNIT-IDEQAFDREMEAQRTRAQAASQFG 311 Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495 + + ++ G T+F GY + + + A+ Sbjct: 312 VDYNSVIRV-------DGETKFEGYTEVES-----------------------QAKITAL 341 Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555 G+ VE +GQ V+ + TPFYAE+GGQ+GD+G G+ + D QK + +F Sbjct: 342 FYDGKSVESIEAGQSAVVILENTPFYAESGGQIGDSGYLSAQGVTFNVKDTQKYGQ-VFG 400 Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615 H + +G L+ S+ +D + R S+NHSATHLLH AL ILG HV Q GS ++ Sbjct: 401 HIGELTQGSLKVGQSVNAIVDAKRRHNTSLNHSATHLLHAALRQILGLHVVQKGSLVSDK 460 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675 LRFD + IT +L IE VN I N PV T IM+ + A A GA AL G KY D+ Sbjct: 461 ALRFDFAQPEAITKEQLSEIETLVNQKIRANFPVQTDIMDIDSAKAKGAMALFGEKYGDK 520 Query: 676 VRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 VRV+++ G S LCGG H TG+I L I++E+++ AGIRRIEA+TGQ A L Sbjct: 521 VRVLTM-----GDFSIELCGGIHAKRTGDIGLFKIITENAVAAGIRRIEAVTGQNAIDWL 575 Query: 736 MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 Q L A LK +V + + RK + Sbjct: 576 HNQQRILTQSADLLKSDVNTLVEKSNNFKTKRRKWK 611 >gi|297242856|ref|ZP_06926794.1| alanyl-tRNA synthetase [Gardnerella vaginalis AMD] gi|296889067|gb|EFH27801.1| alanyl-tRNA synthetase [Gardnerella vaginalis AMD] Length = 894 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 329/932 (35%), Positives = 497/932 (53%), Gaps = 79/932 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I +L++F KNGH ++PS+SLI N PT +FT +GMVPF G++ P + + + Sbjct: 3 TAEIAKRYLDYFAKNGHMVVPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+M+GNFSFG YFKE AI AW+LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMVGNFSFGDYFKEEAIHYAWELLTSPQDKGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T Y +D+EA +WK G + + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWVTTYTDDDEARAIWKN-EGFDPEHMQVFGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLER 232 +G G G + + R+IEIW+LVF ++ N + + L + +IDTG GLER Sbjct: 177 RGPKY-GRDGGPAADESRFIEIWDLVFENYQVDNVKSKTDLHIAGELDQKNIDTGAGLER 235 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIADGI 290 +A ++Q K N Y+ D +I+A+E+++G+KY NN V RV+ DH+RS+ +++DG+ Sbjct: 236 LAYLMQGKENIYETDEVYPVIEAAEKLSGVKYGDNNDADVRFRVVADHVRSALMIMSDGV 295 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N GRGYVLRR++RR + R+LG +P++ L P M +YPEL + E Sbjct: 296 RPSNVGRGYVLRRLLRRTVRAMRMLGVQDPVLPTLFPVSKAAMEPSYPELNDTFHEVSEA 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK----DEILNGDVAFKLYDTHGLPLDIMQDILC 406 E++ F +TL++G +LD + K D ++ G AF L+DT+G P+++ ++ Sbjct: 356 AYGEEDAFRRTLEKGTTILDLAVEKAKKEHKDDPMVGGSDAFTLHDTYGFPIELTLEMAA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-GATQFIGYDLLRG 465 +G+ +D F + + EQ+ RARA +L ++ +K+ F+GY Sbjct: 416 EQGVK-VDEAKFRELMSEQKGRARADALKKRHNVDVSVYDDIKKSLEKPIDFLGY----- 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE-IVEEAVSGQKVEVVFDQTPFYAEA 524 D ++ S V AIV+ G+ V+ + VEV+ D+TPFYAE Sbjct: 470 ----------------TDFSS--RSNVLAIVEAGKGSVKSVTAPANVEVILDRTPFYAER 511 Query: 525 GGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 GGQ+ D G I D G L++ DVQ+ + + VH + G L + ID R L Sbjct: 512 GGQIADQGEIISDDGAILEVDDVQRPIKDLIVHSCRLTEGTLSVGSPVNTNIDQVRRAAL 571 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + +H+ATH LH AL LG +Q GS + PD LRFD K + L +E VN+ I Sbjct: 572 ARSHTATHTLHKALREELGPQATQRGSVVDPDRLRFDFQWPKAVDKDALSRVEARVNERI 631 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 +L VV + M +DA GA L G KY D VRVV + G S LCGGTH STG Sbjct: 632 RDDLQVVPKEMPIDDAFKLGAMHLFGEKYGDVVRVVEI----GDGWSRELCGGTHAKSTG 687 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I ++ I+SESSI +G+RRI+A+ G+ A + + + LA + + R+E + Sbjct: 688 KIGMVTILSESSIGSGVRRIDALCGEAAYEYGAREHTLVAQLADMVNARPDELAERLESL 747 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSV-----MDALQK 818 + + + RKL E + + + +E LK+V DAL+K Sbjct: 748 LNKMK-----DSDRKLASVYEAQLNEAVPTLVDEAKNSNEKVKLALKNVGNFGSFDALRK 802 Query: 819 KI----------QSGIIMLVGISKEKKASVLIVVTEDLLDRFNAV--DLARLSAKVLGGG 866 + ++ L G++++ + ++ V T + F A DL R ++KVL GG Sbjct: 803 TVLDIRARLGEDAPVVVALAGVNEDDR-PMIAVATNEAARGFGAKAGDLVRTASKVL-GG 860 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GGGG+P AQ GG + +K D+A+ S + K Sbjct: 861 GGGGKPDFAQGGGTDASKIDEALEAAKSEVAK 892 >gi|325068847|ref|ZP_08127520.1| alanyl-tRNA synthetase [Actinomyces oris K20] Length = 782 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 296/809 (36%), Positives = 444/809 (54%), Gaps = 73/809 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR+ +L++F N HE+ PS SL+ +P+++FT +GMVPF G E+ + + Sbjct: 3 TSEIRSRWLDYFAANEHEIRPSVSLV-SPEPSILFTVAGMVPFIPYILGTEEAPWPRAAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 VQKC+R ND+DNVG T RH TFF+M GNFSFG YFKE AI AW LLT + Sbjct: 62 VQKCIRT----NDIDNVGITTRHGTFFQMNGNFSFGDYFKEGAISYAWGLLTGSREEGGY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RL++T+++ED+ + W + G+ A++I + D WS + GP G C EI +D Sbjct: 118 GLDGDRLWMTIWEEDQVSLDYWTREIGVPAERIQLLPFKDISWSTGQPGPAGSCCEIHYD 177 Query: 179 QGECI-PGGLPGSSEEGERYIEIWNLVFMQF-EQQNKQERF----ILPKMSIDTGMGLER 232 +G P G P +G+R++EIWNLVF +F + K F L + +IDTG GLER Sbjct: 178 RGPAYGPDGGPAVDIQGDRFLEIWNLVFDEFLRGEGKGHDFELLGKLDQTAIDTGAGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRS 281 +A ++Q+K N Y+ID +I+A+E+++G Y ++ V RV+ DH+RS Sbjct: 238 LAFIMQDKPNMYEIDEVFPVIKAAEELSGKVYGRGSAGPEAGEAYHDDVRMRVVADHVRS 297 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LI+DG+ P N+GRGYVLRR++RRA+ RLLG E M LL M S+YPEL Sbjct: 298 ALMLISDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVDEAAMPTLLTVSKDAMKSSYPELE 357 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD------EILNGDVAFKLYDTHG 395 I E E++ F +TL G +LD ++ K+ +++G AF+L+DT+G Sbjct: 358 TGWSTISEVAYGEEDAFRRTLAAGTTILDTAVASAKKEAGSSGRPLVSGKSAFELHDTYG 417 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSL-KEKYG 453 P+D+ ++ +G+ +D +F + EQ+ RARA + +G + +++ L KE G Sbjct: 418 FPIDLTLEMAAEQGV-DVDESAFRSLMNEQKERARADARAKKTGHADIRVFRELEKEMGG 476 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 + F+GY + + V I+ G + +VEV Sbjct: 477 GSTFLGY-----------------------TESSADATVTGILVDGVPQSVVTAPAEVEV 513 Query: 514 VFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 V D+TPF+AE GGQL D G + DG +++ DVQ +G+ VH + G + Sbjct: 514 VLDRTPFWAEMGGQLADQGTIRLADGGTVEVDDVQAPVKGLHVHRGTLTEGTIAVGEKAF 573 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 ID R ++ H++TH++H AL I+ + +Q GS +P +RFD H + S ++ Sbjct: 574 AQIDSARRLAIARAHTSTHMVHKALHEIVSDNATQAGSENSPSRMRFDFRHGSALASDQI 633 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 IE+ VN ++++L V IM+ + A A+GA AL G KY VRVVS+ GG S Sbjct: 634 SGIEERVNARLSEDLAVTDEIMDIDAARAAGAMALFGEKYGKEVRVVSI----GGDWSKE 689 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 LC GTHV STG I + ++ ESSI +G+RRI+A+ G+ A G K +L S L Sbjct: 690 LCAGTHVPSTGHIGRIAVLGESSIGSGVRRIDALVGEGA----YGYQAKEHALVSQLSTM 745 Query: 753 QGNVVGRVEEIWEEYRKL--QLIHAKRKL 779 G GR E++ E L +L A+++L Sbjct: 746 VG---GRPEDLPERVESLMARLKDAEKRL 771 >gi|294790797|ref|ZP_06755955.1| alanine--tRNA ligase [Scardovia inopinata F0304] gi|294458694|gb|EFG27047.1| alanine--tRNA ligase [Scardovia inopinata F0304] Length = 900 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 341/932 (36%), Positives = 506/932 (54%), Gaps = 91/932 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S I F+ +F+K+ H +LPS+SLI N PT +FT +GMVPF G++ P + VT+ Sbjct: 3 TSEIAKQFVTYFEKHDHLVLPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPSRRVTS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AI AW+LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKAEAIHYAWELLTLPQDQGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 ++ +L++T Y +DEEA LWK G+ + + + DNFW+ GP GPCSEI+ D Sbjct: 118 GFNKDKLWVTTYTDDEEARSLWKN-EGMDPEHMQVLGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN---KQERFILPKMS---IDTGMGLE 231 +G E G P + E RYIEIW+LVF FE N K + I+ +++ IDTGMGLE Sbjct: 177 RGPEYGSDGGPIADEN--RYIEIWDLVFENFEVDNVKSKTDMHIVGELANKNIDTGMGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 R+A +LQ K N Y+ D +I+ +E+++G+ Y + +N V RV+ DH+RS+ ++ DG Sbjct: 235 RVAYLLQGKENIYETDEVFPVIEEAERLSGLTYGEDPHNDVRFRVVADHVRSALMIMGDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+NEGRGYVLRR++RR++ ++LG + HLLP +M +YPEL + + E Sbjct: 295 VRPSNEGRGYVLRRLIRRSIRAMKMLGVDHEVFPHLLPVSKAQMRLSYPELDDSFDEVCE 354 Query: 350 TLRSEDERFGKTLDRGLVLLD--------GVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 T E+ F +TLD+G +LD G L ++G AF L+DT+G P+++ Sbjct: 355 TAYGEEAAFRRTLDQGSSILDLAISKAKDGALKAGSDSPRVSGKDAFALHDTYGFPIELT 414 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 +I +G+ +D +F + +Q+ RARA +L K YD Sbjct: 415 TEIAREKGVE-VDQNAFRDLMAQQKRRARADAL---------------RKRHNVDLSVYD 458 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 +R K +KE PI+ T + ++ I ++ VE VE+V D Sbjct: 459 DVR--KALKE---------PIEFTGYKEYSSRGKVLAIIDEELGSVESVTGPATVELVLD 507 Query: 517 QTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +TPFYAE GGQ+ D G D G L + DVQK + ++VHH ++ G + + I Sbjct: 508 RTPFYAEQGGQMADYGQISSDKGASLDVDDVQKPVKDLYVHHCLLTEGTISLGDEVSSAI 567 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D Q R ++ H+ATH+LH + +LG +Q+GS + PD LRFD SK +TS++L I Sbjct: 568 DVQRRIGMTHAHTATHVLHKVVREVLGQKATQSGSVVDPDRLRFDFHWSKALTSSQLHQI 627 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 E VN I +L V + M A++ GA L G KY D VRVV++ DG S LCG Sbjct: 628 ESRVNARIRDDLEVTWKNMPINQALSLGAMHLFGDKYGDVVRVVTIG-SDG--WSRELCG 684 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 GTH + TG I ++SESS+ G+RRIEA+ G ++ Q + LAS L Sbjct: 685 GTHAARTGTIGSFTLLSESSVGTGVRRIEALVGDKSYEFNHSQHSLINKLASDLNSRPDE 744 Query: 756 VVGRV----EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK- 810 + R+ + + E RKL I+ K+ +ED+ ++ + + V SK + Sbjct: 745 LEERLTALEDRLKESDRKLAQIYEKQ-----IEDMIPQLVSQTQASADPVW-VASKNVGV 798 Query: 811 -SVMDALQKKI----------QSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLAR 857 ++AL+K + ++ LVG+S + ++ V T + A DLAR Sbjct: 799 FGSVEALRKAATDTRSRLGDDKPAVVALVGVSSDSGKPIICVATNAPARKNGIKAGDLAR 858 Query: 858 LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 ++K+L GGGGGG+P AQ GG + ++A+ A+ Sbjct: 859 AASKIL-GGGGGGKPDFAQGGGQDASQAEAAL 889 >gi|168042124|ref|XP_001773539.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675078|gb|EDQ61577.1| predicted protein [Physcomitrella patens subsp. patens] Length = 937 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 313/843 (37%), Positives = 441/843 (52%), Gaps = 102/843 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R TF FF+ H +PSS ++P +DPTL+F N+GM FK IF G P + +A Sbjct: 12 VRETFNSFFESKNHTFVPSSPVVPVDDPTLLFANAGMNQFKPIFLGTVDPRSARGNLKRA 71 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI AW+LLT + L Sbjct: 72 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIAWAWELLTSVYKL 130 Query: 121 DQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY T + DE D+EA +W+ + L ++ DNFW M ++GPCGPC Sbjct: 131 PKDRLYATYFGGDENLGLAADDEARDIWRGL--LPESHVLPFGCKDNFWEMGDSGPCGPC 188 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI FD+ GG SS + +EIWNLVF+QF ++ +LP +DTG+G Sbjct: 189 SEIHFDR----IGGRDASSLVNMDDPNCLEIWNLVFIQFNREQDGSLKVLPAQHVDTGLG 244 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG--------NNIVNHRVIVDHLR 280 ER+ +VLQEK +NYD DLF + A ++ TG + Y G N + +RV+ DH+R Sbjct: 245 FERVTSVLQEKMSNYDTDLFTPIFGAIQKATGAREYSGKVGKDDTDNVDMAYRVVADHIR 304 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + SF IADG P NEGR YVLRR++RRA+ Y R +L E L+ + MG A+PE Sbjct: 305 TLSFAIADGSRPGNEGREYVLRRMLRRAVRYGREVLKAQEGFFSGLVDIVVEVMGEAFPE 364 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + + I+E + E+ F +TL +G+ + + KD +L AF L+DT G P+D Sbjct: 365 LKKNQAKIKEIISEEESSFSRTLVKGIEKFKKAAAEV-KDGVLGAQDAFILWDTFGFPID 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + + + GL +D FN+ +EE R +AR + G G + E +Q Sbjct: 424 LTELMAEEMGLK-VDKEGFNRTMEEAREKARG-ARGKAGGKA-----LVMEAEATSQLQK 476 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 +L + K + K P + VKAI EE+ S + V +V D T Sbjct: 477 LGILP----TDDKPKYIWHKNP-------TVTVKAIFTSSGF-EESTSDEDVGIVLDTTS 524 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH--AIVERGILRTEMSLVLTIDY 577 +YAE GGQ+ DTG G + +VQ G +V H +I G + + +DY Sbjct: 525 YYAEQGGQIYDTGVLEGPNGAFTVREVQ--IYGGYVLHIGSINNGGKISVGDKVTSQVDY 582 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R ++ NH+ THLL++AL +LG H+ Q GS + PD LRFD +H KPI S +L IE Sbjct: 583 ARRAVVAPNHTCTHLLNYALKEVLGDHIDQKGSLVAPDKLRFDFSHGKPIDSKDLGEIE- 641 Query: 638 NVNDIIAQNLPVVTRIMNREDAIAS-----GAAALLGTKYNDRVRVVSV----------- 681 I+AQ + + +E ++A G A+ G Y D VRVV++ Sbjct: 642 ---AIVAQQIRDGMTVYAKEASLAEAKRIMGLRAVFGEVYPDPVRVVAIGRPVEDLLADP 698 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR--------- 732 E + S+ CGGTH+S+T E +VSE I G+RR+ A+T A+ Sbjct: 699 ENPNWAKLSTEFCGGTHLSNTKEAEAFALVSEEGIAKGVRRVTALTMGAAKEAIHQSEVF 758 Query: 733 SHLMGQDEKLKSLA-----SFLKVSQGNVV----------GRVEEIWEEYRKLQLIHAKR 777 S + + KL+ A + LK S NVV R+ E+ E RK Q A Sbjct: 759 SSQIDKASKLEGPALEKEVASLKNSLENVVIPAAKKAEFRTRLGELQERIRKAQKAAAGS 818 Query: 778 KLQ 780 LQ Sbjct: 819 NLQ 821 >gi|317036398|ref|XP_001398230.2| alanyl-tRNA synthetase, cytoplasmic [Aspergillus niger CBS 513.88] Length = 1019 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 293/776 (37%), Positives = 424/776 (54%), Gaps = 82/776 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL++F++NGH + SS ++P +DPTL+FTN+GM FK+IF G P ++ Sbjct: 74 VRDTFLQYFKENGHTFVASSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFANLKSA 133 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + LD Sbjct: 134 VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKDAIRYSWELLTKIYGLD 193 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RRLY+T + + D EA LWK + G+ D I+ DNFW M + GPCGPCS Sbjct: 194 PRRLYVTYFEGNKEGGLEPDLEAKDLWKAV-GVPEDHILPGNMKDNFWEMGDQGPCGPCS 252 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 253 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNRETDRSLRPLPNKHVDTGMGF 308 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ +VLQ K++NYD D+F + Q VTG + Y G + I +RVI DH+R+ Sbjct: 309 ERLVSVLQNKSSNYDTDVFTPIFQTIRDVTGAREYRGCFGSDDADGIDTAYRVIADHVRT 368 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 F I+DG +P N+GRGYV+RR++RR YAR E ++P + ++G +PE Sbjct: 369 LMFAISDGAVPNNDGRGYVIRRVLRRGARYARKYFGVEIGNFFSKIVPTVVDQLGDMFPE 428 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGL 396 L + + + E L E+ F KTLDRG + G D++ DV ++LYDT G Sbjct: 429 LRRKQPDVMEILDEEEMSFAKTLDRGERQFEHYAQQAKAKGADKLHGADV-WRLYDTFGF 487 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL ID ++ EE RSRA+ S G + E + + Sbjct: 488 PVDLTRIMAEERGLQ-ID----DREFEEARSRAKEASRGQKKTSAETVKLDV-------- 534 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEI---VEEAVSG 508 +DL + + + P D T +++ VKAI +E G Sbjct: 535 ---HDLGK--------LEAMNDVPKTDDTAKFGKGNITAQVKAIYHGKTFHSSTDEVPDG 583 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRT 567 +++ ++ D+T FYAE GGQ DTG + DG L++ DVQ A G +H ++ G Sbjct: 584 EQLGIILDRTNFYAEQGGQENDTGKIVIDGQSELEVGDVQLYA-GYVLHTGFMKYGSFSV 642 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 +++ D R + NH+ TH+L+ AL T+LG V Q GS + + LRFD +H I Sbjct: 643 GDTVICEYDELRRWPIRNNHTGTHILNFALRTVLGDGVEQKGSLVAAEKLRFDFSHKSAI 702 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDG 686 + +L IE+ + I QN V ++ + A SG A+ G Y D VRVVSV E G Sbjct: 703 SDKDLARIEEISTEYIRQNCTVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVELG 762 Query: 687 GVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + S CGGTHV TG+I L ++ E I GIRRI A+TG+ A Sbjct: 763 EILQNVKDPRWKEVSIEFCGGTHVQKTGDIKDLIVLEEGGIAKGIRRIIAVTGEDA 818 >gi|330934785|ref|XP_003304705.1| hypothetical protein PTT_17354 [Pyrenophora teres f. teres 0-1] gi|311318587|gb|EFQ87206.1| hypothetical protein PTT_17354 [Pyrenophora teres f. teres 0-1] Length = 966 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 289/783 (36%), Positives = 425/783 (54%), Gaps = 81/783 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 + + +R TFL++F++ GH +PSSS++P +DPTL+FTN+GM +K+IF G P Sbjct: 11 SAARVRQTFLDYFKERGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFQGTVDPSSDFAQ 70 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI W+LLT Sbjct: 71 LKRAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIGFTWELLTGV 130 Query: 118 FDLDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 + +D +RLY+T + + D EA +LWK + G+ D I+ DNFW M + GPCGP Sbjct: 131 YGIDPQRLYVTYFEGADGLEPDLEAKELWKSV-GVPEDHILPGDMKDNFWEMGDQGPCGP 189 Query: 172 CSEIFFDQGECIPGGLPGSSE----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CSE+ +D E G + + IEIWN VFMQ+ ++ + LP IDTG Sbjct: 190 CSEVHYDLREPEGGKYRNVASLVNMDDPEVIEIWNNVFMQYNREPDRSLRPLPNKHIDTG 249 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278 MG ER+ +VLQ K +NYD D+F L + + +TG + Y G + I +RV+ DH Sbjct: 250 MGYERLVSVLQHKKSNYDTDVFTPLFKKIQDITGAREYRGKFGAEDPDGIDTAYRVVADH 309 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336 +R SF IADG +P N GRGYV+RR++RR YAR T+ ++P L +MG Sbjct: 310 VRMMSFAIADGGVPNNVGRGYVVRRVLRRGARYARKYFETDIGDFFSKIVPTLVEQMGDM 369 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTH 394 +PE+ + + I E L E++ F K+LDRG V+ + + + + L GD ++LYDT+ Sbjct: 370 FPEIKKKQQDIIEILDEEEKAFAKSLDRGEVIFEKYAQKAKVKGSDALPGDDVWRLYDTY 429 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + RGL ID ++ +++ + +AR S G +K A Sbjct: 430 GFPVDLTKLMAEERGLK-ID----DKEVDDAQEKAREASKG--------------DKKAA 470 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN--------GVSSIVKAIVQQGEIV---E 503 + +D+ D L P + T+ ++S++KAI + + + Sbjct: 471 GALVKFDV--------HDLGALENMPDVPKTDDSAKYGRENITSVIKAIYHNKKFLKSTK 522 Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVER 562 E G++ V+ D+T FYAE GGQ DTG + DG + I +VQ A G +H ++ Sbjct: 523 EVPEGEQFGVLLDRTNFYAEQGGQEYDTGKLLVDGEAEISIDNVQVYA-GYVLHTGYLKY 581 Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622 G L ++ D R + NH+ TH+L++AL +LG+ V Q GS + P+ LRFD + Sbjct: 582 GELSVGSEVIAEFDELRRHPIRNNHTGTHVLNYALREVLGNEVDQKGSLVAPEKLRFDFS 641 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR---- 677 H ++ AEL +E + I ++ V + + A G A+ G Y D VR Sbjct: 642 HKAGLSDAELDKVESISSKYIKEDAQVYAKDVPLASAKEIRGVRAVFGETYPDPVRVVSV 701 Query: 678 -------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 + V+ E S CGGTHV TGEI L I+ ES I GIRRI A+TGQ Sbjct: 702 GVPVEELLADVKNEKWEKLSIEFCGGTHVLKTGEIKELVILEESGIAKGIRRIVAVTGQE 761 Query: 731 ARS 733 A S Sbjct: 762 AYS 764 >gi|328781428|ref|XP_395392.3| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Apis mellifera] Length = 1194 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 301/773 (38%), Positives = 429/773 (55%), Gaps = 56/773 (7%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---- 56 M IR +++FF+ GHE + SSS IP +DPTL+FTN+GM FK IF G P Sbjct: 4 MMTAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGIVDPNSDM 63 Query: 57 --VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114 + +AV + QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+ L Sbjct: 64 AKLVRAVNS-QKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICTWAWEFL 122 Query: 115 TKEFDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166 T + L RLY+T + DE DEE ++W + GLS ++ DNFW M ET Sbjct: 123 TVKLKLSSDRLYVTYFGGDEKNNLKPDEECKQIWLSL-GLSPTHVLPGNMKDNFWEMGET 181 Query: 167 GPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 GPCGP SEI +D+ G L +++ +EIWNLVF+QF ++N +LPK ID Sbjct: 182 GPCGPSSEIHYDRIGNREAAHL--VNQDDPDVLEIWNLVFIQFNRENDGNLKLLPKKHID 239 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG-------NNI-VNHRVIV 276 G+GLER+ +++Q K+ NYD DLF L A ++ T Y+G N I + +RV+ Sbjct: 240 CGLGLERLVSIIQNKSANYDTDLFMPLFDAIQKGTKAPSYQGKVGKEDINGIDMAYRVLA 299 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH R+ + +ADG +P N GRGYVLRRI+RRA+ YA L L+ + +G Sbjct: 300 DHARTITIALADGGVPDNTGRGYVLRRILRRAVRYAIEKLNAKPGFFGSLVNVVVDLLGD 359 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 +PE+ + I + + E+ +F KTL RG LL+ + L IL GDVA++LYDT+G Sbjct: 360 VFPEVTKDPQHIIDIINEEETQFLKTLSRGRNLLNRTIVKLESSNILPGDVAWRLYDTYG 419 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P D+ Q + +GL +D+I + EE + A+ S ++I + + T Sbjct: 420 FPFDLTQLMAEEKGLK-VDVIGY----EEAKKEAQLISQNKSGEVDDQINLDI---HAIT 471 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQK--PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 + + + K + KV+ K + S+I+ A+ + V+E SG++V + Sbjct: 472 ELQNEKIKPTNDIPKYNYKVISNKIYEEYEFAPCFSTII-ALRRAKTFVDEVSSGEEVGI 530 Query: 514 VFDQTPFYAEAGGQLGDTG--CAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 + DQT FYAE GGQ+ D G I D + I +VQ + G +H IV +G L+ Sbjct: 531 LLDQTNFYAEQGGQIYDEGFLTKIDDEDSEVHIKNVQVRG-GYILHIGIVSQGKLKKNDK 589 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + ID RR L NH+ATH+L++AL ILG+ V Q GS + PD LRFD T+ +T+ Sbjct: 590 VFSNIDTTRRRLLMSNHTATHVLNYALREILGTEVDQKGSLVAPDRLRFDFTNKGAMTTE 649 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV-----EYE 684 +++ +E+ N+II +N V + N A G A+ Y D VRVVS+ + E Sbjct: 650 QIRKVEEITNNIINENKMVYAKECNLGLAKTIQGLRAMFEETYPDPVRVVSIGIPVEDLE 709 Query: 685 DGGVHSSAL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + S AL CGGTH+ TG I IVSE +I GIRRI A+TG A Sbjct: 710 KNPLSSDALKTSVEFCGGTHLHYTGHIKNFIIVSEEAIAKGIRRIVALTGPEA 762 >gi|281307084|pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa gi|281307085|pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Glysa gi|281307086|pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Sersa gi|281307087|pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Amppcp gi|281307088|pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Amppcp, Ala-Amp And Pcp Length = 441 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 238/441 (53%), Positives = 309/441 (70%), Gaps = 14/441 (3%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 3 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LLT E F L Sbjct: 63 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 123 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 243 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 301 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 418 Query: 413 IDIISFNQALEEQRSRARAHS 433 +D F A+EEQR RAR S Sbjct: 419 VDEAGFEAAMEEQRRRAREAS 439 >gi|238883003|gb|EEQ46641.1| alanyl-tRNA synthetase [Candida albicans WO-1] Length = 969 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 326/973 (33%), Positives = 498/973 (51%), Gaps = 109/973 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 S +R+TFL++F+K H +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 26 ASKVRSTFLDYFKKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFASL 85 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLTK + Sbjct: 86 KRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKVY 145 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T + DE EA W K+ G+ D I+ + DNFW M + GPCG Sbjct: 146 GLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLKV-GVPEDHILPGSVEDNFWEMGDQGPCG 204 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG S+ + +E+WN+VF+Q+ ++ LP IDTG Sbjct: 205 PCSEIHYDR----IGGRNASALVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTG 260 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDH 278 MG ER+ ++LQ K +NYD D+F + ++TG++ N +RVI DH Sbjct: 261 MGFERLVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADH 320 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPL---MMHLLPALCTEMG 334 +R+ +F I DG +P NEGRGYVLRRI+RR Y R + Y P+ L+ + + Sbjct: 321 VRTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNY--PIGGFFQQLVDVVIEQNK 378 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYD 392 +PE+ ++E L E+ F KTLDRG L + +++ ++ L+G ++LYD Sbjct: 379 EIFPEISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYD 438 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+D+ + + GL ID F +A EE R ++ GSGT K Sbjct: 439 TYGFPVDLTRLMAEEAGLK-IDEEGFERAKEESREASK------GSGT----------KD 481 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQK 510 G T + D+ S+ + D K + G+ ++ +V G +++ Sbjct: 482 GKT-LVKLDVHALSELDQND---AIPKTNDEFKYGLENVKAKVVGIYDGSKFVDSIEDPS 537 Query: 511 VE--VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRT 567 ++ ++ D+TPFYAE GGQ DTG + DG + +VQ A G +H + G L Sbjct: 538 IQYGILLDKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYA-GYVLHTGNIVDGKLNV 596 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 ++ T D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H + + Sbjct: 597 GDEIIATYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQAV 656 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681 T+ EL+ IE N I N V + ++ A +G A+ G Y D VRVVS+ Sbjct: 657 TAKELEKIEAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVD 716 Query: 682 ----EYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR--- 732 + + H S CGGTHV+ TG+I L I+ ES I GIRRI A+TG A Sbjct: 717 DLLADPTNTKWHEISIEFCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGHDAHHVQ 776 Query: 733 -------------SHL---MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL------ 770 S L + ++ K K L LK +V+ + + + E++ KL Sbjct: 777 KVANEFEQEIDNASSLPFGVAKESKSKELGVALKKLSISVLDK-QRLTEKFNKLDKSIKD 835 Query: 771 -----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q K+ L + L+ + A ++H+ ++K + ++ ++K+ ++ I Sbjct: 836 NLKAKQKEETKKTLDVVNNWLNDKENASSFLVAHVPITANAKAITEAINLIKKQDKTKSI 895 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L+ +K A V E ++ NA +LA+ ++ + GG GG+ ++ Q G Sbjct: 896 YLLTGETDKVAHGCYVSDEAIVKGINANELAKAVSENI-GGKAGGKGNIVQGMGDKPQGI 954 Query: 886 DQAIAGVASFLKK 898 + AI V K+ Sbjct: 955 NTAIEEVTKLFKE 967 >gi|183601533|ref|ZP_02962903.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis HN019] gi|241190968|ref|YP_002968362.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196374|ref|YP_002969929.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219139|gb|EDT89780.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis HN019] gi|240249360|gb|ACS46300.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250928|gb|ACS47867.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178710|gb|ADC85956.1| Alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis BB-12] gi|295793957|gb|ADG33492.1| alanyl-tRNA synthetase [Bifidobacterium animalis subsp. lactis V9] Length = 899 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 335/925 (36%), Positives = 500/925 (54%), Gaps = 77/925 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I +L +F+K H ++PS+SLI N PT +FT +GMVPF G++ P + + + Sbjct: 3 TAEIAQRYLNYFKKQDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTPPSRRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 QKCVR D++ VG+T RH TFF+MLGNFSFG YFKE AI A+DLLT F Sbjct: 62 NQKCVRT----LDIEEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYDLLTSPREDGGF 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T Y +D+EA +W+ G+ + I + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWMTTYTDDDEARAMWRN-EGVDPEHIQILGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGLE 231 +G E G P + E RYIEIW+LVF + N + + L +IDTG GLE Sbjct: 177 RGPEYGKEGGPIADES--RYIEIWDLVFENYMVDNVKSKTDLHIAGELKHKNIDTGAGLE 234 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADG 289 R+A +LQ K N Y+ D +I+A+E++TG+KY N V RV+ DH+RS+ +++DG Sbjct: 235 RLAYLLQGKNNIYETDEVYPVIEAAEKITGIKYGENKEADVRMRVVADHVRSALMIMSDG 294 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+N GRGYVLRR++RR + R+LG T+P+M LLP M YPEL + E Sbjct: 295 VRPSNAGRGYVLRRLIRRTIEAMRVLGVTDPVMPQLLPVSEQAMEPNYPELANTFHDVSE 354 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL------GKDE---ILNGDVAFKLYDTHGLPLDI 400 E++ F +TL GL + D ++ K E +++GD AF L+DT+G P+++ Sbjct: 355 AAYGEEDAFRRTLTNGLEIFDMAVAKAKSTAEEAKGETTPVVSGDAAFTLHDTYGFPIEL 414 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-YGATQFIG 459 ++ +G+ +D F + + EQ+SRAR +L + K K + +F+G Sbjct: 415 TLEMAQEQGVK-VDEAKFRELMNEQKSRARQDALKKRHNVDLSEYDDFKNKLHQPIEFLG 473 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK-VEVVFDQT 518 Y + S V I+ +G AVS VEV+ D+T Sbjct: 474 YTEV-----------------------STRSRVLGIMLEGVGSVPAVSAPATVEVILDRT 510 Query: 519 PFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 PFYAEAGGQL D G I D G L++ DVQK + + V + G L TID Sbjct: 511 PFYAEAGGQLADQGEIISDDGAVLEVDDVQKPIKDLIVQQCRLIEGTLVVGAEATATIDV 570 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + R ++ +H+ATH++H AL LG +Q GS P+ LRFD S T + ++E Sbjct: 571 ERRGAIARSHTATHIVHKALREELGPQATQRGSEDAPNRLRFDFQWSTAPTKELMSAVEA 630 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VND + NL V T M +DAIA GA L G KY D VRVV++ +DG S LCGGT Sbjct: 631 RVNDRLRDNLHVSTEEMKFDDAIALGAMHLFGEKYGDVVRVVTIG-DDG--WSRELCGGT 687 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV G+I + I+SE+S+ +G+RR++A+ GQ A + + L+ L + Sbjct: 688 HVDFAGKIGQVNILSEASVGSGVRRVDALVGQSAYDFNAREHALVSQLSDTLNARPDELA 747 Query: 758 GRVE----EIWEEYRKLQLIHAKRKLQLNVEDL---SCHKIADVNFMSHIISEVDSKEL- 809 R+ ++ + R+L ++ + +L +V +L + + A V +S + S ++ Sbjct: 748 DRINTLLAKLKDSDRRLASMY-EAQLASSVPELVEAAANSTAPVVVVSKNVGHFGSFDVL 806 Query: 810 -KSVMDALQK--KIQSGIIMLVGISKEKKASVLIVVTEDLLDR--FNAVDLARLSAKVLG 864 K+VMD + + I+ L G++++ K V+ V T + + A DL R ++K+L Sbjct: 807 RKTVMDIRGRLGDDKPVIVALAGVNEDDK-PVIAVATNEAARKAGVKAGDLVRGASKML- 864 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAI 889 GGGGGG+P AQ GG + +K D A+ Sbjct: 865 GGGGGGKPDFAQGGGADASKIDAAL 889 >gi|330752142|emb|CBL87102.1| alanyl-tRNA synthetase [uncultured Flavobacteria bacterium] Length = 834 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 308/878 (35%), Positives = 479/878 (54%), Gaps = 93/878 (10%) Query: 37 MFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 MF N+GM PFK+IF G +K V QKC+R GKHNDL+ VG HHT FEMLGN+ Sbjct: 1 MFVNAGMNPFKDIFIGSKKSENGRVANTQKCLRVSGKHNDLEEVGHDTYHHTLFEMLGNW 60 Query: 97 SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSA 148 SFG YFKE AI AW+LLT+ + LD+ R+YITV++ D ++ K W K + + Sbjct: 61 SFGDYFKEEAIDWAWELLTEVYGLDENRIYITVFEGDLSDGLKRDIDSEKAWLK--HVQS 118 Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFD-QGECIPGGLPGS---SEEGERYIEIWNLV 204 +I+ + DNFW M E GPCGPCSEI FD + E + G+ +E+ + IE+WNLV Sbjct: 119 SRILSGSKKDNFWEMGEVGPCGPCSEIHFDLRNEAERKKIDGALLVNEDHPQVIELWNLV 178 Query: 205 FMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY 264 F++F++ + LP +DTGMGLER+ + K +NYD D+F I ++ +Y Sbjct: 179 FIEFQRVSDGNLSPLPDKHVDTGMGLERLVRAIGMKESNYDTDIFTPYINKLSDLSNKEY 238 Query: 265 EGNNIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPL 321 + V+ RVI DH+R+ S IADG LP+N G GYV+RRI+RRA+ Y LG+ +P Sbjct: 239 GTDETVDISFRVISDHIRAVSMAIADGQLPSNIGAGYVIRRILRRAVRYGYSNLGFRKPF 298 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI 381 ++ LLP L + + +PEL ++ +R E+ F +TL+ GL LD +S K+ I Sbjct: 299 LIDLLPVLSSSLSKTFPELEIQISMVTAVIREEELSFLRTLESGLKRLDDAISE-SKNAI 357 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 ++G AF+LYDT+G PLD+ + ++C+ +D F+ ++ Q+ R+R S ++ Sbjct: 358 ISGIRAFELYDTYGFPLDLTK-LICSEKRYNVDEDQFHLEMKNQKDRSR-------SASS 409 Query: 442 EKI--WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499 +K+ W + G +FIG++ +S +++ Sbjct: 410 KKVGDWIEMSSGRG-DEFIGFE--------------------------ANSSKSKLIRYR 442 Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559 I E+ G+ ++V+ TPFY E GGQ+GD G +G + + + K+ G+ +HH Sbjct: 443 HI--ESSKGKSIQVLIAPTPFYPEGGGQVGDIGIIKFEGQEINVKETTKET-GMIIHHLY 499 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 E + ++ ++ +NR ++S NHSATHL+H+AL ILGSHV Q GS + +G RF Sbjct: 500 DEPKVWSK--NVFAQVNMKNRERVSENHSATHLVHYALRKILGSHVEQRGSLVHAEGFRF 557 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR---EDAIASGAAALLGTKYNDRV 676 D +H + +++A++ SIE V +I + T+I N A GA AL G KY D V Sbjct: 558 DFSHFQKVSNAQINSIESLVRSLITDKIK--TQIHNEIPINSAKKMGAMALFGEKYGDFV 615 Query: 677 RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736 RVV S LCGGTHV T I+ I SES + AGIRRIEA++G A +L+ Sbjct: 616 RVVQFG------ESVELCGGTHVEDTSNILTFIIKSESGVAAGIRRIEALSGAAAIDYLL 669 Query: 737 GQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL----QLNVEDL------ 786 + ++ L + + N V E+I + K+Q++ ++KL Q+ V +L Sbjct: 670 DKSKRYD-----LALKESNQVDPEEKI--KSLKVQVLGIEKKLISFNQMRVSNLKSELIK 722 Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846 S + ++ II +++S +K ++ ++ + +++L+ + + + + + V D Sbjct: 723 SSKDYGTLKVVAEII-DLESSYVKDLVFLIKDNYPTAVVLLLSVIGD-RVQMHLGVGSDS 780 Query: 847 LDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG--PNG 882 NA + + + GGGGG+P A SGG P+G Sbjct: 781 TPHVNAGNWVK-ELSLFIKGGGGGQPSYASSGGKFPDG 817 >gi|224064089|ref|XP_002186563.1| PREDICTED: alanyl-tRNA synthetase [Taeniopygia guttata] Length = 968 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 308/857 (35%), Positives = 460/857 (53%), Gaps = 90/857 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SSS IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASQIRQRFIDFFRENKHTYVHSSSTIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A +LA +LLTKE Sbjct: 66 LSRATNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKLALELLTKE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + +E E ++W + GL+ +I+ + DNFW M +TGPC Sbjct: 126 FGIPAERLYVTYFGGNEAAGLQPDLECKQIWLDL-GLAEGRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPCSEI +D+ G+ L +++ +EIWNLVF+QF ++ LPK SIDTGM Sbjct: 185 GPCSEIHYDRIGDRDASHL--VNQDDPNVLEIWNLVFIQFNREADGTLKPLPKKSIDTGM 242 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--------YEGNNI-VNHRVIVDHL 279 GLER+ +VLQ K +NYD DLF +A ++ TG + + + I + +RV+ DH Sbjct: 243 GLERLVSVLQNKMSNYDTDLFLPYFEAIQKGTGARPYLGQVGAEDADGIDMAYRVLADHA 302 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYP 338 R+ + ++DG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+P Sbjct: 303 RTITLALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLNAPKGFFATLVDVVVQSLGDAFP 362 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL + ++++ + E+++F KTL RG +LD + LG +++ GD A+ LYDT+G P Sbjct: 363 ELKKDPDMVKDIINEEEDQFLKTLSRGRRILDRKIQSLGDSKVIPGDTAWLLYDTYGFPA 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ I +GL +D+ F EE+R A+ S G G+G + + Sbjct: 423 DLTGLIAEEKGLV-VDMEGF----EEERKNAQLKSQGKGAGGED--------------LL 463 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQ 509 D+ + + +V P + + +S + VKAI ++ + VEE +GQ Sbjct: 464 MLDIYAIEELRAQGLEVTDDSPKYNYASDLSGTYDFGSLVATVKAIRREKKFVEEVSTGQ 523 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERG 563 + +V D+T FYAE GGQ+ D G + D + +VQ + G +V H G Sbjct: 524 ECGIVLDRTCFYAEQGGQIYDQGYMVKDDDSREDKTEFTVKNVQVR--GGYVLHIGTLYG 581 Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623 L+ + LTID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 582 SLKVGDQVHLTIDEARRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTA 640 Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV- 681 +++ E+K +E N +I ++ V + +A A G A+ Y D VRVVS+ Sbjct: 641 KGALSTQEIKKVEGIANQMIEESKTVYAKDCPLAEAKAIQGLRAVFDETYPDPVRVVSIG 700 Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A Sbjct: 701 IPVEELLADPSGPGGSITSIEFCGGTHLQNSSHAGSFVIVSEEAIAKGIRRIVAVTGAEA 760 Query: 732 RSHLMGQD---EKLKSLASFLKVSQG---NVVGRVEEIWE--------EYRKLQLIHAKR 777 R L D + L +L + +KV +V + ++ E +++K +L A + Sbjct: 761 RKALRKVDSLRKLLSALEAKVKVQTAPNKDVQKEITDLGETLATAIIPQWQKDELREAVK 820 Query: 778 KLQLNVEDLSCHKIADV 794 L+ ++DL AD+ Sbjct: 821 ALKKVMDDLDRASKADI 837 >gi|149640710|ref|XP_001506284.1| PREDICTED: similar to Alanyl-tRNA synthetase isoform 2 [Ornithorhynchus anatinus] Length = 963 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 304/802 (37%), Positives = 433/802 (53%), Gaps = 79/802 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 SASEIRQRFIDFFKRNRHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + D D E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGNEAAGLDPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + +++ +EIWNLVF+QF ++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + Y G + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYMGQVGADDTDGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + +ADG P N GRGYVLRRI+RRA+ Y+ L ++ L+ + +G A Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASKGFFATLVDVVVQSLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G Sbjct: 361 FPELKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDGKTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ I +GL +D+ F EE+R A+ S G G+G + I + Y + Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS-------SIVKAIVQQGEIVEEAVSGQ 509 DL +V P + S S VKA+ ++ V+E +GQ Sbjct: 473 LRARDL-----------EVTDDSPKYNYRANASGSYGRFPSTVKALRREKTFVDEVSTGQ 521 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGD---GIRLQITDVQKKAEGIFVHHAIVERGILR 566 + VV D+T FYAE GGQ+ D G + D + +VQ + G +V H G L+ Sbjct: 522 ECGVVLDKTCFYAEQGGQIFDEGYLVKDDDGSEDFTVKNVQVR--GGYVLHIGTVYGNLK 579 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 580 VGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGA 638 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE--- 682 +++ E+K E+ N +I PV + A A G A+ Y D VRVVS+ Sbjct: 639 MSTQEIKKTEEIANGMIQAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 698 Query: 683 ---YED-----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734 ED G + S CGGTH+ ++G IVSE +I GIRRI A+TG A+ Sbjct: 699 AELLEDPSSPAGSLTSVEFCGGTHLRNSGHAGAFVIVSEEAIAKGIRRIVAVTGTEAQKA 758 Query: 735 LMGQDEKLKSLASFLKVSQGNV 756 L K +SL + L V + V Sbjct: 759 L----RKAESLKTALSVLEAKV 776 >gi|150864558|ref|XP_001383420.2| Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS) [Scheffersomyces stipitis CBS 6054] gi|149385814|gb|ABN65391.2| Alanyl-tRNA synthetase, cytoplasmic (Alanine--tRNA ligase) (AlaRS) [Scheffersomyces stipitis CBS 6054] Length = 954 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 316/928 (34%), Positives = 477/928 (51%), Gaps = 100/928 (10%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 S +R+TFL++F K H+ +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 11 ASKVRSTFLDYFTNKRDHKFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTADPASDLAS 70 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK AI AW+LLT+ Sbjct: 71 LKRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKPEAITWAWELLTEV 130 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD+ RLY+T ++ D EA W K+ G++ D I+ DNFW M + GPC Sbjct: 131 YGLDKDRLYVTYFEGDAKQGLEPDLEAKSFWLKV-GVAEDHILPGNAKDNFWEMGDQGPC 189 Query: 170 GPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG +S ++ +E+WN+VF+Q+ ++ LP IDT Sbjct: 190 GPCSEIHYDR----IGGRNAASLVNQDDPNVLEVWNIVFIQYNREADSSLKTLPAKHIDT 245 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMG ER+ +VLQ+K++NYD D+F + +TG++ G +RVI D Sbjct: 246 GMGFERLVSVLQDKSSNYDTDVFLPIFDKIRDITGIRPYGGKFGAEDTDGIDTAYRVIAD 305 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGS 335 H+R+ +F I DG +P N+G GYVLRRI+RR Y R + Y L+ + + Sbjct: 306 HVRTLTFAICDGGVPNNDGAGYVLRRILRRGSRYVRKYMNYPIGSFFQQLVDVVIEQNKE 365 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDT 393 +PE++ ++E L E+ F KTLDRG L + +++ ++ L+G ++LYDT Sbjct: 366 IFPEIVHGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDT 425 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G P D+ + + GL ID +F +A E + ++A G + SL E Sbjct: 426 YGFPSDLTRLMAEEAGLK-IDEPAFEKARLESKEASKAIGNKDGVELVKLDVHSLSELDS 484 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG-VSSIVKAIVQQGEIVEEAVSGQKVE 512 D +K+ +E+ K Q I ++G V SI + VQ G Sbjct: 485 NANVSKTD--DSAKYGRENIKATIQ--AIYSSSGFVDSIDDSSVQYG------------- 527 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 V+ D+TPFYAE GGQ+ DTG + DG +T+VQ G +H + G L + + Sbjct: 528 VLLDKTPFYAEQGGQIYDTGKLVIDGKAEFNVTNVQVYG-GYVLHTGNIVEGSLNVKDDV 586 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + T D R + NH+ TH+L++AL +LG V Q GS + P+ LRFD +H + +T E Sbjct: 587 IATYDELRRWPIRNNHTGTHVLNYALREVLGDSVDQRGSLVAPEKLRFDFSHKQALTPKE 646 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--------- 681 L ++E N+ I N V + ++ +A +G A+ G Y D VRVVS+ Sbjct: 647 LAAVESISNEYIKSNKEVFYKDVSLNEAREINGLRAVFGETYPDPVRVVSIGVPVEDLLA 706 Query: 682 EYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS------ 733 E + H S CGGTHV+ TG+I L ++ ES I GIRRI A+TG A + Sbjct: 707 EPKKADWHKVSIEFCGGTHVAKTGDIKDLVVIEESGIAKGIRRIVAVTGHDAHAVQKIAS 766 Query: 734 -------HLMG------QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL---------- 770 H G ++ K K L LK +V+ + +++ E++ K+ Sbjct: 767 EFEAELDHAAGLPFGSVKETKAKELGVALKKLSISVLDK-QKLTEKFNKIDKSIKDDLKT 825 Query: 771 -QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 Q K+ L + E L D ++H+ ++K + + L+K + + L+ Sbjct: 826 KQKAETKQTLDVVNEWLEKKDAGDY-LVAHVPINANAKAITEAFNLLKKSHKDKSLYLIT 884 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLAR 857 +K A + E + NA DLA+ Sbjct: 885 GLTDKVAHGCYIADEAIAKGVNASDLAQ 912 >gi|115490933|ref|XP_001210094.1| alanyl-tRNA synthetase [Aspergillus terreus NIH2624] gi|114196954|gb|EAU38654.1| alanyl-tRNA synthetase [Aspergillus terreus NIH2624] Length = 968 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 293/778 (37%), Positives = 420/778 (53%), Gaps = 79/778 (10%) Query: 7 IRTTFLEFFQKNGH---------ELLPS---SSLIPCNDPTLMFTNSGMVPFKNIFTGQE 54 +R TFL++F+KNGH +LPS S ++P DPTL+FTN+GM FK+IF G Sbjct: 16 VRDTFLDYFKKNGHTFGIATVARSILPSFASSPVVPLADPTLLFTNAGMNQFKSIFLGTV 75 Query: 55 KPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114 P T C+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ +W+LL Sbjct: 76 DPNSDFATLKSACIRAGGKHNDLDDVGKDGYHHTFFEMLGNWSFGDYFKKEAIRYSWELL 135 Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166 T + LD +RLY+T + + D EA +LWK + G+ D I+ DNFW M + Sbjct: 136 TTVYGLDPQRLYVTYFEGHKEGGLEPDLEAKELWKAV-GVPDDHILPGNMKDNFWEMGDQ 194 Query: 167 GPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 GPCGPCSE+ +D+ GG + + + +EIWN VF+Q+ ++ + LP Sbjct: 195 GPCGPCSEVHYDR----IGGRNAAHLVNMDDPNVLEIWNNVFIQYNREADRSLRPLPNKH 250 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRV 274 IDTG+G ER+ ++LQ+K++NYD D+F L A +TG + Y+G + +RV Sbjct: 251 IDTGLGFERLVSILQDKSSNYDTDVFTPLFDAIRDITGAREYQGRFGADDVDGIDTAYRV 310 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTE 332 + DH+R+ F I+DG++P N+GRGYV+RR++RR YAR E L+P + + Sbjct: 311 VADHIRTLMFAISDGVMPNNDGRGYVIRRVLRRGARYARKYFQVEIGSFFSKLVPTVVDQ 370 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKL 390 +G +PEL + + + E L E+ F KTLDRG + S D+ L+G ++L Sbjct: 371 LGDMFPELKKKQHDVMEILDEEEISFSKTLDRGERQFEQYAQKSKTKGDDKLHGADVWRL 430 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 YDT G P+D+ + + RGL ID + F EE R RA+ S G + Sbjct: 431 YDTFGFPVDLTRLMAEERGLR-IDDLEF----EEARLRAKEASKG--------------Q 471 Query: 451 KYGATQFIGYDLLRGSKFMK-EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAV 506 K A + D+ K K ED N +++ VKAI E Sbjct: 472 KKAAADAVKLDVHDLGKLEKMEDVHKTDDSAKFGREN-ITAQVKAIYHGKSFCTSTSEIT 530 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565 +G+++ ++ D+T FYAE GGQ DTG + DG L++ DVQ G +H ++ G Sbjct: 531 AGEQLGIILDRTNFYAEQGGQENDTGRIVIDGQAELEVGDVQLYG-GYVLHTGFMKYGSF 589 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 S++ D R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H Sbjct: 590 SVGDSVICEYDELRRWPIRNNHTGTHILNFALREVLGDGIEQKGSLVAAEKLRFDFSHKS 649 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684 P+T AEL+ +ED + I QN V ++ + A SG A+ G Y D VRVVSV E Sbjct: 650 PLTDAELQKVEDISTEYIRQNCAVYSQELPLATAREISGVRAVFGETYPDPVRVVSVGVE 709 Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + S CGGTHV TG+I L ++ ES I GIRRI A+TG+ A Sbjct: 710 LEEILKNVSDPRWEKVSIEFCGGTHVQKTGDIKDLVVLEESGIAKGIRRIIAVTGEEA 767 >gi|328772364|gb|EGF82402.1| hypothetical protein BATDEDRAFT_32863 [Batrachochytrium dendrobatidis JAM81] Length = 965 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 344/987 (34%), Positives = 507/987 (51%), Gaps = 123/987 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57 +S +R TF+++F+++GH + SSS IP DPTLMF NSGM FK IF G P + Sbjct: 7 LSKVRKTFIDYFEQHGHTHVVSSSTIPHGDPTLMFANSGMNQFKPIFLGTVDPNSDLARL 66 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 +A + QKC+RAGGKHNDL++VGR HHTFFEMLGN+SFG YFK AI++AW++LTK Sbjct: 67 SRAANS-QKCIRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGNYFKTEAIEMAWEILTKV 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLYIT + + D EA LW+ I G+ D II + DNFW M + GPC Sbjct: 126 YGLPKDRLYITYFGGDKSLGLESDIEAKHLWRNI-GVEEDHIIPGSVKDNFWEMGDQGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI FD+ GG + + + +EIWNLVFMQ+ ++ + +LP IDT Sbjct: 185 GPCSEIHFDR----IGGRNAADLVNMDDPDVLEIWNLVFMQYNREVDRSLKLLPNKHIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVD 277 GMGLER+ ++LQ+K +NYD D+F + A +++TG++ Y+G + I +RVI D Sbjct: 241 GMGLERLVSILQDKRSNYDTDVFTGIFSAIQKLTGVREYQGRLGEADQDGIDTAYRVIAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMG 334 H+R+ +F I+DG +P+NEGRGYVLRRI+RR YAR + P+ L+ + TEMG Sbjct: 301 HVRTLTFAISDGGVPSNEGRGYVLRRILRRGARYAR-KKFNVPIGCFFSSLVDTVVTEMG 359 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYD 392 A+PE+ + ++E L E+ F KTLDRG L L+ ++++G A++LYD Sbjct: 360 DAFPEITERVDDLKEILDEEERSFSKTLDRGERLFGEYLAKTKASGGKVISGADAWRLYD 419 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEK---IWFSLK 449 T+G P+D+ + + GL +D + F Q + + R+R G EK I SL Sbjct: 420 TYGFPVDLTRLMAEENGLT-VDEVEFEQEQKIAKERSR--------GRNEKETGIVVSLD 470 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 IG +L D + K D +SS VKA+ G+ VE S Sbjct: 471 -----IHAIG-ELEANPNVQPTDDQY---KYGFD---DISSKVKALFVNGKFVESVSSTN 518 Query: 510 ---KVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565 + V+ D+T FYAE GGQ DTG DG + I DVQ G +H ++ G L Sbjct: 519 HQGRFGVILDKTNFYAEQGGQQFDTGSLTVDGSLEFAIEDVQVFG-GYVLHIGYLKYGSL 577 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD----- 620 + S++ T D R L NH+ATH+L++ L +++G+ V Q GS ++P+ LRFD Sbjct: 578 SLDDSIMCTYDELRRWPLRNNHTATHVLNYGLRSVIGTIVDQKGSLVSPEKLRFDYSCKV 637 Query: 621 --------VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTK 671 + K +AEL +E N IA+N + T ++ A + +G A+ G Sbjct: 638 NKCFEYNIYSRRKIGLTAELAKVEKITNSFIAKNDIIYTSEVSLALAKSINGLRAVFGEV 697 Query: 672 YNDRVRVVSVEYE-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 Y D VRVVS+ + S CGGTHV TG+I I+ +S++ GI Sbjct: 698 YPDPVRVVSIGFPIDEMLKDPSNAKWAETSIEFCGGTHVQRTGDIKRFVIIEDSALAKGI 757 Query: 721 RRIEAITGQRARSHLMGQD------EKLKSLASFLKVSQGNVVGRV--EEIWEEYRKLQL 772 RRI +TG A + D E+L+ + L + +G+ + RK L Sbjct: 758 RRIVGVTGDEALKYQKLADEFEIKLEQLRRIKGALFETTLKEIGKTLDSSVLPVLRKHSL 817 Query: 773 --------------IHAKRKLQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVM 813 A++ L+ + + N F+S I ++K L + Sbjct: 818 KETFSAIKKDFDDKDKARKALESKEAVDTVKSFFEANPEKTVFVSVINQSGNTKALAQAI 877 Query: 814 DALQKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 A + ++ ML+ + E K + +V + L+DR A + A A +GG GG Sbjct: 878 -AHVRTLKDKAAMLIAVDPETSKVAHQCIVPQILIDRGLKATEWADAVASKVGGKKGGSE 936 Query: 872 PHMAQSGGPNGNKADQAIAGVASFLKK 898 AQ G +A+ +F+ K Sbjct: 937 S-AAQGAGDRAASVQEAVDAATAFIAK 962 >gi|68475751|ref|XP_718082.1| hypothetical protein CaO19.5746 [Candida albicans SC5314] gi|68475886|ref|XP_718016.1| hypothetical protein CaO19.13169 [Candida albicans SC5314] gi|74586350|sp|Q5A8K2|SYA_CANAL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|46439761|gb|EAK99075.1| hypothetical protein CaO19.13169 [Candida albicans SC5314] gi|46439836|gb|EAK99149.1| hypothetical protein CaO19.5746 [Candida albicans SC5314] Length = 969 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 326/973 (33%), Positives = 497/973 (51%), Gaps = 109/973 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 S +R+TFL++F+K H +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 26 ASKVRSTFLDYFKKQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFASL 85 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLTK + Sbjct: 86 KRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKVY 145 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T + DE EA W K+ G+ D I+ + DNFW M + GPCG Sbjct: 146 GLQEDRLYVTYFGGDEKQGLEPDLEAKNFWLKV-GVPEDHILPGSVEDNFWEMGDQGPCG 204 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG S+ + +E+WN+VF+Q+ ++ LP IDTG Sbjct: 205 PCSEIHYDR----IGGRNASALVNMDDPNVLEVWNVVFIQYNREADGNLRTLPNKHIDTG 260 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDH 278 MG ER+ ++LQ K +NYD D+F + ++TG++ N +RVI DH Sbjct: 261 MGFERLVSILQNKYSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADH 320 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPL---MMHLLPALCTEMG 334 +R+ +F I DG +P NEGRGYVLRRI+RR Y R + Y P+ L+ + + Sbjct: 321 VRTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNY--PIGGFFQQLVDVVIEQNK 378 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYD 392 +PE+ ++E L E+ F KTLDRG L + +++ ++ L+G ++LYD Sbjct: 379 EIFPEISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYD 438 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+D+ + + GL ID F +A EE R ++ GSGT K Sbjct: 439 TYGFPVDLTRLMAEEAGLK-IDEEGFERAKEESREASK------GSGT----------KD 481 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQK 510 G T + D+ S+ + D K + G+ ++ +V G +++ Sbjct: 482 GKT-LVKLDVHALSELDQND---AIPKTNDEFKYGLENVKAKVVGIYDGSKFVDSIEDPS 537 Query: 511 VE--VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRT 567 ++ ++ D+TPFYAE GGQ DTG + DG + +VQ A G +H + G L Sbjct: 538 IQYGILLDKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYA-GYVLHTGNIVDGKLNV 596 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 ++ T D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H + + Sbjct: 597 GDEIIATYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQAV 656 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681 T+ EL+ IE N I N V + ++ A +G A+ G Y D VRVVS+ Sbjct: 657 TAKELEKIEAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVD 716 Query: 682 ----EYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR--- 732 + + H S CGGTHV+ TG+I L I+ ES I GIRRI A+TG A Sbjct: 717 DLLADPTNTKWHEISIEFCGGTHVAKTGDIKDLVIIEESGIAKGIRRIVAVTGHDAHHVQ 776 Query: 733 -------------SHL---MGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL------ 770 S L + ++ K K L LK +V+ + + + E++ KL Sbjct: 777 KVANEFEQEIDNASSLPFGVAKESKSKELGVALKKLSISVLDK-QRLTEKFNKLDKSIKD 835 Query: 771 -----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q K+ L + L+ + A ++H+ ++K + ++ ++K+ ++ I Sbjct: 836 NLKAKQKEETKKTLDVVNNWLNDKENASSFLVAHVPITANAKAITEAINLIKKQDKTKSI 895 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L+ +K A V E + NA +LA+ ++ + GG GG+ ++ Q G Sbjct: 896 YLLTGETDKVAHGCYVSDEAIAKGINANELAKAVSENI-GGKAGGKGNIVQGMGDKPQGI 954 Query: 886 DQAIAGVASFLKK 898 + AI V K+ Sbjct: 955 NTAIEEVTKLFKE 967 >gi|421855|pir||S32671 alanine-tRNA ligase (EC 6.1.1.7) - Arabidopsis thaliana (fragment) Length = 989 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P + +A Sbjct: 50 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 109 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 110 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 168 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC Sbjct: 169 PTDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 226 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EI +D+ G L + + +EIWNLVF+QF +++ LP +DTGMG E Sbjct: 227 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 284 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282 R+ +VLQ K +NYD D+F + ++ TG + + + +RV+ DH+R+ Sbjct: 285 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 344 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341 SF IADG P NEGR YVLRRI+RRA+ Y + +L E L+ ++ MG + EL Sbjct: 345 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 404 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + + I + ++ E+ F KTL +G+ + + L+GD AF L+DT+G PLD+ Sbjct: 405 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 463 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + RGL +D+ FN+A+EE R R+R S + K Sbjct: 464 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 499 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512 G+ M D K + T+ S +KAI +E + + V Sbjct: 500 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 556 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569 +V T FYAE GGQ+ DTG G + +VQ G FV H E G + Sbjct: 557 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 614 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ +DY+ R+ ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ Sbjct: 615 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 674 Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681 +L+ IE VN I L V ++ +++ I G A+ G Y D VRVVS+ Sbjct: 675 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEAYPDPVRVVSIGRKVED 733 Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E + + SS CGGTH+++T E ++SE I GIRR+ A+T + A Sbjct: 734 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 788 >gi|71022301|ref|XP_761380.1| hypothetical protein UM05233.1 [Ustilago maydis 521] gi|46097613|gb|EAK82846.1| hypothetical protein UM05233.1 [Ustilago maydis 521] Length = 990 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 292/778 (37%), Positives = 426/778 (54%), Gaps = 78/778 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57 + +R TF +FQ+ H +PSSS IP +DPTL+F N+GM +K IF G P + Sbjct: 24 ATKVRDTFTGYFQERKHTFVPSSSTIPYDDPTLLFANAGMNQYKPIFLGIADPNSSFGSM 83 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 +AV + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI++AW+LLTK Sbjct: 84 KRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEMAWELLTKV 142 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLY+T ++ D EA LW K+ G+ D I+ DNFW M TGPC Sbjct: 143 YGLPKDRLYVTYFEGDAKQGLEPDLEARDLWLKV-GVDEDHILTGDAKDNFWEMGATGPC 201 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + +++ IEIWN VFMQF +++ LP IDT Sbjct: 202 GPCSEIHYDR----IGGRNAADLVNKDDPNVIEIWNNVFMQFNREDDGSLRPLPAKHIDT 257 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVD 277 GMG ER+ ++LQ+K +NYD D+F + +Q+TG + Y G + I +RV+ D Sbjct: 258 GMGFERLVSILQDKPSNYDTDVFTPIFNKIQQLTGARAYTGKLGAEDKDGIDTAYRVVAD 317 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMG 334 H+R+ +F I+DG +P +GRGYVLRRI+RR Y R + P+ L+P L +MG Sbjct: 318 HVRTLTFAISDGGVPDRDGRGYVLRRILRRGTRYVRKY-FQVPIGSFFSQLVPTLVEQMG 376 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYD 392 +PE+ + ++ L E+ F +TLDRG L + + ++ L+G+ +KLYD Sbjct: 377 HFFPEITKKVDDVKAILDEEEASFARTLDRGERLFEEYAAKAKAAGNKQLSGNDVWKLYD 436 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T G P+D+ + +GL G++ F A E + ++A G G TE + F + + Sbjct: 437 TFGFPVDLTLIMAEEQGL-GVNEKEFEAAQAESKEISKA---GGKKGETEAVKFDVHD-- 490 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI---VKAIVQQGEIVEEAVS-- 507 +G+ +++D V K D GV+++ VKAI Q V+ Sbjct: 491 -----LGH--------LEKDSSV--PKTQDDFKYGVNTVKASVKAIYQDHAFVDNTSKIG 535 Query: 508 --GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565 + ++ D+T YAE+GGQ DTG + DG + + + G +H ++ G L Sbjct: 536 DRAKNFGILLDRTCLYAESGGQQADTGSIVIDGKTEFVVEDAQVFSGYVLHIGHLKHGEL 595 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 +V++ D R L NH+ATH+L+ L +LG H+ Q GS + P LRFD +H + Sbjct: 596 GLNDEVVVSYDQSRRGPLQSNHTATHILNFGLREVLGDHIDQKGSLVAPTKLRFDFSHKQ 655 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684 + ELK IED D I +++ V ++ M + A G A+ G Y + VRVV++EY+ Sbjct: 656 GVNVQELKKIEDISIDWIKRDVGVYSKEMPLDTAQKIPGLRAVFGEAYPNPVRVVTLEYD 715 Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + S CGGTHV+ TGEI I ES I GIRRI A+TG A Sbjct: 716 LDTIADDIENTKWRGTSVEFCGGTHVAKTGEIGEFVITEESGIAKGIRRIIAVTGNEA 773 >gi|1673366|emb|CAA80381.1| cytosolic tRNA-Ala synthetase [Arabidopsis thaliana] Length = 955 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P + +A Sbjct: 16 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 76 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 134 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC Sbjct: 135 PTDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 192 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EI +D+ G L + + +EIWNLVF+QF +++ LP +DTGMG E Sbjct: 193 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 250 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282 R+ +VLQ K +NYD D+F + ++ TG + + + +RV+ DH+R+ Sbjct: 251 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 310 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341 SF IADG P NEGR YVLRRI+RRA+ Y + +L E L+ ++ MG + EL Sbjct: 311 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 370 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + + I + ++ E+ F KTL +G+ + + L+GD AF L+DT+G PLD+ Sbjct: 371 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 429 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + RGL +D+ FN+A+EE R R+R S + K Sbjct: 430 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 465 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512 G+ M D K + T+ S +KAI +E + + V Sbjct: 466 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 522 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569 +V T FYAE GGQ+ DTG G + +VQ G FV H E G + Sbjct: 523 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 580 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ +DY+ R+ ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ Sbjct: 581 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 640 Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681 +L+ IE VN I L V ++ +++ I G A+ G Y D VRVVS+ Sbjct: 641 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEAYPDPVRVVSIGRKVED 699 Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E + + SS CGGTH+++T E ++SE I GIRR+ A+T + A Sbjct: 700 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 754 >gi|146421805|ref|XP_001486846.1| hypothetical protein PGUG_00223 [Meyerozyma guilliermondii ATCC 6260] gi|146387967|gb|EDK36125.1| hypothetical protein PGUG_00223 [Meyerozyma guilliermondii ATCC 6260] Length = 964 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 324/970 (33%), Positives = 503/970 (51%), Gaps = 104/970 (10%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 S +R+TFL++F +K+GH+ +PSSS++P NDPTL+F N+GM +K IF G P Sbjct: 22 ASKVRSTFLDYFKEKHGHQFVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASEMST 81 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 ++ QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI+ AW+LLT Sbjct: 82 WKRAVNSQKCIRAGGKHNDLEDVGQDSYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTDV 141 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD RLY+T ++ DE EA + W G++ D I+ DNFW M + GPC Sbjct: 142 YKLDPDRLYVTYFEGDEKLGLGPDLEAKQFWLD-RGVAEDHILTGDAKDNFWEMGDQGPC 200 Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPCSEI +D+ G L + +EIWNLVFMQ+ ++ LP IDTG+ Sbjct: 201 GPCSEIHYDRIGNRNAAHLVNMDD--PNVLEIWNLVFMQYNREPDSSLRPLPAKHIDTGL 258 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHL 279 G ER+ ++LQ+K++NYD D+F+ + +++G++ Y G + I +RVI DH+ Sbjct: 259 GFERLVSILQQKSSNYDTDVFQPIFDKIREISGVRPYTGKFGSEDKDGIDTAYRVIADHV 318 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR--LLGYTEPLMMHLLPALCTEMGSAY 337 R+ +F I DG +P NEGRGYVLRRI+RR Y R L L+P + + + Sbjct: 319 RTLTFAITDGGVPNNEGRGYVLRRILRRGARYVRKYLNCPIGSFFQQLVPVVIEQNSEIF 378 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHG 395 PE+++ ++E L E+ F KTLDRG L + +++ ++ L+G ++LYDT+G Sbjct: 379 PEILRNMQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTYG 438 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + GL ID EE +AR S ++ K G++ Sbjct: 439 FPVDLTRLMAAEAGLK-ID--------EEGFEKARLESWEASKASSNK---------GSS 480 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVS--GQKV 511 Q + D+ S+ D K G+ + +V G ++VS GQ+V Sbjct: 481 QLVKLDVHALSEL---DSNANIPKTNDSYKYGLDDVKAEVVGIYDGSSFVDSVSEVGQQV 537 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 ++ D+T FYAE GGQ D G + DG ++ +VQ G +H + G L+ + Sbjct: 538 GILLDKTSFYAEQGGQEYDKGKIVIDGSAEFEVDNVQVYG-GYVLHTGSIVYGTLKVKDE 596 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 ++ D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H + +T A Sbjct: 597 VLACYDELRRWPIRNNHTGTHVLNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQGLTPA 656 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------V 678 EL +E N I+ N V + + DA +G A+ G Y D VR + Sbjct: 657 ELTKVEAISNKYISDNKEVFAKDVPLADAQQINGLRAVFGETYPDPVRVVSVGVPVEDLL 716 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMG 737 + ++ S CGGTHV+ TGEI L I+ ES I GIRRI A+TG A R + Sbjct: 717 KDPKRDEWHQVSVEFCGGTHVAKTGEIKDLVIIEESGIAKGIRRIVAVTGTEAHRVQKLA 776 Query: 738 QD------------------EKLKSLASFLKVSQGNVVGRV----------EEIWEEYRK 769 +D +K K L +K +V+ + + I ++ + Sbjct: 777 KDYDSQLSEAEAMPFGSSKEQKTKELGVAIKKLSISVLDKQMLNTKFTKLDKSIKDQLKA 836 Query: 770 LQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 Q +K+ L+ L+ +D F+SHI ++K + ++ ++K+ S I L Sbjct: 837 KQKEESKKVLEAVNNWLTSEDSSDY-FVSHIDISANAKAITDAINLIKKEHNSKTIYLFA 895 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 S K + V++D + + N+ DLA L++ + GG GG+ ++ Q G + ++A Sbjct: 896 GS--DKVAHGCYVSDDAISKGVNSNDLAALASTSI-GGKAGGKGNVVQGMGDKPSGIEKA 952 Query: 889 IAGVASFLKK 898 + + + L K Sbjct: 953 VEDITAALSK 962 >gi|281307089|pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa gi|281307090|pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa gi|281307091|pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa gi|281307092|pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa gi|281307093|pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Glysa gi|281307094|pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Glysa gi|281307095|pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Sersa gi|281307096|pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Sersa Length = 441 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 237/441 (53%), Positives = 308/441 (69%), Gaps = 14/441 (3%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 3 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 62 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW LLT E F L Sbjct: 63 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFAL 122 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 123 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 182 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DT MGLER Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTAMGLER 242 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 243 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 300 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLR 352 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ L+ Sbjct: 301 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLK 360 Query: 353 SEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 +E+E+F +TL+RGL LLD L+ L D L+G+ AF+LYDT+G P+D+ D+ R + Sbjct: 361 TEEEQFARTLERGLALLDEELAKLSGD-TLDGETAFRLYDTYGFPVDLTADVCRERNIK- 418 Query: 413 IDIISFNQALEEQRSRARAHS 433 +D F A+EEQR RAR S Sbjct: 419 VDEAGFEAAMEEQRRRAREAS 439 >gi|50954761|ref|YP_062049.1| alanyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07] gi|59798521|sp|Q6AFA1|SYA_LEIXX RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|50951243|gb|AAT88944.1| alanyl-tRNA synthetase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 885 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 297/771 (38%), Positives = 426/771 (55%), Gaps = 58/771 (7%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I +L+FF + GH ++PS+SL+ +DP+L+FT +GMVPF TG + T Sbjct: 2 QTAEIHRRWLDFFARRGHTVVPSASLV-SDDPSLLFTVAGMVPFVPYLTGIVPAPFPRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKC+R D++ VG+T RH TFF+M GNFSFG YFKE+AI AWDLLT Sbjct: 61 SVQKCIRT----LDIEEVGKTPRHGTFFQMCGNFSFGDYFKEQAIAFAWDLLTTAETEGG 116 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 D + L++TVY+ED+EA ++W+++SGL+ ++I + + N+WS + GP GPCSEIFF Sbjct: 117 LGFDPKDLWVTVYEEDDEAREIWRRVSGLAEERIQGLGKDTNYWSTGQPGPAGPCSEIFF 176 Query: 178 DQGEC--IPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFIL---PKMSIDTGMG 229 D+G I GG P + ++ RY+EIWNLVFMQF E K + IL PK +IDTG+G Sbjct: 177 DRGPAYGIDGG-PATDDD--RYVEIWNLVFMQFLRGEGTGKDDFEILGDLPKKNIDTGLG 233 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----VNHRVIVDHLRSSSFL 285 LER+A + Q N Y+ID + ++ + ++ G Y GN V RV+ DH+RS+ L Sbjct: 234 LERVAFLKQGVENMYEIDQVRPVLDRAAELAGKPY-GNEAHEDDVRLRVVADHVRSALML 292 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 + DG+ P+NEGRGYVLRR++RR + LLG L P M +AYPE+ Sbjct: 293 MTDGVTPSNEGRGYVLRRLLRRTVRAMWLLGVEAATFPALFPVSRDAMKAAYPEVETEFA 352 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQ 402 + +E+E F +TL G +LD +++ GK E L GD AF L+DT+G P+D+ Sbjct: 353 RTSQLAYAEEETFLRTLVAGTSILDTAVANTQKAGKRE-LAGDTAFLLHDTYGFPIDLTL 411 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 ++ GL+ +D +F+ + +QR+RA+A + + + +S G T F GY Sbjct: 412 EMAEEAGLS-VDRAAFDTLMADQRARAKADAKAKKTALADLSVYSGLRALGETVFTGYTE 470 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L S V ++ G +AV GQ EV+ T YA Sbjct: 471 LE-----------------------TESSVLGLIIDGHSANKAVEGQVAEVILGATALYA 507 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 EAGGQ DTG +G G L + DVQK G+ H +V G + + +D RR Sbjct: 508 EAGGQDADTGTIVGPGYVLDVLDVQKPVRGLVSHRVLVRSGEVGVGVPATSLVDADYRRG 567 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 HS TH++H AL +LGS+ Q+GS LR D + ++ ++ IE+ N Sbjct: 568 AKQAHSGTHIIHAALRQVLGSNAHQSGSYNKAGYLRLDFSWNQALSPETRSEIEEISNSA 627 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 I QNL V TR + +A A GA AL G KY D VRVV + GG S LC GTHV+ + Sbjct: 628 IRQNLEVTTRELPLAEAKALGAMALFGEKYGDTVRVVDI----GGPWSRELCAGTHVARS 683 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ 753 EI L+ +VSESS+ + RR+E++ G A L + + L+S LK + Sbjct: 684 AEIGLINLVSESSVGSTNRRVESLVGLEAFKDLAVERTIVSQLSSSLKTPR 734 >gi|1673365|emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis thaliana] Length = 1003 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P + +A Sbjct: 64 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 123 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 124 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 182 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC Sbjct: 183 PTDRIYATYFGRDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 240 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EI +D+ G L + + +EIWNLVF+QF +++ LP +DTGMG E Sbjct: 241 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 298 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282 R+ +VLQ K +NYD D+F + ++ TG + + + +RV+ DH+R+ Sbjct: 299 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 358 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341 SF IADG P NEGR YVLRRI+RRA+ Y + +L E L+ ++ MG + EL Sbjct: 359 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 418 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + + I + ++ E+ F KTL +G+ + + L+GD AF L+DT+G PLD+ Sbjct: 419 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 477 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + RGL +D+ FN+A+EE R R+R S + K Sbjct: 478 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 513 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512 G+ M D K + T+ S +KAI +E + + V Sbjct: 514 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 570 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569 +V T FYAE GGQ+ DTG G + +VQ G FV H E G + Sbjct: 571 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 628 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ +DY+ R+ ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ Sbjct: 629 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 688 Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681 +L+ IE VN I L V ++ +++ I G A+ G Y D VRVVS+ Sbjct: 689 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEAYPDPVRVVSIGRKVED 747 Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E + + SS CGGTH+++T E ++SE I GIRR+ A+T + A Sbjct: 748 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 802 >gi|213404528|ref|XP_002173036.1| alanyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275] gi|212001083|gb|EEB06743.1| alanyl-tRNA synthetase [Schizosaccharomyces japonicus yFS275] Length = 961 Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust. Identities = 333/975 (34%), Positives = 504/975 (51%), Gaps = 110/975 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 + +R+TF+++F+++GH +PSSS+IP DPTL+F N+GM +K IF G P Sbjct: 11 ANKVRSTFIDYFKEHGHTFVPSSSVIPFEDPTLLFANAGMNQYKPIFLGTVDPSSSFAKL 70 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDL++VG+ N HHT FEMLGN+SFG YFK+ AI LAW LLT+ F Sbjct: 71 KRACNSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIPLAWKLLTEVF 130 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L+ +LY+T + D EA +W ++ G+ +++I DNFW M E GPCG Sbjct: 131 KLNPDQLYVTYFGGHEESGLGPDLEAKNIWLEM-GIPPERVIPGNLKDNFWEMGEQGPCG 189 Query: 171 PCSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 PCSEI +D+ G +P + +++ +EIWN+VFM+F ++ LP IDTGM Sbjct: 190 PCSEIHYDRIGGRSVPELV---NQDDPNVLEIWNIVFMEFNREKDGSLRPLPNKHIDTGM 246 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHL 279 G ER+ +V+Q K++NYD DLF L Q +++TG + YEG +++ +RV+ DH+ Sbjct: 247 GFERLVSVVQNKSSNYDTDLFAPLFQKIQELTGARPYEGRMGEDDVDGIDTAYRVVADHV 306 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMGSA 336 R+ +F I+DG +P NEGRGYVLRRI+RR Y R + P+ L + +MG Sbjct: 307 RTLTFAISDGGVPNNEGRGYVLRRILRRGARYVR-KKFNTPIGDFFSRLALVVAEQMGEF 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394 +PE+ ++E L E+E F +TLDRG + + + K E +L G ++LY+T+ Sbjct: 366 FPEVRSKLEDVKEILDEEEESFSRTLDRGEKMFEQYAAAAQKTESKMLKGMDVWRLYETY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFN--QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 G P+D+ + GL ID+ FN QA ++ SR RA G S T + Sbjct: 426 GFPVDLTHLMAEEAGLK-IDVEGFNAAQAHSKEISR-RAAKAGGDSATMVTLDI---HAL 480 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQ 509 GA L + + K D + I+ T VKA+ E+ +G+ Sbjct: 481 GA-------LAKMPEVPKTDDHFKHESGTINAT------VKALYHPSGFQTSTEKFEAGE 527 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTE 568 + ++ D+T FYAE GGQ DTG DG + ++T+VQ G +H E G L Sbjct: 528 NIGILLDRTNFYAEQGGQEYDTGRITIDGKLEFRVTNVQVYG-GYVLHTGFCEYGSLNVG 586 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 ++ D RR L NH+ TH+L+ AL +LG V Q GS ++P+ LRFD +H ++ Sbjct: 587 DEVICEYDELRRRPLMNNHTVTHILNFALREVLGEGVDQRGSLVSPEKLRFDFSHKAALS 646 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSV-- 681 EL+ +E+ N IA+NL R+ +E +A +G A+ G Y D VRVV V Sbjct: 647 IKELERVENICNQKIAENL----RVYAKELPLAISKEIAGLRAVFGEVYPDPVRVVCVGA 702 Query: 682 ---------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 + E +S CGGTH+ TGEI I+ ES I GIRRI A+T A Sbjct: 703 DIDEIIKDPKNEQWRQYSIEFCGGTHLPKTGEIKDFVILEESGIAKGIRRIVAVTAADAN 762 Query: 733 S--HLMGQ-DEKLKSLASF--------------LKVSQGNVVG-RVEEIWEEYRKL---- 770 + + D++L LA+ + +SQ +V R + E++ K+ Sbjct: 763 QVCRIANEFDQRLDRLAAMPHGPEKEAEIKLVTVDLSQLSVSALRKHAMKEKFTKITKQF 822 Query: 771 --QLIHAKRKLQLN----VEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI 824 Q+ A K Q + V D F+S + + K L + +K + Sbjct: 823 QDQVKAANAKEQKDAVKAVADYFEEHPESKFFVSKLNVSPNPKVLNFAISYAKKNLAGKS 882 Query: 825 IMLVGI--SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNG 882 + L+ ++ K + +V+++ L + A + ++ + V+ GG GG+ Q G N Sbjct: 883 LYLLASNGAQPDKVAHACLVSQEALPKVTAQEWSQKVSHVV-GGRCGGKKDSCQGVGTNA 941 Query: 883 NKADQAIAGVASFLK 897 +K DQAI F + Sbjct: 942 DKIDQAIEEAIEFFQ 956 >gi|229817702|ref|ZP_04447984.1| hypothetical protein BIFANG_02974 [Bifidobacterium angulatum DSM 20098] gi|229785491|gb|EEP21605.1| hypothetical protein BIFANG_02974 [Bifidobacterium angulatum DSM 20098] Length = 892 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 331/920 (35%), Positives = 495/920 (53%), Gaps = 74/920 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S I +L++F + H ++PS+SLI N PT +FT +GMVPF G++ + + + Sbjct: 3 TSEIAKRYLDYFAAHDHLVVPSASLISPN-PTTLFTIAGMVPFIPYLMGEQTAPHPRMAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 QKCVR D+D VG+T RH TFF+MLGNFSFG YFKE AI A++LLT D Sbjct: 62 NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKEEAIHYAYELLTTPQDKGGY 117 Query: 120 -LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 D +L++T + +DEEA LWK G+ + I + DNFW+ GP GPCSEI+ D Sbjct: 118 GFDPEKLWMTTFTDDEEARSLWKN-EGVDPEHIQIMGMEDNFWTTGGPGPGGPCSEIYVD 176 Query: 179 QGE--CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFIL------PKMSIDTGMGL 230 +G + GG P + E RYIEIW+LVF +E N + + L +IDTG GL Sbjct: 177 RGPEFGVEGG-PIADEN--RYIEIWDLVFENYEVDNVKSKTDLHIVGELENKNIDTGAGL 233 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLRSSSFLIAD 288 ER+A ++Q K N Y+ D +I+A+E+++G KY N V RV+ DH+RS+ +++D Sbjct: 234 ERLAYLMQGKNNIYETDEVYPVIEAAERLSGHKYGENEAFDVKFRVVADHVRSALMIMSD 293 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P+N GRGYVLRR++RR + R LG E +M L P M ++YPEL + + Sbjct: 294 GVRPSNTGRGYVLRRLLRRTVKAMRALGVQEAVMPTLFPTSKAAMEASYPELNKTFHDVS 353 Query: 349 ETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 E E++ F +TL+ G + D +S GK + D AFKL+DT+G P+++ ++ Sbjct: 354 EAAYGEEDAFLRTLEAGTEIFDMAVSKAKESGKGTVSGSD-AFKLHDTYGFPIELTLEMA 412 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG-ATQFIGYDLLR 464 +G+ +D F + + EQ+SRARA +L ++ K+ F+GY Sbjct: 413 EEQGVK-VDEAKFRELMAEQKSRARADALKKRHNVDLSVYDDFKKTLAKPIDFLGY---- 467 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-QKVEVVFDQTPFYAE 523 D + + V I+Q+G+ AV+G +EV+ D+TPFYAE Sbjct: 468 -----------------TDFS--ARATVLGIMQEGKGSVPAVTGPANIEVILDRTPFYAE 508 Query: 524 AGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 AGGQL D G + D G L++ DVQK + + VH + G L + ID R Sbjct: 509 AGGQLADQGEILSDDGAVLEVDDVQKPIKDLIVHQCRLTEGTLVVGTQVNANIDLNRRGA 568 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ +H+ATH++H AL LG +Q GS P+ LRFD S + + ++E VN+ Sbjct: 569 IARSHTATHMVHKALREELGPQATQRGSEDAPNRLRFDFQWSSAPSKDVMNTVEARVNEK 628 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + +NL V T+ M +DAIA GA L G KY D VRVVS+ EDG S LCGGTH+ Sbjct: 629 LRENLAVTTQEMKFDDAIALGAMHLFGEKYGDIVRVVSIG-EDG--WSRELCGGTHIDHV 685 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE- 761 G+I + I+SE+S+ +G+RR++A+ G A + + + L+ L + RV Sbjct: 686 GKIGAINIMSEASVGSGVRRVDAVVGAGAYEYNAREHALVSQLSDKLNARPDELAERVNA 745 Query: 762 ---EIWEEYRKLQLIH----AKRKLQLNVEDLSCHKIADVNFMSHI--ISEVDSKELKSV 812 ++ E R+L ++ A QL V+D + + ++ D+ K+V Sbjct: 746 LLAKLKESDRRLAAMYEGQLAATVPQL-VQDANASAASVKVAAKNVGHFGSFDALR-KTV 803 Query: 813 MDALQKKIQSG--IIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGG 869 MD + + ++ L G+S E K V + D A DL R ++K+L GGGGG Sbjct: 804 MDVRARLGEDAPVVVALAGVSAEDKPMVAVATNAAARDLGIKAGDLVRGASKML-GGGGG 862 Query: 870 GRPHMAQSGGPNGNKADQAI 889 G+P AQ GG + +K D+A+ Sbjct: 863 GKPDFAQGGGADASKIDEAL 882 >gi|255948530|ref|XP_002565032.1| Pc22g10240 [Penicillium chrysogenum Wisconsin 54-1255] gi|211592049|emb|CAP98312.1| Pc22g10240 [Penicillium chrysogenum Wisconsin 54-1255] Length = 958 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 288/770 (37%), Positives = 417/770 (54%), Gaps = 70/770 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQAV 61 +R TFL++F++NGH +PSS + P +DPTL+FTN+GM FK+IF G + + Sbjct: 13 VRDTFLDYFKQNGHTFVPSSPVAPLSDPTLLFTNAGMNQFKSIFLGTVDASSDFGKMKRA 72 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ + LD Sbjct: 73 TNSQKCLRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVYGLD 132 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ +E EA +LWK + G+ I+ DNFW M + GPCGPCS Sbjct: 133 PDRLYVTYFEGNEAGGLEPDLEAKELWKSV-GVPESHILPGDMKDNFWEMGDQGPCGPCS 191 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 E+ +D+ GG + +E+ +EIWN VF+Q+ ++ LP +DTGMG Sbjct: 192 EVHYDR----IGGRNAAHLVNEDDPNVLEIWNNVFIQYNREPDSSLRSLPNKHVDTGMGF 247 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281 ER+ ++LQ K +NYD D+F + QA + TG + Y G + +RV+ DH+R+ Sbjct: 248 ERLVSILQNKPSNYDTDVFTPIFQAIQNTTGAREYRGQFGADDADGIDTAYRVVADHVRT 307 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 F I+DG++P NEGRGYV+RR++RR YAR + L+P + ++G +PE Sbjct: 308 LMFAISDGVIPNNEGRGYVIRRVLRRGARYARKYFQVDIGNFFAKLVPTVVDQLGEMFPE 367 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 L + + + E L E+ F KTLDRG + + + ++L+G ++LYDT G P Sbjct: 368 LKRKQQDVVEILDEEELSFAKTLDRGERQFEQYAQQAKVKGTDMLHGADVWRLYDTFGFP 427 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + + RGL ID + F EE R +A+ S G +K A Sbjct: 428 VDLTRIMAEERGLR-IDDVEF----EEARLKAKEASKG--------------QKKAAENT 468 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVV 514 + D+ K K + P +++ VKAI ++ G ++ ++ Sbjct: 469 VKLDVHDLGKLEKMNDVQKTDDSPKFGRGNITAHVKAIYHGKTFHKSTDDVPEGAQLGII 528 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D T FYAE GGQ DTG I DG L++ DVQ A G +H ++ G S++ Sbjct: 529 LDCTNFYAEQGGQENDTGKIIIDGQAELEVGDVQSYA-GYVLHTGFMKYGSFTVGNSVIC 587 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H I+ AEL+ Sbjct: 588 EYDELRRWPIRNNHTGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKTAISDAELE 647 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH--- 689 +IE + I QN V ++ + A SG A+ G Y D VRVVSV E + Sbjct: 648 NIEAKSTEYIRQNCAVYSQELPLATAQQISGVRAVFGETYPDPVRVVSVGVELEEILKNV 707 Query: 690 --------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 S CGGTHV TG+I L I+ ES I G+RRI A+TG+ A Sbjct: 708 KDPRWQEVSIEFCGGTHVQKTGDIKDLIILEESGIAKGVRRIIAVTGEDA 757 >gi|149640708|ref|XP_001506178.1| PREDICTED: similar to Alanyl-tRNA synthetase isoform 1 [Ornithorhynchus anatinus] Length = 968 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 302/798 (37%), Positives = 435/798 (54%), Gaps = 66/798 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 SASEIRQRFIDFFKRNRHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + D D E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGNEAAGLDPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + +++ +EIWNLVF+QF ++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + Y G + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYMGQVGADDTDGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + +ADG P N GRGYVLRRI+RRA+ Y+ L ++ L+ + +G A Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASKGFFATLVDVVVQSLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G Sbjct: 361 FPELKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDGKTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ I +GL +D+ F EE+R A+ S G G+G + I + Y + Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 DL K + + + + V++ VKA+ ++ V+E +GQ+ VV D Sbjct: 473 LRARDLEVTDDSPKYNYRANASG-SYEFESPVAT-VKALRREKTFVDEVSTGQECGVVLD 530 Query: 517 QTPFYAEAGGQLGDTGCAIGDG------IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 +T FYAE GGQ+ D G + D + +VQ + G +V H G L+ Sbjct: 531 KTCFYAEQGGQIFDEGYLVKDDDGSEDKTEFTVKNVQVR--GGYVLHIGTVYGNLKVGDQ 588 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ Sbjct: 589 VRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQ 647 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------Y 683 E+K E+ N +I PV + A A G A+ Y D VRVVS+ Sbjct: 648 EIKKTEEIANGMIQAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVAELL 707 Query: 684 ED-----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 ED G + S CGGTH+ ++G IVSE +I GIRRI A+TG A+ L Sbjct: 708 EDPSSPAGSLTSVEFCGGTHLRNSGHAGAFVIVSEEAIAKGIRRIVAVTGTEAQKAL--- 764 Query: 739 DEKLKSLASFLKVSQGNV 756 K +SL + L V + V Sbjct: 765 -RKAESLKTALSVLEAKV 781 >gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala synthetase [Arabidopsis thaliana] gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis thaliana] gi|31711780|gb|AAP68246.1| At1g50200 [Arabidopsis thaliana] Length = 955 Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust. Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P + +A Sbjct: 16 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 76 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 134 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC Sbjct: 135 PTDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 192 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EI +D+ G L + + +EIWNLVF+QF +++ LP +DTGMG E Sbjct: 193 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 250 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282 R+ +VLQ K +NYD D+F + ++ TG + + + +RV+ DH+R+ Sbjct: 251 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 310 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341 SF IADG P NEGR YVLRRI+RRA+ Y + +L E L+ ++ MG + EL Sbjct: 311 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 370 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + + I + ++ E+ F KTL +G+ + + L+GD AF L+DT+G PLD+ Sbjct: 371 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 429 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + RGL +D+ FN+A+EE R R+R S + K Sbjct: 430 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 465 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512 G+ M D K + T+ S +KAI +E + + V Sbjct: 466 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 522 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569 +V T FYAE GGQ+ DTG G + +VQ G FV H E G + Sbjct: 523 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 580 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ +DY+ R+ ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ Sbjct: 581 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 640 Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681 +L+ IE VN I L V ++ +++ I G A+ G Y D VRVVS+ Sbjct: 641 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEVYPDPVRVVSIGRKVED 699 Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E + + SS CGGTH+++T E ++SE I GIRR+ A+T + A Sbjct: 700 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 754 >gi|332194404|gb|AEE32525.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] Length = 963 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P + +A Sbjct: 16 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 75 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 76 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 134 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC Sbjct: 135 PTDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 192 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EI +D+ G L + + +EIWNLVF+QF +++ LP +DTGMG E Sbjct: 193 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 250 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282 R+ +VLQ K +NYD D+F + ++ TG + + + +RV+ DH+R+ Sbjct: 251 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 310 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341 SF IADG P NEGR YVLRRI+RRA+ Y + +L E L+ ++ MG + EL Sbjct: 311 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 370 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + + I + ++ E+ F KTL +G+ + + L+GD AF L+DT+G PLD+ Sbjct: 371 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 429 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + RGL +D+ FN+A+EE R R+R S + K Sbjct: 430 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 465 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512 G+ M D K + T+ S +KAI +E + + V Sbjct: 466 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 522 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569 +V T FYAE GGQ+ DTG G + +VQ G FV H E G + Sbjct: 523 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 580 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ +DY+ R+ ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ Sbjct: 581 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 640 Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681 +L+ IE VN I L V ++ +++ I G A+ G Y D VRVVS+ Sbjct: 641 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEVYPDPVRVVSIGRKVED 699 Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E + + SS CGGTH+++T E ++SE I GIRR+ A+T + A Sbjct: 700 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 754 >gi|320040301|gb|EFW22234.1| alanyl-tRNA synthetase [Coccidioides posadasii str. Silveira] Length = 964 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/772 (37%), Positives = 426/772 (55%), Gaps = 75/772 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL+FF+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 20 VRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 79 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L+ Sbjct: 80 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGLE 139 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + + D E LW + G+ D I+ DNFW M + GPCGPCS Sbjct: 140 PDRLYVTYFEGNKDAGIEPDLETKDLWLSV-GVKEDHILSGNMKDNFWEMGDQGPCGPCS 198 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 E+ +D+ GG + + + +EIWN VF+Q+ ++++ LP +DTGMG Sbjct: 199 EVHYDR----IGGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGY 254 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ +VLQ+K +NYD D+F L A ++TG++ Y G + I +RV+ DH+R+ Sbjct: 255 ERLVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDLDGIDTAYRVVADHVRT 314 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 315 LTFAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPE 374 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGL 396 + + + + E L E+ F KTLDRG + + + KD L+G ++LYDT G Sbjct: 375 IKKKQTDVMEILDEEEISFAKTLDRGERQFE-IYAQQAKDSGSNKLHGADVWRLYDTFGF 433 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + RGL+ ID + F EE R +A+ S G ++ + S+ Sbjct: 434 PVDLTQLMAEERGLS-IDNVEF----EEARLKAKEASKGQAKAASDLLKLSV-------- 480 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV---SGQKVEV 513 +DL SK K+ N +S IV A+ E V+ G ++ + Sbjct: 481 ---HDL---SKLEKDKVPKTNDDAKFGRGNILSQIV-AVYHDKEFVDSTSGIPEGDQIGI 533 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG I DG L + +VQ +F H ++ G L S++ Sbjct: 534 ILDKTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVF-HTGFIKYGNLSVGDSVI 592 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+ AL +LG+ + Q GS + + LRFD +H ++ ++L Sbjct: 593 SEYDELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDL 652 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED---- 685 + IE+ + I QN V ++ + A +G A+ G Y D VRVVS VE E+ Sbjct: 653 EKIEEKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKD 712 Query: 686 ------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 GV S CGGTHV TG+I L I+ E I GIRRI A+TG+ A Sbjct: 713 VKDPRWKGV-SIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDA 763 >gi|30694735|ref|NP_175439.2| ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] gi|21542451|sp|P36428|SYA_ARATH RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|332194403|gb|AEE32524.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] Length = 1003 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 284/775 (36%), Positives = 416/775 (53%), Gaps = 86/775 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P + +A Sbjct: 64 VRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRA 123 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 124 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 182 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y T + DE EA +W K+ L + +++ DNFW M +TGPCGPC Sbjct: 183 PTDRIYATYFGGDEKAGLQPDNEARDIWLKV--LPSGRVLPFGCKDNFWEMGDTGPCGPC 240 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EI +D+ G L + + +EIWNLVF+QF +++ LP +DTGMG E Sbjct: 241 TEIHYDRIGNRDAASLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 298 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282 R+ +VLQ K +NYD D+F + ++ TG + + + +RV+ DH+R+ Sbjct: 299 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTL 358 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341 SF IADG P NEGR YVLRRI+RRA+ Y + +L E L+ ++ MG + EL Sbjct: 359 SFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELK 418 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + + I + ++ E+ F KTL +G+ + + L+GD AF L+DT+G PLD+ Sbjct: 419 EHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAV-QGNTLSGDDAFILWDTYGFPLDLT 477 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + RGL +D+ FN+A+EE R R+R S + K Sbjct: 478 QLMAEERGLL-VDVDGFNKAMEEARERSR----------------SAQNKQAG------- 513 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512 G+ M D K + T+ S +KAI +E + + V Sbjct: 514 ---GAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVG 570 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHA---IVERGILRTEM 569 +V T FYAE GGQ+ DTG G + +VQ G FV H E G + Sbjct: 571 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQ--IFGGFVLHIGYLSKETGEVSVGD 628 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ +DY+ R+ ++ NH+ TH+L++AL +LG H+ Q GS + P+ LRFD +H KP+ Sbjct: 629 KVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDP 688 Query: 630 AELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------ 681 +L+ IE VN I L V ++ +++ I G A+ G Y D VRVVS+ Sbjct: 689 EDLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEVYPDPVRVVSIGRKVED 747 Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E + + SS CGGTH+++T E ++SE I GIRR+ A+T + A Sbjct: 748 LLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 802 >gi|119195813|ref|XP_001248510.1| alanyl-tRNA synthetase, cytoplasmic [Coccidioides immitis RS] Length = 1023 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 294/772 (38%), Positives = 426/772 (55%), Gaps = 75/772 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL+FF+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 79 VRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 138 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L+ Sbjct: 139 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGLE 198 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + + D E LW + G+ D I+ DNFW M + GPCGPCS Sbjct: 199 PDRLYVTYFEGNKDAGIEPDLETKDLWLSV-GVKEDHILSGNMKDNFWEMGDQGPCGPCS 257 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 E+ +D+ GG + + + +EIWN VF+Q+ ++++ LP +DTGMG Sbjct: 258 EVHYDR----IGGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGY 313 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ +VLQ+K +NYD D+F L A ++TG++ Y G + I +RV+ DH+R+ Sbjct: 314 ERLVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDVDGIDTAYRVVADHVRT 373 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 374 LTFAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPE 433 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGL 396 + + + + E L E+ F KTLDRG + + + KD L+G ++LYDT G Sbjct: 434 IKKKQTDVMEILDEEEISFAKTLDRGERQFE-IYAQQAKDSGSNKLHGADVWRLYDTFGF 492 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + RGL+ ID + F EE R +A+ S G ++ + S+ Sbjct: 493 PVDLTQLMAEERGLS-IDNVEF----EEARLKAKEASKGQAKAASDLLKLSV-------- 539 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV---SGQKVEV 513 +DL SK K+ N +S IV AI E V+ G ++ + Sbjct: 540 ---HDL---SKLEKDKVPKTNDDAKFGRGNILSQIV-AIYHDKEFVDSTSGIPEGDQIGI 592 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG I DG L + +VQ +F H ++ G L S++ Sbjct: 593 ILDKTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVF-HTGFIKYGDLSVGDSVI 651 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+ AL +LG+ + Q GS + + LRFD +H ++ ++L Sbjct: 652 SEYDELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDL 711 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED---- 685 + IE+ + I QN V ++ + A +G A+ G Y D VRVVS VE E+ Sbjct: 712 EKIEEKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKD 771 Query: 686 ------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 GV S CGGTHV TG+I L I+ E I GIRRI A+TG+ A Sbjct: 772 VKDPRWKGV-SIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDA 822 >gi|327281303|ref|XP_003225388.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Anolis carolinensis] Length = 969 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 314/869 (36%), Positives = 453/869 (52%), Gaps = 102/869 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F+ FF +N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFINFFVENQHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A + A DLLTKE Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKFALDLLTKE 125 Query: 118 FDLDQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + +E A ++W + GL D+I+ + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGNEAAGLQPDLDCKQIWLDL-GLPEDRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSE+ +D+ GG S +++ +EIWNLVF+QF ++ LPK SIDT Sbjct: 185 GPCSEMHYDR----IGGRDASHLVNQDDPNVLEIWNLVFIQFNREADGTLKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGCRPYTGQVGEDDADGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + ++DG P N GRGYVLRRI+RRA+ YA L L+ + +G A Sbjct: 301 HARTITVALSDGGRPDNTGRGYVLRRILRRAVRYAHEKLNAPRGFFATLVDVVVESLGGA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL+RG +LD + LG ++++ GD A+ LYDT+G Sbjct: 361 FPELKKDPEMVKDIINEEEVQFLKTLNRGRRILDRKIQSLGDNKVIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ I +GL +D+ F EE+R A+ S G G G + I + Y + Sbjct: 421 PVDLTGLIAEEKGLK-VDMEGF----EEERKAAQLKSQGKGGGDEDLIILDI---YAIEE 472 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI--VKAIVQQGEIVEEAVSGQKVEVV 514 +G K + K P S + VKA+ ++ VEE +GQ+ +V Sbjct: 473 LRS----KGLKATDDSLKYNYASDPSGTYEFQSPVATVKALRREKVFVEEVSTGQECGIV 528 Query: 515 FDQTPFYAEAGGQLGDTGCAIG-------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 DQT FYAE GGQ+ D G + D + +VQ + G +V H G L+ Sbjct: 529 LDQTCFYAEQGGQIYDEGYLVKEEDEGSEDKTEFTVKNVQVR--GGYVLHVGTVYGSLKV 586 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 ++ L ID RR + NH+ATH+L+ AL +LG Q GS + PD LRFD T + Sbjct: 587 GDTVRLYIDEPRRRPVMSNHTATHILNFALRAVLG-EADQRGSLVAPDRLRFDFTAKGAM 645 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-----ALLGTKYNDRVRVVS-- 680 ++ E+K E VN +I + + +E A+A+ A A+ Y D VRVVS Sbjct: 646 STQEIKKAEAIVNQMIQE----AKVVYAKECALAAAKAIQGLRAVFDETYPDPVRVVSIG 701 Query: 681 VEYED---------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + ED G + S CGGTH+ ++ IVSE +I GIRRI A+TG A Sbjct: 702 IPIEDMLADPSNAAGAITSVEFCGGTHLQNSSHAGHFVIVSEEAIAKGIRRIVAVTGAEA 761 Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791 + L K++SL L + AK K+Q H+I Sbjct: 762 QKAL----RKVESLKKLLAD---------------------LEAKVKVQTAPNKDVQHEI 796 Query: 792 ADV--NFMSHIISEVDSKELKSVMDALQK 818 AD+ + + +I + EL+ + AL+K Sbjct: 797 ADLGESLATAVIPQWQKDELRESLKALKK 825 >gi|255713044|ref|XP_002552804.1| KLTH0D01848p [Lachancea thermotolerans] gi|238934184|emb|CAR22366.1| KLTH0D01848p [Lachancea thermotolerans] Length = 955 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 288/771 (37%), Positives = 415/771 (53%), Gaps = 68/771 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 S++R+TF+EFF++ H + SS +IP +DPTL+F N+GM +K IF G P Sbjct: 11 ASNVRSTFMEFFKQREHTFVASSPVIPYDDPTLLFANAGMNQYKPIFLGTVDPSSDYYSL 70 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + Sbjct: 71 KRAMNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKDAIQYSWELLTKVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + RLY+T ++ D+ EAF+LWK + G+S D I+ DNFW M + GPCG Sbjct: 131 GIPSERLYVTYFEGDQKQGLEPDLEAFELWKSV-GVSEDHILPGNAKDNFWEMGDQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG +S + +E+WN+VF+Q+ ++ LP IDTG Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPNVLEVWNIVFIQYNREQNGTLKSLPSKHIDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278 MG ER+ +VLQ+ +NYD D+F+ L +++TG + YEG + I +RV+ DH Sbjct: 246 MGFERLVSVLQDVKSNYDTDVFQPLFARIQEITGARPYEGKFGAEDADGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L P L + + Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSSLAPTLIDQSKAM 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLG--KDEILNGDVAFKLYDTH 394 +PE+ + + E L E+ F KTLDRG L + KD+ L+G ++LYDT+ Sbjct: 366 FPEINRDPSYLFEILDEEEASFAKTLDRGEKLFEKYAQAAAQTKDKTLDGLQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID F +A +E ++ K A Sbjct: 426 GFPVDLTELMAEEKGLK-IDGPGFEKAKQESYEASKKGG-----------------KKSA 467 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVEV 513 + I ++ S E+ P + N + +IV I V+E + G++ V Sbjct: 468 SDLIKLEVHELSTLNSENVPKTDDSPKYESAN-IEAIVLRIFDGENFVDEISEVGKQYGV 526 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D T FYAE GGQ D G + D + + +VQ G H + G L ++ Sbjct: 527 ILDSTCFYAEQGGQEYDMGTLVIDDVAEFSVENVQ-LYNGYVFHTGQLGEGKLSVGDKVI 585 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 + D R + NH+ TH+L+ AL +LG+ V Q GS + P+ LRFD +H K + EL Sbjct: 586 ASFDELRRFPIKNNHTGTHILNFALKEVLGNDVDQKGSLVAPEKLRFDFSHKKAVALDEL 645 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---------- 681 K +E N+ I NLPV + + + A S A+ G Y D VRVVSV Sbjct: 646 KEVERICNEQIKANLPVYYKNVPLDLARKISSVRAVFGETYPDPVRVVSVGKPVDDMLVD 705 Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ +S CGGTHVS TG+I I+ ES I G RRI A++G A Sbjct: 706 PTSEEWQKYSVEFCGGTHVSKTGDIKEFVIIEESGIAKGTRRIVAVSGSEA 756 >gi|50310341|ref|XP_455190.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644326|emb|CAG97897.1| KLLA0F02431p [Kluyveromyces lactis] Length = 956 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 320/968 (33%), Positives = 495/968 (51%), Gaps = 99/968 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 +++R+TFL++F+ GH +PSS +IP +DPTL+F N+GM +K IF G P Sbjct: 11 AANVRSTFLDYFKSKGHTFVPSSPVIPFDDPTLLFANAGMNQYKPIFLGTVDPSSDFYKL 70 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + T QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + Sbjct: 71 KRATNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + RLY+T ++ DE EA LWK + G+ D I+ DNFW M E GPCG Sbjct: 131 GIPGDRLYVTYFEGDEKLGLEPDFEARDLWKSV-GVKDDHILPGNAKDNFWEMGEQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSE+ +D+ GG + +++ +EIWN VF+QF ++ + LP +DTG Sbjct: 190 PCSEVHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQFNREQDRSLRALPAKHVDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278 MG ER+ +VL + +NYD D+F+ L +++TG++ Y G + I +RV+ DH Sbjct: 246 MGFERLVSVLHDVRSNYDTDVFEPLFNRIQEITGVRSYTGKFGAEDTDGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L L ++ Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSQLSVTLIEQVKDM 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTH 394 +PE+ + + E L E+ F KTLDRG L + K D+ L+G ++LYDT+ Sbjct: 366 FPEVARDPSYLFEILDEEEASFAKTLDRGEKLFEKYAEDALKKADKTLDGKQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID I F +A +E ++ G G ++ I ++ E Sbjct: 426 GFPVDLTELMAEEQGLK-IDTIGFEKAKQESYEASKK---GGKKGASDLIRLNVHE---- 477 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEV 513 L G K D T V + + I + V+ G++ V Sbjct: 478 -----LSQLNGDNVAKTDDSSKYG------TENVEATILRIYDGEKFVDSMTEIGKQYGV 526 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG + DG + +VQ G H + G L S++ Sbjct: 527 ILDKTCFYAEQGGQEFDTGKLVIDGEAEFNVDNVQ-AYNGYVFHTGSLGDGKLSIGDSII 585 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 + + R L NH+ TH+L+ AL +LG+ V Q GS + P+ LRFD +H + ++ EL Sbjct: 586 ASYEELRRHPLRNNHTGTHILNFALKEVLGNDVDQKGSLVAPEKLRFDFSHKRALSYEEL 645 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV---------- 681 +E N+ I NL V + + + A S A+ G Y D VRVVS+ Sbjct: 646 VEVEKLSNEKIRDNLTVYYKEVALDLAKTISSVRAVFGETYPDPVRVVSIGKAVEEVLEN 705 Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSH 734 E+ +S CGGTHV+ T +I IV ES I GIRRI A++G QR + Sbjct: 706 PTSEEWQKYSIEFCGGTHVAKTSDIKEFVIVEESGIAKGIRRIVAVSGPEAYEVQRIATE 765 Query: 735 LMGQ-------------DEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLIHA 775 G+ +KLK L L +++ ++ + +I +E + A Sbjct: 766 FDGELTAVEKLPFSPLKAQKLKELGVRLGQLTISVITKTDLKDKFNKIEKEVKDELKSRA 825 Query: 776 KRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 K++++ ++D+ H A+ ++ HI ++K + ++ ++ + I L ++ Sbjct: 826 KKEIKQTLDDVKHHFDANKESSFYVKHIDIPTNAKAITEAINHIKTNSKDKSIYLFTCNE 885 Query: 833 E--KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K A + + + LA+ + + GG GG+ ++ Q G N D A+A Sbjct: 886 PDGKVAHGCYISDAAIAQGVDGSSLAKTVSSSI-GGKAGGKGNVFQGMGDKPNGIDSAVA 944 Query: 891 GVASFLKK 898 V + LK+ Sbjct: 945 EVEALLKE 952 >gi|162447763|ref|YP_001620895.1| alanyl-tRNA synthetase [Acholeplasma laidlawii PG-8A] gi|205829962|sp|A9NGN9|SYA_ACHLI RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|161985870|gb|ABX81519.1| alanyl-tRNA synthetase [Acholeplasma laidlawii PG-8A] Length = 851 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 338/936 (36%), Positives = 485/936 (51%), Gaps = 138/936 (14%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR T+L FF+ GH + PS+SLIP +DPTL++ N+G+ P K F G E P + +T +QK Sbjct: 6 IRQTWLNFFKDKGHIIEPSASLIPVDDPTLLWINAGVAPLKKYFDGTETPKSKRITNIQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 +R ND+DNVG+T RHHTFFEM+GNFS G YFK+ AI+ ++LLT K FD+ + Sbjct: 66 SIRT----NDIDNVGKTARHHTFFEMMGNFSIGDYFKKEAIEFGFELLTSPKYFDIPLDK 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY+T Y D EA W K+ G+ D +I + NFW + GP GP +EIFFD+G Sbjct: 122 LYMTYYPTDVEAKNTWLKL-GVKEDHLIPV--EGNFWEIG-AGPSGPDTEIFFDRGTSYD 177 Query: 185 GGLPG---SSEEGERYIEIWNLVFMQFEQQNKQERFI---LPKMSIDTGMGLERMATVLQ 238 P E ER+IEIWN+VF Q+ K +R LP +IDTG GLER A VLQ Sbjct: 178 LRGPELIRDDIENERFIEIWNIVFSQYNADPKLKRSEYKELPNKNIDTGAGLERFACVLQ 237 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DL +I E ++G+KY+G + +VI DH+++ F I+DG +NEGRG Sbjct: 238 GTKTNFETDLHYPVILKVESLSGVKYDGQ--MAFKVISDHIKTLVFAISDGANLSNEGRG 295 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVLRRI+RRA+ Y + +G+ P + L+ + M + Y LI+ +++++ + E+E+F Sbjct: 296 YVLRRILRRAVKYGKSIGFDAPFLHLLVDTVVDMMSNFYTNLIETAVIVKKIILKEEEKF 355 Query: 359 GKT-LDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 T LD LL + KD L+G+ AFKLYDT+G P+++ + G+ +DI Sbjct: 356 FSTILDGEKHLLQSI-----KDGKLSGEDAFKLYDTYGFPIELTIEYAEEHGIT-VDIKG 409 Query: 418 FNQALEEQRSRAR-----AHSLGLGSGTTEKIW-FSLKEKYGATQFIGYDLLRGSKFMKE 471 FN+ALE Q+SR+R HS+ G E + F + ++F+GYD L+ Sbjct: 410 FNEALEVQKSRSRDARKVTHSM---KGQDEALLNFDV-----PSEFVGYDYLQ------- 454 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S V + QG +V D+TPFYA +GGQ+ DT Sbjct: 455 ----------------TESKVIKVFDQG-------------IVLDKTPFYANSGGQISDT 485 Query: 532 GCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSAT 590 G G L + DV K G +H ++E TE VL I Q++R ++ NH+AT Sbjct: 486 GSING----LVVRDVIKLPHGQHLH--LIETDAF-TEGDEVLCIVNQDKRHHTMKNHTAT 538 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL+ AL LGSHV Q GS L FD+ H + I E+ ++E V I + + VV Sbjct: 539 HLLNQALKDTLGSHVKQQGSYNGDLKLTFDINHYETIKDEEILTVEKIVQQKIKEQIDVV 598 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 T ++ ++A GAA G KY D VRVV V G S CGGTHV +T +I I Sbjct: 599 THVLPIDEAKKLGAAMQFGEKYGDIVRVVDV-----GSWSMEFCGGTHVKNTSDIKNFMI 653 Query: 711 VSESSIRAGIRRIEAITGQ------RARSHLMG----QDEKLKSLASFLKVSQGNVVGRV 760 S SI +G R EAITGQ + +L+ EK+KSL + + + + Sbjct: 654 TSVESIGSGTYRFEAITGQVLSQVKKIVQNLLDMIHQHIEKIKSL------DENHNLKPL 707 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS-------------- 806 E+ Y+ + + + N E K + + II + D+ Sbjct: 708 PELTGSYQDIINLRLYNQYISN-ESKVVEKQLEAKLIDQIILQADTFIPKTIEPTTYIYS 766 Query: 807 -----KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK 861 LK ++D L KI++ ++L+ IS E KAS L+ + + A ++ K Sbjct: 767 DNLPQSSLKPLIDVLYDKIKADTVVLLNIS-EDKASYLVKSSVN-----EARNVINELNK 820 Query: 862 VLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 VL G GGG+P AQ G QA+ V FLK Sbjct: 821 VL-DGRGGGKPDFAQGGT-------QALDKVQMFLK 848 >gi|241956830|ref|XP_002421135.1| alanyl-tRNA synthetase, putative [Candida dubliniensis CD36] gi|223644478|emb|CAX41294.1| alanyl-tRNA synthetase, putative [Candida dubliniensis CD36] Length = 969 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 327/973 (33%), Positives = 494/973 (50%), Gaps = 111/973 (11%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQ 59 S +R+TFL++F++ H +PSSS++P NDPTL+F N+GM +K IF G P + Sbjct: 27 SKVRSTFLDYFKQQQHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFASLK 86 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLTK + Sbjct: 87 RAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDYSWELLTKVYG 146 Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L + RLY+T + DE EA W K+ G+ D I+ + DNFW M + GPCGP Sbjct: 147 LKEDRLYVTYFGGDEKQGLEPDLEAKNFWLKV-GVPEDHILPGSVKDNFWEMGDQGPCGP 205 Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ GG S + + IE+WN+VF+Q+ ++ LP IDTGM Sbjct: 206 CSEIHYDR----IGGRNASDLVNMDDPNVIEVWNVVFIQYNREADGNLRTLPNKHIDTGM 261 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN---------HRVIVDHL 279 G ER+ ++LQ K +NYD D+F + ++TG++ N +RVI DH+ Sbjct: 262 GFERLVSILQNKFSNYDTDVFLPIFDKIREITGVRPYTGKFGNEDKDGIDTAYRVIADHV 321 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPL---MMHLLPALCTEMGS 335 R+ +F I DG +P NEGRGYVLRRI+RR Y R + Y P+ L+ + + Sbjct: 322 RTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNY--PIGGFFQQLVDVVIEQNKE 379 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDT 393 +PE+ ++E L E+ F KTLDRG L + +++ ++ L+G ++LYDT Sbjct: 380 IFPEISSGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDT 439 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G P+D+ + + GL ID F +A EE R ++ GSGT K G Sbjct: 440 YGFPVDLTRLMAEEAGLK-IDEDGFERAKEESREASK------GSGT----------KDG 482 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV--QQGEIVEEAVSGQKV 511 T + D+ S+ + D K + G+ ++ +V G E++ + Sbjct: 483 KT-LVKLDVHALSELDQND---TIPKTNDEFKYGLENVKAKVVGIYDGSKFVESIEDPSI 538 Query: 512 E--VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTE 568 + ++ D+TPFYAE GGQ DTG + DG + +VQ A G +H + G L Sbjct: 539 QYGILLDKTPFYAEQGGQEYDTGKLVIDGKSEFNVANVQVYA-GYVLHTGNIVDGKLNVG 597 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 ++ T D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD ++ + +T Sbjct: 598 DEIIATYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSYKQAVT 657 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------ 681 EL+ IE N I N V + ++ A +G A+ G Y D VRVVS+ Sbjct: 658 PKELEKIEAISNKYIKNNDKVYYKDVSLTKAKEINGLRAVFGETYPDPVRVVSIGVSVDD 717 Query: 682 ---EYEDGGVH--SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736 + + H S CGGTHV+ TG+I L IV ES I GIRRI A+TG A H+ Sbjct: 718 LLADPTNAKWHEISIEFCGGTHVAKTGDIKDLVIVEESGIAKGIRRIVAVTGHDAH-HVQ 776 Query: 737 G--------------------QDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL------ 770 ++ K K L LK +V+ + + + E++ KL Sbjct: 777 KVANEFEQEIDAAASLPFGVVKESKSKELGVALKKLSISVLDK-QRLTEKFNKLDKSIKD 835 Query: 771 -----QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGII 825 Q K+ L + L+ + +SH+ ++K + ++ ++K+ +S I Sbjct: 836 NLKARQKEETKKTLDVVNNWLNDKENVSSFLVSHVPITANAKAITEAINLIKKQDKSKSI 895 Query: 826 MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 L+ +K A V E + NA +LA+ ++ + GG GG+ ++ Q G Sbjct: 896 YLLTGETDKVAHGCYVSDEAIAKGINANELAKSVSENI-GGKAGGKGNIVQGMGDKPEGI 954 Query: 886 DQAIAGVASFLKK 898 + AI V K+ Sbjct: 955 NTAIEEVTKLFKE 967 >gi|307187766|gb|EFN72738.1| Alanyl-tRNA synthetase, cytoplasmic [Camponotus floridanus] Length = 968 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 330/966 (34%), Positives = 499/966 (51%), Gaps = 110/966 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 N IR +++FF+ GHE + SSS IP +DPTL+FTN+GM FK IF G P Sbjct: 2 NAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMAK 61 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + V QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+ LT Sbjct: 62 WVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTDV 121 Query: 118 FDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 L RLY+T + DE D+E LW + G+ A ++ DNFW M ETGPC Sbjct: 122 LKLPADRLYVTYFGGDEKNGLAPDDECKDLWLSL-GIPASHVLPGNMKDNFWEMGETGPC 180 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSE+ +D+ GG + + + +EIWNLVF+Q+ +++ LP+ ID Sbjct: 181 GPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQYNRESDGSLKSLPRKHIDC 236 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNHRVIVD 277 G+GLER+ +V+Q K NYD DLF L A E+ TG Y+G + I + +RV+ D Sbjct: 237 GLGLERLVSVIQNKRANYDTDLFMPLFAAIEKATGAPSYQGKVGAEDVDGIDMAYRVLAD 296 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSA 336 H R+ + +ADG +P N GRGYVLRRI+RRA+ YA +P L+ + +G Sbjct: 297 HARTITIALADGGMPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVDLLGEV 356 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PE+ + I + + E+ +F KTL RG LL+ ++ L + + GDVA++LYDT+G Sbjct: 357 FPEVTKDPQNIIDIVNEEETQFLKTLSRGRNLLNRTIAKLESSDTVPGDVAWRLYDTYGF 416 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + +GL IDI + EE + +A+ S G ++I + + T+ Sbjct: 417 PVDLTQLMTEEKGLK-IDIAGY----EESKKQAQLISQNKAGGIDDQINLDI---HAITE 468 Query: 457 FIGYDLLRGSKFMKEDRKVLCQ--------KPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 + + K D KV+ P I IV A+ + V++ SG Sbjct: 469 MQEHGIKPTDDSPKYDYKVISSVKYEEYEFAPCI-------GIVIALRRAKTFVDQVTSG 521 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGIL 565 ++V ++ D+T FYAE GGQ+ D G + + +++ +VQ +A G +H V G L Sbjct: 522 EEVGILLDKTNFYAEQGGQIYDEGFLVKVDDEATEIRVKNVQVRA-GYVLHIGTVGEGTL 580 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 R + +D RR + NHSATH L++AL +LG+ Q GS + PD LRFD T+ Sbjct: 581 RKGDKVYTNVDTARRRLVMANHSATHALNYALRKVLGTGADQKGSLVAPDRLRFDFTNKG 640 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV--- 681 P+T+ ++K+ E+ D++ +N + + N A G A+ Y D VRV+S+ Sbjct: 641 PMTTEQVKNTENITADMVKENKKIYAKESNLALAKTIQGLRAMFEETYPDPVRVISMGIP 700 Query: 682 --EYEDGGVHSSAL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-- 731 + E + ++AL CGGTH+ TG I I SE +I GIRRI A+TG A Sbjct: 701 VDDLEKNPLSTAALETSVEFCGGTHLHYTGHIGDFIIASEEAIAKGIRRIVALTGPEAAK 760 Query: 732 --RSHLMGQDEKLKSLASFLKVSQGNV-----VGRVEEIWEE--------YRKLQLIHAK 776 R+ + Q++ L L ++ V ++ E+ EE +RK + Sbjct: 761 AFRTATLLQNQ-LSHLRETIETDNSGTNSKEYVKKIVELTEEIMHAVIPSWRKDNMRATL 819 Query: 777 RKLQLNVEDLSCHKIADV------NFMSHIISEVDSKELKSVMDALQ--KKIQSGIIMLV 828 ++L+ +++D A V S I S V + L V++A K + S + + Sbjct: 820 KELKKSLDDKERAAKAAVANTVVETIQSIIQSRVGCQVLVEVLEAYSNTKALDSALKKIR 879 Query: 829 GISKEKKASVLIVVTEDLLDRF--NAVDLARLSAKVLGG-----------GGGGGRPHMA 875 +S E A +LI + D+ F ++V + +S + G GGG+P A Sbjct: 880 VLSPETSA-LLISIDRDVKKIFALSSVPKSAVSKGLKANEWIQVIAPAMQGKGGGKPESA 938 Query: 876 QSGGPN 881 Q+ G N Sbjct: 939 QASGTN 944 >gi|303321650|ref|XP_003070819.1| Alanyl-tRNA synthetase, cytoplasmic , putative [Coccidioides posadasii C735 delta SOWgp] gi|240110516|gb|EER28674.1| Alanyl-tRNA synthetase, cytoplasmic , putative [Coccidioides posadasii C735 delta SOWgp] Length = 1023 Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust. Identities = 293/772 (37%), Positives = 426/772 (55%), Gaps = 75/772 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL+FF+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 79 VRDTFLDFFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 138 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + L+ Sbjct: 139 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEYSWELLTKVYGLE 198 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + + D E LW + G+ D I+ DNFW M + GPCGPCS Sbjct: 199 PDRLYVTYFEGNKDAGIEPDLETKDLWLSV-GVKEDHILSGNMKDNFWEMGDQGPCGPCS 257 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 E+ +D+ GG + + + +EIWN VF+Q+ ++++ LP +DTGMG Sbjct: 258 EVHYDR----IGGRNAAHLVNMDDPNVLEIWNNVFIQYNRESESILRPLPNKHVDTGMGY 313 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ +VLQ+K +NYD D+F L A ++TG++ Y G + I +RV+ DH+R+ Sbjct: 314 ERLVSVLQKKYSNYDTDVFTPLFDAIREITGVRPYSGKFGEEDLDGIDTAYRVVADHVRT 373 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 374 LTFAISDGAPPNNEGRGYVVRRVLRRGARYARKYLKVEIGNFFSKIVPTLVDQMGGMFPE 433 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTHGL 396 + + + + E L E+ F KTLDRG + + + KD L+G ++LYDT G Sbjct: 434 IKKKQTDVMEILDEEEISFAKTLDRGERQFE-IYAQQAKDSGSNKLHGADVWRLYDTFGF 492 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + RGL+ ID + F EE R +A+ S G ++ + S+ Sbjct: 493 PVDLTQLMAEERGLS-IDNVEF----EEARLKAKEASKGQAKAASDLLKLSV-------- 539 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV---SGQKVEV 513 +DL SK K+ N +S IV A+ E V+ G ++ + Sbjct: 540 ---HDL---SKLEKDKVPKTNDDAKFGRGNILSQIV-AVYHDKEFVDSTSGIPEGDQIGI 592 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG I DG L + +VQ +F H ++ G L S++ Sbjct: 593 ILDKTNFYAEQGGQEYDTGKIIIDGKAELDVRNVQMYGGYVF-HTGFIKYGNLSVGDSVI 651 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+ AL +LG+ + Q GS + + LRFD +H ++ ++L Sbjct: 652 SEYDELRRWPIRNNHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSGVSDSDL 711 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED---- 685 + IE+ + I QN V ++ + A +G A+ G Y D VRVVS VE E+ Sbjct: 712 EKIEEKCTEYIRQNCAVYSKDVPLSVAREITGVRAVFGETYPDPVRVVSVGVELEEILKD 771 Query: 686 ------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 GV S CGGTHV TG+I L I+ E I GIRRI A+TG+ A Sbjct: 772 VKDPRWKGV-SIEFCGGTHVQKTGDIKDLVILEEGGIAKGIRRIIAVTGEDA 822 >gi|213512300|ref|NP_001133550.1| Alanyl-tRNA synthetase, cytoplasmic [Salmo salar] gi|209154450|gb|ACI33457.1| Alanyl-tRNA synthetase, cytoplasmic [Salmo salar] Length = 967 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 327/974 (33%), Positives = 500/974 (51%), Gaps = 102/974 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + IR F++FF ++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAAQIREKFIDFFIRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A +A +LLTKE Sbjct: 66 LKRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACTMALELLTKE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + D D E ++W + G+ +II + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGHEEAGLDPDLECKQIWLDL-GMDEARIIPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI FD+ GG + + + +EIWNLVF+Q+ ++++ E LPK SIDT Sbjct: 185 GPCSEIHFDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQYNRESETELKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF QA ++ TG + Y G + I + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFIPYFQAIQKGTGARDYTGKVGAEDVDGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + ++DG P N GRGYVLRRI+RRA+ Y+ LG + L+ + +G A Sbjct: 301 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQKGFFATLVDVVVESLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+E+F KTL RG +LD + LG + + GD A+ LYDT+G Sbjct: 361 FPELKKDPDMVKDIINEEEEQFLKTLSRGRKILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW---FSLKEKYG 453 PLD+ I RG+ +D+ +F EE++ A+ S G GSG + I +++++ Sbjct: 421 PLDLTALIAEERGMM-VDVAAF----EEEKKAAQVKSQGKGSGDEDHIMLDIYAIEDLRN 475 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 D L+ S + K + ++ V A+ ++ VEE +GQ+ V Sbjct: 476 KGIAATDDTLKYSYSADDSGKYVFEQ--------AVGTVLALRRERAFVEEVTTGQECGV 527 Query: 514 VFDQTPFYAEAGGQLGDTGCAI--GDGI--RLQITDVQKKAEGIFVHHAIVERGILRTEM 569 + D+T FYAE GGQ D G + D + R++ T + G +V H G L+ Sbjct: 528 LLDKTSFYAEQGGQSFDEGYMLREDDSVDDRMEFTVKNTQVRGGYVLHVGTVYGTLKVGD 587 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++L +D RR + NH+ATH+L+ AL +LG Q GS + PD LRFD T +++ Sbjct: 588 HVILHVDEARRRPIMSNHTATHILNFALREVLG-EADQRGSLVAPDRLRFDFTAKGALST 646 Query: 630 AELKSIEDNVNDII--AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV------ 681 E++ E+ +I A+++ + + AI G A+ Y D VRVVS+ Sbjct: 647 EEVRRTEEIACTMIRDAKHVYAMDTPLAAAKAI-QGLRAVFDETYPDPVRVVSIGIPVAD 705 Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----- 731 G + S CGGTH+ ++G IVSE +I GIRRI A+TG A Sbjct: 706 LLADPSSTAGSLTSIEFCGGTHLRNSGHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKAHR 765 Query: 732 -----RSHLMGQDEKLKSLASFLKVSQGNVVGRVE----EIWEEYRKLQLIHAKRKLQLN 782 R L EK+K + K Q + E + +++K ++ A + L+ Sbjct: 766 KADALRQSLSALGEKVKVQTAPNKDVQKEIADMTEFLGMAVISQWQKDKMREALKGLKKT 825 Query: 783 VEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQSG 823 ++DL ADV + + S +K L + L+ + Sbjct: 826 MDDLDRASKADVQKRVLEKTKEMIDSSPNQPLVVMEMESGASAKALNESLKLLKTQSPQT 885 Query: 824 IIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 ML + + K L V +D+ +R A + + ++ G GGG+ AQ+ G N Sbjct: 886 AAMLFTVDHDAGKIVCLCQVPQDVANRGLKASEWVQELCPLM-DGKGGGKDMSAQATGRN 944 Query: 882 GNKADQAIAGVASF 895 + ++A+ F Sbjct: 945 THCIEEALQMANQF 958 >gi|120403625|ref|YP_953454.1| alanyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1] gi|205830159|sp|A1T8E8|SYA_MYCVP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|119956443|gb|ABM13448.1| alanyl-tRNA synthetase [Mycobacterium vanbaalenii PYR-1] Length = 898 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 321/906 (35%), Positives = 475/906 (52%), Gaps = 66/906 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P + +VQK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPYFLGQRTPPWDRAASVQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT + D Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVEAGGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 RL+ TVY +D+EA W++++GL ++I R DN+WSM GPCGP SEI++D+G Sbjct: 121 PERLWATVYLDDDEAIGYWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFE--QQNKQERF----ILPKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E + +E F LP+ +IDTGMG+ER+A Sbjct: 181 EY--GIEGGPEANEDRYIEIWNLVFMQNERGEGTSKEDFEILGPLPRKNIDTGMGVERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG------NNIVNHRVIVDHLRSSSFLIAD 288 +LQ N Y+ DL + I + V G+ G + V +R+I DH R+++ +I D Sbjct: 239 CLLQGVDNVYETDLLRPAI---DLVAGIAPRGYGQGVHEDDVRYRIIADHSRTAAIIIGD 295 Query: 289 GILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIE 348 G+ P NEGRGYVLRR++RR + A+LLG +P+M L+ + M +YPEL I+ Sbjct: 296 GVSPGNEGRGYVLRRLLRRIIRAAKLLGVDDPIMAELMATVRDAMSPSYPELAADFDRIQ 355 Query: 349 ETLRSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 +E+ F +TL G L D + E L+G AF L+DT+G P+++ ++ Sbjct: 356 RIAVAEETAFNRTLASGSKLFDDAARATKASGAEKLSGRDAFTLHDTYGFPIELTLEMAA 415 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGS 466 L+ +D F + EQR RA+A + + + G T+F G+D L Sbjct: 416 EADLS-VDEEGFRALMAEQRQRAKADAAARKQAHADLSAYRELVDAGPTEFTGFDEL--- 471 Query: 467 KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 + ++L I + +V ++G + ++VE++ D++PFYAE+GG Sbjct: 472 ---SSEARILG----IFVDGKRVPVVAHTGREG-------AQERVELILDRSPFYAESGG 517 Query: 527 QLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 Q+ D G G G + +TDVQK A+ ++ H VE G ++V +D + R Sbjct: 518 QIADEGTVTGTGASETAKAAVTDVQKIAKTLWAHRINVESGEFVEGDTVVAAVDPRWRHG 577 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + HS TH++H AL +LG + Q GS P LRFD +T + IE+ N Sbjct: 578 ATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRSQIEEVTNQA 637 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSST 702 + + V + + A A GA AL G Y D VRVV + GG S LCGGTHV S+ Sbjct: 638 VEADFEVHSFTTELDKAKAMGAMALFGENYPDEVRVVEI----GGPFSLELCGGTHVRSS 693 Query: 703 GEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEE 762 +I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V RV Sbjct: 694 AQIGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVAT 753 Query: 763 IWEEYRKLQ-----LIHAKRKLQLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDAL 816 + E+ R + L A + +I DV ++ + + +L+S++ + Sbjct: 754 LVEKLRAAEKELDRLRLAGARSAAVNAAAGAEQIGDVRLVAQRMAGGISGADLRSLVGEI 813 Query: 817 QKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGG---GGGGGRPH 873 + K+ S ++ I++ SV VV + + V L KV+G G GGG+ Sbjct: 814 RGKLGSDPAVVALIAEGDNDSVPFVVAVNPAAQDRGVRADEL-VKVMGAAVNGRGGGKAD 872 Query: 874 MAQSGG 879 +AQ G Sbjct: 873 LAQGSG 878 >gi|108804197|ref|YP_644134.1| alanyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941] gi|122381811|sp|Q1AWA6|SYA_RUBXD RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|108765440|gb|ABG04322.1| alanyl-tRNA synthetase [Rubrobacter xylanophilus DSM 9941] Length = 882 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 322/920 (35%), Positives = 483/920 (52%), Gaps = 77/920 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR FL+FF + H + PSSSLIP +DPT++ T +G+ F F GQEKP + +V Sbjct: 7 AEIRRRFLDFFAERDHRIYPSSSLIPHDDPTVLLTTAGVQQFIPYFLGQEKPPHPRAASV 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC R DL+ VG + H TFFEMLGNFSFG YFK+ AI AW+ LT+ + R Sbjct: 67 QKCFRT----QDLEEVGDPS-HLTFFEMLGNFSFGDYFKKEAIGWAWEFLTEGLGIPPER 121 Query: 125 LYITVYDEDE------EAFKLWKKISGLSADKIIRITTNDNFWSMA-ETGPCGPCSEIFF 177 L++T+++ DE EA + W ++ G+ KI + ++N+W A ETGPCGPCSEI++ Sbjct: 122 LWVTIFEGDENAPEDLEAKRFWMEV-GVPEHKIFGLPKSENWWGPAGETGPCGPCSEIYY 180 Query: 178 DQGECI-PGGL-------PGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 D GE PG PG E R++E+WNLVF Q+EQ L + IDTGMG Sbjct: 181 DYGEEFGPGDPLEDARYGPGGEEGDARFLEVWNLVFNQYEQLRDGSLRPLEQTGIDTGMG 240 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIA 287 LER+A V+Q + Y+ DL+ +I+ + + TG+ + R++ DH R +FLIA Sbjct: 241 LERIAAVMQGARSVYETDLYAPVIERAREYTGVALGDGEETDRALRILADHARGMAFLIA 300 Query: 288 DGILPANEGRGYVLRRIMRRAM--CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 DG+ P N+ R YVLRRI+RRA Y R G + L + MG + EL +A+ Sbjct: 301 DGVRPGNQRREYVLRRIIRRATREAYGRF-GLDAGRIASLAETVADYMGGFWGELREARD 359 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 I + SE RF G+ LL+ +S L + G+VAF L+DT+G P+++ +++L Sbjct: 360 EIRRVVESEAARFIDIYHSGMRLLEAEISRL-EGGRFPGEVAFTLHDTYGFPVEVTREVL 418 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 RG++ +D F +A+E QR RAR G E+ + +++ ++F+GY+ Sbjct: 419 AERGIS-LDEAGFRRAMERQRERAREALEG-----HERAVAAFRDREIRSRFVGYER--- 469 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + ++L +P D +GE+ +V ++ PFYA G Sbjct: 470 ---EQAETRILAIEPVPD-------------AEGELY----------LVLEENPFYATGG 503 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ+ DTG + +L++ D + V A VERG +V +I+ R+Q+ Sbjct: 504 GQVADTGWISSEKGQLEVVDAIPAGD-YQVLRARVERGRFEAGDEVVASINRVRRQQIEA 562 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ATH+LH AL +LG V Q GS + PD LRFD +S +T EL +++ I + Sbjct: 563 NHTATHILHWALRAVLGKEVVQAGSYVGPDRLRFDYRYSGRVTEEELARVQELCLLKITE 622 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 N PV E+A GA L G KY + VRVV V DG S LCGGTHV T EI Sbjct: 623 NQPVRYYTTTLEEARKLGAIMLFGEKYGELVRVVEV---DG--FSRELCGGTHVRGTAEI 677 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQ----GNVVGRV- 760 I S A + RIE ITG+ A +L E + LA+ L++ V R+ Sbjct: 678 GAFKITSNRRHGADLYRIEVITGREALYYLTRAAETAERLAAELRLPGVEELPEAVSRLR 737 Query: 761 EEIWEEYRKLQLIHAKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQK 818 EE+ + +L+ KR L+ V L + I ++ ++ D ++L+ + D ++ Sbjct: 738 EELQQAREELRQQALKRGLE-EVGSLVENAESIDGTKVVTGRVAAADVRDLRQISDDVRN 796 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 ++ + +++ + KA ++ ++ R A D+ R +A +LGGGGGG P MAQ+G Sbjct: 797 RVGGPVAVVLAADLDGKAVLVANFHPEVSKRVKAGDVVREAAGILGGGGGGS-PTMAQAG 855 Query: 879 GPNGNKADQAIAGVASFLKK 898 G N A+ V L + Sbjct: 856 GGNLEAIPAALERVRQILSR 875 >gi|190407630|gb|EDV10897.1| alanyl-tRNA synthetase [Saccharomyces cerevisiae RM11-1a] gi|207340860|gb|EDZ69081.1| YOR335Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|259149812|emb|CAY86616.1| Ala1p [Saccharomyces cerevisiae EC1118] gi|323352223|gb|EGA84760.1| Ala1p [Saccharomyces cerevisiae VL3] Length = 958 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P T Sbjct: 11 ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ + Sbjct: 71 KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RLY+T ++ DE EA +LWK + G+ D I+ DNFW M + GPCG Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG +S + +E+WNLVF+QF ++ LP IDTG Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278 MG ER+ +VLQ+ +NYD D+F L + +++T ++ Y GN N +RV+ DH Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L P L +++ Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394 +PEL + + E L E+ F KTLDRG L + S K E L+G ++LYDT+ Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID F +A +E A G ++ I ++ E Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 477 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510 + E K + G +++ I++ + V+E G+K Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523 Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE GGQ DTG I D + +VQ G H +E G L Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ + D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 ELK +ED N+ I +NL V + + + A + G A+ G Y D VRVVSV Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756 >gi|256272535|gb|EEU07514.1| Ala1p [Saccharomyces cerevisiae JAY291] Length = 958 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P T Sbjct: 11 ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ + Sbjct: 71 KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RLY+T ++ DE EA +LWK + G+ D I+ DNFW M + GPCG Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG +S + +E+WNLVF+QF ++ LP IDTG Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278 MG ER+ +VLQ+ +NYD D+F L + +++T ++ Y GN N +RV+ DH Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L P L +++ Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394 +PEL + + E L E+ F KTLDRG L + S K E L+G ++LYDT+ Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID F +A +E A G ++ I ++ E Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 477 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510 + E K + G +++ I++ + V+E G+K Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523 Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE GGQ DTG I D + +VQ G H +E G L Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ + D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 ELK +ED N+ I +NL V + + + A + G A+ G Y D VRVVSV Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756 >gi|6324911|ref|NP_014980.1| Ala1p [Saccharomyces cerevisiae S288c] gi|1163069|emb|CAA89980.1| ALA1 [Saccharomyces cerevisiae] gi|1420729|emb|CAA99658.1| ALA1 [Saccharomyces cerevisiae] gi|285815203|tpg|DAA11096.1| TPA: Ala1p [Saccharomyces cerevisiae S288c] Length = 958 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P T Sbjct: 11 ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ + Sbjct: 71 KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RLY+T ++ DE EA +LWK + G+ D I+ DNFW M + GPCG Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG +S + +E+WNLVF+QF ++ LP IDTG Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278 MG ER+ +VLQ+ +NYD D+F L + +++T ++ Y GN N +RV+ DH Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L P L +++ Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394 +PEL + + E L E+ F KTLDRG L + S K E L+G ++LYDT+ Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID F +A +E A G ++ I ++ E Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 477 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510 + E K + G +++ I++ + V+E G+K Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523 Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE GGQ DTG I D + +VQ G H +E G L Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ + D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 ELK +ED N+ I +NL V + + + A + G A+ G Y D VRVVSV Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756 >gi|151945412|gb|EDN63655.1| alanyl-tRNA synthetase [Saccharomyces cerevisiae YJM789] Length = 958 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P T Sbjct: 11 ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ + Sbjct: 71 KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RLY+T ++ DE EA +LWK + G+ D I+ DNFW M + GPCG Sbjct: 131 GIPKDRLYVTYFEGDENLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG +S + +E+WNLVF+QF ++ LP IDTG Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278 MG ER+ +VLQ+ +NYD D+F L + +++T ++ Y GN N +RV+ DH Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L P L +++ Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394 +PEL + + E L E+ F KTLDRG L + S K E L+G ++LYDT+ Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID F +A +E A G ++ I ++ E Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 477 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510 + E K + G +++ I++ + V+E G+K Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523 Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE GGQ DTG I D + +VQ G H +E G L Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ + D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 ELK +ED N+ I +NL V + + + A + G A+ G Y D VRVVSV Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756 >gi|118617374|ref|YP_905706.1| alanyl-tRNA synthetase [Mycobacterium ulcerans Agy99] gi|205830158|sp|A0PPG6|SYA_MYCUA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|118569484|gb|ABL04235.1| alanyl-tRNA synthetase AlaS [Mycobacterium ulcerans Agy99] Length = 901 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 326/907 (35%), Positives = 482/907 (53%), Gaps = 66/907 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYATATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT + LD Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSVADGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 +L+ TVY +D+EA LW++++GL AD+I R DN+WSM GPCGP SEI++D+G Sbjct: 121 PEKLWATVYLDDDEAAGLWREVAGLPADRIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234 + P G P +E+ RY+EIWNLVFMQ E+ K++ IL P+ +IDTGMG+ER+A Sbjct: 181 DYGPEGGPVVNED--RYLEIWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMGVERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI--VNHRVIVDHLRSSSFLIADGIL 291 +LQ N Y+ DL + +I Y +GN+ V +R+I DH R+++ LIADG+ Sbjct: 239 LILQGVPNVYETDLLRPIIDLVAARAPRGYDQGNHADDVRYRIIADHSRTAAILIADGVS 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + A+LL ++ L+ + MG +YPEL I Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLNIDTAIVGDLMATVRDAMGPSYPELASDSDRINRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L D V + +++G AF L+DT+G P+++ ++ G Sbjct: 359 VAEETAFNRTLASGSRLFDEVAGATRSSGVSVVSGSDAFTLHDTYGFPIELTLEMASEAG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D F + + +QR RA+A + + + G T+F G+D L + Sbjct: 419 LT-VDEGGFRELMAQQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELTSEARI 477 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 L V +V G +AV +VE+V D+TP YAE+GGQ+ Sbjct: 478 --------------LGIFVDGKRVPVVAHG----QAVDADRVELVLDRTPLYAESGGQIA 519 Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D G G G R +TDVQK A+ +++H VE G +V D R+ + Sbjct: 520 DVGTISGTGSGSSARAAVTDVQKIAKTLWLHRVNVESGEFVEGDGVVAAADAGWRKGATQ 579 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG + Q GS P LRFD P+T + IE+ N + Sbjct: 580 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRGQIEEVTNQAVQA 639 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T E A A GA AL G Y D VRVV + GG S LCGGTHV+++ +I Sbjct: 640 DFAVHTFTEQLEKAKAMGAMALFGECYPDEVRVVEI----GGPFSIELCGGTHVATSAQI 695 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+ ESSI +G+RR+EA G + HL + + LAS LKV V RV + E Sbjct: 696 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVASLVE 755 Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDALQKK 819 + + + +L +I +V ++ + SE+ +L++++ ++ K Sbjct: 756 RLKAAEKELERARLASVRAAAVNAAAGAERIGNVRLVAQRMSSEMTPADLRTLVGDIRGK 815 Query: 820 IQSG---IIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLAR-LSAKVLGGGGGGGRP 872 + S + ++ + + ++V VV + + A +L + L+A V G GGG+ Sbjct: 816 LGSDPAVVALIAAPAGGESSTVPYVVAANQAAQGLGLGANELIKHLAAAV--DGRGGGKA 873 Query: 873 HMAQSGG 879 +AQ G Sbjct: 874 DLAQGSG 880 >gi|313104284|sp|P40825|SYA_YEAST RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor Length = 983 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P T Sbjct: 36 ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 95 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ + Sbjct: 96 KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 155 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RLY+T ++ DE EA +LWK + G+ D I+ DNFW M + GPCG Sbjct: 156 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 214 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG +S + +E+WNLVF+QF ++ LP IDTG Sbjct: 215 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 270 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278 MG ER+ +VLQ+ +NYD D+F L + +++T ++ Y GN N +RV+ DH Sbjct: 271 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 330 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L P L +++ Sbjct: 331 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 390 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394 +PEL + + E L E+ F KTLDRG L + S K E L+G ++LYDT+ Sbjct: 391 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 450 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID F +A +E A G ++ I ++ E Sbjct: 451 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 502 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510 + E K + G +++ I++ + V+E G+K Sbjct: 503 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 548 Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE GGQ DTG I D + +VQ G H +E G L Sbjct: 549 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 607 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ + D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ Sbjct: 608 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 667 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 ELK +ED N+ I +NL V + + + A + G A+ G Y D VRVVSV Sbjct: 668 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 727 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A Sbjct: 728 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 781 >gi|170092939|ref|XP_001877691.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647550|gb|EDR11794.1| predicted protein [Laccaria bicolor S238N-H82] Length = 955 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 324/970 (33%), Positives = 495/970 (51%), Gaps = 109/970 (11%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59 + +R F FF+ H +PSS IP +DPTL+F N+GM +K+IF G P + Sbjct: 13 ARVREEFFNFFRSKNHTFVPSSPTIPFDDPTLLFANAGMNQYKSIFLGTVDPNSDMSRLK 72 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W+LLT + Sbjct: 73 RAFNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTDVYK 132 Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L + RLY+T ++ D EA + W G+ D I+ DNFW M TGPCGP Sbjct: 133 LPKDRLYVTYFEGDPNNGLEPDLEAKQYWLD-QGVDEDHILPGNAKDNFWEMGATGPCGP 191 Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 C+EI FD+ GG + +++ +EIWN VF+QF +++ LP +DTGM Sbjct: 192 CTEIHFDR----VGGRNAAHLVNQDDPDVLEIWNNVFIQFNREDNGSLKPLPSKHVDTGM 247 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHL 279 G ER+ +++Q+K +NYD D+F + ++TG++ YEG + +RV+ DH+ Sbjct: 248 GFERLVSIVQDKRSNYDTDVFLPIFDKIRELTGVRPYEGRFDADDVDGIDTAYRVVADHI 307 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYT-EPLMMHLLPALCTEMGSAY 337 R+ +F ++DG +P N GRGYVLRRI+RR YAR LG LLP + MG+ + Sbjct: 308 RTLTFALSDGGIPNNVGRGYVLRRILRRGARYARKKLGVKIGCFFSSLLPVVVETMGAVF 367 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHG 395 PE+ + I+E L E+E F +TLDRG L D + + + LNG ++LYDT G Sbjct: 368 PEITRKVDDIKEILDEEEESFSRTLDRGEKLFDQFATRAKEQGLKELNGRDVWRLYDTFG 427 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + GL G++ F +A + ++A S +G T Sbjct: 428 FPVDLTRLMAEELGL-GVNDQEFEEAQAWSKEASKASSKQVG-----------------T 469 Query: 456 QFIGYDLLRGSKFMKE-DRKVLCQKPPIDLTNGVSSIVKAIV------QQGEIVEEAVSG 508 + D+ + K+ D +L N + ++VKAI Q +I+ E G Sbjct: 470 SIVKLDVHDTAALEKDTDIPKTDDSAKFNLGN-IRALVKAIFYEKSFPQSTDIMPE---G 525 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRT 567 ++ D+T FYAEAGGQ DTG + DG+ ++T+VQ G +H ++ G L Sbjct: 526 ATFGIILDKTSFYAEAGGQEYDTGNIVIDGVADFEVTNVQS-YNGYVLHTGHLKYGQLAV 584 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 ++ + D R L NH+ATH+L+ L +LG H+ Q GS + P LRFD +H I Sbjct: 585 GKEVISSYDELRRWPLRNNHTATHILNFCLREVLGDHIDQKGSLVAPTKLRFDFSHKAQI 644 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDG 686 + +EL IE D I +N+ V ++ + E A G A+ G Y D VRVV++EY+ Sbjct: 645 SHSELSRIEATSVDWIKRNVKVFSKDLELETASKIPGLRAVFGESYPDPVRVVTLEYDVD 704 Query: 687 GVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH- 734 + S CGGTHV+ TG+I I ES I GIRRI AITG A S Sbjct: 705 EIAKDIENPKWRRTSVEFCGGTHVARTGDIKDFIITEESGIAKGIRRIVAITGHEAHSAA 764 Query: 735 -----LMGQDEKLKSLA--------SFLKVSQGNVVGRVEEIWEEYRKLQLIH------- 774 L G+ E++ SL L + G V + E +L +I Sbjct: 765 RHALLLQGRLEQIDSLTGKNKDAALKALSIELGQADISVLKKAELRDRLAVIRKAVDKQV 824 Query: 775 AKRKLQLNVEDLSC---HKIADVNFMSHIIS---EVDSKELKSVMDALQKKIQSGIIMLV 828 +R+ +N E + H + ++I S + ++K L++V+ + +K+Q + + Sbjct: 825 KEREAVVNREAIDTIQRHFNDNEKAETYIASLNVDGNAKILQAVI-SQGRKLQKAVYLFS 883 Query: 829 GISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKAD 886 + + + V + + D ++KV+G GG GG+ AQ G +G++ D Sbjct: 884 VDPESNTVAHVNYVPPEF--KTKGADARTWASKVVGILGGKAGGKEDSAQGVGSDGHRLD 941 Query: 887 QAIAGVASFL 896 +A+ ++ Sbjct: 942 EALVAAQLYV 951 >gi|91084029|ref|XP_966465.1| PREDICTED: similar to alanyl-tRNA synthetase [Tribolium castaneum] gi|270006700|gb|EFA03148.1| hypothetical protein TcasGA2_TC013061 [Tribolium castaneum] Length = 965 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 290/781 (37%), Positives = 429/781 (54%), Gaps = 78/781 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R ++ FF++ H+ + SSS IP +DPTL+FTN+GM FK IF G P + +A Sbjct: 10 VRNAYINFFKEKNHDYVHSSSTIPLDDPTLLFTNAGMNQFKPIFLGTVDPNSDLAKLTRA 69 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V + QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+ LTK L Sbjct: 70 VNS-QKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTKRLHL 128 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 RLY+T + + D E ++W + G+ ++ + DNFW M ETGPCGPC Sbjct: 129 PGDRLYVTYFGGDKAAGLEPDNECKQIWLGL-GVPESHVLPGSMKDNFWEMGETGPCGPC 187 Query: 173 SEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 SE+ FD+ G +P + +++ +EIWNLVF+Q+ +++ LPK ID G+GL Sbjct: 188 SELHFDRIGGRDVPELV---NQDDPDVLEIWNLVFIQYNRESDGSLKFLPKKHIDCGLGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +++Q K +NYD DLF L A ++ TG G I + +RV+ DH R+ Sbjct: 245 ERLVSIMQNKRSNYDTDLFLPLFDAIQKGTGAPPYGGKIGDADKDGIDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPEL 340 + ++DG P N GRGYVLRRI+RRA+ YA +P L E +G +PE+ Sbjct: 305 ITIALSDGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFSTLVNTVVEILGDTFPEV 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + I +T+ E+E+F KTL RG LL+ ++ LG + L GDVA++LYDT+G P+D+ Sbjct: 365 CKDPQSIIDTINEEEEQFLKTLSRGRNLLNRTITKLGDSKTLPGDVAWRLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG- 459 Q + +GL +D+ + EE + A+ S G GSG + I + Q +G Sbjct: 425 TQLMAEEKGL-NVDMAVY----EESKKLAQIASQGKGSGVEDTINLDV-HAITELQNLGV 478 Query: 460 --------YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 Y+ + GS +E + LC S V A+ + VE+ +GQ+ Sbjct: 479 PPTDDAPKYNYIAGSGINEEYKFELCH-----------STVIALRHNKQFVEQVHTGQEC 527 Query: 512 EVVFDQTPFYAEAGGQLGDTG--CAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 ++ D+T FYAE GGQ+ DTG IGD + + +VQ + G +H +E G L+ Sbjct: 528 GILLDKTNFYAEQGGQIYDTGYIVKIGDESVEFSVKNVQVRG-GYVIHIGSLE-GTLKKG 585 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + L +D RR + NH+ TH+L++AL +LG+ Q GS + PD LRFD T+ +T Sbjct: 586 DKVALHVDSARRRLIMNNHTGTHVLNYALRKVLGTEADQRGSLVAPDRLRFDFTNKGAMT 645 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV---- 681 ++K+ E N ++I++N V + N A+A G A+ Y D VR+VS+ Sbjct: 646 VDQVKNTELNSKELISRNDQVFAKESNL--AVAKTIRGLRAVFEETYPDPVRIVSIGIPV 703 Query: 682 ------EYEDGGVHSS-ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734 + G ++S CGGTH+ +G I I SE +I GIRRI A+TG A Sbjct: 704 EKLEVDPFGPAGDNTSIEFCGGTHLKYSGHIGDFVIASEEAIAKGIRRIVALTGPEATKA 763 Query: 735 L 735 L Sbjct: 764 L 764 >gi|45188236|ref|NP_984459.1| ADR363Cp [Ashbya gossypii ATCC 10895] gi|44983080|gb|AAS52283.1| ADR363Cp [Ashbya gossypii ATCC 10895] Length = 956 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 289/771 (37%), Positives = 422/771 (54%), Gaps = 72/771 (9%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQ 59 ++R+TF+++F+ H+L+PSS +IP +DPTL+F N+GM FK IF G P + + Sbjct: 13 NVRSTFIDYFKAKDHKLVPSSPVIPYDDPTLLFANAGMNQFKPIFLGMVDPASDFYTLKR 72 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 AV T QKC+RAGGKHNDL++VG + HHTFFEMLGN+SFG YFK+ AI +W+LLTK + Sbjct: 73 AVNT-QKCIRAGGKHNDLEDVGLDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTKVYG 131 Query: 120 LDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L + RLY+T + DE DEEA LW + G++ D +I DNFW M + GPCGP Sbjct: 132 LPEDRLYVTYFEGDESLGLAADEEARDLWLSV-GVAPDHVIAANVKDNFWEMGDQGPCGP 190 Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSE+ FD+ GG ++ ++ IEIWN VF+QF +++ LP +DTGM Sbjct: 191 CSEVHFDR----IGGRNAAALVNQDDPNVIEIWNNVFIQFNREHDGSLRPLPAKHVDTGM 246 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHL 279 G ER+ +VLQ+ +NYD D+F+ L +++TG++ Y G + +RV+ DH+ Sbjct: 247 GFERLVSVLQDVPSNYDTDVFQPLFARIQEITGVRPYSGKFGADDKDGIDTAYRVLADHV 306 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGY-TEPLMMHLLPALCTEMGSAY 337 R+ + +ADG +P N+GRGYVLRRI+RR Y R + Y T L P L + Y Sbjct: 307 RTLTIALADGGVPDNDGRGYVLRRILRRGARYVRKYMNYPTGKFFSQLAPTLIEQFKDVY 366 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDTH 394 PEL + + + + L E+ F KTLDRG L + + K+ +IL+G ++LYDT+ Sbjct: 367 PELTKNQSYLFDILDEEEASFAKTLDRGEKLFEK-YAETAKNSGSKILDGKQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ Q + GL +D F QA +E ++ + G I ++ E Sbjct: 426 GFPVDLTQLMADEHGLK-VDNEGFEQAKQESYEASKKNG---SKGDANLIKLNVHE---V 478 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVEV 513 +Q + R K T + + + I VE+ G++ + Sbjct: 479 SQLSDEGVPRTDDSAKYG------------TQDIEATILRIHDGENFVEQMTEVGKQYGI 526 Query: 514 VFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ D G I D + +VQ+ + +F H + G L ++ Sbjct: 527 LLDRTCFYAEQGGQEYDKGKLVIDDAAEFNVDNVQQYSGYVF-HTGNLADGKLCVGDKII 585 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 + D R + NH+ THLL+HAL TILG ++ Q GS +TP+ LRFD +H KP++ EL Sbjct: 586 ASYDELRRYPIRNNHTGTHLLNHALRTILGDNIDQRGSLVTPEKLRFDFSHKKPMSYEEL 645 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---------- 681 + +E N I +N V + + + A + A+ G Y D VRVVSV Sbjct: 646 EQVETICNQQIRENRSVYYKDIPLDVAKSIHSIRAVFGETYPDPVRVVSVGKSVDEILES 705 Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ +S LCGGTHVS TG+I I+ ES I GIRRI A++ A Sbjct: 706 PSNEEWAKYSIELCGGTHVSKTGDIKEFVIIEESGIAKGIRRIVAVSASEA 756 >gi|183982183|ref|YP_001850474.1| alanyl-tRNA synthetase AlaS [Mycobacterium marinum M] gi|205830153|sp|B2HNC1|SYA_MYCMM RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|183175509|gb|ACC40619.1| alanyl-tRNA synthetase AlaS [Mycobacterium marinum M] Length = 901 Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust. Identities = 326/916 (35%), Positives = 483/916 (52%), Gaps = 64/916 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P Y T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYATATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK AI+LAW LLT + LD Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSVADGGYGLD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG- 180 +L+ TVY +D+EA LW++++GL AD+I R DN+WSM GPCGP SEI++D+G Sbjct: 121 PEKLWATVYLDDDEAAGLWREVAGLPADRIQRRGMADNYWSMGIPGPCGPSSEIYYDRGP 180 Query: 181 ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234 + P G P +E+ RY+EIWNLVFMQ E+ K++ IL P+ +IDTGMG+ER+A Sbjct: 181 DYGPEGGPVVNED--RYLEIWNLVFMQNERGEGTTKEDYEILGPLPRKNIDTGMGVERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY-EGNNI--VNHRVIVDHLRSSSFLIADGIL 291 +LQ N Y+ DL + +I Y +GN+ V +R+I DH R+++ LIADG+ Sbjct: 239 LILQGVPNVYETDLLRPIIDLVAARAPRGYDQGNHADDVRYRIIADHSRTAAILIADGVS 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + A+LL ++ L+ + MG +YPEL I Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLNIDTAIVGDLMATVRDAMGPSYPELASDFDRINRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGV--LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARG 409 +E+ F +TL G L D V + +++G AF L+DT+G P+++ ++ G Sbjct: 359 VAEETAFNRTLASGSRLFDEVAGTTRSSGVSVVSGSDAFTLHDTYGFPIELTLEMASEAG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 L +D F + + +QR RA+A + + + G T+F G+D L + Sbjct: 419 LT-VDEGGFRELMAQQRRRAKADAAARKHAHADLTAYRELVDAGPTEFTGFDELTSEARI 477 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 L V +V G +AV +VE+V D+TP YAE+GGQ+ Sbjct: 478 --------------LGIFVDGKRVPVVAHG----QAVDADRVELVLDRTPLYAESGGQIA 519 Query: 530 DTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 D G G G R +TDVQK A+ +++H VE G +V D R+ + Sbjct: 520 DVGTISGTGSGSSARAAVTDVQKIAKTLWLHRVNVESGEFVEGDGVVAAADAGWRKGATQ 579 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 HS TH++H AL +LG + Q GS P LRFD P+T + IE+ N + Sbjct: 580 GHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTEEQRGQIEEVTNQAVQA 639 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V T E A A GA AL G Y D VRVV + GG S LCGGTHV+++ +I Sbjct: 640 DFAVHTFTEQLEKAKAMGAMALFGESYPDEVRVVEI----GGPFSIELCGGTHVATSAQI 695 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 + I+ ESSI +G+RR+EA G + HL + + LAS LKV V RV + E Sbjct: 696 GPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVASLVE 755 Query: 766 EYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDALQKK 819 + + + +L +I +V ++ + SE+ +L++++ ++ K Sbjct: 756 RLKAAEKELERARLASVRAAAVNAAAGAERIGNVWLVAQRMSSEMTPADLRTLVGDIRGK 815 Query: 820 IQSG---IIMLVGISKEKKASVLIVVTEDLLDR---FNAVDLARLSAKVLGGGGGGGRPH 873 + S + ++ + + ++V VV + + A +L + A + G GGG+ Sbjct: 816 LGSDPAVVALIAAPAGGESSTVPYVVAANRAAQGLGLGANELIKHLATAV-DGRGGGKAD 874 Query: 874 MAQSGGPNGNKADQAI 889 +AQ G D A+ Sbjct: 875 LAQGSGKKPAGIDAAL 890 >gi|323307226|gb|EGA60508.1| Ala1p [Saccharomyces cerevisiae FostersO] Length = 833 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P T Sbjct: 11 ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ + Sbjct: 71 KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RLY+T ++ DE EA +LWK + G+ D I+ DNFW M + GPCG Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG +S + +E+WNLVF+QF ++ LP IDTG Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278 MG ER+ +VLQ+ +NYD D+F L + +++T ++ Y GN N +RV+ DH Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L P L +++ Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394 +PEL + + E L E+ F KTLDRG L + S K E L+G ++LYDT+ Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID F +A +E A G ++ I ++ E Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQES---YEASKRGGKKDQSDLIKLNVHE---- 477 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510 + E K + G +++ I++ + V+E G+K Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523 Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE GGQ DTG I D + +VQ G H +E G L Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ + D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 ELK +ED N+ I +NL V + + + A + G A+ G Y D VRVVSV Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756 >gi|227496182|ref|ZP_03926488.1| alanine--tRNA ligase [Actinomyces urogenitalis DSM 15434] gi|226834265|gb|EEH66648.1| alanine--tRNA ligase [Actinomyces urogenitalis DSM 15434] Length = 904 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 330/949 (34%), Positives = 502/949 (52%), Gaps = 105/949 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S IR+ +L++F GHE+ PS SL+ +P+++FT +GMVPF G E+ + + Sbjct: 3 TSEIRSRWLDYFASQGHEIRPSVSLV-SPEPSILFTVAGMVPFIPYILGTEQAPWPRAAS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-----EF 118 VQKC+R ND+DNVGRT RH TFF+M GNFSFG YFKE AI AWDLLT ++ Sbjct: 62 VQKCIRT----NDIDNVGRTTRHGTFFQMNGNFSFGDYFKEGAISYAWDLLTGPQSEGKY 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RL++T++++DE ++ K+ G+ + ++ + WS + GP G C EI +D Sbjct: 118 GLDGDRLWMTIWEKDEVSWNHLTKVIGVPQQHVQKLPFEEISWSTGQPGPAGACCEIHYD 177 Query: 179 QG-ECIPGGLPGSSEEGERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLER 232 +G + P G P + +G+R++EIWNLVF +F E + + L + +IDTG GLER Sbjct: 178 RGAQYGPDGGPVADAQGDRFLEIWNLVFDEFLRGEGEGHDFELVGKLDQTAIDTGAGLER 237 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRS 281 +A ++Q+K N Y+ID +I A+E ++G KY + V RV+ DH+RS Sbjct: 238 LAFIMQDKPNMYEIDEVYPVIAAAEAMSGKKYGLGAAGPSAGQAYEDDVRMRVVADHVRS 297 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LI DG+ P N+GRGYVLRR++RRA+ RLLG + M LL A M +YPEL Sbjct: 298 ALMLIGDGVRPGNDGRGYVLRRLIRRAVRSMRLLGVQDAAMPTLLTASKDVMKLSYPELE 357 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-------GKDEILNGDVAFKLYDTH 394 I E +E++ F +TL G +LD ++ G ++ G VAF+L+DT Sbjct: 358 TGWAQISEVAYAEEDAFRRTLAAGTTILDTAVAAAKEKAKDSGTKPVVPGSVAFELHDTS 417 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY-- 452 G P+D+ ++ +G+ +D ++F + EQ+ RARA + +G + F EK Sbjct: 418 GFPIDLTLEMAAEQGVE-VDELAFRNLMAEQKERARADARAKKAGHADIRAFQEIEKAMG 476 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 G + F+GY + ++V ++ G + +VE Sbjct: 477 GGSTFLGY-----------------------TESSAEAVVTGLLVDGVPQPAVTAPAEVE 513 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV------QKKAEGIFVHHAIVERGILR 566 VV D+TPFYAE GGQL D G IRL V Q G+ VH + G + Sbjct: 514 VVLDRTPFYAEMGGQLADQGV-----IRLADGGVVEVVDVQAPIRGLSVHRGRLTEGTIA 568 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 ID R ++ H+ATH+++ L ++ H Q GS +P LRFD H Sbjct: 569 LGERAYAEIDSARRLAIARAHTATHMVYAGLRQVVNEHADQAGSENSPSRLRFDFRHGSA 628 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 +++ ++ IE VND +AQ+L V T +M+ ++A +GA AL G KY VRVV++ G Sbjct: 629 LSAGQVGDIEALVNDKLAQDLTVRTDVMSLDEARQAGAIALFGEKYGTEVRVVTI----G 684 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 LCGGTHV STG I + ++ ESSI +G+RRI+A+ G A D + K A Sbjct: 685 DGFDKELCGGTHVPSTGHIGRVAVLGESSIGSGVRRIDALVGDGA------YDFQAKEHA 738 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADVN--------- 795 +V+ V GR +E+ E L +L A++KL + K A+V Sbjct: 739 LVSQVT-AIVGGRSDELPERIASLMTRLKEAEKKLAAAEQAAMVAKAAEVVDSAERVGGY 797 Query: 796 -FMSHIISEVDSKE-LKSVMDALQKKIQSG---IIMLVGISKEKKASVLIVVTEDLLDR- 849 S + V S + L+S++ +++++ G ++ + G+S E+ L++V + R Sbjct: 798 LLASANLGSVGSADALRSLVLDVRQRLGEGEPAVVAVGGVSGERP---LVIVATNGAARD 854 Query: 850 --FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 A DL R++AK L GGGGGG+P +AQ GG + D+A+ ++ L Sbjct: 855 LGAKAGDLVRVAAKTL-GGGGGGKPDLAQGGGQDAAALDEALRALSHAL 902 >gi|229820505|ref|YP_002882031.1| alanyl-tRNA synthetase [Beutenbergia cavernae DSM 12333] gi|229566418|gb|ACQ80269.1| alanyl-tRNA synthetase [Beutenbergia cavernae DSM 12333] Length = 896 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 302/803 (37%), Positives = 455/803 (56%), Gaps = 74/803 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L++F + H ++PS+SLI DP+++FT +GMVPF G E+ Y +V Sbjct: 4 AEIRRRYLDYFAERDHTVVPSASLISA-DPSILFTIAGMVPFIPYIVGTEQAPYSRAVSV 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FD 119 QKC+R ND++ VGRT RH TFF+M GNFSFG YFKE A++ AW+L+T F Sbjct: 63 QKCIRT----NDIEEVGRTTRHGTFFQMNGNFSFGDYFKEGAVEFAWELMTSSQDDGGFG 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD L++TV++ED E ++ +++ A++++ ++ D+FW + GP GP +E D+ Sbjct: 119 LDPDLLWVTVWEEDAETARVLREVIDFPAERVVPLSRADSFWDTGQPGPAGPTAEWHLDR 178 Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFI--LPKMSIDTGMGLERM 233 G + P G P G+RY+E WNLVF +F + K + LP SIDTGMGLER+ Sbjct: 179 GADRGPDGGPAVDTAGDRYVEFWNLVFDEFLRGPGPGKDYPLLGELPMKSIDTGMGLERV 238 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291 A +LQ K N Y+ID +I +E+++G +Y + + V RV+ DH+RS+ L++DG+ Sbjct: 239 AAILQGKDNIYEIDEVFGVIARAEELSGRRYGASREDDVRMRVVADHVRSAMMLVSDGVK 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P+NEGRGYVLRR++RR++ RLLG T+P + LLP M ++YPEL I + Sbjct: 299 PSNEGRGYVLRRLLRRSVRAMRLLGVTDPALPELLPVSKDVMKASYPELEADFGRISTIV 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARG 409 E++ F +TL G +LD + L + L G+ AF L+DT+G P+D+ ++ +G Sbjct: 359 YDEEDAFRRTLTSGTTILDTAVRRLKESGGSQLGGEQAFALHDTYGFPIDLTLEMAAEQG 418 Query: 410 LAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGA-TQFIGYDLLRGSK 467 ++ +D +F + + EQR+RARA +L SG + ++ + A F+GY Sbjct: 419 VS-VDEEAFRRLMGEQRARARADALAKRSGHADTSVYRDIAGSLPAPVSFLGY------- 470 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSI-VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGG 526 T+ + + V ++ G A + +VEVV D+TPFYAEAGG Sbjct: 471 -----------------TDAEARVAVVGLLVDGVPAPAAQAPAEVEVVLDRTPFYAEAGG 513 Query: 527 QLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 QL D G + DG +++ DVQ +G+ VH + G+L S V +ID RR ++ Sbjct: 514 QLADQGQIVLDDGAVVEVDDVQAPIKGLSVHRGRLVEGVLGLGSSGVASIDTARRRAIAR 573 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 H+ATH++H A+ +G +Q GS P RFD + SA L I VN ++A Sbjct: 574 AHTATHMVHKAIREHVGESATQAGSENAPSRFRFDFRSGSALPSAALAEINARVNTLLAD 633 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 +L V +M +DA A+GA AL G KY DRVRVVS+ GG S LC GTHV+STG + Sbjct: 634 DLDVTDEVMALDDARAAGAMALFGEKYGDRVRVVSI----GGDWSKELCAGTHVASTGHL 689 Query: 706 MLLYIVSESSIRAGIRRIEAITGQ-----RARSH-LMGQDEKLKSLASFLKVSQGNVVGR 759 L+ ++ ESSI +G+RR++A+ G +A+ H L+GQ +L V R Sbjct: 690 GLVTLLGESSIGSGVRRVDALVGDGAFGYQAKEHALVGQLTQL-------------VGAR 736 Query: 760 VEEIWEEYRKL--QLIHAKRKLQ 780 EE+ E L +L A+R++Q Sbjct: 737 GEELPERVSSLMTRLKEAEREIQ 759 >gi|323303022|gb|EGA56826.1| Ala1p [Saccharomyces cerevisiae FostersB] Length = 810 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 287/774 (37%), Positives = 417/774 (53%), Gaps = 74/774 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P T Sbjct: 11 ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ + Sbjct: 71 KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RLY+T ++ DE EA +LWK + G+ D I+ DNFW M + GPCG Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG +S + +E+WNLVF+QF ++ LP IDTG Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278 MG ER+ +VLQ+ +NYD D+F L + +++T ++ Y GN N +RV+ DH Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L P L +++ Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394 +PEL + + E L E+ F KTLDRG L + S K E L+G ++LYDT+ Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID F +A +E A G ++ I ++ E Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQES---YEASKRGGKKDQSDLIKLNVHE---- 477 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510 + E K + G +++ I++ + V+E G+K Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523 Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE GGQ DTG I D + +VQ G H +E G L Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ + D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 ELK +ED N+ I +NL V + + + A + G A+ G Y D VRVVSV Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756 >gi|326434145|gb|EGD79715.1| alanyl-tRNA synthetase [Salpingoeca sp. ATCC 50818] Length = 955 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 287/774 (37%), Positives = 421/774 (54%), Gaps = 71/774 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R F+ +F++ GH+ PSSS IP NDPTL+F N+GM +K F G + + +A Sbjct: 13 VRGKFISYFEERGHKFWPSSSTIPFNDPTLLFANAGMNQYKAKFLGTDSKDTDLGKLTRA 72 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG Y+KE AI +WDLLT F L Sbjct: 73 VNS-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYWKEEAIDFSWDLLTNVFQL 131 Query: 121 DQRRLYITVYD------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 D RLYIT ++ DEE LW K + ++I+ DNFW M ETGPCGPC+E Sbjct: 132 DPNRLYITYFEGDSVVPADEETRSLWMK--HVPPERILPFDRKDNFWEMGETGPCGPCTE 189 Query: 175 IFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 I +D+ GG S + + +EIWNLVFMQ+ + LP +DTGMGLE Sbjct: 190 IHYDR----IGGRDASHLVNMDDPDVLEIWNLVFMQYNNEGNGVLKTLPAQHVDTGMGLE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG------NNIVN--HRVIVDHLRSS 282 R+ +VLQ KT+NYD DLF + A ++ G + Y G ++V+ +RV+ DH+R+ Sbjct: 246 RILSVLQNKTSNYDTDLFLPIFAAIKEKCGCREYTGKVNEADTDMVDTAYRVVADHIRTL 305 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELI 341 IADG P +GRGY+LR ++RRA+ + LG E L+P + +G A+PEL Sbjct: 306 CIAIADGGRPDKDGRGYILRLVLRRAIRFCEEYLGAPEYFFASLVPVVVDVLGDAFPELR 365 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + L+ E+ +F +TL RG ++ +G+D +++GD A++L+DT+G P+ + Sbjct: 366 KDPEETIAVLKEEERQFRRTLSRGRRYFKRAVAAVGEDGVIDGDTAWRLWDTYGFPIHLT 425 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----EKYGATQF 457 + RGL +D+ F A +ARA + G + L ++ Sbjct: 426 IVMAEERGLK-VDMDGFEAA------KARAVEISRAGGAAGETNLDLDVNTLDELKKKGV 478 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE----- 512 G D + ++ + ++ +++ + ++G +V+ + E Sbjct: 479 PGTDDAAKYAYTRD------ENGSYSFSDAEGTVLALLTEEGGLVDRVSVSEDDEELPVG 532 Query: 513 VVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 VV D+T FYAE GGQ+ DTG G + L + +VQK+ +H A + +G L+ Sbjct: 533 VVLDKTNFYAEQGGQIYDTGRFESTTGAPLELDVFNVQKRG-AYCLHVATLAQGELKVGD 591 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 L L D+ RR NH+ATH+L++AL ++LG Q GS + P+ LRFD T K +T Sbjct: 592 KLTLKFDHDRRRPCMSNHTATHVLNYALRSVLG-EADQKGSLVEPERLRFDFTAKKGMTP 650 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-DGG 687 +LK E+ VN I+ N V + A A +G A+ G Y D VRV+SV D Sbjct: 651 EQLKQTEEVVNKIVNANYTVYDKDTPLAQARAINGLRAMFGETYPDPVRVLSVGASIDDM 710 Query: 688 V----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 V +S CGGTHV ++G+I I+SE ++ GIRRI A+TGQ A Sbjct: 711 VADPAASYAVDYSVEFCGGTHVKNSGDIGPFTILSEEAVAKGIRRIVAVTGQEA 764 >gi|323335374|gb|EGA76661.1| Ala1p [Saccharomyces cerevisiae Vin13] gi|323346372|gb|EGA80661.1| Ala1p [Saccharomyces cerevisiae Lalvin QA23] Length = 958 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 286/774 (36%), Positives = 416/774 (53%), Gaps = 74/774 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P T Sbjct: 11 ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ + Sbjct: 71 KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RLY+T ++ DE EA +LWK + G+ D I+ DNFW M + GPCG Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG +S + +E+WNLVF+QF ++ LP IDTG Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278 MG ER+ +VLQ+ +NYD D+F L + +++T ++ Y GN N +RV+ DH Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L P L +++ Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394 +PEL + + E L E+ F KTLDRG L + S K E L+G ++LYDT+ Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID F +A +E A G ++ I ++ E Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKKDQSDLIKLNVHE---- 477 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510 + E K + G +++ I++ + V+E G+ Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKX 523 Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE GGQ DTG I D + +VQ G H +E G L Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ + D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 ELK +ED N+ I +NL V + + + A + G A+ G Y D VRVVSV Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756 >gi|315092869|gb|EFT64845.1| alanyl-tRNA synthetase [Propionibacterium acnes HL060PA1] Length = 892 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 315/926 (34%), Positives = 481/926 (51%), Gaps = 72/926 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LLP M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD V + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S +G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRAFGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VEVV +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGASVSAAEPGAVVEVVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPT 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G KY VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 746 RVSKLATDLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|121719583|ref|XP_001276490.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1] gi|119404702|gb|EAW15064.1| alanyl-tRNA synthetase, putative [Aspergillus clavatus NRRL 1] Length = 961 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 295/783 (37%), Positives = 427/783 (54%), Gaps = 96/783 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL+FF+KNGH +PSS ++P +DPTL+FTN+GM FK+IF G P ++ Sbjct: 16 VRDTFLDFFRKNGHTFVPSSPVVPHSDPTLLFTNAGMNQFKSIFLGTVDPHSDFARLKSA 75 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK + +D Sbjct: 76 VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKVYGID 135 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 +RLY+T + + D EA LW + G+ D I+ DNFW M + GPCGPCS Sbjct: 136 PQRLYVTYFEGHEEGGLEPDLEAKALWTAV-GVPEDHILPGNMKDNFWEMGDQGPCGPCS 194 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG S +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 195 EIHYDR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNRETDRTLRPLPNKHVDTGMGF 250 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ +VLQ+K++NYD D+F L A + +TG + Y G + I +RV+ DH+R+ Sbjct: 251 ERLVSVLQDKSSNYDTDVFSPLFGAIKDITGAREYRGMFGSGDADGIDTAYRVVADHVRT 310 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG+ P ++GRGYV+RR++RR YAR E L+P L ++G +PE Sbjct: 311 LTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKLVPILVDQLGEMFPE 370 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGL 396 L + + + E L E+ F KTLDRG + G D++ DV ++LYDT G Sbjct: 371 LRKKQQDVMEILDEEEISFAKTLDRGERQFESYAQQAKLKGNDKLHGADV-WRLYDTFGF 429 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + RGL ID F EE R +A+ S G +K AT Sbjct: 430 PVDLTRLMAEERGLK-IDDTEF----EEARLKAKEASKG--------------QKKSATD 470 Query: 457 FIGYDLLRGSKFMK-EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV--EEAV--SGQKV 511 + D+ K K D ++ N +++ VKAI G++ + AV +G+++ Sbjct: 471 TVKLDVHDLGKLEKMNDVPKTDDSFKFEMCN-INAEVKAIY-HGKVFHSDTAVISAGEQI 528 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 ++ D+T FYAE GGQ D G I DG L+++DVQ A G +H ++ G + Sbjct: 529 GIILDRTNFYAEQGGQENDIGRIIIDGKAELEVSDVQLYA-GYVLHTGFMKYGSFSVGDT 587 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 ++ D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H +T Sbjct: 588 VLCEYDELRRWPIRNNHTGTHILNFALKRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEK 647 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND--------------- 674 EL+ IED + I QN V ++ + A +G A+ G Y D Sbjct: 648 ELERIEDISTEYIRQNCDVYSQEVPLATARQITGVRAVFGETYPDPVRVVSVGVEVEEIL 707 Query: 675 ------RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 R VS+E+ CGGTHV TG+I L I+ ES I GIRRI A+TG Sbjct: 708 QNVKDPRWNEVSIEF----------CGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTG 757 Query: 729 QRA 731 + A Sbjct: 758 EDA 760 >gi|218184221|gb|EEC66648.1| hypothetical protein OsI_32912 [Oryza sativa Indica Group] Length = 953 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 294/773 (38%), Positives = 405/773 (52%), Gaps = 72/773 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57 S +R TF+ FF+ H PSS ++P +DPTL+F N+GM FK +F G P + Sbjct: 9 ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 68 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 +A T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLT+ Sbjct: 69 RRACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQV 127 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L R+Y T + DE E+ +W K L +K++ DNFW M +TGPC Sbjct: 128 YKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPC 185 Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EI FD+ G L + + IEIWNLVF+QF ++ LP +DTGM Sbjct: 186 GPCTEIHFDRVGNRDAASLVNNDD--PTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGM 243 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEGN------NIVN--HRVIVD 277 G ER+ ++LQ K +NYD D+F + A Q+ G Y G + V+ +RV+ D Sbjct: 244 GFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVAD 303 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H+R+ SF IADG P NEGR YVLRRI+RRA+ + + L + L+ MG Sbjct: 304 HIRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDV 363 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLL----DGVLSHLGKDEILNGDVAFKLYD 392 +PEL + I++ ++ E+E F TL +G D V G +L+G AF L+D Sbjct: 364 FPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVKESGGT--VLSGQDAFVLWD 421 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+D+ + + GL+ +D F+ A+EE R +AR G S+ Sbjct: 422 TYGYPVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDA 473 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 AT LR D P + S+VKAI E V A + Sbjct: 474 NATA-----QLRNQGLASTD-----DSPKYGYKDN-DSVVKAIYTGSEYVSAASGDEDFG 522 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMS 570 +V + T FYAE GGQ+ DTG G +T+VQ A G +H +G L Sbjct: 523 LVLESTSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFA-GYVLHMGSFTKGSKALSVGDK 581 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +DY R ++ NH+ TH+L+ AL ILG HV Q GS + P+ LRFD +H KP+ Sbjct: 582 VACKVDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPE 641 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV-------- 681 +L+ IE VN I L V R + DA +G A+ G Y D VRVVSV Sbjct: 642 DLRKIESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLL 701 Query: 682 ---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E ++ S+ LCGGTH+ +T E ++SE I G+RRI A+T + A Sbjct: 702 ANPESKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHA 754 >gi|609338|gb|AAC49007.1| cytoplasmic alanyl-tRNA synthetase [Saccharomyces cerevisiae] gi|1097386|prf||2113423A Ala-tRNA synthetase Length = 958 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 286/774 (36%), Positives = 416/774 (53%), Gaps = 74/774 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P T Sbjct: 11 ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ + Sbjct: 71 KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + LY+T ++ DE EA +LWK + G+ D I+ DNFW M + GPCG Sbjct: 131 GIPKDSLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG +S + +E+WNLVF+QF ++ LP IDTG Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278 MG ER+ +VLQ+ +NYD D+F L + +++T ++ Y GN N +RV+ DH Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L P L +++ Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394 +PEL + + E L E+ F KTLDRG L + S K E L+G ++LYDT+ Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID F +A +E A G ++ I ++ E Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQESY---EASKRGGKRTKSDLIKLNVHE---- 477 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510 + E K + G +++ I++ + V+E G+K Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523 Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE GGQ DTG I D + +VQ G H +E G L Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ + D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 ELK +ED N+ I +NL V + + + A + G A+ G Y D VRVVSV Sbjct: 643 EELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEEL 702 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ +S CGGTHV+ TG+I I+ ES I GIRRI A+TG A Sbjct: 703 LANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756 >gi|196231110|ref|ZP_03129970.1| alanyl-tRNA synthetase [Chthoniobacter flavus Ellin428] gi|196224940|gb|EDY19450.1| alanyl-tRNA synthetase [Chthoniobacter flavus Ellin428] Length = 925 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 334/977 (34%), Positives = 489/977 (50%), Gaps = 141/977 (14%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA---- 60 + IR +FL+FF++ H ++PSSSL+P + P L+FTN+GM F IF G+ K + Sbjct: 4 AQIRQSFLDFFREKQHTIVPSSSLMP-DSPNLLFTNAGMNQFVPIFLGERKADVSSWADA 62 Query: 61 --------------------VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG 100 QKC+RAGGKHNDLD+VG HHTFFEMLGN+SFG Sbjct: 63 VNWFGEKNRDGTLNKTSDTRAADTQKCIRAGGKHNDLDDVGLDTYHHTFFEMLGNWSFGD 122 Query: 101 YFKERAIQLAWDLLTKEFDLDQRRLYITVY----------DEDEEAFKLW-KKISGLSAD 149 YFK+ AI+ AW+L+ + +RLY T+Y D DEEA+ LW +K + D Sbjct: 123 YFKKEAIEWAWELVVGRWKFPPQRLYATIYNPDKSIGDPADRDEEAWNLWAEKFRAVGLD 182 Query: 150 KIIRITT---NDNFWSMAETGPCGPCSEIFFDQGECIPGG-------LPGSSEEGERYIE 199 + I DNFW M ETGPCGPCSE+ D P G G++E IE Sbjct: 183 PAVHIVNGNKKDNFWMMGETGPCGPCSELHVD---LTPAGDTKGALVNKGTAE----CIE 235 Query: 200 IWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ----------EKTNNYDIDLF 249 IWNLVF+QF LP +DTGMG ER+++++Q K +NY+ D+F Sbjct: 236 IWNLVFIQFNANPDGTFSPLPAKHVDTGMGFERVSSIIQGTKDFTDFANAKISNYETDIF 295 Query: 250 KHLIQASEQVTGMKY---------EGNNI---------VNHRVIVDHLRSSSFLIADGIL 291 + + E+ G +Y +G I V RVI DH+R+ SF IADGI Sbjct: 296 RPIFDEIEKQCGKRYTSTLPQPNAQGQIIPESEQEKVDVAFRVIADHIRTLSFAIADGIQ 355 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N R YVLRRI+RRA+ Y R LG+TEP L+ L MG +PE+ + +EE L Sbjct: 356 PGNTDRNYVLRRILRRAVRYGRTLGFTEPFFYKLVGVLARTMGDVFPEIRAKQKHVEEVL 415 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 + E+E F +TLD+G+ L ++ K + L+G AFKLYDT+G PLD+ + + RGL Sbjct: 416 KREEESFNRTLDKGIELFTSFVAS-EKQQQLSGTSAFKLYDTYGFPLDLTELMARERGLT 474 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 +DI F +E+QR RAR + + I S E T FIGYD Sbjct: 475 -VDIAGFEVEMEKQRKRAREAQV------RDVIELSEIETKTPTHFIGYD---------- 517 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 N + V+ ++ +V G+ V V+ + + YAE GGQ+GD+ Sbjct: 518 -------------HNHTGADVQEVL--------SVKGKTV-VIANNSVCYAEMGGQVGDS 555 Query: 532 GCAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G G G +I + QK H + E + + +D R + +H+ T Sbjct: 556 GEMTGHGGNSWRIANTQKSGNTWL--HFLEEADGPAVGDHVTIQLDGARRGAIQRHHTVT 613 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLLH AL ++ +Q GS + PD L FD +S +T +++ IE VN+ I +N V Sbjct: 614 HLLHWALHEVVSKEATQKGSFVGPDKLTFDF-NSAALTPVQVRDIERLVNERIVENGSVS 672 Query: 651 TRIMNREDAIASG-AAALLGTKYNDRVRVVSVEYE----DGGVHSSALCGGTHVSSTGEI 705 M + G G KY + VRVV + + DG +S LC GTH +TGEI Sbjct: 673 WIEMPYAEVRGRGDIMQFFGDKYGETVRVVQIGGQATKLDG--YSMELCAGTHTRATGEI 730 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 L I +ES+I AG+RRIEA G A ++L +LA+ + + R+E + Sbjct: 731 GLFRINAESAIAAGVRRIEAAAGLNAYDLANADTQRLHALATKVGSPLPELEKRIEGLLA 790 Query: 766 EYRKLQ---LIHAKRKLQLNVEDLSCHKIADVNFMSHIISEV---DSKELKSVMDALQKK 819 + ++L+ +R+ +DL + A +N II+ + D L++V DAL+ Sbjct: 791 QQKELEKALKAAQQREAAGRAKDLLANA-ATINGTPAIIANLGAADGDTLQTVADALKSN 849 Query: 820 IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 G+ +L G + +++ V+ D + A + + A ++ GG GGG+P A+ GG Sbjct: 850 GFKGVTVLGGTAN-GAVALVAAVSPDFTAKVQAGKIIQTIAPLV-GGKGGGKPEGARGGG 907 Query: 880 PNGNKADQAIAGVASFL 896 + +K ++A+A + L Sbjct: 908 KDPSKLEEALAQAKALL 924 >gi|126305114|ref|XP_001362507.1| PREDICTED: similar to Alanyl-tRNA synthetase [Monodelphis domestica] Length = 968 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 297/790 (37%), Positives = 429/790 (54%), Gaps = 64/790 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 7 ASEIRRRFIDFFKRNQHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPAHPMAKL 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF Sbjct: 67 NRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + RLY+T + + D E ++W+ + GL KI+ DNFW M +TGPCG Sbjct: 127 GIPVDRLYVTYFGGNEAAGLEPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 PCSEI +D+ G+ L +++ +EIWNLVF+QF ++ LPK SIDTGMG Sbjct: 186 PCSEIHYDRIGDRDAAHL--VNQDDPNVLEIWNLVFIQFNREADGSLKPLPKKSIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLR 280 LER+ +VLQ K +NYD DLF +A ++ TG + Y G +++ + +RV+ DH R Sbjct: 244 LERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARQYTGCVGADDVDGIDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ Y+ L L+ + +G A+PE Sbjct: 304 TITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNAKRGFFATLVDVVVQSLGDAFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D Sbjct: 364 LKKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVD 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + I +GL +D+ F EE+R A+ S G G+G + I + Y + Sbjct: 424 LTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDHIMLDI---YAIEEL-- 473 Query: 460 YDLLRGSKFMKEDRKVLCQKPP---IDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 ++G + + K Q + N V++ VKA+ ++ V+E +GQ+ VV D Sbjct: 474 --RIKGLQVTDDSLKYNYQSDSSGTYEFENPVAT-VKALRREKMFVDEVSTGQECGVVLD 530 Query: 517 QTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 +T FYAE GGQ+ D G + D + D Q + G +V H G LR Sbjct: 531 KTCFYAEQGGQIYDEGYLVKEDDSSEDKTEFTVKDAQVR--GGYVLHIGTVYGSLRVGDR 588 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ Sbjct: 589 VRLYIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQ 647 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-------- 681 +L+ E N +IA PV + A A G A+ Y D VRVVS+ Sbjct: 648 QLRETETIANGMIAAAKPVYAQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGIPVAKLL 707 Query: 682 ---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 G + S CGGTH+ ++ L IVSE +I GIRR+ A+TG A+ L Sbjct: 708 DDPSGPAGSLTSVEFCGGTHLQNSSHAGALVIVSEEAIAKGIRRVVAVTGVEAQKALRKA 767 Query: 739 DEKLKSLASF 748 D SL+ Sbjct: 768 DSLKSSLSEL 777 >gi|320581101|gb|EFW95323.1| Cytoplasmic alanyl-tRNA synthetase [Pichia angusta DL-1] Length = 954 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 324/985 (32%), Positives = 503/985 (51%), Gaps = 133/985 (13%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57 + +R TFL++F+ GH + SSS+IP +DPTL+F N+GM +K IF G P + Sbjct: 7 ATKVRNTFLDYFKDRGHTFVSSSSVIPHDDPTLLFANAGMNQYKPIFLGTVDPSSSFASL 66 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 +AV + QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AIQ +WDLLT Sbjct: 67 KRAVNS-QKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIQYSWDLLTNV 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L++ RLY+T ++ D EA + WK + G++ D I+ DNFW M + GPC Sbjct: 126 YGLNKDRLYVTYFEGDAANGLEPDLEAKQYWKDV-GVADDHILPGNAKDNFWEMGDQGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG +S ++ +EIWN VF+QF ++ LP +DT Sbjct: 185 GPCSEIHYDR----IGGRNAASLVNQDDPDVLEIWNNVFIQFNREQDGSLKPLPAKHVDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVD 277 GMG ER+ +VLQ +NYD D+F+ L +++TG++ Y G + I +RV+ D Sbjct: 241 GMGFERLVSVLQNVRSNYDTDVFQPLFSKIQEITGVRPYSGKFGKDDLDGIDTAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGS 335 H+R+ +F +ADG +P NEGRGYVLRRI+RR Y R + Y L P L ++ Sbjct: 301 HVRTLTFALADGGVPNNEGRGYVLRRILRRGARYVRKYMNYPIGKFFSQLAPTLIEQVKD 360 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDT 393 +PE+ I E L E+ F +TLDRG L + +++ ++ L G ++LYDT Sbjct: 361 IFPEVATNTDTIFEILDEEEASFARTLDRGEKLFEQYAIIASKTPEQTLAGRDVWRLYDT 420 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G P+D+ + + GL ID EE +AR SL K Sbjct: 421 YGFPVDLTRLMAEEAGL-NID--------EEGFEKARLASLEASKAGGSK---------- 461 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLC---QKPPIDLTN--------GVSSIVKAIVQQGEIV 502 G +K D +L I +T+ + + + I E++ Sbjct: 462 ----------SGKTLLKLDVHILGALDSNKDIPVTDDSYKYGNQDIKTKIVGIYNGKELL 511 Query: 503 ---EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHA 558 E +GQ++ V+ ++TPFYAE GGQ DTG + DG+ ++ +VQ A G +H Sbjct: 512 GSTEGTEAGQQLGVLLEKTPFYAEQGGQEYDTGKIVIDGVAEFEVENVQSYA-GYVLHTG 570 Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 V G ++ D R + NH+ TH+L+ AL ILG V Q GS + + LR Sbjct: 571 HVVEGKFSVGDQVIAGYDELRRWPIRNNHTGTHILNLALREILGDGVDQKGSLVAAEKLR 630 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRV 676 FD ++ +T +L+ IE N II ++PV ++ +N +I G A+ G Y D V Sbjct: 631 FDFSNKAAVTLEQLEKIEAICNKIIKDSMPVYSKPVALNVAKSI-YGLRAVFGETYPDPV 689 Query: 677 RVVSV--------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 RVVS+ E+ D +S CGGTHV+ T +I L IV ES I GIRR Sbjct: 690 RVVSIGVPVEELLAKPDNKEWYD---YSVEFCGGTHVAKTSDIKELVIVEESGIAKGIRR 746 Query: 723 IEAITG------QRARSHLMGQ-------------DEKLK---------SLASFLKVSQG 754 I A+TG QR Q ++KLK S++ K Sbjct: 747 IVAVTGTEAHEVQRIAKEFDEQLDAIEKMPFGEAKEKKLKETSTKLGQLSISVLQKAQLK 806 Query: 755 NVVGRVEE-IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVM 813 + ++++ + +E + Q K+ L E + H+ A + HI ++K + + Sbjct: 807 DKFAKIDKAVKDEVKARQKADTKKALDAVKEFFAEHEDAPF-LVKHIDISANAKIITETI 865 Query: 814 DALQKK-IQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRP 872 + ++K+ + + ++ G + + + + ++++ L + A ++A ++A + GG GG+ Sbjct: 866 NMIKKENKEKSLFLITGQKDDARVAQGVYISDEHLGKVQATEVANVAASYI-GGKAGGKG 924 Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897 ++ Q G + D+AI+ V L+ Sbjct: 925 NVCQGMGTEAAQIDKAISAVEKLLE 949 >gi|313837754|gb|EFS75468.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA2] gi|314927365|gb|EFS91196.1| alanyl-tRNA synthetase [Propionibacterium acnes HL044PA1] gi|314972691|gb|EFT16788.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA3] gi|328907450|gb|EGG27216.1| alanine--tRNA ligase [Propionibacterium sp. P08] Length = 892 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 303/866 (34%), Positives = 461/866 (53%), Gaps = 70/866 (8%) Query: 11 FLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRA 70 F++FF GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T++QKCVR Sbjct: 10 FVDFFAGKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATSIQKCVRT 68 Query: 71 GGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LDQRRL 125 D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK D D + Sbjct: 69 ----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKSEAIQYAWELVTKPADQGGLGFDPSSI 124 Query: 126 YITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 ++TV Y E D EA + W+ +G+ I + DN+W M GP GPCSEI+ Sbjct: 125 WVTVLGPGFHPDYPEGDIEAREAWRA-AGVPDGHIQGRSLKDNYWHMGVPGPGGPCSEIY 183 Query: 177 FDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKMSIDTGMG 229 D+G P G P + E+ RY+EIWNLVF ++ F L ++IDTG G Sbjct: 184 IDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSLNIDTGAG 241 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIA 287 LER+A +LQ N Y+ D +I + +++G +Y N + + RV+ DH+RS L+ Sbjct: 242 LERIAYLLQGVDNMYETDQVFPVIAKASEMSGKRYGANHDDDIRLRVVADHVRSGLMLMT 301 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P NE RGYVLRR++RR + RLLG +P++ LLP M ++P+++ + Sbjct: 302 DGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPDVLTEWDRV 361 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+E F +TL G +LD + + + + L+G+ AF+L+DT+G P+D+ ++ Sbjct: 362 ISAATAEEETFRRTLSAGTAMLDAAVIDTKVSGSKTLSGEKAFQLHDTYGFPIDLTLEMA 421 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 +GL +D F + EQR+RA+A S T+ ++ G T F+GY Sbjct: 422 AEQGLE-VDRDKFTALMAEQRARAKADSKTKKGLLTDPEAYAQIRALGETPFLGY----- 475 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 DLT V++ V I+ G V A G VEVV +TPFYAE G Sbjct: 476 ----------------TDLT--VNTTVTGIIANGTSVTAAGPGSVVEVVLAETPFYAEMG 517 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSI 585 GQ D+G +G L++ DVQ+ G+ VH ++ G L + ++ R Sbjct: 518 GQDSDSGIIRANGFDLEVLDVQRPVPGLIVHKVHLD-GDLAVGDQVTAVVNPTTRFGACQ 576 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 H+ATH++H AL I+G +Q GS P LRFD + +K ++ + IE+ N I Sbjct: 577 AHTATHVIHAALREIVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEERCNVAIHD 636 Query: 646 NLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEI 705 + V M EDA A GA A+ G KY VRVV E G S LCGGTHV+STG I Sbjct: 637 DFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTHVASTGRI 692 Query: 706 MLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE 765 +L ++ E S+ +G RR+EA+ A H+ + + L LKV + RV ++ Sbjct: 693 GMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERTLVNELTGILKVQPDQLADRVSKLVT 752 Query: 766 EYRKLQ--LIHAK-RKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 + + + L A+ R+L V+D+ +F++ + V +L+++ ++ ++ Sbjct: 753 DLKDAERKLAAARTRELMSQVDDIVAGATSAGSFDFIAAKVPGVVGNDLRTLASEVRGRV 812 Query: 821 Q--SGIIMLVGISKEKKASVLIVVTE 844 + ++ L+G + +K A +++ TE Sbjct: 813 KDRPAVVTLIGGTDDKPA-MIVAATE 837 >gi|115481322|ref|NP_001064254.1| Os10g0182000 [Oryza sativa Japonica Group] gi|110288715|gb|ABG65948.1| Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|113638863|dbj|BAF26168.1| Os10g0182000 [Oryza sativa Japonica Group] gi|215694746|dbj|BAG89937.1| unnamed protein product [Oryza sativa Japonica Group] Length = 999 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 294/773 (38%), Positives = 405/773 (52%), Gaps = 72/773 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57 S +R TF+ FF+ H PSS ++P +DPTL+F N+GM FK +F G P + Sbjct: 55 ASRVRETFISFFESKSHTRWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTAAPDAPLGRL 114 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 +A T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLT+ Sbjct: 115 RRACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGFAWELLTQV 173 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L R+Y T + DE E+ +W K L +K++ DNFW M +TGPC Sbjct: 174 YKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPKEKVLPFGCKDNFWEMGDTGPC 231 Query: 170 GPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 GPC+EI FD+ G L + + IEIWNLVF+QF ++ LP +DTGM Sbjct: 232 GPCTEIHFDRVGNRDAASL--VNNDDPTCIEIWNLVFIQFNREADCTLRPLPAKHVDTGM 289 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEGN------NIVN--HRVIVD 277 G ER+ ++LQ K +NYD D+F + A Q+ G Y G + V+ +RV+ D Sbjct: 290 GFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSYSGKVGPEDVDKVDMAYRVVAD 349 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H+R+ SF IADG P NEGR YVLRRI+RRA+ + + L + L+ MG Sbjct: 350 HIRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVHVFVQLMGDV 409 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLL----DGVLSHLGKDEILNGDVAFKLYD 392 +PEL + I++ ++ E+E F TL +G D V G +L+G AF L+D Sbjct: 410 FPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADAVKESGGT--VLSGQDAFVLWD 467 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+D+ + + GL+ +D F+ A+EE R +AR G S+ Sbjct: 468 TYGYPVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARNARFKAGEN-------SIVLDA 519 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 AT LR D P + S+VKAI E V A + Sbjct: 520 NATA-----QLRNQGLASTD-----DSPKYGYKDN-DSVVKAIYTGSEYVSAASGDEDFG 568 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMS 570 +V + T FYAE GGQ+ DTG G +T+VQ A G +H +G L Sbjct: 569 LVLESTSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFA-GYVLHMGSFTKGSKALSVGDK 627 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + +DY R ++ NH+ TH+L+ AL ILG HV Q GS + P+ LRFD +H KP+ Sbjct: 628 VACKVDYARRALIAPNHTCTHMLNFALREILGDHVDQKGSIVLPEKLRFDFSHGKPVQPE 687 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV-------- 681 +L+ IE VN I L V R + DA +G A+ G Y D VRVVSV Sbjct: 688 DLRKIESIVNQQIKDKLEVFAREIKLADAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLL 747 Query: 682 ---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E ++ S+ LCGGTH+ +T E ++SE I G+RRI A+T + A Sbjct: 748 ANPESKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIAKGVRRITAVTAKHA 800 >gi|282853869|ref|ZP_06263206.1| alanine--tRNA ligase [Propionibacterium acnes J139] gi|282583322|gb|EFB88702.1| alanine--tRNA ligase [Propionibacterium acnes J139] gi|314923563|gb|EFS87394.1| alanyl-tRNA synthetase [Propionibacterium acnes HL001PA1] gi|315092198|gb|EFT64174.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA4] gi|315103610|gb|EFT75586.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA2] gi|327327432|gb|EGE69208.1| alanine--tRNA ligase [Propionibacterium acnes HL103PA1] Length = 892 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 315/926 (34%), Positives = 480/926 (51%), Gaps = 72/926 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LLP M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD V + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VEVV +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGASVSAAEPGAVVEVVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPT 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G KY VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 746 RVSKLATDLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|320169841|gb|EFW46740.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864] Length = 992 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 310/889 (34%), Positives = 454/889 (51%), Gaps = 110/889 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF---TGQEKPVYQAVTT 63 IR F+++F GHE + SSSL+P NDPTL+F N+GMV FK+ F + + Sbjct: 88 IRRDFVQYFVDRGHEHVKSSSLVPQNDPTLLFVNAGMVQFKDRFLHPRASSSGRLTSAVS 147 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 VQKC+RAGGKHNDL NVG T RHHTFFEMLGNFSFGGYFKE AI LAWD LT L + Sbjct: 148 VQKCMRAGGKHNDLTNVGYTPRHHTFFEMLGNFSFGGYFKETAIPLAWDYLTAHLQLPKD 207 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE-TGPCGPCSEIFFDQGEC 182 RL ITVY+ D+E++ +W+ G+ +I R+ DN+WSM + GPCGPC+EI FD Sbjct: 208 RLMITVYETDDESYAIWRDKIGVPESRIWRLGAADNYWSMGDGPGPCGPCTEIHFD---- 263 Query: 183 IPGGLPGSSEEGERYIEIWNLVFMQFEQ----QNKQERFILPKMSIDTGMGLERMATVLQ 238 + GL + + ERY+EIWN+VFMQ ++ + L IDTGMGLER+A VLQ Sbjct: 264 LQNGL--DARDPERYMEIWNVVFMQEQKVASSSGQLSLAPLETKCIDTGMGLERLARVLQ 321 Query: 239 EKTNNYDIDLFKHLIQASEQVTG--------MKYEGNNIVNHRVIVDHLRSSSFLIADGI 290 K +N++ID L A+ + +N ++ DH+R++SFLIADG+ Sbjct: 322 GKASNFEIDSLASLTAATAAAASAASQASGQLATPPTAFLN--IVADHVRAASFLIADGV 379 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA-YPELIQAKLLIEE 349 +P+N GRGYVLRR++RRA +G +P + L+P L YPE+ + I Sbjct: 380 IPSNLGRGYVLRRVIRRAAGVGLQMGLKKPFLADLVPVLLASTDPTFYPEIFARQTEICA 439 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 L+ E+E F L G+ +L+ + K +L F+L+++HG P+D+ + I Sbjct: 440 ILKQEEEVFSSALHSGVSMLNSEIDAAVQRKQAVLAPATVFRLHESHGFPIDLARIISTQ 499 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 RG++ D + Q + + R R S GS + LL + Sbjct: 500 RGVS-FDEQAIEQMVVDNREMTRQRSRATGSAAS--------------------LLTNAN 538 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 +E + + +AIV + E S K+ VV DQ+P Y E GGQ Sbjct: 539 SKQE----------------TTQLKEAIV--SSMSESRDSKVKLAVV-DQSPLYPEGGGQ 579 Query: 528 LGDTGCAI------------------GDGIRLQITDVQKKAEGI-FVHHAIVERGILRTE 568 +G+TG + GD I ++I +G F A + LR+ Sbjct: 580 VGETGDVLSSDGSTLLGVVETTSKPAGDFITIRIRPADSDVDGTAFDSIAAGGKIQLRSH 639 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 SL R +S +H+A H+L+ AL + G+ V Q GS +T LRFD TH ++ Sbjct: 640 ASL--------RHVISAHHTAVHMLNAALRKMFGTTVVQAGSLVTSQRLRFDFTHKAALS 691 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGV 688 A+++ +E VN I LPV T ++ +A GA ++L Y++ VRVV + G Sbjct: 692 DAQVEQLEAAVNGIAQSRLPVQTEVLPLAEAQRRGAISMLNETYSENVRVVKI-----GD 746 Query: 689 HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASF 748 S LCGGTH S++ + IV++SS+ AG RRIEA+ G+ A + L GQ + L +A Sbjct: 747 VSMELCGGTHASNSHSVFPFKIVAQSSVAAGTRRIEAVAGETAITWLAGQQQVLGRIART 806 Query: 749 LKVSQGNVV-----GRVEEIWEEYRKLQLIHAKRKLQL--NVEDLS-CHKIADVNFMSHI 800 LKV G V V+ + ++ + + KR ++LS +AD +S Sbjct: 807 LKVEPGPGVEDALNALVQRLKDQTKAIDAAMVKRASSPWNEAQELSGLLAVADTTAVSVS 866 Query: 801 ISEVDSKELKSVMDALQKKIQSGI---IMLVGISKEKKASVLIVVTEDL 846 VDS E S + +++ + + ++ V I + +V I L Sbjct: 867 FRMVDSSEPSSFANVRAERLANALQPTVVHVVIGSDNSMAVAIPAAPQL 915 >gi|197099554|ref|NP_001125391.1| alanyl-tRNA synthetase, cytoplasmic [Pongo abelii] gi|75042108|sp|Q5RC02|SYAC_PONAB RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|55727911|emb|CAH90708.1| hypothetical protein [Pongo abelii] Length = 968 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 297/798 (37%), Positives = 431/798 (54%), Gaps = 66/798 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASKIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 PSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + +ADG P N GRGYVLRRI+RRA+ YA L + L+ + +G A Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ I +GL +D+ F EE+R A+ S G G+G + I + Y + Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 DL K + + + N V++++ A+ ++ VEE +GQ+ VV D Sbjct: 473 LRARDLEVTDDSPKYNYHLDSSGSYV-FENTVATVM-ALRREKMFVEEVSTGQECGVVLD 530 Query: 517 QTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 +T FYAE GGQ+ D G + D + + Q + G +V H G L+ Sbjct: 531 KTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKVGDQ 588 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ Sbjct: 589 VWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQ 647 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----EYE 684 ++K E+ N++I PV T+ + A A G A+ Y D VRVVS+ E Sbjct: 648 QIKKAEEIANEMIEAAKPVYTQDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELL 707 Query: 685 D------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L Sbjct: 708 DDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL--- 764 Query: 739 DEKLKSLASFLKVSQGNV 756 K SL L V + V Sbjct: 765 -RKAGSLKKPLSVMEAKV 781 >gi|193656980|ref|XP_001950431.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Acyrthosiphon pisum] Length = 955 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 324/957 (33%), Positives = 490/957 (51%), Gaps = 81/957 (8%) Query: 1 MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-- 57 + + IR +++FF K GHE + SSS++P +DPTL+F N+GM FK IF G P Sbjct: 2 VPSAKEIRDRYIKFFIDKKGHEYVYSSSVVPVDDPTLLFANAGMNQFKPIFLGTVAPSSD 61 Query: 58 ---YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114 ++ QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK Q AW+ L Sbjct: 62 MAKWKRAVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKTEICQWAWEFL 121 Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166 T+EF L RLY+T + + D E +W K+ GL+ D II DNFW M ET Sbjct: 122 TQEFKLSPDRLYVTYFGGDKKSGLEPDLECKNIWLKL-GLAEDHIIPGNMKDNFWEMGET 180 Query: 167 GPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 GPCGPCSEI +D+ G + L +++ +EIWNLVFMQ+ + + LPK ID Sbjct: 181 GPCGPCSEIHYDRIGNRLAADL--VNQDDPDVLEIWNLVFMQYNRNQEGTLHNLPKKHID 238 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGN--------NIVNHRVIV 276 GMG ER+ +V+Q+K +NYD DLF+ L A + T YEG + +RV+ Sbjct: 239 CGMGFERLVSVIQDKRSNYDTDLFQPLFVAIQNGTNAPPYEGKVGADDIDQKDMAYRVLA 298 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGS 335 DH R+ + ++DG P N GRGYVLRRI+RRA+ YA +P L+ + +G Sbjct: 299 DHARTLTIALSDGGSPDNTGRGYVLRRILRRAVRYATEKLNGKPGFFATLVNVVVDLLGD 358 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 +PE+ + I E + E+E+F +TL RG LL+ + L D+++ G+VA+KLYDT+G Sbjct: 359 TFPEITKDPQQIIEIINEEEEQFLRTLSRGRNLLNRTILKL-TDKVIPGEVAWKLYDTYG 417 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ ++ +G ID+ +A EE + +A+ S G E I + Sbjct: 418 FPVDLTYLMVEEKGFT-IDM----EAYEEAKKKAQLISQNKVGGDKEVISLDV-HALADL 471 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLT-NGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 Q G S K + K + + T +S V +I + V E + Q+ ++ Sbjct: 472 QTKGISTTDDSP--KYNYKAVSDDADAEYTFETCTSTVLSIRLINQFVNEVDTFQECGII 529 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+T FYAE GGQ+ D G + D + +VQ + G +H I+E G L+ +VL Sbjct: 530 LDKTCFYAEQGGQIYDQGSMVKDEFTEFYVNNVQLRG-GYILHVGILESGSLKVGDKVVL 588 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ID + RR + NH+ATH L+H L +LG +++Q GS + PD LRFD + +T ++ Sbjct: 589 KIDEKRRRFVMNNHTATHTLNHTLRVVLGDNLNQKGSLVAPDKLRFDFNNKAALTGDQVA 648 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRV----------RVVSVE 682 +E N++I +N V +I DA G A+ Y D V ++++ Sbjct: 649 KVEKLTNEVIKRNDTVYAKIAPLNDAKRIKGLRAMFDETYPDPVRVVSVGVTVDKLLTDP 708 Query: 683 YEDGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---------- 731 + G+ +S CGGTH+ TG + I+SE +I GIRRI A+TG A Sbjct: 709 EGNSGLETSVEFCGGTHLHKTGHMECFTILSEEAISKGIRRIVAVTGPEATKAYNRGEEL 768 Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW-----------------EEYRKLQLIH 774 + +M D K +L+ + +Q + V W EE RK QL+ Sbjct: 769 KKDVMKLDSKDVNLSKAIIDTQDKINKSVIPYWVKEELRSVLSGLKKGIAEEERK-QLVA 827 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE- 833 ++ +++ C + F+ + ++K + +V+ L+ + + IML+ E Sbjct: 828 QASEVAKSIKTKICSESDKTVFIYKLDVGSNTKVMDAVLKLLKADMPNISIMLLSEDTEG 887 Query: 834 KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K+ VV++DL + + G GGG+ AQ+ G N +Q I+ Sbjct: 888 KRIYCQCVVSKDLNKKGLMANKWVTKIASCINGKGGGKADTAQASGCNETGVEQLIS 944 >gi|301115782|ref|XP_002905620.1| alanyl-tRNA synthetase, putative [Phytophthora infestans T30-4] gi|262110409|gb|EEY68461.1| alanyl-tRNA synthetase, putative [Phytophthora infestans T30-4] Length = 897 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 300/802 (37%), Positives = 434/802 (54%), Gaps = 91/802 (11%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCN-DPTLMFTNSGMVPFKNIFTGQEKPV----YQ 59 + +R+ FL+FF+ GH ++PS+SL+P D +L+F N+GMVPFK F G + Y Sbjct: 25 TELRSRFLQFFESQGHRVVPSASLVPPGGDQSLLFVNAGMVPFKQAFLGIDGGAKARGYS 84 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 T+ Q+CVRAGGKHNDLD VG T RHHT FEMLGNFSFG YFKE+AI + W LT+E + Sbjct: 85 RATSAQRCVRAGGKHNDLDQVGLTRRHHTMFEMLGNFSFGDYFKEQAITMCWRFLTQELE 144 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 L RL++TV D+EA +LWK+I+GL KI + +DNFW+M ++GPCGPCSE+F+D Sbjct: 145 LPIDRLHVTVLKSDQEARRLWKQIAGLPDHKIQELDEHDNFWAMGDSGPCGPCSEVFWDL 204 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQF-EQQNKQERFILPKMSIDTGMGLERMATVLQ 238 G+ I ++ ER++E+WNLVFMQF + E LP S+DTGMGLER+A+VLQ Sbjct: 205 GDHI-------ADPDERFLELWNLVFMQFFRNEGDSELHALPNCSVDTGMGLERVASVLQ 257 Query: 239 EKTNNYDIDLFKHLIQASEQV--------------TGMKYE----------GNNIVNHRV 274 +NY D+F L+ V + ++ E G I R+ Sbjct: 258 GVPSNYHTDVFVPLLTEVATVLDANRSSTLRQSFTSALQEELDPRKNLFGTGKEIQTLRI 317 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMG 334 + DHLR++ L+ DG+ P+N GRGYVLRRI+RRA+ +A+ LG +L ++ Sbjct: 318 VSDHLRATYALLQDGVFPSNIGRGYVLRRIIRRAIRHAQQLGVRSG-SDGILASIAVPGW 376 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394 S L Q + ++ +E+ F + L G ++ S +L+G AF+LYDT Sbjct: 377 SEAAGLQQMRAIVA----NEERAFEEMLRNGRGAIEKAFSK--TQVMLSGADAFRLYDTF 430 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G+PLDI Q + +GL+ +D ++ + + + S+ ++E+ S Sbjct: 431 GIPLDITQVLAEEKGLS-VDTEGYDACRKSHKQQTSDRSVFHTQASSEQS-SSTPAATVV 488 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 ++F+GY+ L SK +VL D +G S V+ Sbjct: 489 SEFVGYEQLSVSK-----ARVL------DCWSGSGSA------------------GFSVI 519 Query: 515 FDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKA----EGIFVHHAIVERGILRTEM 569 D+ PFY E GGQ+GD G I D I ++ T + +F++ A VE Sbjct: 520 LDRCPFYPEGGGQVGDRGHLINEDAIAIKCTLPKDTTFEDISALFLNEATVE-------- 571 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 +D + R +++H+ATHLL AL LG HV+Q GS +T D LRFD H +++ Sbjct: 572 ---AHVDRRFRSGCAVHHTATHLLQRALKAELGEHVTQAGSQVTSDRLRFDFAHFGALSA 628 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVH 689 E+ S+E VN A L V T + REDA SGA G KY D VRVV V E Sbjct: 629 DEMASVEARVNAFAAAELDVSTVELPREDAERSGAICNFGDKYGDVVRVVRVGGEAETPV 688 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL 749 SS CGGTHV++ EI +VSE S+ AG RR+EA+ G +L + + L +A L Sbjct: 689 SSEFCGGTHVNNVREIFPFAMVSEGSVAAGTRRVEAVAGHAGARYLQAKAQTLSDVADQL 748 Query: 750 KVSQGNVVGRVEEIWEEYRKLQ 771 + VV RV ++ ++ ++L+ Sbjct: 749 STTPAKVVERVAKMHKQMKQLE 770 >gi|262341353|ref|YP_003284208.1| alanine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272690|gb|ACY40598.1| alanine-tRNA ligase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 887 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 302/861 (35%), Positives = 469/861 (54%), Gaps = 75/861 (8%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 SIR TFL FF+K H+++PS + NDP+L F N+GM PFK+ F G +P Y + VQ Sbjct: 5 SIRDTFLGFFKKKEHKVIPSFPIHSKNDPSLFFINAGMNPFKDYFLGHIQPDYSRIVNVQ 64 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 KC+R GKHNDL++VG N HHT FEMLGN+SFG Y ++ I+ AW+LL + +++ ++ + Sbjct: 65 KCLRVTGKHNDLEHVGYDNYHHTMFEMLGNWSFGDYSRKETIEWAWELLIQVYNIPKKNI 124 Query: 126 YITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 YI+V+ D E FK WK + +S + I+ +NFW M TGPCGPCSEI Sbjct: 125 YISVFIGDKKEGLSMDYETFKYWKTL--ISEENILFFGKKENFWEMGLTGPCGPCSEIHI 182 Query: 178 D-QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 D + E L G +++ + IEIWNLVF++F +++ + L K +DTGMGLER+ Sbjct: 183 DLRNEKEKQMLSGKHLVNKKHPKVIEIWNLVFIEFLRKSDGKLEKLTKKHVDTGMGLERL 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGIL 291 +LQEK ++Y+ D+F +IQ ++ G Y+ + V+ +I DHLR+ F I+DG+ Sbjct: 243 CMILQEKFSSYETDIFFPIIQNIKESLGKIYKEDFHQKVSIHIIADHLRAIVFSISDGVF 302 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N G GYV+RRI+RRA+ YA R L EP + + +L EM S +PEL++ K I+ Sbjct: 303 PSNNGAGYVIRRILRRAIIYATRFLYKKEPFIYQFVDSLVKEMKSYFPELMEKKEYIKNV 362 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 ++ E+ F K +++G + ++ K ++I++G FKLYDT+G P+ + +L + Sbjct: 363 IQEEELSFLKVIEKGNHKIQYIIEKAKKQNEKIIDGTTIFKLYDTYGYPIK-LSKMLVEK 421 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK---YGATQFIGYDLLRG 465 ID F++ L EQ++R++ + + +K W + + F+GYD+++ Sbjct: 422 NNLLIDEKLFHEKLLEQKNRSKKENHTI----EKKDWIEVHNHQFIHENVNFVGYDMIKC 477 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 + + RKV N + E+VF +TPFY E G Sbjct: 478 DVLILKYRKV---------ENKLE-----------------KTHYYELVFSKTPFYPEGG 511 Query: 526 GQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR-QLS 584 GQLGDTG + + I + KK I +H A + + S I +NRR ++ Sbjct: 512 GQLGDTGFIKNETDEVYIFNT-KKENSIIIHSA---KKLPSDVFSSFKAIVDKNRRLEIE 567 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NH++THLLH +L ILG+H+ Q GS + D LRFD +H + IT EL IE+ V ++I Sbjct: 568 KNHTSTHLLHFSLKKILGNHIQQKGSYVGEDYLRFDFSHYQKITVEELYKIENLVQELIF 627 Query: 645 QNLPV----VTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVS 700 +L + + + E I+ + KY VRV++ SS LC GTHV Sbjct: 628 SDLILEEKRFSSLQEAEKNISFYKSETFENKYKQEVRVITFG------KSSELCIGTHVK 681 Query: 701 STGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRV 760 TG I + I+SESSI GIRRI+AIT ++A +L ++ +S +K + + Sbjct: 682 HTGLIQIFKIISESSISYGIRRIKAITSKKAVQYLKSIHDQYQSFKKMMKYPESPFKSFL 741 Query: 761 ---EEIWEEYRKLQLIHAKRKLQLNVE-DLSCHKIADVNFMSHI--ISEVDSKELKSVMD 814 +E E +K+ I ++ + L E L + + +N++ I E D +K ++ Sbjct: 742 ILQKENQELKKKISEIRLQQMITLKKEYSLKAIQFSSINYICDIDLSKEKDINLIKKIVL 801 Query: 815 ALQKKIQSGIIMLVGISKEKK 835 L+ +I S + M+VG KE K Sbjct: 802 DLRNEI-SNLFMIVGFIKENK 821 >gi|302681375|ref|XP_003030369.1| hypothetical protein SCHCODRAFT_82606 [Schizophyllum commune H4-8] gi|300104060|gb|EFI95466.1| hypothetical protein SCHCODRAFT_82606 [Schizophyllum commune H4-8] Length = 949 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 290/774 (37%), Positives = 419/774 (54%), Gaps = 77/774 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R F ++FQ GH + SS +P +DPTL+F N+GM FK +F G P + Sbjct: 12 VRQDFFDYFQSKGHTFVRSSPTVPYDDPTLLFANAGMNQFKPLFLGTVDPHSDLSKLKRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W+LLT+ + L Sbjct: 72 YNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAYSWELLTEVYKLP 131 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY++ ++ D EA + W I G+ D I+ DNFW M TGPCGPCS Sbjct: 132 KDRLYVSYFEGDPKNGLEPDLEAKQYWLDI-GVPEDHILPGNAKDNFWEMGATGPCGPCS 190 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+QF +++ LP +DTGMG Sbjct: 191 EIHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQFNREDDGSLKPLPSKHVDTGMGF 246 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ +V+Q+K +NYD D+F + Q +++TG++ Y+G + I +RV+ DH+R+ Sbjct: 247 ERLVSVVQDKRSNYDTDVFSPIFQRVQELTGVRPYQGLFGPDDKDGIDTAYRVVADHVRT 306 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAYPE 339 +F ++DG +P N GRGYVLRRI+RR YAR LG T L+P + MG +PE Sbjct: 307 LTFALSDGGVPNNVGRGYVLRRILRRGARYARKKLGVTIGSFFSSLMPVVVEHMGDVFPE 366 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLP 397 + + I+E L E+E F +TLDRG L D + + LNG ++LYDT+G P Sbjct: 367 ITKKLPEIKEILDEEEESFARTLDRGEKLFDQYAKRAKEQNLKELNGKDVWRLYDTYGFP 426 Query: 398 LDIMQDILCARGLAGIDIISFN--QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 +D+ + GL GI+ F QA ++ S+A + K+ Sbjct: 427 VDLTTLMAEELGL-GINEKEFEDAQAWSKEASKATQN----------------KDAATVV 469 Query: 456 QFIGYD---LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV--KAIVQQGEIVEEAVSGQK 510 + +D L +G K D + ++T V I KA + + EA S Sbjct: 470 KLDVHDIAALEKGGDVAKTDDSSKYNQG--NITATVKKIFHNKAFLDSTSDIPEATS--- 524 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE+GGQ DTG + DG+ ++TDVQ G +H ++ G L Sbjct: 525 FGIILDRTNFYAESGGQENDTGGIVIDGVAEFEVTDVQ-VYNGYVLHVGHLKYGDLEVGN 583 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 +V + D R L NH+ATH+L++ L +LG H+ Q GS + P LRFD +H I Sbjct: 584 EVVASYDELRRWPLRNNHTATHILNYCLREVLGDHIDQKGSLVAPTKLRFDFSHKAQIPL 643 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY----- 683 EL IE D I +N+ V + M+ + A G A+ G Y D VRVVS+E+ Sbjct: 644 PELTQIESMSVDWIKKNVKVYGKDMDLKSAQKIPGLRAVFGETYPDPVRVVSLEFSVDEI 703 Query: 684 ----EDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ S+++ CGGTHV+ TG+I I ES I GIRRI A+TG A Sbjct: 704 SADIENPKWRSTSIEFCGGTHVAKTGDIKHFVITEESGIAKGIRRIVAVTGHEA 757 >gi|296129664|ref|YP_003636914.1| alanyl-tRNA synthetase [Cellulomonas flavigena DSM 20109] gi|296021479|gb|ADG74715.1| alanyl-tRNA synthetase [Cellulomonas flavigena DSM 20109] Length = 897 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 294/792 (37%), Positives = 441/792 (55%), Gaps = 60/792 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L++F H ++PS LI DP+++FT +GMVPF G + + V Sbjct: 3 TAEIRQRWLDYFASKDHAIVPSVPLI-SPDPSILFTIAGMVPFIPYILGTQDAPWPRVAN 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----F 118 QKC+R ND++NVGRT RH TFF+MLGNFSFG YFKE AI+LAW LT Sbjct: 62 AQKCIRT----NDIENVGRTTRHGTFFQMLGNFSFGDYFKEGAIELAWGFLTGAQESGGL 117 Query: 119 DLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 LD RL++T+++ED+EA ++ G+ ++R+T + FW + GP GPC+E +D Sbjct: 118 GLDGDRLWVTIWNEDDEAADALVRV-GVDPRHVVRLTREEIFWDTGQPGPAGPCAEWHYD 176 Query: 179 QG-ECIPGGLPGSSEEG-ERYIEIWNLVFMQF---EQQNKQERFI--LPKMSIDTGMGLE 231 +G E P + G+ + G +RY+EIWNLVF QF E + K + L + +IDTG GLE Sbjct: 177 RGPEFGPDAVGGTVDPGGDRYLEIWNLVFDQFVRGEGRGKDYPLLGELERKAIDTGAGLE 236 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADG 289 R+A +LQ K N Y+ D +I+ + +++G +Y G + V RV+ DH+RS+ LI DG Sbjct: 237 RIAYLLQGKNNLYETDEVFPVIERAAELSGRRYGASGEDDVRLRVVGDHVRSALMLIGDG 296 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P+NEGRGYVLRR++RRA+ RLLG + + LLP MG +YPE+++ I + Sbjct: 297 VTPSNEGRGYVLRRLVRRAVRSMRLLGVEDAALPELLPISRDLMGVSYPEVVRDFDRISQ 356 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDVAFKLYDTHGLPLDIMQDI 404 E++ F +TL G + +G +S G +L G+ AF L+DT+G P+D+ ++ Sbjct: 357 VAYGEEDAFLRTLTAGTTIFEGAVSKAKAGADGTGVVLTGEQAFALHDTYGFPIDLTLEM 416 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG-----TTEKIWFSLKEKYGAT-QFI 458 G+ +D +F ++ QR RARA +L +G T +++ +L + GA+ +F+ Sbjct: 417 AAEHGV-DVDEQAFRTLMQAQRDRARADALAKKTGHADTSTYQQLQQALSAENGASVRFV 475 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY D T ++ V ++ G A + V+VV D T Sbjct: 476 GY---------------------TDTT--AATKVVGLLVDGVPAPAATAPADVQVVLDVT 512 Query: 519 PFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 PFYAEAGGQL DTG ++ DG +++ DVQ +G+ VHH + G L + TID Sbjct: 513 PFYAEAGGQLADTGTISLADGAIVEVDDVQAPIKGLSVHHGRLVDGTLTLGDTGTATIDT 572 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 RR ++ H+ATH++H AL LG +Q GS P LRFD + + ++ L IE Sbjct: 573 ARRRAIARAHTATHMVHKALREELGDTATQAGSENAPSRLRFDFRSGQSVPASSLSQIEG 632 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 VN+ + +L V R M ++A A GA AL G KY + VRVVS+ GG S LC GT Sbjct: 633 RVNERLQDDLEVTDRTMAIDEARALGAMALFGEKYGNEVRVVSI----GGDWSRELCAGT 688 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV +GE+ L+ ++ ESSI +G+RR++A+ G A + + + L+ L + Sbjct: 689 HVRRSGELGLVTLLGESSIGSGVRRVDALVGDSAYGYQAKERALVSQLSGLLGARPDELG 748 Query: 758 GRVEEIWEEYRK 769 RV + R+ Sbjct: 749 ERVSSLLTRVRE 760 >gi|291519140|emb|CBK74361.1| alanyl-tRNA synthetase [Butyrivibrio fibrisolvens 16/4] Length = 795 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 307/815 (37%), Positives = 447/815 (54%), Gaps = 64/815 (7%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151 MLGNFSFG YFK AI +W+ LT+ LD RLY ++Y EDEEAF++W K G++ ++I Sbjct: 1 MLGNFSFGDYFKHEAIAWSWEFLTEVLKLDPNRLYPSIYGEDEEAFEIWTKEVGVAPERI 60 Query: 152 IRITTN------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE--EGERYIEIWNL 203 R + DNFW GPCGPCSEI++D+GE G P + +R++E+WN Sbjct: 61 TRFYRDPETGECDNFWEHG-AGPCGPCSEIYYDRGEKYGCGKPDCKVGCDCDRFMEVWNN 119 Query: 204 VFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK 263 VF QF L + +IDTGMGLER+A V+Q+ + +DID K + +++G K Sbjct: 120 VFTQFNGDGHGGYEELAQKNIDTGMGLERLAVVMQDVDSVFDIDTMKAIRDKICEMSGKK 179 Query: 264 YEGNNI--VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL 321 Y+ + + V+ R+I DH+RSS+FL++DG+ P+NEGRGYVLRR++RRA + R LG Sbjct: 180 YQVDALDDVSIRLITDHIRSSTFLVSDGVTPSNEGRGYVLRRLIRRAAKHGRALGIQGSF 239 Query: 322 MMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GK 378 M L + E YPEL + + I +TL +E+E+F KT+D+GL +L G+ L G Sbjct: 240 MAKLSETVINECKDGYPELWEKREFIFKTLTAEEEQFNKTIDKGLEILAGMEEKLVAAGS 299 Query: 379 DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-----HS 433 E L+G+ FKLYDT+G P+D+ +IL +G D F +EEQR +ARA + Sbjct: 300 KE-LSGEDTFKLYDTYGFPVDLTAEILEEKGFT-YDAAGFEACMEEQRQKARAARKETNY 357 Query: 434 LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK 493 +G + + I S+ ++F+GYD S V Sbjct: 358 MGADASVYDDIDLSV-----TSEFVGYD-----------------------NTTSESTVT 389 Query: 494 AIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI 553 + + EIV+ G ++ +TPFYA GGQ+GDTG + D K G Sbjct: 390 VLTTETEIVDTLAEGMIGTIIVPETPFYATMGGQIGDTGVISTANGEFTVKDTIKLKGGK 449 Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613 H + G+++ + LT+D + R ++ NHSATHL+ AL +LG+HV Q GS Sbjct: 450 IGHVGEMTSGMIKVGEKVTLTVDAERRARICKNHSATHLMQKALREVLGTHVEQKGSYQD 509 Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673 D RFD +H +TS E+ +E VND IA+ L V T IM+ ++A SGA AL G KY Sbjct: 510 ADRTRFDFSHFSAMTSEEIAKVEKMVNDKIAEGLAVTTAIMSIDEAKKSGAMALFGEKYG 569 Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 + VRVV + G S LCGGTHVS+T EI I+SES + AG RRIEAITGQ Sbjct: 570 ETVRVVKM-----GDFSVELCGGTHVSNTSEISAFKILSESGVAAGTRRIEAITGQAVFE 624 Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRV----EEIWEEYRKLQLIHAKRKLQLNVEDL--S 787 + + KL + A+ LK V ++ +++ E +L+ + AK Q V D+ S Sbjct: 625 YYADLEAKLNAAAAALKCKPSEVEEKIAHLQKQLKETNSELESLKAK-AAQAAVGDVMDS 683 Query: 788 CHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL 847 ++ V ++ ++ VD L+ + D L+ K+ G+I+L K V++ Sbjct: 684 VVEVKGVKLLATSVTGVDMNGLRDLGDDLKTKLGEGVIVLASDCDGKVNLVVMATDAAQA 743 Query: 848 DRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPN 881 +A +L + ++ KV GGGGGRP+MAQ+GG N Sbjct: 744 AGAHAGNLIKAIAPKVG--GGGGGRPNMAQAGGKN 776 >gi|149699352|ref|XP_001501062.1| PREDICTED: similar to LOC510933 protein [Equus caballus] Length = 968 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 299/808 (37%), Positives = 431/808 (53%), Gaps = 88/808 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 7 ASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF Sbjct: 67 SRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPCG Sbjct: 127 GIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDTG Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278 MGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYAGKVGADDADGIDMAYRVLADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 R+ + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+ Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAF 361 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + ++++ + E+ +F KTL RG +LD + LG+ + + GD A+ LYDT+G P Sbjct: 362 PELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGESKTIPGDTAWLLYDTYGFP 421 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS------LKEK 451 +D+ I +GL +D+ F EE+R A+ S G G+G + I L+EK Sbjct: 422 VDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDIYAIEELREK 476 Query: 452 -----YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 + ++ Y GS + + V A+ + VEE Sbjct: 477 GLEATDDSPKYNYYSDSSGSYVFE----------------SAVATVMALRRDKMFVEEVS 520 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIV 560 +GQ+ VV D+T FYAE GGQ+ D G + D + + Q + G +V H Sbjct: 521 TGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGT 578 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 G L+ + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD Sbjct: 579 IYGNLKVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFD 637 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679 T +++ ++K E+ N++I PV T+ + A A G A+ Y D VRVV Sbjct: 638 FTAKGAMSTQQIKKAEEIANEMIEAAKPVYTQDCSLAAAKAIQGLRAVFDETYPDPVRVV 697 Query: 680 SV-----EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 S+ E D G + S CGGTH+ ++ IVSE +I GIRRI A+TG Sbjct: 698 SIGVPVSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTG 757 Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNV 756 A+ L K +SL L V +G V Sbjct: 758 AEAQKAL----RKAESLKKSLSVMEGKV 781 >gi|75858922|ref|XP_868801.1| hypothetical protein AN9419.2 [Aspergillus nidulans FGSC A4] gi|40747680|gb|EAA66836.1| hypothetical protein AN9419.2 [Aspergillus nidulans FGSC A4] Length = 981 Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust. Identities = 291/791 (36%), Positives = 426/791 (53%), Gaps = 92/791 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R TFL++FQ GH + SS + P +DPTL+FTN+GM FK+IF G P + A Sbjct: 16 VRDTFLQYFQGKGHTFVASSPVAPLSDPTLLFTNAGMNQFKSIFLGTVNPNSDFAQLKSA 75 Query: 61 VTTVQ-KCVRAGGKHN------------------DLDNVGRTNRHHTFFEMLGNFSFGGY 101 V + + +C+RAGGKHN DLD+VG+ + HHTFFEMLGN+SFG Y Sbjct: 76 VNSQKMQCIRAGGKHNVGWHPVQAGQVFANICEQDLDDVGKDSYHHTFFEMLGNWSFGDY 135 Query: 102 FKERAIQLAWDLLTKEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIR 153 FK+ AIQ +W+LLT+ + LD RLY+T ++ D EA LWK + G+ D I+ Sbjct: 136 FKKEAIQYSWELLTQVYGLDPGRLYVTYFEGNKEGGLQPDLEAKALWKAV-GVPEDHILP 194 Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQ 210 DNFW M + GPCGPCSEI +D+ GG +S ++ +EIWN VF+Q+ + Sbjct: 195 GNMKDNFWEMGDQGPCGPCSEIHYDR----IGGRNAASLVNQDDPNVLEIWNNVFIQYNR 250 Query: 211 QNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNI 269 +N LP +DTGMG ER+ +VLQ+K++NYD D+F + Q + +TG + Y+G Sbjct: 251 ENDGSLRSLPNKHVDTGMGFERLVSVLQDKSSNYDTDVFGPIFQTIQVITGAREYQGRFG 310 Query: 270 VN--------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE-- 319 + +RV+ DH+R+ F I+DG++P NEGRGYV+RR++RR YAR E Sbjct: 311 TDDSDGIDTAYRVVADHVRTLMFAISDGVVPNNEGRGYVIRRVLRRGARYARKYFNVEIG 370 Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLG 377 ++P + ++G +PEL Q + + E L E+ F KTLDRG + + Sbjct: 371 SFFSKIVPTVVEQLGDMFPELKQKQQDVIEILNEEEISFAKTLDRGERQFEQYAQQAKTA 430 Query: 378 KDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437 D L+G ++LYDT G P+D+ + + RGL ID ++ EE R +A+ S G Sbjct: 431 GDHKLHGADVWRLYDTFGFPVDLTRIMAEERGLE-ID----DRQFEEARHKAKEASKGQK 485 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 TT G+ + +DL + K + K I V++ +KAI Sbjct: 486 KTTT-----------GSVKLDVHDLGKLEKMNGVPKTDDSAKFEI---GNVTAQIKAIY- 530 Query: 498 QGEIVEEAV----SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEG 552 G+ + +++ ++ D+T FYAE GGQ DTG + DG L++ DVQ+ A G Sbjct: 531 HGKTFHSSTQNLDDSEQIGIILDRTNFYAEQGGQENDTGRIVIDGQAELEVVDVQQYA-G 589 Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612 +H ++ G + + +++ D R + NH+ TH+L+ AL +LG + Q GS + Sbjct: 590 YVLHTGYMKYGSFKVDDTVICEYDELRRWPIRNNHTGTHILNFALRGVLGDGIEQKGSLV 649 Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTK 671 + + LRFD +H P+T EL IED I +N V ++ + A +G A+ G Sbjct: 650 SAEKLRFDFSHKSPVTDVELVKIEDLSTQYIRRNCLVYSKEVPLSIARNIAGVRAVFGET 709 Query: 672 YNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGI 720 Y D VRVVSV E + S CGGTHV TG+I L I+ ES I GI Sbjct: 710 YPDPVRVVSVGAELDEILKNVEDPRWADFSIEFCGGTHVQKTGDIKDLVILEESGIAKGI 769 Query: 721 RRIEAITGQRA 731 RRI A+TG+ A Sbjct: 770 RRIIAVTGEDA 780 >gi|313665096|ref|YP_004046967.1| alanine--tRNA ligase [Mycoplasma leachii PG50] gi|312949489|gb|ADR24085.1| alanine--tRNA ligase [Mycoplasma leachii PG50] Length = 896 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 299/932 (32%), Positives = 487/932 (52%), Gaps = 106/932 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L+FF H L SLIP +DP+L++ NSG+ K F G++ P +T Sbjct: 6 TNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AIQLAW+LLT + FD+D Sbjct: 66 SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIQLAWELLTDKNYFDID 121 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LYITV++ED EA+ +WK + + D I R++ NFW + + GPCGP +EIF+D+GE Sbjct: 122 KNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRGE 180 Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 I L + E +RYIE+WN+VF QF LP+ +IDTG GLER A++ Sbjct: 181 VWDPNKIGSRLISDNIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLERFASI 240 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSSS 283 Q N++ D+F I+ EQ+T KY +N N +VI DH+R++ Sbjct: 241 FQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATV 300 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 F I+DG+ P N+ RGY++RR++RR+ + + LG + + L+ ++ M YP LI Sbjct: 301 FAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYPYLIDR 360 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 K L+E+T++ E+E+F KTL +G LL+ ++ I++G A L++++G P++ + Sbjct: 361 KTLVEQTIKDEEEKFLKTLSKGYDLLENIIK---TKNIVSGKDALLLFESYGFPIEQTIE 417 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDL 462 I + +D+ FN LE+ + R L + + F+ LK + ++F G+ Sbjct: 418 ISELSNVQ-VDVEGFNNLLEQAKQATRNARKDLKAWDKQNELFTKLKVE---SEFTGW-- 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 S+ +++ KV+ Q ++ E+++ Q+ V+ D+TPFYA Sbjct: 472 ---SELSRDNVKVIY----------------MFTDQKQV--ESITDQEAFVILDKTPFYA 510 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ D+G D ++ + DVQ+ +H V+ G L+ + ++ + R Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPTHQNIHRIKVQ-GTLKVNDLINCRVEEEKRIY 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHS TH++H+AL +LG++V Q+GS +GLR D T+ + TS EL ++ V + Sbjct: 570 TMKNHSGTHMIHYALREVLGTNVMQSGSYNDENGLRMDFTYHRLPTSEELLKAQNLVLEK 629 Query: 643 IAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + T + E+++ A A KY+ VRV+ G SS LCGGTHV++ Sbjct: 630 IKNKIDRQTYFCSLEESVKKHQALAFFTEKYDQIVRVIKF-----GDFSSELCGGTHVNN 684 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD------------EKLKSLASFL 749 T EI I S +G+ RI+ +T RA + + + +K L Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFRAVNEYLNEQFKAYKDQAESIIDKYNQNKDLL 744 Query: 750 KVSQ---------------------GNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786 K Q +++ +++E+ ++Y K LI A + L+ Sbjct: 745 KNDQLENIYLQIKNITINKDNLLVIKDLLDQLKEVNKDYDKKVNDLITANKLLKYKDLTP 804 Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846 S +K ++N + +++ K+LK + D L+ K I++L+ +KE +++ V + L Sbjct: 805 SLNK-DNINEIRLETTDLTIKDLKQLADDLRNKYNDLIVILLSSTKENNF-IVVAVGQSL 862 Query: 847 LDRFNAVDLARLSAKVLGG--GGGGGRPHMAQ 876 +++ A+D+ L G GGG ++AQ Sbjct: 863 QNKYKAIDIFN----NLEGYETKGGGNANLAQ 890 >gi|42560730|ref|NP_975181.1| alanyl-tRNA synthetase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|48428509|sp|P61704|SYA_MYCMS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|42492226|emb|CAE76823.1| alanine-tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321137|gb|ADK69780.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 896 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 299/932 (32%), Positives = 488/932 (52%), Gaps = 106/932 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L+FF H L + SLIP +DP+L++ NSG+ K F G++ P +T Sbjct: 6 TNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT K FD+D Sbjct: 66 SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKKYFDID 121 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LYITV++ED EA+ +WK + + D I R++ NFW + + GPCGP +EIF+D+GE Sbjct: 122 KNKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRGE 180 Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 I L E +RYIE+WN+VF QF LP+ +IDTG GLER A++ Sbjct: 181 IWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLERFASI 240 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSSS 283 Q N++ D+F I+ EQ+T KY +N N +VI DH+R++ Sbjct: 241 FQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATV 300 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 F I+DG+ P N+ RGY++RR++RR+ + + LG + + L+ ++ M YP LI Sbjct: 301 FAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYPYLIDK 360 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 K L+E+T++ E+E+F KTL +G LL+ ++ K+ + + D A L++++G P++ + Sbjct: 361 KTLVEQTIKDEEEKFLKTLSKGYDLLENIIK--TKNTVSDKD-ALLLFESYGFPIEQTIE 417 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDL 462 I + +D+ F + LE+ + R L + + F+ LK + ++F G+ Sbjct: 418 ISELSNVT-VDVEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKVE---SEFTGW-- 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 S+ +++ KV+ Q ++ E+++ Q+V V+ D+TPFYA Sbjct: 472 ---SETSRDNAKVIY----------------MFTDQKQV--ESITNQEVFVILDKTPFYA 510 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ D+G D ++ + DVQ+ +H V+ G L+ + +D + R Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPTHQNIHRIKVQ-GTLKVNDLINCRVDEEKRIY 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHS TH++H+AL +LG+ V Q+GS +GLR D T+ + T+ EL ++ V + Sbjct: 570 TMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629 Query: 643 IAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + T + E+++ A A KY+ VRV+ G SS LCGGTHV++ Sbjct: 630 IKNKIDRQTYFCSLEESVKKHQALAFFTEKYDQIVRVIKF-----GDFSSELCGGTHVNN 684 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD------------EKLKSLASFL 749 T EI I S +G+ RI+ +T RA + + + +K L Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFRAVNEYLNEQFKVYKDQAESIIDKYNQNKDLL 744 Query: 750 KVSQ---------------------GNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786 K Q N++ + +E+ ++Y K LI A + L+ Sbjct: 745 KNDQLENIYLQIKNTTINKDNLLVIKNLLDQSKEVNKDYDKKVNDLITANKLLKYKDLTP 804 Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846 S +K ++N + ++++ K+LK + D L+ K I++L+ + E +++ V++ L Sbjct: 805 SLNK-DNINEIRLETTDLNIKDLKQLADDLRNKYNDLIVILLSSTNE-NTFIVVAVSQSL 862 Query: 847 LDRFNAVDLARLSAKVLGG--GGGGGRPHMAQ 876 +++ A+D+ L G GGG ++AQ Sbjct: 863 QNKYKAIDIFN----NLEGYETKGGGNANLAQ 890 >gi|307210107|gb|EFN86804.1| Alanyl-tRNA synthetase, cytoplasmic [Harpegnathos saltator] Length = 972 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 288/772 (37%), Positives = 421/772 (54%), Gaps = 58/772 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 IR +++FF+ GHE + SSS IP +DPTL+FTN+GM FK IF G P + V Sbjct: 10 IRQAYIDFFKNKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMAKWVRV 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+ LT+ L Sbjct: 70 VNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICSWAWEFLTETLKLP 129 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + DE E +LW + G+ A ++ DNFW M ETGPCGPCS Sbjct: 130 ADRLYVTYFGGDEKNGLAPDNECKELWLSL-GIPASHVLPGNMKDNFWEMGETGPCGPCS 188 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 E+ +D+ GG + + + +EIWNLVF+Q+ ++ LPK ID G+GL Sbjct: 189 ELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQYNREADGNLKPLPKKHIDCGLGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYE---GNNIVN-----HRVIVDHLRS 281 ER+ +V+Q K NYD DLF L A E+ TG Y+ G + VN +RV+ DH R+ Sbjct: 245 ERLVSVIQNKRANYDTDLFMPLFAAIEKGTGAPPYQGKIGTDDVNRVDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPEL 340 + +ADG +P N GRGYVLRRI+RRA+ YA +P L + E +G +PE+ Sbjct: 305 ITIALADGGIPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVELLGEVFPEV 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + I + + E+ +F KTL RG LL+ ++ L ++ + GDVA++LYDT+G P+D+ Sbjct: 365 TKDPQSIIDIVNEEETQFLKTLSRGRNLLNRTIAKLESNDTVPGDVAWRLYDTYGFPIDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + +GL ID+ + EE + +A+ S G ++I + + T+ Sbjct: 425 TQLMTEEKGLK-IDMAGY----EESKKQAQLISQNKVGGVDDQINLDV---HSITELQER 476 Query: 461 DLLRGSKFMKEDRKVLCQK--PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 + K + K+ + + ++++ + + V++ SG++V ++ D+T Sbjct: 477 GIKPTDDSPKYNYKITSTTTYKEYEFAPCIGTVIE-LRRAKTFVDQVSSGEEVGILLDRT 535 Query: 519 PFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 FYAE GGQ+ D G + + ++I +VQ +A G +H V GIL+ + + Sbjct: 536 NFYAEQGGQIYDEGFLVKVDDEATEIRIKNVQVRA-GYVLHIGTVGEGILKKGDQVHANV 594 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D RR + NHSATH L+HAL +LG+ Q GS + PD LRFD T+ P+T+ ++K+ Sbjct: 595 DTTRRRLVMANHSATHALNHALRKVLGTEADQKGSLVAPDRLRFDFTNKGPMTTEQVKNA 654 Query: 636 EDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV-----EYEDGGVH 689 E+ ND+I N + + N A G A+ Y D VRVVS+ E E + Sbjct: 655 ENITNDMIKDNKKIYAKESNLALAKTIQGLRAMFEETYPDPVRVVSMGVPIEELEKNPLS 714 Query: 690 SSA------LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 A CGGTH+ TG I I SE +I GIRRI A+TG A L Sbjct: 715 PVATQTSVEFCGGTHLHYTGHIGDFIIASEEAIAKGIRRIVALTGPEAAKAL 766 >gi|332020821|gb|EGI61219.1| Alanyl-tRNA synthetase, cytoplasmic [Acromyrmex echinatior] Length = 1010 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 337/960 (35%), Positives = 496/960 (51%), Gaps = 98/960 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 N IR +++FF+ GHE + SSS IP +DPTL+FTN+GM FK IF G P Sbjct: 43 NAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPTLLFTNAGMNQFKPIFLGTVDPNSDMAK 102 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + V QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK AW+ LT Sbjct: 103 WVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKNEICAWAWEFLTDV 162 Query: 118 FDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 L RLY+T + DE D+E LW + G+ A ++ DNFW M ETGPC Sbjct: 163 LKLPADRLYVTYFGGDEKSGLAPDDECKNLWLSL-GVPASHVLPGNMKDNFWEMGETGPC 221 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSE+ +D+ GG + + + +EIWNLVF+Q+ ++ LPK ID Sbjct: 222 GPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQYNRELNGSLKSLPKKHIDC 277 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNHRVIVD 277 G+GLER+ +V+Q K NYD D+F L A E+ TG Y+G N I + +RV+ D Sbjct: 278 GLGLERLVSVIQNKRANYDTDVFMPLFAAIEEGTGAPPYQGKVGADDVNGIDMAYRVLAD 337 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + +ADG +P N GRGYVLRRI+RRA+ YA L + L+ + +G Sbjct: 338 HARTLTIALADGGVPDNTGRGYVLRRILRRAVRYATEKLNAKQGFFGSLVNVVVDLLGDV 397 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PE+ + I E + E+ +F KTL RG LL+ ++ L + + GDVA++LYDT+G Sbjct: 398 FPEVRKDPQSIIEIINEEESQFLKTLSRGRNLLNRTIAKLESADTVPGDVAWRLYDTYGF 457 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + +GL IDI + EE + +A+ S G ++I F + + T+ Sbjct: 458 PIDLTQLMTEEKGLK-IDIAGY----EESKKQAQLISQNKAGGVDDQINFDV---HAITE 509 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG-VSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + K D KV + + + V A+ + V+E SG++V ++ Sbjct: 510 LQKQGVKPTDDSPKYDYKVTTEIKYKEYEFAPCTGTVIALRRAKTFVDEVSSGEEVGILL 569 Query: 516 DQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 D+T FYAE GGQ+ D G + + ++I +VQ +A G +H V G LR + Sbjct: 570 DRTNFYAEQGGQIYDEGFLVKVDDETTEIRIKNVQIRA-GYVLHIGTVGEGTLRKGDKVH 628 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 +D + RR + NHSATH+L++AL +LG+ Q GS + PD LRFD T+ P+T +L Sbjct: 629 TNVDTERRRFVMANHSATHVLNYALRKVLGTKADQKGSLVAPDRLRFDFTNKGPMTGGQL 688 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----EYE 684 + E N++I +N + + N AIA G A+ Y D VRVVSV E Sbjct: 689 QDTEQLANNVITENEKIYAKESNL--AIAKTIQGLRAMFEETYPDPVRVVSVGIPVENLE 746 Query: 685 DGGVHSSAL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA----RSH 734 + ++AL CGGTH+ T I IVSE +I GIRRI A+TG A R+ Sbjct: 747 KDPLSTAALETSVEFCGGTHLHYTSHIGNFTIVSEDAIAKGIRRIVALTGPEAAKALRTG 806 Query: 735 LMGQDEKLKSLASF----LKVSQGNVVGRVEEIWEE--------YRKLQLIHAKRKLQLN 782 ++ Q + + AS + + V + E+ EE Y K + + + L+ + Sbjct: 807 MLLQRQLSQFQASIEDDKSETNSKEYVREIVELTEEISHALIPAYWKDHMRNTLKNLKKS 866 Query: 783 VEDLSCHKIADV------NFMSHIISEVDSKELKSVMDALQ--KKIQSGIIMLVGISKEK 834 ++D A V S I S+V + L V++A K + + + IS E Sbjct: 867 LDDKERAAKATVATTVVQTAQSIIESKVGCQVLVEVLEAYSNTKALDQALKKIRAISPET 926 Query: 835 KASVLIVVTEDLLDRF--NAVDLARLSAKV-----------LGGGGGGGRPHMAQSGGPN 881 A +LI + D+ F ++V + +S + L G GGG+ AQ+ G N Sbjct: 927 SA-LLISIDHDVKKIFALSSVPKSAVSKGLKANEWIQAITSLMQGKGGGKSESAQASGSN 985 >gi|87307364|ref|ZP_01089509.1| alanyl-tRNA synthetase [Blastopirellula marina DSM 3645] gi|87290104|gb|EAQ81993.1| alanyl-tRNA synthetase [Blastopirellula marina DSM 3645] Length = 937 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 280/781 (35%), Positives = 413/781 (52%), Gaps = 62/781 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R +L F++ GH S L+P DP+++FT +GM FK+ F G+ K + TT QK Sbjct: 6 LREKYLSFYETKGHSRRASDVLVPTWDPSVLFTPAGMNQFKDHFLGRVKLDFTRATTCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R G D+DNVGRT HHTFFEMLGNFSFG YFK AI AW+ LT K L + Sbjct: 66 CLRTG----DIDNVGRTAYHHTFFEMLGNFSFGDYFKPEAISWAWEFLTDKKWLGLPADQ 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW-----SMAETGPCGPCSEIFFDQ 179 L +TVY +D+EA W + GL +I R+ ++NFW S+ G CGPCSEI+F Sbjct: 122 LTVTVYKDDDEAADYWHEKIGLPTSRIHRLEEDENFWPASAPSLGPDGVCGPCSEIYF-- 179 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237 +G +EIWNLVF QF + + LP +IDTGMGLER A L Sbjct: 180 -----------HPKGSSPVEIWNLVFTQFNRVGDPPNNLEPLPSKNIDTGMGLERTAATL 228 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q NY ID+ + +++A+ ++ G+KY E +N R I DH+R+ +F I + + P Sbjct: 229 QGVATNYHIDILRPIVEAAGEICGVKYVPEDDNGRRLRRITDHVRACTFAIHENVYPGAN 288 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 YV+RR++RRA+ +G EP L+ + M + YPEL + + +R+E+ Sbjct: 289 KEKYVIRRLLRRAVLDGHQMGLREPFAYQLVDKVAEMMKAGYPELQETTQRVANVIRTEE 348 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E F LD GL + V + + KD I++G+ A +LY T+G P ++ + + +GLA Sbjct: 349 ENFLDRLDDGLARTEKVFNTMRKDNLTIVDGNDAAELYQTYGFPPELFEQVAAEKGLA-F 407 Query: 414 DIISFNQALEE-QRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D + A+E+ S+ +G E SLK T ++GYD + + Sbjct: 408 DWPGYKAAMEKFGEETGGGTSVLFTTGPIE----SLKNTLRKTDYVGYD--------QSE 455 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 V + +G S + Q GE + VV D TPFY E+GGQ+GD+G Sbjct: 456 ADVTIKGIVAHDADGASKLFDDYDQTGE-------AHPLIVVTDCTPFYGESGGQVGDSG 508 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSIN--HSAT 590 +G R +TD QK ++ +F+HH + G + + + R+L I HSAT Sbjct: 509 EIVGAAFRFVVTDTQKDSD-LFLHHGYLASGKISSNTDAKAIV---GERRLGIQRAHSAT 564 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 H+LH+AL LG+H Q GS + D LRFD T+ +T +L +IE++VN+ + + V Sbjct: 565 HILHYALQKNLGAHAQQQGSKVDEDWLRFDFTNLAAVTPEQLAAIEEDVNERVEASEKVK 624 Query: 651 TRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYI 710 + A GA L G KY D VR+VS+ G S LCGGTH++STG++ + + Sbjct: 625 WETVPLAKARELGAMMLFGEKYPDPVRLVSM-----GTFSRELCGGTHLTSTGDVGMFEV 679 Query: 711 VSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 +SE AG+RRI A+TG +A+ + L +A L V +V V+E+ + R L Sbjct: 680 ISEEGPSAGVRRIVALTGTKAKEYRQQVAASLGDIAKSLGVHTLDVPVAVKELMQYVRDL 739 Query: 771 Q 771 + Sbjct: 740 K 740 >gi|331232484|ref|XP_003328904.1| alanyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307894|gb|EFP84485.1| alanyl-tRNA synthetase [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 969 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 282/776 (36%), Positives = 407/776 (52%), Gaps = 74/776 (9%) Query: 7 IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QA 60 +R TF E+FQ ++ H + SSS++P +DPTL+F N+GM +K IF G P + + Sbjct: 18 VRKTFFEYFQNQHAHTFVHSSSVVPFDDPTLLFANAGMNQYKPIFLGTIDPSHPFKNLKR 77 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AI +AWDLLT+ + L Sbjct: 78 AVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKSEAIHMAWDLLTRVYAL 137 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+T + D E+ ++W + G+ DK++ DNFW M +GPCGPC Sbjct: 138 PKDRLYVTYFQGDPAQNLLPDLESKQIWIDL-GVHPDKVLPGNAKDNFWEMGTSGPCGPC 196 Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI +D+ GG + +++ +EIWN VF+Q+ ++ LP +DTGMG Sbjct: 197 SEIHYDR----VGGRNAAELVNQDDPMVLEIWNNVFIQYNREPSGSLKPLPARHVDTGMG 252 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLR 280 ER+ +VLQ+KT+NYD D+FK L +++TG + + +RVI DH+R Sbjct: 253 FERLVSVLQDKTSNYDTDVFKPLFDRIQELTGARPYAGKLGEDDVDGIDTAYRVIADHVR 312 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMGSAY 337 + +F I+DG +P N GRGYVLRRI+RR Y R + P+ L P L +MG + Sbjct: 313 TLTFAISDGGVPNNVGRGYVLRRILRRGARYVR-KKFDVPIGNFFSRLAPTLIDQMGDVF 371 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHG 395 PE+ ++E L E+ F TLDRG + + K+ L+G ++LYDT+G Sbjct: 372 PEIRSKTEELKEILDEEEASFALTLDRGEKMFEKYAEKAKKEGKKNLDGQDVWRLYDTYG 431 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ ++ GID F A+A S L G +K+ Sbjct: 432 FPVDLTL-LMAEEARLGIDHDGFEM--------AQAASKELSKGGKKKV---------VG 473 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVE 512 + D+ ++ D+ ++ +++ VKAI G+ E S + Sbjct: 474 TAVELDVHAIAELESNDKVPKTDDSSKFASSSITATVKAIYYDGKFHSSTEAVPSSSRCG 533 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 ++ D+T FYAE GGQ DTG + DVQ G +H +V G+L+ S Sbjct: 534 IILDKTNFYAEQGGQENDTGSLTNPEKQTTFDVEDVQ-VYNGYVLHSGLVSEGVLQVGDS 592 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + D R + NH+ TH+L+ AL LG H+ Q GS + P LRFD +H + +T Sbjct: 593 VSAAYDELRRWPIRNNHTGTHVLNWALRETLGDHIDQKGSLVAPSKLRFDFSHKQQVTID 652 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----EYE 684 EL IE N I+++ PV R M ++A G A+ G Y D VRVV V + Sbjct: 653 ELSKIESTCNQWISKSFPVAAREMRLDEAKKIPGLRAVFGEAYPDPVRVVVVGPNPFDLL 712 Query: 685 DGGV-------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 D + +S CGGTHV T EI L +V ES I G+RRI A+TG+ ARS Sbjct: 713 DADLTDPKWSNYSVEFCGGTHVKLTSEIKQLVLVEESGIAKGVRRIVAVTGEEARS 768 >gi|94734006|emb|CAK04587.1| alanyl-tRNA synthetase [Danio rerio] Length = 966 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 320/981 (32%), Positives = 490/981 (49%), Gaps = 112/981 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 66 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + + + +EIWNLVF+QF ++++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A Sbjct: 301 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG+ + GD A+ LYDT+G Sbjct: 361 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+ I RG+ G+D+++F EE++ A+ S G GSG + I + Sbjct: 421 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 467 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512 D LR D + D N V A+ ++ V+E ++GQ+ Sbjct: 468 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 526 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTE 568 V+ D+T FYAE GGQ D G + + R++ T + G +V H G L+ Sbjct: 527 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVG 586 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 L L +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T ++ Sbjct: 587 DRLTLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMS 645 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV- 681 + E++ E+ +IA V DA + A A+ G + Y D VRVVS+ Sbjct: 646 TDEVRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIG 700 Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A Sbjct: 701 VPVEELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEA 760 Query: 732 RSHLMGQD----------EKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKR 777 + D EK+K+ + K Q + E + ++RK ++ + + Sbjct: 761 QKAQRKADALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLK 820 Query: 778 KLQLNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQK 818 L+ ++DL ADV + + S +K L + L+ Sbjct: 821 GLKKIMDDLDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKT 880 Query: 819 KIQSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ML + + K L V +D+ +R A + + +L G GGG+ AQ Sbjct: 881 NSPQTAAMLFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQ 939 Query: 877 SGGPNGNKADQAIAGVASFLK 897 + G N +A+ + F + Sbjct: 940 ATGRNTQCIQEALQLASEFAR 960 >gi|314966609|gb|EFT10708.1| alanyl-tRNA synthetase [Propionibacterium acnes HL082PA2] Length = 892 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 314/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGVRHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LLP M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLPVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD V + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VEVV +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGASVSAAEPGAVVEVVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPT 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G K VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKSPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 746 RVSKLATDLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 ATEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|297852712|ref|XP_002894237.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] gi|297340079|gb|EFH70496.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] Length = 955 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 280/774 (36%), Positives = 412/774 (53%), Gaps = 84/774 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R T+++FF+ GH+ PSS ++P NDPTL+F N+GM +K IF G P + +A Sbjct: 16 VRDTYVDFFKGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLTRA 75 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 76 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGL 134 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y T + DE EA +W + L + +++ DNFW M +TGPCGPC Sbjct: 135 PTDRIYATYFGGDEKAGLQPDNEARDIWLQF--LPSGRVLPFGCKDNFWEMGDTGPCGPC 192 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EI +D+ G L + + +EIWNLVF+QF +++ LP +DTGMG E Sbjct: 193 TEIHYDRVGNRDAAYLVNNDD--PTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFE 250 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282 R+ +VLQ K +NYD D+F + ++ TG + + + +RV+ DH+R+ Sbjct: 251 RLTSVLQNKMSNYDTDVFMPIFDDIQKATGARAYSGKVGPEDDDRVDMAYRVVADHIRTL 310 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELI 341 SF IADG P NEGR YVLRRI+RRA+ Y + +L E L+ ++ MG + EL Sbjct: 311 SFAIADGSRPGNEGREYVLRRILRRAVRYGKQILKAEEGFFNGLVSSVIRVMGDVFTELK 370 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + + I E ++ E+ F KTL +G+ + + L+G+ AF L+DT+G PLD+ Sbjct: 371 EHEKKITEIIKEEEASFCKTLVKGIEKFQKAEQAV-QGNTLSGEDAFVLWDTYGFPLDLT 429 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + R L +D+ FN+A+EE R R+R S + K Sbjct: 430 QLMAEERRLL-VDVEGFNKAMEEARERSR----------------SAQNKQAG------- 465 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSGQKVE 512 G+ M D K + T+ S +KAI +E + V Sbjct: 466 ---GAIVMDADATSTLHKTGVSATDDSFKYIWFQDHESELKAIYTGSTFLESLAATDNVG 522 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER--GILRTEMS 570 +V T FYAE GGQ+ DTG G + +VQ G VH + + G + Sbjct: 523 LVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQIFG-GFVVHIGYLSKDAGEVSVGDK 581 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 ++ +DY+ R+ ++ NH+ TH+L+ AL +LG H+ Q GS + P+ LRFD +H KP+ Sbjct: 582 VICKVDYERRKLIAPNHTCTHMLNFALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPE 641 Query: 631 ELKSIEDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV------- 681 +L+ IE VN I L V ++ +++ I G A+ G Y D VRVVS+ Sbjct: 642 DLRRIESIVNKQIKDELDVFSKEAVLSEAKRI-KGLRAVFGEVYPDPVRVVSIGRQVEDL 700 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E + + SS CGGTH+++T E ++SE I GIRR+ A+T + A Sbjct: 701 LADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECA 754 >gi|289425435|ref|ZP_06427212.1| alanine--tRNA ligase [Propionibacterium acnes SK187] gi|289154413|gb|EFD03101.1| alanine--tRNA ligase [Propionibacterium acnes SK187] Length = 913 Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust. Identities = 313/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 24 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 82 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 83 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 138 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 139 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 197 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 198 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 255 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 256 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 315 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P++ Sbjct: 316 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 375 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD V + + L+G+ AF+L+DT+G P+ Sbjct: 376 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 435 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 436 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 494 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VE+V +T Sbjct: 495 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 531 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 532 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 590 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 591 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 650 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G KY VRVV E G S LCGGTH Sbjct: 651 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 706 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 707 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 766 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 767 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 825 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 826 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 884 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 885 KDDMAQGAGSDPTGIDAALRAVNTEL 910 >gi|156838512|ref|XP_001642960.1| hypothetical protein Kpol_1071p9 [Vanderwaltozyma polyspora DSM 70294] gi|156113543|gb|EDO15102.1| hypothetical protein Kpol_1071p9 [Vanderwaltozyma polyspora DSM 70294] Length = 957 Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust. Identities = 313/943 (33%), Positives = 486/943 (51%), Gaps = 100/943 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 N + +R TF ++F+ H + SS ++P +DPTL+F N+GM FK+IF G P Sbjct: 12 NANKVRDTFYDYFKSKNHTFISSSPVVPYDDPTLLFANAGMNQFKSIFLGTVDPTSKLYD 71 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDL++VG+ + HHT+FEMLGN+SFG YFK AI +WDLLT Sbjct: 72 LKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTYFEMLGNWSFGDYFKNDAIVYSWDLLTNV 131 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RLY++ ++ DE EA +W+ + G+ D I+ DNFW M E GPC Sbjct: 132 YKIPKDRLYVSYFEGDESQGLEPDFEARDIWRSV-GVPEDHIVPGNLKDNFWEMGEEGPC 190 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GP SEI +D+ GG S +++ +EIWNLVF+Q+ + ++++ LP +DT Sbjct: 191 GPSSEIHYDR----IGGRNASQLVNKDDPNVLEIWNLVFIQYNRDSERKLKALPAKHVDT 246 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM--------KYEGNNI-VNHRVIVD 277 GMG ER+ +VLQ +NYDIDLF + + + +T KY+ + + +RV+ D Sbjct: 247 GMGFERLVSVLQNVNSNYDIDLFTKIFKRIQAITNAREYTGKFGKYDVDGVDTAYRVLAD 306 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGS 335 H R+ +F + DG +P NEGRGYV+RRI+RR YAR + Y+ L+P + E S Sbjct: 307 HARTLTFALTDGCIPNNEGRGYVIRRILRRGARYARKYMNYSIGDFFSKLIPQVIEENKS 366 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDT 393 +PE+ + I+E L E+ F KTLDRG L + S K + L+G ++LYDT Sbjct: 367 IFPEVSKDFNYIKEILDEEEASFAKTLDRGEKLFEKYASDASKLDSKTLDGLQVWRLYDT 426 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G P+D+ + + GL ID+ F +A ++ ++ S +KY Sbjct: 427 YGFPVDLTELMAQELGL-NIDVPGFERAKKDSYEASKRAS----------------KKYD 469 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVS-GQKVE 512 F D+ SK + K + T+ ++++++ I E ++ A +K Sbjct: 470 IDLF-KLDVHDISKLNTDAVPKTNDKDKYETTDVMATVLR-IHDGSEFLDVAADKDKKYG 527 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 V+ D+T FYAE GGQ+ D G I DG + +VQ + G +H + G L T + Sbjct: 528 VILDKTCFYAEQGGQIYDNGKLIIDGKTEFNVENVQ-EFNGYILHIGTLMDGKLSTNDKV 586 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 V + D R + NH+ TH+L+ AL +LG V Q GS +TP+ RFD +H KP+T E Sbjct: 587 VASFDELRRFPIRNNHTGTHILNFALRDVLGKDVEQKGSLVTPEKFRFDFSHKKPLTLDE 646 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------YE 684 +K IE + +I PV + + +A S A+ G Y D VRVVS+ E Sbjct: 647 IKEIEMICDTLIVSKKPVFYKNVQLNEAKRISSIRAVFGESYPDPVRVVSIGQPVEKILE 706 Query: 685 DGGVHSSA-----LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARS 733 D +S+ CGGTHV++T +I L I+ E+ I GIRRI A+TG QR Sbjct: 707 DPTETNSSEFSIEFCGGTHVANTEDIQKLAIIEETGIAKGIRRITAVTGPEAFNAQRIAE 766 Query: 734 HLMGQ-------------DEKLKSLASFLKVSQGNVV---------GRVEEIW-EEYRKL 770 G+ D+K+K L L S +V+ ++E+ + EE RK Sbjct: 767 QFNGELDDLNSLPFSDAKDKKIKELGFSLNQSTVSVLSKHLLREKFNKIEKKYKEELRKK 826 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQS-GIIMLVG 829 + AK L E + +K + F+ +SK + ++ ++ I +L G Sbjct: 827 NKLEAKVILDKVQEYFNTNKSSKF-FVYAFDIPANSKAITDAINYIKNSNNDKSIYLLSG 885 Query: 830 ISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGR 871 K K + +++D + + + +L ++ ++GG GG + Sbjct: 886 DIKGNKLAHGCYLSDDAISKGIDGEELVKVVTTLIGGKAGGRK 928 >gi|313812791|gb|EFS50505.1| alanyl-tRNA synthetase [Propionibacterium acnes HL025PA1] Length = 892 Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust. Identities = 312/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEACEAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VE+V +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G KY VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|315080484|gb|EFT52460.1| alanyl-tRNA synthetase [Propionibacterium acnes HL078PA1] Length = 892 Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust. Identities = 317/927 (34%), Positives = 482/927 (51%), Gaps = 74/927 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKSAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VE+V +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G KY VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGKKYPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG-GGGGG 869 ++ +++ ++ L+G + +K A +IV T + A A + A V GG GG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPA--MIVATTESARAAGAKAGALIKAGVAPIGGRGG 862 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 G+ MAQ G + D A+ V + L Sbjct: 863 GKDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|113195586|ref|NP_001037775.1| alanyl-tRNA synthetase, cytoplasmic isoform 1 [Danio rerio] gi|94734005|emb|CAK04586.1| alanyl-tRNA synthetase [Danio rerio] Length = 991 Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust. Identities = 320/981 (32%), Positives = 490/981 (49%), Gaps = 112/981 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 31 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 90 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 91 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 150 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 151 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 209 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + + + +EIWNLVF+QF ++++ LPK SIDT Sbjct: 210 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 265 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 266 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 325 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A Sbjct: 326 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVKSLGDA 385 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG+ + GD A+ LYDT+G Sbjct: 386 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGESTTIPGDTAWLLYDTYGF 445 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+ I RG+ G+D+++F EE++ A+ S G GSG + I + Sbjct: 446 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 492 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512 D LR D + D N V A+ ++ V+E ++GQ+ Sbjct: 493 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 551 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTE 568 V+ D+T FYAE GGQ D G + + R++ T + G +V H G L+ Sbjct: 552 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVG 611 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 L L +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T ++ Sbjct: 612 DRLTLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMS 670 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV- 681 + E++ E+ +IA V DA + A A+ G + Y D VRVVS+ Sbjct: 671 TDEVRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIG 725 Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A Sbjct: 726 VPVEELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEA 785 Query: 732 RSHLMGQD----------EKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKR 777 + D EK+K+ + K Q + E + ++RK ++ + + Sbjct: 786 QKAQRKADALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLK 845 Query: 778 KLQLNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQK 818 L+ ++DL ADV + + S +K L + L+ Sbjct: 846 GLKKIMDDLDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKT 905 Query: 819 KIQSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ML + + K L V +D+ +R A + + +L G GGG+ AQ Sbjct: 906 NSPQTAAMLFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQ 964 Query: 877 SGGPNGNKADQAIAGVASFLK 897 + G N +A+ + F + Sbjct: 965 ATGRNTQCIQEALQLASEFAR 985 >gi|50842658|ref|YP_055885.1| alanyl-tRNA synthetase [Propionibacterium acnes KPA171202] gi|289428540|ref|ZP_06430224.1| alanine--tRNA ligase [Propionibacterium acnes J165] gi|59798519|sp|Q6A8I8|SYA_PROAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|50840260|gb|AAT82927.1| alanyl-tRNA synthetase [Propionibacterium acnes KPA171202] gi|289158234|gb|EFD06453.1| alanine--tRNA ligase [Propionibacterium acnes J165] gi|313807674|gb|EFS46161.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA2] gi|313818711|gb|EFS56425.1| alanyl-tRNA synthetase [Propionibacterium acnes HL046PA2] gi|313820481|gb|EFS58195.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA1] gi|313822713|gb|EFS60427.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA2] gi|313825353|gb|EFS63067.1| alanyl-tRNA synthetase [Propionibacterium acnes HL063PA1] gi|314925090|gb|EFS88921.1| alanyl-tRNA synthetase [Propionibacterium acnes HL036PA3] gi|314960373|gb|EFT04475.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA2] gi|314978647|gb|EFT22741.1| alanyl-tRNA synthetase [Propionibacterium acnes HL072PA2] gi|314987967|gb|EFT32058.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA2] gi|314989777|gb|EFT33868.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA3] gi|315084155|gb|EFT56131.1| alanyl-tRNA synthetase [Propionibacterium acnes HL027PA2] gi|315085498|gb|EFT57474.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA3] gi|315088445|gb|EFT60421.1| alanyl-tRNA synthetase [Propionibacterium acnes HL072PA1] gi|315105744|gb|EFT77720.1| alanyl-tRNA synthetase [Propionibacterium acnes HL030PA1] gi|327331786|gb|EGE73523.1| alanine--tRNA ligase [Propionibacterium acnes HL096PA3] gi|328753318|gb|EGF66934.1| alanyl-tRNA synthetase [Propionibacterium acnes HL020PA1] Length = 892 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 312/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VE+V +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G KY VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|295130736|ref|YP_003581399.1| alanine--tRNA ligase [Propionibacterium acnes SK137] gi|291377126|gb|ADE00981.1| alanine--tRNA ligase [Propionibacterium acnes SK137] gi|313771981|gb|EFS37947.1| alanyl-tRNA synthetase [Propionibacterium acnes HL074PA1] gi|313810181|gb|EFS47902.1| alanyl-tRNA synthetase [Propionibacterium acnes HL083PA1] gi|313830512|gb|EFS68226.1| alanyl-tRNA synthetase [Propionibacterium acnes HL007PA1] gi|313833548|gb|EFS71262.1| alanyl-tRNA synthetase [Propionibacterium acnes HL056PA1] gi|314973512|gb|EFT17608.1| alanyl-tRNA synthetase [Propionibacterium acnes HL053PA1] gi|314976192|gb|EFT20287.1| alanyl-tRNA synthetase [Propionibacterium acnes HL045PA1] gi|314983786|gb|EFT27878.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA1] gi|315096059|gb|EFT68035.1| alanyl-tRNA synthetase [Propionibacterium acnes HL038PA1] gi|327326339|gb|EGE68129.1| alanine--tRNA ligase [Propionibacterium acnes HL096PA2] gi|327445767|gb|EGE92421.1| alanyl-tRNA synthetase [Propionibacterium acnes HL043PA2] gi|327448250|gb|EGE94904.1| alanyl-tRNA synthetase [Propionibacterium acnes HL043PA1] gi|328760699|gb|EGF74265.1| alanine--tRNA ligase [Propionibacterium acnes HL099PA1] Length = 892 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 317/927 (34%), Positives = 482/927 (51%), Gaps = 74/927 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKSAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VE+V +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G KY VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG-GGGGG 869 ++ +++ ++ L+G + +K A +IV T + A A + A V GG GG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPA--MIVATTESARAAGAKAGALIKAGVAPIGGRGG 862 Query: 870 GRPHMAQSGGPNGNKADQAIAGVASFL 896 G+ MAQ G + D A+ V + L Sbjct: 863 GKDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|118763839|gb|AAI28795.1| Aars protein [Danio rerio] Length = 966 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 320/981 (32%), Positives = 489/981 (49%), Gaps = 112/981 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 66 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + + + +EIWNLVF+QF ++++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A Sbjct: 301 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + GD A+ LYDT+G Sbjct: 361 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+ I RG+ G+D+++F EE++ A+ S G GSG + I + Sbjct: 421 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 467 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512 D LR D + D N V A+ ++ V+E ++GQ+ Sbjct: 468 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 526 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTE 568 V+ D+T FYAE GGQ D G + + R++ T + G +V H G L+ Sbjct: 527 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVG 586 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 L L +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T ++ Sbjct: 587 DRLTLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMS 645 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV- 681 + E++ E+ +IA V DA + A A+ G + Y D VRVVS+ Sbjct: 646 TDEVRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIG 700 Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A Sbjct: 701 VPVEELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEA 760 Query: 732 RSHLMGQD----------EKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKR 777 + D EK+K+ + K Q + E + ++RK ++ + + Sbjct: 761 QKAQRKADALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLK 820 Query: 778 KLQLNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQK 818 L+ ++DL ADV + + S +K L + L+ Sbjct: 821 GLKKIMDDLDRASKADVQKRVLEKTKEIIESNPNQPLIVMEMESGASAKALNESLKMLKT 880 Query: 819 KIQSGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQ 876 ML + + K L V +D+ +R A + + +L G GGG+ AQ Sbjct: 881 NSPQTAAMLFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQ 939 Query: 877 SGGPNGNKADQAIAGVASFLK 897 + G N +A+ + F + Sbjct: 940 ATGRNTQCIQEALQLASEFAR 960 >gi|73957022|ref|XP_536788.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) isoform 1 [Canis familiaris] Length = 968 Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust. Identities = 297/795 (37%), Positives = 430/795 (54%), Gaps = 62/795 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 7 ASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF Sbjct: 67 SRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPCG Sbjct: 127 GIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG + +++ +EIWNLVF+Q+ +++ LPK SIDTG Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278 MGLER+ +VLQ K +NYD DLF +A ++ TG + Y G + +RV+ DH Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMAYRVLADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 R+ + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+ Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAF 361 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + ++++ + E+ +F KTL RG +LD + LG + GD A+ LYDT+G P Sbjct: 362 PELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCNTIPGDTAWLLYDTYGFP 421 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ I +G+ +D+ F EE+R A+ S G G+G + I + A + Sbjct: 422 VDLTGLIAEEKGMV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDIY----AIEE 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 + L ++ + N V+++V A+ + VEE +GQ+ VV D+ Sbjct: 473 LREKGLEATEDSPKYNYHSDSSGSYTFENVVATVV-ALRRDKMFVEEVSTGQECGVVLDK 531 Query: 518 TPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 T FYAE GGQ+ D G + +++ T + G +V H G LR + L Sbjct: 532 TCFYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHIGTIYGSLRVGDQVRL 591 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 592 FIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------YED- 685 E+ N +I PV T+ A A G A+ Y D VRVVS+ ED Sbjct: 651 KAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDP 710 Query: 686 ----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ L K Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKAL----RK 766 Query: 742 LKSLASFLKVSQGNV 756 +SL + L V + V Sbjct: 767 AESLKNSLSVMEAKV 781 >gi|108799313|ref|YP_639510.1| alanyl-tRNA synthetase [Mycobacterium sp. MCS] gi|119868429|ref|YP_938381.1| alanyl-tRNA synthetase [Mycobacterium sp. KMS] gi|123178848|sp|Q1B9I0|SYA_MYCSS RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830156|sp|A1UFI3|SYA_MYCSK RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|108769732|gb|ABG08454.1| alanyl-tRNA synthetase [Mycobacterium sp. MCS] gi|119694518|gb|ABL91591.1| alanyl-tRNA synthetase [Mycobacterium sp. KMS] Length = 897 Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust. Identities = 317/906 (34%), Positives = 478/906 (52%), Gaps = 67/906 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P YQ T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYQRATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT D D Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVDQGGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+ TVY +D+EA +LW++++GL ++I R DN+WSM GPCGP SEI+ D+G Sbjct: 121 PEKLWATVYLDDDEAIQLWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIYVDRGP 180 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E+ K + IL P+ +IDTGMG+ER+A Sbjct: 181 EY--GIEGGPEANEDRYIEIWNLVFMQNERGEGTGKSDFEILGPLPRKNIDTGMGIERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291 +LQ N Y+ DL + +I A Y ++ V +R+I DH R+++ LI DG+ Sbjct: 239 CLLQGVDNVYETDLLRPVIDAVAARAPRGYGRGSHSDDVRYRIIADHSRTAAILIGDGVS 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + A+LLG + ++ L+ + MG +YPEL+ I+ Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLGIDDAVVGDLMATVRDAMGPSYPELVTDFDRIQRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E+ F +TL G L + G D L+G AF L+DT+G P+++ ++ Sbjct: 359 VAEETAFNRTLSSGSRLFEEAAQSTKAAGADR-LSGRDAFTLHDTYGFPIELTLEMAAEA 417 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 LA +D F + EQR RA+A + T+ + TQF G+D L Sbjct: 418 DLA-VDEEGFRSLMAEQRQRAKADAAARKQAHTDLTAYRELVDAHPTQFTGFDEL----- 471 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + ++L G+ + + G + A + ++E+V D++PFYAE+GGQ+ Sbjct: 472 -TTEARIL----------GIFVDGRRVPVVGH--DTATAQHRIELVLDRSPFYAESGGQI 518 Query: 529 GDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 D G G G + ++DVQK A+ ++VH VE G ++ +D + R + Sbjct: 519 ADEGTITGTGASQTAKAAVSDVQKIAKTLWVHRVTVESGEFVEGDTVTAAVDPRWRHGAT 578 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HS TH++H AL +LG + Q GS P LRFD +T + IE+ N+ + Sbjct: 579 QGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRTQIEEVTNEAVE 638 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V + E A + GA AL G Y D VRVV + GG S LCGGTHV S+ + Sbjct: 639 ADFEVHSFTTELEKAKSMGAMALFGEAYPDEVRVVEI----GGPFSLELCGGTHVRSSAQ 694 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V RV + Sbjct: 695 IGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVAGLV 754 Query: 765 EEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDALQK 818 E + + + +L ++ V ++ + + + +L++++ ++ Sbjct: 755 ERLKAAEKELDRMRLANARAAAVNAVAGAERVGKVRLVAQRMAGGMSAGDLRTLVGDIRG 814 Query: 819 KIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 K+ ++ I++ +V VV +DL R N + + + A V G GGG+ Sbjct: 815 KLGGDPAVVALIAEGDNDTVPFVVAVNPAAQDLGLRANEL-VKQFGAAV--NGRGGGKAD 871 Query: 874 MAQSGG 879 +AQ G Sbjct: 872 LAQGSG 877 >gi|196003434|ref|XP_002111584.1| hypothetical protein TRIADDRAFT_23916 [Trichoplax adhaerens] gi|190585483|gb|EDV25551.1| hypothetical protein TRIADDRAFT_23916 [Trichoplax adhaerens] Length = 959 Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust. Identities = 317/987 (32%), Positives = 501/987 (50%), Gaps = 138/987 (13%) Query: 7 IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60 IR F++FF +K H +PSSS +P +DPTL+F N+GM FK I+ G P Y+ Sbjct: 10 IRQMFIDFFVEKYNHLFVPSSSTVPHDDPTLLFANAGMNQFKPIYLGTVDPKSEMATYRR 69 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG +FK+ +I AW+LL + + Sbjct: 70 VVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDFFKKESIDWAWELLVDVYKM 129 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y+T + DE E +W G++ ++++ DNFW M +TGPCGPC Sbjct: 130 PAERMYVTYFGGDEKSGLQPDYETKNIWLA-KGIAPERVLPFGLQDNFWEMGDTGPCGPC 188 Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +EI +D+ GG + + + +E+WNLVF QF ++ + LP+ +DTG G Sbjct: 189 TEIHYDR----IGGRDAAYLVNMDDPEVLEVWNLVFTQFNREADKSLRPLPRKYVDTGAG 244 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLR 280 LER+ +V+Q +NYD DLFK L +TG + Y G + I + +RV+ DH R Sbjct: 245 LERVTSVIQGVMSNYDTDLFKPLFDKIRSLTGAREYRGLLGDADVDGIDMAYRVLADHAR 304 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPE 339 + + I+DG P + GRGYVLRRI+RRA+ YA +P M L + E +G A+PE Sbjct: 305 TLTIAISDGGKPDSTGRGYVLRRILRRAVRYATEKLDAKPGMFAQLVNVAVEKLGGAFPE 364 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLD-GVLSHLGKDEILNGDVAFKLYDTHGLPL 398 + + ++ + + E+ +F KTL RG + + VL KD +L G VA++LYDT+G P+ Sbjct: 365 VTKDPQMVIDIINEEEAQFLKTLSRGRRMFEREVLK--AKDGVLPGFVAWRLYDTYGFPV 422 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT---------EKIWFSL- 448 D+ + +GL+ ID+ + +A ++ + +R G+ E + L Sbjct: 423 DLTHIMAEEKGLS-IDMDGYEKAKQDSQELSRGKDTGVDDTVALGIHAIKDLEDLAIPLT 481 Query: 449 ----KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504 K Y + GY + +G+++ + A+ + V E Sbjct: 482 DTSPKYNYESDGNGGYTI-----------------------HGIAAKISALRYEKSFVNE 518 Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAIVE 561 ++G + ++ D++ FYAE GGQ+ D G + + ++TDVQ G +V H + Sbjct: 519 VLTGSRCGIILDKSCFYAEQGGQIYDLGFIVNSDDEDTEFKVTDVQ--IMGGYVLHVGIT 576 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G + ++ L +D + RR + NH+ATH+L+ AL LG Q GS + PD LRFD Sbjct: 577 EGTFKVGDTVQLQVDSERRRTVMNNHTATHILNFALREQLG-EADQRGSLVAPDRLRFDF 635 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDR 675 T +T+ ++K+ E+ V +II Q V + DA + A+A+ G + Y D Sbjct: 636 TAKGAMTTQQIKATEEIVGNIIEQKQQVFAK-----DATLAKASAIQGLRQVFAETYPDP 690 Query: 676 VRVVSVE------YED----GGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 VR+VSV ED G+ +S CGGTH+ ++G++ I SE I GIRRI Sbjct: 691 VRIVSVGVSVDDLLEDPTGPSGLKTSVEFCGGTHLKNSGDMEAFVISSEEPIAKGIRRII 750 Query: 725 AITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWE-----------EYRKLQLI 773 A+TG A+ + E L L + Q ++ + +I E ++RK +L Sbjct: 751 ALTGSDAKKKVTKLQESLSELMKLGRADQTSLKAKKRQITELNDSIAAVTLQQWRKDELR 810 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGII--- 825 +K++ + D+ K AD ++ + SK+L +V++ L+ + S ++ Sbjct: 811 ETLKKVKKTIIDI--EKAADSKRSQEVVEKAKEIASQSKDLSAVVEVLEAGLSSKVLDSA 868 Query: 826 -------------MLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGG 870 ML + E ++ + L V E ++ + +A D + VL G GGG Sbjct: 869 LKQFHSIAPNTAAMLFSVDSEGRRVTCLCQVPEAIMKKGLSASDWVKSVMNVL-EGKGGG 927 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897 +P AQ G N + A+ F K Sbjct: 928 KPTSAQGSGTNVAGLNNALNLAKEFAK 954 >gi|126434971|ref|YP_001070662.1| alanyl-tRNA synthetase [Mycobacterium sp. JLS] gi|205830155|sp|A3PZ44|SYA_MYCSJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|126234771|gb|ABN98171.1| alanyl-tRNA synthetase [Mycobacterium sp. JLS] Length = 897 Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust. Identities = 317/906 (34%), Positives = 478/906 (52%), Gaps = 67/906 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+ F K GH +PS+S+I +DP L+F N+GMV F F GQ P YQ T++QK Sbjct: 6 IRKRFLDHFVKAGHTEVPSASVI-LDDPNLLFVNAGMVQFVPFFLGQRTPPYQRATSIQK 64 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD-----LD 121 C+R D+D VG T RH+TFF+M GNFSFG YFK+ AI+ AW LLT D D Sbjct: 65 CIRT----PDIDEVGITTRHNTFFQMAGNFSFGDYFKKGAIEFAWTLLTNPVDQSGYGFD 120 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +L+ TVY +D+EA +LW++++GL ++I R DN+WSM GPCGP SEI+ D+G Sbjct: 121 PEKLWATVYLDDDEAIQLWQEVAGLPLERIQRRGMADNYWSMGIPGPCGPSSEIYVDRGP 180 Query: 182 CIPGGLPGSSEEGE-RYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLERMA 234 G+ G E E RYIEIWNLVFMQ E+ K + IL P+ +IDTGMG+ER+A Sbjct: 181 EY--GIEGGPEANEDRYIEIWNLVFMQNERGEGTGKSDFEILGPLPRKNIDTGMGIERVA 238 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291 +LQ N Y+ DL + +I A Y ++ V +R+I DH R+++ LI DG+ Sbjct: 239 CLLQGVDNVYETDLLRPVIDAVAARAPRGYGRGSHSDDVRYRIIADHSRTAAILIGDGVS 298 Query: 292 PANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETL 351 P N+GRGYVLRR++RR + A+LLG + ++ L+ + MG +YPEL+ I+ Sbjct: 299 PGNDGRGYVLRRLLRRVIRSAKLLGIDDAVVGDLMATVRDAMGPSYPELVTDFDRIQRIA 358 Query: 352 RSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCAR 408 +E+ F +TL G L + G D L+G AF L+DT+G P+++ ++ Sbjct: 359 VAEETAFNRTLSSGSRLFEEAAQSTKAAGADR-LSGRDAFTLHDTYGFPIELTLEMAAEA 417 Query: 409 GLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKF 468 LA +D F + EQR RA+A + T+ + TQF G+D L Sbjct: 418 DLA-VDEEGFRSLMAEQRQRAKADAAARKQAHTDLTAYRELVDAHPTQFTGFDEL----- 471 Query: 469 MKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQL 528 + ++L G+ + + G + A + ++E+V D++PFYAE+GGQ+ Sbjct: 472 -TTEARIL----------GIFVDGRRVPVVGH--DTATAQHRIELVLDRSPFYAESGGQI 518 Query: 529 GDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 D G G G + ++DVQK A+ ++VH VE G ++ +D + R + Sbjct: 519 ADEGTITGTGASQTAKAAVSDVQKIAKTLWVHRVTVESGEFVEGDTVTAAVDPRWRHGAT 578 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 HS TH++H AL +LG + Q GS P LRFD +T + IE+ N+ + Sbjct: 579 QGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGALTDDQRTQIEEVTNEAVE 638 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 + V + E A + GA AL G Y D VRVV + GG S LCGGTHV S+ + Sbjct: 639 ADFEVHSFTTELEKAKSMGAMALFGEAYPDEVRVVEI----GGPFSLELCGGTHVRSSAQ 694 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIW 764 I + I+ ESS+ +G+RR+EA G + HL + + LAS LKV V RV + Sbjct: 695 IGPVTILGESSVGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVAGLV 754 Query: 765 EEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSH-IISEVDSKELKSVMDALQK 818 E + + + +L ++ V ++ + + + +L++++ ++ Sbjct: 755 ERLKAAEKELDRMRLANARAAAVNAVAGAERVGKVRLVAQRMAGGMSAGDLRTLVGDIRG 814 Query: 819 KIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPH 873 K+ ++ I++ +V VV +DL R N + + + A V G GGG+ Sbjct: 815 KLGGDPAVVALIAEGDNDTVPFVVAVNPAAQDLGLRANEL-VKQFGAAV--NGRGGGKAD 871 Query: 874 MAQSGG 879 +AQ G Sbjct: 872 LAQGSG 877 >gi|164427876|ref|XP_965697.2| alanyl-tRNA synthetase [Neurospora crassa OR74A] gi|38567140|emb|CAE76435.1| probable alanine--tRNA ligase, cytosolic [Neurospora crassa] gi|157071919|gb|EAA36461.2| alanyl-tRNA synthetase [Neurospora crassa OR74A] Length = 961 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 336/966 (34%), Positives = 502/966 (51%), Gaps = 101/966 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQAV 61 +R TFL+FF + GH ++PSSS++P NDPTL+FTN+GM FK IF G ++ + Sbjct: 12 VRKTFLDFFAERGHNVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTEDMAQLKRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W+LLTK + LD Sbjct: 72 VDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIAWSWELLTKVYGLD 131 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 +RLY+T ++ D EA LW ++ G+ D II DNFW M + GPCGPCS Sbjct: 132 PQRLYVTYFEGSPDLGLEPDLEAKNLWLEV-GVPEDHIIPGNMKDNFWEMGDQGPCGPCS 190 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ + GG + + + +E+WN+VF+QF++Q + LP IDTGMG Sbjct: 191 EIHYDK---VGGGRNAAHLVNMDDPLVVEVWNIVFIQFDRQADKSLKSLPAKHIDTGMGF 247 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281 ER+ + LQ+KT+NY D+F L ++VTG KY +++ +RVI DH+R Sbjct: 248 ERLVSALQDKTSNYATDIFTPLFTKIQEVTGAREYTDKYGKDDVDGIDTAYRVIADHIRL 307 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 SF IADG P N GRGYV+RR++RR + YAR E +LPAL +MG +PE Sbjct: 308 LSFAIADGAAPNNVGRGYVVRRVLRRGVRYARKYFNAEIGTFFSKILPALVEQMGEQFPE 367 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTHGLP 397 L++ + I+E L E+ F TLDRG + L+ ++ L+G ++LYDT G P Sbjct: 368 LVKKQTDIKEILDEEEVAFAVTLDRGEKQFEKYAALAIKSGEKKLSGADVWRLYDTFGFP 427 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 D+ + + RGL ID N+A R +AR S + E + L A Sbjct: 428 EDLTKLMAEERGLT-IDEAEVNEA----REKAREASKAVKEAVQE--FAKLNVHQIAELE 480 Query: 458 IGYDLLR---GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 ++ R +KF+K D K Q + NG + + ++ + + ++ Sbjct: 481 TALNIPRPNSDAKFLKGDTKGKVQL----IFNGKEFLKSS--------KDLPAKTPLGLL 528 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D T FYAE+GGQ+ DTG I DG+ ++ DVQ+ G VH+ +E G L +V Sbjct: 529 LDNTNFYAESGGQVADTGRIIIDGVAEFKVLDVQEYG-GYIVHNGFLEYGELTEGDEVVC 587 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R+ + NH+ TH+L+H+L +LG ++Q GS + D LRFD +H I+ ++K Sbjct: 588 EYDELRRQPIRNNHTGTHILNHSLREVLGDEINQKGSLVDQDKLRFDFSHKAAISLEDIK 647 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-------- 684 IED N I QNL ++ ++ + A G A+ G Y + VRVVS+ E Sbjct: 648 KIEDLSNHYIRQNLKAYSKDVDLDLAREIEGVRAVFGETYPNPVRVVSIGMEVDELLKNP 707 Query: 685 ---DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQ 738 + S CGGTHV +TG I L IV ES I GIRRI A TG+ +A+ Sbjct: 708 KNPEWRKISVEFCGGTHVENTGLIKDLIIVEESGIAKGIRRIVAYTGEGAHQAQREAQVF 767 Query: 739 DEKLKSL---------ASFLKVSQGNVVGRV------EEIWEEYRKLQ--LIHAKRKLQ- 780 +EKL + A+ +K + + G EE+ + K+Q ++ ++K Q Sbjct: 768 NEKLNHINALAYGPQKAAEIKAAAVELDGLTISVLTKEELRTRFTKIQKEVVDEQKKRQK 827 Query: 781 ----LNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGIS 831 ++ ++ H D N F+ H+ ++K + V+ + K + + + S Sbjct: 828 AESKTALDTVASHFQKDENKESKVFVGHLPISANAKAISDVITYYKTKDKERSVYVFAGS 887 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K+ + + V L + A + V+GG GG P Q G K ++A+ Sbjct: 888 KDDQVMHGVYVGTALSSKGVTAEQWTSAVSAVIGGKTGGKEPSR-QGAGAEPEKLEEAVK 946 Query: 891 GVASFL 896 +L Sbjct: 947 KAEEWL 952 >gi|182415646|ref|YP_001820712.1| alanyl-tRNA synthetase [Opitutus terrae PB90-1] gi|205830166|sp|B1ZZ40|SYA_OPITP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|177842860|gb|ACB77112.1| alanyl-tRNA synthetase [Opitutus terrae PB90-1] Length = 937 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 321/933 (34%), Positives = 460/933 (49%), Gaps = 150/933 (16%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA---- 60 + IR +FL+FF + GH ++PSSSL+P + P L+FTN+GM F IF G P Sbjct: 4 AEIRQSFLDFFARQGHTIVPSSSLLP-DSPGLLFTNAGMNQFVPIFLGDRAPDVSKWAGA 62 Query: 61 -------VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 QKC+RAGGKHNDL++VG HHT FEMLGN+SFG YFK+ +I W+L Sbjct: 63 RPAKDTRAADTQKCIRAGGKHNDLEDVGFDTYHHTMFEMLGNWSFGDYFKKESITWGWEL 122 Query: 114 LTKEFDLDQRRLYITVY----------DEDEEAFKLWK---KISGL-SADKIIRITTNDN 159 +TK + + +RL+ TVY D D+EA+ +W K GL A I+ DN Sbjct: 123 ITKVWGIPAKRLFATVYSPDKSKNDPSDFDQEAYDIWAGVFKKEGLDPAVHIVHGNKKDN 182 Query: 160 FWSMAETGPCGPCSEIFFDQGECIPGGLPGSSE-EGE--------RYIEIWNLVFMQFEQ 210 FW M +TGPCGPCSEI F+ LP E EG R IEIWN VF+QF Sbjct: 183 FWMMGDTGPCGPCSEIHFNL-------LPSDDEVEGRKLVNAGVPRCIEIWNHVFIQFNA 235 Query: 211 QNKQERFILPKMSIDTGMGLERMATV---------LQEKTNNYDIDLFKHLIQASEQVTG 261 L +DTGMG ER+A + +NY+ D+F L E+++ Sbjct: 236 NADGTFSPLAAKHVDTGMGFERVAGIYATTKGFKDFSRDPSNYNADVFAPLFAKIEELSK 295 Query: 262 MKYEGN------------NI-VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308 Y G NI + RV+ DH R S IAD ILP NEGR YV+RRI+RR Sbjct: 296 KTYNGTVPTRREGLGEQENIDIAFRVLADHARCVSCAIADNILPGNEGRNYVIRRILRRG 355 Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGL-- 366 + Y + L L+ + +G+ +PEL + + +I +RSE+E FG+TL++GL Sbjct: 356 ILYGKKLNLATGFFEQLVAPVVESLGAVFPELKERQDIIRRVIRSEEESFGRTLEKGLQL 415 Query: 367 ------VLLD-------------GVLSHLGK-DEILNGDVAFKLYDTHGLPLDIMQDILC 406 +LLD G ++++G L G F+LYDT+G P+D+ Q + Sbjct: 416 FNEGAKLLLDAHPIKGQADVPGVGTITNIGGVTRFLGGKFVFRLYDTYGFPVDMTQLLAT 475 Query: 407 ARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----EKYGATQFIGYDL 462 RGLA ++++ F +++Q+ R+RA + E I + + E T+FIGYD Sbjct: 476 ERGLA-VNMVEFASEMQQQQDRSRA------AQKKEVIVAATEGDNTEAAQPTKFIGYDR 528 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 L D +VL +VK + + + +VFDQTPFYA Sbjct: 529 LTA------DAQVL-------------DVVK-------------TDKDLFLVFDQTPFYA 556 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHH------AIVERGILRTEMSLVLTID 576 E GGQ GD G DG I K G F+H A V R + L + Sbjct: 557 EMGGQTGDHGVVKIDGQTFAILATVKDKAGRFLHKLAPACAADVAR-LNPVGKKAALGVS 615 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 RR +S +HSA HL+H AL LG+HV Q G+ T + +RFD TH + +T ++ +E Sbjct: 616 PLARRAISRHHSAEHLVHWALRKTLGTHVRQAGTSKTKERMRFDFTHFEALTPEQIAEVE 675 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 VN I N V D G A G KY VRVV + G +S LCGG Sbjct: 676 RLVNSKILSN-DKVEAYETEFDKKPEGTLAFFGEKYGKIVRVVDI-----GGYSRELCGG 729 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THVS+T EI L IV+E +I AG RR+EA+ GQ A + + LK++ L +V Sbjct: 730 THVSTTSEIGLFKIVAEMAIAAGTRRLEAVAGQAAYDFVEEHETALKAVTHKLNAGPQDV 789 Query: 757 VGRVEEIW----EEYRKLQLIHAKRKLQLNVEDLSCHKIA--DVNFMSHIISEVDSKELK 810 +++ + E +KL+ K L ++L+ A + F++ +S + L+ Sbjct: 790 AQKLDSLLAHQKELEKKLKAYEQKAAAGL-ADELAAKATARDGLKFVTATVSIDNQDALR 848 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 S+ + K+ G++ L G + +AS+++ + Sbjct: 849 SLGSQVLHKLGEGVVTL-GAALGDRASLVVYCS 880 >gi|327330410|gb|EGE72159.1| alanine--tRNA ligase [Propionibacterium acnes HL097PA1] Length = 892 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 313/926 (33%), Positives = 478/926 (51%), Gaps = 72/926 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD V + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VEVV +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEVVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA GA A+ G KY VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKVMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|242085328|ref|XP_002443089.1| hypothetical protein SORBIDRAFT_08g008230 [Sorghum bicolor] gi|241943782|gb|EES16927.1| hypothetical protein SORBIDRAFT_08g008230 [Sorghum bicolor] Length = 1006 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 284/767 (37%), Positives = 405/767 (52%), Gaps = 71/767 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R ++ FF H PSS ++P +DPTL+F N+GM +K +F G P + +A Sbjct: 64 VREQYISFFVSKEHTRWPSSPVVPVDDPTLLFANAGMNQYKPVFLGTAAPDSPLGRLRRA 123 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLT+ + L Sbjct: 124 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTQVYKL 182 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y T + DE E+ +W K L +K++ + DNFW M +TGPCGPC Sbjct: 183 PTDRVYATYFGGDEKSGLAADVESKNIWLKY--LPKEKVLPFGSKDNFWEMGDTGPCGPC 240 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EI FD+ G L + + IEIWNLVF+QF ++ LP +DTGMG E Sbjct: 241 TEIHFDRIGNRDAASLVNNDD--PTCIEIWNLVFIQFNREADGSLRPLPAKHVDTGMGFE 298 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEG----NNI----VNHRVIVDHLR 280 R+ ++LQ K +NYD D+F + A Q+ G Y G ++I + +RV+ DH+R Sbjct: 299 RLTSILQNKMSNYDTDVFMPIFDAIHQLAGDGIQPYSGKVGSDDIGKVDMAYRVVADHIR 358 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + SF IADG P NEGR YVLRRI+RRA+ + + L + L+ MG +PE Sbjct: 359 TLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLKAKQGFFSSLVNVFVQLMGDVFPE 418 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLL----DGVLSHLGKDEILNGDVAFKLYDTHG 395 L + I++ +R E+E F TL +G D V + G +L+G AF L+DT+G Sbjct: 419 LKDNEKKIKDIIRDEEESFENTLAKGYEKFKKAADAVKDNGGT--VLSGQDAFVLWDTYG 476 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + GL +D FN ++EE R +AR + + K G Sbjct: 477 YPIDLTEVMAIDYGLT-VDKEGFNASMEEARQKAR----------------NARNKSGGK 519 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 I D + K+ P S+VKAI E + A + +V Sbjct: 520 S-IALDANATAHLRKQGLASTDDNPKFLWPKEHESVVKAIYTGSEYITTATGDEDFGLVL 578 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG--ILRTEMSLVL 573 + T FYAE GGQ+ DTG G + +VQ A G +H +G +L S++ Sbjct: 579 ESTSFYAEQGGQIFDTGSIEGSFGTFNVNNVQVFA-GYVLHIGSFAKGSKVLSLGDSVIC 637 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +DY R ++ NH+ TH+L+ AL +LG HV Q GS + P+ LRFD +H KP+ +L+ Sbjct: 638 KVDYNRRTLIAPNHTCTHMLNFALREVLGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDLR 697 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV----------- 681 IE VN I L V + EDA +G A+ G Y D VRVVSV Sbjct: 698 KIESIVNQQIKDELGVYALEIKLEDAKRINGLRAVFGEIYPDPVRVVSVGRKVEDLLADP 757 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 + ++ S+ LCGGTH+++T + ++SE I G+RRI A+T Sbjct: 758 DSKEWLSISTELCGGTHITNTRDAKAFALLSEEGIAKGVRRITAVTA 804 >gi|315108664|gb|EFT80640.1| alanyl-tRNA synthetase [Propionibacterium acnes HL030PA2] Length = 892 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 312/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDG--VLSHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD V + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VE+V +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G KY VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDVVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + +AQ G + D A+ V + L Sbjct: 864 KDDIAQGAGSDPTGIDAALRAVNTKL 889 >gi|302838115|ref|XP_002950616.1| hypothetical protein VOLCADRAFT_120886 [Volvox carteri f. nagariensis] gi|300264165|gb|EFJ48362.1| hypothetical protein VOLCADRAFT_120886 [Volvox carteri f. nagariensis] Length = 1143 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 293/809 (36%), Positives = 420/809 (51%), Gaps = 95/809 (11%) Query: 8 RTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGM-------------------VP--- 45 R F EFF+ H SSS++P NDPTL+FTN+GM +P Sbjct: 183 RAAFNEFFETKAHTYWASSSVVPHNDPTLLFTNAGMNQASDQSQGQANWQHHHAYLPHSW 242 Query: 46 FKNIFTGQEKP-----VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG 100 FK +F G P + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG Sbjct: 243 FKPVFLGTVDPNSDMGKLKRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGD 302 Query: 101 YFKERAIQLAWDLLTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKII 152 YFKE AI AW+LLTK + L RLY T + D+EA ++W + L +++ Sbjct: 303 YFKEEAISWAWELLTKWYKLPADRLYATYFRGDPGQGLPADDEAREIWLRF--LPESRVL 360 Query: 153 RITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFE 209 +NFW M + GPCGPC+EI FD+ GG + + + +EIWN VF+QF Sbjct: 361 PYGNKENFWEMGDQGPCGPCTEIHFDR----IGGRDAADLVNADDPNVLEIWNNVFIQFN 416 Query: 210 QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI 269 ++ LP +DTGMGLER+ +VLQ K +NY DLF + A +QVTG + + I Sbjct: 417 REPDGTLKTLPAKHVDTGMGLERITSVLQGKMSNYATDLFGPIFDAIQQVTGARTYTDKI 476 Query: 270 ---------VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTE 319 + +RV+ DH+R+ SF IADG P NEGR YVLRRI+RRA+ Y R LG E Sbjct: 477 GKEDADGVDMAYRVVADHIRTLSFSIADGARPGNEGRDYVLRRILRRAVRYGRETLGAKE 536 Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379 L+ + G +PEL++ + I LR E+ F +TL +G+ S D Sbjct: 537 GFFAGLVDVVVANFGGFFPELVKQRDTIYSVLREEEAAFSRTLVKGIERFKKAAS-AATD 595 Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439 + G AF L+DT+G P+D+ Q + RG+ +D+ ++ AL E R ++R Sbjct: 596 NKIPGYEAFVLWDTYGFPVDLTQLMAEERGMT-VDMPAYEAALNEAREKSRQGG------ 648 Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499 K A I ++ + +++ + L P ++ VS+ V AI+ G Sbjct: 649 -----------KKAAGAGIKFE-AEATGWLQSNGVPLTNDAPKYGSSDVSAKVLAILTPG 696 Query: 500 EIV----EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG-DGIRLQITDVQKKAEGIF 554 V E A V +V D T FYAE+GGQ+GDTG G +G L ++D Q A G Sbjct: 697 GFVASTSEAADQDGPVGLVLDTTSFYAESGGQIGDTGAIRGPEGAALVVSDCQVAA-GFV 755 Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614 +H R + +++DY+ R + NH+ TH+L+ AL + LG HV Q GS + P Sbjct: 756 LHVGEASVAPFRVGDEVTVSVDYERRSLIKPNHTFTHVLNFALKSTLGDHVDQKGSIVLP 815 Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYN 673 D LRFD +++ P+ + +L ++E + +A +PV + + A + +G A+ G Y Sbjct: 816 DKLRFDFSNAGPVEANQLAAVEKICREAVAAAMPVHSGEVPLAQARSINGLRAVFGEVYP 875 Query: 674 DRVRVVSV---------EYEDG--GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 D VRVVS+ + +D S CGGTH+S+T E ++SE I GIRR Sbjct: 876 DPVRVVSIGRAVEELLADPKDAANAAFSIEFCGGTHLSNTSEAEAFALLSEEGIAKGIRR 935 Query: 723 IEAIT-GQRARSHLMGQDEK--LKSLASF 748 I A+T G R+ D K L S+A+ Sbjct: 936 IVAVTRGDAVRAIEAAADLKAELASIATL 964 >gi|254581276|ref|XP_002496623.1| ZYRO0D04378p [Zygosaccharomyces rouxii] gi|238939515|emb|CAR27690.1| ZYRO0D04378p [Zygosaccharomyces rouxii] Length = 956 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 318/970 (32%), Positives = 492/970 (50%), Gaps = 103/970 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 +++R FL+FF+ H+ + SS ++P +DPTL+F N+GM +K IF G P Sbjct: 11 ATNVRKAFLDFFKSKDHKFVASSPVVPYDDPTLLFANAGMNQYKPIFLGTVDPSSDFYHL 70 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI AW+LLTK + Sbjct: 71 KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKQGAISYAWELLTKVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L RLY+T ++ D EAF+LWK + G+ I+ DNFW M + GPCG Sbjct: 131 GLPADRLYVTYFEGDPKNGLEADMEAFELWKSV-GVDESHILPGNAEDNFWEMGDQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI FD+ GG +S + +E+WNLVFMQF ++ LP IDTG Sbjct: 190 PCSEIHFDR----IGGRNAASLVNMDDPDVLEVWNLVFMQFNREQDGSLKPLPAKHIDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278 MG ER+ ++LQ+ +NYD D+F L +VTG++ Y G + I +RV+ DH Sbjct: 246 MGFERVVSILQDYRSNYDTDVFTPLFARIHEVTGVRPYAGKFGAEDTDGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ F IADG +P NEGRGYVLRRI+RR +AR + Y L+P L +++ Sbjct: 306 VRTLVFAIADGGVPNNEGRGYVLRRILRRGARFARKYMNYPIGDFFSRLVPTLISQVQDI 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD---GVLSHLGKDEILNGDVAFKLYDT 393 +PE+ + + E L E+ F KTLDRG L + + GK + L+G ++LYDT Sbjct: 366 FPEVAKDPSYLFEILNEEEVSFAKTLDRGERLFEKYADAATSSGK-KTLDGLQVWRLYDT 424 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G P+D+ + + +GL ID F +A +E ++ K Sbjct: 425 YGFPVDLTELMAEEKGLT-IDGPGFEKAKQESYEASKRGG-----------------KKD 466 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 + + ++ S+ E+ + + N S+I+K + E + G+K V Sbjct: 467 GAEVLKLNVHEISELNGENVPKTKDEYKYGMENVDSTILKLHDGTKFVNEISEPGKKYGV 526 Query: 514 VFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG I D + +VQ G H + G L ++ Sbjct: 527 ILDKTCFYAEQGGQEYDTGKLVIDDVAEFNVENVQ-LYNGFVFHTGSLLEGKLSVGNKII 585 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 + D R + NH+ TH+L+ AL +LG+ + Q GS + P+ LRFD +H K + + E+ Sbjct: 586 ASYDELRRFPIKNNHTGTHILNFALREVLGNDIEQKGSLVAPEKLRFDFSHKKGMAADEI 645 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---------- 681 +ED N I +N+ V + + DA + G A+ G Y D VRVVSV Sbjct: 646 LKVEDICNKQIKENMSVYYKDVPLTDAKSIYGVRAVFGETYPDPVRVVSVGKSVDDLLAN 705 Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 E+ +S CGGTHV TG+I + I+ ES I GIRRI A+TG A +E Sbjct: 706 PSNEEWSKYSVEFCGGTHVVKTGDIKVFVILEESGIAKGIRRIVAVTGSEAYEAQRIANE 765 Query: 741 -------------------KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI-------H 774 KLK L+ L +VV + +E+ ++ K++ + Sbjct: 766 FDKELNAVDRLPFSPLKEKKLKELSVKLGQLSISVVSK-QELKTKFAKIEKVVKDEIKTR 824 Query: 775 AKRKLQLNVEDLSCH--KIADVNFMSHIIS-EVDSKELKSVMDALQKKIQS-GIIMLVGI 830 AK++ + ++++ + K + F++ + ++K + ++ ++ + I + G Sbjct: 825 AKQESKKTLDEVKEYFAKNENSQFLAKFVDIPTNAKAITEAVNYVKSSAKDKSIYLFTGN 884 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGGGGRPHMAQSGGPNGNKADQA 888 E K + +++ L + +D + ++ +V G GG GGR ++ Q G A A Sbjct: 885 DPEGKIAHGCYISDAALSK--GIDGSTVAKQVSGIIGGKAGGRGNVFQGMGDKPTAAGDA 942 Query: 889 IAGVASFLKK 898 +A V K+ Sbjct: 943 VAEVEKLFKE 952 >gi|327443563|gb|EGE90217.1| alanyl-tRNA synthetase [Propionibacterium acnes HL013PA2] Length = 892 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 312/926 (33%), Positives = 478/926 (51%), Gaps = 72/926 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VE+V +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G KY VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ V +L+++ Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKAPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|313764300|gb|EFS35664.1| alanyl-tRNA synthetase [Propionibacterium acnes HL013PA1] gi|313816208|gb|EFS53922.1| alanyl-tRNA synthetase [Propionibacterium acnes HL059PA1] gi|313827649|gb|EFS65363.1| alanyl-tRNA synthetase [Propionibacterium acnes HL063PA2] gi|314915290|gb|EFS79121.1| alanyl-tRNA synthetase [Propionibacterium acnes HL005PA4] gi|314918160|gb|EFS81991.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA1] gi|314920236|gb|EFS84067.1| alanyl-tRNA synthetase [Propionibacterium acnes HL050PA3] gi|314931759|gb|EFS95590.1| alanyl-tRNA synthetase [Propionibacterium acnes HL067PA1] gi|314955561|gb|EFS99962.1| alanyl-tRNA synthetase [Propionibacterium acnes HL027PA1] gi|314958056|gb|EFT02159.1| alanyl-tRNA synthetase [Propionibacterium acnes HL002PA1] gi|314967492|gb|EFT11591.1| alanyl-tRNA synthetase [Propionibacterium acnes HL037PA1] gi|315098688|gb|EFT70664.1| alanyl-tRNA synthetase [Propionibacterium acnes HL059PA2] gi|315101309|gb|EFT73285.1| alanyl-tRNA synthetase [Propionibacterium acnes HL046PA1] gi|327450628|gb|EGE97282.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA3] gi|327454034|gb|EGF00689.1| alanyl-tRNA synthetase [Propionibacterium acnes HL083PA2] gi|328753292|gb|EGF66908.1| alanyl-tRNA synthetase [Propionibacterium acnes HL025PA2] gi|328754046|gb|EGF67662.1| alanyl-tRNA synthetase [Propionibacterium acnes HL087PA1] Length = 892 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 311/926 (33%), Positives = 479/926 (51%), Gaps = 72/926 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VE+V +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ+ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQRPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G KY VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + +AQ G + D A+ V + L Sbjct: 864 KDDIAQGAGSDPTGIDAALRAVNTEL 889 >gi|156839933|ref|XP_001643652.1| hypothetical protein Kpol_1040p7 [Vanderwaltozyma polyspora DSM 70294] gi|156114272|gb|EDO15794.1| hypothetical protein Kpol_1040p7 [Vanderwaltozyma polyspora DSM 70294] Length = 956 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 280/767 (36%), Positives = 418/767 (54%), Gaps = 66/767 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62 +R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P + T Sbjct: 14 VRNTFLDYFKSKEHKFVRSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPSSEFYTLKRA 73 Query: 63 -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ A++ +W+LLT+ + + Sbjct: 74 YNSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAVEYSWELLTQVYSIP 133 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ DE EA +LW+ + G+ D I+ DNFW M E GPCGPCS Sbjct: 134 ADRLYVTYFEGDEKQGLEPDHEARELWRSV-GVPDDHILPGNAKDNFWEMGEQGPCGPCS 192 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +E+WNLVFMQ+ ++ + LP IDTGMG Sbjct: 193 EIHYDR----IGGRNAAHLVNQDDPDVLEVWNLVFMQYNREQDRSLKSLPAKHIDTGMGF 248 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281 ER+ +VLQ+ +NYD D+F+ L +A +++ + K+ ++ +RV+ DH+R+ Sbjct: 249 ERLVSVLQDVRSNYDTDVFQPLFKAIQEIANVRPYTGKFGAEDVDGIDTAYRVLADHVRT 308 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAYPE 339 +F +ADG +P NEGRGYVLRRI+RR YAR + Y L+P L ++ +PE Sbjct: 309 LTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSRLMPTLIEQVKDIFPE 368 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLP 397 + + + E L E+ F KTLDRG L + + + E L+G ++LYDT+G P Sbjct: 369 VAKDPSFVAEILDEEEASFSKTLDRGEKLFEKYAAAASQTESKTLDGKQVWRLYDTYGFP 428 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + + +GL ID F +A +E A G ++ + ++ E Sbjct: 429 VDLTELMAEEQGLK-IDGPGFEKAKQES---YEASKRGGKKDNSDLLKLNVHE------- 477 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 L K K D K D +G +I+K + + E G+K ++ D Sbjct: 478 --LSQLNEEKIAKSDD---SSKYGFDNVDG--TILKLYDGEQFVDEITEPGKKYGIILDN 530 Query: 518 TPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE GGQ DTG I D + + +VQ +F ++VE G L ++ D Sbjct: 531 TCFYAEQGGQEYDTGKIIIDDVAEFNVENVQLYNGYVFHTGSLVE-GKLSVGDKIIAAYD 589 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R + NH+ TH+L++AL LG+ V Q GS + P+ LRFD +H K ++ EL+++E Sbjct: 590 ELRRHPIKNNHTGTHILNYALKETLGNDVDQKGSLVAPEKLRFDFSHKKALSLDELRNVE 649 Query: 637 DNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV-----------EYE 684 + N I N+ V + + + A S A+ G Y D VRVVSV E Sbjct: 650 EVCNQQIKDNMAVYYKEVPLDLAKTISSVRAVFGETYPDPVRVVSVGKPIDEILANPSNE 709 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + +S CGGTHVS TG+I I+ ES I GIRRI A++G A Sbjct: 710 EWNKYSIEFCGGTHVSKTGDIKYFIILEESGIAKGIRRIVAVSGTDA 756 >gi|290986366|ref|XP_002675895.1| alanyl-tRNA synthetase [Naegleria gruberi] gi|284089494|gb|EFC43151.1| alanyl-tRNA synthetase [Naegleria gruberi] Length = 957 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 312/960 (32%), Positives = 491/960 (51%), Gaps = 108/960 (11%) Query: 7 IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60 IR F+EFF+K H +PSSS++P DPTL+FTN+GM FK IF GQ P + Sbjct: 20 IRKQFVEFFEKKYEHTFVPSSSVVPHEDPTLLFTNAGMNQFKAIFLGQASPDSSLAKLKR 79 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AI AW+LLT+ + L Sbjct: 80 AANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKREAITWAWELLTEVYGL 139 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 ++ RLY+T + DEEA ++W + + D I+ + DNFW M +TGPCGPC Sbjct: 140 EKDRLYVTYFGGNEKLNLPADEEAKQIWGQF--VPDDHILPGSMKDNFWEMGDTGPCGPC 197 Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI +D+ GG + + + +EIWN VFM+F ++ Q LP +DTGMG Sbjct: 198 SEIHYDR----IGGRNAAHLVNMDDPNVLEIWNNVFMEFNRKEDQTLEYLPAKHVDTGMG 253 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN---NIVNH-----RVIVDHLR 280 LER+ ++LQ K +NYD D+F + +A ++ TG + Y G V+H RVI DH+R Sbjct: 254 LERLVSILQNKMSNYDTDVFMPIFEAIQKETGSRPYTGKLGAEDVDHIDTAYRVIADHIR 313 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + ++DG P N GRGYVLRRI+RRA+ + + + + L + MG +PEL Sbjct: 314 TLVIALSDGGYPDNTGRGYVLRRIVRRAVRFGEFMNAKKGFLTRLASCVVELMGDFFPEL 373 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPL 398 + +EE ++SE+ F KTL GL + + + + +++G AFKLY T+G P+ Sbjct: 374 KKNSEKVEELIQSEEVLFAKTLRVGLKFFNRIAEKMKSNGESVVSGPDAFKLYATYGFPV 433 Query: 399 DIMQDILCARGLAGIDIISFNQALEE-----QRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 D+ + +G+ +D++ + + +E+ Q ++ A + LG T+K+ LK Sbjct: 434 DLTLIMAQEQGMT-VDMVEYKKEMEKHATASQGTKQEATDMKLGVIETDKLQNELK--IE 490 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 TQ K++ E+ Q + + + S V+ + + E V + + Sbjct: 491 PTQ-------DDIKYVWEN----IQAKVVAIFSESSGFVEELNTECEEV-------NIGI 532 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 + DQT FYAE GGQ D G L++ +VQK A G +H V L +++ Sbjct: 533 ILDQTNFYAEGGGQAPDNGVLRIGETELKVVNVQKFA-GYILHIVNVSESKLAGNVTVGT 591 Query: 574 TI----DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 T+ +Y+ R ++ NH++TH+L+ AL +LG+ Q GS + + L FD + +K + Sbjct: 592 TVSSEVNYERREPIAANHTSTHMLNFALRKVLGTDCDQQGSIVKEEELCFDFSAAKAPSV 651 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGV 688 ++ +E VND+I + PV +++ R+ A +G A+ Y ++VRVVS+ + + Sbjct: 652 EQVAEVEKIVNDLIVADHPVFSKVQERDAAYEINGLRAMFSANYGEQVRVVSIGQDSDSI 711 Query: 689 H-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG 737 S CGGTH+ T + I+SE SI G RRI A+T + A+ + Sbjct: 712 MTDRSNEKWRLISVEFCGGTHLKQTSQAQTFVILSEKSISTGKRRIVALTRKAAKEAVER 771 Query: 738 QDEKLKSLASFLKVSQGNVVGRVEEIWEEY---------------RKLQLIHAK-RKLQL 781 + + K+S R E+ E ++L+ K RK+Q Sbjct: 772 AQKFSVKIDELEKLSDELFCPRYYELTSELTLLTDIPLLSKKAFEKRLEACQTKVRKIQQ 831 Query: 782 NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--------KKIQSGI----IMLVG 829 + + K +S + ++ K LKS++ L+ KK+ + + L+ Sbjct: 832 SQKKDDAEKAN--QLISQLKESIEQKSLKSLVYQLEDGSDQKFVKKVIDALTTIPVCLIS 889 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + +K VL V ++ +A KV+ G GGG+P AQ G + +K +A+ Sbjct: 890 KADDKTIIVLASVPQEQTATLSANTWVTEVCKVV-SGKGGGKPIFAQGRGSDVSKVAEAV 948 >gi|313791987|gb|EFS40088.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA1] gi|313802063|gb|EFS43297.1| alanyl-tRNA synthetase [Propionibacterium acnes HL110PA2] gi|313838884|gb|EFS76598.1| alanyl-tRNA synthetase [Propionibacterium acnes HL086PA1] gi|314962643|gb|EFT06743.1| alanyl-tRNA synthetase [Propionibacterium acnes HL082PA1] gi|315077859|gb|EFT49910.1| alanyl-tRNA synthetase [Propionibacterium acnes HL053PA2] gi|327453294|gb|EGE99948.1| alanyl-tRNA synthetase [Propionibacterium acnes HL092PA1] Length = 892 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 312/926 (33%), Positives = 478/926 (51%), Gaps = 72/926 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + I F++FF+ GH ++PS+SL+ NDPTL+F N+GMVPFK G E ++ T+ Sbjct: 3 TAEIGQRFVDFFESKGHTVVPSASLL-YNDPTLLFVNAGMVPFKPYLMGTEPSPWKRATS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD---- 119 +QKCVR D+D VG+T RH TFF+MLGNFSFG YFK AIQ AW+L+TK + Sbjct: 62 IQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSFGDYFKNEAIQYAWELVTKPAEQGGL 117 Query: 120 -LDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 D +++TV Y E D EA + W+ +G+ ++I + DN+W M GP Sbjct: 118 GFDPASIWVTVLGPGFHPDYPEGDIEAREAWRA-AGIPDEQIQGRSLKDNYWHMGVPGPG 176 Query: 170 GPCSEIFFDQGECI-PGGLPGSSEEGERYIEIWNLVFM--QFEQQNKQERF----ILPKM 222 GPCSEI+ D+G P G P + E+ RY+EIWNLVF ++ F L + Sbjct: 177 GPCSEIYIDRGPAYGPDGGPEADED--RYLEIWNLVFETEDLSAVRAKDDFDIAGPLRSL 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG--NNIVNHRVIVDHLR 280 +IDTG GLER+A +LQ N Y+ D +I+ + +++G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIAYLLQGVDNMYETDQVFPVIEKASEMSGKRYGARHDDDVRLRVVADHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 S L+ DG+ P NE RGYVLRR++RR + RLLG +P++ LL M ++P++ Sbjct: 295 SGLMLMTDGVTPGNEARGYVLRRLLRRVVRAMRLLGVADPVLPELLSVSRDLMADSFPDV 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPL 398 + + +E++ F +TL G +LD + + + L+G+ AF+L+DT+G P+ Sbjct: 355 LTQWDRVIGAATAEEDTFRRTLSSGTAMLDAAVVETKASGSKTLSGEKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ ++ +GL +D F + EQR+RA+A S T++ +S G T F+ Sbjct: 415 DLTLEMAAEQGLE-VDRNKFTALMAEQRARAKADSQAKKGLLTDREAYSQVRALGETPFL 473 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 GY V + V I+ G V A G VE+V +T Sbjct: 474 GY-----------------------TDLTVDTTVTGIIANGTSVTAAEPGAVVEIVLAET 510 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 PFYAE GGQ D+G +GI ++ DVQ G+ VH ++ G L + ++ Sbjct: 511 PFYAEMGGQDSDSGIIRANGIDFEVLDVQCPVPGLIVHKVHLD-GDLAVGDRVTALVNPA 569 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATH++H AL ++G +Q GS P LRFD + +K ++ + IE+ Sbjct: 570 TRFGACQAHTATHVIHAALRELVGPSATQAGSYNKPGYLRFDFSATKGLSDSLKDEIEER 629 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 N I + V M EDA A GA A+ G KY VRVV E G S LCGGTH Sbjct: 630 CNVAIHDDFEVTDTQMPLEDAKAMGAMAMFGEKYPPIVRVV----ELAGPWSRELCGGTH 685 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVG 758 V+STG I +L ++ E S+ +G RR+EA+ A H+ + + L LKV + Sbjct: 686 VASTGRIGMLSLLGEQSVGSGTRRVEALVSTDAFRHMAAERALVNELTGILKVQPDQLAD 745 Query: 759 RVE----EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNF--MSHIISEVDSKELKSV 812 RV ++ E RKL R+L V+D+ +F ++ + V +L+++ Sbjct: 746 RVSKLAADLKEAERKLGAART-RELLGQVDDIVAGTTPAGSFDLVAAKVPGVAGSDLRTL 804 Query: 813 MDALQKKIQ--SGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ +++ ++ L+G + +K A ++ A L ++ + GG GGG Sbjct: 805 AAEIRARVKDRPAVVTLIGGTHDKPAMIVATTESARAAGAKAGALIKVGVAPI-GGRGGG 863 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFL 896 + MAQ G + D A+ V + L Sbjct: 864 KDDMAQGAGSDPTGIDAALRAVNTEL 889 >gi|62897207|dbj|BAD96544.1| alanyl-tRNA synthetase variant [Homo sapiens] Length = 968 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 297/801 (37%), Positives = 430/801 (53%), Gaps = 72/801 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + +ADG P N GRGYVLRRI+RRA+ YA L + L+ + +G A Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ I +GL +D+ F EE+R A+ S G G+G + I + Y + Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472 Query: 457 FIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 RG + + K L N V++++ A+ ++ VEE +GQ+ V Sbjct: 473 LRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVSTGQECGV 527 Query: 514 VFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 V D+T FYAE GGQ+ D G + D + + Q + G +V H G L+ Sbjct: 528 VLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKV 585 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T + Sbjct: 586 GDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAM 644 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681 ++ ++K E+ N++I V T+ A A G A+ Y D VRVVS+ Sbjct: 645 STQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVS 704 Query: 682 EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L Sbjct: 705 ELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL 764 Query: 736 MGQDEKLKSLASFLKVSQGNV 756 K +SL L V + V Sbjct: 765 ----RKAESLKKCLSVMEAKV 781 >gi|26336489|dbj|BAC31927.1| unnamed protein product [Mus musculus] Length = 968 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 293/795 (36%), Positives = 426/795 (53%), Gaps = 80/795 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 10 IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF + Sbjct: 70 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPCGPCS Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPCGPCS 188 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVF+Q+ +++ LPK SIDTGMGL Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH R+ Sbjct: 245 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I +GL +D+ F EE+R A+ S G G+G + I + Sbjct: 425 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511 + LR D P + + S + V A+ ++ V+E V+GQ+ Sbjct: 471 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565 VV D+T FYAE GGQ+ D G + D + + Q + G +V H G L Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 + + L ID RR + NH+ATH+L+ AL ++LG Q GS +TPD LRFD T Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVTPDRLRFDFTAKG 642 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681 +++ ++K E+ VN +I PV T+ A A G A+ Y D VRVVS+ Sbjct: 643 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702 Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ Sbjct: 703 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762 Query: 734 HLMGQDEKLKSLASF 748 L + KSL++ Sbjct: 763 ALRKSETLKKSLSAM 777 >gi|109148542|ref|NP_001596.2| alanyl-tRNA synthetase, cytoplasmic [Homo sapiens] gi|115502460|sp|P49588|SYAC_HUMAN RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; AltName: Full=Renal carcinoma antigen NY-REN-42 gi|15079238|gb|AAH11451.1| Alanyl-tRNA synthetase [Homo sapiens] gi|119572224|gb|EAW51839.1| alanyl-tRNA synthetase, isoform CRA_b [Homo sapiens] gi|123981462|gb|ABM82560.1| alanyl-tRNA synthetase [synthetic construct] gi|123996297|gb|ABM85750.1| alanyl-tRNA synthetase [synthetic construct] Length = 968 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 297/801 (37%), Positives = 430/801 (53%), Gaps = 72/801 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + +ADG P N GRGYVLRRI+RRA+ YA L + L+ + +G A Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ I +GL +D+ F EE+R A+ S G G+G + I + Y + Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472 Query: 457 FIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 RG + + K L N V++++ A+ ++ VEE +GQ+ V Sbjct: 473 LRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVSTGQECGV 527 Query: 514 VFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 V D+T FYAE GGQ+ D G + D + + Q + G +V H G L+ Sbjct: 528 VLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKV 585 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T + Sbjct: 586 GDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAM 644 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681 ++ ++K E+ N++I V T+ A A G A+ Y D VRVVS+ Sbjct: 645 STQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVS 704 Query: 682 EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L Sbjct: 705 ELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL 764 Query: 736 MGQDEKLKSLASFLKVSQGNV 756 K +SL L V + V Sbjct: 765 ----RKAESLKKCLSVMEAKV 781 >gi|325179830|emb|CCA14233.1| unnamed protein product [Albugo laibachii Nc14] Length = 1022 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 282/781 (36%), Positives = 422/781 (54%), Gaps = 70/781 (8%) Query: 4 VSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-- 58 + IR TF+ +F+K+ H PS +IP +DPTL+F N+GM FK IF GQ P + Sbjct: 61 ATRIRETFINYFRKHSFHPHTFYPSCPVIPLDDPTLLFINAGMNQFKPIFLGQVDPNHPM 120 Query: 59 ---QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 Q QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ I+++++LLT Sbjct: 121 SKLQRAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKQETIEMSFNLLT 180 Query: 116 KEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 K + +D RLY T + DEE +W K L + +++ DNFW M + G Sbjct: 181 KVYQIDAERLYATYFGGDPKQQLLPDEETRAIWLKY--LPSSRVLPFGCKDNFWEMGDIG 238 Query: 168 PCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 PCGPC+EI +D+ G L + + IEIWN VF+QF ++N + LP +DT Sbjct: 239 PCGPCTEIHYDRLGNRDAAALVNA--DVPDVIEIWNNVFIQFNRENSGKLVPLPNKHVDT 296 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG--------NNIVNHRVIVD 277 GMG ER+A++LQ KT+NYD D+F L + +T + YEG N + +RV+ D Sbjct: 297 GMGFERLASILQGKTSNYDTDVFTPLFHTIQSITKAEPYEGKLGAEDANNKDMAYRVVAD 356 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H+R+ +F IADG++P+N+GRGYVLRRI+RRA+ Y + L + + L+ + M + Sbjct: 357 HIRTLTFAIADGVMPSNDGRGYVLRRILRRAVRYGQQFLNAPKGFLNQLVRVVVDMMHNT 416 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKD------EILNGDVAF 388 +PEL + +E+ + E+E FG+TL++G+ ++ + +D ++G AF Sbjct: 417 FPELKVKQNEVEQAILEEEESFGRTLNKGIEKFRKIVESVQGARDGEKQQAPAISGKDAF 476 Query: 389 KLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSL 448 LYD+ G PLD+ Q + G+ +D+ + + ++ Q R++ GSG + Sbjct: 477 FLYDSMGFPLDLTQVMAEEEGMT-VDVEGYGEQMKLQSERSK-QDRKKGSGDNARPLVLE 534 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 ++ A L G +D K K L V +I E V AV+ Sbjct: 535 AQETNAL------LELGIPTTNDDAKYEWNKA---LQAKVVAIFTTTDSSCEFV-SAVTA 584 Query: 509 QK---VEVVFDQTPFYAEAGGQLGDTGCAIGD---GIRLQITDVQKKAEGIFVHHAIVER 562 QK + +V D+T FYA+AGGQ+ DTG D G R I V+ A G +H +E Sbjct: 585 QKHDRIGIVLDRTSFYAQAGGQVYDTGSLEKDQPAGTRFNIDAVESYA-GYVLHAGTLES 643 Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622 G L+ + +DY R +++ NH+ TH+L+ AL +L +V Q GS + +RFD T Sbjct: 644 GSLQVGDDISCQVDYDRRSKIAPNHTMTHVLNFALRKVLVKNVDQRGSLVDDVRMRFDFT 703 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681 +KP++ ++L+++E+ + I Q L V T+ ++ DA G A+ G Y D VRVVS+ Sbjct: 704 TNKPLSPSQLQAVENMCENSIKQELQVFTKNTSQTDARRIQGLRAVFGETYPDTVRVVSI 763 Query: 682 -----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 E S CGGTH+ +T + + E +I GIRRI A TGQ Sbjct: 764 GQMIDPMLKDPENSTWSNFSVEFCGGTHLENTKQARKFVLYEEGAIARGIRRISAYTGQE 823 Query: 731 A 731 A Sbjct: 824 A 824 >gi|169154547|emb|CAQ13591.1| novel protein similar to vertebrate alanyl-tRNA synthetase (AARS) [Danio rerio] Length = 963 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 319/978 (32%), Positives = 488/978 (49%), Gaps = 109/978 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 66 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + + + +EIWNLVF+QF ++++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A Sbjct: 301 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + GD A+ LYDT+G Sbjct: 361 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+ I RG+ G+D+++F EE++ A+ S G GSG + I + Sbjct: 421 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 467 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512 D LR D + D N V A+ ++ V+E ++GQ+ Sbjct: 468 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 526 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSL 571 V+ D+T FYAE GGQ D G + + + V+ + G +V H G L+ L Sbjct: 527 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 586 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T +++ E Sbjct: 587 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 645 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV---- 681 ++ E+ +IA V DA + A A+ G + Y D VRVVS+ Sbjct: 646 VRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 700 Query: 682 -------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ Sbjct: 701 EELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKA 760 Query: 735 LMGQD----------EKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKRKLQ 780 D EK+K+ + K Q + E + ++RK ++ + + L+ Sbjct: 761 QRKADALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLK 820 Query: 781 LNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQ 821 ++DL ADV + + S +K L + L+ Sbjct: 821 KIMDDLDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSP 880 Query: 822 SGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 ML + + K L V +D+ +R A + + +L G GGG+ AQ+ G Sbjct: 881 QTAAMLFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATG 939 Query: 880 PNGNKADQAIAGVASFLK 897 N +A+ + F + Sbjct: 940 RNTQCIQEALQLASEFAR 957 >gi|84998104|ref|XP_953773.1| alanyl-tRNA synthetase [Theileria annulata] gi|65304770|emb|CAI73095.1| alanyl-tRNA synthetase, putative [Theileria annulata] Length = 1024 Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust. Identities = 286/783 (36%), Positives = 445/783 (56%), Gaps = 62/783 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61 +R F+++F H PSSS++P NDPTL+F N+GM FK+I G+ E + V Sbjct: 82 VRKQFIDYFVSKNHVHWPSSSVLPNNDPTLLFVNAGMNQFKDIIMGKSDENSEFGKLKMV 141 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ H T+FEMLGN+SFG YFKE AI AWDLLT + LD Sbjct: 142 CNSQKCIRAGGKHNDLDDVGQDCYHQTYFEMLGNWSFGAYFKEEAISYAWDLLTNVYKLD 201 Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RLY+T + + D E ++W K + A +I+ + DNFW MA+TGPCGPC+EI Sbjct: 202 PNRLYVTYFGGDKSCEVDNETREIWLKF--MPASRILPFGSKDNFWEMADTGPCGPCTEI 259 Query: 176 FFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D GG S+ + +EIWN+VFMQ+ + LPK +DTGMGLER Sbjct: 260 HYDH----IGGRDASTLVNADDPNVVEIWNIVFMQYNRGENGVLERLPKGCVDTGMGLER 315 Query: 233 MATVLQEKTNNYDIDLFKHLIQA-SEQVTGMK-YEGNNI---VNHRVIVDHLRSSSFLIA 287 + +VL +NY+ DL +IQ E + G + Y+G N V +RV+ DH+R S I+ Sbjct: 316 LCSVLNNTNSNYNTDLLNDIIQYIRELLPGFESYKGGNTPLDVAYRVVSDHVRCLSVAIS 375 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 D + P+NEGRGYVLRRI+RRA+ Y R EP + L+P++ +G+AYP L+ + Sbjct: 376 DKVYPSNEGRGYVLRRILRRAVRYCRDYFNTKEPFLYKLVPSVTKLLGNAYPNLLTEQAN 435 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE + E++ F +TLD+G+ ++S G ++++NG AF LY ++G PLD+ +L Sbjct: 436 IESIVLDEEKLFLQTLDKGVEKFKKMVSKSG-NKVINGPDAFLLYQSYGFPLDLT--MLM 492 Query: 407 ARGLA-GIDIISFNQALE--EQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 AR L +D+ + L+ +Q+S +R ++ L +K+ SL T + Sbjct: 493 ARELGITVDVDGYYSELKLHQQKSESRVYTDLNSLESRCDKLLKSLSADRINT------I 546 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE------VVFD 516 L+ + D K+ K D ++ V+ + KA + ++ +S + + +V D Sbjct: 547 LKMCNNVYTDDKL---KYDWDSSDPVAKVYKAKLVSTVTLDSVMSELQCDDDDLVCLVMD 603 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER-GILRTEMSLVLTI 575 +TPFYAE GGQ+ DTG I D L++ V K + G+ H + ++ G+LR L + Sbjct: 604 RTPFYAEGGGQIYDTG-YIND---LEVLRVYKMS-GLVFHFCLSKKSGVLRCGDEFELKV 658 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 DY+ R +++ NH++TH+L+ L +L Q GS + + L+FD +++ + ++ I Sbjct: 659 DYERRVRVASNHTSTHILNFVLRDMLDESSYQRGSQLDEEKLKFDYCYNQQLPEDLIRRI 718 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY--ED-GGVHSS 691 ED + D + P+ TR + ++A+ G A KY + VRVV+V+ ED G H+S Sbjct: 719 EDRMMDFVRSEAPLRTREIEYKNALEIPGIRANFDEKYPEVVRVVNVQLGSEDFSGEHTS 778 Query: 692 A-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR---SHLMGQDEKLKSLAS 747 +CGGTH+++T I + +V E I G+RR+ +T ++ R + L+ +++L+ L Sbjct: 779 TEVCGGTHLTNTKTIQDVAVVGEEGISKGVRRLTLVTNEQCRKSKADLLHYEKRLEELEK 838 Query: 748 FLK 750 LK Sbjct: 839 NLK 841 >gi|281350877|gb|EFB26461.1| hypothetical protein PANDA_021488 [Ailuropoda melanoleuca] Length = 976 Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust. Identities = 296/806 (36%), Positives = 427/806 (52%), Gaps = 84/806 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 7 ASEIRQRFIDFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF Sbjct: 67 SRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPCG Sbjct: 127 GIPLERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG + +++ +EIWNLVF+Q+ +++ LPK SIDTG Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278 MGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYSGKVGADDADGIDMAYRVLADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 R+ + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+ Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAF 361 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P Sbjct: 362 PELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFP 421 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ I +GL +D+ F EE+R A+ S G G+G + I + Sbjct: 422 VDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGDDLIMLDI--------- 467 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSG 508 + LR D P + + S + V A+ + VEE +G Sbjct: 468 YAIEELREKGLEATD-----DSPKYNYHSDSSGSYAFESTVATVMALRRDKMFVEEVCTG 522 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVER 562 Q+ VV D+T FYAE GGQ+ D G + D + + Q + G +V H Sbjct: 523 QECGVVLDKTCFYAEQGGQIYDEGYLVKVEDNSEDKTEFTVKNAQVR--GGYVLHIGTIY 580 Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622 G LR + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 581 GSLRVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFT 639 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681 +++ ++K E+ N +I PV T+ A A G A+ Y D VRVVS+ Sbjct: 640 AKGAMSTQQIKKAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSI 699 Query: 682 -----EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 E D G + S CGGTH+ ++ +VSE +I GIRRI A+TG Sbjct: 700 GVPVSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVLVSEEAIAKGIRRIVAVTGAE 759 Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNV 756 A+ L K +SL + L + + V Sbjct: 760 AQKAL----RKAESLKNSLSIMEAKV 781 >gi|74213943|dbj|BAE29394.1| unnamed protein product [Mus musculus] Length = 968 Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust. Identities = 292/795 (36%), Positives = 425/795 (53%), Gaps = 80/795 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 10 IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF + Sbjct: 70 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPCGPCS Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMRDNFWEMGDTGPCGPCS 188 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVF+Q+ +++ LPK SIDTGMGL Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH R+ Sbjct: 245 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ Sbjct: 365 KKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I +GL +D+ F EE+R A+ S G G+G + I + Sbjct: 425 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511 + LR D P + + S + V A+ ++ V+E V+GQ+ Sbjct: 471 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565 VV D+T FYAE GGQ+ D G + D + + Q + G +V H G L Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 + + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 642 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681 +++ ++K E+ VN +I PV T+ A A G A+ Y D VRVVS+ Sbjct: 643 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702 Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ Sbjct: 703 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762 Query: 734 HLMGQDEKLKSLASF 748 L + KSL++ Sbjct: 763 ALRKSETLKKSLSAM 777 >gi|34610207|ref|NP_666329.2| alanyl-tRNA synthetase, cytoplasmic [Mus musculus] gi|47117019|sp|Q8BGQ7|SYAC_MOUSE RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|23270912|gb|AAH33273.1| Alanyl-tRNA synthetase [Mus musculus] gi|26351767|dbj|BAC39520.1| unnamed protein product [Mus musculus] gi|148679538|gb|EDL11485.1| alanyl-tRNA synthetase, isoform CRA_b [Mus musculus] Length = 968 Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust. Identities = 292/795 (36%), Positives = 425/795 (53%), Gaps = 80/795 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 10 IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF + Sbjct: 70 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPCGPCS Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPCGPCS 188 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVF+Q+ +++ LPK SIDTGMGL Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH R+ Sbjct: 245 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ Sbjct: 365 KKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I +GL +D+ F EE+R A+ S G G+G + I + Sbjct: 425 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511 + LR D P + + S + V A+ ++ V+E V+GQ+ Sbjct: 471 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565 VV D+T FYAE GGQ+ D G + D + + Q + G +V H G L Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 + + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 642 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681 +++ ++K E+ VN +I PV T+ A A G A+ Y D VRVVS+ Sbjct: 643 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702 Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ Sbjct: 703 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762 Query: 734 HLMGQDEKLKSLASF 748 L + KSL++ Sbjct: 763 ALRKSETLKKSLSAM 777 >gi|169154546|emb|CAQ13590.1| novel protein similar to vertebrate alanyl-tRNA synthetase (AARS) [Danio rerio] Length = 988 Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust. Identities = 319/978 (32%), Positives = 488/978 (49%), Gaps = 109/978 (11%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 31 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 90 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 91 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 150 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 151 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 209 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + + + +EIWNLVF+QF ++++ LPK SIDT Sbjct: 210 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 265 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 266 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 325 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A Sbjct: 326 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDA 385 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + GD A+ LYDT+G Sbjct: 386 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGF 445 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+ I RG+ G+D+++F EE++ A+ S G GSG + I + Sbjct: 446 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 492 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512 D LR D + D N V A+ ++ V+E ++GQ+ Sbjct: 493 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 551 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSL 571 V+ D+T FYAE GGQ D G + + + V+ + G +V H G L+ L Sbjct: 552 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDFTVKNTQVRGGYVLHIGTVYGTLKVGDRL 611 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T +++ E Sbjct: 612 TLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTDE 670 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV---- 681 ++ E+ +IA V DA + A A+ G + Y D VRVVS+ Sbjct: 671 VRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 725 Query: 682 -------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ Sbjct: 726 EELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAIAKGIRRIVAVTGAEAQKA 785 Query: 735 LMGQD----------EKLKSLASFLKVSQGNVVGRVEE----IWEEYRKLQLIHAKRKLQ 780 D EK+K+ + K Q + E + ++RK ++ + + L+ Sbjct: 786 QRKADALKLSLDALAEKVKAQSIPNKDVQKEIADMTESLGTAVISQWRKDEMRESLKGLK 845 Query: 781 LNVEDLSCHKIADVN-------------------FMSHIISEVDSKELKSVMDALQKKIQ 821 ++DL ADV + + S +K L + L+ Sbjct: 846 KIMDDLDRASKADVQKRVLEKTKEIIDSNPNQPLIVMEMESGASAKALNESLKMLKTNSP 905 Query: 822 SGIIMLVGISKEK-KASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGG 879 ML + + K L V +D+ +R A + + +L G GGG+ AQ+ G Sbjct: 906 QTAAMLFTVDNDAGKIICLCQVPQDVANRGLKASEWVQEVCPLL-DGKGGGKDMSAQATG 964 Query: 880 PNGNKADQAIAGVASFLK 897 N +A+ + F + Sbjct: 965 RNTQCIQEALQLASEFAR 982 >gi|301791808|ref|XP_002930871.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Ailuropoda melanoleuca] Length = 968 Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust. Identities = 296/806 (36%), Positives = 427/806 (52%), Gaps = 84/806 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 7 ASEIRQRFIDFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF Sbjct: 67 SRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPCG Sbjct: 127 GIPLERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG + +++ +EIWNLVF+Q+ +++ LPK SIDTG Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGILKPLPKKSIDTG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278 MGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYSGKVGADDADGIDMAYRVLADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 R+ + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+ Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAF 361 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P Sbjct: 362 PELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFP 421 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ I +GL +D+ F EE+R A+ S G G+G + I + Sbjct: 422 VDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGDDLIMLDI--------- 467 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSG 508 + LR D P + + S + V A+ + VEE +G Sbjct: 468 YAIEELREKGLEATD-----DSPKYNYHSDSSGSYAFESTVATVMALRRDKMFVEEVCTG 522 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVER 562 Q+ VV D+T FYAE GGQ+ D G + D + + Q + G +V H Sbjct: 523 QECGVVLDKTCFYAEQGGQIYDEGYLVKVEDNSEDKTEFTVKNAQVR--GGYVLHIGTIY 580 Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622 G LR + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 581 GSLRVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFT 639 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681 +++ ++K E+ N +I PV T+ A A G A+ Y D VRVVS+ Sbjct: 640 AKGAMSTQQIKKAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSI 699 Query: 682 -----EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 E D G + S CGGTH+ ++ +VSE +I GIRRI A+TG Sbjct: 700 GVPVSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVLVSEEAIAKGIRRIVAVTGAE 759 Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNV 756 A+ L K +SL + L + + V Sbjct: 760 AQKAL----RKAESLKNSLSIMEAKV 781 >gi|256383814|gb|ACU78384.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384644|gb|ACU79213.1| alanine--tRNA ligase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455443|gb|ADH21678.1| alanine--tRNA ligase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 896 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 297/932 (31%), Positives = 488/932 (52%), Gaps = 106/932 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L+FF H L + SLIP +DP+L++ NSG+ K F G++ P +T Sbjct: 6 TNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT + FD+D Sbjct: 66 SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKNYFDID 121 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LYITV++ED EA+ +WK + + D I R++ NFW + + GPCGP +EIF+D+GE Sbjct: 122 KDKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRGE 180 Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 I L E +RYIE+WN+VF QF LP+ +IDTG GLER A++ Sbjct: 181 IWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNDNYTELPRKNIDTGAGLERFASI 240 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSSS 283 Q N++ D+F I+ EQ+T KY +N N +VI DH+R++ Sbjct: 241 FQNTPTNFETDIFYPTIKKVEQLTNDQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATV 300 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 F I+DG+ P N+ RGY++RR++RR+ + + LG + + L+ ++ M YP LI Sbjct: 301 FAISDGVFPGNKDRGYIIRRLIRRSCVFGKELGIKQAFLYKLVDSVIESMKEFYPYLIDK 360 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 K L+E+T++ E+E+F KTL +G LL+ ++ K+ + + D A L++++G P++ + Sbjct: 361 KTLVEQTIKDEEEKFLKTLSKGYDLLENIIK--TKNTVSDKD-ALLLFESYGFPIEQTIE 417 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDL 462 I + +DI F + LE+ + R L + + F+ LK + ++F G+ Sbjct: 418 ISELSNVT-VDIEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKVE---SEFTGW-- 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 S+ +++ KV+ Q ++ E+++ Q+ V+ D+TPFYA Sbjct: 472 ---SETSRDNAKVIY----------------MFTDQKQV--ESITDQEAFVILDKTPFYA 510 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ D+G D ++ + DVQ+ +H V+ G L+ + +D + R Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNIHRIKVQ-GTLKVNDLVNCRVDEEKRIY 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHS TH++H+AL +LG+ V Q+GS +GLR D T+ + T+ EL ++ V + Sbjct: 570 TMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629 Query: 643 IAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + T + E+++ A A KY++ VRV+ G SS LCGGTHV++ Sbjct: 630 IKNKIDRQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGTHVNN 684 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD------------EKLKSLASFL 749 T EI I S +G+ RI+ +T + + + + +K L Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQNKDLL 744 Query: 750 KVSQ---------------------GNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786 K Q +++ +++EI ++Y K LI A + L+ Sbjct: 745 KNDQLENIYLQIKNITINKDNLLVIKDLLDKLKEINKDYDKKVNDLITANKLLKYKDLTP 804 Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846 S +K ++N + ++++ K+LK + D L+ K I++L+ + E V++ V++ L Sbjct: 805 SLNK-DNINEIRLETTDLNIKDLKQLADDLRNKYDDLIVILLSSTSENNF-VVVAVSQSL 862 Query: 847 LDRFNAVDLARLSAKVLGG--GGGGGRPHMAQ 876 +++ A+D+ L G GGG ++AQ Sbjct: 863 QNKYKAIDIFN----NLEGYETKGGGNANLAQ 890 >gi|317497358|ref|ZP_07955681.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895427|gb|EFV17586.1| alanyl-tRNA synthetase [Lachnospiraceae bacterium 5_1_63FAA] Length = 765 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 295/790 (37%), Positives = 436/790 (55%), Gaps = 44/790 (5%) Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 LD RLY +VY++D+EAF++W+K G++ ++I R DNFW GPCGPCSEI++D+ Sbjct: 4 LDPDRLYPSVYEDDDEAFEIWEKEIGIAPERIFRFGKEDNFWEHG-AGPCGPCSEIYYDR 62 Query: 180 GECIPGGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 GE G P + + +RY+E+WN VF QFE L +IDTGMGLER+A V+ Sbjct: 63 GEKYGCGSPDCTVGCDCDRYMEVWNNVFTQFENDGHNHYTELENKNIDTGMGLERLAVVV 122 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNN--IVNHRVIVDHLRSSSFLIADGILPANE 295 QE + +D+D K + +V G+ Y ++ V+ RVI DH+RS++F+++DGI P+NE Sbjct: 123 QEVDSIFDVDSIKAIRDEICKVAGVTYGADHETDVSIRVITDHIRSATFMLSDGITPSNE 182 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 GRGYVLRR++RRA + RLLG + + + E YPEL + I L E+ Sbjct: 183 GRGYVLRRLIRRAARHGRLLGIDHLFLTDISKVVIRESKDGYPELEEKAEFIFNHLSQEE 242 Query: 356 ERFGKTLDRGLVLL---DGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 ++F KT+D+GL +L + ++ G E+ D AFKLYDT+G PLD+ +IL +G Sbjct: 243 KQFNKTIDQGLSILADMEKAMNEKGSKELAGAD-AFKLYDTYGFPLDLTIEILEEKGFT- 300 Query: 413 IDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 +D F + ++ QR ARA + + + T+F+GYD L Sbjct: 301 VDKEGFEKEMQVQRETARAARKTTNYMGADATVYEQLDPAMTTKFVGYDEL--------- 351 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 C+ + A+ + E+V G K +V DQT FYA +GGQ D G Sbjct: 352 ---TCEGE-----------ITAMTTETEVVSALNKGDKGTIVADQTAFYATSGGQEADKG 397 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 I ++ DV K + G F H V G V T++ +NR + NHSATHL Sbjct: 398 VIISGDASFEVEDVIKLSGGKFGHVGHVVEGTFNVGDKAVFTVNEKNRALGAKNHSATHL 457 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L AL +LG+HV Q GS + LRFD TH P++ E+ +E VN+ IAQ+LPVVT+ Sbjct: 458 LQKALREVLGTHVEQAGSLNNAEHLRFDFTHFSPLSDDEIARVEKIVNEKIAQDLPVVTK 517 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 +M+ E+A +GA AL G KY D VRVVS+ G S LCGGTHV +TG I I+S Sbjct: 518 VMSMEEAKKTGAMALFGEKYGDEVRVVSM-----GDFSVELCGGTHVKNTGAITAFKILS 572 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQL 772 E+ + +G+RRIEA+T Q ++ Q+E+LK A LK + ++ R+E + E ++L+ Sbjct: 573 ETGVASGVRRIEAVTDQGVFNYYHKQEEELKEAAKALKATPATLLTRIESLLAEVKELKS 632 Query: 773 IHAKRKLQLNVEDL-----SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 + K +L + L ++ V ++ I +VD L+ + D L++K+ G+I+L Sbjct: 633 ENESLKSKLAKDALGDVMDQVEEVKGVKLLATSIEDVDMNGLRELGDNLKEKLGEGVIVL 692 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 K V +V E +A +L + A + GGGGGGRP+MAQ+GG N + Sbjct: 693 ASQKDGKVFLVAMVTDEAQKAGAHAGNLIKAIAGCV-GGGGGGRPNMAQAGGKNPAGIPE 751 Query: 888 AIAGVASFLK 897 A+A V L+ Sbjct: 752 AVAKVKEILE 761 >gi|331703175|ref|YP_004399862.1| alanyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801730|emb|CBW53883.1| Alanyl tRNA synthetase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 896 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 297/932 (31%), Positives = 488/932 (52%), Gaps = 106/932 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L+FF H L + SLIP +DP+L++ NSG+ K F G++ P +T Sbjct: 6 TNQIRKIWLDFFISKNHYFLETVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT K FD+D Sbjct: 66 SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKKYFDID 121 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LYITV++ED EA+ +WK + + D I R++ NFW + + GPCGP +EIF+D+GE Sbjct: 122 KNKLYITVFNEDTEAYNIWKDVIKIDEDHIFRLSRKTNFWDVGQ-GPCGPNTEIFYDRGE 180 Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 I L E +RYIE+WN+VF QF LP+ +IDTG GLER A++ Sbjct: 181 IWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNDNYTELPRKNIDTGAGLERFASI 240 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSSS 283 Q N++ D+F I+ E++T KY +N N +VI DH+R++ Sbjct: 241 FQNTPTNFETDIFYPTIKKVEELTNDQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATV 300 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 F I+DG+ P N+ RGY++RR++RR+ + LG + + L+ ++ M YP LI Sbjct: 301 FAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYPYLIDK 360 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 K L+E+T++ E+E+F KTL +G LL+ ++ K+ + + D A L++++G P++ + Sbjct: 361 KTLVEQTIKDEEEKFLKTLSKGYDLLENIIK--TKNTVSDKD-ALLLFESYGFPIEQTIE 417 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDL 462 I + +D+ F + LE+ + R L + + F+ LK + ++F G+ Sbjct: 418 ISELSNVT-VDVEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKVE---SEFTGW-- 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 S+ +++ KV+ Q ++ E+++ Q+V V+ D+TPFYA Sbjct: 472 ---SETSRDNAKVIY----------------MFTDQKQV--ESITDQEVFVILDKTPFYA 510 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ D+G D ++ + DVQ+ +H V+ G L+ + +D + R Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNIHRIKVQ-GTLKVNDLINCRVDEEKRIY 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHS TH++H+AL +LG+ V Q+GS +GLR D T+ + T+ EL ++ V + Sbjct: 570 TMKNHSGTHMIHYALREVLGTSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629 Query: 643 IAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + T + E+++ A A KY++ VRV+ G SS LCGGTHV++ Sbjct: 630 IKNKIDRQTYFCSLEESVNKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGTHVNN 684 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD------------EKLKSLASFL 749 T EI I S +G+ RI+ +T + + + + +K L Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQNKDLL 744 Query: 750 KVSQ---------------------GNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786 K Q +++ +++EI ++Y K LI A + L+ Sbjct: 745 KNDQLENIYLQIKNITINKDNLLVIKDLLDKLKEINKDYDKKVNDLITANKLLKYKDLTP 804 Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846 S +K ++N + ++++ K+LK + D L+ K I++L+ + E V++ V++ L Sbjct: 805 SLNK-DNINEIRLETTDLNIKDLKQLADDLRNKYDDLIVILLSSTSENNF-VVVAVSQSL 862 Query: 847 LDRFNAVDLARLSAKVLGG--GGGGGRPHMAQ 876 +++ A+D+ L G GGG ++AQ Sbjct: 863 QNKYKAIDIFN----NLEGYETKGGGNANLAQ 890 >gi|148679537|gb|EDL11484.1| alanyl-tRNA synthetase, isoform CRA_a [Mus musculus] Length = 1055 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 292/795 (36%), Positives = 425/795 (53%), Gaps = 80/795 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 97 IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 156 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF + Sbjct: 157 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 216 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPCGPCS Sbjct: 217 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPCGPCS 275 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVF+Q+ +++ LPK SIDTGMGL Sbjct: 276 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 331 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH R+ Sbjct: 332 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 391 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL Sbjct: 392 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 451 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ Sbjct: 452 KKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 511 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I +GL +D+ F EE+R A+ S G G+G + I + Sbjct: 512 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 557 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511 + LR D P + + S + V A+ ++ V+E V+GQ+ Sbjct: 558 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 612 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565 VV D+T FYAE GGQ+ D G + D + + Q + G +V H G L Sbjct: 613 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 670 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 + + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 671 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 729 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681 +++ ++K E+ VN +I PV T+ A A G A+ Y D VRVVS+ Sbjct: 730 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 789 Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ Sbjct: 790 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 849 Query: 734 HLMGQDEKLKSLASF 748 L + KSL++ Sbjct: 850 ALRKSETLKKSLSAM 864 >gi|299115131|emb|CBN75498.1| Alanyl-tRNA Synthetase [Ectocarpus siliculosus] Length = 1122 Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust. Identities = 286/791 (36%), Positives = 415/791 (52%), Gaps = 83/791 (10%) Query: 3 NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 +V+ +R TF++ F+ K H PSS ++P NDP+L+F N+GM FK +F GQ P Sbjct: 153 SVTKVRQTFIDHFKSKREHTFYPSSPVVPVNDPSLLFANAGMNQFKPVFLGQTDPSSPLA 212 Query: 57 -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + +AV + QKC+RAGGKHNDLD+VGR HHTFFEMLG +SFG YFKE A++ ++ L Sbjct: 213 GLKRAVNS-QKCIRAGGKHNDLDDVGRDVYHHTFFEMLGTWSFGDYFKEEAVEWGFEALN 271 Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + F L RLY T + DE E LW K+ L D+++ DNFW M + G Sbjct: 272 EVFGLPADRLYATYFGGDEELGLAPDLETRDLWLKV--LPEDRVMPGDRKDNFWEMGDVG 329 Query: 168 PCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 PCGPCSE+ FD+ GG +S + IEIWNLVFMQF + +LP + Sbjct: 330 PCGPCSELHFDR----IGGRNAASLVNMDDPDVIEIWNLVFMQFNRDEAGNLKLLPAKHV 385 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEGN--------NIVNHRVI 275 DTG+GLER+ ++LQ+K +NYD D+F L A + VTG YEG +RV+ Sbjct: 386 DTGLGLERLVSILQDKRSNYDTDVFGPLFDAIQDVTGCPPYEGKVGDEDVGLKDTAYRVV 445 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMG 334 DH R+ SF I DG +PAN+GRGYVLRRI+RRA+ Y + + P ++P + E G Sbjct: 446 ADHARALSFAITDGAVPANDGRGYVLRRILRRAVRYGQDVLKAPPGFFQKIVPVVVAEFG 505 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGV-LSHLGKDE-ILNGDVAFKLYD 392 YPEL + + + E ++ E+E F L+RG+ V GK + GD AF LYD Sbjct: 506 DMYPELREKEAFVMEIIKEEEEAFSSMLERGIKHFKEVEEEQRGKSSNTIPGDTAFFLYD 565 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR------------AHSLGLGSGT 440 + G PLD+ Q + G+ +D F + Q++R++ ++ LG+ Sbjct: 566 SMGFPLDLTQVMAEEVGMT-VDEEGFANEMAAQKARSKEAEAARRAAGAGVRAMALGADE 624 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 T ++ +E T D + + KV+ L +G + A G Sbjct: 625 TSRL---AEEGVKPTD----DEAKYTWSTTTGNKVVA------LFDGETLSTTASQSGGT 671 Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI-------GDGIRLQITDVQKKAEGI 553 + V ++ D TPFY+EAGGQ+ D+G + GD +++ DV+ G Sbjct: 672 AAASSDDATTVGILLDSTPFYSEAGGQVSDSGKLVVSAGGEDGDDGVIEVADVRMFG-GF 730 Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613 +H + G L S+ +DY RR+++ NH+ TH L++AL + V Q GS +T Sbjct: 731 ALHVGRLVSGSLSVGDSVRCEVDYDRRRKVAPNHTMTHALNYALRKAVDEGVDQKGSLVT 790 Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKY 672 + LRFD +H K +T +L+ E V II + V +++ +A + G A+ G Y Sbjct: 791 DEKLRFDFSHGKALTGPQLEESEAIVQRIIQEEKEVYNQVLPLSEAKSIFGLRAVFGEVY 850 Query: 673 NDRVRVVSVEY-----------EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 D VRVVSV + E+ S CGGTHV +T E I E+++ G+R Sbjct: 851 PDPVRVVSVGFPVEDMAKDPSREEWATSSVEFCGGTHVGNTREAEAFVITEETAVAKGVR 910 Query: 722 RIEAITGQRAR 732 RI AITG A+ Sbjct: 911 RITAITGSAAK 921 >gi|209862801|ref|NP_001093987.1| alanyl-tRNA synthetase, cytoplasmic [Rattus norvegicus] gi|261260086|sp|P50475|SYAC_RAT RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|149038198|gb|EDL92558.1| alanyl-tRNA synthetase [Rattus norvegicus] Length = 968 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 293/795 (36%), Positives = 424/795 (53%), Gaps = 80/795 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 IR F+ +F++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 10 IRERFINYFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTVDPSHPMAKLSRA 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF + Sbjct: 70 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPCGPCS Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEAKILPGNMKDNFWEMGDTGPCGPCS 188 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVF+Q+ +++ LPK SIDTGMGL Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH R+ Sbjct: 245 ERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDTDGIDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCQTIPGDTAWLLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I +GL +D+ F EE+R A+ S G G+G + I + Sbjct: 425 TGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---------YAI 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511 + LR D P + + S + V A+ ++ V+E V+GQ+ Sbjct: 471 EELRAKGLEATD-----DSPKYNYHSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565 VV D+T FYAE GGQ+ D G + D + + Q + G +V H G L Sbjct: 526 GVVLDKTCFYAEQGGQIFDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 R + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 584 RVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGD-ADQKGSLVAPDRLRFDFTAKG 642 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681 +++ ++K E+ VN +I PV T A A G A+ Y D VRVVS+ Sbjct: 643 AMSTEQIKKTEEIVNGMIEAAKPVYTLDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702 Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ Sbjct: 703 VSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762 Query: 734 HLMGQDEKLKSLASF 748 L + KSL++ Sbjct: 763 ALRKSETLKKSLSAM 777 >gi|326519084|dbj|BAJ96541.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 1008 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 280/771 (36%), Positives = 404/771 (52%), Gaps = 72/771 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61 +R F++FF+ H PSS ++P +DPTL+F N+GM FK +F G P Q Sbjct: 64 VREVFIDFFKSKSHTPWPSSPVVPVDDPTLLFANAGMNQFKPVFLGTASPDSQLGRLSRA 123 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLT+ + L Sbjct: 124 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEGAIGYAWELLTQVYKLP 183 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 R+Y T + DE E+ +W K L ++++ DNFW M +TGPCGPC+ Sbjct: 184 TDRIYATYFGGDEKAGLAPDTESKNIWLKY--LPNERVLPFGCKDNFWEMGDTGPCGPCT 241 Query: 174 EIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EI FD+ G L + + IEIWNLVF+QF +++ LP +DTGMG ER Sbjct: 242 EIHFDRIGNRDAASL--VNNDDPTCIEIWNLVFIQFNRESDGSLRSLPAKHVDTGMGFER 299 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-----------GNNIVNHRVIVDHLRS 281 + ++LQ K +NYD D+F L A Q+ G+ + G + +RV+ DH+R+ Sbjct: 300 LTSILQNKMSNYDTDVFMPLFDAIHQLAGVGIQPYSGKVGSDDVGKVDMAYRVVADHIRT 359 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 SF IADG P NEGR YVLRRI+RRA+ + + L + L+ MG +PEL Sbjct: 360 LSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKLMAKQGFFSSLVDVFVRVMGDVFPEL 419 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLL----DGVLSHLGKDEILNGDVAFKLYDTHGL 396 + I++ ++ E+ F T+ +G D V + G +L+G AF L+DT+G Sbjct: 420 KDNEKKIKDIIKDEEASFENTIAKGYERFKKAADAVKENGGA--VLSGQDAFVLWDTYGY 477 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + GL+ +D+ FN ++EE R +AR G + + + ++ Sbjct: 478 PIDLTEVMAVDFGLS-VDMEGFNASMEEARQKARNARYKAGGKSI------VLDANATSE 530 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 L + K +V SS+VKAI E + A + +V + Sbjct: 531 LRNQGLASTNDSPKFQHEVH------------SSVVKAIYTGSEFIATASGDEDFGLVLE 578 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS----LV 572 T FYAE GGQ+ DTG G + +VQ A G +H G +S + Sbjct: 579 STSFYAEQGGQIYDTGSIEGPSGSFTVNNVQVFA-GYVLHIGSFLEGPDSKALSVGDEVK 637 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 +DY R +S NH+ TH+L+ AL +LG HV Q GS + P+ LRFD +H KP+ +L Sbjct: 638 CKVDYTRRTLISPNHTCTHMLNFALKEVLGDHVDQKGSIVLPEKLRFDFSHGKPVQPEDL 697 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV---------- 681 + IE VN I L V + + DA +G A+ G Y D VRVVS+ Sbjct: 698 RKIEYIVNKQIKDELEVSAQEIKLADAKRINGLRAVFGEIYPDPVRVVSIGCKVEDLLAN 757 Query: 682 -EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E ++ S+ LCGGTH+S+T + ++SE I G+RRI A+T + A Sbjct: 758 PESKEWLSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECA 808 >gi|283781582|ref|YP_003372337.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068] gi|283440035|gb|ADB18477.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068] Length = 935 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 275/783 (35%), Positives = 416/783 (53%), Gaps = 70/783 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R +L FFQ GH S L+P DP+++FT +GM PFK+ F G+ K + TT QK Sbjct: 6 LREKYLAFFQTKGHTRKASDVLVPRWDPSVLFTPAGMNPFKDHFLGKVKLEFTRATTSQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R G D+DNVGRT HHTFFEMLGNFSFG YFK+ AI AW+ LT K + Sbjct: 66 CLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKKEAIHWAWEFLTDKKWLGIPGDL 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW--SMAETGP---CGPCSEIFFDQ 179 L +TVY +D+EA +W GL +I R+ +DNFW S GP CGPCSEI++ Sbjct: 122 LTVTVYLDDDEAADIWHNEIGLPTSRIERMGEDDNFWPASSPSKGPDGVCGPCSEIYYK- 180 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237 +P G + +EIWNLVF QF + + LP +IDTGMGLER+A+V+ Sbjct: 181 ---LPSG---------KTVEIWNLVFTQFNRVGNPPNNLRPLPSKNIDTGMGLERIASVM 228 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYE--GNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q NY ID+ + +++A+ +V KY+ +N R I DH+R+ +F I + +LP Sbjct: 229 QGVDTNYHIDILRPIVEAAAEVCSQKYDPASDNGRRLRRIADHVRACTFAIHENVLPGPN 288 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 YV+RR++RRA+ +G +P + L+P + M S YPEL + +++ +++E+ Sbjct: 289 REKYVIRRLLRRAVLDGHQMGLRDPFLYQLVPIVAEMMKSPYPELGETIERVQKGIKAEE 348 Query: 356 ERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 F T+D GL + G+ + G+ + G+ A LY T+G+P ++++++ Sbjct: 349 SAFFGTIDAGLARISGMFDSMKSEGRVMVAGGEAA-DLYQTNGVPPELVENMAAELNFT- 406 Query: 413 IDIISFNQALEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 D F A+EE R+ + + +G E + +LKE TQF+GY+ Sbjct: 407 FDWDGFRTAMEEHGERSGKIADVVFKTGPIEALKRALKE----TQFVGYE---------- 452 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEVVFDQTPFYAEAGGQL 528 T ++ +K +V +V EE V VV D++PFY E+GGQ+ Sbjct: 453 -------------TTETTAEIKGVVAAEHLVDTLEEVGHESPVIVVLDKSPFYGESGGQV 499 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 GDTG +G G + Q+ D QK A+ + +H+ + G + + +D R + HS Sbjct: 500 GDTGEIVGPGFKFQVIDTQKDAD-LLLHYGHLIEGKMNAGAKVTAKVDTVRRNGIRRAHS 558 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATH+L +AL LG Q GS + D LRFD + P+ + +L IE V+ +A P Sbjct: 559 ATHILQYALQQTLGKETHQMGSKVEEDQLRFDFGNPSPVDAEQLLVIEKEVHARVAAADP 618 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 V + + +A +GA L G KY D R+VS+ G S LC GTH+ +T +++ Sbjct: 619 VAWKFVPLTEARTAGAMMLFGEKYPDPARMVSM-----GSFSKELCAGTHLDNTRDVLAF 673 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I++E + AG RRI A+TG++A+S L LA+ L V V V + ++ R Sbjct: 674 EIIAEEGVAAGTRRIVALTGEKAKSFSEKTSTALNELANLLGVELLAVPQAVRTLAQQVR 733 Query: 769 KLQ 771 L+ Sbjct: 734 DLK 736 >gi|81871231|sp|Q8CFX8|SYAC_MESAU RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|26522952|dbj|BAC44844.1| alanyl trna synthetase [Mesocricetus auratus] Length = 968 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 293/793 (36%), Positives = 423/793 (53%), Gaps = 80/793 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 10 IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPLAKLSRA 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF + Sbjct: 70 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFAIP 129 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPCGPCS Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDAKILPGNMKDNFWEMGDTGPCGPCS 188 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDTGMGL Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGLLKPLPKKSIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH R+ Sbjct: 245 ERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I +GL +D+ F EE+R A+ S G G+G + I + Sbjct: 425 TGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---------YAI 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511 + LR D P + + S + V A+ ++ VEE V+GQ+ Sbjct: 471 EELRAKGLEATD-----DSPKYNYHSDSSGAYVFECTVATVLALRREKMFVEEVVTGQEC 525 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565 VV D+T FYAE GGQ+ D G + D + + Q + G +V H G L Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 + + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 642 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681 +++ ++K E+ VN +I PV T+ A A G A+ Y D VRVVS+ Sbjct: 643 AMSTQQIKEAEEIVNAMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702 Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ Sbjct: 703 VSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762 Query: 734 HLMGQDEKLKSLA 746 L + +SL+ Sbjct: 763 ALRKAESLRRSLS 775 >gi|37903407|gb|AAP57355.1| Alanyl-tRNA synthase [Mus musculus] Length = 968 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 292/795 (36%), Positives = 425/795 (53%), Gaps = 80/795 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 10 IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF + Sbjct: 70 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPCGPCS Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPCGPCS 188 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVF+Q+ +++ LPK SIDTGMGL Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH R+ Sbjct: 245 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ Sbjct: 365 KKDPEMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I +GL +D+ F EE+R A+ S G G+G + I + Sbjct: 425 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511 + LR D P + + S + V A+ ++ V+E V+GQ+ Sbjct: 471 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565 VV D+T FYAE GGQ+ D G + D + + Q + G +V H G L Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 + + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 642 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681 +++ ++K E+ VN +I PV T+ A A G A+ Y D VRVVS+ Sbjct: 643 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702 Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ Sbjct: 703 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHEGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762 Query: 734 HLMGQDEKLKSLASF 748 L + KSL++ Sbjct: 763 ALRKSETLKKSLSAM 777 >gi|1015321|dbj|BAA06808.1| alanyl-tRNA synthetase [Homo sapiens] Length = 968 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 296/801 (36%), Positives = 429/801 (53%), Gaps = 72/801 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGK NDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKQNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + +ADG P N GRGYVLRRI+RRA+ YA L + L+ + +G A Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ I +GL +D+ F EE+R A+ S G G+G + I + Y + Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472 Query: 457 FIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 RG + + K L N V++++ A+ ++ VEE +GQ+ V Sbjct: 473 LRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVSTGQECGV 527 Query: 514 VFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 V D+T FYAE GGQ+ D G + D + + Q + G +V H G L+ Sbjct: 528 VLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKV 585 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T + Sbjct: 586 GDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAM 644 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681 ++ ++K E+ N++I V T+ A A G A+ Y D VRVVS+ Sbjct: 645 STQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVS 704 Query: 682 EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L Sbjct: 705 ELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL 764 Query: 736 MGQDEKLKSLASFLKVSQGNV 756 K +SL L V + V Sbjct: 765 ----RKAESLKKCLSVMEAKV 781 >gi|119484060|ref|XP_001261933.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181] gi|119410089|gb|EAW20036.1| alanyl-tRNA synthetase, putative [Neosartorya fischeri NRRL 181] Length = 961 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 289/775 (37%), Positives = 426/775 (54%), Gaps = 80/775 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL++F++NGH +PSS ++P +DPTL+FTN+GM FK+IF G P ++ Sbjct: 16 VRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAKLKSA 75 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK + LD Sbjct: 76 VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKVYGLD 135 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 +RLY+T + + D EA LW + +G+ D I+ DNFW M + GPCGPCS Sbjct: 136 PQRLYVTYFEGHEEGGLEPDLEAKALW-RAAGVPEDHILPGNMKDNFWEMGDQGPCGPCS 194 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ +++ + LP +DTGMG Sbjct: 195 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMGF 250 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ +VLQ+K++NYD D+F L A + +TG + Y G + I +RV+ DH+R+ Sbjct: 251 ERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGMFGADDSDGIDTAYRVVADHVRT 310 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG+ P ++GRGYV+RR++RR YAR E ++P L ++G +PE Sbjct: 311 LTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFPE 370 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 L + + + E L E+ F KTLDRG + + + D+ L+G ++LYDT G P Sbjct: 371 LKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGFP 430 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + + RGL ID + F EE R RA+ S G +K AT Sbjct: 431 VDLTRLMAEERGL-NIDDLEF----EEARLRAKEASKG--------------QKKSATGT 471 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEI---VEEAVSGQ 509 + D+ K K + P D + +++ +KAI + G+ Sbjct: 472 VKLDVHDLGKLEK-----MNDVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGE 526 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTE 568 ++ ++ D+T FYAE GGQ DTG I DG L++ DVQ A G +H ++ G Sbjct: 527 QIGIILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYA-GYVLHTGFMKYGSFSIG 585 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 +++ D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H +T Sbjct: 586 DAVLCEYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVT 645 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR---------- 677 EL+ IE+ + I QN V ++ + A SG A+ G Y D VR Sbjct: 646 EKELEKIEEISTEYIRQNCDVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVEVEE 705 Query: 678 -VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + +VE S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A Sbjct: 706 ILKNVEDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDA 760 >gi|114663431|ref|XP_001169474.1| PREDICTED: alanyl-tRNA synthetase isoform 1 [Pan troglodytes] gi|114663433|ref|XP_001169520.1| PREDICTED: alanyl-tRNA synthetase isoform 2 [Pan troglodytes] Length = 968 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 295/801 (36%), Positives = 428/801 (53%), Gaps = 72/801 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++ +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMGLELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G A Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNAIRGFFATLVDVVVQSLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ I +GL +D+ F EE+R A+ S G G+G + I + Y + Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472 Query: 457 FIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 RG + + K L N V++++ A+ ++ VEE +GQ+ V Sbjct: 473 LRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVSTGQECGV 527 Query: 514 VFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 V D+T FYAE GGQ+ D G + D + + Q + G +V H G L+ Sbjct: 528 VLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKV 585 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T + Sbjct: 586 GDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAM 644 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681 ++ ++K E+ N++I V T+ A A G A+ Y D VRVVS+ Sbjct: 645 STQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVS 704 Query: 682 EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L Sbjct: 705 ELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL 764 Query: 736 MGQDEKLKSLASFLKVSQGNV 756 K +S+ L V + V Sbjct: 765 ----RKAESMKKCLSVMEAKV 781 >gi|159123802|gb|EDP48921.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus A1163] Length = 1011 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 288/775 (37%), Positives = 425/775 (54%), Gaps = 80/775 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL++F++NGH +PSS ++P +DPTL+FTN+GM FK+IF G P ++ Sbjct: 66 VRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAKLKSA 125 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK + LD Sbjct: 126 VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKVYGLD 185 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 +RLY+T + + D EA LW + +G+ D I+ DNFW M + GPCGPCS Sbjct: 186 PQRLYVTYFEGHEEGGLEPDLEAKALW-RAAGVPEDHILPGNMKDNFWEMGDQGPCGPCS 244 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ +++ + LP +DTGMG Sbjct: 245 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMGF 300 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281 ER+ +VLQ+K++NYD D+F L A + +TG + Y G + +RV+ DH+R+ Sbjct: 301 ERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGRFGADDSDGIDTAYRVVADHVRT 360 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG+ P ++GRGYV+RR++RR YAR E ++P L ++G +PE Sbjct: 361 LTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFPE 420 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 L + + + E L E+ F KTLDRG + + + D+ L+G ++LYDT G P Sbjct: 421 LKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGFP 480 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + + RGL ID + F EE R RA+ S G +K AT Sbjct: 481 VDLTRLMAEERGL-NIDDLEF----EEARLRAKEASKG--------------QKKSATGT 521 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEI---VEEAVSGQ 509 + D+ K K + P D + +++ +KAI + G+ Sbjct: 522 VKLDVHDLGKLEK-----MNDVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGE 576 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTE 568 ++ ++ D+T FYAE GGQ DTG I DG L++ DVQ A G +H ++ G Sbjct: 577 QIGIILDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYA-GYVLHTGFMKYGSFSIG 635 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 +++ D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H +T Sbjct: 636 DAVLCEYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVT 695 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR---------- 677 EL+ IE+ + I QN V ++ + A SG A+ G Y D VR Sbjct: 696 EKELEKIEEISTEYIRQNCDVYSQEVPLATARRISGVRAVFGETYPDPVRVVSVGVEVEE 755 Query: 678 -VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + +VE S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A Sbjct: 756 ILKNVEDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDA 810 >gi|112984224|ref|NP_001037452.1| alanyl-tRNA synthetase, cytoplasmic [Bombyx mori] gi|135089|sp|P21894|SYAC_BOMMO RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|155955|gb|AAA27821.1| transfer RNA-Ala synthetase [Bombyx mori] Length = 967 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 295/829 (35%), Positives = 438/829 (52%), Gaps = 77/829 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59 + IR TF++FF K GH+ + SSS IP +DPTL+F N+GM FK IF G P Y Sbjct: 8 NEIRKTFIDFFIKKGHKYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGSVDPNSDMAQYI 67 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 V QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+LLT F Sbjct: 68 RVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWELLTDVFK 127 Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L + RLY+T ++ D E +W + G+ I+ + DNFW M ETGPCGP Sbjct: 128 LSRERLYVTYFEGDPSSGLEPDLECRNIWLNL-GVPEAHILPGSMKDNFWEMGETGPCGP 186 Query: 172 CSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 CSE+ +D+ G+ L + +EIWNLVF+QF ++ +LP ID G+GL Sbjct: 187 CSELHYDRIGDREAAHLVNMDDPD--VLEIWNLVFIQFNRETDGSLKLLPTKHIDCGLGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281 ER+ +V+Q K NYD D F + +A E TG++ Y G V+ +RV+ DH R+ Sbjct: 245 ERLVSVIQNKRANYDTDFFMPIFKAIENATGVRPYSGKVGVDDVDGIDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPEL 340 + ++DG P N GRGYVLRRI+RRA+ YA +P L+ + +G +PE+ Sbjct: 305 LTIALSDGGCPDNTGRGYVLRRILRRAVRYASEKLNAKPGFFGSLVYTVVELLGDVFPEI 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + I + E+ +F KTL RG LL + L + L GDVA++LYDT+G P+D+ Sbjct: 365 KKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTIEKLNNSKTLPGDVAWRLYDTYGFPIDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG- 459 Q ++C +D+ + E+ R ++ S G +G + I + Q G Sbjct: 425 TQ-LMCEEKGLNVDM----EGYEKSRKESQLVSQGKAAGQEDLIALDV-HAISHLQDTGI 478 Query: 460 --------YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 Y+ L S D+ L P ++ + A+ + E V E SGQ+ Sbjct: 479 PATDDSPKYNYLPSST----DKDALYTFAP------CTAKIVALRKNKEFVSEISSGQEC 528 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 V+ D+T FYAE GGQ+ D G + + + + +VQ K G +V HA GIL+ Sbjct: 529 GVILDRTSFYAEQGGQIFDEGYMVKIDDETVEFTVKNVQVK--GGYVLHAGKVEGILKVG 586 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 +L L ID + RR + NH+ TH+L++ L +LG+ Q GS + PD LRFD T+ P+T Sbjct: 587 DTLSLHIDTERRRLVMNNHTGTHVLNNVLRKVLGNDSDQRGSLVMPDRLRFDFTNKGPMT 646 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR---------- 677 ++K E+ + +IIA+N V + +A +G A+ Y D VR Sbjct: 647 IKQIKDTENEIKEIIAKNKTVYANYTSLSEAKKINGLRAMFDEHYPDPVRVVSVGVPVED 706 Query: 678 -VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARS 733 + + + G S CGG+H+ T I IVSE I GIRRI A+TG +A + Sbjct: 707 LIKNPDAPTGFETSVEFCGGSHLHRTSHIGEYVIVSEEGIAKGIRRIVAVTGPEAIKAIN 766 Query: 734 HLMGQDEKLKSLASFLK-----VSQGNVVGRVEEIWEEYRKLQLIHAKR 777 L + ++ ++A+F+K +S V ++ ++ E + Q+ + K+ Sbjct: 767 KLSVLENEVNNVANFIKEQNESISHKEVSKKIVDLTNEISQAQISYWKK 815 >gi|302923886|ref|XP_003053770.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256734711|gb|EEU48057.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 956 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 334/966 (34%), Positives = 490/966 (50%), Gaps = 98/966 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF---TGQEKPV--Y 58 + +R TFLE+F++ GH ++PSSS++P NDPTL+FTN+GM FK IF G+ P+ Sbjct: 10 AARVRQTFLEYFEQRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTIGKTDPMAGL 69 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 +A QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ A+Q +W+LLTK + Sbjct: 70 KAAVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAVQYSWELLTKVY 129 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD RLY+T ++ DE EA LW + G+ D I+ DNFW M + GPCG Sbjct: 130 GLDPARLYVTYFEGDEKLKLEPDLEAKDLWLSV-GVPEDHILPGNMKDNFWEMGDQGPCG 188 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG + + + +EIWN VFMQ+++Q LP IDTG Sbjct: 189 PCSEIHYDK----IGGRNAANLVNMDDPMVVEIWNNVFMQYDRQKDGSLKSLPAKHIDTG 244 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDH 278 MG ER+ + LQ +NY D F L + E+VTG KY ++ +RV+ DH Sbjct: 245 MGYERLVSALQNTVSNYATDCFTPLFKKIEEVTGARPYSDKYGKDDADGIDTAYRVVADH 304 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSA 336 +R+ SF IADG +P N+GRGYV+RR++RR + YAR + +LPAL +MG Sbjct: 305 IRTLSFSIADGAVPNNDGRGYVVRRVLRRGVRYARKYFNADIGAFFSKILPALVDQMGEQ 364 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTH 394 +PEL++ + I+E L E+ F +TLDRG + + KD + L GDV ++LYDT Sbjct: 365 FPELVKKQQDIKEILDEEEVAFARTLDRGEAQFEKYAAQAVKDGSKKLEGDVVWRLYDTF 424 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + R L ID + +E R +AR S + ++ + Sbjct: 425 GFPVDLTRLMAEERSLE-ID----DAEVEAARIKAREASKAVKESVQTFSKLNVHQIAEL 479 Query: 455 TQFIGYDLLR-GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 Q + + +KF++ D K Q L + +K+ +I E+ G + Sbjct: 480 EQQLKVERTNDDAKFLQGDSKGKVQ-----LIYDGKTFLKST---KDIPEKTALG----L 527 Query: 514 VFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D T FYAE+GGQ+ DTG I D + DVQ G +H +E G L + ++ Sbjct: 528 LLDNTNFYAESGGQVADTGRIVIDDVAEFNVLDVQNFG-GYILHSGYIEYGALNSGDEVI 586 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R + NH+ TH+L+H+L +LG + Q GS + + LRFD +H + EL Sbjct: 587 CEYDELRRSPIRNNHTGTHILNHSLREVLGDEIHQKGSLVDNEKLRFDFSHKTGVKIEEL 646 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684 K IED N+ I + P+ ++ ++ + A G A+ G Y + VRVVS+ + Sbjct: 647 KKIEDRSNEYIRRGSPIFSKDVDLDLARQIEGCRAVFGETYPNPVRVVSIGKDIDEMLAD 706 Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSH 734 + +S CGGTHV TG I L ++ ES I GIRRI A TG QR + Sbjct: 707 PKNVEWRQYSVEFCGGTHVEQTGLIKDLILIEESGIAKGIRRIIAYTGEAAHQVQREAAE 766 Query: 735 LMGQDEKLKSLASFLKVSQGNVVG------------------RVEEIW----EEYRKLQL 772 + + L+ L K SQ V R ++I E +K Q Sbjct: 767 FAKKLDALEKLDFAEKESQVKAVSVELSQLTISTLTKDELNKRFQKISTAVVAEQKKRQK 826 Query: 773 IHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISK 832 AK L ++ ++ A F+ + ++K + V+ Q K + + L G SK Sbjct: 827 AEAKTALDTVLKHFKANEDAKW-FVGRLPIGANAKAVGEVVKHFQGKDKEKSVYLFGGSK 885 Query: 833 EKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 E+ A V + V T A A ++V+GG GG P Q G D + Sbjct: 886 EEGAVVHGVYVGTHLSSQGVTAEQWAASVSEVIGGRSGGKEP-TRQGQGTKPENLDDGVE 944 Query: 891 GVASFL 896 +L Sbjct: 945 TATKWL 950 >gi|310789965|gb|EFQ25498.1| tRNA synthetase class II [Glomerella graminicola M1.001] Length = 955 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 337/977 (34%), Positives = 494/977 (50%), Gaps = 121/977 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVY--QAV 61 +R TFLEFF+K GH ++PSSS++P NDPTL+FTN+GM FK IF G + P+Y + Sbjct: 11 VRKTFLEFFEKRGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTISKADPMYPLKRA 70 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +W+LLTK + LD Sbjct: 71 TDTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEWSWELLTKVYGLD 130 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + + D EA LW+ + G+ D I+ DNFW M + GPCGPCS Sbjct: 131 PDRLYVTYFEGNPDMGLEPDLEAKGLWQSV-GVPEDHILPGNMKDNFWEMGDQGPCGPCS 189 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 E+ +D+ GG S +++ +EIWN VF+Q+++Q + LP +DTGMG Sbjct: 190 EVHYDK----IGGRNASDLVNQDDPMVVEIWNNVFIQYDRQPDRSLKSLPAKHVDTGMGF 245 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRS 281 ER+ + LQ +NY D+F L + E+VTG KY +++ +RVI DH+R Sbjct: 246 ERLVSALQNTVSNYATDIFTPLFKRIEEVTGARPYTDKYGADDVDGIDTAYRVIADHIRL 305 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F ++DG +P N+GRGYV+RR++RR + YAR E +LPAL +MG +PE Sbjct: 306 LTFSMSDGAVPNNDGRGYVVRRVLRRGVRYARKYFNAEIGSFFSKILPALVDQMGEQFPE 365 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLP 397 +++ + I E L E+E F +TLDRG + + K ++ L+G ++LYDT G P Sbjct: 366 IVKKQDDIREILDEEEEAFARTLDRGEAQFEKYANAAIKKGEKKLSGAEVWRLYDTFGFP 425 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 +D+ + + R L ID A ++ R S+ +S+ + L+++ Sbjct: 426 VDLTKLMAEERKLE-IDDDEVKAAQDKAREASKVVKNSVQTFAKLNVHQIAELEQQLNVA 484 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + +KF+K D K Q L VK+ +I E G ++ Sbjct: 485 R-----TDDDAKFVKGDSKAKVQ-----LIYDGKGFVKST---KDIAENTPLG----LLL 527 Query: 516 DQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE+GGQ+ DTG I D ++ DVQ G VH+ +E G+L + ++ Sbjct: 528 DKTNFYAESGGQVADTGRIVIDDVAEFKVLDVQNHG-GYIVHNGYLEYGVLSSGNEVICE 586 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 D R + NH+ATH+L+H+L +LG V+Q GS + + LRFD +H +T ELK Sbjct: 587 YDELRRSPIRNNHTATHILNHSLREVLGDDVNQKGSLVDNEKLRFDFSHKTGVTIPELKK 646 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKY--------------------- 672 IED N I QN + + ++ + A G A+ G Y Sbjct: 647 IEDFSNSYIRQNGKIYAKEVDLDLAKGIEGVRAVFGETYPNPVRVVSVGVDVDTLLANPK 706 Query: 673 NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 N R +SVE+ CGGTHV TG I L IV ES I GIRRI A TG A Sbjct: 707 NPEWRKISVEF----------CGGTHVDQTGLIKDLVIVEESGIAKGIRRIIAYTGDAAH 756 Query: 733 SHLMGQDEKLKSLASF------------LKVSQG-------------NVVGRVEEI---- 763 DE K L + +K +Q ++ R ++I Sbjct: 757 QVQREADEFSKRLDALEVLPFGPEKEQEIKTTQHALNQLTISTLTKEDIKKRFDKIIKAV 816 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 +E +K Q AK L V +K + F+ + ++K + V+ Q K + Sbjct: 817 TDEQKKRQKAEAKTALDTVVAHFDKNKDSKW-FVGQLPISANAKAIGEVVKHFQSKDKER 875 Query: 824 IIMLVGISKEKK--ASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 + L G SK + A + V T A A ++++GG GG P Q G Sbjct: 876 SVYLFGGSKNEGSVAHGVYVGTHLSSQGVTAEQWAAQVSEIVGGKSGGKEP-TRQGQGTK 934 Query: 882 GNKADQAIAGVASFLKK 898 D+A+A +LK+ Sbjct: 935 AENLDEAVATAEKWLKE 951 >gi|155371881|ref|NP_001094545.1| alanyl-tRNA synthetase, cytoplasmic [Bos taurus] gi|151553989|gb|AAI48084.1| AARS protein [Bos taurus] gi|296478238|gb|DAA20353.1| alanyl-tRNA synthetase [Bos taurus] Length = 968 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 289/785 (36%), Positives = 420/785 (53%), Gaps = 66/785 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 10 IRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF + Sbjct: 70 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPCGPCS Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSRILPGNMKDNFWEMGDTGPCGPCS 188 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDTGMGL Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH R+ Sbjct: 245 ERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGRVGAEDADGIDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK--EKYGATQFI 458 I +GL +D+ F+ E+R A+ S G G+G + I + E+ Sbjct: 425 TALIAEEKGLV-VDMDGFD----EERKLAQLKSQGKGAGGEDLIMLDIYAIEELREKGLE 479 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 D + + + + + V A+ + VEEA +GQ+ VV D+T Sbjct: 480 ATDDSPKYSYHSDSSGTYVFESAV-------ATVMALRRDRMFVEEASTGQECGVVLDKT 532 Query: 519 PFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 FYAE GGQ D G + D + + Q + G +V H G L+ + Sbjct: 533 CFYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVR--GGYVLHIGTLYGSLKVGDQVR 590 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++ Sbjct: 591 LFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQI 649 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----EYED- 685 K E+ N++I PV T + A A G A+ Y D VRVVS+ E D Sbjct: 650 KKAEEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDD 709 Query: 686 -----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ L + Sbjct: 710 PSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAES 769 Query: 741 KLKSL 745 KSL Sbjct: 770 LKKSL 774 >gi|28493343|ref|NP_787504.1| alanyl-tRNA synthetase [Tropheryma whipplei str. Twist] gi|28572546|ref|NP_789326.1| alanyl-tRNA synthetase [Tropheryma whipplei TW08/27] gi|41018202|sp|Q83GD1|SYA_TROWT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|41018203|sp|Q83HV0|SYA_TROW8 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|28410678|emb|CAD67064.1| alanyl-tRNA synthetase [Tropheryma whipplei TW08/27] gi|28476384|gb|AAO44473.1| alanyl-tRNA synthetase [Tropheryma whipplei str. Twist] Length = 880 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 312/914 (34%), Positives = 494/914 (54%), Gaps = 78/914 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF K GH++ PS+SLI NDP++MFT +GM+PF F E P + V + Sbjct: 3 TSDLRLLFLDFFAKRGHKVSPSASLIS-NDPSVMFTIAGMLPFIQCFLALEPPPHPRVVS 61 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 VQKC+R +D+D VG+T RH TFF+M+GNFSFG YFK+ AI+ AW+ L E DL Sbjct: 62 VQKCIRT----SDIDEVGKTPRHGTFFQMMGNFSFGDYFKKEAIEYAWEFLLSELDLAPD 117 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++T++ +D+E+ K W + G+ +++ + + NFWS + GP GPCSE+F+D Sbjct: 118 RLWVTIHGDDKESEKFWL-LCGVPQERVQSL--DSNFWSTGKAGPAGPCSEVFYDLHG-- 172 Query: 184 PGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI-LPKMSIDTGMGLERMATVLQEKTN 242 G PG + +RY+E+WNLVFMQ + N LPK +DTGMGLER+A + Q Sbjct: 173 -GPGPGPEGDPDRYLEVWNLVFMQNLRDNDGHIISSLPKKCVDTGMGLERIAMITQGVGT 231 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 YD D K ++ + ++G +Y + + ++ RV+ DH+RSS L+ADG+ P+NEGRGY+ Sbjct: 232 IYDTDELKPILDEAGYISGKRYGKDRRDDISLRVLADHIRSSLMLVADGLRPSNEGRGYI 291 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 LRR++RR++ A+LLG E L M YPEL I++ E++ F + Sbjct: 292 LRRLLRRSVRAAKLLGIQENCFDQLFAKAAQVMKVGYPELEGKLAEIKQVACLEEQSFSR 351 Query: 361 TLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 L+ G LL S + ++GD+AF+L+DTHG P+D++ +I GL +D+ F Sbjct: 352 ALNAGTQLL--SRSMSSSKKRVSGDLAFRLHDTHGFPIDLITEIAKDSGL-DVDMDGFFT 408 Query: 421 ALEEQRSRARA---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLC 477 ++EQ+ R+RA S + S TT + L+ + F+GY++L+ Sbjct: 409 LMKEQKDRSRAALSRSKPIVSDTTG--YEGLR-----SNFLGYEMLQ------------- 448 Query: 478 QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD 537 V + + A+V+ G I+ A G V++ +QTPFYA AGGQ D G D Sbjct: 449 ----------VDTKITALVKDGTILTSAKQGDCVDIALEQTPFYATAGGQEADRGFIESD 498 Query: 538 GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 ++ V G+ VH + G++ + + ++D NR +H+ATH++H + Sbjct: 499 NFSGKVVTVFSPLPGLTVHRCEIVSGLVVSGEVVRASVDSANRFAACQSHTATHVIHAVV 558 Query: 598 STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRE 657 + GS Q GS LRFD + S T ++ +E+ N I L + + E Sbjct: 559 REMFGSTSVQMGSYNRAGYLRFDFSCSYAPTDSQRIELEERANRAIQSCLEISSTYTTLE 618 Query: 658 DAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 A+ASGA AL G +Y D VR+V + GG S LC GTH+ ++ EI ++ +VSE+S+ Sbjct: 619 KAVASGAIALFGERYGDTVRMVEI----GGPWSRELCAGTHLRNSSEIAVVSLVSETSVA 674 Query: 718 AGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR--------- 768 +GIRR+E +TG A SH + + ++ L ++ + G ++++ E + Sbjct: 675 SGIRRVECLTGFDAFSHFAQERALVDTVMRTLGATRQEMEGAIDDLRENLKRSKHALQTA 734 Query: 769 --KLQLIHAKRKLQLNVEDLSCHK--IADVN-FMSHII---SEVDSKELKSVMDALQKKI 820 K A R LQ + +S + IAD++ F+S + E ++++++V +K + Sbjct: 735 KDKFLSAFAPRLLQ-EFKSVSSVRILIADLSKFLSGPLFSPFEFTAEDIRAVTLRCKKLL 793 Query: 821 QSGIIMLVG--ISKEKKASVLIVVTE---DLLDRFNAVDLARLSAKVLGGGGGGGRPHMA 875 + ++L+ IS A+ I ++ +D +A +L ++ K L G GGGR A Sbjct: 794 EEPHVLLLAAVISGRVHAACSIDLSSVKLSCMDDLSANNLIKVFLKTL-DGSGGGRADFA 852 Query: 876 QSGGPNGNKADQAI 889 Q G N D A+ Sbjct: 853 QGAGWNAKLLDSAL 866 >gi|114663435|ref|XP_511075.2| PREDICTED: alanyl-tRNA synthetase isoform 3 [Pan troglodytes] Length = 894 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 295/801 (36%), Positives = 428/801 (53%), Gaps = 72/801 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++ +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMGLELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + +ADG P N GRGYVLRRI+RRA+ YA L L+ + +G A Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNAIRGFFATLVDVVVQSLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ I +GL +D+ F EE+R A+ S G G+G + I + Y + Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472 Query: 457 FIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 RG + + K L N V++++ A+ ++ VEE +GQ+ V Sbjct: 473 LRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVSTGQECGV 527 Query: 514 VFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 V D+T FYAE GGQ+ D G + D + + Q + G +V H G L+ Sbjct: 528 VLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGDLKV 585 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T + Sbjct: 586 GDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAM 644 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681 ++ ++K E+ N++I V T+ A A G A+ Y D VRVVS+ Sbjct: 645 STQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVS 704 Query: 682 EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L Sbjct: 705 ELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL 764 Query: 736 MGQDEKLKSLASFLKVSQGNV 756 K +S+ L V + V Sbjct: 765 ----RKAESMKKCLSVMEAKV 781 >gi|74196486|dbj|BAE34378.1| unnamed protein product [Mus musculus] Length = 968 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 292/795 (36%), Positives = 424/795 (53%), Gaps = 80/795 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 IR F+ FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 10 IRERFINFFRRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF + Sbjct: 70 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T DE E ++W+ + GL +I+ DNFW M +TGPCGPCS Sbjct: 130 VERLYVTYLGGDEAAGLEPDLECRQIWQNL-GLDEARILPGNMKDNFWEMGDTGPCGPCS 188 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVF+Q+ +++ LPK SIDTGMGL Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRESDGVLKPLPKKSIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH R+ Sbjct: 245 ERLVSVLQNKMSNYDTDLFMPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 I +GL +D+ F EE+R A+ S G G+G + I + Sbjct: 425 TGLIAEEKGLV-VDMNGF----EEERRLAQLKSQGKGAGDEDLIMLDI---------YAI 470 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVS---------SIVKAIVQQGEIVEEAVSGQKV 511 + LR D P + + S + V A+ ++ V+E V+GQ+ Sbjct: 471 EELRAKGLEATD-----DSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGIL 565 VV D+T FYAE GGQ+ D G + D + + Q + G +V H G L Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGNL 583 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 + + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T Sbjct: 584 KVGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKG 642 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--- 681 +++ ++K E+ VN +I PV T+ A A G A+ Y D VRVVS+ Sbjct: 643 AMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVP 702 Query: 682 --EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ Sbjct: 703 VSELLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQK 762 Query: 734 HLMGQDEKLKSLASF 748 L + KSL++ Sbjct: 763 ALRKSETLKKSLSAM 777 >gi|70983336|ref|XP_747195.1| alanyl-tRNA synthetase [Aspergillus fumigatus Af293] gi|66844821|gb|EAL85157.1| alanyl-tRNA synthetase, putative [Aspergillus fumigatus Af293] Length = 1011 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 286/770 (37%), Positives = 422/770 (54%), Gaps = 70/770 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL++F++NGH +PSS ++P +DPTL+FTN+GM FK+IF G P ++ Sbjct: 66 VRDTFLDYFRQNGHTFVPSSPVVPLSDPTLLFTNAGMNQFKSIFLGTVDPQSDFAKLKSA 125 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFKE AI+ +W+LLTK + LD Sbjct: 126 VNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKEDAIRYSWELLTKVYGLD 185 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 +RLY+T + + D EA LW + +G+ D I+ DNFW M + GPCGPCS Sbjct: 186 PQRLYVTYFEGHEEGGLEPDLEAKALW-RAAGVPEDHILPGNMKDNFWEMGDQGPCGPCS 244 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ +++ + LP +DTGMG Sbjct: 245 EIHYDR----IGGRNAAHLVNQDDPNVLEIWNNVFIQYNRESDRSLRPLPNKHVDTGMGF 300 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281 ER+ +VLQ+K++NYD D+F L A + +TG + Y G + +RV+ DH+R+ Sbjct: 301 ERLVSVLQDKSSNYDTDVFSPLFNAIKNITGAREYRGRFGADDSDGIDTAYRVVADHVRT 360 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG+ P ++GRGYV+RR++RR YAR E ++P L ++G +PE Sbjct: 361 LTFAISDGVTPNSDGRGYVVRRVLRRGARYARKYFQVEIGNFFSKIVPTLVEQLGDMFPE 420 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLP 397 L + + + E L E+ F KTLDRG + + + D+ L+G ++LYDT G P Sbjct: 421 LKKKQHDVMEILDEEEISFAKTLDRGERQFENYAQQAKIKGDDKLHGADVWRLYDTFGFP 480 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + + RGL ID + F EE R RA+ S G +K AT Sbjct: 481 VDLTRLMAEERGL-NIDDLEF----EEARLRAKEASKG--------------QKKSATGT 521 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVV 514 + D+ K K + +++ +KAI + G+++ ++ Sbjct: 522 VKLDVHDLGKLEKMNVVPKTDDSAKFGKGNITAEIKAIYHGKNFHSSTAQIPDGEQIGII 581 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+T FYAE GGQ DTG I DG L++ DVQ A G +H ++ G +++ Sbjct: 582 LDRTNFYAEQGGQENDTGRIIIDGRAELEVGDVQLYA-GYVLHTGFMKYGSFSIGDAVLC 640 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H +T EL+ Sbjct: 641 EYDELRRWPIRNNHTGTHILNFALRRVLGDSVEQKGSLVAAEKLRFDFSHKSAVTEKELE 700 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSV 681 IE+ + I QN V ++ + A SG A+ G Y D VR + +V Sbjct: 701 KIEEISTEYIRQNCDVYSQEVPLATARRISGVRAVFGETYPDPVRVVSVGVEVEEILKNV 760 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E S CGGTHV TG+I L I+ E+ I GIRRI A+TG+ A Sbjct: 761 EDPRWLEVSIEFCGGTHVQKTGDIKDLIILEENGIAKGIRRIIAVTGEDA 810 >gi|50286987|ref|XP_445923.1| hypothetical protein [Candida glabrata CBS 138] gi|49525229|emb|CAG58842.1| unnamed protein product [Candida glabrata] Length = 956 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 279/769 (36%), Positives = 408/769 (53%), Gaps = 68/769 (8%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT--- 62 ++R TF+++F++ H+ + SS ++P +DPTL+FTN+GM +K IF G P T Sbjct: 13 NVRKTFMDYFEEKNHKYVKSSPVVPFDDPTLLFTNAGMNQYKPIFLGTVDPSSDFYTLKR 72 Query: 63 --TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI AW LLT+ + + Sbjct: 73 AYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIDYAWKLLTEVYGI 132 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 RLY+T + + D EA LWKK+ G+ D I+ DNFW M + GPCGPC Sbjct: 133 PADRLYVTYFEGDAKQGLEPDTEALDLWKKV-GVPEDHILPGNAKDNFWEMGDQGPCGPC 191 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI +D+ GG +S ++ +E+WNLVFMQF ++ LP IDTGMG Sbjct: 192 SEIHYDR----IGGRNAASLVNQDDPDVLEVWNLVFMQFNREQDGSLKSLPAKHIDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLR 280 ER+ +VLQ+ +NYD D+F L +++TG + Y G +NI +RV+ DH+R Sbjct: 248 FERLVSVLQDVRSNYDTDVFMPLFARIQEITGARPYAGKFGDEDKDNIDTTYRVLADHVR 307 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSAYP 338 + F +ADG +P NEGRGYVLRRI+RR +AR + Y L P L ++ +P Sbjct: 308 TLVFALADGGVPNNEGRGYVLRRILRRGARFARKYMNYPIGNFFSSLAPTLIDQVKHIFP 367 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGL 396 E+ + + E L E+ F KTLDRG + + + + E L+G ++LYDT+G Sbjct: 368 EVAKDPSFLFEILDEEESSFSKTLDRGERIFEKYAAAASQTESKTLDGKQVWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ + + + L ID F +A +E ++ G + S+ E Sbjct: 428 PVDLTELMAEEQNLK-IDGPGFEKAKQESYEASKRGGQKGGDDLIKLNVHSIAE------ 480 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 L K D ++ I+K + + E + G+K ++ D Sbjct: 481 ------LNSENVPKTDDSFKYGNENVE-----GKILKLHDGEKFVTEISEPGKKYGIILD 529 Query: 517 QTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +T FYAE GGQ DTG I D + +VQ G H + G L + ++ + Sbjct: 530 KTCFYAEQGGQEYDTGKIVIDDKAEFSVENVQ-LYNGFVFHTGTLSEGKLSVDDVIIASY 588 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 D R + NH+ TH+L++AL LG+ + Q GS + P+ LRFD +H K +T E+ + Sbjct: 589 DELRRFPIKNNHTGTHILNYALKETLGNDIDQKGSLVAPEKLRFDFSHKKALTIEEVTKV 648 Query: 636 EDNVNDIIAQNLPVVTR--IMNREDAIASGAAALLGTKYNDRVRVVSV-----------E 682 E+ N+ I N V + ++ +I S A+ G Y D VRVVSV Sbjct: 649 ENICNEQIKNNYNVYYKDVPLDLAKSIYS-VRAVFGETYPDPVRVVSVGKPVDDLLANPS 707 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E+ G +S CGGTHV +TG+I I+ ES I GIRRI A+TG A Sbjct: 708 NEEWGKYSIEFCGGTHVKTTGDIKYFVILEESGIAKGIRRIVAVTGTEA 756 >gi|212541448|ref|XP_002150879.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224] gi|210068178|gb|EEA22270.1| alanyl-tRNA synthetase, putative [Penicillium marneffei ATCC 18224] Length = 1000 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 286/781 (36%), Positives = 419/781 (53%), Gaps = 92/781 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R F+++F++ GH +PSSS++P +DPTL+F N+GM +K+IF G P + +A Sbjct: 55 VRNEFIDYFKERGHTFVPSSSVVPVSDPTLLFANAGMNQYKSIFLGTVDPQSDFAHLKRA 114 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V + QKC+RAGGKHNDLD+VG+ N HHTFFEMLGN+SFG YFK AI +W+LLTK F L Sbjct: 115 VNS-QKCIRAGGKHNDLDDVGKDNYHHTFFEMLGNWSFGDYFKNEAITYSWELLTKVFGL 173 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D RLY+T ++ D EA +W+K+ G+ D I+ DNFW M + GPCGPC Sbjct: 174 DPSRLYVTYFEGDAQGGLEPDLEAKDIWRKV-GVPEDHILPGNMKDNFWEMGDQGPCGPC 232 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SE+ +D+ GG +S ++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 233 SEVHYDR----IGGRNAASLVNQDDPNVLEIWNNVFIQYNREADRSLRPLPNKHVDTGMG 288 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLR 280 ER+ +VLQ+K++NYD D+F L + +++TG + Y+G +RV+ DH+R Sbjct: 289 FERLVSVLQDKSSNYDTDVFMPLFRTIQEITGAREYQGRFGAEDADGVDTAYRVVADHVR 348 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 + +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +P Sbjct: 349 TLTFAISDGAYPNNEGRGYVIRRVLRRGARYARKYFNVEIGSFFSKIVPTLVNQMGGMFP 408 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGL 396 E+ + + + E L E+ F KTLDRG + + L+G ++LYDT G Sbjct: 409 EIKEKQDEVMEALNEEEVSFSKTLDRGEKQFENYAQQAKSKGLNKLHGADVWRLYDTFGF 468 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + RGL+ ID F EE R +A+ S G E + + + Sbjct: 469 PVDLTQIMAEERGLS-IDEAEF----EEARLKAKEASKGQKKAAAETVKLDVHD------ 517 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEV 513 +G L + K D P I+ S+VKAI ++ + G+++ V Sbjct: 518 -LG-KLDNMHEVPKTDDSSKFDSPKIE------SVVKAIYYSKSFIQTTADVPEGEQIGV 569 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE GGQ DTG +G L++ DVQ G +H ++ G L S+ Sbjct: 570 ILDRTNFYAEQGGQENDTGAIYINGKAELEVGDVQSYG-GYVLHTGFIKYGSLAVGDSVT 628 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D + R+ + NH+ TH+L+ AL +LG ++Q GS + + LRFD +H ++ EL Sbjct: 629 CEFDDRRRQPIRNNHTGTHILNFALREVLGDGINQKGSLVAAEKLRFDFSHKAGVSDKEL 688 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND----------------- 674 IE + I QN V ++ + A SG A+ G Y D Sbjct: 689 DQIERKSTEYIRQNCGVYSKEVPLATAREISGVRAVFGETYPDPVRVVSVGVEVEEILKD 748 Query: 675 ----RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 R +S+E+ CGGTHVS +GEI L I+ ES I GIRRI A+TG Sbjct: 749 VKDPRWNDISIEF----------CGGTHVSKSGEIRELVILEESGIAKGIRRIIAVTGDE 798 Query: 731 A 731 A Sbjct: 799 A 799 >gi|115432192|gb|ABI97370.1| AlaRS [Bos taurus] Length = 869 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 289/785 (36%), Positives = 420/785 (53%), Gaps = 66/785 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY-----QAV 61 IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 10 IRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRA 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF + Sbjct: 70 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIP 129 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + DE E ++W+ + GL +I+ DNFW M +TGPCGPCS Sbjct: 130 VERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSRILPGNMKDNFWEMGDTGPCGPCS 188 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDTGMGL Sbjct: 189 EIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTGMGL 244 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH R+ Sbjct: 245 ERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGRVGAEDADGIDMAYRVLADHART 304 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL Sbjct: 305 ITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPEL 364 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ Sbjct: 365 KKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK--EKYGATQFI 458 I +GL +D+ F+ E+R A+ S G G+G + I + E+ Sbjct: 425 TALIAEEKGLV-VDMDGFD----EERKLAQLKSQGKGAGGEDLIMLDIYAIEELREKGLE 479 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 D + + + + + V A+ + VEEA +GQ+ VV D+T Sbjct: 480 ATDDSPKYSYHSDSSGTYVFESAV-------ATVMALRRDRMFVEEASTGQECGVVLDKT 532 Query: 519 PFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 FYAE GGQ D G + D + + Q + G +V H G L+ + Sbjct: 533 CFYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVR--GGYVLHIGTLYGSLKVGDQVR 590 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++ Sbjct: 591 LFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMSTQQI 649 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----EYED- 685 K E+ N++I PV T + A A G A+ Y D VRVVS+ E D Sbjct: 650 KKAEEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDD 709 Query: 686 -----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 G + S CGGTH+ ++ IVSE +I GIRRI A+TG A+ L + Sbjct: 710 PSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALRKAES 769 Query: 741 KLKSL 745 KSL Sbjct: 770 LKKSL 774 >gi|221116701|ref|XP_002160302.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 998 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 289/796 (36%), Positives = 431/796 (54%), Gaps = 73/796 (9%) Query: 7 IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60 +R F++FF +K H +PSSS IP DPTL+F N+GM FK++F G P + Sbjct: 47 VRQDFIDFFVKKYDHIFVPSSSTIPHEDPTLLFANAGMNQFKSLFLGTADPNSDFAKLKR 106 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG +FK+ I +W+LLT + L Sbjct: 107 VVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDFFKKEIIAWSWELLTDVWGL 166 Query: 121 DQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSE 174 ++ R Y+T + DEEA + W ++ GL + ++ +NFW M ETGPCGPCSE Sbjct: 167 EKERFYVTYFGGADGVPADEEAKQFWLEL-GLPPNHVLPFGMKENFWEMGETGPCGPCSE 225 Query: 175 IFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 + +D+ GG S + + +E+WNLVF+QF ++ + LP +DTG+GLE Sbjct: 226 LHYDR----IGGRDASNLVNMDVPDVLEVWNLVFIQFNREVDGQLVPLPNQHVDTGLGLE 281 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK----------YEGNNIVNHRVIVDHLRS 281 R+ +VLQ K +NYD D+F A Q TG+K +G ++ +RVI DH+R+ Sbjct: 282 RIISVLQNKMSNYDTDVFTPYFDAIHQATGIKPYLGLVGPDDKDGVDMA-YRVIADHIRT 340 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPEL 340 + ++DG P N GRGYVLRRI+RRA+ +A +P + L+ +CT +GS YP + Sbjct: 341 LTVALSDGGRPDNVGRGYVLRRILRRAVRFATEKLNCKPGVFASLVDVVCTSLGSVYPNI 400 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 ++ I++ + E+ +F KTL RG L + D I+ GD+A++LYDT+G P D+ Sbjct: 401 LKDPQTIKDIINEEESQFLKTLARGRRLFNRTADKT-TDGIIAGDLAWRLYDTYGFPSDL 459 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + R L +D++ + + +A+A + G+ + +SL Sbjct: 460 TILMAEERNLK-VDMVGY------EVLKAKAQEMARARGSEVEDIYSLDVH-------AI 505 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTN-GVSSIVKAIVQ----QGEIVEEAVSGQKVEVVF 515 D L+ F++ D + N G S+ K IV + V+E +G K V+ Sbjct: 506 DELKTKGFVQTDESPKYNYEKDEHGNYGNFSLCKTIVTALRVNKQFVDEVTNG-KCGVLL 564 Query: 516 DQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQL DTG +G+ + + DVQ G +V H G L+ + + Sbjct: 565 DRTSFYAEQGGQLFDTGYINLGEEVEFAVNDVQ--IHGGYVLHVGNLVGTLKVGDKVTCS 622 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 ID RR L NH+ATHLL+ AL +L Q GS + PD LRFD T ++S ++K Sbjct: 623 IDESRRRSLMNNHTATHLLNFALRKVLVDDADQRGSLVAPDKLRFDFTAKGALSSEQVKM 682 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSVEYE------- 684 ED +II Q+ V + A+A G A+ Y D VRV+S+ Y+ Sbjct: 683 TEDITREIIKQDQKVFASASSL--AVAKNIQGLRAIFDEVYPDPVRVISIGYDLKDLIND 740 Query: 685 -DGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQD-- 739 G +S CGGTH+ STG+++ IVSE +I GIRRI ++TG A ++H Sbjct: 741 PQAGYKTSVEFCGGTHLKSTGDVVEFAIVSEEAISKGIRRIVSLTGSDALKAHKRANQLA 800 Query: 740 EKLKSLASFLKVSQGN 755 L + +++V + N Sbjct: 801 STLNEFSEYVEVQKNN 816 >gi|158298580|ref|XP_318757.4| AGAP009701-PA [Anopheles gambiae str. PEST] gi|157013952|gb|EAA14564.4| AGAP009701-PA [Anopheles gambiae str. PEST] Length = 946 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 321/971 (33%), Positives = 497/971 (51%), Gaps = 130/971 (13%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59 S IR+ FL+FF++ H + SSS+IP +DPTL+F N+GM FK IF G P + Sbjct: 8 SQIRSIFLDFFKEKEHLYVHSSSVIPLDDPTLLFANAGMNQFKPIFLGTVDPNSDMAKWV 67 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+LLT+ Sbjct: 68 RTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTERLK 127 Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L + RLY+T + + D E ++W K+ G+ + I+ + DNFW M ETGPCGP Sbjct: 128 LPKERLYVTYFGGHPESGLEPDLECREIWLKL-GVKEEHILPGSMKDNFWEMGETGPCGP 186 Query: 172 CSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 CSE+ FD+ G +P + + + +EIWNLVF+Q+ ++ +LPK ID GMG Sbjct: 187 CSELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNREQDSSLKLLPKKHIDCGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNIVN--------HRVIVDHLR 280 ER+ +V+Q+K +NYD D+F L A ++ TG Y+G + +RV+ DH R Sbjct: 244 FERLVSVIQDKRSNYDTDVFMPLFDAIQKGTGAAAYQGRVGADDSDGVDMAYRVLADHAR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339 + + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G +PE Sbjct: 304 TITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVDTVVQLLGETFPE 363 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 + + I+ + E+++F KTL RG LL+ ++ LG +++ GDVA++LYDT+G P+D Sbjct: 364 VRKDPQHIKNVINEEEQQFLKTLTRGRNLLNRTIAKLGNSKVIPGDVAWRLYDTYGFPID 423 Query: 400 IMQDILCARGLAGIDIISFNQALEEQ------RSRARAHSLGLG-SGTTEKIWFSLKEKY 452 + ++ ID+ + +A E + +++ ++ L G +E L+E+ Sbjct: 424 LTL-LMAEEKQMTIDMEGYEKAKHESYIISQGKEKSKTATIDLDVHGISE-----LQER- 476 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 + D ++ E L Q + + + A+ VEE +GQ+ Sbjct: 477 ---KVPATDDSFKYRYKAESIDPLAQY----VFEPCTGKIVALRFNNAFVEEVQAGQECG 529 Query: 513 VVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 V+ D+T FYAE+GGQ+ D G + + ++ V + G +H +VE G LR Sbjct: 530 VILDRTNFYAESGGQIYDQGFLVKVNDESSEFNVSLVYNRG-GYVLHIGVVE-GTLRVGD 587 Query: 570 SLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + +D RRQL++ NHSATH L+H+L +LG Q GS + P+ LRFD T+ +T Sbjct: 588 EVHCHMDVV-RRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKSAMT 646 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVS----V 681 ++ E +++ +N+ V + N A+A G ++ Y D VRV+S V Sbjct: 647 IEQVAEAERLTREVVKRNVQVYAKEANL--AVAKTIRGLRSVFDEVYPDPVRVISFGVPV 704 Query: 682 EY-------EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734 E E G ++S CGGTH+ +G ++ I +E +I GIRRI A+TG A Sbjct: 705 EQLEADPTGEAGVINSVEFCGGTHLHQSGHMVDFVITTEEAIAKGIRRIVALTGPEALKA 764 Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV 794 L + + L+ G+ GR E ++ H K+ ++L +D+S Sbjct: 765 LKKTELLEQELSKLRATIDGDKEGR------EAKE----HVKKIIEL-TDDVS------- 806 Query: 795 NFMSHIISEVDSKELKSVMDALQK-----------KIQSGIIMLVG-ISKEKKASVLIVV 842 I V EL++V+ L+K + SG++ +S+ K + +V Sbjct: 807 ---QATIPYVKKDELRTVLKGLKKALDDKERVARAAVASGVVEKAKELSQAHKDAPFLVQ 863 Query: 843 TEDLLDRFNAVDLA---------RLSAKVLG---------------GGGGGGRPHMAQSG 878 + L+ A+D A SA L GG GGG+P AQ+ Sbjct: 864 RLEALNNTKALDSALKEVRKVNPEQSALFLSGLKANEWISHIAPVMGGKGGGKPESAQAS 923 Query: 879 GPNGNKADQAI 889 G N +KAD+ + Sbjct: 924 GGNFDKADEIL 934 >gi|301102849|ref|XP_002900511.1| alanyl-tRNA synthetase, mitochondrial precursor [Phytophthora infestans T30-4] gi|262101774|gb|EEY59826.1| alanyl-tRNA synthetase, mitochondrial precursor [Phytophthora infestans T30-4] Length = 980 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 267/771 (34%), Positives = 410/771 (53%), Gaps = 69/771 (8%) Query: 5 SSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 + IR TF E+FQ H S ++P +DPTL+F N+GM +K IF GQ P + Sbjct: 29 ARIRKTFFEYFQNQKELPHTFYKSCPVVPLDDPTLLFINAGMNQYKPIFLGQVDPSHPMA 88 Query: 62 TTV-----QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ A+ L++ LLT+ Sbjct: 89 KLVRACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGNYFKKEAVHLSFTLLTE 148 Query: 117 EFDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 F +D+ RLY T + DE DEE ++W ++ L ++++ DNFW M + GP Sbjct: 149 VFGIDKDRLYATYFGGDEKQGLPSDEETREIW--LNYLPTERVLPFGCKDNFWEMGDVGP 206 Query: 169 CGPCSEIFFDQ------GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKM 222 CGPC+EI +D+ E + P IEIWN VF+QF ++ + LP Sbjct: 207 CGPCTEIHYDRIGNRDASELVNADRPD-------VIEIWNNVFIQFNREQDGKLVPLPHK 259 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG--------NNIVNHR 273 +DTGMG ER+A++LQ K +NYD D+F L A ++ T Y G + +R Sbjct: 260 HVDTGMGFERLASILQGKDSNYDTDVFTPLFAAIQKSTKAAPYTGKLGEEDPDKKDMAYR 319 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTE 332 V+ DH+R+ +F I DG +P+N+GRGYVLRRI+RRA+ Y + L + L+P + Sbjct: 320 VVADHVRTLTFAITDGAVPSNDGRGYVLRRILRRAVRYGQQFLNAPSGFLTELVPVVVNM 379 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKL 390 +G A+PEL+Q + +EE + E++ FG+TL++G+ + + + ++ G+ AF L Sbjct: 380 LGEAFPELVQKQKEVEEIILDEEKSFGRTLNKGIERFKKIAQGIREANKLVVPGEDAFFL 439 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE 450 YD+ G P+D+ + + G+ +DI + + + Q R++ GS + +E Sbjct: 440 YDSMGFPIDLTEIMAEEEGMT-VDIKGYEECMRLQSERSKMDRKKGGSNGARPLVLEARE 498 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG-- 508 + G + K + V + V +I + V+E +G Sbjct: 499 ---TSTLAGKHISATDDMAKYEWNV-------KTSAKVVAIFTTTESSSDFVDEVKAGDF 548 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 ++V V+ D+T FY++AGGQ+ DTG ++L + V+ A G +H + G ++ Sbjct: 549 ERVGVILDKTSFYSQAGGQIYDTGVLTASNLKLDVDSVESYA-GYVMHMGSIATGSIKVG 607 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 S+ +DY R +++ NH+ TH L+ AL +LG+ V Q GS + LRFD T++K + Sbjct: 608 DSVACEVDYARRAKIAPNHTMTHALNFALRKVLGTVVDQRGSLVDESRLRFDFTNNKALK 667 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------ 681 A+L +E +D+I Q L V T+ + +A G A+ G Y D VRVVS+ Sbjct: 668 PAQLAEVEAICDDLIKQQLEVYTQNSAQAEAKRIQGLRAVFGETYPDFVRVVSIGQPIAP 727 Query: 682 -----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 E S CGGTH+ +T E + E +I GIRR+ A T Sbjct: 728 MLEDPEKSKWSNFSVEFCGGTHLKNTKEAKRFVLYEEGAIAKGIRRVSAYT 778 >gi|194863135|ref|XP_001970293.1| GG23450 [Drosophila erecta] gi|190662160|gb|EDV59352.1| GG23450 [Drosophila erecta] Length = 966 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 319/968 (32%), Positives = 483/968 (49%), Gaps = 95/968 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LTK L Sbjct: 69 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTKRLALP 128 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + DE E ++W + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDEASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L A + TG Y+G +++ + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGPDDVDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVELLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + + L ID+ + A + + S G G+ E+I + + +Q Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + + K + + + GV +S + A+ + + V E SGQK +V D+T F Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536 Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE+GGQ+ D G + D + D G +H IVE G L+ L L ID + Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGIVE-GTLKVGDELELHIDVE 595 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTDQKGSLVVPEKLRFDFNSKAAMTIEQVAKTEQL 655 Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684 +++ +N+P+ + + A+A G ++ Y D VRV+S + E Sbjct: 656 TKEMVYKNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDDLEQNPDSE 713 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + + Sbjct: 714 AGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQE 773 Query: 745 LASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHAKR 777 + + G+ V+EI E E R L L +R Sbjct: 774 IVRLKATIDTDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKER 833 Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLVG 829 L+ V + + + N + ++ E ++K L + + ++ ++ M + Sbjct: 834 ALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLS 893 Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K D+ Sbjct: 894 VDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNFEKVDE 952 Query: 888 AIAGVASF 895 + + F Sbjct: 953 IVQLASKF 960 >gi|330794423|ref|XP_003285278.1| alanyl-tRNA synthetase [Dictyostelium purpureum] gi|325084730|gb|EGC38151.1| alanyl-tRNA synthetase [Dictyostelium purpureum] Length = 944 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 324/985 (32%), Positives = 495/985 (50%), Gaps = 132/985 (13%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 +V+ IR TF+EFF K H +PSS++IP +DPTL+F N+GM FK IF GQ P Sbjct: 2 DVNQIRKTFIEFFVNKAEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQA 61 Query: 57 -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + +AV + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI AW+LLT Sbjct: 62 KLKRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAISWAWELLT 120 Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + LD+ RLY+T + + D EA LW + L ++++ +NFW M + G Sbjct: 121 EVYGLDKERLYVTYFRGDPEKGLEPDNEAKNLW--LQYLPEERVLPFGMKENFWEMGDQG 178 Query: 168 PCGPCSEIFFDQGECIPG--GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 PCGPCSEI +D+ +PG G P + + IEIWNLVF+QF ++ + LP +D Sbjct: 179 PCGPCSEIHYDK---VPGRNGAPFVNADDPTLIEIWNLVFIQFNREADKSLRPLPNKHVD 235 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--------YEGNNIVN--HRVI 275 TGMGLER+ +++Q+ NYD D+FK + +A ++VTG E + V+ +RVI Sbjct: 236 TGMGLERLTSIIQKVPTNYDTDVFKPIFEAIQEVTGYPEPYGGKVGAEDSQQVDMAYRVI 295 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMG 334 DH+R+ SF IADG P+ +GRG VLRRI+RRA+ Y + L L+ + G Sbjct: 296 ADHIRTLSFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVVQNFG 355 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH 394 YPEL + I L E++ F KTL++G+ + ++ D +L+ A+ L Sbjct: 356 EFYPELRKKPEHIRMVLTREEDMFNKTLEKGIQEFEKMIKKT-TDGVLSAPNAYFLSTVC 414 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQ----RSRARAHSLGLGSGTTEKIWFSLKE 450 G P+D+ + +GL +DI F + E Q R R + L G W Sbjct: 415 GFPIDLTTIMAEEKGLK-VDIQGFEKLCEAQSEIDRKRQKEKKTELTLGAEANAW----- 468 Query: 451 KYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQK 510 L+ + D Q+ + T VKAI E V+ GQ Sbjct: 469 ------------LKNNNIKITDDSFKYQQKEVQTT------VKAIWNGKEFVDTVPKGQL 510 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA---------EGIFVH--HAI 559 +V + T FY E GGQ+ D G +L D QK A G +H + Sbjct: 511 CGIVLESTNFYPEQGGQIYDVG-------QLSFVDDQKTAFDVKDCKVFGGYVLHIGYLS 563 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 E L+ + T+DY R + NH++TH++++AL ++LG + Q GS + RF Sbjct: 564 YECTELKVGDKVESTVDYTRRSPIMSNHTSTHMVNYALKSVLGEGIEQRGSFVDASRFRF 623 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR- 677 D + + +T EL I+ VND+I + L V + + A +G A+ G Y D VR Sbjct: 624 DFSFGRAVTKDELAKIDQIVNDLIFKQLNVYAQEVPLAKAKTINGLRAVFGEVYPDPVRV 683 Query: 678 ----------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 + + + +S CGGTH+++T + L I+SE ++ AG+RRI A+T Sbjct: 684 VSVGVPVDQLIENPTNAEWANYSIEFCGGTHLTNTKQAELFTIISEETLGAGVRRIVAVT 743 Query: 728 GQRAR-SHLMGQDEKL--------------KSLASFLKVSQGNVVGRV--EEIWEEYRKL 770 G A +H + ++ +L K + + L+ + + + + + E ++L Sbjct: 744 GSEATAAHELNKELELRFNKALKLTGSELSKEIVALLETLKSSCISQAVRYNLVEAMKEL 803 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ------------K 818 Q I +R L VE+L + + + II E+ SK + +D + K Sbjct: 804 QSI--QRVLAKEVENLQILESSKIT--ERIIQELTSKPSELYVDLVNLGSNTTVITDTIK 859 Query: 819 KIQSG----IIMLVGISKEK-KASVLIVVTED-LLDRFNAVDLARLSAKVLGGGGGGGRP 872 KIQ+ +ML+ +EK K + + +V +D + + A ++ + GG GGG+ Sbjct: 860 KIQAKSNQTAVMLISPDEEKGKVTCIGIVPKDSPISKSVAANVWVSKVTEVLGGKGGGKA 919 Query: 873 HMAQSGGPNGNKADQAIAGVASFLK 897 +AQ G +K D+AI F K Sbjct: 920 EVAQGVGSKLDKIDEAILVARDFAK 944 >gi|194386694|dbj|BAG61157.1| unnamed protein product [Homo sapiens] Length = 992 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 295/808 (36%), Positives = 428/808 (52%), Gaps = 78/808 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISG-------LSADKIIRITTNDNFWS 162 F + RLY+T + DE E ++W+ + L KI+ DNFW Sbjct: 126 FGIPIERLYVTYFGGDEAAGLEADLECKQIWQNLGTYLYSFVRLDDTKILPGNMKDNFWE 185 Query: 163 MAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFIL 219 M +TGPCGPCSEI +D+ GG + +++ +EIWNLVF+Q+ ++ L Sbjct: 186 MGDTGPCGPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPL 241 Query: 220 PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------V 270 PK SIDTGMGLER+ +VLQ K +NYD DLF +A ++ TG + + + Sbjct: 242 PKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDM 301 Query: 271 NHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM-CYARLLGYTEPLMMHLLPAL 329 +RV+ DH R+ + +ADG P N GRGYVLRRI+RRA+ C L + L+ + Sbjct: 302 AYRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRCAHEKLNASRGFFATLVDVV 361 Query: 330 CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFK 389 +G A+PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ Sbjct: 362 VQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWL 421 Query: 390 LYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK 449 LYDT+G P+D+ I +GL +D+ F EE+R A+ S G G+G + I + Sbjct: 422 LYDTYGFPVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI- 475 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKV---LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV 506 Y + RG + + K L N V++++ A+ ++ VEE Sbjct: 476 --YAIEELRA----RGLEVTDDSPKYNYHLDSSGSYVFENTVATVM-ALRREKMFVEEVS 528 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIV 560 +GQ+ VV D+T FYAE GGQ+ D G + D + + Q + G +V H Sbjct: 529 TGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGT 586 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 G L+ + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD Sbjct: 587 IYGDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFD 645 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679 T +++ ++K E+ N++I V T+ A A G A+ Y D VRVV Sbjct: 646 FTAKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVV 705 Query: 680 SV-----EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 S+ E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG Sbjct: 706 SIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTG 765 Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNV 756 A+ L K +SL L V + V Sbjct: 766 AEAQKTL----RKAESLKKCLSVMEAKV 789 >gi|322379407|ref|ZP_08053777.1| alanyl-tRNA synthetase [Helicobacter suis HS1] gi|321148116|gb|EFX42646.1| alanyl-tRNA synthetase [Helicobacter suis HS1] Length = 862 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 294/758 (38%), Positives = 419/758 (55%), Gaps = 77/758 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I+ FLE+F+ H L+PSSSL+P D +L+FTN+GMV FK+IF G+ KP T+ Q Sbjct: 3 IKKAFLEYFKNLNHLLVPSSSLVP-QDASLLFTNAGMVQFKDIFLGKAKPFCNKATSAQL 61 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF YFKE AI A++ + + + D + +Y Sbjct: 62 CMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAFEFVHRHLNFDSKDIY 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 I+V+++D+EA+KLW+K +S I + DNFW MA+ GPCG CSEI+ DQGE Sbjct: 122 ISVHEKDQEAYKLWQKFVPIS--HIKTMGDADNFWQMADVGPCGYCSEIYIDQGE----K 175 Query: 187 LPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 SSE EG+R++EIWNLVFMQ+E+ + L + IDTGMGLER+ +L+ Sbjct: 176 YFHSSEDYFGGEGDRFLEIWNLVFMQYERSSTGILTPLERPCIDTGMGLERVQALLEGVQ 235 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF+ LI E+V + Y +++ + RV+ DH RS FL+A G+ N GRGYVL Sbjct: 236 NNFDSSLFRPLISRIEEVFDLNYT-DHLESFRVLADHARSVGFLLAMGVYFENTGRGYVL 294 Query: 302 RRIMRRAMCYARLLGYT------EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 RRI+RRA+ + LL EP +L LC M YP L + K IE ++E+ Sbjct: 295 RRILRRALRHGYLLKQAQQKQLEEPFFYKILGYLCGLMPD-YPLLAEHKESIEAECKAEE 353 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E F TLD+G+ L + L +G VAFKLYDT+G PLD+ D+L + + +++ Sbjct: 354 ELFLATLDKGMHLFESALKECSGSS-FSGAVAFKLYDTYGFPLDLTMDMLRHKNIT-VNL 411 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + ++EQ+ R++ K+ + F DL S + Sbjct: 412 EEYQACMQEQQQRSQ-----------------FKQSHAKEGFKNLDL---SALV------ 445 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 P + + S+ I+ +EEA + +V D+TPFYA+ GG +GD G + Sbjct: 446 ----PNVFVGYECESVQAKIL--ALYLEEA---NRAFLVLDKTPFYAQGGGPIGDRGVIL 496 Query: 536 GDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 L Q+ D QK E +VE L S++ + + R +++ +HSATHLL Sbjct: 497 DTNHVLLAQVLDTQKVGEINISFVELVEGANLGVGDSVIAEVSH--RLEIAKHHSATHLL 554 Query: 594 HHALSTILGS---------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 H AL ILG + Q GS I P LRFD + + + E++ IE VN IA Sbjct: 555 HLALREILGKKAREENKKVEIQQKGSHIEPSRLRFDFSFYRNLEDTEIEQIEAFVNAKIA 614 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +P M A SGA L KY ++VRVV + G V + CGG HV ++ + Sbjct: 615 LAMPTSVENMQALQAKESGAIMLFEDKYLEQVRVVKIA---GSVEA---CGGVHVQNSAQ 668 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 I I+ SS+ AG+RRIEA+ G+ A + Q+ ++ Sbjct: 669 IGGFAIIKVSSVSAGVRRIEAVCGE-AYYDFIAQERRI 705 >gi|195397897|ref|XP_002057564.1| GJ18196 [Drosophila virilis] gi|194141218|gb|EDW57637.1| GJ18196 [Drosophila virilis] Length = 967 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 314/962 (32%), Positives = 483/962 (50%), Gaps = 94/962 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R T+L FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRDTYLNFFKEKQHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMAKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT +L Sbjct: 69 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWEFLTVRLNLP 128 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + + D E ++W + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDVASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + +++ +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NQDDPDVLEIWNLVFIQYNRESDGSLKPLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L A + TG Y+G + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDADGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVELLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDI 400 + I + + E+ +F KTL RG LL+ + LG ++ + GDVA++LYDT+G P+D+ Sbjct: 365 KDPQQIMDIINEEELQFLKTLTRGRNLLNRTIEKLGANQTTIPGDVAWRLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + + L ID+ ++ A + + S G G+ E+I + Q G Sbjct: 425 TQLMAEEKSLQ-IDMAGYDAA----KQNSYILSQGKGASKIEEINLDV-HAISQLQEQGV 478 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 S K + + + + S IV A+ + + V+E SGQK +V D+T F Sbjct: 479 PPTNDSFKYKYEAVSNERDSAYNYSECTSKIV-ALRYENKFVQEISSGQKAGIVLDKTNF 537 Query: 521 YAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE+GGQ+ D G + D + D G +H +VE G L + L ID + Sbjct: 538 YAESGGQIYDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLAVGDEVQLHIDAE 596 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E Sbjct: 597 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVAKTEQL 656 Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684 D++ +N+P+ + + A+A G ++ Y D VRV+S + E Sbjct: 657 TRDMVYKNMPIYAK--ESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDQLEAQPDAE 714 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 G S CGGTH+ ++G IM I SE +I GIRRI A+TG A L + + Sbjct: 715 AGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFQQE 774 Query: 745 LASFLKVSQGNVVGRVEEIW---------------------EEYRKL------QLIHAKR 777 ++ + + G+ +++ +E R L L +R Sbjct: 775 ISKLQATIEADKTGKDSKLYVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKTLDDKER 834 Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLVG 829 L+ V + + + N ++++ + ++K L + + ++ ++ M V Sbjct: 835 ALRAAVSVTVVERAKALCEANPQANVLVQQLEAYNNTKALDAALKQVRSQLPDAAAMFVS 894 Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + KK L V + +++ A + + + VL GG GGG+P AQ+ G N + D+ Sbjct: 895 VDADSKKIFCLCSVPKSAVEKGLKANEWVQHVSPVL-GGKGGGKPESAQASGSNFERVDE 953 Query: 888 AI 889 + Sbjct: 954 IV 955 >gi|322380891|ref|ZP_08054970.1| alanyl-tRNA synthetase [Helicobacter suis HS5] gi|321146695|gb|EFX41516.1| alanyl-tRNA synthetase [Helicobacter suis HS5] Length = 862 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 294/758 (38%), Positives = 419/758 (55%), Gaps = 77/758 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I+ FLE+F+ H L+PSSSL+P D +L+FTN+GMV FK+IF G+ KP T+ Q Sbjct: 3 IKKAFLEYFKNLNHLLVPSSSLVP-QDASLLFTNAGMVQFKDIFLGKAKPFCNKATSAQL 61 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF YFKE AI A++ + + + D + +Y Sbjct: 62 CMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAFEFVHRHLNFDSKDIY 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 I+V+++D+EA+KLW+K +S I + DNFW MA+ GPCG CSEI+ DQGE Sbjct: 122 ISVHEKDQEAYKLWQKFVPIS--HIKTMGDADNFWQMADVGPCGYCSEIYIDQGE----K 175 Query: 187 LPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 SSE EG+R++EIWNLVFMQ+E+ + L + IDTGMGLER+ +L+ Sbjct: 176 YFHSSEDYFGGEGDRFLEIWNLVFMQYERSSTGILTPLERPCIDTGMGLERVQALLEGVQ 235 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVL 301 NN+D LF+ LI E+V + Y +++ + RV+ DH RS FL+A G+ N GRGYVL Sbjct: 236 NNFDSSLFRPLISRIEEVFDLNYT-DHLESFRVLADHARSVGFLLAMGVYFENTGRGYVL 294 Query: 302 RRIMRRAMCYARLLGYT------EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 RRI+RRA+ + LL EP +L LC M YP L + K IE ++E+ Sbjct: 295 RRILRRALRHGYLLKQAQQKQLEEPFFYKILGYLCGLMPD-YPLLAEHKESIEAECKAEE 353 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 E F TLD+G+ L + L +G VAFKLYDT+G PLD+ D+L + + +++ Sbjct: 354 ELFLATLDKGMHLFESALKECSGSS-FSGAVAFKLYDTYGFPLDLTMDMLRHKNIT-VNL 411 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 + ++EQ+ R++ K+ + F DL S + Sbjct: 412 EEYQACMQEQQQRSQ-----------------FKQSHAKEGFKNLDL---SALV------ 445 Query: 476 LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAI 535 P + + S+ I+ +EEA + +V D+TPFYA+ GG +GD G + Sbjct: 446 ----PNVFVGYECESVQAKIL--ALYLEEA---NRAFLVLDKTPFYAQGGGPIGDRGVIL 496 Query: 536 GDGIRL--QITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 L Q+ D QK E +VE L S++ + + R +++ +HSATHLL Sbjct: 497 DTNHVLLAQVLDTQKVGEINISFVELVEGANLGVGDSVIAEVSH--RLEIAKHHSATHLL 554 Query: 594 HHALSTILGS---------HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 H AL ILG + Q GS I P LRFD + + + E++ IE VN IA Sbjct: 555 HLALREILGKKAREENKKVEIQQKGSHIEPSRLRFDFSFYRNLEDTEIEQIEAFVNAKIA 614 Query: 645 QNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGE 704 +P M A SGA L KY ++VRVV + G V + CGG HV ++ + Sbjct: 615 LAMPTSVENMQALQAKESGAIMLFEDKYLEQVRVVKIA---GSVEA---CGGVHVQNSAQ 668 Query: 705 IMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 I I+ SS+ AG+RRIEA+ G+ A + Q+ ++ Sbjct: 669 IGGFAIIKVSSVSAGVRRIEAVCGE-AYYDFIAQERRI 705 >gi|194759416|ref|XP_001961945.1| GF14684 [Drosophila ananassae] gi|190615642|gb|EDV31166.1| GF14684 [Drosophila ananassae] Length = 966 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 318/968 (32%), Positives = 480/968 (49%), Gaps = 95/968 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRDAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMAKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW LT+ L Sbjct: 69 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWQFLTERLGLP 128 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + + D E +LW + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDKASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+QF +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L +A + TG Y+G +++ + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGTDDVDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVNTVVDLLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQATIPGDVAWRLYDTYGFPVDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + + L ID+ + E + + S G G+ E+I + + +Q Sbjct: 425 QLMAEEKSLQ-IDM----EGYEAAKHNSYILSQGKGASKIEEINLDV---HAISQLQEQG 476 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNG-VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + + K + + + G +S + A+ + + V E SGQK +V D+T F Sbjct: 477 VAPTNDSFKYKYEAVSDERDSAYNYGECTSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536 Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE+GGQ+ D G + D + D G +H +VE G L+ L L ID + Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELQLHIDVE 595 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E+ Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKGAMTIEQVAKTENL 655 Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684 +++ N+P+ + + A+A G ++ Y D VRV+S + E Sbjct: 656 TKEMVYNNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDSE 713 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + + Sbjct: 714 AGEKTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQE 773 Query: 745 LASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHAKR 777 + + G+ V+EI E E R L L +R Sbjct: 774 IVKLKATIDADTSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKER 833 Query: 778 KLQLNVEDLS-------CHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVG 829 L+ V C K D + + + + ++K L + + ++ ++ + M Sbjct: 834 ALRAAVSTTVVEKAKELCEKNPDAIVLVEQLEAFNNTKALDAALKQVRSQLPNAAAMFFS 893 Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K D+ Sbjct: 894 VDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDE 952 Query: 888 AIAGVASF 895 + F Sbjct: 953 IVELATKF 960 >gi|291390471|ref|XP_002711725.1| PREDICTED: alanyl-tRNA synthetase [Oryctolagus cuniculus] Length = 945 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 291/790 (36%), Positives = 421/790 (53%), Gaps = 73/790 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SS IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSGTIPLDDPTLLFANAGMNQFKPIFLNTIDPTHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F + RLY+T D+ KI+ DNFW M +TGPCGPCSEI + Sbjct: 126 FGIPIERLYVTYLDD----------------TKILPGNMKDNFWEMGDTGPCGPCSEIHY 169 Query: 178 DQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDTGMGLER+ Sbjct: 170 DR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDTGMGLERLV 225 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSSSFL 285 +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH R+ + Sbjct: 226 SVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDVDGIDMAYRVLADHARTITVA 285 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A+PEL + Sbjct: 286 LADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDAFPELKKDP 345 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P+D+ I Sbjct: 346 DMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDCKTIPGDTAWLLYDTYGFPVDLTGLI 405 Query: 405 LCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 +GL +D+ F EE+R A+ S G G+G + I + Y + L Sbjct: 406 AEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEELRAKGLEA 457 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 K + + + + V++++ A+ ++ VEE +GQ+ VV D+T FYAE Sbjct: 458 TDDSPKYNYQADSSGSYV-FESTVATVL-ALRREKMFVEEVSTGQECGVVLDKTCFYAEQ 515 Query: 525 GGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 GGQ+ D G + D + + Q + G +V H G LR + L ID Sbjct: 516 GGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTVYGSLRVGDQVRLFIDEP 573 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K E+ Sbjct: 574 RRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEI 632 Query: 639 VNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE------YED-----G 686 N++IA PV T+ A A G A+ Y D VRVVS+ ED G Sbjct: 633 ANEMIAAAKPVYTQDCALAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLEDPSGPAG 692 Query: 687 GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLA 746 + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L K +SL Sbjct: 693 SLTSVEFCGGTHLRNSSHAGDFVIVTEEAIAKGIRRIVAVTGAEAQKAL----RKAESLK 748 Query: 747 SFLKVSQGNV 756 L V + V Sbjct: 749 KSLSVMEAKV 758 >gi|224083946|ref|XP_002307181.1| predicted protein [Populus trichocarpa] gi|222856630|gb|EEE94177.1| predicted protein [Populus trichocarpa] Length = 973 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 300/851 (35%), Positives = 438/851 (51%), Gaps = 73/851 (8%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R TF++FF++ H SS ++P NDPTL+F N+GM FK IF G P + +A Sbjct: 69 VRDTFIKFFEEKNHVDWKSSPVVPVNDPTLLFANAGMNQFKPIFLGTADPNTALSKLSRA 128 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI+ AW+LLTK + L Sbjct: 129 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYKL 187 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y T + DE EA +W + L +++ DNFW M +TGPCGPC Sbjct: 188 PADRIYATYFGGDEKAGLAPDNEARDIWLQF--LPPGRVLPFGCKDNFWEMGDTGPCGPC 245 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +EI +D+ + ++++ +EIWNLVF+QF +++ LP +DTGMG ER Sbjct: 246 TEIHYDRVGNRNAAMLVNNDD-PTCLEIWNLVFIQFNRESDGSLKSLPAKHVDTGMGFER 304 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSSS 283 + +VLQ K +NYD D+F + A +Q TG + + + +RV+ DH+R+ S Sbjct: 305 LTSVLQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDVDGVDMAYRVVADHIRTLS 364 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 F IADG P NEGR YVLRRI+RRA+ Y + +L E L+ + M +PEL + Sbjct: 365 FAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNVVVKVMSDVFPELKR 424 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDV-AFKLYDTHGLPLDIM 401 + I ET+ +E+ FGKTL +G+ + + ++L+G L LP+ Sbjct: 425 NEEHIRETIAAEEASFGKTLLKGIEKFKKAAQEV-EGKVLSGQARCVCLVGYIWLPIRFD 483 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 + RGL +D+ FN A++E R R+R G ++ AT + Sbjct: 484 SE---ERGLR-VDVEGFNNAMDEARERSRNAQNKQAGG-------AIVMDADATSALHK- 531 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 +G + K +C S++KAI E +E A + +V +V + T FY Sbjct: 532 --KGVSATDDSFKFIC-------FEDHESVIKAIYNGSEFLESAAAANEVGIVLESTSFY 582 Query: 522 AEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE--RGILRTEMSLVLTIDYQN 579 AE GGQ+ DTG G Q+ +VQ G VH + G + +DY Sbjct: 583 AEQGGQIFDTGVLEGPFGSFQVCNVQIFG-GFIVHIGSLTGVSGRFSVGEKVTCKVDYDR 641 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R+ ++ NH+ TH+L+ AL +LG+HV Q GS + P+ LRFD +H KP+ L+ IE V Sbjct: 642 RKLIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPELLRKIESIV 701 Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDGG 687 N I L V + +A +G A+ G Y D VRVVS+ E E+ Sbjct: 702 NGQIKDELGVFAKEATLAEAKQINGLRAVFGEVYPDPVRVVSIGRKVEDLLANPENEEWL 761 Query: 688 VHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-----RSHLMGQ--DE 740 S+ LCGGTH+++T E ++SE I GIRRI A+T A +H + Q DE Sbjct: 762 SISAELCGGTHITNTREAKAFALLSEEGIAKGIRRITAVTTDGAFKAMELAHSLEQEVDE 821 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHI 800 K+ S L+ ++ RV+ K I AK + N + KIA+ N + Sbjct: 822 ASKADGSLLEKKVASLKTRVDSALIPAAKKADIRAKISVLQNKVRKAQKKIAEENMQKAV 881 Query: 801 ISEVDSKELKS 811 + E+ S Sbjct: 882 EVAAEMAEVAS 892 >gi|326471957|gb|EGD95966.1| alanyl-tRNA synthetase [Trichophyton tonsurans CBS 112818] Length = 963 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 330/973 (33%), Positives = 500/973 (51%), Gaps = 116/973 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL++F+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 23 VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD Sbjct: 83 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ +E EA +W+ + G+ D I+ DNFW M + GPCGPCS Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ ++ + LP +DTG+G Sbjct: 202 EIHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGY 257 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ ++LQ K++NYD D+F L A + +TG + Y G + I +RV+ DHLR+ Sbjct: 258 ERLVSILQNKSSNYDTDVFSPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRT 317 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE Sbjct: 318 LTFAITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPE 377 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDEILNGDVAFKLYDTH 394 + + + + E L E+ F KTLDRG + S GK L+G ++LYDT Sbjct: 378 IKRKQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGK---LHGADVWRLYDTF 434 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----- 449 G P+D+ + + R L ID F EE R +A+ S G ++ + ++ Sbjct: 435 GFPVDLTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKTASDLLKLTVHTLSTL 489 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAV 506 EK G + +KF K + + +KAI E+++ + Sbjct: 490 EKNGVPK-----TNDDAKFRK---------------GNIVANIKAICHGKEVIDSTKDIP 529 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565 + +++ ++ D+T FYAE GGQ DTG + DG L + +VQ G +H ++ G Sbjct: 530 ANEQIGIILDKTNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYG-GYVLHTGFIKYGNF 588 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 S++ D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H Sbjct: 589 SVNDSVIAEYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKS 648 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684 I+ ++L+ IE D I QN V ++ + A +G A+ G Y D VRVVSV E Sbjct: 649 AISDSDLEKIEAKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVE 708 Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-- 731 + S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 709 LDEILKNVKDPRWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHE 768 Query: 732 -------------RSHLMG----QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYR 768 R M +D ++KSL L V + + +I ++ Sbjct: 769 VQRIAREFGERLNRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKIT 828 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIM 826 Q K +++ ++ +S + + + S +I + K++ ++L K SG + Sbjct: 829 DAQKAAQKAEVKTAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKAL 888 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 V + K + VT DL + +A + A + ++GG GG P +A G NK Sbjct: 889 YVFAADTSKVAHGCYVTPDLTTKGASANEWASAVSSIVGGKAGGKAP-VAIGNGTEVNKV 947 Query: 886 DQAIAGVASFLKK 898 D+A+ +L+K Sbjct: 948 DEALDEATKYLEK 960 >gi|195339200|ref|XP_002036208.1| GM12994 [Drosophila sechellia] gi|194130088|gb|EDW52131.1| GM12994 [Drosophila sechellia] Length = 966 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 316/968 (32%), Positives = 484/968 (50%), Gaps = 95/968 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +++FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRNAYMDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT+ L Sbjct: 69 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALP 128 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + + D E ++W + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L A + TG Y+G +++ + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + + L ID+ + A + + S G G+ E+I + + +Q Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + + K + + + GV SS + A+ + + V E SGQK +V D+T F Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCSSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536 Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE+GGQ+ D G + D + D G +H +VE G L+ L L ID + Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQL 655 Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684 +++ +N+P+ + + A+A G ++ Y D VRV+S + E Sbjct: 656 TKEMVYKNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDELEQNPDSE 713 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + + Sbjct: 714 AGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALQKSETFEQE 773 Query: 745 LASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHAKR 777 + + + G+ V+EI E E R L L +R Sbjct: 774 IVRLKATIENDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKER 833 Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLVG 829 L+ V + + + N + ++ E ++K L + + ++ ++ M + Sbjct: 834 ALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLS 893 Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K D+ Sbjct: 894 VDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDE 952 Query: 888 AIAGVASF 895 + + F Sbjct: 953 IVQLASKF 960 >gi|298708166|emb|CBJ30506.1| Alanyl-tRNA Synthetase [Ectocarpus siliculosus] Length = 992 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 287/803 (35%), Positives = 424/803 (52%), Gaps = 73/803 (9%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S +R +F+ FF +K+ H SS ++P +DPTL+F N+GM FK +F G P Sbjct: 33 ASRVRDSFISFFTEKHDHTFWKSSPVVPHDDPTLLFANAGMNQFKPLFLGTADPALPLSK 92 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+ LT Sbjct: 93 LTRATNSQKCIRAGGKHNDLDDVGKDLYHHTFFEMLGNWSFGSYFKEEAIGYAWECLTTV 152 Query: 118 FDLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD RLY T + DE DE+A K+W K L +++ + DNFW M + GPC Sbjct: 153 YKLDPSRLYATYFGGDEKLRVGADEDAKKIWLKY--LPESRVLPFSLADNFWEMGDVGPC 210 Query: 170 GPCSEIFFDQGECIPGGLPGSSE---EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPC EI +D+ GG + + + IEIWN+VF+Q+ ++N LP IDT Sbjct: 211 GPCVEIHYDR----IGGRDAAKDVNMDKPEVIEIWNVVFIQYNRENDGSLKELPNKHIDT 266 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG--------NNIVNHRVIVD 277 G+G ER+A++LQ K +NYD D+F + +A TG + Y G N + +RV+ D Sbjct: 267 GLGFERLASILQGKMSNYDTDVFVPIFEAIRSATGARPYTGKVGEEDSDNMDMAYRVVAD 326 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSA 336 H+R+ + I DG P+N+GRGYVLRR++RRA+ Y + + +P H L+P + M Sbjct: 327 HIRTLTIAITDGCTPSNDGRGYVLRRVLRRAIRYGQQVLGGKPGFFHTLVPVVVGLMKGI 386 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL+ A+ + ++ E+ F KTLD+GL + V + LG ++ G AF+LY + G Sbjct: 387 FPELVDAEARVTAVIKDEEMSFNKTLDKGLKEFNKVAAALGDSKVFPGTAAFQLYSSMGF 446 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRA-RAHSLGLGSGTTEKI-------WFSL 448 PLD++ + +GL+ +D+ F+Q + ++++++ +A S +G I W S Sbjct: 447 PLDLLTLMAEEKGLS-VDVEGFDQKMSDEKTKSNQARSNQKAAGGKPMILEAEQMDWLS- 504 Query: 449 KEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 K AT+ G R + + KVL + + G V V + Sbjct: 505 KRDTEATEASG----RYTWHQQPAAKVLA----LFVGKGEGEDGVGFVPSASAVADEADQ 556 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIF-VHHAIVERGILR 566 Q V VV D T FYAE GGQ+ D G ++ DG Q + G + +H V+ G L Sbjct: 557 QTVGVVLDCTSFYAEGGGQIYDIGELSLSDG-SGSFAVRQVSSFGAYTLHIGQVKAGTLS 615 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH---VSQNGSCITPDGLRFDVTH 623 +V +DY+ R ++ NH+ TH+L+ AL +L Q GS + + LRFD + Sbjct: 616 VGSDVVCKVDYERRANVAPNHTMTHVLNFALRKVLDPSDGMCDQKGSFLDDEKLRFDFSW 675 Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV- 681 S +T+ ++ +ED VND I +NLPV + E A + G +Y D VRV+S+ Sbjct: 676 SGSLTAEQVADVEDLVNDKINKNLPVYAFVAPLEQAQRIQSLRGVFGERYPDPVRVLSIG 735 Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E S CGGTH+S+T E I+ E+ I G+RRI A+T Sbjct: 736 QDVPAMLEDPENSAWSDVSVEFCGGTHLSNTQEAETFVILEEAGIAKGVRRIVAVT---- 791 Query: 732 RSHLMGQDEKLKSLASFLKVSQG 754 R + E+ K+ L V+ G Sbjct: 792 RGLALAAVERAKAFEQQLDVADG 814 >gi|195115683|ref|XP_002002386.1| GI12987 [Drosophila mojavensis] gi|193912961|gb|EDW11828.1| GI12987 [Drosophila mojavensis] Length = 967 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 315/974 (32%), Positives = 486/974 (49%), Gaps = 106/974 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +L FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRDAYLNFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGIADPNSEMSKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT +L Sbjct: 69 VNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTDRLNLP 128 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + + D E ++W + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDAANGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L A + TG Y+G + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDADGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L E +G A+PE+ Sbjct: 305 TIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVTTVVELLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDI 400 + I + + E+++F KTL RG LL+ + LG D+ + GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIMDIINEEEQQFLKTLSRGRNLLNRTIEKLGADQKTIPGDVAWRLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS------LKEKYGA 454 Q + + L ID+ ++ A + + S G G+ ++I L+EK Sbjct: 425 TQLMAEEKSLQ-IDMDGYDAA----KHNSYILSQGKGASKIDEINLDVHAISELQEKGVP 479 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 + + ++ + D ++ S IV A+ + + V+E SGQK +V Sbjct: 480 PTNDSFKYIYEAESNERDSAY-------KFSDCTSKIV-ALRYENKFVQEITSGQKAGIV 531 Query: 515 FDQTPFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 D+T FYAE+GGQ+ D G + D + D G +H +VE G L + Sbjct: 532 LDKTNFYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLAVGDEVQ 590 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 L ID + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ Sbjct: 591 LHIDVERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQV 650 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-------- 681 E D++ + +P+ + + A+A G ++ Y D VRV+S Sbjct: 651 AKTEQLTRDMVYKEMPIYAK--ESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDQLE 708 Query: 682 ---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 + E G S CGGTH+ ++G IM I SE +I GIRRI A+TG A L Sbjct: 709 SQPDSEAGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKS 768 Query: 739 DEKLKSLASFLKVSQGNVVGR--------VEEIWEEYRKLQLIHAKR----------KLQ 780 + K +++ + + G+ + E+ E+ + + K+ K Sbjct: 769 EGFEKEISTLKATIEADKTGKDSKLYVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKT 828 Query: 781 LNVEDLSCHKIADVNFMSH-------------IISEVDSKELKSVMDALQKKIQSGI--- 824 L+ ++ + V + ++ ++++ +DA K+++S + Sbjct: 829 LDDKERALRAAVSVTVVEQAKALCEANPKANVLVQQLEAYNNTKALDAALKQVRSQLPDA 888 Query: 825 -IMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPN 881 M V + + KK L V + +++ A + + + VL GG GGG+P AQ+ G N Sbjct: 889 AAMFVSVDADSKKVFCLCSVPKSAVEKGLKANEWVQHVSPVL-GGKGGGKPESAQASGSN 947 Query: 882 GNKADQAIAGVASF 895 + D+ + + F Sbjct: 948 FERVDEIVQLASKF 961 >gi|157115817|ref|XP_001658296.1| alanyl-tRNA synthetase [Aedes aegypti] gi|108883466|gb|EAT47691.1| alanyl-tRNA synthetase [Aedes aegypti] Length = 966 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 315/979 (32%), Positives = 498/979 (50%), Gaps = 118/979 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 IR FL+FF++ H + SSS IP +DPTL+F N+GM FK IF G P + Sbjct: 10 IRNAFLDFFKEKEHLYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSDMAKWVRT 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+LLT L Sbjct: 70 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDRLKLP 129 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + + D E ++W K+ G+ + I+ + DNFW M ETGPCGPCS Sbjct: 130 KDRLYVTYFGGHPESGLEPDLECREIWIKL-GVKEEHILPGSMKDNFWEMGETGPCGPCS 188 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+QF ++ +LPK ID GMG E Sbjct: 189 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNREQDGSLKLLPKKHIDCGMGFE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q+K +NYD D+F L +A ++ TG Y+G +++ + +RV+ DH R+ Sbjct: 246 RLVSVIQDKRSNYDTDVFVPLFEAIQKGTGAPSYQGRVGADDVDGVDMAYRVLADHARTI 305 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G +PE+ Sbjct: 306 TIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVDTVVFLLGDTFPEVK 365 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I+ + E+++F KTL RG LL+ ++ LG +++ GDVA++LYDT+G P+D+ Sbjct: 366 KDPQNIKNIINEEEQQFLKTLTRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPIDLT 425 Query: 402 QDILCARGLAGIDIISFNQA------LEEQRSRARAHSLGLG----SGTTEKIWFSLKEK 451 Q ++ ID+ + +A L + + +++A ++ L S EK + + Sbjct: 426 Q-LMAEEKNMTIDMEGYEKAKHESYILSQGKEKSKAATVDLDVHAISELQEKKVPTTDDS 484 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 + D + KF + KVL A+ V+E +GQ+ Sbjct: 485 FKYRYKADVDPMAEYKFEPCNGKVL-----------------ALRANNIFVDEVQAGQEC 527 Query: 512 EVVFDQTPFYAEAGGQLGDTG--CAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 V+ D+T FYAE+GGQ+ D G +GD + V + G +H +VE GILR Sbjct: 528 AVILDKTNFYAESGGQIYDQGYLVKVGDESTEFNVNLVYNRG-GYIIHIGVVE-GILRVG 585 Query: 569 MSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + +D RRQL++ NHSATH L+H+L +LG Q GS + P+ LRFD T+ + Sbjct: 586 DEVACHMDTL-RRQLTMKNHSATHALNHSLLKVLGLDTDQRGSLVVPEKLRFDFTNKSAM 644 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681 T ++ E +++ +N+ + + A + G ++ Y D VRV+S Sbjct: 645 TVEQVAESERLTREVVKKNMQIYAKESKLSVAKSIKGLRSVFDEVYPDPVRVISFGVPVE 704 Query: 682 ------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 E E+G S CGGTH+ +G + I +E +I GIRRI A+TG A L Sbjct: 705 NLEANPEGEEGVETSVEFCGGTHLHQSGHMWDFVITTEEAIAKGIRRIVALTGPEALKAL 764 Query: 736 MGQ---DEKLKSLASFLKVSQ-----GNVVGRVEEIWEEYRKLQLIHAKRKLQLNV---- 783 + +L +L S ++ + +V ++ E+ E+ + + + K+ NV Sbjct: 765 KKTELLENELNALKSTIEADKTGKDSKELVKKIVELNEDVSQAVIPYVKKDEIRNVLKSL 824 Query: 784 -----------------------EDLSCHKIADVNFMSHIISEV-DSKELKSVMDALQK- 818 ++LS D F+ H + ++K L S + ++K Sbjct: 825 KKTLDDKERAARAAVSTTVVEKAKELS-ESNKDAPFLVHRMEAYNNTKALDSALKEVRKI 883 Query: 819 KIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD--LARLSAKVLGGGGGGGRPHMAQ 876 + + + KK L V + +++ + ++ +S + GG GGG+P AQ Sbjct: 884 NPEQSALFVSSDPDTKKIFCLASVPKSAVEKGLKANEWISHISPSM--GGKGGGKPESAQ 941 Query: 877 SGGPNGNKADQAIAGVASF 895 + G N +K ++ + F Sbjct: 942 ASGANFDKVEEILELARQF 960 >gi|322783659|gb|EFZ10997.1| hypothetical protein SINV_01057 [Solenopsis invicta] Length = 952 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 288/780 (36%), Positives = 421/780 (53%), Gaps = 66/780 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 N IR +++FF+ GHE + SSS IP +DP+L+FTN+GM FK IF G P Sbjct: 6 NAKQIRQAYIDFFKSKGHEYVHSSSTIPHDDPSLLFTNAGMNQFKPIFLGTVDPNSDMAK 65 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + V QKC+RAGGKHNDLD+VG+ HHTFFEM+GN+SFG YFK+ AW+ LT Sbjct: 66 WVRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWEFLTDV 125 Query: 118 FDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 L RLY+T + D+E LW + G+ A ++ DNFW M ETGPC Sbjct: 126 LKLPADRLYVTYFGGDMKSGLAPDDECKDLWLSL-GIPASHVLPGNMKDNFWEMGETGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSE+ +D+ GG + + + +EIWNLVF+Q+ ++ LPK ID Sbjct: 185 GPCSELHYDR----IGGREAAHLVNMDDPDVLEIWNLVFIQYNREPDGSLKPLPKKHIDC 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVD 277 G+GLER+ +V+Q+K NYD DLF L A E+ TG Y+G +++ + +RV+ D Sbjct: 241 GLGLERLISVIQDKRANYDTDLFMPLFDAIEKGTGAPPYKGKIGADDVDGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSA 336 H R+ + +ADG +P N GRGYVLRRI+RRA+ YA +P L + E +G Sbjct: 301 HARTITIALADGGMPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGSLVNVVVELLGDV 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PE+ + I E + E+ +F KTL RG LL+ ++ L ++ GDVA++LYDT+G Sbjct: 361 FPEVKRDPQSIIEIINEEEIQFLKTLSRGRNLLNRTIAKLESTNVVPGDVAWRLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q + +GL ID+ + EE + +A+ S G ++I + + T+ Sbjct: 421 PIDLTQLMTEEKGLK-IDMTGY----EEAKKQAQLISQNKAGGVDDQINLDV---HAITE 472 Query: 457 FIGYDLLRGSKFMKEDRKV--LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 + K D KV Q D +++ A+ + V+E SG++V ++ Sbjct: 473 LQNQGVKPTDDSPKYDYKVTNTVQYNEYDFAPCTGTVI-ALRRAKAFVDEVSSGEEVGIL 531 Query: 515 FDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 D+T FYAE GGQ+ D G + + +++ +VQ +A G +H V G LR + Sbjct: 532 LDRTNFYAEQGGQIFDEGFLVKVDDEATEIRVKNVQVRA-GYVLHIGTVGEGKLRKGDKV 590 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 +D + RR + NHSATH L++AL +LG+ Q GS + PD LRFD T+ P+T+ + Sbjct: 591 HTNVDTKRRRFVMANHSATHALNYALRKVLGTEADQKGSLVAPDRLRFDFTNKGPMTTKQ 650 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSV----- 681 L E ++I N +I +E ++A G A+ Y D VRVVS+ Sbjct: 651 LLDTEVATQEMIKDN----KQIYTKESSLAIAKTIQGLRAMFEETYPDPVRVVSMGVSVE 706 Query: 682 EYEDGGVHSSAL------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 + E + +AL CGGTH+ T I I SE +I GIRRI A+TG A L Sbjct: 707 KLESDPLSKAALETSVEFCGGTHLHYTAHIGDFVIASEDAIAKGIRRIVALTGPEATKAL 766 >gi|83319899|ref|YP_424149.1| alanyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535930|sp|Q2SSW4|SYA_MYCCT RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|83283785|gb|ABC01717.1| alanyl-tRNA synthetase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 896 Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust. Identities = 293/932 (31%), Positives = 486/932 (52%), Gaps = 106/932 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L+FF H L SLIP +DP+L++ NSG+ K F G++ P +T Sbjct: 6 TNQIRKIWLDFFISKNHYFLEPVSLIPVDDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI+LAW+LLT + FD+D Sbjct: 66 SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAIELAWELLTDKNYFDID 121 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 + +LYITV++ED EA+ +WK + + D I R++ NFW + + GPCGP +EIF+D+GE Sbjct: 122 KNKLYITVFNEDIEAYNIWKDVIKIDEDHIFRLSKKTNFWDVGQ-GPCGPNTEIFYDRGE 180 Query: 182 C-----IPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 I L E +RYIE+WN+VF QF LP+ +IDTG GLER A++ Sbjct: 181 IWDPNKIGPRLISDDIENDRYIEVWNIVFSQFNNDGNNNYVELPRKNIDTGAGLERFASI 240 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTG--MKYEGNNIVN-----------HRVIVDHLRSSS 283 Q N++ D+F I+ EQ+T KY +N N +VI DH+R++ Sbjct: 241 FQNTPTNFETDIFYPTIKKVEQLTNNQFKYSIDNYFNPNKKQTRINTAFKVIADHIRATV 300 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 F I+DG+ P N+ RGY++RR++RR+ + LG + + L+ ++ M YP L+ Sbjct: 301 FAISDGVFPGNKDRGYIIRRLIRRSCVFGNELGIKQAFLYKLVDSVIESMKEFYPYLVDK 360 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 K L+E+T++ E+E+F KTL +G LL+ ++ K+ + + D A L++++G P++ + Sbjct: 361 KSLVEQTIKDEEEKFLKTLSKGYDLLENIIK--TKNTVSDKD-ALLLFESYGFPIEQTIE 417 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS-LKEKYGATQFIGYDL 462 I + +DI F + LE+ + R L + + F+ LK + ++F G+ Sbjct: 418 ISELSNVT-VDIEGFKKLLEQTKQATRNARKDLKAWDKQNELFTKLKVE---SEFTGW-- 471 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 S+ +++ KV+ Q ++ E+++ Q+V V+ D+TPFYA Sbjct: 472 ---SEISRDNAKVIY----------------MFTDQKQV--ESITDQEVFVILDKTPFYA 510 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 E GGQ D+G D ++ + DVQ+ +H V+ + ++ + +D + R Sbjct: 511 EKGGQAADSGIIFNDQMKGFVIDVQQGPMHQNIHRIKVQDTLKLNDL-INCRVDEEKRIY 569 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 NHS TH++H+AL +LGS V Q+GS +GLR D T+ + T+ EL ++ V + Sbjct: 570 TMKNHSGTHMIHYALREVLGSSVMQSGSYNDENGLRMDFTYHRLPTNQELLKAQNLVLEK 629 Query: 643 IAQNLPVVTRIMNREDAIASGAA-ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I + T + E+++ A A KY++ VRV+ G SS LCGGTHV++ Sbjct: 630 IKNKVDRQTYFCSLEESVKKHQALAFFTEKYDEIVRVIKF-----GDFSSELCGGTHVNN 684 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD------------EKLKSLASFL 749 T EI I S +G+ RI+ +T + + + + +K L Sbjct: 685 TSEIEDFIITGIESKGSGLYRIKCLTSFKTVNEYLNEQFKIYKDQAEIIIDKYNQNKDLL 744 Query: 750 KVSQ---------------------GNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDL 786 K Q +++ ++ ++ ++Y K LI A + L+ Sbjct: 745 KNDQLENIYLEIKNITINKDNLILIKDLLDKLRDLNKDYDKKVNDLITANKLLKYKDLTP 804 Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846 S +K +VN + ++++ ++LK + D L+ K I++L+ + E +++ V++ L Sbjct: 805 SLNK-DNVNEIKLETTDLNIRDLKQLADDLRNKYNDLIVILLSSTNENNF-IVVAVSQSL 862 Query: 847 LDRFNAVDLARLSAKVLGG--GGGGGRPHMAQ 876 +++ A+D+ L G GGG ++AQ Sbjct: 863 QNKYKAIDIFN----NLEGYETKGGGNANLAQ 890 >gi|326477176|gb|EGE01186.1| alanyl-tRNA synthetase [Trichophyton equinum CBS 127.97] Length = 963 Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust. Identities = 330/973 (33%), Positives = 500/973 (51%), Gaps = 116/973 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL++F+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 23 VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD Sbjct: 83 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ +E EA +W+ + G+ D I+ DNFW M + GPCGPCS Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ ++ + LP +DTG+G Sbjct: 202 EIHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGY 257 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ ++LQ K++NYD D+F L A + +TG + Y G + I +RV+ DHLR+ Sbjct: 258 ERLVSILQNKSSNYDTDVFSPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRT 317 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE Sbjct: 318 LTFAITDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPE 377 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDEILNGDVAFKLYDTH 394 + + + + E L E+ F KTLDRG + S GK L+G ++LYDT Sbjct: 378 IKRKQTDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGK---LHGADVWRLYDTF 434 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----- 449 G P+D+ + + R L ID F EE R +A+ S G ++ + ++ Sbjct: 435 GFPVDLTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKTASDLLKLTVHTLSTL 489 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAV 506 EK G + +KF K + + +KAI E+++ + Sbjct: 490 EKNGVPK-----TNDDAKFGK---------------GNIVANIKAICHGKEVIDSTKDIP 529 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565 + +++ ++ D+T FYAE GGQ DTG + DG L + +VQ G +H ++ G Sbjct: 530 ANEQIGIILDKTNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYG-GYVLHTGFIKYGNF 588 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 S++ D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H Sbjct: 589 SVNDSVIAEYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKS 648 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684 I+ ++L+ IE D I QN V ++ + A +G A+ G Y D VRVVSV E Sbjct: 649 AISDSDLEKIEAKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVE 708 Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-- 731 + S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 709 LDEILKNVKDPRWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHE 768 Query: 732 -------------RSHLMG----QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYR 768 R M +D ++KSL L V + + +I ++ Sbjct: 769 VQRIAREFGERLNRFEKMSAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKIT 828 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIM 826 Q K +++ ++ +S + + + S +I + K++ ++L K SG + Sbjct: 829 DAQKAAQKAEVKTAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKAL 888 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 V + K + VT DL + +A + A + ++GG GG P +A G NK Sbjct: 889 YVFAADTSKVAHGCYVTPDLTTKGASANEWASAVSSIVGGKAGGKAP-VAIGNGTEVNKV 947 Query: 886 DQAIAGVASFLKK 898 D+A+ +L+K Sbjct: 948 DEALDEATKYLEK 960 >gi|321477760|gb|EFX88718.1| hypothetical protein DAPPUDRAFT_191289 [Daphnia pulex] Length = 987 Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust. Identities = 293/781 (37%), Positives = 426/781 (54%), Gaps = 60/781 (7%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 + + IR +++FF +K H + SSS IP +DPTL+F N+GM FK +F G P Sbjct: 6 SAAKIRQMYMDFFIEKKSHIYVHSSSTIPKDDPTLLFANAGMNQFKPLFLGTVDPNSDMS 65 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+LLT Sbjct: 66 KWIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCTWAWELLTD 125 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 F L + RLY+T + DEE ++W + GL A++I+ + DNFW M + GP Sbjct: 126 VFQLPKDRLYVTYFGGNENAGLQPDEECRQIWLSL-GLPAERILPGSMKDNFWEMGDVGP 184 Query: 169 CGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 CGPCSEI FD+ GG + + + +EIWNLVFM F ++ LP+ ID Sbjct: 185 CGPCSEIHFDR----IGGRDAAHLVNMDDPDVLEIWNLVFMTFNRETDSSLKPLPRKHID 240 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN------NIVN--HRVIV 276 GMG ER+ +V+Q+K +NYD D+F+ + +A ++ T Y+G N V+ +RV+ Sbjct: 241 CGMGFERLVSVIQDKRSNYDTDIFQPIFEAIQKGTNAPAYQGKVGAEDVNGVDMAYRVLA 300 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGS 335 DH R+ + ++DG P N GRGYVLRR++RR + YA +P L+P +C +G Sbjct: 301 DHARTLTIALSDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAKPGFFASLVPTVCQVLGP 360 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 +PE+ + L+ + + E+ +F KTL RG LL+ +S L L GDVA++LYDT+G Sbjct: 361 TFPEVNRDPQLVIDIINDEETQFLKTLTRGRDLLERTISKLNGQTTLPGDVAWRLYDTYG 420 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ Q + +GL+ ID++++ EE + +A+ S G GSG + I F + + T Sbjct: 421 FPVDLTQLMSEEKGLS-IDMVAY----EEAKKQAQLLSQGKGSGVDDTIAFDV---HAIT 472 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQ--KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 + + K + K + P + S ++ AI Q EE SG + + Sbjct: 473 ELQNKGVPPTDDSFKYNYKSVSDAVDSPYEFDVCTSKVI-AIRFQKAFHEEVSSGVECGI 531 Query: 514 VFDQTPFYAEAGGQLGDTG--CAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 + D+T FYAE+GGQ D G IGD G + +VQ + G +H VE G LR Sbjct: 532 LLDRTSFYAESGGQAYDEGFITKIGDEGTEFTVKNVQVRG-GYVIHLGNVE-GTLRVGDE 589 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 + L+ID RR + NH+ TH+L++AL ++G+ Q GS + PD +RFD T+ +T Sbjct: 590 VKLSIDQSRRRLIMSNHTGTHVLNYALRQVVGNEADQRGSLVAPDRMRFDFTNKAAMTVD 649 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-------- 681 ++K E N++I +N V + + A A G A+ Y D VRVVS+ Sbjct: 650 QVKQTERIANEMIRKNQEVYAKESSLVVAKAVQGLRAVFEETYPDPVRVVSIGIPVEQLE 709 Query: 682 ---EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 G S CGGTHV +G I I +E +I GIRRI AITG A L Sbjct: 710 ADPANPAGNSTSIEFCGGTHVKRSGHIGDFVISAEEAIAKGIRRIVAITGPEASKALKKA 769 Query: 739 D 739 D Sbjct: 770 D 770 >gi|296806327|ref|XP_002843973.1| alanyl-tRNA synthetase [Arthroderma otae CBS 113480] gi|238845275|gb|EEQ34937.1| alanyl-tRNA synthetase [Arthroderma otae CBS 113480] Length = 963 Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust. Identities = 330/973 (33%), Positives = 501/973 (51%), Gaps = 116/973 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL++F+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 23 VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTIDPNSDFAQLKRA 82 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD Sbjct: 83 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ +E EA +W+ + G+ D I+ DNFW M + GPCGPCS Sbjct: 143 PERLYVTYFEGNEGAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ ++ + LP IDTG+G Sbjct: 202 EIHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNKHIDTGLGY 257 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNHRVIVDHLRS 281 ER+ ++LQ+K++NYD D+F L A + +TG +Y G + I +RV+ DHLR+ Sbjct: 258 ERLVSILQDKSSNYDTDVFTPLFTAIQNITGARRYTGKFGAEDTDGIDTAYRVVADHLRT 317 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE Sbjct: 318 LTFAITDGAAPNNEGRGYVVRRVLRRGVRYARKYLKVEIGSFFSKLVPALVEQMGDMFPE 377 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRG-----LVLLDGVLSHLGKDEILNGDVAFKLYDTH 394 + + + + E L E+ F KTLDRG + + GK L+G ++LYDT Sbjct: 378 IKRKQNDVMEILDEEEVSFAKTLDRGERQFEYYAQQALEAGAGK---LHGADVWRLYDTF 434 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----- 449 G P+D+ + + R L ID F EE R +A+ S G ++ + ++ Sbjct: 435 GFPVDLTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKTASDLLKLTVHTLSTL 489 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAV 506 EK G + +KF K + + +KAI E+++ + Sbjct: 490 EKNGVPK-----TNDDAKFGK---------------GNIVANIKAICHGKEVIDSTKDIP 529 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565 + +++ ++ D+T FYAE GGQ DTG I DG L + +VQ G +H ++ G Sbjct: 530 ANEQIGIILDKTNFYAEQGGQEYDTGKIIIDGQAELDVQNVQMYG-GYVLHTGFIKYGNF 588 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 S++ D R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H Sbjct: 589 SVNDSVIAEYDELRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKS 648 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684 ++ ++L+ IE D I QN V ++ + A +G A+ G Y D VRVVSV E Sbjct: 649 AVSDSDLEKIEAKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVE 708 Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-- 731 + S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 709 LDEILKNVKDPRWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHE 768 Query: 732 -------------RSHLMG----QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYR 768 R M +D ++KSL L V + + +I ++ Sbjct: 769 VQRVAREFGERLNRFEKMAAGPERDAEVKSLQVDLNQLTISAVEKAKYRNQFTQIHKKIT 828 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIM 826 Q K +++ ++ +S + + + S +I S K++ ++L K SG + Sbjct: 829 DAQKAAQKAEVKTAIDAISSYFEQNKDSQSLVIKLPISANQKAISESLAHVKSKLSGKAL 888 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 V + K + VT DL + +A + A + ++GG GG P +A G NK Sbjct: 889 YVFAADTSKVAHGCYVTPDLTAKGASANEWASAVSGIVGGKAGGKAP-VAIGNGTEVNKV 947 Query: 886 DQAIAGVASFLKK 898 D+A+ +L+K Sbjct: 948 DEALDEATKYLEK 960 >gi|24582809|ref|NP_523511.2| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster] gi|45552267|ref|NP_995656.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster] gi|75027177|sp|Q9VLM8|SYAC_DROME RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|7297398|gb|AAF52657.1| Alanyl-tRNA synthetase, isoform A [Drosophila melanogaster] gi|45445248|gb|AAS64737.1| Alanyl-tRNA synthetase, isoform B [Drosophila melanogaster] Length = 966 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 317/970 (32%), Positives = 482/970 (49%), Gaps = 99/970 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT+ L Sbjct: 69 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALP 128 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + + D E ++W + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L A + TG Y+G +++ + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + + L ID+ + A + + S G G+ E+I + + +Q Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + + K + + + GV +S + A+ + + V E SGQK +V D+T F Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536 Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE+GGQ+ D G + D + D G +H +VE G L+ L L ID + Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQL 655 Query: 639 VNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSV-----------E 682 +++ +N+P I +E +A G ++ Y D VRV+S + Sbjct: 656 TKEMVYKNVP----IYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771 Query: 743 KSLASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHA 775 + + + G+ V+EI E E R L L Sbjct: 772 QEIVRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDK 831 Query: 776 KRKLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIML 827 +R L+ V + + + N + ++ E ++K L + + ++ ++ M Sbjct: 832 ERALRAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMF 891 Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K Sbjct: 892 LSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKV 950 Query: 886 DQAIAGVASF 895 D+ + + F Sbjct: 951 DEIVQLASKF 960 >gi|312379940|gb|EFR26076.1| hypothetical protein AND_08072 [Anopheles darlingi] Length = 975 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 318/977 (32%), Positives = 493/977 (50%), Gaps = 103/977 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 S IR FL+FF + H + SSS+IP +DPTL+F N+GM FK IF G P + Sbjct: 12 TASQIRKIFLDFFAEKKHLYVHSSSVIPLDDPTLLFANAGMNQFKPIFLGTVDPSSEMAR 71 Query: 63 TV-----QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AW+LLT+ Sbjct: 72 WVRTANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKREICTWAWELLTER 131 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 L + RLY+T + + D E +W ++ G+ ++ + DNFW M ETGPC Sbjct: 132 LRLPKDRLYVTYFGGHPESGLEPDLECRSIWIEL-GIPEAHVLPGSMKDNFWEMGETGPC 190 Query: 170 GPCSEIFFDQ---GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSE+ FD+ G +P + +++ +EIWNLVF+Q+ ++ +LPK ID Sbjct: 191 GPCSELHFDRIGGGRSVPELV---NQDDPDVLEIWNLVFIQYNREQDGSLKLLPKKHIDC 247 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMG ER+ +V+Q+K +NYD D+F L A TG G + + +RV+ D Sbjct: 248 GMGFERLVSVIQDKRSNYDTDVFVPLFDAIRAGTGAPPYGGRVGAEDTDGVDMAYRVLAD 307 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSA 336 H R+ + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G Sbjct: 308 HARTITIALADGGFPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVDTVVELLGDT 367 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PE+ + I+ + E+++F KTL RG LL+ ++ LG +++ GDVA++LYDT+G Sbjct: 368 FPEVRKDPQHIKNVIGEEEQQFLKTLTRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGF 427 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----EKY 452 P+D+ Q ++ ID+ + +R++ ++ + G ++ L + Sbjct: 428 PVDLTQ-LMAEEKEMSIDMEGY------ERAKHESYLISQGKEKSKTATIDLDVHAISEL 480 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 A Q D ++ E Q + G + A+ G VEE +GQ+ Sbjct: 481 QAKQLAPTDDSTKYRYRAESTDPQAQY----VFEGCRGRIVALRFGGAFVEEVTAGQECG 536 Query: 513 VVFDQTPFYAEAGGQLGDTG--CAIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 V+ D+T FYAE+GGQ+ D G +GD ++ V + G +H +VE G LR Sbjct: 537 VILDKTNFYAESGGQIYDQGYLVKVGDESSEFNVSLVYNRG-GYVLHIGVVE-GTLRVGD 594 Query: 570 SLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + +D RRQL++ NHSATH L+H+L +LG Q GS + P+ LRFD T+ +T Sbjct: 595 EVDCHLD-TVRRQLTMKNHSATHALNHSLLKVLGQDTDQRGSLVVPEKLRFDFTNKAAMT 653 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------ 681 ++ E +++ +N+ V + N A + G ++ Y D VRV+S Sbjct: 654 IEQVGEAERLTREVVRKNVQVFAKETNLAVAKSIRGLRSVFDEVYPDPVRVISFGVPVEQ 713 Query: 682 ----EYEDGGV-HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLM 736 D GV +S CGGTH+ +G ++ I SE +I GIRRI A+TG A L Sbjct: 714 LAADPTSDAGVLNSVEFCGGTHLHQSGHMVDFVITSEEAIAKGIRRIVALTGPEALKALQ 773 Query: 737 GQ---DEKLKSLASFLKVSQGNVVG------RVEEIWEEYRKLQLIHAK--------RKL 779 +++++ L ++ S G R+ E+ E+ + + + K + L Sbjct: 774 KTESLEQEVRQLREKIEASGTVTTGAKEFVRRIVELTEDVSQAVIPYVKKDELRTVLKNL 833 Query: 780 QLNVEDLSCHKIADVN----FMSHIISEV--DSKELKSVMDALQ--KKIQSGIIMLVGIS 831 + ++D A V+ + +SE D+ L ++A K + S + + I+ Sbjct: 834 KKTLDDRERAAKAAVSVEVIVRAKELSEANRDAPVLVHRLEAFSNTKALDSALKEVRKIN 893 Query: 832 KEKKASVLIVVTEDLLDRFNAVDLARLSAK-------------VLGGGGGGGRPHMAQSG 878 E+ A + + V ED F + + + + L GG GGG+P AQ+ Sbjct: 894 PEQSA-LFVSVDEDAGKIFCLASVPKGAVEKGLKANEWISHVAPLMGGKGGGKPESAQAS 952 Query: 879 GPNGNKADQAIAGVASF 895 G + KAD+ + SF Sbjct: 953 GGSWQKADEILELARSF 969 >gi|167518337|ref|XP_001743509.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778608|gb|EDQ92223.1| predicted protein [Monosiga brevicollis MX1] Length = 1000 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 295/791 (37%), Positives = 426/791 (53%), Gaps = 98/791 (12%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 N + +R T+++FF +K H PSSS +P +DPTL+F N+GM FK +F G P Sbjct: 8 NAAKVRQTYIDFFVEKKEHVFWPSSSSVPHDDPTLLFCNAGMNQFKKVFQGTVDPNSDMA 67 Query: 57 -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 V + V + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AIQ +++LLT Sbjct: 68 KVSRTVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKAEAIQWSFELLT 126 Query: 116 KEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + L RLY T ++ ED EA +LW K+ L AD ++ DNFW M TG Sbjct: 127 EVYGLSADRLYATYFEGDTEQNIPEDVEAKELWLKL--LPADHVLPGNKKDNFWEMGATG 184 Query: 168 PCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 PCGPCSE+ +D+ GG +S ++ +EIWNLVFMQF ++ +LP I Sbjct: 185 PCGPCSELHYDR----IGGRNAASLVNQDDPDVLEIWNLVFMQFNREPDASLRLLPARHI 240 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--------VNHRVIV 276 DTGMGLER+ +VLQ+K +NYD D+F+ +QV G + + +RV+ Sbjct: 241 DTGMGLERLVSVLQDKRSNYDTDVFQPYFDVIQQVCGCRPYAGKVGKEDDGIDTAYRVLA 300 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGS 335 DH+R+ + I+DG P N GRGYVLR I+RRA+ +A L E L+P + ++G Sbjct: 301 DHIRTLTISISDGGEPDNTGRGYVLRLIIRRAVRFAEDYLKAPEYFFSSLVPTVVEQLGD 360 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PE+ + + E L++E+++F +TL+RG L + D +++G VA++L+ T+G Sbjct: 361 AFPEIKRDPEHVIEVLKAEEKQFRRTLNRGRRLFQRA-ADKATDGVIDGHVAWQLWGTYG 419 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEE-----QRSRARA--------HSL----GLGS 438 P+D+ + + RGL +D +F A EE Q + A H L G Sbjct: 420 FPVDLTKVMAEERGLT-VDEKTFEAAREEAVKVSQMGKKMAIEGIDLDVHDLDKLKADGI 478 Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498 T+ S K YG Y+ F + KV+ + + + ++ Sbjct: 479 AATDD---SFKYDYGLVGDNSYE------FKDLEAKVVALRTESGFVDSLDGSDDSV--- 526 Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFV 555 V VV D+T FYAE GGQ DTG A G+ + + DVQKK + Sbjct: 527 -----------NVGVVLDRTNFYAEQGGQTYDTGFFRDANGE-LDFTVMDVQKKGP-YCL 573 Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615 H ++ G L+ +L L+ D + RR NH+ATH+L+ AL +LG Q GS + P+ Sbjct: 574 HIGVLSNGTLKVGDTLTLSFDVERRRPCMSNHTATHVLNFALRKVLG-EADQKGSLVEPE 632 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKY 672 LRFD T K +T +++ E VN+++ PV M+ A A +G A+ G Y Sbjct: 633 RLRFDFTAKKGMTIEQIQQTEKLVNEVVNAKKPV--DAMDAPLASAREINGLRAMFGETY 690 Query: 673 NDRVRVVSV-----EYEDGGVHSSAL------CGGTHVSSTGEIMLLYIVSESSIRAGIR 721 D VRVVSV + D V AL CGGTHV ++G+I+ I++E +I GIR Sbjct: 691 PDPVRVVSVGAIVKDVLDDPVSEVALANSIEFCGGTHVKNSGDIVQFAILNEEAISKGIR 750 Query: 722 RIEAITGQRAR 732 RI A+TG AR Sbjct: 751 RIVAVTGSEAR 761 >gi|195473021|ref|XP_002088795.1| GE11031 [Drosophila yakuba] gi|194174896|gb|EDW88507.1| GE11031 [Drosophila yakuba] Length = 966 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 320/969 (33%), Positives = 485/969 (50%), Gaps = 97/969 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT+ L Sbjct: 69 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLSLP 128 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + DE E ++W + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDEASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L A + TG Y+G +++ + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + + L ID+ + A + + S G G+ E+I + + +Q Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + + K + + + GV +S + A+ + + V E SGQK +V D+T F Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536 Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE+GGQ+ D G + D + D G +H +VE G L+ L L ID + Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKGAMTIEQVSKTEQL 655 Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684 +++ +N+P+ + + A+A G ++ Y D VRV+S + E Sbjct: 656 TKEMVYKNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRVISFGVSVDELEQNPDSE 713 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE---- 740 G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + Sbjct: 714 AGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQE 773 Query: 741 --KLKSLASFLKVSQGNVVGRVEEIWE----------------EYRKL------QLIHAK 776 +LK+ K S + V+EI E E R L L + Sbjct: 774 IIRLKATIDTDK-SGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKE 832 Query: 777 RKLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLV 828 R L+ V + + + N + ++ E ++K L + + ++ ++ M + Sbjct: 833 RALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFL 892 Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K D Sbjct: 893 SVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNFEKVD 951 Query: 887 QAIAGVASF 895 + + + F Sbjct: 952 EIVQLASKF 960 >gi|17861846|gb|AAL39400.1| GM03058p [Drosophila melanogaster] Length = 966 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 316/968 (32%), Positives = 482/968 (49%), Gaps = 95/968 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT+ L Sbjct: 69 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALP 128 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + + D E ++W + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L A + TG Y+G +++ + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + + L ID+ + A + + S G G+ E+I + + +Q Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + + K + + GV +S + A+ + + V E SGQK +V D+T F Sbjct: 477 VPPTNDTFKYKYDAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536 Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE+GGQ+ D G + D + D G +H +VE G L+ L L ID + Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQL 655 Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EYE 684 +++ +N+P+ + + A+A G ++ Y D VRV+S + E Sbjct: 656 TKEMVYKNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDSE 713 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + + Sbjct: 714 AGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQE 773 Query: 745 LASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHAKR 777 + + G+ V+EI E E R L L +R Sbjct: 774 IVRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKER 833 Query: 778 KLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLVG 829 L+ V + + + N + ++ E ++K L + + ++ ++ M + Sbjct: 834 ALRAAVSVTVVERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLS 893 Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K D+ Sbjct: 894 VDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDE 952 Query: 888 AIAGVASF 895 + + F Sbjct: 953 IVQLASKF 960 >gi|297626345|ref|YP_003688108.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922110|emb|CBL56678.1| Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 895 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 320/925 (34%), Positives = 474/925 (51%), Gaps = 82/925 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I F++FF GH +PS+SL+ NDPTL+F N+GMVPFK G+ ++ T Sbjct: 2 KAAEIGRRFVDFFVSKGHTEVPSASLL-YNDPTLLFVNAGMVPFKPYLMGELPAPWKRAT 60 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK-----E 117 ++QKCVR D++ VG+T RH TFF+MLGNFSFG YFK+ AI+ AW+L+T Sbjct: 61 SIQKCVRT----LDIEEVGKTTRHGTFFQMLGNFSFGDYFKKEAIEFAWELVTGPLAEGR 116 Query: 118 FDLDQRRLYITV--------YDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 D +++TV Y E D EA W + G+ + I DN+W M GP Sbjct: 117 LGFDPNMVWVTVLGPGFHPDYPEGDTEARDTWLSL-GVPPEHIQGRGLKDNYWHMGVPGP 175 Query: 169 CGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFE---QQNKQERFILPKM--- 222 GPCSEI+ D+G G G + +R++EIWNLVF E ++K++ I M Sbjct: 176 GGPCSEIYIDRGPKY-GAEGGPEADEDRFLEIWNLVFETEELSTVRSKEDFDIAGPMKTR 234 Query: 223 SIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--VNHRVIVDHLR 280 +IDTG GLER+A ++Q N Y+ D +I+ + + G +Y ++ V RV+ DH+R Sbjct: 235 NIDTGAGLERIALLMQGVDNMYETDEVFPVIERAAAMAGKRYGADHTDDVRLRVVGDHVR 294 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPEL 340 SS L+ DG+ P NE RGYVLRR+MRR + RLLG + + LL M + YPE+ Sbjct: 295 SSLMLMTDGVTPGNEARGYVLRRLMRRTIRSMRLLGVEKVSLTELLDVSRQCMHATYPEI 354 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKLYDTHGLP 397 I++ +E E F +TL+ G L D ++ G +E L GD AF+L+DT+G P Sbjct: 355 DDQWERIKDIADNESESFERTLNSGTQLFDMAVAEARAAGSNE-LGGDKAFQLHDTYGFP 413 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ ++ +GL +D +F +++Q++RA+A + + + G T F Sbjct: 414 IDLTLEMASEQGLH-VDETAFRTLMDQQKARAKADAKAKKGNLQDAESYRELRDRGETPF 472 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 +GY L V + V+ +V G +V+ +GQ EVV ++ Sbjct: 473 VGYSELT-----------------------VPTRVRGLVADGHVVDHLRAGQLGEVVLEE 509 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D G D ++ DVQ+ G+ V H + G LR + +D Sbjct: 510 TPFYAEMGGQDADAGVLRSDAGEFEVIDVQRPVPGLVV-HTVRAGGELRPGDEVQAMVDA 568 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 +R+ HSATH++H AL ++G +Q GS P LRFD S +++A IE Sbjct: 569 VHRQGACQAHSATHIIHAALRELVGPTATQAGSYNKPGYLRFDFNSSHGLSAALKAEIEA 628 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGT 697 N I +L V M A GA A+ G KY D VRVV E GG S LC GT Sbjct: 629 RCNAAIRDDLEVSATQMPLAQAKGMGAMAMFGEKYPDIVRVV----EMGGPWSRELCAGT 684 Query: 698 HVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVV 757 HV +I +L ++ E S+ AG RR+EA+ A H+ + + L LKV + Sbjct: 685 HVLHASQIGMLNLLGEQSVGAGTRRVEALVSTDAFEHMAAERALVNQLTGTLKVQPDQLT 744 Query: 758 GRVEEIWE----------EYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSK 807 RV + E E + QL+ +L + +D+ V+F S +VD+ Sbjct: 745 DRVGALIEELKVAQKQIAELKAAQLLAGAPQLVSDAKDMWG-----VSFASKRYHDVDAG 799 Query: 808 ELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLG 864 L+++ ++ + +S ++ LVG S K A +++ T DR NA L R + Sbjct: 800 ALRTLAGQVRDQFGDRSAVVALVGGSATKPA-LVVATTRAARDRGLNAGALVR-EGAGVL 857 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAI 889 GG GGG+P +AQ GG + KAD+A+ Sbjct: 858 GGNGGGKPDLAQGGGTDAGKADEAL 882 >gi|296231556|ref|XP_002761188.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic [Callithrix jacchus] Length = 968 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 308/859 (35%), Positives = 450/859 (52%), Gaps = 85/859 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY----- 58 S IR F+EFF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 7 ASEIRQRFIEFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKL 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+EF Sbjct: 67 SRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEF 126 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPCG Sbjct: 127 GIPIERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLEDTKILPGNMKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDTG Sbjct: 186 PCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGILKPLPKKSIDTG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278 MGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ DH Sbjct: 242 MGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 R+ + +ADG P N GRGYVLRRI+RRA+ YA L + L+ + +G A+ Sbjct: 302 ARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAF 361 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G P Sbjct: 362 PELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKILSLGDSKTIPGDTAWLLYDTYGFP 421 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ I +GL +D+ F EE+R A+ S G G+G + I + Y + Sbjct: 422 VDLTGLIAEEKGLL-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEEL 473 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 L K + + N V++++ A+ ++ VEE +GQ+ VV D+ Sbjct: 474 RAQGLEVTDDSPKYNYHSDSSGNYV-FENTVATVL-ALRREKMFVEEVSTGQECGVVLDK 531 Query: 518 TPFYAEAGGQLGDTGCAI----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 T FYAE GGQ+ D G + + + + T + G +V H G L+ + L Sbjct: 532 TCFYAEQGGQIYDEGYLVKVDDSNEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVRL 591 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T +++ ++K Sbjct: 592 FIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFDFTAKGAMSTQQIK 650 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----EYED-- 685 E+ N++I PV T+ A A G A+ Y D VRVVSV E D Sbjct: 651 KAEEIANEMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSVGVPVSELLDDP 710 Query: 686 ----GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G + S CGGTH+ ++ IV+E +I GIRRI A+TG A+ L K Sbjct: 711 SGPAGSLTSVEFCGGTHLQNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKAL----RK 766 Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--FMSH 799 +SL + L L+ AK K Q +IAD+ + Sbjct: 767 AESLKT---------------------SLSLMEAKVKAQTAPNKDVQREIADLGEVLATA 805 Query: 800 IISEVDSKELKSVMDALQK 818 +I + EL+ + +L+K Sbjct: 806 VIPQWQKDELRETLKSLKK 824 >gi|145616046|ref|XP_361064.2| hypothetical protein MGG_03607 [Magnaporthe oryzae 70-15] gi|145009817|gb|EDJ94473.1| hypothetical protein MGG_03607 [Magnaporthe oryzae 70-15] Length = 961 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 332/968 (34%), Positives = 498/968 (51%), Gaps = 103/968 (10%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIF---TGQEKPV--YQA 60 ++R TFL +F++ GH ++PSSS++P +DPTL+FTN+GM FK IF G+ P+ + Sbjct: 11 TVRKTFLNYFEERGHTVVPSSSVVPHSDPTLLFTNAGMNQFKPIFLGTIGKTDPMAGLKR 70 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI ++W+LLTK + L Sbjct: 71 AVDSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAISMSWELLTKVYGL 130 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D RLY+T + + D EA LW + +G+ D I+ DNFW M + GPCGPC Sbjct: 131 DPARLYVTYFEGNPEMGLEPDLEAKNLWLE-NGVPEDHILPGNMKDNFWEMGDQGPCGPC 189 Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI +D+ GG + + + +E+WN VF+QF++Q + LP +DTGMG Sbjct: 190 SEIHYDK----VGGRNAAHLVNMDDPLVVEVWNNVFIQFDRQQDKSLKSLPAKHVDTGMG 245 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLR 280 ER+ + LQ KT+NY D+F L ++VTG KY ++ +RV+ DH+R Sbjct: 246 FERLVSALQNKTSNYATDVFSPLFARIQEVTGAREYTDKYGKDDADGIDTAYRVVADHIR 305 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 +F IADG +P N+GRGYV+RR++RR + YAR E +LP L MG +P Sbjct: 306 LMAFSIADGAVPNNDGRGYVVRRVLRRGVRYARKYFNAEIGGFFSQILPTLVEHMGEQFP 365 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGL 396 EL Q + I+E L E+E F +TLDRG + S K + L+G ++LYDT G Sbjct: 366 ELGQKQQDIKEILDEEEEAFARTLDRGEKQFEKYASMAIKAGENKLSGSDVWRLYDTFGF 425 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P D+ + + RG+ ID + A E+ R ++A +KE Sbjct: 426 PEDLTKLMAEERGIT-IDEAEVSVAREKAREASKA----------------VKE--SVQT 466 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSGQKVEV 513 F D+ R S+ E + L ++S V I + + +E + + Sbjct: 467 FAKLDVHRISELENELKVTRTDSEAKYLKGDITSKVYLIYTGKDFLKSSKEIPPKTPLGL 526 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+T FYAE+GGQ+ DTG + DG+ ++ D Q+ G +H+ +E G L S++ Sbjct: 527 ILDKTNFYAESGGQIADTGRIVIDGVAEFKVLDTQEFG-GYVLHNGYLEYGELTAGDSVI 585 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 D R+ + NH+ TH+L+H+L +LG ++Q GS + + LRFD +H +T EL Sbjct: 586 CEYDELRRQPIRNNHTGTHILNHSLREVLGDDINQKGSLVDNEKLRFDFSHKTGVTVPEL 645 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------- 684 K IED N I QN T+ ++ + A G A+ G Y + VRVVS+ E Sbjct: 646 KKIEDLSNAYIRQNCKTFTKDVDLDLAKQIEGVRAVFGETYPNPVRVVSIGIEVDMLLEN 705 Query: 685 ----DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSH 734 + S CGGTHV TG + + IV ES I GIRRI A TG QR + Sbjct: 706 PKNPEWRKVSVEFCGGTHVDQTGIMKDMIIVEESGIAKGIRRIVAYTGDAAHQVQRLAAD 765 Query: 735 LMGQDEKLKSLA------SFLKVSQGN----VVGRV--EEIWEEYRKLQ----------- 771 + ++L+SL + +K +Q + V+ V +E+ + K+Q Sbjct: 766 FSKRIDELESLPFGTEKEAAIKTTQVDLEQLVISSVTKDELRTRFTKIQKAVVEEQKKKQ 825 Query: 772 LIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 +K+ L E + A+ F+ + ++K + +M+ + K + + + G Sbjct: 826 KAESKKALDTVAEHFKKPEKAESKVFIGQLPISANAKAVSEIMNFYKSKDKEKSVYVFGG 885 Query: 831 SKEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 SKE+ A V + V T A A ++V+GG GG P Q G +QA Sbjct: 886 SKEEGAVVHGVYVGTALASQGITAEQWANAVSEVIGGKSGGKEP-TRQGQGTKPENLEQA 944 Query: 889 IAGVASFL 896 +A FL Sbjct: 945 VAEAEKFL 952 >gi|154321327|ref|XP_001559979.1| hypothetical protein BC1G_01538 [Botryotinia fuckeliana B05.10] gi|150852076|gb|EDN27268.1| hypothetical protein BC1G_01538 [Botryotinia fuckeliana B05.10] Length = 952 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 329/981 (33%), Positives = 486/981 (49%), Gaps = 152/981 (15%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FL FF+KN H ++PSSS++P NDPTL+FTN+GM FK IF G + + Sbjct: 15 VRKQFLSFFEKNAHSVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLG----TVGKTDDMAQ 70 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 RA DLD+VG+ + HHTFFEMLGN+SFG YFK AI +AW+LLTK + LD RLY Sbjct: 71 LKRAVDTQKDLDDVGKDSYHHTFFEMLGNWSFGDYFKADAIGMAWELLTKVYGLDSDRLY 130 Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T ++ D EA LW K +G+ D I+ DNFW M ETGPCGPCSEI +D Sbjct: 131 VTYFEGDAENNVPADTEAKNLWLK-AGVKEDHILTGNMKDNFWEMGETGPCGPCSEIHYD 189 Query: 179 QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + I GG + +++ +EIWN+VF+QF++Q + LP IDTGMG ER+ + Sbjct: 190 R---IGGGRNAAHLVNQDDPNVLEIWNIVFIQFDRQKDRSLKTLPAKHIDTGMGYERLVS 246 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRSSSFLI 286 VLQ+K++NYD D+F L ++VT KY ++ +RV+ DH+R +F I Sbjct: 247 VLQDKSSNYDTDVFSPLFAKIQEVTNARPYTDKYGKDDTDGIDTAYRVVADHIRLLTFAI 306 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAK 344 +DG +P NEGRGYV+RR++RR YAR E +LPAL +MG +PE+++ + Sbjct: 307 SDGGVPNNEGRGYVVRRVLRRGSRYARKYFNAEIGSFFSKILPALVEQMGEQFPEIVKKQ 366 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQ 402 ++E L E+E F +TLDRG + + + K L+G ++LYDT G P D+ + Sbjct: 367 QDVKEILDEEEEAFARTLDRGEKMFEKYAAQAIKTNTKKLSGADVWRLYDTFGFPEDLTK 426 Query: 403 DILCARGL---AGIDIISFNQALEEQRS-RARAHSLG------------LG-SGTTEKIW 445 + RGL G I+ +A E +S + AH+ +G + Sbjct: 427 IMAEERGLETDEGEIEIAKEKAREASKSVKEAAHTFAKLDVHQIAELDNMGIPRPNDDAK 486 Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505 FS + G Q I YD G F+K + KP Sbjct: 487 FSKGDSTGKIQLI-YD---GKNFLKSTADLPNDKP------------------------- 517 Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGI 564 ++ D+T FYAE GGQ+ DTG I DG+ ++ D Q G VH+ ++ G Sbjct: 518 -----FGILLDKTNFYAEQGGQVFDTGKIIIDGVAEFKVLDTQAYG-GYIVHNGYMDYGD 571 Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624 + ++ D R+ + NH+ TH+L+HAL LG ++Q GS + + LRFD +H Sbjct: 572 FKAGDEVICEYDELRRQPIRNNHTGTHILNHALREHLGEDINQKGSLVDQEKLRFDFSHK 631 Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKY----------- 672 +T ELK +ED+ N I QN + ++ ++ + A G A+ G Y Sbjct: 632 AQVTLPELKKVEDSANSYIKQNCKIYSKDVDLDIAKGIEGVRAVFGETYPNPVRVVSVGV 691 Query: 673 ----------NDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 N R VSVE+ CGGTHV TG I L IV ES I GIRR Sbjct: 692 EVDVLLAEPKNPEWRKVSVEF----------CGGTHVDQTGIIKDLVIVEESGIAKGIRR 741 Query: 723 IEAITG------QR-------------ARSHLMGQDEKLKSLASFLKVSQGNVVGRVE-- 761 I A TG QR A H + +++++KS + L +V+ + + Sbjct: 742 IIAYTGDAAHEVQRIAMEFGKRIAALDAMPHGVEKEQEVKSTQNDLNHLTISVLAKEDLK 801 Query: 762 --------EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSV 812 ++ +E +K Q +K L + K D +++ + +SK + V Sbjct: 802 KKFTKVQKDVLDEQKKKQKAESKTALDTVTAYFADSKNKDSTAYIAQLPISANSKAIADV 861 Query: 813 MDALQKKIQSGIIMLVGISKEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 M+ + K + + L G S + A V + V T+ +A A ++V+GG GG Sbjct: 862 MNHFKSKAKDKTVYLFGGSASEGAVVHGVYVGTDAASKGVSAEQWAAAVSEVVGGRSGGK 921 Query: 871 RPHMAQSG-GPNGNKADQAIA 890 P ++G G N +K + A+A Sbjct: 922 EP--TRTGQGTNPDKIEDAVA 940 >gi|302670582|ref|YP_003830542.1| alanyl-tRNA synthetase AlaS [Butyrivibrio proteoclasticus B316] gi|302395055|gb|ADL33960.1| alanyl-tRNA synthetase AlaS [Butyrivibrio proteoclasticus B316] Length = 884 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 311/914 (34%), Positives = 481/914 (52%), Gaps = 67/914 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R + +F++ GH + SL+ +MF +GM P G++ P+ + VQ Sbjct: 9 LREAWKQFYKDRGHVDCGAVSLVSDGSTGVMFNVAGMQPLMPYLLGKKHPMGTRLCNVQG 68 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR ND+D+VG + H TFFEM+G++S G YFK+ Q +++LLT+ F D L Sbjct: 69 CVRT----NDIDSVGDKS-HGTFFEMMGSWSLGDYFKKERCQWSFELLTQLFGFDADHLA 123 Query: 127 ITVYDEDEEAFK-----LWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF--DQ 179 TV+ DE A + ++ SG + I + DN+W + E GPCGP SE+F+ D Sbjct: 124 ATVFAGDENAPRDEEGAKYRIESGFKPENIYYLPAEDNWWGL-EYGPCGPDSEMFYVKDM 182 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 +C P PG +Y EI N VFMQ+E+ + L + ++DTG GLER+ L Sbjct: 183 PDCGPNCGPGC--HCGKYTEIGNDVFMQYEKHHDGHLTPLTQKNVDTGWGLERILAFLNG 240 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH--RVIVDHLRSSSFLIAD--GILPANE 295 + Y IDL +I E+ +G+KYE + R++ DH R+S LI D +LP+N Sbjct: 241 VDDVYKIDLHAPVIAYIEKESGLKYESDEKTTRSMRILADHTRTSVMLIGDEAKLLPSNT 300 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 G GY+LRR++RRA+ +AR LG + ++ + E +Y L + + + L E Sbjct: 301 GAGYILRRLIRRAVRHARTLGLNKDQILGVATIYIDEYSESYENLAKNRKFVLTELEREI 360 Query: 356 ERFGKTLDRGLVLLDGVL---SHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 RF TL+ G+ +L S GK EI G AF LYDT G P+++ ++ G Sbjct: 361 TRFESTLENGMKEFRKILDKTSAAGKKEI-EGKDAFFLYDTFGFPVELTVELADEEGFT- 418 Query: 413 IDIISFNQALEEQRSRARAH---SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFM 469 +D F ++EEQ+ +AR + S L +GT ++ +L E AT+F+GY+ Sbjct: 419 VDEEGFKASMEEQKQKARENQNFSANLSTGTG--LFDNLDESV-ATEFLGYE-------- 467 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 K+ C V I +V E GQ+ ++ D+T FY GGQ+G Sbjct: 468 ----KLEC-----------DGTVAVIAGADALVTELTEGQQGTIITDKTTFYGTMGGQVG 512 Query: 530 DTGCAIG-DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHS 588 D G +G +G + ++T+ K A G H V G + + L++D +NR + NHS Sbjct: 513 DIGEILGSNGAKFEVTEAVKVAGGRTAHVGKVVSGSFKVSDKVTLSVDAENRAKTCRNHS 572 Query: 589 ATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 ATHLL AL +LG V Q GS PD RFD ++ + +T+ E+K +ED VN I + LP Sbjct: 573 ATHLLQKALQMVLGDGVEQAGSYQDPDKTRFDFSYHQAMTADEIKKVEDIVNSKILEALP 632 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 VVT+ M+ EDA +GA AL G KY + VRVV++ G S LCGGTHV++T I L Sbjct: 633 VVTKEMSIEDAKKTGAMALFGEKYGETVRVVNM-----GDFSIELCGGTHVANTSHIGLF 687 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR 768 I+SES + AG+RRIEA+TG AR++ + L A LK + ++V ++++ EE + Sbjct: 688 KILSESGVAAGVRRIEALTGDNARAYYKNVEANLGEAAKTLKTTPADLVDHIKKLQEELK 747 Query: 769 KLQLIH---AKRKLQLNVEDL--SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSG 823 L+ + ++ Q + D+ +I V ++ + VD L+ + D ++ K+ G Sbjct: 748 NLRSENESLKSKEAQAALGDVMDQVLEIKGVKLLATSVKGVDMNGLRDLGDQMKTKLGEG 807 Query: 824 IIMLVGISKEKKASVLIVVTEDLLDRFNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNG 882 +++L+ + K V + + +A +L + ++ KV GGGGGRP+MAQ+GG N Sbjct: 808 VVVLISEADGKVNLVTMATDGAMAKGAHAGNLVKAIAPKVG--GGGGGRPNMAQAGGKNP 865 Query: 883 NKADQAIAGVASFL 896 A+A + L Sbjct: 866 AGIQDALAEAKTVL 879 >gi|297284439|ref|XP_002808351.1| PREDICTED: LOW QUALITY PROTEIN: alanyl-tRNA synthetase, cytoplasmic-like [Macaca mulatta] Length = 967 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 297/808 (36%), Positives = 434/808 (53%), Gaps = 87/808 (10%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYIHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPIGRLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDTKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-----LLGYTEPLMMHLLPALCTE 332 H R+ + +ADG P N GRG++LR R A + + + G+ +PL+ LLP LC Sbjct: 301 HARTITVALADGGRPDNTGRGFLLREPPRPARRFFKRGXGIVFGFIQPLI--LLP-LC-- 355 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 G A+PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYD Sbjct: 356 QGDAFPELKRDPDMVKDIVNEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYD 415 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+D+ I +GL +D+ F EE+R A+ S G G+G + I + Y Sbjct: 416 TYGFPVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---Y 467 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT------NGVSSIVKAIVQQGEIVEEAV 506 + RG + + K +D + N V++++ A+ ++ VEE Sbjct: 468 AIEELRA----RGLEVTDDSPKYNYH---LDFSGSYVFENTVATVM-ALRREKMFVEEVS 519 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIV 560 +GQ+ VV D+T FYAE GGQ+ D G + D + + Q + G +V H Sbjct: 520 TGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGT 577 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 G L+ + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD Sbjct: 578 IYGDLKVGDQVRLFIDEPRRRPIMSNHTATHILNFALRSVLG-EADQKGSLVAPDRLRFD 636 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679 T +++ ++K E+ N++I PV T+ A A G A+ Y D VRVV Sbjct: 637 FTAKGAMSTQQIKKAEEIANEMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVV 696 Query: 680 SV-----EYED------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 S+ E D G + S CGGTH+ ++ IV+E +I GIRRI A+TG Sbjct: 697 SIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTG 756 Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNV 756 A+ L K +SL L V + V Sbjct: 757 AEAQKAL----RKAESLKKSLSVMEAKV 780 >gi|147677395|ref|YP_001211610.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI] gi|146273492|dbj|BAF59241.1| alanyl-tRNA synthetase [Pelotomaculum thermopropionicum SI] Length = 537 Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust. Identities = 231/555 (41%), Positives = 349/555 (62%), Gaps = 38/555 (6%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR ++L+FF+K GH++LPS+SLIP NDP++++T +GMVPFK FTG KP Y VTT Sbjct: 4 NEIRESYLKFFEKKGHKILPSASLIPLNDPSILWTAAGMVPFKPFFTGAAKPEYTRVTTC 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R D+++VG+T RHHTFFEMLGNFSFG YFKE AI AW+ +T+ L + Sbjct: 64 QKCIRT----PDIESVGKTARHHTFFEMLGNFSFGDYFKESAIPWAWEFVTEHLRLPADK 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+I+++ +D+EAF++W K G+ A +I+R+ + NFW + GPCGPCSEI+ D G Sbjct: 120 LWISIFLDDDEAFEIWNKTVGVPAGRIVRMGKDTNFWEIG-VGPCGPCSEIYVDLGAERG 178 Query: 185 GGLPGSSE--EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTN 242 G P + +R++EIWNLVF+QF + + L IDTG GLER+A+V+Q Sbjct: 179 CGSPECKVGCDCDRFLEIWNLVFIQFFKDEEGNYTPLTSKGIDTGFGLERVASVMQGVPT 238 Query: 243 NYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYV 300 N+D DLF+ ++ + + G+KY +G V +VI DH R+ +F +ADG LP+NEGRGYV Sbjct: 239 NFDTDLFREIMDFTAGLFGLKYGVDGRVDVALKVIADHCRAITFAVADGALPSNEGRGYV 298 Query: 301 LRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGK 360 +RR++RRA+ + RLLG +P + + A+ +MG YPEL+ + + +R E+ERFG+ Sbjct: 299 IRRLLRRAVRFGRLLGIEDPFLHEVSGAVVRQMGRVYPELVTQREHVFRVIRREEERFGE 358 Query: 361 TLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 TL +G +L+ +++ + +++G+ AF+LYDT+G PL++ Q++ +GL +D F Sbjct: 359 TLAQGTEMLNRLIAEARQAGSAVVSGEDAFRLYDTYGFPLELTQEMAGEQGLT-VDTDGF 417 Query: 419 NQALEEQRSRARA--HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 +A+EEQR RAR+ SG + ++ ++E+ G T F+GYD L Sbjct: 418 GRAMEEQRQRARSARQETDYISG-RDAMFKKMREEVGETVFVGYDALE------------ 464 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + V IVQ G+ +E A +G++VE + D TPFYAE+GGQ+ D G Sbjct: 465 -----------ATGRVLRIVQGGKRLESAQAGEEVEFILDVTPFYAESGGQVSDRGKVTA 513 Query: 537 DGIRLQITDVQKKAE 551 + ++I +V K E Sbjct: 514 ADLEVEIHEVTKPVE 528 >gi|198437569|ref|XP_002125465.1| PREDICTED: similar to alanyl-tRNA synthetase [Ciona intestinalis] Length = 967 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 332/981 (33%), Positives = 494/981 (50%), Gaps = 110/981 (11%) Query: 3 NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57 N +R FL FFQ K H + SSS IP +DPTL+F N+GM FK+IF G P Sbjct: 6 NSKQLRQMFLSFFQEKYAHTYIHSSSTIPLDDPTLLFANAGMNQFKSIFLGTISPADPLS 65 Query: 58 -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLG +SFG YFK+ AI AW+LLT+ Sbjct: 66 KCKRVVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGCWSFGDYFKKDAINWAWELLTE 125 Query: 117 EFDLDQRRLYITVYDE--------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + RLY T ++ D E LW + L AD I+ DNFW M + GP Sbjct: 126 VLKIPKDRLYATYFEGSEEYNVPVDTEVQNLW--LQHLPADHILPGNMKDNFWEMGDVGP 183 Query: 169 CGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 CGPC+EI FD+ GG + + + +E+WNLVFMQF ++ + +L K +D Sbjct: 184 CGPCTEIHFDR----IGGRNAAHLVNMDDPEVLEVWNLVFMQFNREKDGKLKLLAKQHVD 239 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIV 276 TGMGLER+ +V+Q K +NYD D+F L +A + TG + Y+G +++ + +RV+ Sbjct: 240 TGMGLERLVSVIQGKLSNYDTDMFTPLFKAIQLGTGAREYQGKVGKDDVDGVDMAYRVLA 299 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGS 335 DH+R+ + ++DG P N GRGYVLRRI+RRA +A L L+ + +G Sbjct: 300 DHIRTLTIALSDGGRPDNVGRGYVLRRILRRATRFAVEKLNAKPRFFSSLVHVVVDILGE 359 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTH 394 A+PE+I+ ++ + + E+E+F KTL+RG +L+ + L D ++ G+ A+ LYDT+ Sbjct: 360 AFPEIIRDPQMVIDIIDEEEEQFLKTLNRGRKILNQKIKSLDADAKVFPGETAWLLYDTY 419 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P D+ + + GL +D SF +A +++AR S G + I + + Sbjct: 420 GFPFDLTEIMAEESGLT-VDCESFEKA----KAQARITSKGFAQDVADTICLDV---HML 471 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG------VSSIVKAIVQQGEIVEEAVSG 508 T L+ KF D Q D NG + +VKAI+Q V SG Sbjct: 472 TD------LKEKKFPPTDDSFKYQYSSND--NGEYSFPACTGVVKAILQNKTFVTSVSSG 523 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRL-QITDVQKKAEGIFVHHAIVERGILRT 567 + ++ D+T FYAE GGQL D G + T + +G +V H G L Sbjct: 524 AECGILLDKTCFYAEQGGQLFDLGYFKKQEDEFTEFTVKNCQVQGGYVLHVGTVAGTLEV 583 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 S+ L ID Q R+ L NHS TH+L+ L +LG Q GS + P+ LRFD T K + Sbjct: 584 GDSVELFIDEQRRQSLMKNHSCTHILNFGLRCVLG-EADQRGSLVAPNRLRFDFTAKKAM 642 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE-- 684 TS ++K ED N I+ ++ + + + + A A G A+ Y D VRV+SV Sbjct: 643 TSQQVKETEDVCNQIVNKDEVIYAKPVPLDQAKAIHGLRAIFDETYPDPVRVLSVGVSVD 702 Query: 685 --------DGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA---- 731 D +++S LCGGTH+ +G I+SE +I G+RRI A+TGQ A Sbjct: 703 SLVADPNFDAAMNTSVELCGGTHLLRSGHADKFIIISEEAISKGVRRIVAVTGQEALKAE 762 Query: 732 -RSHLMGQD-EKLKS------------LASFLK--------VSQGNVV-GRVEEI--WEE 766 +++L+ + E +KS +F K VSQ ++ R EE+ + Sbjct: 763 RKANLLAKSFETIKSEVEKGLVNNKENYKTFSKKCTDFIELVSQASISQWRREEMRGFAS 822 Query: 767 YRKLQLIHAKRKLQLNVEDLSCHKIA-----DVNFMSHIISEV----DSKELKSVMDALQ 817 K ++ R ++ N L+ + D N + +++E+ ++K L + + Sbjct: 823 SLKKKVDDVDRVMKENATKLALAQTKESIQQDPN-ATFVVTELKTNGNAKSLNEALKIYK 881 Query: 818 KKIQSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + +ML I KE K L V D+ + S G GGG+ AQ Sbjct: 882 SESPDTSVMLFSIDKEANKIVCLSQVPASANDKGLTANGWVQSIATTLNGKGGGKSTSAQ 941 Query: 877 SGGPNGNKADQAIAGVASFLK 897 + G N + ++AI F K Sbjct: 942 AVGRNPDGLNEAIQLAKEFAK 962 >gi|289444091|ref|ZP_06433835.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Mycobacterium tuberculosis T46] gi|289417010|gb|EFD14250.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase [Mycobacterium tuberculosis T46] Length = 877 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 319/902 (35%), Positives = 478/902 (52%), Gaps = 66/902 (7%) Query: 25 SSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTN 84 SS+ C T +++S + + + P Y T++Q + G T Sbjct: 1 SSTTPTCCSSTPGWSSSCLSSWD-----KSTPPYPTATSIQPV----HPYPRYRRGGITT 51 Query: 85 RHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKL 139 RH+TFF+M GNFSFG YFK AI+LAW LLT + LD R++ TVY +D+EA +L Sbjct: 52 RHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRL 111 Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGERYI 198 W++++GL A++I R DN+WSM GPCGP SEI++D+G E P G P SE+ RY+ Sbjct: 112 WQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYL 169 Query: 199 EIWNLVFMQFE------QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252 E+WNLVFMQ E +++ Q LP+ +IDTGMG+ER+A VLQ+ N Y+ DL + + Sbjct: 170 EVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPV 229 Query: 253 IQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309 I +V Y+ GN + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR + Sbjct: 230 IDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVI 289 Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369 A+LLG ++ L+ + MG +YPEL+ I +E+ F +TL G L Sbjct: 290 RSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLF 349 Query: 370 DGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427 + V S K +L+G AF L+DT+G P+++ ++ GL +D I F + + EQR Sbjct: 350 EEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGLQ-VDEIGFRELMAEQRR 408 Query: 428 RARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487 RA+A + + + GAT+F G+D LR S+ V ++ P+ + +G Sbjct: 409 RAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQARILGIFVDGKRVPV-VAHG 466 Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQI 543 V+ A GQ+VE+V D+TP YAE+GGQ+ D G G G R + Sbjct: 467 VAG-------------GAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAV 513 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 TDVQK A+ ++VH VE G +++ +D RR + HS TH++H AL +LG Sbjct: 514 TDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGP 573 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 + Q GS P LRFD P+T + +E+ N+ + + V T + A A G Sbjct: 574 NAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMG 633 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G Y D VRVV E GG S LCGGTHVS+T +I + I+ ESSI +G+RR+ Sbjct: 634 AIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRV 689 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL---- 779 EA G + HL + + LAS LKV V RV + E R + + ++ Sbjct: 690 EAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASAR 749 Query: 780 -QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKAS 837 +I +V ++ +S + + +L+S++ ++ K+ S ++ I++ + + Sbjct: 750 AAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQT 809 Query: 838 VLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGV 892 V V +DL R N DL + A + G GGG+ +AQ G N D A+ V Sbjct: 810 VPYAVAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAV 866 Query: 893 AS 894 S Sbjct: 867 RS 868 >gi|195155623|ref|XP_002018701.1| GL25810 [Drosophila persimilis] gi|194114854|gb|EDW36897.1| GL25810 [Drosophila persimilis] Length = 966 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 319/969 (32%), Positives = 488/969 (50%), Gaps = 97/969 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +L FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRDAYLGFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT L Sbjct: 69 CNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTNRLHLP 128 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + DE E +LW + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDEASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L +A + TG Y+G +++ + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGTLVNTVVDLLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I + + E+ +F KTL RG LL+ + LG I+ GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQSIIPGDVAWRLYDTYGFPVDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + + L ID+ + A + + S G G+ E+I + + +Q Sbjct: 425 QLMAEEKSLE-IDMAGYEAA----KQNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476 Query: 462 LLRGSKFMKEDRKVLCQK--PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + + K + + ++ + S IV A+ + + V E +GQK +V D+T Sbjct: 477 VPPTNDSFKYKYEAVSEERDSAYNYQECTSKIV-ALRFENQFVNEISNGQKAGIVLDKTN 535 Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE+GGQ+ D G + D + D G +H +VE G L+ L L ID Sbjct: 536 FYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELQLHIDE 594 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E Sbjct: 595 ERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKAAMTIEQVAKTEQ 654 Query: 638 NVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EY 683 D++ +N+P+ + + A+A G ++ Y D VRV+S + Sbjct: 655 LTKDMVYKNVPIYAK--ESKLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDA 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-----RSHLMGQ 738 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A +S Q Sbjct: 713 EAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFEQ 772 Query: 739 D-EKLKSLASFLKVSQGNV--VGRVEEIWEEYRKLQLIHAKR----------KLQLNVED 785 + KLK+ K + + V + E+ E+ + + K+ K L+ ++ Sbjct: 773 EIVKLKATIDADKSGKDSKSHVKEIVELTEQISHATVPYVKKDEMRNLLKGLKKTLDDKE 832 Query: 786 LSCHKIADVNFMSH-------------IISEVDSKELKSVMDALQKKIQSGI----IMLV 828 S VN + ++ ++++ +DA K++++ + M Sbjct: 833 RSLRAAVSVNVVERAKELCEANPGANVLVQQLEAFNNTKALDAALKQVRTQLPDAAAMFF 892 Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + KK L V + +++ A + + + L GG GGG+P AQ+ G N ++ + Sbjct: 893 SVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSPTL-GGKGGGKPESAQASGSNYDRVE 951 Query: 887 QAIAGVASF 895 + I F Sbjct: 952 EIIQLATKF 960 >gi|195438477|ref|XP_002067163.1| GK24844 [Drosophila willistoni] gi|194163248|gb|EDW78149.1| GK24844 [Drosophila willistoni] Length = 967 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 316/968 (32%), Positives = 481/968 (49%), Gaps = 94/968 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +L FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRDAYLGFFKEKKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGIADPNSEMSKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT L Sbjct: 69 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTDRLKLP 128 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + DE E +LW + G+ + ++ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDEASGLEPDLECKQLWLDL-GIKPEHVLPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + +++ +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NQDDPDVLEIWNLVFIQYNRESDGSLKPLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSS 282 R+ +V+Q K +NYD DLF+ L + + TG Y+G + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFQPLFEHIQSSTGAPAYQGRVGADDSDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P M L E +G A+PE+ Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLKAKPGMFASLVNTVVELLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDI 400 + I + + E+++F KTL RG LL+ + LG D+ I+ GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIIDIINEEEQQFLKTLTRGRNLLNRTIEKLGADQKIIPGDVAWRLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + + L ID+ + A + + S G GS E+I + Q G Sbjct: 425 TQLMAEEKSLE-IDMAGYEAA----KQNSYILSQGKGSSKIEEINLDV-HAISQLQDQGV 478 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 S K + + + P + S I+ AI + + V+ +GQK +V D T F Sbjct: 479 PTTNDSFKYKYEAESEERDSPYNYETCSSKIL-AIRFENQFVQSISNGQKAGIVLDNTNF 537 Query: 521 YAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE+GGQ+ D G + D + D G +H +VE G L L L ID Sbjct: 538 YAESGGQIYDQGALVKANDEANEFLVDRVYNRGGYILHIGVVE-GTLAVGDDLQLHIDVT 596 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E+ Sbjct: 597 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKGAMTIEQVAKTEEL 656 Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVS----VEY-------E 684 ++ +N+P+ + + A+A G ++ Y D VRV+S VE E Sbjct: 657 TRQMVYKNVPIYAK--ESKLAVAKSIRGLRSVFDEVYPDPVRVISFGVPVEQLEEQPNGE 714 Query: 685 DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKS 744 G S CGGTH+ +G IM I SE +I GIRRI A+TG A + ++ + Sbjct: 715 AGDNTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEAIKAIKKSEQFEQE 774 Query: 745 LASFLKVSQGNVVGR--------VEEIWEEYRKLQLIHAKR----------KLQLNVEDL 786 + + + + G+ + E+ E+ + + K+ K L+ ++ Sbjct: 775 IVTLKATIEADTTGKDSKQHVKQIVELTEQISHATIPYVKKDEMRNLLKSLKKTLDDKER 834 Query: 787 SCHKIADVNFMSH-------------IISEVDSKELKSVMDALQKKIQSGI----IMLVG 829 + V + ++ ++++ +DA K+++S + M Sbjct: 835 ALRAAVSVTVVERAKALCEENPTATVLVQQLEAYNNTKALDAALKQVRSQLPDTAAMFFS 894 Query: 830 ISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQ 887 + + KK L V + +++ A + + ++ L GG GGG+P AQ+ G N D+ Sbjct: 895 VDVDSKKIFCLSSVPKSAVEKGLKANEWVQHLSQSL-GGKGGGKPESAQASGTNYESVDE 953 Query: 888 AIAGVASF 895 + F Sbjct: 954 ILQLATKF 961 >gi|294053724|ref|YP_003547382.1| alanyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221] gi|293613057|gb|ADE53212.1| alanyl-tRNA synthetase [Coraliomargarita akajimensis DSM 45221] Length = 941 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 331/989 (33%), Positives = 493/989 (49%), Gaps = 161/989 (16%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA--VT 62 S IR +FL+FF+ H +PS+SL+P P L+FTN+GM F F G EK + Sbjct: 8 SEIRQSFLDFFKSKQHTTVPSASLMP-QSPGLLFTNAGMNQFVPYFLGTEKAPFDPPRAA 66 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQ 122 QKC+RAGGKHNDL++VG HHTFFEMLGN+SFG YFK+ AI+ +W+L+ + + + Sbjct: 67 DTQKCIRAGGKHNDLEDVGYDTYHHTFFEMLGNWSFGNYFKQEAIEWSWELIVETWGVPA 126 Query: 123 RRLYITVYDE--------DEEAFKLWKKI---SGLSAD-KIIRITTNDNFWSMAETGPCG 170 RLY TVY D+EA+ +W + +GL II DNFW M ETGPCG Sbjct: 127 NRLYATVYAPSEGDPSAFDQEAYDIWSVLFEKAGLDPKVHIINGNVKDNFWMMGETGPCG 186 Query: 171 PCSEIFFD-------QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 PCSE+ D QG+ + + + + IEIWNLVF+Q+ + LP Sbjct: 187 PCSELHVDLTPKGDSQGKLV-------NMDSDLCIEIWNLVFIQYNAEADGSFRDLPAKH 239 Query: 224 IDTGMGLERMATVLQ---------EKTNNYDIDLFKHLIQASEQVTGMKY---------- 264 +DTGMG ER +++Q EK NY D+F+ + + EQ++G Y Sbjct: 240 VDTGMGFERACSLIQNTKGFTDFSEKPTNYATDVFQPIFRTLEQLSGKTYKDIYPEAADC 299 Query: 265 -------EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGY 317 E + RVI DH+R+ SF +ADGIL N GR YVLRRI+RRA+ Y R LG+ Sbjct: 300 DKSKLSQEMKEAIAFRVIADHIRTLSFSLADGILLGNTGRNYVLRRILRRAVRYGRTLGF 359 Query: 318 T--EPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 + E + L+ L E GS +PEL + ++E L+ E+ F +TLDRGL + + + Sbjct: 360 SSGETFLPKLVDTLVEEFGSVFPELKERAKAVKENLQREEASFNETLDRGLAMFEDEAAK 419 Query: 376 LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLG 435 L+G+ AFKLYDT+G P+D+ Q +LCA +D+ +F + +E QR RARA Sbjct: 420 TKGS--LDGEFAFKLYDTYGFPIDLTQ-LLCAERGIEVDMETFEKHMEAQRERARAAR-- 474 Query: 436 LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI 495 T + + + +T+F G++ ED Sbjct: 475 ----TQQLVRAADIATEASTEFTGFE---------EDEST-------------------- 501 Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFV 555 +++E + V+ D+TPFY E GGQLGD G +G +T VQ+ + Sbjct: 502 ---AKVLELHTQDDALLVITDRTPFYVEMGGQLGDQGTLTVNGTTYPVTAVQQLSAA--R 556 Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615 H++ ++ + L +D RR + +H+ATHLLH AL ++ + +Q GS ++ Sbjct: 557 AHSLPTDAAVKVGDEVTLALDPTRRRPIEGHHTATHLLHWALHEVVSTDAAQQGSMVSRT 616 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV------TRIMNREDAIASGAAALLG 669 LRFD +S ++ +L +IE VN I PV T + +R+D G Sbjct: 617 RLRFDF-NSSALSQDQLDAIETKVNACIEAGDPVSWKEVPHTDVKDRKD-----VQQFFG 670 Query: 670 TKYNDRVRVVSV----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 KY D VRVV + E DG +S LCGGTHV +T +I L I SE +I +GIRRIEA Sbjct: 671 DKYGDLVRVVQIGGQPEQLDG--YSMELCGGTHVRNTKDIGLFKIKSEGAIASGIRRIEA 728 Query: 726 ITGQRA------------------RSHLMGQDEKLKSL-ASFLKVSQGN--VVGRVEEIW 764 + G A R+ L G ++KL++L A +K Q ++G + E Sbjct: 729 VCGTAAYDWTRSVVEKANIEREELRTKLEGINQKLEALGADSIKYPQFPHIMIGMLAEGN 788 Query: 765 EEYR----KLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI 820 E R K L H + + VE K A + + + + +++ S L+ + Sbjct: 789 FEQRNKVFKDTLAHVQGLKEATVEADKALKKAQAAGAAKMANAILAEQDLSGNLVLKAEG 848 Query: 821 QSGII--MLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAK--------------VLG 864 + ++ ++ G+ +++ A + +D +R + L +AK + Sbjct: 849 PAALLQELINGLKQQQFAGAAFFIVDD-GERLHLGALCGETAKGNGLMAGKLIQQLAPIA 907 Query: 865 GGGGGGRPHMAQSGGPNGNKADQAIAGVA 893 GG GGG+P MA+ P +KAD +AG A Sbjct: 908 GGKGGGKPDMARGAAPERDKAD-TLAGEA 935 >gi|50545890|ref|XP_500483.1| YALI0B04180p [Yarrowia lipolytica] gi|49646349|emb|CAG82710.1| YALI0B04180p [Yarrowia lipolytica] Length = 960 Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust. Identities = 314/965 (32%), Positives = 486/965 (50%), Gaps = 103/965 (10%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV----- 57 + +R TFL++F +K H +PSSS+IP +DPTL+F N+GM +K IF G P Sbjct: 10 ATKVRKTFLDYFGEKRAHSFVPSSSVIPYDDPTLLFANAGMNQYKPIFLGTCDPSSPLSK 69 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VGR + HHTFFEMLGN+SFG YFK A AW+LLT+ Sbjct: 70 LNRAANSQKCIRAGGKHNDLDDVGRDSYHHTFFEMLGNWSFGDYFKAEACAWAWELLTQV 129 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + LD RLY++ + D+ EA ++W + G++ D I+ + DNFW M + GPC Sbjct: 130 YGLDADRLYVSYFGGDDKLGLQPDLEAKQIWMDL-GVAEDHILPGDSADNFWEMGDQGPC 188 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ I GG + + +EIWN+VF+Q+ ++ + LP IDT Sbjct: 189 GPCSEIHYDR---IGGGRNARDLVNMDDPNVLEIWNIVFIQYNREADKSLKPLPAKHIDT 245 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVD 277 GMG ER+ +VLQ+K++NYD D+F + +++TG + Y G + I +RV+ D Sbjct: 246 GMGFERLVSVLQDKSSNYDTDVFTPIFAKIQELTGARDYAGKFGAEDADGIDTAYRVVAD 305 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMG 334 H+R+ +F +ADG +P N+GRGYVLRRI+RR + R + P+ L P L ++ Sbjct: 306 HVRTLTFALADGGVPNNDGRGYVLRRILRRGARFVRK-KFDVPIGSFFSQLAPTLIEQVN 364 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYD 392 +PEL + I E L E++ F +TLDRG L + + +L G ++LYD Sbjct: 365 EIFPELSKRTEDIFEILNDEEQSFSRTLDRGEKLFEQYAADAKANSKTVLAGKDVWRLYD 424 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P+D+ + + GL ID +F++A +E ++ K+ Sbjct: 425 TYGFPVDLTRIMAEEAGL-DIDEAAFDKAKQESLEASKGG----------------KKTA 467 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV--SGQK 510 G Q + D+ ++ K D + +S + G ++V S + Sbjct: 468 GGVQLVKLDVHALAELEKNDAVPKTDDQAKFTESNLSDAKVVAIYNGTGFVDSVDESAGQ 527 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 V ++ D+T YAE+GGQ DTG + DG + +VQ A G +H G L+ Sbjct: 528 VGLLLDKTCMYAESGGQEYDTGKIVIDGQTEFDVNNVQVYA-GYVLHTGNFNYGSLKIGD 586 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 + + D R L NH+ TH+L++AL LG + Q GS + + LRFD +H +T Sbjct: 587 VVNVGFDTARRTPLKNNHTGTHVLNYALKETLGDTIDQKGSLVASEKLRFDFSHKAGLTP 646 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR----------- 677 AE+ +ED N I +NL V + ++ A +G A+ G Y D VR Sbjct: 647 AEVAKVEDISNAYITKNLAVYAKSVDLTTAKKINGVRAVFGETYPDPVRVVSVGVPVEDL 706 Query: 678 VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS--HL 735 + + + +S CGGTHV TGEI L I+ ES I GIRRI A+TG+ A L Sbjct: 707 IANPDDAKWAEYSVEFCGGTHVGKTGEIKHLVIIEESGIAKGIRRIVAVTGKEAADVQKL 766 Query: 736 MGQ-DEKLKSLAS----FLKVSQGNVVGRVE------------EIWEEYRKLQ-LIHAKR 777 + DE+L LA+ K +G VE + E++ K+Q I Sbjct: 767 AAEFDERLDKLAAQPLGADKEQAAKAIG-VELKKLSVSTTSKLALQEKFNKIQKTITDGI 825 Query: 778 KLQLNVEDLSCHKIADVNF-----MSHIISEV-----DSKELKSVMDALQKKIQ-SGIIM 826 K +L E + + F +++++ V +SK L ++ ++ K+ + + Sbjct: 826 KAKLKAESKASTDLVSSYFEKNPEATYLVAHVPDISANSKALSETINHVKSKLPGKSVYL 885 Query: 827 LVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 G E K + + E + ++ A + ++A ++G G GG+ Q G N +K Sbjct: 886 FAGSPAEGKVAHACFIDESVSNKGLTAQQMGAIAAGLVG-GRSGGKGPTIQGSGDNADKI 944 Query: 886 DQAIA 890 A++ Sbjct: 945 ADAVS 949 >gi|195033960|ref|XP_001988798.1| GH11356 [Drosophila grimshawi] gi|193904798|gb|EDW03665.1| GH11356 [Drosophila grimshawi] Length = 967 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 315/964 (32%), Positives = 484/964 (50%), Gaps = 98/964 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP---VYQAVTT 63 +R +L+FF++ H + SSS IP +DPTL+FTN+GM FK IF G P + + V T Sbjct: 9 VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFTNAGMNQFKPIFLGTADPNSEMSKWVRT 68 Query: 64 V--QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT+ L Sbjct: 69 VNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTERLRLP 128 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + D E + W + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDAASGLQPDLECKQFWMDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + +++ +EIWNLVF+QF +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NQDDPDVLEIWNLVFIQFNRESDGSLKPLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L A + TG Y+G +++ + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGNPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFASLVSTVVDLLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE-ILNGDVAFKLYDTHGLPLDI 400 + I + + E+ +F KTL RG LL+ + LG + + GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIMDIINEEELQFLKTLTRGRNLLNRTIEKLGTSQTTIPGDVAWRLYDTYGFPVDL 424 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 Q + + L ID+ + A + + S G G+ ++I + + ++ Sbjct: 425 TQLMAEEKSLQ-IDMAGYEAA----KQNSYILSQGKGASKIDEITLDV---HAISELQEK 476 Query: 461 DLLRGSKFMKEDRKVLC--QKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 L K + + + + + + S IV A+ + + V+E SGQK +V D+T Sbjct: 477 GLPSTDDSFKYNYEAVSVERDAAYNFSECTSKIV-ALRFENKFVQEISSGQKAGIVLDKT 535 Query: 519 PFYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 FYAE+GGQ+ D G + D + D G +H +VE G L L L ID Sbjct: 536 NFYAESGGQIYDQGVLVKLNDEANEFLVDRVYNRGGYILHIGVVE-GNLAVGDELQLHID 594 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E Sbjct: 595 VERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNCKAAMTIDQVARTE 654 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------E 682 D++ QN+P+ + + A+A G ++ Y D VRV+S + Sbjct: 655 KLTRDMVYQNMPIYAK--ESQLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDRLESQPD 712 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ---D 739 E G S CGGTH+ ++G IM I SE +I GIRRI A+TG A + + Sbjct: 713 AETGEQTSVEFCGGTHLRNSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFE 772 Query: 740 EKLKSLASFLKVSQGN-----VVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS------- 787 +++ L + ++ Q V + E+ E+ + H K+ N+ L Sbjct: 773 QEISQLQATIEADQSGKESKMYVKLIVELTEQISHATIPHVKKDEMRNLLKLLKKSLDDK 832 Query: 788 -------------------CHKIADVNFMSHIISEV-DSKELKSVMDALQKKIQSGIIML 827 C + H + ++K L + + ++ ++ M Sbjct: 833 ERALRAAVSVTVVERTKALCEAEPQAKVLVHQLEAYNNTKALDAALKQVRLQLPEAAAMF 892 Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 V + + KK L V + +++ A + + + +L GG GGG+ AQ+ G N + Sbjct: 893 VSVDADSKKIFCLCSVPKAAVEKGLKANEWVQHVSSIL-GGKGGGKAESAQASGSNFERV 951 Query: 886 DQAI 889 D+ + Sbjct: 952 DEIV 955 >gi|125987341|ref|XP_001357433.1| GA12250 [Drosophila pseudoobscura pseudoobscura] gi|54645764|gb|EAL34502.1| GA12250 [Drosophila pseudoobscura pseudoobscura] Length = 966 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 318/969 (32%), Positives = 488/969 (50%), Gaps = 97/969 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +L FF++ H + SSS IP +DPTL+F N+GM +K IF G P + V Sbjct: 9 VRDAYLGFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQYKPIFLGTADPNSEMSKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT L Sbjct: 69 CNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWEFLTNRLHLP 128 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + DE E +LW + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDEASGLEPDLECKQLWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L +A + TG Y+G +++ + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFEAIQAGTGAPAYQGRVGADDVDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFGTLVNTVVDLLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I + + E+ +F KTL RG LL+ + LG I+ GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGSQSIIPGDVAWRLYDTYGFPVDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + + L ID+ + A + + S G G+ E+I + + +Q Sbjct: 425 QLMAEEKSLE-IDMAGYEAA----KQNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476 Query: 462 LLRGSKFMKEDRKVLCQK--PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + + K + + ++ + S IV A+ + + V E +GQK +V D+T Sbjct: 477 VPPTNDSFKYKYEAVSEERDSAYNYQECTSKIV-ALRFENQFVNEISNGQKAGIVLDKTN 535 Query: 520 FYAEAGGQLGDTGCAI--GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE+GGQ+ D G + D + D G +H +VE G L+ L L ID Sbjct: 536 FYAESGGQIFDQGALVKLNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELQLHIDE 594 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E Sbjct: 595 ERRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNTKAAMTIEQVAKTEQ 654 Query: 638 NVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSV-----------EY 683 D++ +N+P+ + + A+A G ++ Y D VRV+S + Sbjct: 655 LTKDMVYKNVPIYAK--ESKLALAKRIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPDA 712 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-----RSHLMGQ 738 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A +S Q Sbjct: 713 EAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKAIKKSEAFEQ 772 Query: 739 D-EKLKSLASFLKVSQGNV--VGRVEEIWEEYRKLQLIHAKR----------KLQLNVED 785 + KLK+ K + + V + E+ E+ + + K+ K L+ ++ Sbjct: 773 EIVKLKATIDADKSGKDSKSHVKEIVELTEQISHATVPYVKKDEMRNLLKGLKKTLDDKE 832 Query: 786 LSCHKIADVNFMSH-------------IISEVDSKELKSVMDALQKKIQSGI----IMLV 828 S VN + ++ ++++ +DA K++++ + M Sbjct: 833 RSLRAAVSVNVVERAKELCEANPGANVLVQQLEAFNNTKALDAALKQVRTQLPDAAAMFF 892 Query: 829 GISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKAD 886 + + KK L V + +++ A + + + L GG GGG+P AQ+ G N ++ + Sbjct: 893 SVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSPTL-GGKGGGKPESAQASGSNYDRVE 951 Query: 887 QAIAGVASF 895 + I F Sbjct: 952 EIIQLATKF 960 >gi|6176442|gb|AAF05593.1|AF188718_1 alanyl-tRNA synthetase [Drosophila melanogaster] Length = 966 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 314/970 (32%), Positives = 480/970 (49%), Gaps = 99/970 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT+ L Sbjct: 69 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALP 128 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + + D E ++W + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQ-VTGMKYEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L S++ + Y+G +++ + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLSMPSKRALVPQPYQGRVGADDVDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + + L ID+ + A + + S G G+ E+I + + +Q Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + + K + + + GV +S + A+ + + V E SGQK +V D+T F Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536 Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE+GGQ+ D G + D + D G +H +VE G L+ L L ID + Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHSATH L+H L +LG Q GS + P+ LRFD + S+ Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMPSSRCPRRSSL 655 Query: 639 VNDIIAQNLPVVTRIMNREDAIA-----SGAAALLGTKYNDRVRVVSV-----------E 682 +++ +N+P I +E +A G ++ Y D VRV+S + Sbjct: 656 TKEMVYKNVP----IYAKESKLALAKKIRGLRSVFDEVYPDPVRVISFGVPVDELEQNPD 711 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 E G S CGGTH+ +G IM I SE +I GIRRI A+TG A L + Sbjct: 712 SEAGEQTSVEFCGGTHLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFE 771 Query: 743 KSLASFLKVSQGNVVGR-----VEEIWE----------------EYRKL------QLIHA 775 + + + G+ V+EI E E R L L Sbjct: 772 QEIVRLKATIDNDKSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDK 831 Query: 776 KRKLQLNVEDLSCHK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIML 827 +R L+ V + + + N + ++ E ++K L + + ++ ++ M Sbjct: 832 ERALRAAVSVTVVERAKTLCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMF 891 Query: 828 VGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 + + + KK L V + +++ A + + + L GG GGG+P AQ+ G N K Sbjct: 892 LSVDADSKKIFCLSSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKV 950 Query: 886 DQAIAGVASF 895 D+ + + F Sbjct: 951 DEIVQLASKF 960 >gi|218662503|ref|ZP_03518433.1| alanyl-tRNA synthetase [Rhizobium etli IE4771] Length = 478 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/497 (46%), Positives = 330/497 (66%), Gaps = 39/497 (7%) Query: 380 EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG 439 ++L+G+ AFKLYDT+G PLD+ QD L AR + G+DI F A++ Q++ AR+H G G Sbjct: 1 DMLDGETAFKLYDTYGFPLDLTQDALRAREI-GVDISGFTDAMQRQKAEARSHWAGSGEQ 59 Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499 TE IWF LKEK+GAT+F+GYD T ++V+AIV+ G Sbjct: 60 ATETIWFELKEKHGATEFLGYD-----------------------TETAEAVVQAIVKDG 96 Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559 + EA +G KV++V QTPFY E+GGQ+GDTG D +++I+D QK+ EG+FVH Sbjct: 97 AVAAEAKAGDKVQIVVSQTPFYGESGGQMGDTGVISSDHGKIEISDTQKRGEGLFVHQGT 156 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 V G+++ ++VLT+D+ R +L NHSATHLLH AL +LG+HV+Q GS + P+ LRF Sbjct: 157 VIDGVVKDGDAVVLTVDHARRSRLRANHSATHLLHEALREVLGTHVAQKGSLVAPERLRF 216 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 DV+H KP+++ ELK +ED N+I+ QN PV TR+M+ +DAIA GA AL G KY D VRVV Sbjct: 217 DVSHPKPMSAEELKIVEDMANEIVLQNSPVTTRLMSVDDAIAEGAMALFGEKYGDEVRVV 276 Query: 680 SV-----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734 + + G +S LCGGTHVS+TG+I L+ ++ ES++ AG+RRIEA+TG+ AR + Sbjct: 277 GMGEGVRGAKAGKPYSIELCGGTHVSATGQIGLIRVLGESAVGAGVRRIEAVTGESAREY 336 Query: 735 LMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQL------NVEDL 786 L QDE++K+LA+ LKV G V+ RVE + +E RKL +L AKRKL + +V+ Sbjct: 337 LAEQDERVKALAASLKVQPGEVLSRVEAMMDERRKLEKELADAKRKLAMGGGQGGSVD-- 394 Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDL 846 + ++A V F+ IS VD K+LK + D + I SG++ LVG+S + KAS ++ VT DL Sbjct: 395 AVREVAGVKFLGKAISGVDPKDLKGLADDGKTSIGSGVVALVGVSDDGKASAVVAVTPDL 454 Query: 847 LDRFNAVDLARLSAKVL 863 ++R++AVDL R+++ L Sbjct: 455 VERYSAVDLVRIASAAL 471 >gi|320588479|gb|EFX00948.1| alanyl-tRNA synthetase [Grosmannia clavigera kw1407] Length = 1117 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 325/946 (34%), Positives = 494/946 (52%), Gaps = 96/946 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG---QEKPVY---QA 60 +R TFLE+F+K GH ++PSSS++P NDPTL+FTN+GM FK IF G + P+ +A Sbjct: 168 VRQTFLEYFEKKGHTIVPSSSVVPHNDPTLLFTNAGMNQFKPIFLGTVAKADPLSSLKRA 227 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V T QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+++WDLLT + L Sbjct: 228 VDT-QKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEMSWDLLTNVYGL 286 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 D RLY+T + + D EA LW + G+ D I+ DNFW M + GPCGPC Sbjct: 287 DPARLYVTYFEGNPAMGLEPDLEAKNLWLSV-GVPEDHILPGNMKDNFWEMGDQGPCGPC 345 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SE+ +D+ + GG SS ++ +E+WN VF+QF++Q + LP +DTGMG Sbjct: 346 SEVHYDK---VGGGRNASSLVNQDDPLVVEVWNNVFIQFDRQQDKSLKSLPAKHVDTGMG 402 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLR 280 ER+ + LQ+K +NY D+F L ++VTG KY +++ +RV+ DH+R Sbjct: 403 FERLVSALQDKISNYATDIFTPLFDRIQEVTGARPYTDKYGKDDVDGIDTAYRVVADHIR 462 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYP 338 +F +ADG +P N+GRGYV+RR++RR + YAR E +LPAL +MG +P Sbjct: 463 LLTFSMADGAVPNNDGRGYVVRRVLRRGVRYARKYFGAEIGSFFSQILPALVDQMGHQFP 522 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGL 396 E+ + + I+E L E+E F +TLDRG + + K + L+G ++LYDT G Sbjct: 523 EIAKKQKDIKEILDEEEEAFSRTLDRGERQFEKYAAATAKSGAKTLSGADVWRLYDTFGF 582 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P D+ Q + RGL+ I + A+ +R+R + S+ T K L A Sbjct: 583 PEDLTQLMAEERGLS---IDAEEVAVARERAREASKSVKEAVQTFAK----LNVHQIAEL 635 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 + ++R S K R L + ++L + VK ++ + + ++ D Sbjct: 636 ENEHKIVRPSSEAKYLRGDLHSR--VELIYTGTGFVK-------TTKDIPANTPLGILVD 686 Query: 517 QTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 +T FYAE+GGQ+ DTG I D ++ DVQ+ G VH+ +E G L + +++ Sbjct: 687 KTNFYAESGGQVADTGRIVIDDVAEFKVLDVQEYG-GYVVHNGYLEYGELSSGDNVICEY 745 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 + R + NH+ TH+L+HAL +LG V+Q GS + D LRFD +H ++ AE+K I Sbjct: 746 EELRRAPIRNNHTGTHVLNHALREVLGDDVNQKGSLVDQDKLRFDFSHKSAVSLAEIKKI 805 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR-----------VVSVEY 683 E+ N I +NL V + ++ A G A+ G Y D VR + + + Sbjct: 806 EELANANIQRNLKVFYKDVDLASAREIEGVRAVFGETYPDPVRVVSVGVDVDELLRTPKK 865 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG------QRARSHLMG 737 + +S CGGTHV TG I + +V ES I GIRRI A TG QR + Sbjct: 866 AEWRGYSVEFCGGTHVEQTGLIKDVVVVEESGIAKGIRRIVAYTGDAAHRVQREATQFQE 925 Query: 738 QDEKLKSLA------SFLKVSQGNVVGRV------EEIWEEYRKLQ-------LIHAKRK 778 + E ++ L + +K +Q ++ EE+ + K+Q K + Sbjct: 926 RIEAIEKLPFGPEKETEIKAAQHDLNQLAISALAKEELRTRFAKVQKDVLDELKKRQKAE 985 Query: 779 LQLNVEDLSCHKIADVN-----FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKE 833 L+ V ++ H N F+ H+ ++K + VM+ + K + + + G S Sbjct: 986 LKAAVGAVTDHFAKPDNKESKVFVGHLPISANAKAISEVMNHFKTKDKERSVYVFGGSPS 1045 Query: 834 KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + V L + A + + V+GG GG P SG Sbjct: 1046 EGVVHGVYVGTHLASKGVTAEQWSTAVSDVVGGKAGGKEPTRQGSG 1091 >gi|315046056|ref|XP_003172403.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893] gi|311342789|gb|EFR01992.1| alanyl-tRNA synthetase [Arthroderma gypseum CBS 118893] Length = 970 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 295/801 (36%), Positives = 431/801 (53%), Gaps = 87/801 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R TFL++F+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 23 VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAQLKRA 82 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD Sbjct: 83 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLD 142 Query: 122 QRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ +E EA +W+ + G+ D I+ DNFW M + GPCGPCS Sbjct: 143 PDRLYVTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCS 201 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + +++ +EIWN VF+Q+ ++ + LP +DTG+G Sbjct: 202 EIHYDR----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGY 257 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRS 281 ER+ ++LQ K++NYD D+F L A + +TG + Y GN +RV+ DHLR+ Sbjct: 258 ERLVSILQNKSSNYDTDVFSPLFAAIQNITGARPYTGNFGAQDVDGIDTAYRVVADHLRT 317 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE Sbjct: 318 LTFAITDGAAPNNEGRGYVVRRVLRRGVRYARKYMQVEIGSFFSKLVPALVEQMGDMFPE 377 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLD-----GVLSHLGKDEILNGDVAFKLYDTH 394 + + + + E L E+ F KTLDRG + + S GK L+G ++LYDT Sbjct: 378 IKRKQNDVMEILDEEEVSFAKTLDRGERQFETYAQQALDSGAGK---LHGADVWRLYDTF 434 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK----- 449 G P+D+ + + R L ID F EE R +A+ S G ++ + ++ Sbjct: 435 GFPVDLTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKAASDLLKLTVHTLSTL 489 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAV 506 EK G + +KF K + + +KAI E+++ + Sbjct: 490 EKNGVPK-----TNDDAKFGK---------------GNIVANIKAICHGKEVIDSTKDIP 529 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGIL 565 + +++ ++ D+T FYAE GGQ DTG + DG L + +VQ G +H ++ G Sbjct: 530 ADEQIGIILDKTNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYG-GYVLHTGFIKYGNF 588 Query: 566 RTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSK 625 S++ D R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H Sbjct: 589 SVNDSVIAEYDELRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKS 648 Query: 626 PITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE 684 I+ ++L+ IE D I QN V ++ + A +G A+ G Y D VRVVSV E Sbjct: 649 AISDSDLEKIESMSTDYIRQNCAVYSQEVPLSTAREITGVRAVFGETYPDPVRVVSVGVE 708 Query: 685 DGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 + S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 709 LDEILKNVKDPRWEAVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHE 768 Query: 734 HLMGQDEKLKSLASFLKVSQG 754 E + L F K+S G Sbjct: 769 VQRVAREFGERLNRFEKMSAG 789 >gi|327538393|gb|EGF25065.1| alanyl-tRNA synthetase [Rhodopirellula baltica WH47] Length = 945 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 272/779 (34%), Positives = 405/779 (51%), Gaps = 55/779 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R +L FF+ G PS L+P DP+++FT +GM FK+ F G+ K + TT QK Sbjct: 6 LREKYLAFFETKGCVRQPSDVLVPAWDPSVLFTPAGMNQFKDHFLGKVKLDFTRATTCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R G D+DNVGRT HHTFFEMLGNFSFG YFKE AI AW+ LT K + R Sbjct: 66 CLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKEEAIHWAWEFLTDKKWLGIPGER 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW--SMAETGP---CGPCSEIFFDQ 179 L +TVY +D+EAF +W GL +I R+ ++NFW S GP CGPCSEI++ Sbjct: 122 LTVTVYKDDDEAFGIWHDKIGLPTQRITRMDEDENFWPASAPSEGPDGVCGPCSEIYY-- 179 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237 E+G +EIWNLVF QF + + LP +IDTGMGLER A+VL Sbjct: 180 ----------QLEDGSD-VEIWNLVFTQFNRVGTPPDNLHPLPSKNIDTGMGLERTASVL 228 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N+ ID +++A+ +V G+K YE +N R I DH R+S F + + + P + Sbjct: 229 QGVPTNFHIDSLFPIVEAASEVCGVKYEYESDNGRRLRRITDHARASVFAVHENVYPGPK 288 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 V+RR++RRA+ + EP + L+ A+ +AYPEL Q + E + SE+ Sbjct: 289 DARSVIRRLIRRAVLDGYQMNLREPFLYKLVEAVADASKAAYPELGQTTQRVSEAIESEE 348 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 + F T+D G+ + + + + ++ G A L T+G+P +++Q + + Sbjct: 349 KAFFSTIDGGMKRIHRLFEEMNDEASVMVPGAEAADLLTTYGVPPELVQTLAAEQNFT-F 407 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F +A+++ + + +G E +LKE T F+GY+ + +K Sbjct: 408 DWSGFREAMDKHADESDGGQRVLFQTGPLE----TLKEALRETPFVGYEQTEATAVVK-- 461 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 ++ ++ + + G+ V + VV D +PFY E+GGQ+GD G Sbjct: 462 -GIITGD--GKGKGDDGQLLSHLDRPGDAV--------LRVVLDHSPFYGESGGQVGDIG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D ++ D Q+ A + VHH + RG + + D +NR L+ HSATH+ Sbjct: 511 VISNDNFEFEVIDTQRHA-SLIVHHGRLIRGKINEGETCTAKFDVENRTALARAHSATHI 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LHHAL T +G H Q GS + PD LRFD T+ K I L IE +V ++++ + Sbjct: 570 LHHALHTHVGRHAEQQGSKVEPDRLRFDFTNPKAIDDETLVKIEQDVLSMVSKGDEIRWD 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 ++ DA +GA L G KY D R+VS+ G S LCGGTH+++T ++ +V Sbjct: 630 TVSLADAREAGAMMLFGEKYPDPCRMVSM-----GTFSRELCGGTHLTNTKQVGSFEVVV 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E S+ G RRIEA+TG+RA+ H L +A L + EE R+L+ Sbjct: 685 EESVSTGTRRIEALTGERAKEHREQTQALLNEVAGKLNCDASVAAAATVALIEEVRRLK 743 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 6/153 (3%) Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCH--KIADVNFM 797 ++ L L V+ +V+ R++ + + KL QL +++ +DL K+ D + Sbjct: 782 VRGLTRRLNVAITDVLSRLDSLLADRSKLVEQLKQVTAGGKISADDLIADGTKVGDTLLI 841 Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLA 856 + ++ +D ++KK + +L+ + K ++ ++ DL+DR A D Sbjct: 842 VAETPGANPNIMRGWIDQIRKKSDTPTAVLLASAMNDKVMLVGGLSRDLVDRGLKAGDWV 901 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +AKV+GG GGG RP MAQ+GG + +K +A+ Sbjct: 902 GAAAKVVGGSGGG-RPDMAQAGGKDASKLPEAL 933 >gi|32475431|ref|NP_868425.1| alanyl-tRNA synthetase [Rhodopirellula baltica SH 1] gi|41018176|sp|Q7UFH9|SYA_RHOBA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|32445972|emb|CAD78703.1| alanyl-tRNA synthetase [Rhodopirellula baltica SH 1] Length = 945 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 273/779 (35%), Positives = 404/779 (51%), Gaps = 55/779 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R +L FF+ G PS L+P DP+++FT +GM FK+ F G+ K + TT QK Sbjct: 6 LREKYLAFFETKGCVRQPSDVLVPAWDPSVLFTPAGMNQFKDHFLGKVKLDFTRATTCQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R G D+DNVGRT HHTFFEMLGNFSFG YFKE AI AW+ LT K + R Sbjct: 66 CLRTG----DIDNVGRTAFHHTFFEMLGNFSFGDYFKEEAIHWAWEFLTDKKWLGIPGER 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFW--SMAETGP---CGPCSEIFFDQ 179 L +TVY +D+EAF +W GL +I R+ ++NFW S GP CGPCSEI++ Sbjct: 122 LTVTVYKDDDEAFGIWHDKIGLPTQRISRMDEDENFWPASAPSEGPDGVCGPCSEIYY-- 179 Query: 180 GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFI--LPKMSIDTGMGLERMATVL 237 E+G +EIWNLVF QF + + LP +IDTGMGLER A+VL Sbjct: 180 ----------QLEDGSD-VEIWNLVFTQFNRVGTPPDNLHPLPSKNIDTGMGLERTASVL 228 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMK--YEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 Q N+ ID +++A+ +V G+K YE +N R I DH R+S F + + + P + Sbjct: 229 QGVPTNFHIDSLFPIVEAASEVCGVKYEYESDNGRRLRRITDHARASVFAVHENVYPGPK 288 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 V+RR++RRA+ + EP + L+ A+ +AYPEL Q + E + SE+ Sbjct: 289 DARSVIRRLIRRAVLDGYQMNLREPFLYKLVEAVADASKAAYPELGQTTQRVSEAIESEE 348 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 + F T+D G+ + + + + ++ G A L T+G+P +++Q + + Sbjct: 349 KAFFSTIDGGMKRIHRLFEEMNDEASVMVPGAEAADLLTTYGVPPELVQTLAAEQNFT-F 407 Query: 414 DIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F +A+++ + + +G E +LKE T F+GY+ + +K Sbjct: 408 DWSGFREAMDKHADESDGGQRVLFQTGPLE----TLKEALRETPFVGYEQTEATAVVKG- 462 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 I ++ + E+AV + +V D +PFY E+GGQ+GD G Sbjct: 463 --------IITGDGKGKGDDGQLLSHLDRPEDAV----LRLVLDHSPFYGESGGQVGDIG 510 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 D ++ D Q+ A + VHH + RG + + +D +NR L+ HSATH+ Sbjct: 511 VISNDNFEFEVIDTQRHA-SMIVHHGRLIRGKINEGETCTAKVDVENRTALARAHSATHI 569 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 LHHAL T +G H Q GS + PD LRFD T+ K I L IE +V ++ + + Sbjct: 570 LHHALHTHVGRHAEQQGSKVEPDRLRFDFTNPKAIDDETLVKIEQDVLGMVGKGDEIRWD 629 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 ++ DA +GA L G KY D R+VS+ G S LCGGTH+++T ++ +V Sbjct: 630 TVSLADAREAGAMMLFGEKYPDPCRMVSM-----GTFSRELCGGTHLTNTKQVGSFEVVV 684 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ 771 E S+ G RRIEA+TG+RA+ H L +A L + EE R+L+ Sbjct: 685 EESVSTGTRRIEALTGERAKEHREQTQALLNEVAGKLNCDASVAAAATVALIEEVRRLK 743 Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 6/153 (3%) Query: 742 LKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCH--KIADVNFM 797 ++ L L V+ +V+ R++ + + KL QL +++ +DL K+ D + Sbjct: 782 VRGLTRRLNVAITDVLSRLDSLLADRSKLVEQLKQVTAGGKISADDLIADGTKVGDTLLI 841 Query: 798 SHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLA 856 + ++ +D ++KK + +L+ S K ++ ++ DL+DR A D Sbjct: 842 VAETPGANPNIMRGWIDQIRKKSDTPTAVLLASSMNDKVMLVGGLSRDLVDRGLKAGDWV 901 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 +AKV+GG GGG RP MAQ+GG + +K +A+ Sbjct: 902 GAAAKVVGGSGGG-RPDMAQAGGKDASKLPEAL 933 >gi|156371401|ref|XP_001628752.1| predicted protein [Nematostella vectensis] gi|156215737|gb|EDO36689.1| predicted protein [Nematostella vectensis] Length = 961 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 317/981 (32%), Positives = 491/981 (50%), Gaps = 128/981 (13%) Query: 7 IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQ 59 IR F++FF +K+ H +PSSS+IP DPTL+F N+GM +K+IF G P + + Sbjct: 10 IRRKFIDFFVEKHNHTFVPSSSVIPHEDPTLLFANAGMNQYKSIFLGTVDPNSDMSKLKR 69 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 AV + QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG +FK+ AI AW+ LT+ Sbjct: 70 AVNS-QKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDFFKKGAIDFAWEFLTEVLK 128 Query: 120 LDQRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + + RLY+T + + D E W GL +++ +DNFW M +TGPCGPCS Sbjct: 129 VPKERLYVTYFGGCDGVECDNETKDYWIG-KGLDPSRVLPFGMSDNFWEMGDTGPCGPCS 187 Query: 174 EIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG + + +EIWNLVF+QF ++N LP +DTGMGL Sbjct: 188 EIHYDR----IGGRDAKALVNMDDPTVLEIWNLVFIQFNRENDGTLKTLPSQHVDTGMGL 243 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRS 281 ER+ +++Q K +NYD DLF Q TG++ G + + +RV+ DH+R+ Sbjct: 244 ERLVSIIQGKMSNYDTDLFTPFFDKIHQATGVQPYGGQVGLADQNGIDMAYRVVADHIRT 303 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPEL 340 + ++DG P N GRGYVLRRI+RR + Y+ L + L+ + +G +PEL Sbjct: 304 LTVAMSDGGKPDNVGRGYVLRRILRRCIRYSIEKLNASPGFTASLVSVVIDTLGEFFPEL 363 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDI 400 + + + + E+ +F KTL RG L + S + D + GDVA++LYDT+G P+D+ Sbjct: 364 NKDPQQVMDVINEEEVQFLKTLARGRRLFERTASKI-TDGTIPGDVAWRLYDTYGFPVDL 422 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + + RGL +D+ + EE + RA+ + G S + + I + Sbjct: 423 TELMAEERGLR-VDM----EKYEEAKRRAQEIARGKDSASDDAITLDV------------ 465 Query: 461 DLLRGSKFMKEDRKVLCQKPPIDLT--------------NGVSSIVKAIVQQGEIVEEAV 506 + + + V+ P IDL VS +KA++ + E V E Sbjct: 466 ------HLLDKLQNVMNLPPTIDLPKYSYSSDALGSYVFQPVSGTIKALLHEKEFVNEVP 519 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVHHAIVERG 563 G+ ++ DQT FYAE GGQ+ D G +G + ++ +VQ G +V H G Sbjct: 520 GGEHCGIILDQTSFYAEQGGQIYDEGFMTKEGDEDVEFRVINVQ--VHGGYVLHVGALEG 577 Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623 +R ++ ID RRQ NH+ATH+L+ AL LG Q GS + P+ LRFD T Sbjct: 578 AIRVGDTMNCLIDEDRRRQCMNNHTATHILNFALRRTLG-EADQRGSLVAPNRLRFDFTA 636 Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDRVRVVSV- 681 +T ++KS E +I+ +LPV + + A G A+ Y D VRVVS+ Sbjct: 637 KGAMTPEQVKSTELFSKEIVTSDLPVFAKEVALAQAKDVQGLRAIFDEVYPDPVRVVSIG 696 Query: 682 --------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---R 730 + G +S CGGTH+ + + +VSE +I GIRRI A+TG + Sbjct: 697 ASFDELQPNPQAGYKYSIEFCGGTHLQRSSHMETFVLVSEEAISKGIRRIVALTGPEGLK 756 Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL------QLIHAKRKLQLNVE 784 A H + +++ + ++ N+ RV+E +E +L +I A +K ++ Sbjct: 757 AEKHCEALEARVEKIRKEVEAESKNL--RVKEAGQEITRLIEDINAAVISAWKKEEMRQT 814 Query: 785 DLSCHKIAD-------VNFMSH-----------------IISEVDSKELKSVMDALQKKI 820 KI D M+ ++ D+ + V+DA K+ Sbjct: 815 LKKVKKIVDNASKAMQAALMTSAADKAKAMITAEPDRTVVVELFDAGSNQKVLDAAMKQF 874 Query: 821 QS----GIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHM 874 ++ ++L+ + +E KK L V +D+ + A + A +L GG GG+ Sbjct: 875 KNLSPLTAVLLLSVDQENKKIICLSQVPKDVTKKGLKADEWTGAIADIL-GGKSGGKEMS 933 Query: 875 AQSGGPNGNKADQAIAGVASF 895 AQ+ GPN D+A++ F Sbjct: 934 AQASGPNVGSIDKALSEAKQF 954 >gi|328874134|gb|EGG22500.1| alanyl-tRNA synthetase [Dictyostelium fasciculatum] Length = 961 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 313/986 (31%), Positives = 494/986 (50%), Gaps = 116/986 (11%) Query: 1 MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP--- 56 M++V+ IR TF++FF +K H +PSSS+IP +DPTL+F N+GM FK IF GQ P Sbjct: 1 MTSVNEIRKTFIDFFSEKCQHTFVPSSSVIPHDDPTLLFANAGMNQFKPIFLGQADPRSE 60 Query: 57 ---VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDL 113 + +AV + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI AW+L Sbjct: 61 QAKLKRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAITWAWEL 119 Query: 114 LTKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAE 165 LT + LD+ RLY + + + D EA LW + L A++++ +NFW M + Sbjct: 120 LTVVYKLDKERLYASYFGGDAAKGLEADTEARDLW--LQFLPAERVLPFGMKENFWEMGD 177 Query: 166 TGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 TGPCGPCSEI FD+ E G + + IEIWN VF+Q+ ++ + LP +D Sbjct: 178 TGPCGPCSEIHFDKVEGRKGAAALVNADDPTLIEIWNNVFIQYNREADKSLRPLPNKHVD 237 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN----------HRVI 275 TGMGLER+ +++Q NYD D+F + ++VTG + V +RVI Sbjct: 238 TGMGLERLTSIIQNVGTNYDTDIFMPIFAEIQKVTGYPHPYGGKVGSDDPEQVDMAYRVI 297 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMG 334 DH+R+ SF IADG +P++EGRG VLRRI+RRA+ Y + L L+ + G Sbjct: 298 ADHIRTLSFSIADGAVPSSEGRGQVLRRILRRAVRYGKQKLNAPSGFFAKLVDIVVQNFG 357 Query: 335 SAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYD 392 +PEL I L E++ F + LDRG+V D ++ + + ++ A+ LY Sbjct: 358 DFFPELRNRPQHIVSVLEREEKMFARALDRGIVEFDRMVDKVKQQGSKVFPASNAWYLYS 417 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 + G P+D+ + ++ +GL +D+ + + +E R R L S TE Sbjct: 418 SFGFPIDLTKLMVDEKGLE-LDMDGYQKLADEDAERGR---LRQRSKKTEM--------- 464 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDL----TNGVSSIVKAIVQQGEIVEEAVSG 508 Q +L+G KP ID + ++VKAI V S Sbjct: 465 -NMQAEPISILQGDGV----------KPTIDSHKYEQKEIETVVKAIYDGKVFVNSLEST 513 Query: 509 QKVE-----VVFDQTPFYAEAGGQLGDTG---CAIGDGIRLQITDVQKKAEGIFVH--HA 558 +V + T FY E GGQ+ D G + ++D K G VH + Sbjct: 514 DTTRNTVYGIVLESTNFYPEQGGQIYDIGNINSVVDQTTIFNVSDC-KVFGGYVVHIGYI 572 Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 + ++ + LT+DY R + NH++TH+++ AL +LG +V Q GS + LR Sbjct: 573 TADAAAIKVGDKVELTVDYTRRSPIMSNHTSTHMINFALRNVLGDNVEQRGSLVDDSKLR 632 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVR 677 FD ++ + +T E+ ++ VND+IA+ LPV + ++ A +G A+ G Y D VR Sbjct: 633 FDFSNDRGMTRQEIIKVDQIVNDLIAKELPVSCKEVDLARAKTINGLRAVFGEVYPDPVR 692 Query: 678 VVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 VVSV + +S CGGTH++++ + I SE ++ AGIRR+ A+ Sbjct: 693 VVSVGKSVDELLANPTNPEWTQYSIEFCGGTHINNSKDAEYFAITSEEALAAGIRRVVAV 752 Query: 727 TGQRAR----------------SHLMGQDEK--LKSLASFLKVSQGN-----------VV 757 TG A + G++ K + +L + L QG ++ Sbjct: 753 TGSDATVVFENNKKLQARFQEATKFTGKELKDAIPTLTALLNEHQGKISASKKFELVEIL 812 Query: 758 GRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--FMSHIISEVDSKELKSVMDA 815 ++E+ ++ K + + ++ Q+ V+ +S + + ++ I + + + + + + Sbjct: 813 SSIQELAKKQYKEEEANLIKEAQVLVDQISNQLVESKSPIYVGTINAGLSNTLMSDSIKS 872 Query: 816 LQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGG--GGGGGRP 872 +QKK ++L+ +EK K V+ +V + + KV G GGG+P Sbjct: 873 IQKKCPDTSVLLISKDEEKGKICVISIVPKGSTAETKGLKANDWVVKVSAALGGKGGGKP 932 Query: 873 HMAQSGGPNGNKADQAIAGVASFLKK 898 +AQ G + K D+A+ SF +K Sbjct: 933 DVAQGAGTDIAKIDEALEFAKSFAQK 958 >gi|291228549|ref|XP_002734240.1| PREDICTED: alanyl-tRNA synthetase-like [Saccoglossus kowalevskii] Length = 1016 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 305/922 (33%), Positives = 463/922 (50%), Gaps = 106/922 (11%) Query: 7 IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60 IR F+++F +K H +PSSS+IP D TL+FTN+GM FK+IF G P Y+ Sbjct: 56 IRRKFIDYFKEKQSHLFVPSSSVIPREDKTLLFTNAGMNQFKSIFQGAVDPSSPIVKYRR 115 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ ++AWDLL + L Sbjct: 116 VVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKETCEMAWDLLINVYGL 175 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 RLY+T + D E +WK I G++ D+I+ N+NFW M GPCG C Sbjct: 176 SSNRLYVTYFGGNQQLGLSPDIECRNIWKNI-GVAEDRILPYGMNENFWEMGTIGPCGMC 234 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI +D+ G +S ++ +E+WNLVF+Q+ ++ LP+ +IDTGMG Sbjct: 235 SEIHYDR----IGNRNATSLINKDDPSVLELWNLVFIQYNREEDGCLSKLPQHNIDTGMG 290 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG--------NNIVNHRVIVDHLR 280 LER+ +++Q +NYD DLF+ LIQ ++ T M Y+G N + +RV+ DH+R Sbjct: 291 LERLVSIIQGVDSNYDTDLFQPLIQEIQKCTSMPPYQGLVGDSDNENIDMAYRVLADHIR 350 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + I DG P N + Y+++R++RRA+ YA L + L+P + +G AYPE Sbjct: 351 TLTIAITDGARPGNFKQSYIIKRLIRRAVRYATEKLNASPGQFASLVPIVVDTLGDAYPE 410 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L+ + + + E++ F K L +G LD +S L + IL GD+A+K+YD G P+D Sbjct: 411 LLTNPQQVIDVINREEDLFLKQLKKGRKFLDKKISKLKEPRILPGDIAWKMYDGFGFPID 470 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + ++C +D+ + + E + H + G ++ + Sbjct: 471 LTI-LMCNEKGVSVDMEGYEEVKE------KTHQITSQGGIKNQLEYGFDTN-------A 516 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ----GEIVEEAVSGQKVEVVF 515 L+ D D N ++ A + G+ VE Q +V+ Sbjct: 517 LQQLKHQNISTTDDSYKYSYECDDDGNYEFEVITAKITSLRVGGQFVESVEPDQSCDVIL 576 Query: 516 DQTPFYAEAGGQLGDTG--CAIGD---GIRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 QT FYAE GGQL D G +GD I ++ +VQ G +V H+ + L Sbjct: 577 HQTCFYAEQGGQLWDDGYFTKLGDEAQQIVFEVDNVQ--IYGGYVVHSGTTKKTLSVGEQ 634 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 L L I+ + R L NH+A H+L+ +L + G + Q GS + PD LRFD T+ +TS Sbjct: 635 LKLHINEERRLGLMRNHTAAHILNWSLRHLHGDGIEQRGSLVAPDRLRFDFTYEDSLTSL 694 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-------- 681 ++K I+D VN++I Q PV ++ + ++A G A+ G Y D V+VVSV Sbjct: 695 QVKEIQDQVNEVIEQYTPVDSQEVELDEAKQIEGLRAVFGEVYPDPVQVVSVGIPVTGLL 754 Query: 682 --EYEDGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR------ 732 + GG S LCGGTHV T I L I+ E + +G+RRI AITG Sbjct: 755 TNPFGPGGFMSPVELCGGTHVHMTEHIGKLVIIDEGKVSSGVRRITAITGSDGWEADRKA 814 Query: 733 -------SHLMGQ-DEKLKSLASFLKV--SQGN----VVG-------RVEEIWEEYRKLQ 771 S L Q +E +++L L+V + N VVG R E+ EE KL+ Sbjct: 815 DDLLVKVSELKKQIEESIENLTPSLRVLFDEANNLLEVVGASPIPLWRSRELKEELFKLK 874 Query: 772 -----LIHAKRKLQL-----NVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQ 821 ++K+ + D++ ++ + I + ++K L +MD + Sbjct: 875 EDIKSFDKKRKKMAVKEAISQAADMANDRLDRPFIVKEIHTGSNTKALMQIMDIFKNTTP 934 Query: 822 SGIIMLVGISKEKKASVLIVVT 843 S I+L G+ K+ + T Sbjct: 935 SSAILLYGVDKDDCTITCVCYT 956 >gi|296420542|ref|XP_002839828.1| hypothetical protein [Tuber melanosporum Mel28] gi|295636034|emb|CAZ84019.1| unnamed protein product [Tuber melanosporum] Length = 959 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 313/946 (33%), Positives = 484/946 (51%), Gaps = 137/946 (14%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQ 59 S +R TF+++F+ NGH +PSSS++P +DPTL+F N+GM +K+IF G P + Sbjct: 13 SLVRKTFIDYFKNNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPSSDFASLK 72 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ A++ +W+LLT+ + Sbjct: 73 RAANSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAVEYSWELLTEIYG 132 Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 LD RLY+T + + D E +LW+ + G++ + I+ DNFW M + GPCGP Sbjct: 133 LDPDRLYVTYFEGNKERGLEPDLETQELWRAV-GVADNHILPGNMKDNFWEMGDQGPCGP 191 Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSE+ +D GG S + + IEIWN VF+Q+ ++ LP +DTGM Sbjct: 192 CSEVHYDH----IGGRNASHLVNMDDPNVIEIWNNVFIQYNREPDHSLRSLPNKHVDTGM 247 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVT-----GMKYEGNNI----VNHRVIVDHL 279 G ER+ +VLQ+K++NYD D+F L Q +++T G K+ ++ +RVI DH+ Sbjct: 248 GFERLVSVLQDKSSNYDTDVFSPLFQKIQEITKARPYGGKFGAEDVDGIDTAYRVIADHV 307 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMGSA 336 R+ +F IADG +P NEGRGYV+RR++RR YAR + P+ ++P L ++G Sbjct: 308 RTLTFAIADGGVPNNEGRGYVVRRVLRRGARYARRY-FQAPIGEFFSKIVPTLVLQLGDV 366 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD---EILNGDVAFKLYDT 393 +PE+ + + ++E L E+E F +TLDRG + D V S + ++L G ++LYDT Sbjct: 367 FPEIKKKESDVKEILNEEEESFSRTLDRGERMFD-VFSKRATEHNSKVLKGSDVWRLYDT 425 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA--------------HSLGLGSG 439 G P+D+ + + GL I+ F +A E + ++A H LG Sbjct: 426 FGFPVDLTRIMAEENGLE-INEEEFERAKAESKEASKARKSSGDVELLKLGVHDLGRLEQ 484 Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499 E K+G G+ + + C K T +S Sbjct: 485 MAEVPKTDDVYKFGRGNITGHIM-----------AIYCDKSFRSSTANISRYT------- 526 Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHA 558 ++ ++ D+T FYAE GGQ DTG + DG L + +VQ G +H Sbjct: 527 ----------QLGLILDKTNFYAEQGGQEYDTGKILIDGEAELDVQNVQVYG-GYVLHTG 575 Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 ++ G L ++ D R + NH+ TH+L++AL +LG + Q GS + + LR Sbjct: 576 YIKYGTLSVGDDVICEYDELRRWPIRNNHTGTHVLNYALREVLGDGIEQKGSLVAAEKLR 635 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS------GAAALLGTKY 672 FD +H +T AEL+ IE + I QNL V + ED S G A+ G Y Sbjct: 636 FDFSHKCGVTDAELEMIEKISTEYIRQNLEVYS-----EDVPLSIAREIEGVRAVFGETY 690 Query: 673 NDRVRVVS-----------VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIR 721 D VRVVS V+ + S CGGTHV T +I L I+ E+ I GIR Sbjct: 691 PDPVRVVSVGVPIEELTRDVKNKQWRKVSIEFCGGTHVQKTDDIKDLIILEENGIAKGIR 750 Query: 722 RIEAITGQRA------------RSHLMG-------QDEKLKSLASFLKVSQGNVVGRVEE 762 RI A+TG A R + +G ++ ++KS+ + L + V +V + Sbjct: 751 RIVAVTGNDAGKVQKIASQFEERINALGKLPAGPRKEAEIKSVQADLNSLVISAVKKV-Q 809 Query: 763 IWEEYRKL--QLI---HAKRKLQLN--VEDLSCHKIADVN---FMSHIISEVDSKELKSV 812 + +++ K+ QL+ AK+K +L VE ++ H + + F+S + +SK L Sbjct: 810 LKDKFGKIHKQLLDDQKAKQKAELKKAVEIVTEHFKQNPDSPYFVSKLPISANSKALSDA 869 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVL--IVVTEDLLDRFNAVDLA 856 + +Q K + + L + + V+ V E++ + +A DLA Sbjct: 870 IKHVQTKAKDKTVYLFATDDDAEGKVIHGCYVAENVGKQLSAKDLA 915 >gi|19114552|ref|NP_593640.1| mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted) [Schizosaccharomyces pombe 972h-] gi|3183171|sp|O13914|SYA_SCHPO RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|2330773|emb|CAB11162.1| mitochondrial and cytoplasmic alanine-tRNA ligase Ala1 (predicted) [Schizosaccharomyces pombe] Length = 959 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 279/774 (36%), Positives = 416/774 (53%), Gaps = 71/774 (9%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQ 59 + IR TFL++F+ +GH ++PSSS+IP +DPTL+F N+GM FK IF G P + Sbjct: 13 NEIRRTFLKYFEDHGHTIVPSSSVIPYDDPTLLFANAGMNQFKPIFLGTVDPSSDFAKLK 72 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+RAGGKHNDL++VG+ N HHT FEMLGN+SFG YFK+ AI +AWDLLT + Sbjct: 73 RACDSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIAMAWDLLTNVYG 132 Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L + +LY+T + + D EA +LW I G+ ++I + DNFW M + GPCGP Sbjct: 133 LKKDQLYVTYFGGHEESGLEPDLEARQLWLDI-GIDESRVIPGSLKDNFWEMGDQGPCGP 191 Query: 172 CSEIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 CSEI +D+ +P + + + +EIWN+VF+QF ++ LP +DTGMG Sbjct: 192 CSEIHYDRIGNRTVPELV---NMDDPNVLEIWNIVFIQFNREKDGSLRPLPNRHVDTGMG 248 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK----YEGNNIVN-----HRVIVDHLR 280 ER+ +V+Q KT+NYD D+F + +++T + G+ V+ +RV+ DH+R Sbjct: 249 FERLVSVIQNKTSNYDTDVFSPIFAKIQELTNARPYTGKMGDEDVDGIDTAYRVVADHVR 308 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPL---MMHLLPALCTEMGSAY 337 + +F I+DG +P NEGRGYVLRRI+RR Y R + P+ L + +MG + Sbjct: 309 TLTFAISDGGVPNNEGRGYVLRRILRRGARYVR-KKFGVPIGNFFSRLSLTVVEQMGDFF 367 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395 PEL + + E L E+E F +TLDRG + + + K + L G+ ++LY+T+G Sbjct: 368 PELKRKVDDVRELLDEEEESFSRTLDRGEKMFEQYAAAAKKTPSKTLQGNDVWRLYETYG 427 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + G+ ID F A + ++ S G SG Sbjct: 428 FPVDLTHLMAEEAGIK-IDEPGFEAAQARSKEISKQASKGGSSG---------------D 471 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVS--SIVKAIVQQG---EIVEEAVSGQK 510 + D+ K D + + + N VS S++K I +G + E SG++ Sbjct: 472 DLLVLDVHALGALSKMDD--IPETDDVFKHNSVSLKSVIKGIYHKGGFQKSTEGFNSGEQ 529 Query: 511 VEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAIVERGILRTEM 569 + ++ D+T FYAE GGQ DTG + DG+ ++T+VQ A G +H +E G L Sbjct: 530 LGLLLDRTNFYAEQGGQEYDTGHIVIDGVADFRVTNVQVYA-GYVLHTGFLEYGNLTVND 588 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 S+V D R L NH+ TH+L+ AL LG + Q GS ++ + LRFD ++ I Sbjct: 589 SVVCEYDEIRRWHLMNNHTVTHILNLALRNTLGDGIDQRGSLVSQEKLRFDFSYKSSIPI 648 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 +L +E+ N++I NL V ++ + A +G A+ G Y D VRVV + Sbjct: 649 DKLLLVENYCNNVIQDNLSVYSKEVALSKAKEINGLRAVFGEVYPDPVRVVCIGVDIDTL 708 Query: 682 ----EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + D +S CGGTH +GEI I+ E+ I GIRRI A+T A Sbjct: 709 LQEPKKPDWTKYSIEFCGGTHCDKSGEIKDFVILEENGIAKGIRRIVAVTSTEA 762 >gi|213025001|ref|ZP_03339448.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 514 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 244/543 (44%), Positives = 335/543 (61%), Gaps = 42/543 (7%) Query: 149 DKIIRITTN-------DNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEI 200 ++IIRI N DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+RYIEI Sbjct: 4 ERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEI 63 Query: 201 WNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT 260 WN+VFMQF +Q LPK S+DTGMGLER+A VLQ +NYDIDLF+ LI+A +VT Sbjct: 64 WNIVFMQFNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIEAVAKVT 123 Query: 261 GMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP 320 G GN + RVI DH+RS +FL+ADG+LP+NE RGYVLRRI+RRA+ + +LG E Sbjct: 124 GSTDLGNKSL--RVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKET 181 Query: 321 LMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE 380 L+ L MGSA EL + + +E+ L++E+E+F +TL+RGL LLD L+ L D Sbjct: 182 FFYKLVGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQGD- 240 Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440 L+G+ AF+LYDT+G P+D+ D+ R + +D F A+EEQR RAR S G G+ Sbjct: 241 TLDGETAFRLYDTYGFPVDLTADVCRERNIK-VDEAGFEAAMEEQRRRAREAS-GFGADY 298 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 I A++F GYD L ++ V A+ G+ Sbjct: 299 NAMIRVD-----SASEFKGYDHLE-----------------------LNGKVTALFVDGK 330 Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560 VE +GQ+ VV DQTPFYAE+GGQ+GD G G G + D QK + I H + Sbjct: 331 AVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGFTFAVDDTQKYGQAIG-HLGKL 389 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 G L+ ++ +D R ++ +NHSATHL+H AL +LG+HV+Q GS ++ LRFD Sbjct: 390 SAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQVLGTHVAQKGSLVSDKVLRFD 449 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680 +H++ + +E++ +ED VN I +NLP+ T IM+ + A A GA AL G KY++RVRV+S Sbjct: 450 FSHNEAMKPSEIREVEDLVNAQIRRNLPIETNIMDLDAAKAKGAMALFGEKYDERVRVLS 509 Query: 681 VEY 683 + + Sbjct: 510 MGF 512 >gi|326491819|dbj|BAJ98134.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 1004 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 279/776 (35%), Positives = 404/776 (52%), Gaps = 82/776 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R F++FF+ H PSS ++P DPTL+F N+GM +K +F G P + +A Sbjct: 60 VRQVFIDFFRSRAHTPWPSSPVVPFEDPTLLFANAGMNQYKPVFLGAADPDSPLGRLRRA 119 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK++AI AW+LLT+ + L Sbjct: 120 CNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKDQAIAYAWELLTQVYKL 178 Query: 121 DQRRLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 R+Y T + D++A +W K L ++++ DNFW M +TGPCGPC Sbjct: 179 PTDRIYATYFGGDDKAGLAPDTDSKDIWLKY--LPTERVLPFGCKDNFWEMGDTGPCGPC 236 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EI FD+ G L + + IEIWNLVF+QF ++ LP +DTGMG E Sbjct: 237 TEIHFDRIGNRDAASL--VNNDDPTCIEIWNLVFIQFNREADGTLRSLPAKHVDTGMGFE 294 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-----------GNNIVNHRVIVDHLR 280 R+ ++LQ K +NYD D+F L A ++ G + G + +RV+ DH+R Sbjct: 295 RLTSILQNKMSNYDTDVFMPLFDAIHKLAGAGIQPYSGKVGSDDVGKVDMAYRVVADHIR 354 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + SF IADG P N+GR YVLRRI+RRA+ + + L + L+ MG +PE Sbjct: 355 TLSFAIADGSRPGNDGREYVLRRILRRAVHFGHQKLMAKQGFFSSLVDVFVRVMGDVFPE 414 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLL----DGVLSHLGKDEILNGDVAFKLYDTHG 395 L + I++ ++ E+ F TL +G D V + G +L+G AF L+DT+ Sbjct: 415 LKDNEKNIKDIIKEEEASFESTLAKGYERFKKAADAVKENGGT--VLSGQDAFVLWDTYD 472 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + + GL+ +D+ FN A+EE R +AR G S+ AT Sbjct: 473 YPIDLTEVMAVDFGLS-VDMEGFNIAMEEARQKARNARYKAGGK-------SIVLDANAT 524 Query: 456 QFIGYDLLRGS----KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 + L + KF E SS+VKAI E + A + Sbjct: 525 SHLRNQGLASTNDSPKFKHEVH---------------SSVVKAIYTGSEFIATASGDEDF 569 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMS- 570 +V + T FYAE GGQ+ DTG G + +VQ A G +H G +S Sbjct: 570 GLVLESTSFYAEQGGQIYDTGSIEGPTGSFTVNNVQVFA-GYVLHIGSFLEGPNSKALSV 628 Query: 571 ---LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + +DY R ++ NH+ TH+L+ AL +LG H+ Q GS + P+ LRFD +H KP+ Sbjct: 629 GDEVKCKVDYTRRTLIAPNHTCTHMLNFALREVLGDHIDQKGSIVLPEKLRFDFSHGKPV 688 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV----- 681 +L+ IE VN I L V + + DA +G A+ G Y D VRVVS+ Sbjct: 689 QPEDLRKIEYIVNQQIKDELEVSAQEIKLVDAKRINGLRAVFGEIYPDPVRVVSIGRKVE 748 Query: 682 ------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E ++ S+ LCGGTH+S+T + ++SE I G+RRI A+T + A Sbjct: 749 DLLANPESKEWLSISTELCGGTHISNTRDAAAFALISEEGIAKGVRRITAVTAECA 804 >gi|225629791|ref|ZP_03787728.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591355|gb|EEH12458.1| alanyl-tRNA synthetase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 535 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 238/553 (43%), Positives = 334/553 (60%), Gaps = 33/553 (5%) Query: 219 LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDH 278 LPK IDTGMGLER+A V+Q +NYDIDLF LI S++ G N + H++I DH Sbjct: 5 LPKKCIDTGMGLERIAAVMQNVHDNYDIDLFSALISKSQEYCG---RTENKIAHKIIADH 61 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAY- 337 LR+++FLIA+G+LP NEGR YVLRR++RRA Y LLGY + L+ + P L SAY Sbjct: 62 LRAAAFLIAEGVLPGNEGRNYVLRRLIRRATRYIHLLGYNDSLLHRIFPVLIDSTSSAYM 121 Query: 338 -PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 EL++AK LIE TL+SE+E F TL +G+ LL+ + L + L G+ AFKLYDT+G Sbjct: 122 GAELVRAKSLIETTLKSEEENFKDTLMKGINLLEKFTTDLKSGDTLPGESAFKLYDTYGF 181 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLDI DIL + + D F+ A+ EQ+ RARA G G + E++WF L K+G T+ Sbjct: 182 PLDITLDILKEKKI-NFDQKGFDDAMGEQKERARAKWAGSGEKSVEQVWFDLINKFGKTK 240 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 F+GY+ S D K+L + + E+++ A G+K+ ++ D Sbjct: 241 FVGYEFNEVS-----DAKILA----------------IVSSKNEVIDSAKEGEKITIILD 279 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTID 576 +TPFY E+GGQ+GDTG I + I + K +++H IV+ G + ++ +ID Sbjct: 280 KTPFYGESGGQVGDTGNLIKSDRSIIIVENTNKVNDLYLHRCIVKFGSICKGNTVAASID 339 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 + R+ L NHSATHLLH L ILG HV+Q GS + PD LRFD +H+ +T +L +E Sbjct: 340 KERRQTLRRNHSATHLLHFTLRKILGDHVTQKGSLVAPDKLRFDFSHNTQVTQDQLFLVE 399 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 D VN +I +NL T+I + AI GA AL G KY+D+VRVV + S LCGG Sbjct: 400 DMVNSLIRENLSTSTKIQSMNQAIDEGAMALFGEKYSDQVRVVKIG------DSRELCGG 453 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV TGEI L IV+ESS+ G+RRIEA+TGQ A +++ + LK +A F+K + Sbjct: 454 THVEHTGEIGLFKIVTESSVAFGVRRIEALTGQEAINYVRDNEINLKKVAEFVKAPVSEI 513 Query: 757 VGRVEEIWEEYRK 769 R+ + +E++K Sbjct: 514 TSRLSILSQEHKK 526 >gi|50365429|ref|YP_053854.1| alanyl-tRNA synthetase [Mesoplasma florum L1] gi|59798527|sp|Q6F0K3|SYA_MESFL RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|50363985|gb|AAT75970.1| alanyl-tRNA synthetase [Mesoplasma florum L1] Length = 892 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 300/932 (32%), Positives = 475/932 (50%), Gaps = 107/932 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR +L+FF++ H L SLIP DP+L++ NSG+ K F G++ P +T Sbjct: 6 TNEIRKMWLDFFKEKNHHFLEPVSLIPVEDPSLLWINSGVATLKPYFDGRKTPPSPRLTN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLD 121 QK +R ND++NVG T RHHT FEMLGNFS G YFK+ AI AW+LLT K F + Sbjct: 66 SQKAIRT----NDIENVGVTARHHTMFEMLGNFSIGDYFKKEAISFAWELLTSDKWFAIP 121 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGE 181 +LYITV++ED EA++ W G+ D I R+T + NFW + + GPCGP +EIFFD+GE Sbjct: 122 VEKLYITVFNEDIEAYEYWINDIGIKQDHIFRLTRDTNFWDVGQ-GPCGPNTEIFFDRGE 180 Query: 182 -----CIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 I L E +RYIEIWN+VF QF LP+ +IDTG GLER+A++ Sbjct: 181 KWDKENIGPRLLAEDIENDRYIEIWNIVFSQFNNDGFNNYSELPRKNIDTGAGLERIASI 240 Query: 237 LQEKTNNYDIDLFKHLIQASEQV--TGMKYEGNNIVNHR-----------VIVDHLRSSS 283 Q+ N++ D+F I+ E + KY N + + VI DH+R++S Sbjct: 241 FQDTPTNFETDIFWPTIKQIENICDANFKYSIENYFDEKAEQTKINTAFKVIADHVRATS 300 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 F IADG+ P N+ RGY++RR++RRA+ LG P + L+ + M YP L++ Sbjct: 301 FAIADGVFPGNKDRGYIIRRLIRRALMKGMELGINGPFLSTLVINVIDVMKDFYPYLLEK 360 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQD 403 + LIE T+ E+E+F KTL +G L+ ++ + D+ + G A L++++G P++ + Sbjct: 361 QNLIETTILIEEEKFLKTLSKGYEALNKMIEN---DKKVTGKNALLLFESYGYPIEQTIE 417 Query: 404 ILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA----TQFIG 459 I R + ++I FN LE+ + +AR L K W E + ++F G Sbjct: 418 IAEDRKVK-VEIEEFNSLLEQAKEQARNARKDL------KAWDKQNEIFTKINVESEFTG 470 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 + + T+ ++ + I EI+ EA + ++V V+ D+TP Sbjct: 471 W----------------------EETSHKNAKIVYIFTDDEILTEA-TDKEVYVILDKTP 507 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQN 579 FYAE GGQ D G + R ++ D Q+ +H +++ G ++ + +D Sbjct: 508 FYAEKGGQAADKGYLVNKEARCEVIDTQQGPNHQHIHKILLD-GSIKIGDQIDAFVDETK 566 Query: 580 RRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 R NHS THL+H AL +LG V Q+GS GLR D T++ I + EL + E V Sbjct: 567 RTLTMKNHSGTHLIHSALRVVLGETVMQSGSYNDEHGLRMDFTYNDSIKAEELIAAEKLV 626 Query: 640 NDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTH 698 D I + + + +DA++ GA A KY+D VRVV G SS LCGGTH Sbjct: 627 LDKINEKINREVYFCSMKDAVSKYGALAFFTEKYDDIVRVVKF-----GDFSSELCGGTH 681 Query: 699 VSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMG----------QDEKLKSLASF 748 V +T +I I S +G+ R++ +T ++A + + Q++ K + Sbjct: 682 VDNTIDIEDFMITGLESKGSGVYRVKCLTSKKAINEYLNTEFNKLLKLIQEQNSKYENTK 741 Query: 749 LKVSQGNVVGRVEEIW------EEYRKLQLIHAKRKLQL-----NVEDLSCHKIAD---- 793 L + N+ V+E E ++L+LI K L +EDL K + Sbjct: 742 LIQADQNIENIVKESVTKTISKESIQELKLILEKLSAALKIYERKIEDLLTSKKLEQFKA 801 Query: 794 ---------VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTE 844 V + ++ ++ K++K+++D + K + II+L ++E V++ V+E Sbjct: 802 FEPITNDKGVGTIEQQVNGLNIKDMKNLVDEYKNKFEKLIIILTSETEEGNF-VVVGVSE 860 Query: 845 DLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQ 876 + + ++A+++ + + GGG +AQ Sbjct: 861 KIQNEYSAIEIFK---NLTISPKGGGNSSLAQ 889 >gi|291533808|emb|CBL06921.1| alanyl-tRNA synthetase [Megamonas hypermegale ART12/1] Length = 637 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 257/668 (38%), Positives = 386/668 (57%), Gaps = 43/668 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R +L+FF KNGH LPS+SLIP +DP+L+ +GM PFK FTG+ P +TT Q+ Sbjct: 6 LRRRYLDFFVKNGHLELPSASLIPKDDPSLLMIGAGMAPFKAYFTGKMTPPCTRITTSQR 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 CVR G D++NVGRT RHHT+FEMLGNFSFG YFK AI+ AW+ LT E +L + +L+ Sbjct: 66 CVRTG----DIENVGRTARHHTYFEMLGNFSFGDYFKYDAIKWAWEFLTGELELPKDKLW 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 T+Y +DEEA+K+W + ++ + I+++ DNFW + +GPCGP SEIF D GE G Sbjct: 122 ATIYPDDEEAYKIWTTETDINPEHIVKL--EDNFWEIG-SGPCGPDSEIFIDLGEERGCG 178 Query: 187 LP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 P G + +RY+EIWNLVF QF++ + L +IDTG GLER+A+VLQ K +N+ Sbjct: 179 SPTCGVGCDCDRYLEIWNLVFTQFDRTEDGKYNPLVHKNIDTGCGLERLASVLQNKPSNF 238 Query: 245 DIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLR 302 + DL +I+ + +V +Y + ++ +VI DH RS SF++ DGILP+NEGRGYVLR Sbjct: 239 ETDLMFPIIEYASKVANKEYGKDKETDISLKVIADHARSISFMVMDGILPSNEGRGYVLR 298 Query: 303 RIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTL 362 R++RRA+ +AR+LG + + + + Y EL K I++ + E++RF TL Sbjct: 299 RLLRRAVRHARMLGIEDKFLAGAVDVVDEIYSGVYDELTNRKDYIKKVISLEEDRFATTL 358 Query: 363 DRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQ 420 +G+ LL+ + L + +L+G+V FKLYDT+G P ++ +IL + +D +F++ Sbjct: 359 TQGMDLLNAEVEKLKAENKTVLDGEVGFKLYDTYGFPWELTDEILHENHMT-LDKEAFDK 417 Query: 421 ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 A++EQR+RAR G + + LR S + Sbjct: 418 AMDEQRTRAR-------------------NARGENKRMDIPDLRDSNI---------GEL 449 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 +D T + IV I + + G + ++ D TPFYAE GGQ GD G D Sbjct: 450 KVDETARQAKIV-CIWKDAKTTNSLEDGDEAGLILDVTPFYAEGGGQEGDIGSLKTDMGN 508 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 Q+ D +K +G + V G L ++ +T+D +N+ + NH+ATHLL AL + Sbjct: 509 AQVIDTKKLPDGSVYNIVHVTEGSLHVGDTVEITVDMKNKLASARNHTATHLLQAALKRV 568 Query: 601 LGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI 660 +G H++Q GS + LRFD + +PI++ +L+ +E+ VN I V MN+EDA Sbjct: 569 VGDHINQAGSAVNAHHLRFDFSSFEPISAEQLQQVEEMVNAEILTGKDVEISHMNQEDAK 628 Query: 661 ASGAAALL 668 S ++ Sbjct: 629 KSWCYGII 636 >gi|71033767|ref|XP_766525.1| alanyl-tRNA synthetase [Theileria parva strain Muguga] gi|68353482|gb|EAN34242.1| alanyl-tRNA synthetase, putative [Theileria parva] Length = 1011 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 286/783 (36%), Positives = 436/783 (55%), Gaps = 62/783 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61 +R F+++F H PSSS++P NDPTL+F N+GM FK+I G+ E + V Sbjct: 64 VRKQFIDYFVSKNHVHWPSSSVLPHNDPTLLFVNAGMNQFKDIIMGKSDENSEFGKLKMV 123 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDL++VG+ H T+FEMLGN+SFG YFK AI AWDLLT + LD Sbjct: 124 CNSQKCIRAGGKHNDLEDVGQDCYHQTYFEMLGNWSFGAYFKPEAISYAWDLLTNVYKLD 183 Query: 122 QRRLYITVY------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RLY+T + + D E ++W K L +++I+ + DNFW MA+TGPCGPC+EI Sbjct: 184 PSRLYVTYFGGDDSCEPDHETREIWLKF--LPSNRILPFGSKDNFWEMADTGPCGPCTEI 241 Query: 176 FFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +D GG SS + +E+WN+VFMQ+ + LPK +DTGMGLER Sbjct: 242 HYDH----IGGRDASSLVNADDPNVVELWNIVFMQYNRSRNGVLERLPKGCVDTGMGLER 297 Query: 233 MATVLQEKTNNYDIDLFKHLI-QASEQVTGMK-YEGNNI---VNHRVIVDHLRSSSFLIA 287 + +VL +NYD DL +I SE + ++ Y+G N V +RV+ DH+R S I+ Sbjct: 298 LCSVLNNTNSNYDTDLLNDVILYISELLPELESYKGGNSPLDVAYRVVSDHIRCLSVAIS 357 Query: 288 DGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLL 346 D + P+N+GRGYVLRRI+RRA+ Y R EP + L+ ++ +G AYP L+ ++ Sbjct: 358 DRVYPSNDGRGYVLRRILRRAVRYCRDYFNTREPFLHRLVRSVSKLLGHAYPNLVTERVN 417 Query: 347 IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILC 406 IE + E+ F +TLD+G+ +++ + +++NG AF LY ++G PLD+ +L Sbjct: 418 IESVVFDEERLFLQTLDKGVEKFKKMVAK-SEVKVINGQDAFLLYQSYGFPLDLT--MLM 474 Query: 407 ARGLA-GIDIISFNQALE--EQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 AR L G+D+I + L+ +Q+S AR ++ +++ SL T + Sbjct: 475 ARELGIGVDVIGYYTELKLHQQKSEARIYTDFNSVESRCDRLLKSLSADRINT------I 528 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA----IVQQGEIVEEAV--SGQKVEVVFD 516 L+ + D K+ K D ++ V + KA IV I++E S V +V D Sbjct: 529 LQMCNNVYTDDKL---KYDWDSSDPVRKVFKAKLLSIVTADSILKELEYDSDDLVCLVTD 585 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV-ERGILRTEMSLVLTI 575 +TPFYAE GGQ+ DTG I D L++ V K + G+ H + E G+LR L + Sbjct: 586 RTPFYAEGGGQIYDTG-YIND---LEVLRVYKLS-GLVFHFCLADESGLLRCGDECELKV 640 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 DY R +++ NH+ATH+L+ L IL Q GS + + L+FD ++ + + ++ + Sbjct: 641 DYHRRVKVASNHTATHILNFVLRDILEESSYQRGSQLDEEKLKFDYSYGQQLPDNLIRQV 700 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY--ED-GGVHSS 691 E + + + P+ T + + A+ G A KY + VRVV+V+ ED G H+S Sbjct: 701 EQRMMEFVRSGAPLRTTEIEYKKALEIPGIRANFDEKYPEVVRVVNVQMGSEDFSGEHTS 760 Query: 692 A-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---QRARSHLMGQDEKLKSLAS 747 +CGGTH+++T I + +V E I G+RR+ +T +R+R L+ ++L L Sbjct: 761 TEVCGGTHLTNTKTIQDVAVVGEEGISKGVRRLTIVTNDQCRRSRIDLLNYYQRLGDLEK 820 Query: 748 FLK 750 LK Sbjct: 821 SLK 823 >gi|242012157|ref|XP_002426803.1| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis] gi|212510999|gb|EEB14065.1| Alanyl-tRNA synthetase, putative [Pediculus humanus corporis] Length = 983 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 290/772 (37%), Positives = 424/772 (54%), Gaps = 58/772 (7%) Query: 7 IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60 +R TF++FF +K H+ + SSS IP +DPTL+F N+GM FK IF G P + Sbjct: 9 VRQTFIDFFIKKKQHQYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSDMAKWVR 68 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+LLT + + Sbjct: 69 VVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICAWAWELLTTVYHI 128 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 RLY+T + + D E K+W + G+ ++ DNFW M ETGPCGPC Sbjct: 129 SPDRLYVTYFGGDSASGLEPDSECKKIWIDL-GVPESHVLPGNMKDNFWEMGETGPCGPC 187 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SE+ +D+ G L +++ +EIWNLVF+QF ++ LPK ID GMG E Sbjct: 188 SELHYDRIGNRNASHL--VNQDDPDVLEIWNLVFIQFNRETDGSLKTLPKRHIDCGMGFE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG-------NNI-VNHRVIVDHLRSS 282 R+ +V+Q K +NYD D+F L A ++ TG Y+G + I + +RV+ DH R+ Sbjct: 246 RLVSVIQNKRSNYDTDIFTPLFDAIQKGTGSPPYKGKVGAEDVDGIDMAYRVLADHARTL 305 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ Y T+P L+ +C +G + E+ Sbjct: 306 TIALADGGRPDNVGRGYVLRRILRRAIRYGTEKLNTKPKFFSSLVKTVCDTLGDTFSEIR 365 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I E + E+E+F KTL RG LL+ ++ +GK ++L GDVA++LYDT+G P+D+ Sbjct: 366 RDPDTIMEIINEEEEQFLKTLSRGRNLLNRTIAKIGKSKVLPGDVAWRLYDTYGFPVDLT 425 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + +GL+ +D+ + EE R +A+ S G + I + + T+ Sbjct: 426 QLMAEEKGLS-VDMTGY----EEARKQAQLLSQGKEGKVDDGIALDV---HAITELQNLK 477 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLT-NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + K + K Q + + + AI + + V+ SG+K ++ D+T F Sbjct: 478 IPPTDDSPKYNYKAKQQDKNAEYEFQKCEAKITAIRHKKKFVDSINSGEKCGILLDRTLF 537 Query: 521 YAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 YAE GGQ+ D G I + + I +VQ KA G +H E G+ + ++VL +D Sbjct: 538 YAEQGGQIFDEGYMIKKNDENVEFSIYNVQVKA-GYVLHFGTTE-GVFKKGDTVVLHLDT 595 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 RR + NH+ TH+L+ AL +LGS Q GS + PD LRFD T+ +T ++K+ ED Sbjct: 596 ARRRLVMNNHTGTHILNFALREVLGSGCEQKGSLVAPDRLRFDFTNKSAMTPDQIKAAED 655 Query: 638 NVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVSV--EYEDGGVHSSA 692 +V +IA+N V + N A+A +G A+ Y D VR+VSV ED + S+ Sbjct: 656 SVKRVIAKNCEVFAK--NTPLAVAKTVNGVRAMFDEHYPDPVRIVSVGAAVEDLVANPSS 713 Query: 693 ---------LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHL 735 CGGTH+ +G + I SE +I GIRRI A+TG A L Sbjct: 714 SLGMSVPAEFCGGTHLHRSGHVGDFVISSEEAIAKGIRRIVALTGPEASKAL 765 >gi|315453099|ref|YP_004073369.1| alanyl-tRNA synthetase [Helicobacter felis ATCC 49179] gi|315132151|emb|CBY82779.1| alanyl-tRNA synthetase [Helicobacter felis ATCC 49179] Length = 872 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 286/764 (37%), Positives = 414/764 (54%), Gaps = 58/764 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I+ FL+ F++ H +PSSSL+P +D +L+FTN+GMV FK+IF G+ P T+ Q Sbjct: 3 IKNAFLQHFERLNHVRVPSSSLVP-DDSSLLFTNAGMVQFKDIFLGKVAPFTPRATSAQL 61 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RAGGKHNDL+NVG TNRHHT FEMLGNFSF YFKE AI A+D + K + +Y Sbjct: 62 CMRAGGKHNDLENVGYTNRHHTLFEMLGNFSFFDYFKEEAIAYAYDFVHKTLGFQNKDIY 121 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPG 185 I+V+++D +A+KLW+K + I + DNFW MA+TGPCG CSEI+ DQG + Sbjct: 122 ISVHEKDTQAYKLWQKF--VPESHIKTMGDKDNFWQMADTGPCGYCSEIYIDQGAQAFHS 179 Query: 186 GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 EG+R++EIWNLVFMQ+++ + L + IDTGMGLER+ +L+ NN+D Sbjct: 180 EQDYFGGEGDRFLEIWNLVFMQYDRSKEGVLTPLSQPCIDTGMGLERVQALLEGVQNNFD 239 Query: 246 IDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIM 305 LFK L+ E+V + Y + + RV+ DH RS FL+A G+ N GRGYVLRRI+ Sbjct: 240 SSLFKPLMACIEEVFDLPYSAHK-ESFRVLADHARSVVFLLAMGVYFDNTGRGYVLRRIL 298 Query: 306 RRAMCYARLLGY------TEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 RRA+ + LL + +EP +L ++C M Y L + + ++ ++E+E F Sbjct: 299 RRALRHGYLLEHAKGRELSEPFFYKILGSVCASMRD-YSILQEQQESLQAECKAEEELFL 357 Query: 360 KTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFN 419 TL++G+ L + L+ +EI +G VAFKLYDT+G PLD+ D+L +G+ +D+ + Sbjct: 358 NTLEKGMHLFESALAE--SNEIFSGAVAFKLYDTYGFPLDLTMDMLRDKGIE-VDLAGYE 414 Query: 420 QALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQK 479 ++EQR+R++ SG + + K F GY + +K + L Sbjct: 415 ACMQEQRARSQFKQ----SGAKDSLKTLDLSKLEPNAFEGYH----HESLKASIRALY-- 464 Query: 480 PPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI 539 P D VS V+ A K VV D+TPFY + GG +GD G + D Sbjct: 465 APDDQGALVS------------VQSAAQNTKAYVVLDKTPFYPQGGGPIGDKGVLL-DLT 511 Query: 540 RLQITDV--QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHAL 597 I V +K I + +R + + ID R +++ +HSATHLLH AL Sbjct: 512 HNPIAHVLDTQKVGAINISLVEFKREGRVGDGVIAQVID---RAEIAKHHSATHLLHLAL 568 Query: 598 STILG---------SHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLP 648 +LG + + Q GS I LRFD + + ++ AE++++E+ VN I+ Sbjct: 569 REVLGRAAQAEGKNAQIQQKGSHIETTRLRFDFSFYRALSDAEIEAVEEFVNTQISMGAS 628 Query: 649 VVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 M E A SGA L KY + VRVV + S CGG HVS + I Sbjct: 629 TNIEHMGAEAAKQSGAVMLFEDKYLEEVRVVRI------AGSLEACGGVHVSDSAHIGGF 682 Query: 709 YIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 I SS+ AG+RRIEA+ G+ + + L+ LK S Sbjct: 683 AITKSSSVSAGVRRIEAVCGKTYYQFIAQERATLRQARQKLKTS 726 >gi|225560127|gb|EEH08409.1| alanyl-tRNA synthetase [Ajellomyces capsulatus G186AR] Length = 1029 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 322/970 (33%), Positives = 481/970 (49%), Gaps = 126/970 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P Sbjct: 106 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDP---------- 155 Query: 67 CVRAGGKHNDLDNVGRT-NRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 ++D + R N TFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+ RL Sbjct: 156 -------NSDFATLRRAHNSQKTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLNPDRL 208 Query: 126 YITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 Y+T ++ D EA +LW + G++ D ++ DNFW M E GPCGPCSEI + Sbjct: 209 YVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCSEIHY 267 Query: 178 DQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMA 234 D+ GG S +++ +EIWN VF+Q+ ++ + LP +DTGMG ER+ Sbjct: 268 DR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGYERLV 323 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFL 285 ++LQ K++NYD D+F L + ++TG + Y G + I +RV+ DH+R+ +F Sbjct: 324 SILQNKSSNYDTDVFTPLFEKISEITGCRPYTGKFHEEDTDGIDTAYRVVADHVRTLTFA 383 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQA 343 I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE+ + Sbjct: 384 ISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPEIRRK 443 Query: 344 KLLIEETLRSEDERFGKTLDRGLVL-----LDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 + + E L E+ F KTLDRG L L GK L+G ++LYDT G P+ Sbjct: 444 QTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGFGK---LHGADVWRLYDTFGFPV 500 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFI 458 D+ + + RGL ID N EE R +A+ S G G T + + ++ + G + + Sbjct: 501 DLTRLMAEERGLT-ID----NAEFEEARLKAKEASKGQGKRTADVVKLTVHD-LGLLETM 554 Query: 459 GYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKVEVVF 515 D+ + + K R ++S +KAI + V+ + G++ ++ Sbjct: 555 D-DVPKTNDDAKFGR------------GNITSQIKAIYYNKKFVDSTKDIPQGEQFGIIL 601 Query: 516 DQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+T FYAE GGQ DTG I DG L + DVQ G +H ++ G S++ Sbjct: 602 DRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVYG-GYILHTGFMKYGSFNVNDSVIAE 660 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 D R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H ++ ++L+ Sbjct: 661 YDELRRWPIRNNHTGTHILNFALRQVLGDGIEQKGSLVAAEKLRFDFSHKSAVSDSDLEK 720 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA---SGAAALLGTKYNDRVRVVS--VEYED--GG 687 IE D I QN V + + AIA SG A+ G Y D VRVVS VE E+ Sbjct: 721 IERISTDYIRQNCAVYAKDVPL--AIARGISGVRAVFGETYPDPVRVVSVGVELEEILQN 778 Query: 688 VH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS-HLMGQD 739 VH S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A + ++ Sbjct: 779 VHDPRWKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIAKE 838 Query: 740 --EKLKSL------------ASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK-RKLQLNVE 784 E+L+ A L+V + E + IH K + Q + Sbjct: 839 FGERLRRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKAAQ 898 Query: 785 DLSCHKIADV----------NFMSHIISEV----DSKELKSVMDALQKKIQSGIIMLVGI 830 L K D SH++ ++ + K L ++ ++ K+Q + + Sbjct: 899 KLESKKALDAITGYFEAPENKVASHLVMQLPISANPKALSDSLNFVKTKMQDKSVYMFAA 958 Query: 831 SKEKKASVLIVVTEDLLDRFNAV--DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQA 888 KE V L A D A + ++GG GG P ++ G K D+A Sbjct: 959 DKEAGKVVHGCHVAQALSEQGATPNDWANTVSSIVGGRAGGKAP-ISIGNGTEAEKLDEA 1017 Query: 889 IAGVASFLKK 898 I +L+K Sbjct: 1018 IKAATEYLEK 1027 >gi|170039921|ref|XP_001847766.1| alanyl-tRNA synthetase [Culex quinquefasciatus] gi|167863508|gb|EDS26891.1| alanyl-tRNA synthetase [Culex quinquefasciatus] Length = 967 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 311/975 (31%), Positives = 491/975 (50%), Gaps = 109/975 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 IR FL+FF++ H + SSS IP +DPTL+F N+GM FK IF G P + Sbjct: 10 IRNIFLDFFKEKEHLYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRT 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+LLT L Sbjct: 70 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICTWAWELLTDRLKLP 129 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + + D E +W K+ G+ + I+ + DNFW M ETGPCGPCS Sbjct: 130 SDRLYVTYFGGHPESGLEPDLECRDIWLKL-GVKEEHILPGSMKDNFWEMGETGPCGPCS 188 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+QF ++ +LPK ID GMG E Sbjct: 189 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQFNREQDGSLKLLPKKHIDCGMGYE 245 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNHRVIVDHLRSS 282 R+ +V+Q+K +NYD D+F L QA ++ TG Y+G + +RV+ DH R+ Sbjct: 246 RLVSVIQDKRSNYDTDVFVPLFQAIQKGTGAPDYQGRVGAEDVDGVDMAYRVLADHARTI 305 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G +PE+ Sbjct: 306 TIALADGGFPDNTGRGYVLRRILRRAVRYASEKLNGKPGFFATLVDTVVELLGDTFPEVK 365 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I+ + E+++F KTL RG LL+ ++ LG +++ GDVA++LYDT+G P+D + Sbjct: 366 KDPQHIKNIINEEEQQFLKTLSRGRNLLNRTIAKLGDSKVIPGDVAWRLYDTYGFPVD-L 424 Query: 402 QDILCARGLAGIDIISFNQA------LEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 ++ ID+ + +A + + + +++ ++ L + L+EK T Sbjct: 425 TGLMAEEKNMTIDMEGYEKAKHQSYIISQGKEKSKTATVDLDVHAISE----LQEKKVPT 480 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKP-PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 + K K P + + V A+ V+E +GQ+ V+ Sbjct: 481 T---------NDTFKYHYKAESTDPLAAYVFEPCTGKVLALRYNNAFVDEVQAGQECAVI 531 Query: 515 FDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 D+T FYAE+GGQ+ D G + + + V + G +H +VE G+LR + Sbjct: 532 LDKTNFYAESGGQIYDQGYLLKVNDESTEFNVNLVYNRG-GYVLHIGVVE-GVLRVGDEV 589 Query: 572 VLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 +D RRQL++ NHSATH L+H+L +LG Q GS + P+ LRFD T+ +T Sbjct: 590 ACHMDVV-RRQLTMKNHSATHALNHSLLKVLGLDTDQRGSLVVPEKLRFDFTNKAAMTIE 648 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED-- 685 ++ E +++ +N+ V + A A G ++ Y D VRV+S V ED Sbjct: 649 QVAEAERLTREVVKKNMQVYAKESKLASAKAIKGLRSVFDEVYPDPVRVISFGVPVEDLE 708 Query: 686 -------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-----RS 733 G S CGGTH+ +G ++ I +E +I GIRRI A+TG A ++ Sbjct: 709 ANPEGVAGTETSVEFCGGTHLHQSGHMVDFVITTEEAIAKGIRRIVALTGPEAIKALKKT 768 Query: 734 HLM-GQDEKLKSLASFLKVSQGNV--VGRVEEIWEEYRKLQLIHAK--------RKLQLN 782 L+ G+ LK+ K + V ++ E+ E+ + + + K + L+ Sbjct: 769 ELLEGELNALKATIDADKTGADSREHVKKIVELNEDVSQAVIPYVKKDEIRNQLKSLKKT 828 Query: 783 VEDLS------------------CHKIADVNFMSHIISEV-DSKELKSVMDALQK-KIQS 822 ++D C D F+ H + ++K L S + ++K ++ Sbjct: 829 LDDKERAARAAVATTVVEAAKELCAANKDAPFIVHRLEAFSNTKALDSALKEVRKLNVEQ 888 Query: 823 GIIMLVGISKEKKASVLIVVTEDLLDRFNAVD--LARLSAKVLGGGGGGGRPHMAQSGGP 880 + + KK L V + +++ + ++ +S + GG GGG+P AQ+ G Sbjct: 889 SALFVSSDPDTKKIFCLASVPKSAVEKGLKANEWISHISPSM--GGKGGGKPESAQASGG 946 Query: 881 NGNKADQAIAGVASF 895 +K ++ + +F Sbjct: 947 AFDKVEEILELARAF 961 >gi|94502213|ref|ZP_01308705.1| alanyl-tRNA synthetase [Oceanobacter sp. RED65] gi|94425654|gb|EAT10670.1| alanyl-tRNA synthetase [Oceanobacter sp. RED65] Length = 448 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/436 (52%), Positives = 300/436 (68%), Gaps = 14/436 (3%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR FL +F++NGH ++ SSSLIP NDPTLMFTN+GM FK+ F GQE Y + Sbjct: 3 TAEIRQAFLRYFEENGHTVVASSSLIPANDPTLMFTNAGMNQFKDTFLGQETRNYTRAAS 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI+ AW LT + +L Sbjct: 63 SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKREAIKFAWGFLTGKDWLNLP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 +L +TVY +D+EA+ +W + GL DKIIRI N DNFW M +TGPCGPCSE Sbjct: 123 VEKLLVTVYADDQEAYDIWHQEMGLPEDKIIRIGDNKGEKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IFFD G+ I GG PG+ EE G+R+IEIWN+VFMQ+ + + LPK SIDTGMGLER+ Sbjct: 183 IFFDHGDHIWGGKPGTPEEDGDRFIEIWNIVFMQYNRYADGKMEPLPKPSIDTGMGLERI 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 + ++Q +NY+IDLF++LI A+ + TG + N + VI DH+RS FLI+DG++P+ Sbjct: 243 SAIMQGVHSNYEIDLFQNLIAAAAKATGTQDLSNKSL--LVIADHIRSCGFLISDGVMPS 300 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LLG T+ L+ AL EMG AYPEL Q + +E+ L+ Sbjct: 301 NEGRGYVLRRIIRRALRHGHLLGATDLFFFKLVAALVDEMGDAYPELKQNQAQLEKILKL 360 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+E+F KTLD G+ LL+ ++ L K + + G+ FKLYDT+G P+D+ DI + L + Sbjct: 361 EEEQFAKTLDNGMKLLEEAIAEL-KGDTIPGETVFKLYDTYGFPVDLTADIAREKDLK-V 418 Query: 414 DIISFNQALEEQRSRA 429 D F +EEQ++ Sbjct: 419 DEAGFESCMEEQKNNG 434 >gi|47937910|gb|AAH71378.1| Aars protein [Danio rerio] Length = 757 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 273/765 (35%), Positives = 407/765 (53%), Gaps = 76/765 (9%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY---- 58 + IR F++FF+++ H+ + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TAAQIREKFIDFFRRHEHQYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAR 65 Query: 59 -QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 + QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFK A ++A +LLT+E Sbjct: 66 LRRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKHLACKMALELLTQE 125 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + + D E ++W + G+ +I+ + DNFW M +TGPC Sbjct: 126 FGIPIERLYVTYFGGHADAGLEPDLECKQIWLDL-GMEESRILPGSMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + + + +EIWNLVF+QF ++++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNMDDPNVLEIWNLVFIQFNRESETVLKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + + + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTGKVGAEDTDGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + ++DG P N GRGYVLRRI+RRA+ Y+ LG L+ + +G A Sbjct: 301 HARTITIALSDGGRPDNTGRGYVLRRILRRAVRYSHEKLGAQRGFFASLVDVVVESLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + GD A+ LYDT+G Sbjct: 361 FPELRKDPDMVKDIINEEEAQFLKTLSRGRRILDRKIQSLGDSTTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 PLD+ I RG+ G+D+++F EE++ A+ S G GSG + I + Sbjct: 421 PLDLTALIAEERGM-GVDLLAF----EEEKKAAQLKSQGKGSGDEDHIMLDI-------- 467 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTN----GVSSIVKAIVQQGEIVEEAVSGQKVE 512 D LR D + D N V A+ ++ V+E ++GQ+ Sbjct: 468 -YAIDELRNKGVAATDDSPKYKYTSDDNGNYEFEQAVGTVLALRRERMFVDEVITGQECG 526 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTE 568 V+ D+T FYAE GGQ D G + + R++ T + G +V H G L+ Sbjct: 527 VLLDKTSFYAEQGGQSFDEGYMLRENDSAEDRMEFTVKNTQVRGGYVLHIGTVYGTLKVG 586 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 L L +D RR + NH+ATH+L++ L ++LG Q GS + PD LRFD T ++ Sbjct: 587 DRLTLHVDEARRRPIMSNHTATHILNYGLRSVLG-EADQRGSLVAPDRLRFDFTAKGAMS 645 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK------YNDRVRVVSV- 681 + E++ E+ +IA V DA + A A+ G + Y D VRVVS+ Sbjct: 646 TDEVRRTEEIAAAMIADAKGVYAL-----DAPLAAAKAIQGLRAVFDETYPDPVRVVSIG 700 Query: 682 ----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 G + S CGGTH+ ++ IVSE +I Sbjct: 701 VPVEELLADPNSPAGSLTSIEFCGGTHLQNSSHAAPFVIVSEEAI 745 >gi|115610688|ref|XP_797369.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Strongylocentrotus purpuratus] gi|115964130|ref|XP_001180526.1| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase) (AlaRS) [Strongylocentrotus purpuratus] Length = 1041 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 304/931 (32%), Positives = 465/931 (49%), Gaps = 114/931 (12%) Query: 4 VSSIRTTFLEFFQK-NGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----V 57 S +R FL+ FQ N H +PSSS+IP DPTL+FTN+GM FK+IF G P Sbjct: 78 ASQVRKKFLDHFQGLNDHVFVPSSSVIPYGDPTLLFTNAGMNQFKDIFQGTIHPDMVQNC 137 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 Y+ V QKC+R GGKHNDLD+VG+ HHTFFEMLGN+SFG +FK+ A +A DLLT Sbjct: 138 YRRVVNSQKCIRVGGKHNDLDDVGKDTTHHTFFEMLGNWSFGDFFKKEACTMALDLLTSV 197 Query: 118 FDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L LY T + DE ++W + G+ D+++ DNFW M GPC Sbjct: 198 YGLPLENLYFTYFKGNSELQLGADEATRQIWLDL-GVPEDRVLPFGMADNFWEMGAVGPC 256 Query: 170 GPCSEIFFDQ------GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMS 223 GPC+EI FD+ + G P +EIWNLVFMQF + LPK Sbjct: 257 GPCTEIHFDRHGNRNASHLVNLGDPD-------VLEIWNLVFMQFYRNEAGSLHDLPKHH 309 Query: 224 IDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRV 274 +DTGMGLER+ ++LQ ++YD DLF+ LI+ E+ ++ Y+G ++I +R Sbjct: 310 VDTGMGLERLVSILQGVPSSYDTDLFQPLIKRLEETCPVRPYQGLLGEKDQDHIDTAYRA 369 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEM 333 + DH R + IADG P ++ RGYV++R++RRA+ YA P + L+ + + Sbjct: 370 VADHARMLTVAIADGCRPDSQKRGYVIKRVIRRAVRYATEKLQAPPGALGSLVHLVVISL 429 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393 G+ YPEL + + I + + +E+E+F TL +G L ++ L +L GD+A+K+YD Sbjct: 430 GNTYPELEEDPVYIADVINNEEEQFLTTLKKGEKYLKKAITELSSQTVLPGDIAWKMYDA 489 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQA-LEEQRSRARA--------HSLGLGSGTTEKI 444 +G PLD+ I GL G+DI F ++ LE + +R ++ L + + Sbjct: 490 YGFPLDLTTLIADENGL-GVDIEGFEKSRLESKEITSRGGIKNQQNLSNIKLETTDISHL 548 Query: 445 W-FSLKEKYGATQFIGYDLLRGS-KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV 502 S+K+ + ++ RG F + +L K P +G V Sbjct: 549 HELSVKDTDDSYKYNYQHHRRGKYTFPRIHAHILALKTP----------------KG-FV 591 Query: 503 EEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG---DGIRLQITDVQKKAEGIFVHHAI 559 E A SG++ ++ D+T FYAE GGQ D G + + + + DVQ + G +V H Sbjct: 592 ECAASGEECAIILDRTTFYAEQGGQQWDEGSFVSADDEELMFSVYDVQ--SYGGYVLHLG 649 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 + + L ++ + R +L NH+ TH+L+ AL +LG H+ Q GS + PD RF Sbjct: 650 TTAETVSIGDHVTLYVNEERREKLMRNHTGTHILNFALRQVLG-HIEQKGSSVAPDRFRF 708 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRV 678 D K I+ +L+ I N++I+ +LPV + + A+ G + G Y D V V Sbjct: 709 DFNAEKSISDRQLQQISSIANNLISNSLPVHQESIPLQKALTIEGLRTMTGETYPDPVTV 768 Query: 679 VSVEYEDGGVH----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 V + ++DG ++ S LCGGTHV +TG I L IVSE + G+RR+ +T Sbjct: 769 VCIGHQDGQLNGDMTKLGMETSLELCGGTHVKNTGHIRRLVIVSEKLVSKGVRRLTVVTS 828 Query: 729 QRARSHLMGQDEKLKSLASF----LKVSQGN-------VVGRVEEIWEEYRKLQL-IHAK 776 ++ L+ L+ VS N V+ +E + E+ + + K Sbjct: 829 NDVMLADYTSNKFLQRLSQLETEVYNVSTSNNPEMRDDVIASLESLVEDLEGAHIDLWKK 888 Query: 777 RKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGI------IMLVGI 830 R++ V D M + + + D KSV+ + K++ + LVG+ Sbjct: 889 REMNRRVAD-----------MQNKLKKADKLNKKSVIKQVAKRLHEEFREKKSEVCLVGV 937 Query: 831 SKEK-KASVLIVVTEDLLDRFNAVDLARLSA 860 + + VL+ V + L D F + L LS Sbjct: 938 TGDSIDNKVLLKVQQSLEDEFGSTPLMLLST 968 >gi|156089757|ref|XP_001612285.1| alanyl-tRNA synthetase family protein [Babesia bovis] gi|154799539|gb|EDO08717.1| alanyl-tRNA synthetase family protein [Babesia bovis] Length = 978 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 278/789 (35%), Positives = 421/789 (53%), Gaps = 57/789 (7%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61 +R+ F+ F+K+GH SS ++P NDPTL+F N+GM FK+I TG+ E + V Sbjct: 25 VRSEFIRHFEKHGHVFWKSSPVLPHNDPTLLFANAGMNQFKDIITGKADQSTEYGRLRRV 84 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VGR + HHTFFEMLGN+SFG YFK+ AI +AW+L+T+ + LD Sbjct: 85 CNSQKCIRAGGKHNDLDDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDMAWELMTEVYKLD 144 Query: 122 QRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+T + DEEA LW + L A +I+ DNFW MA+TGPCGPC Sbjct: 145 KSRLYVTYFGGDPKLPNCGPDEEARDLW--LRHLPASRILPFGMKDNFWEMADTGPCGPC 202 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI +D GG +S + +E+WNLVFMQ+ +++ +LP+ +DTGMG Sbjct: 203 SEIHYDH----IGGRDAASLVNADDPMVVELWNLVFMQYNRKSDGSVELLPRPCVDTGMG 258 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNNI---VNHRVIVDHLRSSSF 284 LER+ VL+ +NYD DLF + ++ Y G++ V +RV+ DH R + Sbjct: 259 LERVCAVLKSSNSNYDGDLFTDIFAYVNKLMPHLPPYGGSDSMIDVAYRVVADHARCLTV 318 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPELIQA 343 IADG+ P+N+GRGYVLRRI+RRA+ Y + LG + P M L+ + +G A+PE+ Sbjct: 319 AIADGVEPSNDGRGYVLRRILRRAVRYGKEHLGSSGPFMSKLVDCVVASLGVAFPEIQNN 378 Query: 344 KLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL------GKDEILNGDVAFKLYDTHGLP 397 I T+ +E+ F +TLD+G +++ L KD +++G AF LY + G P Sbjct: 379 NDKIAATIHNEEVLFLETLDKGCDRFRKMVAKLQAGTENSKDLVVSGADAFLLYSSFGFP 438 Query: 398 LDIMQDILCARGLA-GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 D+ Q L AR + +DI FN+ + + + L E+ L A Sbjct: 439 PDLTQ--LMAREMGLDVDIDGFNEHFKRHQQLSE-KKLCKSDDPVEQGMADLLSTLSADV 495 Query: 457 FIGYDLLRGSKFMKEDRKV--LCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 G + + K + +DL V + + + + + G +V Sbjct: 496 LATISNSIGGRVTDDSLKYHGFAEAYDVDLEYDVEVLAQWSLSG--LNKPLTEGDVFVLV 553 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+TPFYAE+GGQ+ D G +G + V K A G+ H + G + Sbjct: 554 LDRTPFYAESGGQIWDVG-TLGP---FNVMKVLKMA-GMVFHFCVYHEGNAMPGARVKAK 608 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +DY+ R +++ NH+ THLL+ L + Q GS + + L+FD+ +K + L+ Sbjct: 609 VDYKRRVKVACNHTGTHLLNFVLREVYDEQSYQKGSQLDEEKLKFDIAANKQMPDETLQR 668 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE----DGGVH 689 IED + +II N + R ++ +DA+ G A Y + VRVV++ + DG + Sbjct: 669 IEDRMQEIIDANWKIEVREIDFKDAVEIPGIRANFTDVYPEVVRVVAMTKDGQPIDGKAY 728 Query: 690 SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR---ARSHLMGQDEKLKSLA 746 S +CGGTHV TG + IV E S+ G+RR+ T ++ +++ L ++L++L Sbjct: 729 SVEICGGTHVPFTGVLKSAIIVGEESVSKGVRRLTLATNEKSEDSKAILASYWQQLETLE 788 Query: 747 SFL-KVSQG 754 S L K S G Sbjct: 789 SELYKFSDG 797 >gi|325120127|emb|CBZ55681.1| hypothetical protein NCLIV_061050 [Neospora caninum Liverpool] Length = 1034 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 296/845 (35%), Positives = 423/845 (50%), Gaps = 124/845 (14%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPV--YQA 60 ++R+ +++FF+ +GH + PSS +IP D TL+F N+GM FK IF GQ P+ + Sbjct: 28 AVRSAYVDFFEVHGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQVDRNSPLSKLRR 87 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 VT QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG YFK AI AW LLT+ + + Sbjct: 88 VTDTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKRDAIAWAWQLLTEVYKI 147 Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 + RLY + + D EA LW + L ++++ +NFW MA+TGPCGP Sbjct: 148 PKDRLYASYFGGDPRLPTCPPDNEARDLW--LQYLPPNRVLPFGAKENFWEMADTGPCGP 205 Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ GG SS + +EIWNLVFMQ+ ++ LP +DTGM Sbjct: 206 CSEIHYDR----IGGRDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261 Query: 229 GLERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMK-YEG------NNIVN--HRVIVDH 278 GLER+A+VLQ+K +NYD DLF L + +E G++ YEG ++++ +RV+ DH Sbjct: 262 GLERVASVLQDKQSNYDTDLFIALFDKIAELTPGLRPYEGKIGEEDKDLIDMAYRVLADH 321 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337 R + IADG P+NEGRGYVLRRI+RRA+ YAR LG E L+ + + +GS + Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMKEGAFPQLVSVVVSLLGSTF 381 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395 PE+ + + + L E+++F +TLD G+ V + L ++ G AF LY T+G Sbjct: 382 PEMKKNEEKVIRILHKEEQQFSRTLDNGVERFKKVANSLKAKGVKVFPGSEAFTLYSTYG 441 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 PLD+ Q + GL +D F + + R + S G GA Sbjct: 442 FPLDLTQLMAEEVGLQ-VDAEEFERKFDAHRVASENTSFKQGGA-------------GAV 487 Query: 456 QFIGYD----LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV----------------KAI 495 + D L + D Q DL V+ K Sbjct: 488 YALPPDQHHLLAKNRNLAPTDDSAKYQWNVKDLAALVAQDAVEAAPVKAKVAAIWDGKRF 547 Query: 496 VQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGI 553 V S V V+ D+T FYAE GGQ+GD G + G ++ D QK + + Sbjct: 548 APDAAAVASPTSENFVAVILDKTCFYAEQGGQVGDVGRLVDLSSGAEFEVIDSQKSGDYV 607 Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL------------ 601 +H V +G L+ LV +DY R +L+ +H+ THLL+ AL +L Sbjct: 608 -LHIGTVSKGTLKEGSELVPLVDYVRRFKLAQHHTGTHLLNFALREVLVRKMRKNAEGGD 666 Query: 602 ------GSH----------------VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNV 639 G H + Q GS + LRFD KP+ + ++ ++E+ V Sbjct: 667 KREDTNGLHIRESCLNERELSDEEDIQQKGSLVEEKRLRFDYAGEKPMENEDILAVENVV 726 Query: 640 NDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--EYED----------- 685 D IA+ PV R + E A+ G A+ G Y D VRVVSV ED Sbjct: 727 KDCIARERPVHYREIALEQAMKIPGLRAVFGEVYPDPVRVVSVGSPIEDLVELAVSGKGE 786 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDEKL 742 S LCGGTH+ + +I I+SE S+ G+RR+ A+TG AR L ++ Sbjct: 787 TPFASIELCGGTHLHNAAQIQDFCIISEESVAKGVRRVVAVTGDPALEARKELEELEKAF 846 Query: 743 KSLAS 747 SLA+ Sbjct: 847 ASLAA 851 >gi|169836863|ref|ZP_02870051.1| Alanyl-tRNA synthetase [candidate division TM7 single-cell isolate TM7a] Length = 568 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 242/606 (39%), Positives = 362/606 (59%), Gaps = 62/606 (10%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +F++FF+ H+ S+SLIP +D +L+ T +GMVPFK F G+++ + +TT Sbjct: 4 NEIRKSFVDFFKSKEHKHFESASLIP-DDKSLLLTVAGMVPFKPFFLGEKEAPFPRITTY 62 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QKC+R NDL+NVGRT RHHTFFEMLGNFSFG YFK+ AI+ +W+ +TK LD R Sbjct: 63 QKCIRT----NDLENVGRTPRHHTFFEMLGNFSFGDYFKKEAIEWSWEYITKVLKLDPER 118 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD------ 178 LY++VY D+EA+++W K G+ D+I+R+ DN+W+ G CGPCSEI++D Sbjct: 119 LYVSVYKTDDEAYEIWNKEIGVPEDRIVRLGEEDNWWAAGPVGSCGPCSEIYYDTQNMGK 178 Query: 179 ---QGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + C PG +EG+R++EIWNLVF ++ + LP+ +IDTG GLER+A+ Sbjct: 179 NNEEINCKPG------DEGDRFLEIWNLVFTEWNRLEDGSLVPLPEKNIDTGAGLERIAS 232 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 V+Q+K NN++ D+F +I+ E+V +K E I +VI DH+R+S FLIADG+LP+NE Sbjct: 233 VVQKKDNNFETDIFMPIIKGIEKVLDIKKEEFEITV-KVIADHIRASVFLIADGVLPSNE 291 Query: 296 GRGYVLRRIMRRA-----MCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLLIEE 349 GRGY+LR+I+RRA + +L + L ++ L+P + M AYPEL++ + IE+ Sbjct: 292 GRGYILRKIIRRAFGAGIVAKQKLEITKDDLFLYKLVPYVVENMKEAYPELVEKQEYIEK 351 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQDILCA 407 LR E ERF TL G+ +L + + K+ I L+ D +FKLYDT GLP ++ + IL Sbjct: 352 VLRLEQERFALTLKNGIEMLTEEIEKMDKEGIKKLSADASFKLYDTFGLPFELTELILEN 411 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +G + FNQ LEEQ R++ + + + E++G T+F GY+ K Sbjct: 412 QGYE-VSEEEFNQKLEEQVKRSKNSRVTVSDMIKDDFIDKFFEEHGKTEFTGYE-----K 465 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F E + + I K+ E +SG EV+FD+TPFYAE+GGQ Sbjct: 466 FEDEGK--------------ILHIAKS---------EGISG--YEVIFDRTPFYAESGGQ 500 Query: 528 LGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV-LTIDYQNRRQLSIN 586 + DTG ++ +V KK + +F+H + +GI + V + ID R+ + N Sbjct: 501 VADTGIITSGEFEGKVVNVVKKHD-VFIHQVEILKGIAPAVGAEVKMKIDADRRKDIQRN 559 Query: 587 HSATHL 592 H+ATH+ Sbjct: 560 HTATHI 565 >gi|320164762|gb|EFW41661.1| alanyl-tRNA synthetase [Capsaspora owczarzaki ATCC 30864] Length = 954 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 297/781 (38%), Positives = 419/781 (53%), Gaps = 78/781 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 S++R F++FF GHE +PSSS+IP +DPTL+F N+GM FK F G P Y Sbjct: 10 ASAVRQQFVDFFVSKGHEFVPSSSVIPHDDPTLLFANAGMNQFKPAFLGTADPNSRMAKY 69 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG YFK+ AI AW+LLT + Sbjct: 70 RRTANSQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKKEAISWAWELLTVVY 129 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 LD RLY+T + + D EA +W + GL A++++ +NFW M ETGPCG Sbjct: 130 KLDPNRLYVTYFGGNEKAGLEADLEARDIWLSV-GLPAERVLPYGMKENFWEMGETGPCG 188 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI FD+ I GG ++ + +EIWNLVF+QF ++ Q LP+ +DTG Sbjct: 189 PCSEIHFDR---IGGGRDAAALVNADDPDVLEIWNLVFIQFNREVDQSLRKLPRCHVDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278 MGLER+ +VLQ K +NYD D+F A + TG++ + + +RV+ DH Sbjct: 246 MGLERIVSVLQNKRSNYDTDVFVPYFTAIQAATGIRAYTGKVGADDTDGLDMAYRVVADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAY 337 +R+ + +ADG P GR YVLRR++RRA+ Y A LG L+ + T +G + Sbjct: 306 IRTLTIALADGGAPGPTGRDYVLRRVLRRAVRYCAEKLGAKPGFFASLVDVVGTSLGGFF 365 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL+++ I++ + E+ +F KTLDRG L + + K+ ++ G VA++LYDT+G P Sbjct: 366 PELVRSPQDIKDIINEEEAQFRKTLDRGKRLFERAAA-ASKNGVIEGLVAWRLYDTYGFP 424 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWF------SLKEK 451 LD+ + ++ A ID F A + A+ S G E + +LK+K Sbjct: 425 LDLTE-LMAAELKLTIDKPGFKIA----EADAKEASKGKVDEAEETVVLDVHNISALKDK 479 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE----EAVS 507 D + E+ K + + V SIV AI E+V E++ Sbjct: 480 ----GVPATDDSPKFNYRSENDKYTFE-------SAVGSIV-AIALGKELVSTVDFESLK 527 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAI---GDGIRLQITDVQKKAEGIFVHH-AIVERG 563 G KV +V D+T FYAE GGQ+ DTG A + I V K G +V H ++ G Sbjct: 528 GAKVGIVLDKTNFYAEQGGQIFDTGFATRVDNEASEFAIESV--KVYGPYVLHVGRLQGG 585 Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623 L L L+ID R + NH+ TH+L+ AL +LG+ V Q GS + PD RFD +H Sbjct: 586 SLSIGDKLTLSIDDIRRLPIMANHTTTHMLNFALREVLGNSVDQKGSLVRPDNFRFDFSH 645 Query: 624 SKPITSAELKSIEDNVNDIIAQNLPV--VTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 K +++ EL+ IE VNDII +N V V ++ +A G A+ Y D VRVVSV Sbjct: 646 PKAVSTEELRKIEKIVNDIIEKNETVYRVPTALHLAKEVA-GLRAVFDEVYPDPVRVVSV 704 Query: 682 EYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 + +S CGGTH+ T + I E I GIRRI ITG+ Sbjct: 705 GVPVEKLLADPASASWKGYSIEFCGGTHIDRTRDARRFAIFREEGIAKGIRRISGITGKE 764 Query: 731 A 731 A Sbjct: 765 A 765 >gi|219124287|ref|XP_002182439.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406400|gb|EEC46340.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 955 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 311/941 (33%), Positives = 477/941 (50%), Gaps = 95/941 (10%) Query: 7 IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQ 59 +R TF +F +++GH PSS +P +DPTL+FTN+GM +K +F G P + + Sbjct: 20 VRDTFKNYFVEQHGHVFWPSSPCVPVDDPTLLFTNAGMNQYKPLFLGTCDPNLEMSKLTR 79 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 AV + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AI +AW LT F Sbjct: 80 AVNS-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKAGAIDMAWQCLTVTFG 138 Query: 120 LDQRRLYITVY--DE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 LD RLY T + DE DEEA +LW + L D+++ DNFW M TGPCGPC+ Sbjct: 139 LDPERLYATYFAGDELTPVDEEARQLWLRY--LPDDRVLPFDARDNFWEMGATGPCGPCT 196 Query: 174 EIFFDQ------GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 EI +D+ + + LP +EIWN+VF+Q+ ++ LP +DTG Sbjct: 197 EIHYDRIGGRDASKLVNADLPD-------VMEIWNVVFIQYNREADGSLRPLPAQHVDTG 249 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278 MG ER+ ++LQ +NYD D+F L A + +TG + + + +RV+ DH Sbjct: 250 MGFERLTSILQNVDSNYDTDIFIPLFTAIQNITGARPYAKKVGKEDPEYIDMAYRVVADH 309 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAY 337 +R+ F I DG +P+N+GRGYVLRR++RRA+ Y R LG L+PA MGSA+ Sbjct: 310 IRTLCFAITDGAVPSNDGRGYVLRRVLRRAVRYGRQNLGAELGFFAKLVPAFVDVMGSAF 369 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PE+++ + + ++ E+E F +TLD+GL + + +G D+I +G A LY + G P Sbjct: 370 PEVVEKQEYVTGIIQEEEESFSRTLDKGLQKFNELAEKVGADQIFSGADAHFLYTSMGFP 429 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+ + + +G+ ++ F ++E+ ++A L +G + K + E+ + Sbjct: 430 VDLTELMAEEKGMT-LNKEEFEAKMQEEHDISQAAHLAKMAGGSGKDMRLVAEQ--TSYL 486 Query: 458 IGYDLLR---GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 +G ++ +K++ + C + + + V G I E+ + V +V Sbjct: 487 VGQNISATDDAAKYVWHEELADCVVKACFIGRNETEDMIGFV--GSISPESSA---VGIV 541 Query: 515 FDQTPFYAEAGGQLGDTGCAIGD-GIRLQITDVQKKAEGIFV-HHAIVERGILRTEMSLV 572 D++ FYAEAGGQ+ D G G ++IT+VQ A G FV H V G L ++ Sbjct: 542 LDKSSFYAEAGGQVYDVGTLTSSTGAVVKITNVQ--AYGQFVLHLGEVASGTLSVGDTVK 599 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSH------------VSQNGSCITPDGLRFD 620 ++DY R ++ NH+ TH+L+HAL +L V Q GS + LRFD Sbjct: 600 CSVDYVRRAPIASNHTMTHVLNHALREVLIKRPEKESGKTSTLTVDQKGSLVDETKLRFD 659 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679 + S +T +L +E D I +PV + DA S A+ G KY D VRVV Sbjct: 660 FSWSGQLTPEQLAEVEKLCMDRIVNAVPVDAYVAPLGDAQQISSLRAVFGEKYPDPVRVV 719 Query: 680 SVEYEDGGV--------------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 +V D V +S CGGTH+++T E +++E I GIRRI A Sbjct: 720 AV--SDHAVPEMLANPQDSQWNEYSVEFCGGTHLTNTKEAEAFVLLAEEGIAKGIRRITA 777 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR-----KLQ 780 IT A+ + +E L + V ++ V+++ E L + K+ +L Sbjct: 778 ITTGEAKKAIALANEFESKLTAAEVVQGDDLESTVKQLSAELDGLDIAAVKKMQFREQLA 837 Query: 781 LNVEDLSCHKIADVNFMSHIISEVD----SKELKSVMDALQKKIQSGIIMLVGISKEKKA 836 + + +K + S ++ D K KSVM A K+++ ++LV E Sbjct: 838 TMTKQVLAYKKQKLAGGSKVVMRFDFGVEGKVAKSVMTAFGKQVKDKALLLVTADPEADR 897 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLG-GGGGGGRPHMAQ 876 ++I + N A + A G GGG+P AQ Sbjct: 898 FMVIAGAPKAMKDLNC--KAWIEAATDGLDAKGGGKPDSAQ 936 >gi|238063896|ref|ZP_04608605.1| alanyl-tRNA synthetase [Micromonospora sp. ATCC 39149] gi|237885707|gb|EEP74535.1| alanyl-tRNA synthetase [Micromonospora sp. ATCC 39149] Length = 636 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 260/643 (40%), Positives = 373/643 (58%), Gaps = 56/643 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + I+ +L F+ NGH ++PS+ L +DP L+F N+GMV F F GQ+ P Y Sbjct: 2 KTAEIKRRYLAHFEANGHAVVPSAPLPAISDPNLLFVNAGMVQFVPYFLGQQTPPYPRAV 61 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE----- 117 +VQKC+R D+D VG+T+RH TFF+M GNFSFG YFK AI LAWDL+T+ Sbjct: 62 SVQKCIRT----PDIDEVGKTSRHGTFFQMNGNFSFGDYFKAGAIPLAWDLVTRSVAEGG 117 Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 F LD R++ TVY +D+EA ++W+ + G+ A++I+R DNFWSM GP GPCSE+++ Sbjct: 118 FGLDPERVWATVYLDDDEAAEIWRSV-GMPAERIVRRGKKDNFWSMGIPGPAGPCSELYY 176 Query: 178 DQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQN--KQERFI----LPKMSIDTGMGLE 231 D+G G G + +RY+E WNLVFMQ+E + +E F LPK +IDTGMGLE Sbjct: 177 DRGPDY-GREGGPEVDEDRYLEFWNLVFMQYEIADVTSKEDFRIVGELPKKNIDTGMGLE 235 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGN----------NIVNHRVIVDHLRS 281 RMA++LQ N Y+ID + ++ + ++TG +Y + + V RVI DH+R+ Sbjct: 236 RMASILQGVDNLYEIDEVRPILARAAELTGKRYGAHSGHVAAQSHPDDVRLRVIADHVRT 295 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELI 341 + LI DG+ P+NEGRGYVLRRIMRRA+ RLLG+ E + LLP M +YPEL Sbjct: 296 ALMLIGDGVTPSNEGRGYVLRRIMRRAIRAVRLLGWQERALPELLPVARDCMAPSYPELA 355 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPL 398 I + +E++ F TL G +LD ++ GK L+GD AF+L+DT+G P+ Sbjct: 356 TEFDRIAQYAYAEEDAFLATLRAGTTILDTAIAETKSAGK-PALSGDKAFQLHDTYGFPI 414 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQF 457 D+ +I +GLA +D F + + +QR+RA+A + +G T+ + S+ + G +F Sbjct: 415 DLTLEIAAEQGLA-VDADGFRRLMADQRARAKADARARKTGHTDLSAYRSVLDAGGPVEF 473 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 GY ++ +E R V+A++ G+ V AV G VE+V D Sbjct: 474 TGY-----TELNRESR------------------VRAVLSGGDQVGAAVEGDTVELVLDT 510 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 TPFYAE GGQ D G G ++++ DVQ+ G+ VH A V RG +R + ID Sbjct: 511 TPFYAEGGGQQPDQGLITVGGGQVEVFDVQQPVPGLIVHRARVVRGEVRAGENGYAEIDV 570 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 RR +S +H+ATHL+H + LG +Q GS P LRFD Sbjct: 571 TRRRAISRSHTATHLVHQTMRNFLGESATQAGSLNAPGRLRFD 613 >gi|303282971|ref|XP_003060777.1| alanyl-tRNA synthetase [Micromonas pusilla CCMP1545] gi|226458248|gb|EEH55546.1| alanyl-tRNA synthetase [Micromonas pusilla CCMP1545] Length = 972 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 275/780 (35%), Positives = 431/780 (55%), Gaps = 76/780 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 + IR TFL+FF+ H ++PSS ++P +DPTL+F N+GM FK+IF G+ P Sbjct: 13 ANKIRQTFLDFFESKEHAVVPSSPVVPHDDPTLLFANAGMNQFKSIFLGKADPKGPLAKL 72 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE- 117 + T QKC+RAGGKHNDLD+VG+ HHT+FEMLGN+SFG +FK AI AW+LLT + Sbjct: 73 KRATDTQKCIRAGGKHNDLDDVGKDTYHHTYFEMLGNWSFGDFFKREAIHWAWELLTSKE 132 Query: 118 -FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + LD+ RLY + + DE EA +W ++ L +K++ DNFW M + GP Sbjct: 133 HYGLDESRLYASYFGGDESQGLPPDLEARDIWLEV--LPPNKVLPFGCEDNFWEMGDVGP 190 Query: 169 CGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 CGPCSEI +D+ GG + + + +EIWN+VF+QF ++ LP +D Sbjct: 191 CGPCSEIHYDR----IGGRDAADLVNADDPNCLEIWNIVFIQFNREEGGVLKPLPAKHVD 246 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIV 276 TGMG ER+A++LQ+K +NYD D+F + + +VTG + EG + +RV+ Sbjct: 247 TGMGFERIASILQDKMSNYDTDVFTPIFERIREVTGAPPYTGLLGAEDEGEKDMAYRVVA 306 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGS 335 DH+R+ +F IADG P ++GR YVLRR++RRA+ + R LG + L+ + G Sbjct: 307 DHIRTLTFAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAEQGFFQKLVAVVVELFGH 366 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDT 393 +PE+++ + + + + E+E FG+TL +G+ + + +D +++G AF L+++ Sbjct: 367 VFPEIVKHEKRVTDIIADEEESFGRTLLKGIDQFKKIAAKAKEDGGAVVDGAAAFLLWES 426 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 G P+D+ + + G+ +D F+ A +E + ++RA G + SL + Sbjct: 427 FGFPIDLTEIMAEENGMT-VDTAGFDAAFKEAQEKSRA-------GGKKSDGPSLLFEAE 478 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG----------VSSIVKAIVQQGEIVE 503 AT ++ + GSK+ K + + I T+ S++VKAI+ VE Sbjct: 479 ATSWLQKN---GSKWGKA-KDIAHAHDAIPFTDDSPKYDGPEADPSAVVKAILTLNGFVE 534 Query: 504 --EAVSGQKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHA-I 559 E V G + +V D+T FYAE+GGQ+ D G +G L + +V K A G +H Sbjct: 535 STEGVEG-PIGLVLDRTSFYAESGGQVCDVGVITTENGASLAVNEV-KVAAGFVLHSGER 592 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 VE + + +DY R ++ NH+ TH+L+ AL ++LG V Q GS + + LRF Sbjct: 593 VEGEAITVGNTCAARVDYDRRANIAPNHTMTHVLNFALRSVLGDGVDQKGSLVDDEKLRF 652 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRV 678 D +H+KP+++ E+K +E+ V + + +L V R + DA SG A+ G Y D VRV Sbjct: 653 DFSHNKPMSNNEIKRVEEIVRERVGASLAVDAREVALADAKTISGLRAVFGEVYPDPVRV 712 Query: 679 VSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 VSV E+ +S CGGTH+++T + ++ E+ I GIRR+ A T Sbjct: 713 VSVGPTIDELLANPGSEEWTKYSIEFCGGTHLANTSQAEGFVLLEEAGIAKGIRRVVAAT 772 >gi|195577578|ref|XP_002078646.1| GD22412 [Drosophila simulans] gi|194190655|gb|EDX04231.1| GD22412 [Drosophila simulans] Length = 948 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 307/957 (32%), Positives = 474/957 (49%), Gaps = 91/957 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R +L+FF++ H + SSS IP +DPTL+F N+GM FK IF G P + V Sbjct: 9 VRNAYLDFFKEQKHIYVHSSSTIPLDDPTLLFANAGMNQFKPIFLGTADPNSEMSKWVRV 68 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW+ LT+ L Sbjct: 69 ANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEICSWAWEFLTQRLALP 128 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY+T + + D E ++W + GL + I+ + DNFW M ETGPCGPCS Sbjct: 129 KDRLYVTYFGGDAASGLEPDLECKQMWLDL-GLKPEHILPGSMKDNFWEMGETGPCGPCS 187 Query: 174 EIFFDQ--GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 E+ FD+ G +P + + + +EIWNLVF+Q+ +++ LPK ID GMG E Sbjct: 188 ELHFDRIGGRSVPELV---NMDDPDVLEIWNLVFIQYNRESDGSLKQLPKKHIDCGMGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGM-KYEG----NNI----VNHRVIVDHLRSS 282 R+ +V+Q K +NYD DLF L A + TG Y+G +++ + +RV+ DH R+ Sbjct: 245 RLVSVIQNKRSNYDTDLFVPLFDAIQAGTGAPPYQGRVGADDVDGIDMAYRVLADHARTI 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 + +ADG P N GRGYVLRRI+RRA+ YA +P L+ + +G A+PE+ Sbjct: 305 TIALADGGTPDNTGRGYVLRRILRRAVRYATEKLNAKPGFFATLVNTVVDLLGDAFPEVK 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + I + + E+ +F KTL RG LL+ + LG + GDVA++LYDT+G P+D+ Sbjct: 365 KDPQHIIDIINEEELQFLKTLTRGRNLLNRTIEKLGNQTTIPGDVAWRLYDTYGFPVDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + + L ID+ + A + + S G G+ E+I + + +Q Sbjct: 425 QLMAEEKSLK-IDMDGYEAA----KHNSYVLSQGKGASKIEEINLDV---HAISQLQEQG 476 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGV-SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPF 520 + + K + + + GV +S + A+ + + V E SGQK +V D+T F Sbjct: 477 VPPTNDTFKYKYEAVSDERDSAYNYGVCNSKIVALRFENQFVNEITSGQKAGIVLDKTNF 536 Query: 521 YAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 YAE+GGQ+ D G + D + D G +H +VE G L+ L L ID + Sbjct: 537 YAESGGQIYDQGALVKVNDEANEFLVDRVYNRGGYILHIGVVE-GTLKVGDELELHIDVE 595 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R NHSATH L+H L +LG Q GS + P+ LRFD +T ++ E Sbjct: 596 RRWLTMKNHSATHALNHCLLQVLGKDTEQKGSLVVPEKLRFDFNSKAAMTIEQVSKTEQL 655 Query: 639 VNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCG 695 +++ +N+P+ + + A+A G ++ Y D VR + S+ Sbjct: 656 TKEMVYKNVPIYAK--ESKLALAKKIRGLRSVFDEVYPDPVRPANKP-------PSSFAA 706 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN 755 + +G IM I SE +I GIRRI A+TG A L + + + + Sbjct: 707 APTLRRSGHIMDFVISSEEAIAKGIRRIVALTGPEALKALKKSEAFEQEIVRLKATIDND 766 Query: 756 VVGR-----VEEIWE----------------EYRKL------QLIHAKRKLQLNVEDLSC 788 G+ V+EI E E R L L +R L+ V Sbjct: 767 KSGKDSKSHVKEIVELTEQISHATIPYVKKDEMRNLLKGLKKTLDDKERALRAAVSVTVV 826 Query: 789 HK---IADVNFMSHIISEV-----DSKELKSVMDALQKKIQSGIIMLVGISKE-KKASVL 839 + + + N + ++ E ++K L + + ++ ++ M + + + KK L Sbjct: 827 ERAKALCEANPNATVLVEQLEAFNNTKALDAALKQVRSQLPDAAAMFLSVDADSKKIFCL 886 Query: 840 IVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 V + +++ A + + + L GG GGG+P AQ+ G N K D+ + + F Sbjct: 887 SSVPKSAVEKGLKANEWVQHVSATL-GGKGGGKPESAQASGTNYEKVDEIVQLASKF 942 >gi|299751839|ref|XP_001830532.2| tRNA synthetase class II [Coprinopsis cinerea okayama7#130] gi|298409558|gb|EAU91282.2| tRNA synthetase class II [Coprinopsis cinerea okayama7#130] Length = 968 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 325/988 (32%), Positives = 493/988 (49%), Gaps = 133/988 (13%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R F E+F+ H + SS IP +DPTL+F N+GM +K+IF G P V +A Sbjct: 16 VREEFFEYFRARDHTFVRSSPTIPFDDPTLLFANAGMNQYKSIFLGTVDPNSELSKVKRA 75 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLT+ + L Sbjct: 76 FNS-QKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIKYSWDLLTRVYGL 134 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSM--------- 163 RLY+T ++ D EA + W + L D+++ DNFW Sbjct: 135 SPDRLYVTYFEGDPANGLEPDLEAKECW--LEYLPEDRVLPGNAKDNFWGAWCHPPELDL 192 Query: 164 ----AETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQER 216 G EI +D+ GG + +++ +EIWN VF+QF ++ Sbjct: 193 ANRRGRDGRYRSLREIHYDR----IGGRQAAHLVNQDDPDVLEIWNNVFIQFNREPDGTL 248 Query: 217 FILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN---- 271 LP +DTGMG ER+ +V+Q+K +NYD D+F + ++++G++ YEG + Sbjct: 249 KPLPAKHVDTGMGFERLVSVIQDKRSNYDTDVFTPIFAKIQELSGVRPYEGRFGADDADG 308 Query: 272 ----HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHL 325 +RV+ DH+R+ +F ++DG +P N GRGYVLRR++RR YAR LG L Sbjct: 309 IDTAYRVVADHVRTLTFALSDGGVPNNVGRGYVLRRVLRRGSRYARKKLGVPIGSFFSSL 368 Query: 326 LPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEIL 382 +P + MG +PE+ + I+E L E+E F +TLDRG L D + G+ E+ Sbjct: 369 MPVVVETMGDIFPEITKKVDDIKEILDEEEESFSRTLDRGEKLFDQYAAKAKAEGRKELS 428 Query: 383 NGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE 442 DV ++LYDT+G P+D+ + + GL GI+ F EE + +++ S G T Sbjct: 429 GADV-WRLYDTYGFPVDLTRLMAEELGL-GINDAEF----EEAQRKSKEASKGTAKKDTA 482 Query: 443 KIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG--- 499 +I + D+ + K+D T +++ VKAIV Sbjct: 483 EI-------------VKLDVHELAILEKDDSVPKTDDSAKFGTGNITATVKAIVYDKKFL 529 Query: 500 ----EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIF 554 +I E+A G V+ D+T FYAE+GGQ DTG + DG ++T+VQ G Sbjct: 530 TSTQDIPEDATFG----VILDKTSFYAESGGQEYDTGNIVIDGAADFEVTNVQ-VYNGYV 584 Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614 VH ++ G L ++ + D R L NH+ATH+L+ AL +LG HV Q GS + P Sbjct: 585 VHTGHLKYGQLDVGSEVISSYDELRRWPLRNNHTATHILNFALREVLGDHVDQKGSLVAP 644 Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYN 673 LRFD +H IT EL IE D I +N+ V + ++ A G A+ G Y Sbjct: 645 TKLRFDFSHKAGITLPELTKIESMSIDWIKKNVKVYGKDLDLNLAQKIPGLRAVFGETYP 704 Query: 674 DRVRVVSVEYEDGGVH-----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 + VRVV++EY + S CGGTHV+ TG+I I ES I GIRR Sbjct: 705 NPVRVVTLEYSVDEIAADIENPKWRQTSIEFCGGTHVAKTGDIKGFVITEESGIAKGIRR 764 Query: 723 IEAITGQRA----------------RSHLMG--QDEKLKSLASFLKVSQGNVVGRVE--- 761 I A+TG A L G +D LK+L L + +V+ + E Sbjct: 765 IIAVTGHEAAEVTRVAQALEEKLNQADALDGKAKDAALKALTVELGQADISVLKKAELKD 824 Query: 762 ------EIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN---FMSHIISEVDSKELKSV 812 + +++ K + A +K +ED H + + N +++ + + ++K L+S+ Sbjct: 825 KLNAMRKAFDKAVKEKEAAAGKKA---LEDFQKHFVENPNAQVYIALVEAGGNAKLLQSI 881 Query: 813 MDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV--LGGGGGGG 870 A +K + I + +++ K + V +L + VD + +AKV L GG GG Sbjct: 882 ATA-ARKAEKSIYVFSHDAEQGKVPHVNYVAPNL--KAQGVDARQWAAKVTDLIGGKAGG 938 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLKK 898 + AQ G +K +AIA ++K Sbjct: 939 KEESAQGVGSEASKLQEAIAAARQHVEK 966 >gi|72389797|ref|XP_845193.1| alanyl-tRNA synthetase [Trypanosoma brucei TREU927] gi|62360052|gb|AAX80474.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei] gi|70801728|gb|AAZ11634.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261328581|emb|CBH11559.1| alanyl-tRNA synthetase, putative [Trypanosoma brucei gambiense DAL972] Length = 966 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 309/971 (31%), Positives = 482/971 (49%), Gaps = 126/971 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------V 57 V+ +R F+ FF++ GH +PSS+++P NDPTL+FTN+GM FKN+F G P + Sbjct: 10 VNRVRQEFVSFFEQRGHTFVPSSAVVPHNDPTLLFTNAGMNQFKNLFLGTADPNTDFGRL 69 Query: 58 YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 +AV + Q C+RAGGKHNDLD+VGR HHTFFEMLG++SFG YFK AI +W+LLT+ Sbjct: 70 TRAVNS-QLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKREAILWSWELLTEV 128 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + L + RLY T + + DEE+ +LW ++ L A ++I DNFW M + GPC Sbjct: 129 YKLPKDRLYATYFEGDPANGIEADEESKQLWLQL--LPASRVIAGNAKDNFWEMGDVGPC 186 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI FD+ GG + +++ +E+WNLVFMQFE++ LPKM +DT Sbjct: 187 GPCSEIHFDR----IGGRDAADLVNKDDPMVLEVWNLVFMQFERRAGGVIVPLPKMHVDT 242 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI--------VNHRVIVDH 278 GMGLER+ ++LQ +NYD D + L ++VTG + + V +R + DH Sbjct: 243 GMGLERLTSILQGADSNYDTDAWTPLFDTIQKVTGFEKSYAEVRHDTCDATVAYRAVADH 302 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 +R + +ADG +P + GRG+VLRRI+RRA+ Y + LG L+ ++ + +G + Sbjct: 303 IRCLTVALADGAMPDSVGRGFVLRRIIRRAVRYGVQFLGAKVGFFHQLVDSVVSSLGPFF 362 Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 + + + + I+ L E+ F +T + GL + ++ + +++G+ AF L+D +G Sbjct: 363 KHIQEPRTVQRIKGVLADEETSFARTWETGLKHFNKAVAE-AVNNVISGENAFILHDRYG 421 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE----K 451 P+D+ +L + +D+ F+ + +A L G K + + + K Sbjct: 422 FPVDLTS-LLAEKANMSVDLEGFHATM-------KASQLSSGRVAAAKTFIDVHQLEELK 473 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 G G S + V K D +G S V ++ E+ E + Sbjct: 474 AG-----GVSPTDDSAKYTWKKHVAEVKAIFDKKSG--SFVDVLLPDSEMGPEDIG---- 522 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--KAEGIFVHHA---IVERGI-- 564 ++ D T FYAEAGGQ+ DTGC + I DV+K G VH VE G Sbjct: 523 -IILDVTNFYAEAGGQIYDTGCIV--AAPDAIFDVRKVYNVGGYIVHVGGMRSVEDGAAA 579 Query: 565 -LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPDG 616 + S+ L +DY+ R ++ NH++TH+L+ L +L V+Q GS +TP+ Sbjct: 580 PIPVTASVELQVDYERRLPIAANHTSTHILNWCLRRVLEEEAKDNFMEVNQKGSLVTPEM 639 Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYNDR 675 LRFD +++ ++ +L +E +N II Q L V + + + A +G + G KY D Sbjct: 640 LRFDFSYNNKVSLEDLIKVEKLINQIIQQGLEVYRKEIALDAASRIAGLRHMFGEKYPDP 699 Query: 676 VRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 V V+SV E E+ +S+ CGGTH+S+T + L I+SE S+ GIRR+ Sbjct: 700 VSVISVGVPVEKLIAEPESEEWRAYSTEFCGGTHLSNTQDAQLAVILSEESLMKGIRRMV 759 Query: 725 AITGQRARSHLMG----------------QDEKLKSLASFLKVSQGNVVGRV------EE 762 T AR G D KSL+ K + + V EE Sbjct: 760 VATRDAARKAQEGGKALQQEYREIMSRPASDAVAKSLSVLNKKVGDSAIPLVVKNTLREE 819 Query: 763 IWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN--------FMSHIISEVDSKE-LKSVM 813 I + + + Q+ + + A + H+ +E L++ Sbjct: 820 IDGSIKNVLGALKAQAAQMKEKATEAGRAAAEAYDASAGPLLVRHLTDTGADREALQAYA 879 Query: 814 DALQKKIQSGIIMLVGISKEKKASVLIVVTEDLL-DRFNAVDLARLSAKVLGGGGGGGRP 872 D K + + + + S E KA L+ + + + +AV A+ + G GGG+P Sbjct: 880 DGFSKAVSGDVGLFLVGSDESKALALVSLPPAFVAKKLDAVSWAKTAV-----GKGGGKP 934 Query: 873 HMAQSGGPNGN 883 AQSG P N Sbjct: 935 SAAQSGFPAAN 945 >gi|289448204|ref|ZP_06437948.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis CPHL_A] gi|289421162|gb|EFD18363.1| LOW QUALITY PROTEIN: alanyl-tRNA synthetase alaS [Mycobacterium tuberculosis CPHL_A] Length = 828 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 305/838 (36%), Positives = 454/838 (54%), Gaps = 57/838 (6%) Query: 89 FFEMLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKI 143 FF+M NFSFG YFK AI+LAW LLT + LD R++ TVY +D+EA +LW+++ Sbjct: 7 FFQMGRNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEV 66 Query: 144 SGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGERYIEIWN 202 +GL A++I R DN+WSM GPCGP SEI++D+G E P G P SE+ RY+E+WN Sbjct: 67 AGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWN 124 Query: 203 LVFMQFE------QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQAS 256 LVFMQ E +++ Q LP+ +IDTGMG+ER+A VLQ+ N Y+ DL + ++ Sbjct: 125 LVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVLDTV 184 Query: 257 EQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR 313 +V Y+ GN + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR + A+ Sbjct: 185 ARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAK 244 Query: 314 LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVL 373 LLG ++ L+ + MG +YPEL+ I +E+ F +TL G L + V Sbjct: 245 LLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVA 304 Query: 374 SHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431 S K +L+G AF L+DT+G P+++ ++ GL +D I F + + EQR RA+A Sbjct: 305 SSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGLQ-VDEIGFRELMAEQRRRAKA 363 Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491 + + + GAT+F G+D LR S+ V ++ P+ + +GV+ Sbjct: 364 DAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQARILGIFVDGKRVPV-VAHGVAG- 420 Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQ 547 A GQ+VE+V D+TP YAE+GGQ+ D G G G R +TDVQ Sbjct: 421 ------------GAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQ 468 Query: 548 KKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQ 607 K A+ ++VH VE G +++ +D RR + HS TH++H AL +LG + Q Sbjct: 469 KIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQ 528 Query: 608 NGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL 667 GS P LRFD P+T + +E+ N+ + + V T + A A GA AL Sbjct: 529 AGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIAL 588 Query: 668 LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 G Y D VRVV E GG S LCGGTHVS+T +I + I+ ESSI +G+RR+EA Sbjct: 589 FGESYPDEVRVV----EMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYV 644 Query: 728 GQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQLIH-AKRKLQLN 782 G + HL + + LAS LKV V RV + E R +L+ + A + Sbjct: 645 GLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASVRAAAT 704 Query: 783 VEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIV 841 +I +V ++ +S + + +L+S++ ++ K+ S ++ I++ + +V Sbjct: 705 NAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYA 764 Query: 842 V-----TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 V +DL R N DL + A + G GGG+ +AQ G N D A+ V S Sbjct: 765 VAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAVRS 819 >gi|221485680|gb|EEE23961.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii GT1] Length = 1037 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 287/838 (34%), Positives = 416/838 (49%), Gaps = 107/838 (12%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPV--YQA 60 ++R +LEFF+ GH + PSS +IP D TL+F N+GM FK IF GQ P+ + Sbjct: 28 AVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSKLRR 87 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG YFK AI AW LLT+ + + Sbjct: 88 VADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEVYKI 147 Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 + RLY + + DEEA +W + L A++++ +NFW MA+TGPCGP Sbjct: 148 PKDRLYASYFGGDPRLPSCPPDEEARDIW--LQYLPANRVLPFGAKENFWEMADTGPCGP 205 Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ GG SS + +EIWNLVFMQ+ ++ LP +DTGM Sbjct: 206 CSEIHYDR----IGGRDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261 Query: 229 GLERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI---------VNHRVIVDH 278 GLER+A+VLQ+K +NYD DLF L + E G++ G + + +RV+ DH Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337 R + IADG P+NEGRGYVLRRI+RRA+ YAR LG E L+P + + +G + Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395 PE+ + + + L E+++F +TLD G+ V + L ++ G AF LY T+G Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG-------TTEKIWFSL 448 PLD+ Q + GL +D F + + R+ + S G ++ + Sbjct: 442 FPLDLTQLMAEEVGLQ-VDAEEFERKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQ 500 Query: 449 KEKYGATQFIG---YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505 K T ++++ + M +D + PI K + V Sbjct: 501 SRKVPPTDDSAKYEWNVMNQAALMTQD---AVEAAPIKAKVMAIWDGKRFAPEVTAVASP 557 Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563 V V+ D+T FYAE GGQ+GD G + ++ D QK + I +H + +G Sbjct: 558 TGENLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGDFI-LHIGSMSKG 616 Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL---------------------- 601 LR LV +DY R +L+ +H+ THLL+ AL +L Sbjct: 617 TLREGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNG 676 Query: 602 ---------------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 G + Q GS + LRFD KP+ + ++ ++E+ V D IAQ Sbjct: 677 LRICESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQA 736 Query: 647 LPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-------------EYEDGGVHSSA 692 PV + + E A+ G A+ G Y D VRVVSV + S Sbjct: 737 RPVHYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIE 796 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRI---EAITGQRARSHLMGQDEKLKSLAS 747 LCGGTH+ + ++ I+SE S+ G+RR+ AR L +E +SLAS Sbjct: 797 LCGGTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLAS 854 >gi|221502948|gb|EEE28658.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii VEG] Length = 1037 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 287/838 (34%), Positives = 416/838 (49%), Gaps = 107/838 (12%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPV--YQA 60 ++R +LEFF+ GH + PSS +IP D TL+F N+GM FK IF GQ P+ + Sbjct: 28 AVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSKLRR 87 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG YFK AI AW LLT+ + + Sbjct: 88 VADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEVYKI 147 Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 + RLY + + DEEA +W + L A++++ +NFW MA+TGPCGP Sbjct: 148 PKDRLYASYFGGDPRLPSCPPDEEARDIW--LQYLPANRVLPFGAKENFWEMADTGPCGP 205 Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ GG SS + +EIWNLVFMQ+ ++ LP +DTGM Sbjct: 206 CSEIHYDR----IGGRDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261 Query: 229 GLERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI---------VNHRVIVDH 278 GLER+A+VLQ+K +NYD DLF L + E G++ G + + +RV+ DH Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337 R + IADG P+NEGRGYVLRRI+RRA+ YAR LG E L+P + + +G + Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395 PE+ + + + L E+++F +TLD G+ V + L ++ G AF LY T+G Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG-------TTEKIWFSL 448 PLD+ Q + GL +D F + + R+ + S G ++ + Sbjct: 442 FPLDLTQLMAEEVGLQ-VDAEEFKRKFDAHRAASENTSFKQGGAGAVYALPPDQRHLLAQ 500 Query: 449 KEKYGATQFIG---YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505 K T ++++ + M +D + PI K + V Sbjct: 501 SRKVPPTDDSAKYEWNVMNQAALMTQD---AVEAAPIKAKVMAIWDGKRFAPEVTAVASP 557 Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563 V V+ D+T FYAE GGQ+GD G + ++ D QK + I +H + +G Sbjct: 558 TGENLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDSQKSGDFI-LHIGSMSKG 616 Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL---------------------- 601 LR LV +DY R +L+ +H+ THLL+ AL +L Sbjct: 617 TLREGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLRSGGKASANGDKREDTNG 676 Query: 602 ---------------GSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQN 646 G + Q GS + LRFD KP+ + ++ ++E+ V D IAQ Sbjct: 677 IRICESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLENEDIIAVENVVKDCIAQA 736 Query: 647 LPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-------------EYEDGGVHSSA 692 PV + + E A+ G A+ G Y D VRVVSV + S Sbjct: 737 RPVHYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESLVALADSSQPETPFASIE 796 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRI---EAITGQRARSHLMGQDEKLKSLAS 747 LCGGTH+ + ++ I+SE S+ G+RR+ AR L +E +SLAS Sbjct: 797 LCGGTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEARKELEELEEAFRSLAS 854 >gi|237842821|ref|XP_002370708.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49] gi|211968372|gb|EEB03568.1| alanyl-tRNA synthetase, putative [Toxoplasma gondii ME49] Length = 1037 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 295/855 (34%), Positives = 419/855 (49%), Gaps = 141/855 (16%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ---EKPV--YQA 60 ++R +LEFF+ GH + PSS +IP D TL+F N+GM FK IF GQ P+ + Sbjct: 28 AVRGAYLEFFEAQGHLIYPSSPVIPRGDNTLLFINAGMNQFKPIFLGQIDRSSPLSKLRR 87 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+RAGGKHNDL++VG+ HHTFFEMLGN+SFG YFK AI AW LLT+ + + Sbjct: 88 VADTQKCIRAGGKHNDLEDVGKDVYHHTFFEMLGNWSFGDYFKREAIAWAWQLLTEVYKI 147 Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 + RLY + + DEEA +W + L A++++ +NFW MA+TGPCGP Sbjct: 148 PKDRLYASYFGGDPRLPSCPPDEEARDIW--LQYLPANRVLPFGAKENFWEMADTGPCGP 205 Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ GG SS + +EIWNLVFMQ+ ++ LP +DTGM Sbjct: 206 CSEIHYDR----IGGRDASSLVNADDPSVLEIWNLVFMQYNREKDGSLTPLPAPCVDTGM 261 Query: 229 GLERMATVLQEKTNNYDIDLFKHLI-QASEQVTGMKYEGNNI---------VNHRVIVDH 278 GLER+A+VLQ+K +NYD DLF L + E G++ G + + +RV+ DH Sbjct: 262 GLERVASVLQDKQSNYDTDLFTALFDKILELSPGLRPYGGKVGEEDKDMVDMAYRVLADH 321 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337 R + IADG P+NEGRGYVLRRI+RRA+ YAR LG E L+P + + +G + Sbjct: 322 ARCLTAAIADGAEPSNEGRGYVLRRILRRAVRYARQTLGMAEGNFPKLVPVVVSLLGETF 381 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHG 395 PE+ + + + L E+++F +TLD G+ V + L ++ G AF LY T+G Sbjct: 382 PEMKKNEEKVVRILLKEEQQFSRTLDNGVERFKKVANSLQAKGQKVFPGGEAFTLYSTYG 441 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 PLD+ Q + GL +D F + + R+ + S G GA Sbjct: 442 FPLDLTQLMAEEVGLQ-VDAEEFERKFDAHRAASENTSFKQGGA-------------GAV 487 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVK--AIVQQGEIVEEAVSGQK--- 510 + D + + RKV PP D + VK A + + VE A K Sbjct: 488 YALPPD---QRHLLAQSRKV----PPTDDSAKYEWNVKDQAALMTQDAVEAAPIKAKVMA 540 Query: 511 ----------------------VEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDV 546 V V+ D+T FYAE GGQ+GD G + ++ D Sbjct: 541 IWDGKRFAPEVTAVASPTGENLVAVILDKTCFYAEQGGQIGDVGRLVDLSSQAEFEVVDS 600 Query: 547 QKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL----- 601 QK + I +H + +G LR LV +DY R +L+ +H+ THLL+ AL +L Sbjct: 601 QKSGDFI-LHIGSMSKGTLREGTELVPAVDYVRRFRLAQHHTGTHLLNFALREVLIRKLR 659 Query: 602 --------------------------------GSHVSQNGSCITPDGLRFDVTHSKPITS 629 G + Q GS + LRFD KP+ + Sbjct: 660 SGGKASANGDKREDTNGIRICESCLNEKELEDGEDIQQKGSLVEVKRLRFDYAGEKPLEN 719 Query: 630 AELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV------- 681 ++ ++E+ V D IAQ PV + + E A+ G A+ G Y D VRVVSV Sbjct: 720 EDIIAVENVVKDCIAQARPVHYKEVPLEQAMKIPGLRAVFGEVYPDPVRVVSVGEDIESL 779 Query: 682 ------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI---EAITGQRAR 732 + S LCGGTH+ + ++ I+SE S+ G+RR+ AR Sbjct: 780 VALADSSQPETPFASIELCGGTHLHNASQLSDFCILSEESVAKGVRRVVAAAGDAAFEAR 839 Query: 733 SHLMGQDEKLKSLAS 747 L +E +SLAS Sbjct: 840 KELEELEEAFRSLAS 854 >gi|308485186|ref|XP_003104792.1| CRE-AARS-2 protein [Caenorhabditis remanei] gi|308257490|gb|EFP01443.1| CRE-AARS-2 protein [Caenorhabditis remanei] Length = 966 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 314/990 (31%), Positives = 486/990 (49%), Gaps = 133/990 (13%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------ 56 S +R+TF+ FF +K H + SSS+IP +DPTL+F N+GM FK +F G P Sbjct: 6 ASEVRSTFINFFKEKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLAK 65 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + +AV T QKC+RAGGKHNDLD+VG+ HHT+FEMLGN+SFG YFK+ I AW+LLT Sbjct: 66 LKRAVNT-QKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLTT 124 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + RLY++V+ DE EA ++W+ + G+ ++I+ DNFW M + GP Sbjct: 125 VYGIPSERLYVSVFGGDEATGVPADSEAREIWRSV-GVPDERILNFGMKDNFWEMGDVGP 183 Query: 169 CGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CGPCSEI +D+ G L + + +EIWNLVF+QF ++ LP ID G Sbjct: 184 CGPCSEIHYDRIGNRDASHLVNADD--PMVVEIWNLVFIQFNREEGGSLKTLPAKHIDCG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGN--------NIVNHRVIVDH 278 +GLER+ V+Q+KT+NYD D+F+ + QA + +G++ Y G+ + +RV+ DH Sbjct: 242 LGLERLIAVMQDKTSNYDTDIFQPIFQAINKGSGVRAYTGHIGDDDKDGIDMAYRVVADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337 +R+ + ++DG P N GRGYVLRRI+RR + YA +P L+P + + +G + Sbjct: 302 IRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYATEKLNAQPGFFASLVPVVISILGETF 361 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGL 396 PEL + + + + E+++F KTL RG VL + L + GDVA++LYDT+G Sbjct: 362 PELSRDPETVMDIINDEEKQFLKTLSRGRVLFQRAVDSLPAGTKTFPGDVAWRLYDTYGF 421 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P D+ Q + +GL+ +D+ +F + AR ++ S T K +L A Sbjct: 422 PADLTQLMAEEKGLS-VDLTAFEE--------ARKKAIETSSAGTGKFRDTLDLDVHALA 472 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLT-NGVSSIVK---------AIVQQGEIVEEAV 506 DL + +D K T G ++ K AI + G+ V+E V Sbjct: 473 ----DLQQKGVPTTDD----TPKYAYSFTGEGADAVYKFEPCVGKILAIRRDGKFVDELV 524 Query: 507 SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL- 565 +G++ ++ D+T FYAE GGQ+ D G +T V ++ V + V G + Sbjct: 525 AGEEGAILLDRTNFYAEQGGQIYDVGV---------LTKVNDESNEFNVSNCQVRGGYIV 575 Query: 566 ---RTEMSLVLTIDY-----QNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDG 616 +E + + D ++R+QL + NH+ TH+L++AL +L Q GS + PD Sbjct: 576 LVGSSEGNFKIGDDVNQRFDEDRKQLIMKNHTGTHVLNYALRKVLADS-DQKGSLVAPDR 634 Query: 617 LRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDR 675 +RFD T+ +TS ++K E+ +I V + DA +G A+ Y D Sbjct: 635 MRFDFTNKAAMTSEQVKQAEEYAQQLINTKGQVYAKNSPLADAKKINGLRAMFDETYPDP 694 Query: 676 VRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIE 724 VRVV+V + +G + CGGTH+ + I + I SE +I GIRRI Sbjct: 695 VRVVAVGTSVEQLLQNPDAPEGQNTTVEFCGGTHLQNVSHIGRIVISSEEAIAKGIRRIV 754 Query: 725 AITGQRA----------------------RSHLMGQDEKLKS----------------LA 746 A+TG A L+ +K K L Sbjct: 755 ALTGPEADRAIARADRLEARLVEESKHAKNQELLANKDKFKELQKKIQEIVDEANGALLP 814 Query: 747 SFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 S+ K S V++ + Y K Q K+ ++L+ + S +S Sbjct: 815 SWRKDSLRKKAKDVQKDMDGYSKAQQAAVAEKVLGEAKELAAASEQPAVLVHVFTSNANS 874 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEK-KASVLIVVTEDLLDRFNAVDLARLSAKVLGG 865 K + + + L+ + +M ++++ K L V + L+ A + VL G Sbjct: 875 KAIDNALKLLK---DTKAVMAFSVNEDTGKVLCLAKVDKSLVSSLKANEWVNEVCTVL-G 930 Query: 866 GGGGGRPHMAQSGGPNGNKADQAIAGVASF 895 G GGG+ AQ G N +K D A+ F Sbjct: 931 GKGGGKDANAQLTGENVDKLDAAVELAQKF 960 >gi|302506663|ref|XP_003015288.1| hypothetical protein ARB_06411 [Arthroderma benhamiae CBS 112371] gi|291178860|gb|EFE34648.1| hypothetical protein ARB_06411 [Arthroderma benhamiae CBS 112371] Length = 954 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 321/968 (33%), Positives = 492/968 (50%), Gaps = 115/968 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R TFL++F+KNGH +PSSS++P +DPTL+F N+GM +K+IF G P + + Sbjct: 23 VRDTFLDYFKKNGHTFVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPN----SDFAQ 78 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 RA DLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD RLY Sbjct: 79 LKRAHNSQKDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLDPDRLY 138 Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T ++ +E EA +W+ + G+ D I+ DNFW M + GPCGPCSEI +D Sbjct: 139 VTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCSEIHYD 197 Query: 179 QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + GG + +++ +EIWN VF+Q+ ++ + LP +DTG+G ER+ + Sbjct: 198 R----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERLVS 253 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLI 286 +LQ K++NYD D+F L A + +TG + Y G + I +RV+ DHLR+ +F I Sbjct: 254 ILQNKSSNYDTDVFTPLFNAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTFAI 313 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAK 344 DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE+ + + Sbjct: 314 TDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIKRKQ 373 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDEILNGDVAFKLYDTHGLPLD 399 + E L E+ F KTLDRG + S GK L+G ++LYDT G P+D Sbjct: 374 TDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGK---LHGADVWRLYDTFGFPVD 430 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-----EKYGA 454 + + + R L ID F EE R +A+ S G ++ + ++ EK G Sbjct: 431 LTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKTASDLLKLTVHTLSTLEKNGV 485 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKV 511 + +KF K + + +KAI E+++ + + +++ Sbjct: 486 PK-----TDDDAKFGK---------------GNIVANIKAICHGKEVIDSTKDIPANEQI 525 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 ++ D+T FYAE GGQ DTG + DG L + +VQ G +H ++ G S Sbjct: 526 GIILDKTNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYG-GYVLHTGFIKYGNFSVNDS 584 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 ++ D R + NH+ TH+L+ AL +LG + Q GS + + LRFD +H I+ + Sbjct: 585 VIAEYDELRRWPIRNNHTGTHILNFALREVLGDGIDQKGSLVAAEKLRFDFSHKSAISDS 644 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH 689 +L+ IE D I QN V ++ + A +G A+ G Y D VRVVSV E + Sbjct: 645 DLEKIEAKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEIL 704 Query: 690 -----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------- 731 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 705 KNVKDPRWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRVA 764 Query: 732 --------RSHLMG----QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLI 773 R M +D ++KSL L V + + +I ++ Q Sbjct: 765 REFGERLNRFEKMPAGPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKA 824 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIMLVGIS 831 K +++ ++ +S + + + S +I + K++ ++L K SG + V + Sbjct: 825 AQKAEVKTAIDAISAYFEENKDSPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAA 884 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K + VT DL + +A + A + ++GG GG P +A G NK D+A+ Sbjct: 885 DASKVAHGCYVTPDLTTKGASANEWASAVSSIVGGKAGGKAP-VAIGNGTEVNKVDEALD 943 Query: 891 GVASFLKK 898 +L+K Sbjct: 944 EATKYLEK 951 >gi|298368683|ref|ZP_06980001.1| alanine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314] gi|298282686|gb|EFI24173.1| alanine--tRNA ligase [Neisseria sp. oral taxon 014 str. F0314] Length = 1021 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/383 (53%), Positives = 268/383 (69%), Gaps = 11/383 (2%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRAYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KEKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + + +VI DH+RS SFLI+DG++P+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAPFSMDE-PSLKVIADHIRSCSFLISDGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + IEE L++ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQAQIEEALKN 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHL 376 E+ RFG+TL+ GL L D LS + Sbjct: 362 EESRFGQTLETGLKLFDDELSKV 384 Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 177/530 (33%), Positives = 275/530 (51%), Gaps = 59/530 (11%) Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS--FNQALEEQRSRARAHSLGLGSG 439 L G+ FKLYDT+G P D+ D+ AR L GID+ FN+ +E QR+RARA Sbjct: 535 LAGETIFKLYDTYGFPYDLTADM--AREL-GIDLDEEGFNREMEAQRARARAAQ------ 585 Query: 440 TTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499 K L T+F GY+ ++ K++ A+ + Sbjct: 586 -NFKANAQLDYTGADTEFTGYEK------RSQETKII-----------------ALYKGS 621 Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559 E V+E +G+ VV +QTPFYAE+GGQ+GD G R ++ D QK + Sbjct: 622 EAVDELQAGEAGVVVLEQTPFYAESGGQVGDVGFIFAGENRFRVEDTQKIKAAVHGQFGA 681 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 V G L+ ++ ID R + NHS THL+H AL +LG+HV Q GS + RF Sbjct: 682 VVSGRLKVGDAVSAEIDNDIRDSIMRNHSVTHLMHKALRDVLGTHVEQKGSLQNAELTRF 741 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 D++H + I++ E+ +E VN I N+PV M+ EDA SGA L G KY D VRV+ Sbjct: 742 DISHPQGISAEEIAEVERRVNAAIIANVPVKVETMSIEDAQKSGAMMLFGEKYGDFVRVI 801 Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 ++ G +S+ LCGGTHV+ TG+I I+SE I AGIRR+EAITG A + Q+ Sbjct: 802 TM-----GDYSTELCGGTHVARTGDIGFFKIISEGGIAAGIRRVEAITGLAALAWAQNQE 856 Query: 740 EKLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSC 788 +K++ + +K ++ +V+ +++ + L+ +HA KL + +DL Sbjct: 857 SLMKNIIAEVKAQTEKDVLAKIQANAANTKALEKELAKAKAELAVHAGAKLLDSAKDLGA 916 Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848 K+ S I E D+ L+ ++ L K + +I+L ++ + K S+ V++ L + Sbjct: 917 AKLV----ASQI--EADAAALREIVTDLTGKSDNAVILLAAVN-DGKVSLCAGVSKPLTN 969 Query: 849 RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + A DL + +A+ + GG GGGRP +AQ+GG + K + + V ++ + Sbjct: 970 KVKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAVKLPEMLGSVEGWVSR 1018 >gi|319638074|ref|ZP_07992838.1| alanyl-tRNA synthetase [Neisseria mucosa C102] gi|317400719|gb|EFV81376.1| alanyl-tRNA synthetase [Neisseria mucosa C102] Length = 964 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 205/383 (53%), Positives = 270/383 (70%), Gaps = 11/383 (2%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TTELRQKFLKFFESKGHTIVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYNRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ A++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPAERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+P L EMG+AYPEL + + I E LR+ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKEMGAAYPELKEKQTQIMEALRA 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHL 376 E+ RFG+TL++G+ L + VL+ + Sbjct: 362 EESRFGETLEKGMGLFNQVLNGM 384 Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 176/527 (33%), Positives = 270/527 (51%), Gaps = 55/527 (10%) Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440 ++ G+ FKLYDT+G P D+ D+ G+ +D F + +E QR+RARA Sbjct: 477 VIGGEHIFKLYDTYGFPYDLTADMARELGIE-LDEAGFEREMEAQRARARAAQ------- 528 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 + K L + T+F GY +R+ S V A+ + GE Sbjct: 529 SFKANAQLPYEGQDTEFKGYS----------ERQT-------------ESKVLALYKDGE 565 Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560 V+E G + VV D TPFYAE+GGQ+GD G R ++ D QK +F + Sbjct: 566 QVDELNEGDEGAVVIDFTPFYAESGGQVGDVGYIFAGENRFEVRDTQKIKAAVFGQFGVQ 625 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 G L+ S+ +D + R NHSATHL+H AL +LG HV Q GS +T + RFD Sbjct: 626 TSGRLKVGDSVTAKVDDEIRNANMRNHSATHLMHKALRDVLGEHVEQKGSLVTAESTRFD 685 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680 ++H + +T+ E+ +E VN+ I N+ V IM+ EDA +GA L G KY D VRV+ Sbjct: 686 ISHPQAVTAEEIAEVERRVNEAILANVAVNAAIMSMEDAQKTGAMMLFGEKYGDEVRVLQ 745 Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 + G S+ LCGGTHVS TG+I L I+SE I AG+RRIEAITG A Q+ Sbjct: 746 M-----GGFSTELCGGTHVSRTGDIGLFKIISEGGIAAGVRRIEAITGLNALKWAQEQER 800 Query: 741 KLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCH 789 +K + + K ++ +V+ +++ + L+ +HA KL + +DL Sbjct: 801 LVKDIIAETKAQTEKDVLAKIQAGAAHAKALEKELARAKAELAVHAGAKLLDDAKDLGAA 860 Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849 K+ E D+ L+ ++ L K + I++LV ++ + K S+ V++ L + Sbjct: 861 KLV------AAQIEADAAALREIVTDLTGKSEQAIVLLVAVN-DGKVSLCAGVSKPLTGK 913 Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 A DL + +A+ + GG GGGRP +AQ+GG + +K + + V ++ Sbjct: 914 VKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDADKLPEMLVSVEGWV 959 >gi|260201682|ref|ZP_05769173.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T46] Length = 819 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 303/835 (36%), Positives = 450/835 (53%), Gaps = 57/835 (6%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGL 146 M GNFSFG YFK AI+LAW LLT + LD R++ TVY +D+EA +LW++++GL Sbjct: 1 MAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGL 60 Query: 147 SADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGERYIEIWNLVF 205 A++I R DN+WSM GPCGP SEI++D+G E P G P SE+ RY+E+WNLVF Sbjct: 61 PAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVF 118 Query: 206 MQFE------QQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQV 259 MQ E +++ Q LP+ +IDTGMG+ER+A VLQ+ N Y+ DL + +I +V Sbjct: 119 MQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARV 178 Query: 260 TGMKYE-GN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLG 316 Y+ GN + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR + A+LLG Sbjct: 179 AARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLG 238 Query: 317 YTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL 376 ++ L+ + MG +YPEL+ I +E+ F +TL G L + V S Sbjct: 239 IDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASST 298 Query: 377 GKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSL 434 K +L+G AF L+DT+G P+++ ++ GL +D I F + + EQR RA+A + Sbjct: 299 KKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGLQ-VDEIGFRELMAEQRRRAKADAA 357 Query: 435 GLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKA 494 + + GAT+F G+D LR S+ V ++ P+ + +GV+ Sbjct: 358 ARKHAHADLSAYRELVDAGATEFTGFDELR-SQARILGIFVDGKRVPV-VAHGVAG---- 411 Query: 495 IVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKA 550 A GQ+VE+V D+TP YAE+GGQ+ D G G G R +TDVQK A Sbjct: 412 ---------GAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIA 462 Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGS 610 + ++VH VE G +++ +D RR + HS TH++H AL +LG + Q GS Sbjct: 463 KTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGS 522 Query: 611 CITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT 670 P LRFD P+T + +E+ N+ + + V T + A A GA AL G Sbjct: 523 LNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGE 582 Query: 671 KYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR 730 Y D VRVV E GG S LCGGTHVS+T +I + I+ ESSI +G+RR+EA G Sbjct: 583 SYPDEVRVV----EMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLD 638 Query: 731 ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKL-----QLNVED 785 + HL + + LAS LKV V RV + E R + + ++ Sbjct: 639 SFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAA 698 Query: 786 LSCHKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV-- 842 +I +V ++ +S + + +L+S++ ++ K+ S ++ I++ + +V V Sbjct: 699 AGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAA 758 Query: 843 ---TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +DL R N DL + A + G GGG+ +AQ G N D A+ V S Sbjct: 759 NPAAQDLGIRAN--DLVKQLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAVRS 810 >gi|291229512|ref|XP_002734712.1| PREDICTED: alanyl-tRNA synthetase-like [Saccoglossus kowalevskii] Length = 974 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 331/984 (33%), Positives = 506/984 (51%), Gaps = 132/984 (13%) Query: 7 IRTTFLEFFQ-KNG--HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 IR F++FF+ K G HE +PS+S++P +DPTL+FTN+GM FK IF G P + Sbjct: 8 IRQGFIDFFRNKKGLEHEFVPSNSVVPLDDPTLLFTNAGMNQFKPIFQGVVDPNSDMAKW 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ ++AW+LLT + Sbjct: 68 VRVANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEVCEMAWELLTDVW 127 Query: 119 DLDQRRLYITVY--DE------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T + DE DEE ++W I GL ++++ + DNFW M + GPCG Sbjct: 128 KLPKERLYVTYFGGDEKMGLGPDEECKQIWIDI-GLPPERVLPFSMRDNFWEMGDVGPCG 186 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI FD+ GG + + + +E+WNLVFMQF ++ LPK +ID G Sbjct: 187 PCSEIHFDR----IGGRDATHLVNMDDPNVLELWNLVFMQFNREPDGSIRPLPKKNIDCG 242 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278 MGLER+ +VLQ K +NYD D+F A + TG++ Y+G + I + +RV+ DH Sbjct: 243 MGLERVISVLQGKMSNYDTDIFTPFFDAIHKGTGVREYQGKVGSEDTDGIDMAYRVVADH 302 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 +R+ + I+DG P N GRGYVLRR++RR + YA L L+ + +G A+ Sbjct: 303 IRTLTIAISDGGRPDNVGRGYVLRRVLRRGVRYATEKLNAPSGFFASLVQVVLDTLGDAF 362 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 P + + L+ + + E+ +F KTL+RG +L ++ L + ++L G A+ LYDT+G P Sbjct: 363 PGIKKDPQLVIDIINEEEAQFLKTLNRGHRVLQRTINKL-ETKVLPGKAAWLLYDTYGFP 421 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKIWFSLKEKYGATQ 456 +D+ Q + GL I + EE++ + R S G GSG + Sbjct: 422 VDLTQLMAEENGLN----IDMGEYEEEKKKKLRFLLSQGKGSGVDDT------------- 464 Query: 457 FIGYDLLRGSKFMKEDRKVLC--QKPPIDLT----------NGVSSIVKAIVQQGEIVEE 504 IG D+ S+ +++ RKV P T N + + V A+ + + V E Sbjct: 465 -IGLDVHAISE-LQDTRKVSATDDSPKYSYTYDEQNSKYVFNAIVATVIALRKDKQFVSE 522 Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG---IRLQITDVQKKAEGIFVH----H 557 +G + ++ D+T FYAE GGQ+ D G + I ++T+VQ K G +H Sbjct: 523 VDNGDECGMLLDKTCFYAEQGGQIWDEGFMEKENNPDIEFKVTNVQVKG-GYILHIGKLS 581 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 A+ G L+ + L ID RR + NH+ TH+L++AL +LG Q GS + PD L Sbjct: 582 AVDSEGKLKVGDKMKLYIDEARRRPIMSNHTGTHMLNYALRKVLG-EADQKGSLVAPDKL 640 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLGTKYND 674 RFD T +T+ +++S E N+++ ++ PV + N A+A G A+ Y D Sbjct: 641 RFDFTAKGAMTTEQVQSAEQITNEMVQKSQPVYAK--NSPLAVAKAIQGLRAVFDEVYPD 698 Query: 675 RVRVVS--VEYED---------GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 VRV+S + ED G S CGGTH+ ++G I IV+E +I GIRRI Sbjct: 699 PVRVISIGIPVEDMEADPSGPAGATTSIEFCGGTHLLNSGHIGPFVIVTEEAIAKGIRRI 758 Query: 724 EAITGQRARSHLMGQD---EKLKSLASFLKVSQGNVVGRVEEIWEE-------------- 766 AITG A+ + D E++ L +K + V +E+ +E Sbjct: 759 VAITGDDAQKAINRADMLEEEIDKLTQKIKDNSTKQVYMPKELSKEIVSIGDDLNVAIVP 818 Query: 767 -YRKLQLIHAKRKLQLNVEDLSCHK----IADVNFMSH-----------IISEVDSKELK 810 +RK + + L+ ++DL + I +V M+ ++ +D+ Sbjct: 819 QWRKDGMRKKLKDLKKIMDDLDKARKAAIIQNVKEMTKKLIEEKPNQPLVVMTLDADSNS 878 Query: 811 SVMDALQKKIQS----GIIMLVGISKEKKASVLI--VVTEDLLDRFNAVDLARLSAKVLG 864 +DA K+ ++ ML + +E + + + V E + A + R + L Sbjct: 879 KALDAALKEYRNLSPQTAAMLFSVDRENRKIICLCHVPQEGIAKGLKAGEWVRHVSSSL- 937 Query: 865 GGGGGGRPHMAQSGGPNGNKADQA 888 G GGG+ AQ+ G N N D+A Sbjct: 938 NGKGGGKDSSAQASGDNINGLDEA 961 >gi|224001280|ref|XP_002290312.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335] gi|220973734|gb|EED92064.1| alanine-trna ligase [Thalassiosira pseudonana CCMP1335] Length = 966 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 278/780 (35%), Positives = 416/780 (53%), Gaps = 83/780 (10%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV----- 61 +R+TF+ +F++NGH SS +P +DPTL+FTN+GM +K +F G P + Sbjct: 19 VRSTFISYFERNGHTFWRSSPCVPHDDPTLLFTNAGMNQYKPLFLGTCDPALKMASLKRA 78 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI++AW LT+EF LD Sbjct: 79 TNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEAIEMAWKCLTEEFKLD 138 Query: 122 QRRLYITVY--DE----DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RLY T + DE D+EA ++W + L A++++ DNFW M TGPCGPC+EI Sbjct: 139 PNRLYATYFGGDESTPCDDEAREIW--LQYLPAERVLPFDAKDNFWEMGATGPCGPCTEI 196 Query: 176 FFDQ------GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +D+ + + LP IEIWN VF+QF ++ LP +DTGMG Sbjct: 197 HYDRIGNRDASKLVNADLP-------DVIEIWNNVFIQFNREADGSLRPLPAQHVDTGMG 249 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLR 280 ER+ ++LQ +NYD D+F L A +++TG + I + +RV+ DH+R Sbjct: 250 FERLTSILQGVDSNYDTDIFIPLFDAIQKITGARPYAGKIEKEDPEFIDMAYRVVADHVR 309 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYPE 339 + SF IADG +P+N+GRGYVLRR++RRA+ Y R L L+ L MG +PE Sbjct: 310 TLSFAIADGAVPSNDGRGYVLRRVLRRAVRYGRQNLNAELGFFAQLVRTLVELMGDTFPE 369 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + + + +R E+E F KT+D+G+V + LG ++ G+ A LY + G P+D Sbjct: 370 LREKEEYVTAIIREEEESFSKTVDKGIVEFNKRCDALGDVKVFPGEDAHFLYTSMGFPVD 429 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 + + + RGL +D+ ++ ++E++ + A L S + K + E+ Sbjct: 430 LTELMCEERGLT-LDMEGYDAKMKEEQELSNAAHLAKMSAGSGKDMRLVAEQ------TS 482 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAI------VQQGEIVEEAVSGQK--V 511 + + +G +D K + + DL SI+KA+ + G +++S + V Sbjct: 483 HLVNKGVDATNDDAKYVWNE---DLE---GSIIKALFIGRNETEDGIGFVDSISKENGAV 536 Query: 512 EVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHH-AIVERGILRTEM 569 +V D+T FY E+GGQ DTG G ++IT+VQ G FV H V G + Sbjct: 537 GIVLDKTNFYGESGGQTFDTGSIKTSSGATIEITNVQ--IYGSFVLHIGDVTEGTVTVND 594 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTIL---------GSHVSQNGSCITPDGLRFD 620 + +DY R ++ NH+ TH+L+ AL +L G+ V Q GS + + LRFD Sbjct: 595 AATCCVDYVRRAPIAANHTMTHILNFALRDVLVTRGDADQHGASVDQKGSLVDENKLRFD 654 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679 + S P+T +L ++E D I +PV + E A S A+ G Y D VRVV Sbjct: 655 FSWSGPLTPEQLVAVEKICVDQINSAVPVDNYVAPLEGAQQISSLRAVFGEVYPDPVRVV 714 Query: 680 SV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 +V + +S CGGTH+ +T E ++SE I G+RRI +T Sbjct: 715 AVSPSPITSMLENPQDAQWNKYSVEFCGGTHLKNTSEAQGFVLLSEEGIAKGVRRITGVT 774 >gi|229545937|ref|ZP_04434662.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1322] gi|229309005|gb|EEN74992.1| alanyl-tRNA synthetase [Enterococcus faecalis TX1322] Length = 741 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 295/785 (37%), Positives = 440/785 (56%), Gaps = 75/785 (9%) Query: 140 WKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI-------PGGLPGSSE 192 W+ GLS D II + DNFW + GP GP +EIF+D+GE P PG Sbjct: 1 WRDEVGLSEDHIIDV--EDNFWDIG-AGPSGPDTEIFYDRGEEFLDIPEDDPENYPGG-- 55 Query: 193 EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHL 252 E ERY+EIWNLVF +F + LP +IDTGMGLER+ +++Q+ N++ DLF + Sbjct: 56 ENERYLEIWNLVFSEFNHTPEDTYEPLPHKNIDTGMGLERVVSIIQDAPTNFETDLFMPI 115 Query: 253 IQASEQV-TGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAM 309 I A E + T +KY V+ +VI DH+R+ SF I DG LP+NEGRGYVLRR++RRA+ Sbjct: 116 IHAVEALGTNVKYGDAPQTDVSFKVIADHIRALSFAIGDGALPSNEGRGYVLRRLLRRAV 175 Query: 310 CYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL 369 + + LG E + L+P + M S YPE++Q K IE+ +R+E+ERF +T++ GL +L Sbjct: 176 MHGKKLGINEAFLYKLVPVVGEIMVSYYPEVLQQKDFIEKVVRTEEERFHETINEGLSML 235 Query: 370 DGVLSHL--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRS 427 + V+ + K + L+G + FKLYDT G P+++ +++ GL +D F +E QR Sbjct: 236 NEVIKEVKDAKGDTLDGKIIFKLYDTFGFPVELTEEVAEDEGLK-VDHAGFETEMEAQRE 294 Query: 428 RAR-AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTN 486 RAR A S G + +K + ++F+GY +LT+ Sbjct: 295 RARSARSKETSMGVQSALLTDIKVE---SKFVGY---------------------TELTH 330 Query: 487 GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQI 543 V I+Q +V EA +G E++F +TPFYAE GGQ+ D G GD + + Sbjct: 331 DSELFV--IIQGDALVNEASAG-TAELIFAETPFYAEMGGQIADRGYVKNTAGD-VVANV 386 Query: 544 TDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS 603 DV+K G F+H V + ++ L +D + R ++ NH+ATHLLH AL +LG Sbjct: 387 VDVKKAPNGQFLHKVEVLAPLAEGQI-YQLQVDERMRTRILKNHTATHLLHRALKDVLGE 445 Query: 604 HVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASG 663 H +Q GS + P LRFD TH +TS EL +E VN+ I + +PVVT + + A G Sbjct: 446 HANQAGSLVAPGHLRFDFTHFGQVTSEELARMEAIVNEKIWEAIPVVTIETDIDTAKNMG 505 Query: 664 AAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 A AL G KY VRVV++ G +S LCGGTHV++T +I + IVSES I AG+RRI Sbjct: 506 AMALFGEKYGKEVRVVNI-----GDYSIELCGGTHVANTEDIGIFKIVSESGIGAGVRRI 560 Query: 724 EAITGQRARSHLMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQL- 781 EA+T + A L ++ +LK +A+ +K Q VV + E+ ++ K QL Sbjct: 561 EAVTSKEAYQLLQEEERQLKEIATLVKSPQLKEVVTKT----EQLQQQLRDLQKENEQLA 616 Query: 782 ----NVEDLSCHK-IADVNFMSHIISEVDSK---ELKSVMDALQKKIQSGIIMLVGISKE 833 N + K + DVN + +I ++V+ K +L+ + D ++K S +++L +++ Sbjct: 617 GKLANQQAGDIFKDVKDVNGVRYIAAQVNVKDMNQLRQLADQWKQKELSDVLVL-ATAQD 675 Query: 834 KKASVLIVVTEDLLDR-FNAVDLAR-LSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAG 891 +K S+L +T+D+ + A DL + ++ KV GGGGGRP MAQ+GG N A+A Sbjct: 676 EKVSLLAAMTKDMNGKGLKAGDLIKAIAPKVG--GGGGGRPDMAQAGGKNPAGIADALAE 733 Query: 892 VASFL 896 V ++L Sbjct: 734 VENWL 738 >gi|256077790|ref|XP_002575183.1| alanyl-tRNA synthetase [Schistosoma mansoni] gi|238660414|emb|CAZ31416.1| alanyl-tRNA synthetase, putative [Schistosoma mansoni] Length = 980 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 287/776 (36%), Positives = 408/776 (52%), Gaps = 74/776 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQAV 61 +R F EFF+ GH + SSS IP NDPTL+F N+GM +K IF G P + Sbjct: 10 LRKQFFEFFESKGHVYVHSSSTIPHNDPTLLFANAGMNQYKPIFQGTVDPNSELGRLKRS 69 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VGR HHTFFEMLGN+SFG YFK+ A + AW+LLT+ + + Sbjct: 70 YNSQKCIRAGGKHNDLDDVGRDVYHHTFFEMLGNWSFGDYFKKEACEWAWELLTEVWKIP 129 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T + DEEA +W I GL D ++ +NFW M ETGPCGPCS Sbjct: 130 SERLYVTYFGGDISNGLPADEEARDIWISI-GLPKDHVLPFGMKENFWEMGETGPCGPCS 188 Query: 174 EIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EI +D+ G+ L +++ +EIWNLVF+QF ++ LP IDTGMG ER Sbjct: 189 EIHYDRVGDRDAAHL--VNQDDPDVLEIWNLVFIQFNREEGGSLKPLPAKHIDTGMGFER 246 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSSS 283 + +VLQ K +NYD DLF L + E T + Y G V +RV+ DH R + Sbjct: 247 VLSVLQNKRSNYDTDLFVPLFKTIEAGTNTRPYTGKVGVEDTDKIDMAYRVLADHARVLT 306 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE-MGSAYPELIQ 342 + DG N GRGYV+RRI+RRA+ +A + +P + L + E +G +PE+ + Sbjct: 307 IALGDGGRAQNTGRGYVIRRILRRAVRFAVEVLNAKPGFLATLVDIVIETLGDTFPEITR 366 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL----GKDEILNGDVAFKLYDTHGLPL 398 I+E + E+E+F TL RG D V+ L + L+G+VA+ LY+T+G PL Sbjct: 367 DPDTIKELINEEEEQFLVTLKRGRRFFDRVIKDLKASGSNNTTLSGEVAWGLYETYGFPL 426 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGS--GTTEKIWFSLKEKY---- 452 D+ Q IL ID+ + +A EE + R+++ GS T LK K Sbjct: 427 DLTQ-ILAEEHHLKIDLNGYEKAKEEAQIRSQSRKCTGGSIIDLTVHALAELKSKNISVT 485 Query: 453 -GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA-VSGQK 510 + +F+ L G+ + + V AI+ + + VE +S Q Sbjct: 486 DDSEKFVYTSDLNGNYVFPDSE----------------ATVLAILYENKFVESVDLSSQM 529 Query: 511 VEVVFDQTPFYAEAGGQLGDTG--CAIGDGI-RLQITDVQKKAEGIFVHHAIVERGILRT 567 ++ ++T FYAE+GGQL D G ++ D + ++DVQ G ++ H G L Sbjct: 530 CGIILNKTIFYAESGGQLYDHGFITSLTDEVTEFSVSDVQ--CRGGYILHIGNLHGKLIV 587 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 ++L++D R L NH+ TH+L+ AL ++ Q GS + PD LRFD T + + Sbjct: 588 GNRVLLSLDTVRRTALMRNHTGTHVLNFALRELV-DESEQKGSLVAPDRLRFDFTAKRGM 646 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDA-IASGAAALLGTKYNDRVRVVSV----- 681 T EL E+ + +I++ L V + ++ A G A+ G Y D VRVVS+ Sbjct: 647 TRDELAKAEEICDTMISKRLNVYSSNVSLSYAKTIQGVRAVFGEAYPDPVRVVSIGVPVT 706 Query: 682 ------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E G S CGGTHV +T I +L IVSE +I G+RRI A+TG A Sbjct: 707 SLVADPETGYGKTTSVEFCGGTHVLNTKHIGVLVIVSEEAISKGVRRIIALTGHEA 762 >gi|311257039|ref|XP_003126924.1| PREDICTED: alanyl-tRNA synthetase, cytoplasmic-like [Sus scrofa] Length = 769 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 276/746 (36%), Positives = 400/746 (53%), Gaps = 66/746 (8%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV- 61 S IR F++FF++N H + SS+ IP +DPTL+F N+GM FK IF P + Sbjct: 6 TASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAK 65 Query: 62 ----TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE 117 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE A ++A +LLT+E Sbjct: 66 LSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQE 125 Query: 118 FDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 F + RLY+T + DE E ++W+ + GL KI+ DNFW M +TGPC Sbjct: 126 FGIPVERLYVTYFGGDEAAGLEPDLECKQIWQNL-GLDDSKILPGNMKDNFWEMGDTGPC 184 Query: 170 GPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCSEI +D+ GG + +++ +EIWNLVF+Q+ ++ LPK SIDT Sbjct: 185 GPCSEIHYDR----IGGRDAAHLVNQDDPNVLEIWNLVFIQYNRETDGVLKPLPKKSIDT 240 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVD 277 GMGLER+ +VLQ K +NYD DLF +A ++ TG + Y G + +RV+ D Sbjct: 241 GMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGADDADGIDMAYRVLAD 300 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSA 336 H R+ + +ADG P N GRGYVLRRI+RRA+ Y+ L + L+ + +G A Sbjct: 301 HARTITVALADGGRPDNTGRGYVLRRILRRAVRYSHEKLNASRGFFATLVDVVVQSLGDA 360 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + ++++ + E+ +F KTL RG +LD + LG + + GD A+ LYDT+G Sbjct: 361 FPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGF 420 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ I +GL +D+ F EE+R A+ S G G+G + I + Y + Sbjct: 421 PVDLTGLIAEEKGLV-VDMDGF----EEERKLAQLKSQGKGAGGEDLIMLDI---YAIEE 472 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPID--LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 RG + + K + + V A+ + VEE +GQ+ VV Sbjct: 473 L----RERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQECGVV 528 Query: 515 FDQTPFYAEAGGQLGDTGCAIG------DGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 D+T FYAE GGQ+ D G + D + + Q + G +V H G L+ Sbjct: 529 LDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVR--GGYVLHIGTIYGSLKVG 586 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPIT 628 + L ID RR + NH+ATH+L+ AL ++LG Q GS + PD LRFD T ++ Sbjct: 587 DQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGAMS 645 Query: 629 SAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----E 682 + ++K E+ N++I PV + A A G A+ Y D VRVVS+ E Sbjct: 646 TQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 705 Query: 683 YED------GGVHSSALCGGTHVSST 702 D G + S CGGTH+ ++ Sbjct: 706 LLDDPSGPAGSLTSVEFCGGTHLQNS 731 >gi|195867853|ref|ZP_03079852.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660430|gb|EDX53688.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 906 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 284/947 (29%), Positives = 474/947 (50%), Gaps = 103/947 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 6 TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D + Sbjct: 66 SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDVK 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TV+++D+ + W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 122 KLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEHF 179 Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Q Sbjct: 180 DPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287 + N+D D+F + ++ EQ + KY+ N N +N ++VI DH+R++ F IA Sbjct: 240 DVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAIA 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346 DG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K L Sbjct: 300 DGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKTL 359 Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I+ L E + F KTL GL + + + ++ L+ D+ FKL DT+G P++++++I Sbjct: 360 AKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKEI 415 Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 C + +D+ +F+ + + S+A +L + E + + Y++ Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQNESLM-----QLDVDSTFHYEI 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 R + I+ + E+V + + + VVFD T FYA Sbjct: 470 FRWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 +GGQ DTG I + + + DV K VHH V+ L ++L I+ Q+R+ Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKS 565 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N++ Sbjct: 566 ITANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699 + N V M+ ++A A GAAA Y ++RV+ + G S LCGGTH Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740 T EI + IV +S AG RI +TG +++L D Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDH 739 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794 KL L + + + + + E++ +L+ K++ + ++ + I D+ Sbjct: 740 KLNDLYNAFANWKNLSIEDYDLLNEKFTELKQTLINFKIEFDKQN-AKQAIIDIKNTFNA 798 Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851 N H+ D+K + + ++ L + Q+ + + + E K L+ + E N Sbjct: 799 QQTNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATT-N 856 Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++L + ++ + G GGG+P+ Q G K D+ + + ++ Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903 >gi|171920911|ref|ZP_02932062.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209554598|ref|YP_002284771.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|171903130|gb|EDT49419.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209542099|gb|ACI60328.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 906 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 283/947 (29%), Positives = 474/947 (50%), Gaps = 103/947 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 6 TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D + Sbjct: 66 SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDVK 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TV+++D+ + W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 122 KLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEHF 179 Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Q Sbjct: 180 DPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287 + N+D D+F + ++ EQ + KY+ N N +N ++VI DH+R++ F IA Sbjct: 240 DVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAIA 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346 DG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K L Sbjct: 300 DGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKTL 359 Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I+ L E + F KTL GL + + + ++ L+ D+ FKL DT+G P++++++I Sbjct: 360 AKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKEI 415 Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 C + +D+ +F+ + + S+A +L + E + + Y++ Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQNESLM-----QLDVDSTFHYEI 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + + I+ + E+V + + + VVFD T FYA Sbjct: 470 FKWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 +GGQ DTG I + + + DV K VHH V+ L ++L I+ Q+R+ Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKS 565 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N++ Sbjct: 566 ITANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699 + N V M+ ++A A GAAA Y ++RV+ + G S LCGGTH Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740 T EI + IV +S AG RI +TG +++L D Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDH 739 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794 KL L + + + + + E++ +L+ K++ + ++ + I D+ Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFTELKQALINFKIEFDKQN-AKQAIIDIKNTFNA 798 Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851 N H+ D+K + + ++ L + Q+ + + + E K L+ + E N Sbjct: 799 QQTNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATT-N 856 Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++L + ++ + G GGG+P+ Q G K D+ + + ++ Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903 >gi|238022662|ref|ZP_04603088.1| hypothetical protein GCWU000324_02571 [Kingella oralis ATCC 51147] gi|237865865|gb|EEP67001.1| hypothetical protein GCWU000324_02571 [Kingella oralis ATCC 51147] Length = 963 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 202/379 (53%), Positives = 267/379 (70%), Gaps = 11/379 (2%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + +R FL+FFQ GH+++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TNELRAKFLQFFQSKGHQIVASSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYTRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ I AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEVIPFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L +TVY ED+EA+ +W + G+ A++I+RI N DNFW M +TGPCGPC+E Sbjct: 123 KEKLLVTVYAEDDEAYNIWHDVIGVPAERIVRIGDNKGSRYASDNFWQMGDTGPCGPCTE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG++P+ Sbjct: 243 AAVMQGVHSNYEIDLFQDLLKAVARETGTAFSMEE-PSLKVIADHIRSCSFLIADGVMPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+P L EMG AYPEL + + I E LR Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKNAFFYKLVPDLVKEMGGAYPELKEKQTHIMEVLRG 361 Query: 354 EDERFGKTLDRGLVLLDGV 372 E+ RFG+TL++G+ L + V Sbjct: 362 EEMRFGETLEKGMGLFNQV 380 Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 176/524 (33%), Positives = 271/524 (51%), Gaps = 49/524 (9%) Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440 I++G+ FKLYDT+G P D+ D+ G+ +D F + +E QR+RARA Sbjct: 476 IMSGEHIFKLYDTYGFPYDLTADMARELGIE-LDEEGFEREMEAQRARARAAQ---NFKA 531 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 ++ + E TQF GYD K +D T V A+ + GE Sbjct: 532 NAQVAYDGAE----TQFHGYD-----------------KRSLDAT------VLALYRDGE 564 Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560 V E +G+ VV D TPFYAE+GGQ+GD G R ++ D QK + H + Sbjct: 565 AVNELNAGESGIVVLDHTPFYAESGGQVGDVGFIFSGENRFEVEDTQKIKAAVHGHFGTL 624 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 G L+ S+ +D R + NHS THL+H AL +LG+HV Q GS + RFD Sbjct: 625 VSGSLKVGDSICAEVDNVVREAIMRNHSVTHLMHKALRDVLGTHVEQKGSLQNAELTRFD 684 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680 ++H + IT+ E+ +E VN I QN+PV M+ EDA SGA L G KY D VRV++ Sbjct: 685 ISHPQAITAEEIAEVERRVNHAIMQNVPVRVETMSLEDAQKSGAMMLFGEKYGDFVRVIT 744 Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 + G +S+ LCGGTHV+ TG+I I+SE I AGIRR+EAITGQ A + Q+ Sbjct: 745 M-----GDYSTELCGGTHVARTGDIGFFKIISEGGIAAGIRRVEAITGQAALDWVQNQEN 799 Query: 741 KLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIAD----- 793 +K + +K +QG +++ +++ + L+ A+ K +L V + K+ D Sbjct: 800 LIKEAVNEVK-AQGAKDLLAKIQTALAHSKALEKELARAKAELAVH--AGAKLLDNAVTV 856 Query: 794 -VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNA 852 + E D+ L+ ++ L K + +++L ++ + K ++ V++ + + A Sbjct: 857 GAARLVAAQIEADAAALRDIVTDLTSKGDNIVVLLAAVN-DGKIALCAGVSKAMTAKVKA 915 Query: 853 VDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 DL + +A+ + GG GGGRP +AQ+GG + K I V ++ Sbjct: 916 GDLVKHAAEQI-GGKGGGRPDLAQAGGSDVEKLPAMIESVKDWV 958 >gi|188024171|ref|ZP_02996895.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518577|ref|ZP_03004033.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524540|ref|ZP_03004530.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273661|ref|ZP_03206196.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551130|ref|ZP_03772076.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|188018805|gb|EDU56845.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997839|gb|EDU66936.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659576|gb|EDX52956.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249689|gb|EDY74470.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225378945|gb|EEH01310.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 906 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 286/947 (30%), Positives = 477/947 (50%), Gaps = 103/947 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 6 TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D + Sbjct: 66 SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDVK 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TV+++D+ + W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 122 KLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEHF 179 Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Q Sbjct: 180 DPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287 + N+D D+F + ++ EQ + KY+ N N +N ++VI DH+R++ F IA Sbjct: 240 DVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAIA 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346 DG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K L Sbjct: 300 DGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKTL 359 Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I+ L E + F KTL GL + + + ++ L+ D+ FKL DT+G P++++++I Sbjct: 360 AKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKEI 415 Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 C + +D+ +F+ + + S+A +L + E SL + + F Y++ Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQNE----SLMQLDVDSTF-HYEI 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + + I+ + E+V + + + VVFD T FYA Sbjct: 470 FKWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 +GGQ DTG I + + + DV K VHH V+ L ++L I+ Q+R+ Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKS 565 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N++ Sbjct: 566 ITANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699 + N V M+ ++A A GAAA Y ++RV+ + G S LCGGTH Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740 T EI + IV +S AG RI +TG +++L D Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDH 739 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794 KL L + + + + + E++ +L+ K++ + ++ + I D+ Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFTELKQTLINFKIEFDKQN-AKQAIIDIKNTFNA 798 Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851 N H+ D+K + + ++ L + Q+ + + + E K L+ + E N Sbjct: 799 QQTNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATT-N 856 Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++L + ++ + G GGG+P+ Q G K D+ + + ++ Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903 >gi|260187569|ref|ZP_05765043.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis CPHL_A] Length = 819 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 303/832 (36%), Positives = 451/832 (54%), Gaps = 57/832 (6%) Query: 95 NFSFGGYFKERAIQLAWDLLTKE-----FDLDQRRLYITVYDEDEEAFKLWKKISGLSAD 149 NFSFG YFK AI+LAW LLT + LD R++ TVY +D+EA +LW++++GL A+ Sbjct: 4 NFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAE 63 Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSSEEGERYIEIWNLVFMQF 208 +I R DN+WSM GPCGP SEI++D+G E P G P SE+ RY+E+WNLVFMQ Sbjct: 64 RIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSED--RYLEVWNLVFMQN 121 Query: 209 EQ---QNKQERFIL---PKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262 E+ K++ IL P+ +IDTGMG+ER+A VLQ+ N Y+ DL + ++ +V Sbjct: 122 ERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVLDTVARVAAR 181 Query: 263 KYE-GN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE 319 Y+ GN + V +R+I DH R+++ LI DG+ P N+GRGYVLRR++RR + A+LLG Sbjct: 182 AYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDA 241 Query: 320 PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD 379 ++ L+ + MG +YPEL+ I +E+ F +TL G L + V S K Sbjct: 242 AIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKS 301 Query: 380 --EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG 437 +L+G AF L+DT+G P+++ ++ GL +D I F + + EQR RA+A + Sbjct: 302 GATVLSGSDAFTLHDTYGFPIELTLEMAAETGLQ-VDEIGFRELMAEQRRRAKADAAARK 360 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 + + GAT+F G+D LR S+ V ++ P+ + +GV+ Sbjct: 361 HAHADLSAYRELVDAGATEFTGFDELR-SQARILGIFVDGKRVPV-VAHGVAG------- 411 Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG----IRLQITDVQKKAEGI 553 A GQ+VE+V D+TP YAE+GGQ+ D G G G R +TDVQK A+ + Sbjct: 412 ------GAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTL 465 Query: 554 FVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCIT 613 +VH VE G +++ +D RR + HS TH++H AL +LG + Q GS Sbjct: 466 WVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNR 525 Query: 614 PDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYN 673 P LRFD P+T + +E+ N+ + + V T + A A GA AL G Y Sbjct: 526 PGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYP 585 Query: 674 DRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARS 733 D VRVV E GG S LCGGTHVS+T +I + I+ ESSI +G+RR+EA G + Sbjct: 586 DEVRVV----EMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFR 641 Query: 734 HLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQLIH-AKRKLQLNVEDLSC 788 HL + + LAS LKV V RV + E R +L+ + A + Sbjct: 642 HLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASVRAAATNAAAGA 701 Query: 789 HKIADVNFMSHIIS-EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVV----- 842 +I +V ++ +S + + +L+S++ ++ K+ S ++ I++ + +V V Sbjct: 702 QRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPA 761 Query: 843 TEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVAS 894 +DL R N DL + A + G GGG+ +AQ G N D A+ V S Sbjct: 762 AQDLGIRAN--DLVKQLAVAV-EGRGGGKADLAQGSGKNPTGIDAALDAVRS 810 >gi|67925719|ref|ZP_00519029.1| Alanyl-tRNA synthetase, class IIc [Crocosphaera watsonii WH 8501] gi|67852440|gb|EAM47889.1| Alanyl-tRNA synthetase, class IIc [Crocosphaera watsonii WH 8501] Length = 615 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 246/621 (39%), Positives = 370/621 (59%), Gaps = 41/621 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+F+ + H++LPS+SL+P DPT++ T +GM+PFK IF GQ++ + TT QK Sbjct: 13 IRDRFLQFYSQYKHQILPSASLVP-EDPTVLLTIAGMLPFKPIFLGQKQSDFPRATTSQK 71 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R ND++NVGRT RHHTFFEMLGNFSFG YFKE+AI+ AW+L TK + L + Sbjct: 72 CIRT----NDIENVGRTARHHTFFEMLGNFSFGDYFKEQAIKWAWELSTKVYQLPPENIV 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++V++ D+EAFK+W++I G+ +I R+ DNFW TGPCGPCSE+++D + G Sbjct: 128 VSVFENDDEAFKMWEEIIGVPPQRIKRMGEKDNFWKAGPTGPCGPCSELYYDFHPEL-GD 186 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 E+ R+IE +NLVFM++ + + L +IDTGMGLERMA +LQ+ NNY+ Sbjct: 187 DDIDLEDDSRFIEFYNLVFMEYNRDADGKLTPLQNKNIDTGMGLERMAQILQKVPNNYET 246 Query: 247 DLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRR 303 DL +I+ + + + Y+ V+ +VI DH+RS +I+D I +N RGYVLRR Sbjct: 247 DLIFPIIETAANIANINYQKATEKTKVSLKVIGDHVRSVVHMISDNITASNTDRGYVLRR 306 Query: 304 IMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLD 363 ++RR + + RL+G + + AYP++ + I+ L E+ F KTL+ Sbjct: 307 LIRRVVRHGRLIGIEGKFINEVAETAIQLSQKAYPQVRERDSFIKAELEREEATFLKTLE 366 Query: 364 RGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALE 423 RG LL ++S K ++G AF LYDT G PL++ Q+I L +DI F +E Sbjct: 367 RGEKLLAEIISKTEKQGQISGVDAFTLYDTFGFPLELTQEIAEESNLT-VDIEGFEVEME 425 Query: 424 EQRSRARA--HSLGLG-SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKP 480 +Q+ R++A ++ L G+ +K L E T+F+GY L+ Sbjct: 426 QQQERSKAAHETIDLTVQGSLDK----LAEHIHPTEFLGYTDLQS--------------- 466 Query: 481 PIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR 540 ++ V+A++ +G+ VE A +G ++++V D+TPFY E+GGQ+GD G G+ + Sbjct: 467 --------TAKVEAVLIEGKSVETATAGTEIQIVLDKTPFYGESGGQIGDRGFLTGEDLV 518 Query: 541 LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTI 600 +++ DVQK++ GIFVH VERG + L TID RR++ NH+ATHL AL + Sbjct: 519 IRVDDVQKES-GIFVHFCRVERGQVSVNEHLKATIDRSCRRRVQANHTATHLFTAALKKV 577 Query: 601 LGSHVSQNGSCITPDGLRFDV 621 + +SQ GS D L+FD+ Sbjct: 578 VDDSISQAGSLGDFDRLKFDL 598 >gi|225550618|ref|ZP_03771567.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379772|gb|EEH02134.1| alanine--tRNA ligase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 906 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 286/947 (30%), Positives = 476/947 (50%), Gaps = 103/947 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 6 TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D + Sbjct: 66 SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDVK 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TV+++D+ + W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 122 KLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEHF 179 Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Q Sbjct: 180 DPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287 + N+D D+F + ++ EQ + KY+ N N +N ++VI DH+R++ F IA Sbjct: 240 DVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAIA 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346 DG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K L Sbjct: 300 DGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMGDFYTYLKDEKTL 359 Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I+ L E + F KTL GL + + + ++ L+ D+ FKL DT+G P++++++I Sbjct: 360 AKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKEI 415 Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 C + +D+ +F+ + + S+A +L + E SL + + F Y++ Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQNE----SLMQLDVDSTF-HYEI 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 R + I+ + E+V + + + VVFD T FYA Sbjct: 470 FRWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 +GGQ DTG I + + + DV K VHH V+ L ++L I+ Q+R+ Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKS 565 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N++ Sbjct: 566 ITANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699 + N V M+ ++A A GA A Y ++RV+ + G S LCGGTH Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAVAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740 T EI + IV +S AG RI +TG +++L D Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDH 739 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794 KL L + + + + + E++ +L+ K++ + ++ + I D+ Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFTELKQALINFKIEFDKQN-AKQAIIDIKNTFNA 798 Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851 N H+ D+K + + ++ L + Q+ + + + E K L+ + E N Sbjct: 799 QQTNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATT-N 856 Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++L + ++ + G GGG+P+ Q G K D+ + + ++ Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903 >gi|325136739|gb|EGC59339.1| alanyl-tRNA synthetase [Neisseria meningitidis M0579] gi|325201730|gb|ADY97184.1| alanyl-tRNA synthetase [Neisseria meningitidis M01-240149] gi|325208526|gb|ADZ03978.1| alanyl-tRNA synthetase [Neisseria meningitidis NZ-05/33] Length = 989 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/419 (50%), Positives = 281/419 (67%), Gaps = 14/419 (3%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FF+ GH ++ SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 3 TSELRQKFLKFFETKGHTVVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYSRATT 62 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK AI AW+ LT ++ Sbjct: 63 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKRDAIHFAWEFLTSPEWLNIP 122 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L TVY ED+EA+ +W G+ +++I+RI N DNFW M +TGPCGPCSE Sbjct: 123 KDKLLATVYAEDDEAYNIWLNEIGMPSERIVRIGDNKGAKYASDNFWQMGDTGPCGPCSE 182 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 183 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 242 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG+LP+ Sbjct: 243 AAVMQHVHSNYEIDLFQDLLKAVARETGAAFSMEE-PSLKVIADHIRSCSFLIADGVLPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG + L+P L MG AYPEL + + I E LR+ Sbjct: 302 NEGRGYVLRRIIRRAVRHGYKLGQKQAFFYKLVPDLVKAMGDAYPELKEKQTQIMEALRA 361 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAG 412 E+ RFG+TL++G+ L + V + L ++I D+ K + + DI D+ R G Sbjct: 362 EESRFGETLEKGMGLFNQVYNELKFNQIF--DLLAKEFKVTPVE-DIDLDMFSTRNFVG 417 Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 175/526 (33%), Positives = 265/526 (50%), Gaps = 55/526 (10%) Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 LNG+ FKLYDT+G P D+ DI R + +D F + +E QR+RARA + Sbjct: 503 LNGEHIFKLYDTYGFPYDLTADICRERNIE-LDEAGFEREMEAQRTRARA-------AQS 554 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 K L T+F GY +R+ S V A+ + GE Sbjct: 555 FKANAQLPYDGQDTEFKGY----------SERQT-------------ESKVLALYKDGEQ 591 Query: 502 VEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVE 561 V E G + +V D TPFYAE+GGQ+GD G R ++ D QK +F + Sbjct: 592 VNELNEGDEGAIVIDFTPFYAESGGQVGDVGYIFAGENRFEVRDTQKIKAAVFGQFGVQT 651 Query: 562 RGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDV 621 G L+ S+ +D + R NHSATHL+H AL +LG HV Q GS +T + RFD+ Sbjct: 652 SGRLKVGDSVTAKVDDEIRNANMRNHSATHLMHKALRDVLGGHVEQKGSLVTAESTRFDI 711 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV 681 +H + +T+ E+ +E VN+ + N+ V IM+ EDA +GA L G KY + VRV+ + Sbjct: 712 SHPQAVTAEEIAEVERRVNEAVLANVAVNAAIMSMEDAQKTGAMMLFGEKYGEEVRVLQM 771 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK 741 G S+ LCGGTHVS TG+I L I+SE I AG+RRIEAITG A Q+ Sbjct: 772 -----GGFSTELCGGTHVSRTGDIGLFKIISEGGIAAGVRRIEAITGLNALKWAQEQERL 826 Query: 742 LKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCHK 790 +K + + K ++ +V+ +++ + L+ +HA KL + +DL K Sbjct: 827 VKDIIAETKAQTEKDVLAKIQAGAAHAKALEKELARAKAELAVHAGAKLLDDAKDLGAAK 886 Query: 791 IADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRF 850 + E D+ L+ ++ L K + +I+L ++ + K S+ V++ L + Sbjct: 887 LV------AAQIEADAAALREIVTDLTGKSDNAVILLAAVN-DGKVSLCAGVSKPLTGKV 939 Query: 851 NAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 A DL + +A+ + GG GGGRP +AQ+GG + K + V ++ Sbjct: 940 KAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDAGKLPAVLDSVKDWV 984 >gi|329120448|ref|ZP_08249113.1| alanine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200] gi|327461906|gb|EGF08236.1| alanine--tRNA ligase [Neisseria bacilliformis ATCC BAA-1200] Length = 992 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 203/379 (53%), Positives = 265/379 (69%), Gaps = 11/379 (2%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 S +R FL+FFQ GH + SSSL+P +DPTL+FTN+GM FK++F G +K Y TT Sbjct: 33 TSELRQKFLDFFQSKGHTAVRSSSLVPHDDPTLLFTNAGMNQFKDVFLGFDKRPYTRATT 92 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLD 121 QKCVRAGGKHNDL+NVG T RHHTFFEM+GNFSFG YFK+ I AW+ LT ++ Sbjct: 93 AQKCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYFKKEVIPFAWEFLTSPEWLNIP 152 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + +L +TVY ED+EA+ +W + G+ A++I+RI N DNFW M +TGPCGPC+E Sbjct: 153 KEKLLVTVYAEDDEAYNIWHDVIGVPAERIVRIGDNKGSRYASDNFWQMGDTGPCGPCTE 212 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D GE I GG+PGS EE G+R+IEIWN VFMQF + + LPK S+DTGMGLERM Sbjct: 213 IFYDHGEEIWGGIPGSPEEDGDRWIEIWNCVFMQFNRDEQGNMNPLPKPSVDTGMGLERM 272 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A V+Q +NY+IDLF+ L++A + TG + + +VI DH+RS SFLIADG++P+ Sbjct: 273 AAVMQGVHSNYEIDLFQDLLKAVARETGTAFSMEE-PSLKVIADHIRSCSFLIADGVMPS 331 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYVLRRI+RRA+ + LG L+P L EMG AYPEL + + I E LR Sbjct: 332 NEGRGYVLRRIIRRAVRHGYKLGQKNAFFYKLVPDLVKEMGGAYPELKEKQTHIMEVLRG 391 Query: 354 EDERFGKTLDRGLVLLDGV 372 E+ RFG+TL++G+ L + V Sbjct: 392 EEMRFGETLEKGMGLFNQV 410 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 173/515 (33%), Positives = 265/515 (51%), Gaps = 55/515 (10%) Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440 I++G+ FKLYDT+G P D+ D+ G+ +D F + +E QR+RARA Sbjct: 506 IMSGEHIFKLYDTYGFPYDLTADMARELGIE-LDEEGFEREMEAQRARARAAQ---NFKA 561 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 ++ + E TQF GYD K +D T V A+ + GE Sbjct: 562 NAQVAYDGAE----TQFHGYD-----------------KRSLDAT------VLALYRDGE 594 Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIV 560 V + +G+ VV D TPFYAE+GGQ+GD G R + D QK + H + Sbjct: 595 AVNQLNAGEAGIVVLDHTPFYAESGGQVGDVGFIFSGKNRFAVEDTQKIKAAVHGHFGTL 654 Query: 561 ERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD 620 G L+ S+ +D R + NHS THL+H AL +LG+HV Q GS + RFD Sbjct: 655 VSGSLKVGDSICAEVDNAVREAIMRNHSVTHLMHKALRDVLGTHVEQKGSLQNAELTRFD 714 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVS 680 ++H + I++ E+ +E VN I N+PV M+ EDA SGA L G KY D VRV++ Sbjct: 715 ISHPQGISAEEIAEVERRVNAAIIANVPVKVETMSIEDAQKSGAVMLFGEKYGDFVRVIT 774 Query: 681 VEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDE 740 + G +S LCGGTHV+ TG+I I+SE I AGIRR+EAITG A + Q+ Sbjct: 775 M-----GDYSIELCGGTHVTRTGDIGFFKIISEGGIAAGIRRVEAITGLAALAWAQNQES 829 Query: 741 KLKSLASFLKV-SQGNVVGRVEEIWEEYRKLQ----------LIHAKRKLQLNVEDLSCH 789 +K++ + +K ++ +V+ +++ + L+ +HA KL N +DL Sbjct: 830 LMKNIIAEVKAQTEKDVLAKIQANAANTKALEKELAKAKAELAVHAGAKLLDNAKDLGTA 889 Query: 790 KIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849 K+ E D+ L+ ++ L K + +I+L ++ K S+ V++ L ++ Sbjct: 890 KLVAAQ------IEADAAALREIVTDLTGKSDNAVILLAAVNN-SKVSLCAGVSKPLTNK 942 Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNK 884 A DL + +A+ + GG GGGRP +AQ+GG + ++ Sbjct: 943 VKAGDLVKFAAEQV-GGKGGGRPDLAQAGGTDASQ 976 >gi|255084804|ref|XP_002504833.1| alanyl-tRNA synthetase [Micromonas sp. RCC299] gi|226520102|gb|ACO66091.1| alanyl-tRNA synthetase [Micromonas sp. RCC299] Length = 945 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 274/760 (36%), Positives = 406/760 (53%), Gaps = 70/760 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAV 61 IR TFL+FF+ H ++PSS ++P +DPTL+F N+GM FK F G P + Sbjct: 12 IRQTFLDFFEGKEHTVVPSSPVVPHDDPTLLFANAGMNQFKPCFLGTADPKGPLAKLKRA 71 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG +FKE AI AW+LLTK + L Sbjct: 72 TDTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDFFKEEAIGWAWELLTKVYMLP 131 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 + RLY T + D+EA ++W K L K++ DNFW M + GPCGPC+ Sbjct: 132 EDRLYATYFGGDPAQGLPPDDEAKEIWLKY--LPPHKVLPFDCKDNFWEMGDVGPCGPCT 189 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG S + + +EIWN+VF+QF ++ LP +DTGMG Sbjct: 190 EIHYDR----IGGRDASDLVNMDDPNCLEIWNVVFIQFNREEGGVLKPLPAKHVDTGMGF 245 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLRS 281 ER+A++LQ K +NYD D+F + A + VTG + G + +RV+ DH+R+ Sbjct: 246 ERLASILQGKMSNYDTDVFMPIFDAIQAVTGAEPYAGKLGAEDVGEKDMAYRVVADHVRT 305 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPEL 340 +F IADG P ++GR YVLRR++RRA+ + R LG + L+ + G +PE+ Sbjct: 306 LTFAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFATLVKTVVQLFGDVFPEI 365 Query: 341 IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLP 397 ++ + + E + E+E FG+TL +G+ + + G+D + +G AF L+++ G P Sbjct: 366 VKEEKRVTEIIAEEEESFGRTLLKGVEQFKKIAAKAKEEGRDTV-SGAEAFLLWESFGFP 424 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 +D+++ I+C +D F +A +E + ++RA G ++ F + AT + Sbjct: 425 VDLVE-IMCEENGMKVDNAGFEEAFKEAQEKSRAAG---KKGGGRQLLFEAE----ATAW 476 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE--EAVSGQKVEVVF 515 + + G + K P + VKAI+ VE E V G + +V Sbjct: 477 LANN---GVPLTDDSHKYAAGSVP-------EATVKAILTLDGFVESTENVEG-PIGLVL 525 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTI 575 D+T FYAE+GGQ+ D G I G + K A G +H G + ++ + Sbjct: 526 DKTSFYAESGGQVCDVG-VIKSGSASATVEDTKVAAGFVLHSCDSVDGAVAVGDAVRCLV 584 Query: 576 DYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSI 635 DY R + NH+ TH L++AL +LG V Q GS + + LRFD +HSK +T E++ + Sbjct: 585 DYDRRANIMPNHTMTHCLNYALRRVLGDSVDQKGSLVDDEKLRFDFSHSKAMTPDEIEKV 644 Query: 636 EDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EY 683 E V D + L V TR + A SG A+ G Y D VRVVSV Sbjct: 645 EALVRDQVNAKLAVHTREVALAKAKEISGLRAVFGEVYPDPVRVVSVGPSIDDLLGAPAS 704 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 ED +S CGGTH+++T + ++SE I G+RRI Sbjct: 705 EDWKGYSIEFCGGTHLANTSDAADFVLLSEEGIAKGVRRI 744 >gi|170590129|ref|XP_001899825.1| Alanyl-tRNA synthetase [Brugia malayi] gi|158592744|gb|EDP31341.1| Alanyl-tRNA synthetase, putative [Brugia malayi] Length = 962 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 316/968 (32%), Positives = 472/968 (48%), Gaps = 113/968 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R F+ FF+ H + SSS+IP +DPTL+F N+GM +K IF G +P + +A Sbjct: 9 VRAAFINFFKDREHTYVHSSSVIPFDDPTLLFANAGMNQYKPIFLGTVEPSSEMAKLKRA 68 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AW+LLTK + Sbjct: 69 VNT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKLEVCNWAWELLTKVLGI 127 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 RLY++ + D DEE ++W I G+ I+ DNFW M + GPCGPC Sbjct: 128 PGERLYVSYFGGDEKTGLDADEECRQIWLNI-GVPPSHILSFGMKDNFWEMGDVGPCGPC 186 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEI +D+ G L + + +EIWNLVFMQF ++ LP+ ID G+G E Sbjct: 187 SEIHYDRVGNRDASHLVNADD--PMVVEIWNLVFMQFNREEDGSLKQLPRKHIDCGLGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282 R+ VLQ K +NYD D+F L A T ++ + + +RVI DH+R+ Sbjct: 245 RLVAVLQNKLSNYDTDIFTPLFXAIHNGTKVRPYSGKVGADDVDGIDMAYRVIADHIRTL 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELI 341 S ++DG P N GRGYVLRRI+RR + YA P + L+P + +G +PEL Sbjct: 305 SIALSDGGRPDNTGRGYVLRRILRRGVRYANEKLSAPPGFLSSLVPTVVNLLGKTFPELH 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + + + + E+++F KTL RG L ++ L IL GDVA++LYDT+G PLD+ Sbjct: 365 KDPQAVMDIINDEEKQFLKTLSRGRTLFQKAVAGLQGHNILPGDVAWRLYDTYGFPLDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS------LKEKYGAT 455 Q + RGL ++ F + E R +A S + + I LK K G Sbjct: 425 QLMAEERGL----LVDF-EVFENCRQKAAGISAAHANKMRDTIDLDVNAISELKNK-GIP 478 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 + ED++ L I+ A+ + ++ SG ++ Sbjct: 479 ATDDSPKYKYYALSSEDQQTLYN------FEKCEGIILALRKDKIFLDTLNSGDFGALIL 532 Query: 516 DQTPFYAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 D+T FYAE GGQ+ DTG + G +++VQ + G V VE G L ++ Sbjct: 533 DRTNFYAEQGGQIFDTGVLTEVDKGSEFIVSNVQIRG-GYVVLVGTVE-GQLCVGDKVIQ 590 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 ID R + NH+ TH+L+ AL ++G V Q GS + PD LRFD+T +P+T +++ Sbjct: 591 AIDEDRRNLIMKNHTGTHVLNFALRKVIG-EVEQKGSLVAPDRLRFDLTAKQPLTYEQIR 649 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV----------EY 683 +E +I N V + + +A L Y D VR+VSV + Sbjct: 650 MVEKESQMLIDTNATVFAKNVPLAEARQING---LRAAYPDPVRIVSVGIPIEELLRNKD 706 Query: 684 EDGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 D V+++ CGGTH+ + G I L I E +I GIRRI A+TG A + D Sbjct: 707 SDLAVNTAVEFCGGTHLHNVGHIGKLVITVEEAIAKGIRRIIALTGPEAFRAIHRADRLE 766 Query: 743 KSLA-SFLKVSQGNVVG-----------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790 + + + K++ ++V RV E++EE + QL + RK + + + K Sbjct: 767 QRVEDAHHKITTDHMVNLDKAQFKAATKRVLELFEEINQSQLPYC-RKESIRKKAKALQK 825 Query: 791 IADVN----------------------------FMSHIISE-VDSKELKSVMDALQKKIQ 821 + D++ F H+ S+ + K L S + ++ K Sbjct: 826 LLDMHDREAKAVLADKVRCEASELDSSLKDGTLFTVHVFSKGANGKVLDSALKSITK--- 882 Query: 822 SGIIMLVGISKEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGP 880 S IM +S + K + V++D+ + A + +VL G GGG AQ+ G Sbjct: 883 SHAIMGFSVSDDGKVVAVARVSKDVASKGLQASEWISRVCQVLDGRGGGTITQ-AQATGN 941 Query: 881 NGNKADQA 888 N ++A Sbjct: 942 NAELVEEA 949 >gi|66816759|ref|XP_642382.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4] gi|74856597|sp|Q54Y20|SYAC_DICDI RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|60470104|gb|EAL68084.1| alanyl-tRNA synthetase [Dictyostelium discoideum AX4] Length = 946 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 276/789 (34%), Positives = 412/789 (52%), Gaps = 95/789 (12%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 +V+ IR TF++FF +K H +PSS++IP +DPTL+F N+GM FK IF GQ P Sbjct: 2 DVNQIRKTFIDFFREKCEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQA 61 Query: 57 -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + +AV + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI AW+LLT Sbjct: 62 KLKRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLT 120 Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + LD+ RLY+T + + D EA LW + L ++++ +NFW M + G Sbjct: 121 EVYKLDKERLYVTYFRGDPEKGLEADLEAKNLW--LQYLPEERVLPFGMKENFWEMGDQG 178 Query: 168 PCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 PCGPCSEI +D+ E G G+S + IEIWNLVF+Q+ ++ + LP+ + Sbjct: 179 PCGPCSEIHYDKVE----GRDGASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHV 234 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--------YEGNNIVN--HRV 274 DTGMGLER+ +++Q+ NYD D+F + A ++VTG E V+ +RV Sbjct: 235 DTGMGLERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRV 294 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEM 333 I DH+R+ +F IADG P+ +GRG VLRRI+RRA+ Y + L L+ + Sbjct: 295 IADHIRTLTFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPAGFFSKLVDVVIANF 354 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393 G +PEL + I+ L E++ F KTL++G+V + ++ + L+ + A+ L Sbjct: 355 GEFFPELRKKPEHIKMVLTREEDMFNKTLEKGIVEFEKMIKK-SVNNTLSAENAYFLSTC 413 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQ----RSRARAHSLGLGSGTTEKIWFSLK 449 +G P+D+ I+ +DI + E Q R R + + L G W Sbjct: 414 YGFPIDLTT-IMAEEKNYKVDIKGYEGLCEAQSEIDRKRQKEKKVELTLGAEANAW---- 468 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 L+ + D ++ + + S++KAI E V+ A G Sbjct: 469 -------------LKNNDIKPTDDSFKYKQ------HEIQSVIKAIWNGKEFVDTAPKGT 509 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA---------EGIFVH--HA 558 + VV + + FYAE GGQ+ D G +L D QK A G +H + Sbjct: 510 LIGVVLENSNFYAEQGGQIYDIG-------QLSFIDDQKTAFDVKDCKVFGGYVLHIGYL 562 Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 E L+ + LT+DY R + NH++TH++++AL ILG + Q GS + R Sbjct: 563 SYECDSLKVGDRVELTVDYTRRSPIMSNHTSTHMVNYALKNILGDGIDQRGSFVDAQRFR 622 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677 FD + + IT EL I+ VND I + L V + + A +G A+ G Y D VR Sbjct: 623 FDFSFGRAITKDELIKIDQIVNDQIFKQLDVHAKEVGLASAKKINGLRAVFGEVYPDPVR 682 Query: 678 -----------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 + + + +S CGGTH+S+T + L I SE ++ AG+RRI A+ Sbjct: 683 VVSVGVPVEQLIENPTNPEWANYSIEFCGGTHLSNTKQAELFTITSEETLGAGVRRIVAV 742 Query: 727 TGQRARSHL 735 TG A S + Sbjct: 743 TGSEAASAI 751 >gi|6176440|gb|AAF05592.1|AF188717_1 alanyl-tRNA synthetase [Dictyostelium discoideum] Length = 946 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 276/789 (34%), Positives = 412/789 (52%), Gaps = 95/789 (12%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 +V+ IR TF++FF +K H +PSS++IP +DPTL+F N+GM FK IF GQ P Sbjct: 2 DVNQIRKTFIDFFREKYEHTFVPSSAVIPHDDPTLLFANAGMNQFKPIFLGQVNPKSEQA 61 Query: 57 -VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + +AV + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AI AW+LLT Sbjct: 62 KLKRAVNS-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLT 120 Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + LD+ RLY+T + + D EA LW + L ++++ +NFW M + G Sbjct: 121 EVYKLDKERLYVTYFRGDPEKGLEADLEAKNLW--LQYLPEERVLPFGMKENFWEMGDQG 178 Query: 168 PCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 PCGPCSEI +D+ E G G+S + IEIWNLVF+Q+ ++ + LP+ + Sbjct: 179 PCGPCSEIHYDKVE----GRDGASFVNADDPTLIEIWNLVFIQYNREADKSLRPLPQKHV 234 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK--------YEGNNIVN--HRV 274 DTGMGLER+ +++Q+ NYD D+F + A ++VTG E V+ +RV Sbjct: 235 DTGMGLERLTSIIQKVPTNYDTDVFMPIFAAIQEVTGYPEPYGGKVGAEDTQQVDMAYRV 294 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEM 333 I DH+R+ +F IADG P+ +GRG VLRRI+RRA+ Y + L L+ + Sbjct: 295 IADHIRTLTFSIADGAAPSVDGRGQVLRRILRRAVRYGKQKLNAPTGFFSKLVDVVIANF 354 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393 G +PEL + I+ L E++ F KTL++G+V + ++ + L+ + A+ L Sbjct: 355 GEFFPELRKKPEHIKMVLTREEDMFNKTLEKGIVEFEKMIKK-SVNNTLSAENAYFLSTC 413 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQ----RSRARAHSLGLGSGTTEKIWFSLK 449 +G P+D+ I+ +DI + E Q R R + + L G W Sbjct: 414 YGFPIDLTT-IMAEEKNYKVDIKGYEGLCEAQSEIDRKRQKEKKVELTLGAEANAW---- 468 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 L+ + D ++ + + S++KAI E V+ A G Sbjct: 469 -------------LKNNDIKPTDDSFKYKQ------HEIQSVIKAIWNGKEFVDTAPKGT 509 Query: 510 KVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA---------EGIFVH--HA 558 + VV + + FYAE GGQ+ D G +L D QK A G +H + Sbjct: 510 LIGVVLENSNFYAEQGGQIYDIG-------QLSFIDDQKTAFDVKDCKVFGGYVLHIGYL 562 Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 E L+ + LT+DY R + NH++TH++++AL ILG + Q GS + R Sbjct: 563 SYECDSLKVGDRVELTVDYTRRSPIMSNHTSTHMVNYALKNILGDGIDQRGSFVDAQRFR 622 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677 FD + + IT EL I+ VND I + L V + + A +G A+ G Y D VR Sbjct: 623 FDFSFGRAITKDELIKIDQIVNDQIFKQLDVHAKEVGLASAKKINGLRAVFGEVYPDPVR 682 Query: 678 -----------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 + + + +S CGGTH+S+T + L I SE ++ AG+RRI A+ Sbjct: 683 VVSVGVPVEQLIENPTNPEWANYSIEFCGGTHLSNTKQAELFTITSEETLGAGVRRIVAV 742 Query: 727 TGQRARSHL 735 TG A S + Sbjct: 743 TGSEAASAI 751 >gi|185178972|ref|ZP_02964729.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|184209253|gb|EDU06296.1| alanyl-tRNA synthetase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] Length = 906 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 285/947 (30%), Positives = 476/947 (50%), Gaps = 103/947 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 6 TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D + Sbjct: 66 SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLIDVLKIDVK 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TV+++D+ + W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 122 KLWVTVFEDDQFTYDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGEHF 179 Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Q Sbjct: 180 DPNKVGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287 + N+D D+F + ++ EQ + KY+ N N +N ++VI DH+R++ F IA Sbjct: 240 DVPTNFDSDVFMQITKSVEQFSEYKYDMNEYFHPNVAQNKINFAYKVIADHMRATVFAIA 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346 DG +P+N+ RGY+LRR++RR M R L L + ++ A+ + M Y L K L Sbjct: 300 DGAIPSNKERGYILRRLIRRTMILVRRLNINNLLWVDAVVNAIASTMSDFYTYLKDEKTL 359 Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I+ L E + F KTL GL + + + ++ L+ D+ FKL DT+G P++++++I Sbjct: 360 AKIKMILNKEVQLFEKTLQLGLNIFESSIH----NQELDKDITFKLVDTYGFPIELIKEI 415 Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 C + +D+ +F+ + + S+A +L + E SL + + F Y++ Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLVSKANKANLKVMESQNE----SLMQLDVDSTF-HYEI 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 + + I+ + E+V + + + VVFD T FYA Sbjct: 470 FKWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 +GGQ DTG I + + + DV K VHH V+ L ++L I+ Q+R+ Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEYVILQINEQDRKS 565 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N++ Sbjct: 566 ITANHTAEHLLHYCLKQVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699 + N V M+ ++A A GAAA Y ++RV+ + G S LCGGTH Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740 T EI + IV +S AG RI +TG +++L D Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVEYLNEINHLKANLDINDH 739 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794 KL L + + + + + E++ +L+ K++ + ++ + I D+ Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFTELKQTLINFKIEFDKQN-AKQAIIDIKNTFNA 798 Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851 N H+ D+K + + ++ L + Q+ + + + E K L+ + E N Sbjct: 799 QQTNKRIHVFKNTDNKNIFNALNELINENQNTLFISFNLD-ENKIQYLLAINEKFATT-N 856 Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++L + ++ + G GGG+P+ Q G K D+ + + ++ Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTAIDKWV 903 >gi|156054306|ref|XP_001593079.1| hypothetical protein SS1G_06001 [Sclerotinia sclerotiorum 1980] gi|154703781|gb|EDO03520.1| hypothetical protein SS1G_06001 [Sclerotinia sclerotiorum 1980 UF-70] Length = 936 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 320/971 (32%), Positives = 480/971 (49%), Gaps = 148/971 (15%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R FL FF+K+ H ++PSSS++P NDPTL+FTN+GM FK IF G + + Sbjct: 15 VRKEFLNFFEKHAHSVVPSSSVVPHNDPTLLFTNAGMNQFKPIFLG----TVGKTDDMAQ 70 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 RA DLD+VG+ + HH+ AI +AW+LLTK + LD RLY Sbjct: 71 LKRAVDTQKDLDDVGKDSYHHS----------------DAIAMAWELLTKVYGLDPDRLY 114 Query: 127 ITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T ++ D EA +LW K +G+ D I+ DNFW M ETGPCGPCSEI +D Sbjct: 115 VTYFEGDSENNVPADTEAKELWLK-AGVKEDHILTGNMKDNFWEMGETGPCGPCSEIHYD 173 Query: 179 QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + I GG + +++ +EIWN+VF+QF++Q + LP IDTGMG ER+ + Sbjct: 174 R---IGGGRNAAHLVNQDDPNVLEIWNIVFIQFDRQKDRSLKTLPAKHIDTGMGYERLVS 230 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGM-----KYEGNNI----VNHRVIVDHLRSSSFLI 286 VLQ+K++NYD D+F L ++VT KY ++ +RVI DH+R +F I Sbjct: 231 VLQDKSSNYDTDVFSPLFAKIQEVTQARPYTDKYGKDDTDGIDTAYRVIADHIRLLTFAI 290 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAK 344 +DG +P NEGRGYV+RR++RR YAR E +LPAL +MG +PE+++ + Sbjct: 291 SDGGVPNNEGRGYVVRRVLRRGSRYARKYFNAEIGSFFSKILPALVEQMGEQFPEIVKKQ 350 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI--LNGDVAFKLYDTHGLPLDIMQ 402 ++E L E+E F +TLDRG + + + K L+G ++LYDT G P D+ + Sbjct: 351 QDVKEILDEEEEAFARTLDRGEKMFEKYAAQAIKTNTKKLSGADVWRLYDTFGFPEDLTK 410 Query: 403 DILCARGLA---GIDIISFNQALEEQRS-RARAHSLG------------LG-SGTTEKIW 445 + RGL G I+ +A E +S + AH+ +G + T + Sbjct: 411 IMAEERGLETDEGEIEIAKEKAREASKSVKEAAHTFAKLDVHQIAELDNIGIARTNDDAK 470 Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA 505 FS + G Q I YD G F+K + KP Sbjct: 471 FSKGDSTGKVQLI-YD---GKSFLKSTADLPSDKP------------------------- 501 Query: 506 VSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGI-RLQITDVQKKAEGIFVHHAIVERGI 564 ++ D+T FYAE GGQ+ DTG I DG+ ++ D Q G VH+ ++ G Sbjct: 502 -----FGILLDKTNFYAEQGGQVFDTGKIIIDGVAEFKVLDTQAYG-GYIVHNGYMDYGN 555 Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHS 624 + ++ D R+ + NH+ TH+L+HAL LG ++Q GS + + LRFD +H Sbjct: 556 FKAGDEVICEYDELRRQPIRNNHTGTHILNHALREHLGEDINQKGSLVDQEKLRFDFSHK 615 Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY 683 +T ELK IED+ N I QN + ++ ++ + A A G A+ G Y + VRVVSV Sbjct: 616 AQVTLPELKKIEDSSNSYIKQNCKIYSKDVDLDTAKAIEGVRAVFGETYPNPVRVVSVGV 675 Query: 684 E-----------DGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG---- 728 E + S CGGTHV TG I L IV ES I GIRRI A TG Sbjct: 676 EIDVLLAEPKNPEWRKVSVEFCGGTHVDQTGIIKDLVIVEESGIAKGIRRIIAYTGDAAH 735 Query: 729 --QRARS-------------HLMGQDEKLKSLASFLKVSQGNVVGRVE----------EI 763 QR S H + +++++K+ + L +V+ + + ++ Sbjct: 736 EIQRVASEFGKRIAALDAMPHGVEKEQEVKATQNDLNHLTISVLTKEDLKKKFTKVQKDV 795 Query: 764 WEEYRKLQLIHAKRKLQLNVEDLSCHKIAD-VNFMSHIISEVDSKELKSVMDALQKKIQS 822 +E +K Q +K L + K D + +++ + +SK + VM+ + K + Sbjct: 796 LDEQKKKQKAESKTALDTVTAHFADPKNKDSIAYIAQLPISANSKAIAEVMNHFKSKAKE 855 Query: 823 GIIMLVGISKEKKASV--LIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG-G 879 + L G S + A V + V T+ +A A ++V+GG GG P ++G G Sbjct: 856 KTVYLFGGSASEGAVVHGVYVGTDAASKGVSAEQWAAAVSEVIGGRSGGKEP--TRTGQG 913 Query: 880 PNGNKADQAIA 890 N +K D A+A Sbjct: 914 TNADKIDDAVA 924 >gi|60594334|pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium gi|60594335|pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium gi|60594336|pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex With L-Alanine gi|60594337|pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex With L-Alanine gi|60594338|pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl- Trna Synthetase In Complex Wtih Glycine gi|60594346|pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine Length = 465 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/457 (45%), Positives = 298/457 (65%), Gaps = 14/457 (3%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ T+ QK Sbjct: 8 IRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQK 67 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ L + +LY Sbjct: 68 CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLY 127 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++VY +DEEA+++W + G+ +++I R+ DNFW M + GPCGP SEI+ D+GE G Sbjct: 128 VSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEG- 186 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ K +N++I Sbjct: 187 -------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEI 239 Query: 247 DLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D+ LIQ E+V+G KY + V RVI DHLR+ +F I+DG++P+NEGRGYV+RRI Sbjct: 240 DIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRI 299 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRAM + LG P + + + M YPEL ++ ++ ++ E++RF KTL Sbjct: 300 LRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKA 359 Query: 365 GLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 G+ + V+ ++ + L+G F YDT+G P+D++ +I +GL GID+ F L Sbjct: 360 GMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGFQCEL 418 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 EEQR RAR H + + + ++ LKE + F+G Sbjct: 419 EEQRERARKH-FKVEAKKVKPVYSHLKELGKTSAFVG 454 >gi|242556759|pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/457 (45%), Positives = 298/457 (65%), Gaps = 14/457 (3%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL FF+K GH + S+ L+P NDPTL+F N+GMVPFKN+F G EK Y+ T+ QK Sbjct: 7 IRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQK 66 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+R GKHNDL+ VG T+RHHTFFEMLGNFSFG YFK+ AI+ AW+ +T+ L + +LY Sbjct: 67 CLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLY 126 Query: 127 ITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGG 186 ++VY +DEEA+++W + G+ +++I R+ DNFW M + GPCGP SEI+ D+GE G Sbjct: 127 VSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYEG- 185 Query: 187 LPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDI 246 ERY+EIWNLVFMQ+ + LP +IDTGMGLER+A+VLQ K +N++I Sbjct: 186 -------DERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSNFEI 238 Query: 247 DLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRI 304 D+ LIQ E+V+G KY + V RVI DHLR+ +F I+DG++P+NEGRGYV+RRI Sbjct: 239 DIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRI 298 Query: 305 MRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDR 364 +RRAM + LG P + + + M YPEL ++ ++ ++ E++RF KTL Sbjct: 299 LRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKA 358 Query: 365 GLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQAL 422 G+ + V+ ++ + L+G F YDT+G P+D++ +I +GL GID+ F L Sbjct: 359 GMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGL-GIDLEGFQCEL 417 Query: 423 EEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 EEQR RAR H + + + ++ LKE + F+G Sbjct: 418 EEQRERARKH-FKVEAKKVKPVYSHLKELGKTSAFVG 453 >gi|154288058|ref|XP_001544824.1| hypothetical protein HCAG_01871 [Ajellomyces capsulatus NAm1] gi|150408465|gb|EDN04006.1| hypothetical protein HCAG_01871 [Ajellomyces capsulatus NAm1] Length = 910 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 322/973 (33%), Positives = 464/973 (47%), Gaps = 162/973 (16%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT---- 62 +R FL+FF++NGH +PSSS++P +DPTL+FTN+GM +K+IF G P T Sbjct: 17 VRNAFLDFFKENGHTFVPSSSVVPLSDPTLLFTNAGMNQYKSIFLGTVDPNSDFATLRRA 76 Query: 63 -TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AI+ +WDLLTK + L+ Sbjct: 77 HNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIRYSWDLLTKVYGLN 136 Query: 122 QRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLY+T ++ D EA +LW + G++ D ++ DNFW M E GPCGPCS Sbjct: 137 PARLYVTYFEGNPDAGIGPDLEAKELWLSV-GVAEDHLLSGNMKDNFWEMGEQGPCGPCS 195 Query: 174 EIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGL 230 EI +D+ GG S +++ +EIWN VF+Q+ ++ + LP +DTGMG Sbjct: 196 EIHYDR----IGGRNASHLVNQDDPNVLEIWNNVFIQYNREPDKSLRPLPNKHVDTGMGY 251 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRS 281 ER+ ++LQ K++NYD D+F L ++TG + Y G + I +RV+ DH+R+ Sbjct: 252 ERLVSILQNKSSNYDTDVFTPLFGKISEITGCRPYTGKFHDEDTDGIDTAYRVVADHVRT 311 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPE 339 +F I+DG P NEGRGYV+RR++RR YAR E ++P L +MG +PE Sbjct: 312 LTFAISDGASPNNEGRGYVVRRVLRRGARYARKYLNVEIGGFFSKIVPTLVDQMGDMFPE 371 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVL-----LDGVLSHLGKDEILNGDVAFKLYDTH 394 + + + + E L E+ F KTLDRG L L GK L+G ++LYDT Sbjct: 372 IRRKQTDVMEILDEEEISFAKTLDRGERLFEEYALQAKQKGFGK---LHGADVWRLYDTF 428 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + RGL ID N EE R +A+ S G G T + + ++ Sbjct: 429 GFPVDLTRLMAEERGLT-ID----NAEFEEARLKAKEASKGQGKRTADVVKLTV------ 477 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA---VSGQKV 511 +DL G ED + N ++S +KAI V+ G++ Sbjct: 478 -----HDL--GLLETMEDVPKTNEDAKFGRGN-ITSQIKAIYYNKNFVDSTKHIPQGEQF 529 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 ++ D+T FYAE GGQ DTG I DG L + DVQ +GI + ++V LR + S Sbjct: 530 GIILDRTNFYAEQGGQENDTGKIIIDGKAELAVEDVQVLGDGIEHNGSLVAAEKLRFDFS 589 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 H ++ + Sbjct: 590 ----------------------------------------------------HKSAVSDS 597 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS--VEYED-- 685 +L+ IE D I QN V + + A SG A+ G Y D VRVVS VE E+ Sbjct: 598 DLEKIERISTDYIRQNCAVYAKDVPLATARGISGVRAVFGETYPDPVRVVSVGVELEEIL 657 Query: 686 GGVH-------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 VH S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 658 QNVHDPRWKDISIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEEAHEVQRIA 717 Query: 739 DEKLKSLASFLKVSQGN----------------VVGRVE-------------EIWEEYRK 769 E + L F K+ G + VE ++ E + Sbjct: 718 KEFGERLRRFEKMELGPQKEIEAKLLQVDLNQLSISAVEKARFREQFAQIHKKVLEGQKA 777 Query: 770 LQLIHAKRKLQ--LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML 827 Q + +K+ L + +K+A M IS + K L ++ ++ K+Q + + Sbjct: 778 AQKLESKKALDAITGYFEAPENKVAPHLVMQLPIS-ANPKALSDSLNFVKTKMQDKSVYV 836 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAV--DLARLSAKVLGGGGGGGRPHMAQSGGPNGNKA 885 KE V L A D A + ++GG GG P ++ G K Sbjct: 837 FAADKEAGKVVHGCHVAQALSEQGATPNDWANTVSSIVGGRAGGKAP-ISIGNGTEAEKL 895 Query: 886 DQAIAGVASFLKK 898 D+AI +L+K Sbjct: 896 DEAIKAATEYLEK 908 >gi|58268868|ref|XP_571590.1| alanine-tRNA ligase [Cryptococcus neoformans var. neoformans JEC21] gi|134113024|ref|XP_774788.1| hypothetical protein CNBF2180 [Cryptococcus neoformans var. neoformans B-3501A] gi|50257434|gb|EAL20141.1| hypothetical protein CNBF2180 [Cryptococcus neoformans var. neoformans B-3501A] gi|57227825|gb|AAW44283.1| alanine-tRNA ligase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 1012 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 276/776 (35%), Positives = 405/776 (52%), Gaps = 72/776 (9%) Query: 4 VSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + +R TF+++F H PSS ++P +D TL+F N+GM +K +F G P + Sbjct: 62 AAKVRQTFIDYFVNQPGFEHTFWPSSGVVPFDDDTLLFANAGMNQYKPLFLGTADPKSEL 121 Query: 61 VTTV-----QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK A+ +AWDLLT Sbjct: 122 SKLIRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKVGALTMAWDLLT 181 Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + L + RLY+T + + D EA ++W+ + G+ I+ DNFW M TG Sbjct: 182 RVYGLPKDRLYVTYFEGDAKQGLEPDSEAQQIWRDL-GVPESHILPGNAKDNFWEMGATG 240 Query: 168 PCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 PCGPCSEI FD+ GG + + + +EIWN VF+Q+ ++ E LP + Sbjct: 241 PCGPCSEIHFDR----IGGRDAAHLVNADDPNVLEIWNNVFIQYNREPSGELRTLPAKHV 296 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVI 275 DTGMG ER+ +VL ++NYD D+F + +++TG + YEG + I +RVI Sbjct: 297 DTGMGFERLVSVLHNVSSNYDTDVFTPIFSKIQELTGARPYEGKLGDEDKDGIDTAYRVI 356 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA--RLLGYTEPLMMHLLPALCTEM 333 DH+R+ + I+DG +P +GRGYVLRR++RR + YA + L+P + + Sbjct: 357 ADHIRTLTIAISDGGIPDKDGRGYVLRRVLRRGVRYASNKFGVKIGTFFSSLVPTVVESL 416 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLY 391 G +PE+ + + E L E+ F +TL+RG L + + K +L+G ++LY Sbjct: 417 GPIFPEVTKKIPELTEILNEEEASFARTLNRGEALFNKYATTAIDEKRTVLSGKDIWRLY 476 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 DT+G P+D+ Q + RGL ID +F +A E ++A KEK Sbjct: 477 DTYGFPVDLTQIMAEERGLK-IDQEAFEKARLESLEASKAGG---------------KEK 520 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSG 508 GA + D+ + D + + + VK+I + + E Sbjct: 521 AGA--LVKLDVHDLAALEANDAVPKTDDSFKYHLDDIKANVKSIYHGSKFLNSTSELPPN 578 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRT 567 ++ D+T FYAE+GGQ DTG DG ++ DVQ G +H +E G + Sbjct: 579 TTFGILLDRTNFYAESGGQEYDTGVIAIDGKAEFKVEDVQ-VYNGYVLHIGRMEEGDIEI 637 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 ++ T D R + NH+ TH+L+ AL +LG H+ Q GS + P LRFD +H K I Sbjct: 638 GDEVICTYDELRRWPIRNNHTGTHILNFALREVLGDHIDQKGSLVAPTKLRFDFSHGKSI 697 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY--- 683 EL IE ND I + +PV + M +A G A+ G Y D VRVVS+ Y Sbjct: 698 AVPELIKIEGICNDWIKRGVPVYAKDMPLAEAYKIPGLRAVFGEAYPDPVRVVSLGYPLE 757 Query: 684 ------EDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 ED +++ CGGTHV+ T +I I+ ESSI GIRRI A+TG A Sbjct: 758 DIAKNVEDSKWRQTSIEFCGGTHVAKTDDIKDFVIIEESSIAKGIRRIVAVTGHDA 813 >gi|224047577|ref|XP_002187191.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial [Taeniopygia guttata] Length = 986 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 299/889 (33%), Positives = 445/889 (50%), Gaps = 103/889 (11%) Query: 7 IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60 IR FL FF+ ++GH LPS+ + P DP L+F N+GM FK IF G P Y+ Sbjct: 36 IRAAFLRFFEERHGHRRLPSAPVRPRGDPRLLFVNAGMNQFKPIFLGTVHPRSELAQYRR 95 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKCVRAGGKHNDL++VGR HHTFFEMLGN+SFG YFKE A +AW+LLT+ +++ Sbjct: 96 VVNSQKCVRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYFKEEACSMAWELLTEVYEI 155 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+T + DEE +W + G+ A ++ DNFW M +TGPCGPC Sbjct: 156 PRDRLYVTYFGGDPSLGLSADEECRDVWLHL-GVPASHVLPFPLKDNFWEMGDTGPCGPC 214 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +EI +D + GG ++ + +EIWNLVFMQ+ ++ + LP+ +DTGMG Sbjct: 215 TEIHYDH---VGGGRNAAALVNQGSPDVVEIWNLVFMQYSREVEGNLLPLPQHHVDTGMG 271 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYE---GNNIVN-----HRVIVDHLR 280 LER+ TVLQ K ++YD DLF ++ A +V +Y+ GN V +RV+ DH+R Sbjct: 272 LERLVTVLQNKRSSYDTDLFTPILDAIHKVCRAPRYQGLVGNADVGRVNMAYRVVADHVR 331 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339 + I DGI P G VLRRI+RRA+ + + P L+ L+P + +G AYPE Sbjct: 332 TLCVCITDGIYPGFSGAELVLRRILRRAVRFCSEVLQAPPGLLASLVPTVVEVLGDAYPE 391 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + I++ L + F +L+RG +++ + + +VA+ LY + G PLD Sbjct: 392 LTRNANQIKDILNENEAAFLSSLERGRRIIERTVQQMEPSTNFPAEVAWSLYGSLGFPLD 451 Query: 400 IMQDILCARGLAGIDIISFNQ-ALEEQRSRARAHSLG-LGSGTTEKIWFSLKEKYGATQF 457 ++ +L +G++ +D +FN+ ALE+ + +A G G+ T SL Sbjct: 452 LIDLMLEEKGIS-LDSAAFNKLALEDAKRKAGGPQAGQTGTANTRLDVHSLA-------- 502 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV---------SSIVKAIVQQGEIVEEAVSG 508 L+GS D P T G+ + V + + + +E +G Sbjct: 503 ----WLQGSSVPTTD-----DSPKYTYTLGLHGQYEFSPCQATVLMLYKDQSLHKEVGAG 553 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI-----FVHHAIVERG 563 Q+ V+ D+T FYAE GGQ D G IRL DV E + +V H + Sbjct: 554 QRCGVILDRTNFYAEQGGQDSDQGYM----IRLGQQDVLFPVESVHLCGGYVIHEVTAVE 609 Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623 LR + L +D R NH+ATHLL AL +LG Q GS +T LRFD Sbjct: 610 TLRAGDQVQLFVDEAQRLACMRNHTATHLLSFALRRVLGDSTEQRGSHVTAQQLRFDFDT 669 Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAAL--LGTKYNDRVRVVSV 681 +T +L+ +E V D+I +N V + +A L + +Y D VR+VS+ Sbjct: 670 KGHVTVEQLQQVEQVVRDLIQKN--EVVHMAEVPLTLARRVQGLRAVDEEYPDPVRIVSL 727 Query: 682 EYEDGGV----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 V S LC GTH+ TG + L I+SE + GI R+ A+TG RA Sbjct: 728 GVPVENVLTCDSKAAMQTSVELCCGTHLLQTGSVEDLAIISERQLVKGISRVIAVTGGRA 787 Query: 732 RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791 + + + + L V +V R+++ ++ I + L V L+ K+ Sbjct: 788 K--------EAREVGQCLAVEVDSVSLRMKQ------RITSIPEMQNLSKEVGQLT--KV 831 Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 S + + KEL++++ ALQ+ + I L EK A +L+ Sbjct: 832 V----ASTAMPQWQRKELQTILKALQRTANTAIKKLELQQAEKVAQILL 876 >gi|268561116|ref|XP_002646367.1| C. briggsae CBR-ARS-2 protein [Caenorhabditis briggsae] gi|187029911|emb|CAP31121.1| CBR-AARS-2 protein [Caenorhabditis briggsae AF16] Length = 967 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 276/777 (35%), Positives = 418/777 (53%), Gaps = 70/777 (9%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------ 56 S +R+TF+EFF +K H + SSS+IP +DPTL+F N+GM FK +F G P Sbjct: 6 ASEVRSTFIEFFREKKNHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLAK 65 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + +AV T QKC+RAGGKHNDLD+VG+ HHT+FEMLGN+SFG YFK+ I AW+LLT Sbjct: 66 LKRAVNT-QKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLTT 124 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + RLY++V+ DE EA ++W+ + G+ ++I+ DNFW M + GP Sbjct: 125 VYGIPAERLYVSVFGGDEANGVPADSEAREIWRSV-GVPEERILNFGMKDNFWEMGDVGP 183 Query: 169 CGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CGPCSEI +D+ G L + + +EIWNLVF+QF ++ LP ID G Sbjct: 184 CGPCSEIHYDRIGNRDASHLVNADD--PMVVEIWNLVFIQFNREEGGALKSLPAKHIDCG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278 +GLER+ V+Q+KT+NYD D+F+ + + + +G++ +I + +RV+ DH Sbjct: 242 LGLERLIAVMQDKTSNYDTDIFQPIFEEITKKSGVRAYTGHIGDEDKDGVDMAYRVVADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337 +R+ + ++DG P N GRGYVLRRI+RR + YA +P L+P + + +G + Sbjct: 302 IRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYATEKLNAQPGFFAALVPVVISILGDTF 361 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL-GKDEILNGDVAFKLYDTHGL 396 PEL + + + + + E+++F KTL RG VL + L + GD+A++LYDT+G Sbjct: 362 PELKRDPVTVMDIINDEEKQFLKTLSRGRVLFQRAVDSLPAGTKTFPGDIAWRLYDTYGF 421 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRA-RAHSLGLGS--GTTEKIWFSLKEKYG 453 P D+ Q + +GL+ +D +F E+ R +A S G G T + +L E Sbjct: 422 PADLTQLMAEEKGLS-VDETAF----EDARKKAIETSSAGAGKFRDTLDLDVHALAE--- 473 Query: 454 ATQFIGYDLLRGS-----KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSG 508 Q G S F E + + + P V I+ AI + G+ V++ V+G Sbjct: 474 -LQQKGIPTTDDSPKYAYSFTGEGSEAVYKFEPC-----VGKIL-AIRRDGKFVDQLVAG 526 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRT 567 ++ V+ D+T FYAE GGQ+ D G G +V + G ++ G Sbjct: 527 EEGAVLLDRTNFYAEQGGQIYDVGVLSKSGDESNEFNVSNCQVRGGYIVLVGSAEGSFSV 586 Query: 568 EMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 ++ D ++R+QL + NH+ TH+L++AL +L Q GS + PD +RFD T+ Sbjct: 587 GDNVNQRFD-EDRKQLIMKNHTGTHVLNYALRKVLADS-DQKGSLVAPDRMRFDFTNKAA 644 Query: 627 ITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV---- 681 +T ++K E+ +I V + EDA +G A+ Y D VRVV+V Sbjct: 645 MTPEQVKQAEEYAQQLINAKGQVYAKNSPLEDAKKINGLRAMFDETYPDPVRVVAVGTPV 704 Query: 682 -------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E E G + CGGTH+ + I + I SE +I GIRRI A+TG A Sbjct: 705 EQLLQNPEAEAGQNTTVEFCGGTHLQNVSHIGRIVISSEEAIAKGIRRIVALTGPEA 761 >gi|145346253|ref|XP_001417607.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577834|gb|ABO95900.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 967 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 271/765 (35%), Positives = 407/765 (53%), Gaps = 67/765 (8%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 S +R TF+ +F +K GH PSS +P NDPTL+F N+GM +K IF G+ P Sbjct: 31 SRVRDTFVNYFIEKQGHVNWPSSPAVPVNDPTLLFANAGMNQYKPIFLGKADPKTAFAKL 90 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI +AWDLLT + Sbjct: 91 TRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGMAWDLLTNVY 150 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L RLY T + DE EA +W K L +++ DNFW M + GPCG Sbjct: 151 GLAPDRLYATYFGGDESQGLQPDLEAKAIWLKY--LPESRVMPFGCADNFWEMGDVGPCG 208 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PC+EI +D+ GG +S + +EIWN+VF+Q+ ++ LP +DTG Sbjct: 209 PCTEIHYDR----IGGRDAASLVNMDDPNCLEIWNVVFIQYNREEGGVLKSLPSKHVDTG 264 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYE--------GNNIVNHRVIVDH 278 MG ER+ ++LQ K +NYD D+F + + ++++G Y G + +RV+ DH Sbjct: 265 MGFERLTSILQNKMSNYDTDVFMPIFKEIQRISGAAPYTGLLGKEDVGEKDMAYRVVADH 324 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAY 337 +R+ S IADG P ++GR YVLRR++RRA+ + R LG + L+P L ++G+ + Sbjct: 325 IRTLSIAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFHKLVPCLIQQLGAVF 384 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHG 395 PEL+ + I E + E+E FG+TL +G+ VL+ ++ +++G AF L++++G Sbjct: 385 PELVAKQTHITEIIADEEESFGRTLQKGIDQFGKVLAAAKQEGRTVISGPEAFLLWESYG 444 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P D+ + + G +D F QA E + ++RA G SG + ++ + AT Sbjct: 445 FPNDLTELMAEENGFT-LDNEGFAQAFAEAQEKSRAG--GKKSGGVQLLF-----EAEAT 496 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 ++ + G K++ K +P ++ S V AI+ ++ + F Sbjct: 497 AWLQNN---GVAITKDEEKYASGRPTLE------STVTAIMSPSGFIKSTSDAEGPYGFF 547 Query: 516 -DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D T FYAE+GGQ+ D+G + ++DV K +V H G + + Sbjct: 548 MDATTFYAESGGQVCDSGLITTPSGSMSVSDV--KVAAAYVMHTGDVSGTVSVGDAAKCA 605 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +DY R + NH+ TH+L++AL ++G V Q GS + + LRFD +H+K T+ ++ Sbjct: 606 VDYDRRDNIMPNHTMTHVLNYALRKVMGDGVDQKGSLVDEEKLRFDFSHNKGATTKQIAE 665 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV-----------E 682 IE VN+ I L V R + + A+ +G A+ G Y D VRVVSV Sbjct: 666 IEAIVNEQIKSKLAVDKREVALDKAMTINGLRAVFGEVYPDPVRVVSVGPSIDDLLANPS 725 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAIT 727 + +S CGGTH++ST I+ ES I GIRRI T Sbjct: 726 DDKWKNYSIEFCGGTHLASTDFAEQFVILEESGIAKGIRRITGAT 770 >gi|209877330|ref|XP_002140107.1| alanyl-tRNA synthetase family protein [Cryptosporidium muris RN66] gi|209555713|gb|EEA05758.1| alanyl-tRNA synthetase family protein [Cryptosporidium muris RN66] Length = 984 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 302/839 (35%), Positives = 443/839 (52%), Gaps = 93/839 (11%) Query: 6 SIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA---- 60 ++R F++FF K H+ S+S+IP NDPTL+FTN+GM FK+IFT +P + Sbjct: 15 NVRQQFIDFFVNKANHKFYRSASVIPLNDPTLLFTNAGMNQFKSIFTETVEPNSELSKLV 74 Query: 61 -VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 V QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE AI+ A++LLTK ++ Sbjct: 75 RVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIKWAFELLTKVYE 134 Query: 120 LDQRRLYITVY--DE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + RLY+T + D+ DEEA +W ++ L ++II + +NFW MA+ GPCG Sbjct: 135 IPSERLYVTYFGGDDKLPACPVDEEARDIW--MNYLPKERIISCSAKENFWEMADVGPCG 192 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI FD+ GG S +++ IEIWNLVFMQ+ ++ +LP +DTG Sbjct: 193 PCSEIHFDR----IGGRDASHLVNKDDPSVIEIWNLVFMQYYRETDGSLVLLPAKCVDTG 248 Query: 228 MGLERMATVLQEKTNNYDIDLFKHL----------IQASEQVTGMKYEGNNI-VNHRVIV 276 MGLER+ +VLQ K +NYD DLF + I + + G K + N I +++RVI Sbjct: 249 MGLERLVSVLQNKLSNYDTDLFIPIFNQIHSIFPNIPQYKGMVGDKDDPNKIDMSYRVIA 308 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL---GYTEPLMMH-LLPALCTE 332 DH+R+ S I+DG +P+NEGRGYVLRRI+RRA+ Y R G + + L+ ++ Sbjct: 309 DHIRTLSVAISDGCIPSNEGRGYVLRRILRRAVRYGRQYFNAGMDGNMWFYKLVDSVSNI 368 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE------------ 380 +G YPE+++ K I+ + E+++F KTL +G+ + V + L K Sbjct: 369 LGDYYPEIVEKKDTIKSAIFEEEKQFSKTLGKGIERFNRVTNKLLKSSSPINSKLKNIRL 428 Query: 381 ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGT 440 I + AF+LY T+G P+D+ + I G+ D F + +E H L G Sbjct: 429 IFPANEAFQLYSTYGFPMDLTELIASELGME-FDHEGFKKCMEN-------HQLA-SEGK 479 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 K L K Q I LL+ + +D +L N + AI E Sbjct: 480 FNKKLDKLVLKPDIQQHI---LLKYGLNLTDDIY------KYNLNNECFGKLFAIYNGHE 530 Query: 501 IVEEAVSGQK-VEVVFDQTPFYAEAGGQLGDTGCA--IGDGI-RLQITDVQKKAEGIFVH 556 +++ A V ++FD+T +Y+E+GGQ+ D G D + Q+ D QK + +H Sbjct: 531 LIDTATCFHGIVGLIFDKTCYYSESGGQVSDIGYIELWEDNLNNFQVIDCQKFGNYV-LH 589 Query: 557 HAIVERGILRTEMSLVLTIDYQNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCITPD 615 +V G S + ++RR +++ NH+ATHLL++AL +LG Q GS + P Sbjct: 590 IGVVLEGKFSVGDSNCHFLIDKDRRVMTMRNHTATHLLNYALRLLLGEKCDQRGSIVEPT 649 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYND 674 LRFD + +K + E++ IED +N II V ++ A SG A+ G Y D Sbjct: 650 KLRFDFSANKALNINEIQQIEDIINKIIKDKQEVFCDVVPLNIAKEISGLRAIFGEAYPD 709 Query: 675 RVRVVSV-----EYEDGGVHSSA---------LCGGTHVSSTGEIMLLYIVSESSIRAGI 720 VRV+SV E D +S LCGGTHV +T +I I+SE I GI Sbjct: 710 PVRVLSVGIPVNELNDCNFGASKSLHIKTSVELCGGTHVLNTYDIGSFIILSEEGIAKGI 769 Query: 721 RRIEAITGQR---ARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAK 776 RRI A+T A + + K + L + G + + + +E R L LI K Sbjct: 770 RRIVAVTNDTANVAEDNTLILTSKFEQLKNIFGKELGKEITKCRVLLDETRILPLIKRK 828 >gi|260784931|ref|XP_002587517.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae] gi|229272665|gb|EEN43528.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae] Length = 751 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 270/765 (35%), Positives = 407/765 (53%), Gaps = 81/765 (10%) Query: 7 IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60 +R F+++F+ K+ H + SSS IP +DPTL+F N+GM FK IF G P Y+ Sbjct: 11 VRDMFIKYFEEKHEHLEVHSSSTIPLDDPTLLFANAGMNQFKPIFQGTVDPSHPMAKYRR 70 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ A AWDLL + L Sbjct: 71 VVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKEACSWAWDLLVNGYKL 130 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + R+Y+T + +E E ++W + G++ D+I+ + DNFW M E GPCGPC Sbjct: 131 EVERMYVTYFGGNEAQGLQPDLECRQIWLDL-GVAEDRILPGSMKDNFWEMGEVGPCGPC 189 Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI +D+ GG S + + +EIWNLVFMQ ++ LPK +ID GMG Sbjct: 190 SEIHYDR----VGGRDASHLVNMDVPEVLEIWNLVFMQNNREPDGSITNLPKKNIDCGMG 245 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLR 280 LER+ +V+Q +NYD DLF A ++ TG++ Y G + +RV+ DH R Sbjct: 246 LERILSVVQGVLSNYDTDLFTPFFDAIQKATGVRPYTGKVGADDADGIDMAYRVLADHAR 305 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + ++DG P N GRGYVLRRI+RR + YA L L+ +GSA+PE Sbjct: 306 TLTISMSDGGKPDNVGRGYVLRRILRRGVRYATEKLNAPRGFFASLVDVAVQTLGSAFPE 365 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 + + ++++ + E+E+F KTL RG +L+ ++ LG +++ G+ A+ LYDT+G P+D Sbjct: 366 ITKDPQMVKDIINEEEEQFLKTLSRGRRVLEKRITQLGDSKVVPGETAWLLYDTYGFPVD 425 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFS------LKEKYG 453 + + +GL +D ++ EE + +A+ S G G+G + + L+EK Sbjct: 426 LTSLMAEEKGLT-LDCAAY----EECKKQAQIRSQGKGAGVDDSVNLDVHAINELQEKGS 480 Query: 454 ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 D ++ +D +P ++ V ++ + + V+E GQ+ V Sbjct: 481 PPT----DDSPKYQYSHDDNGNYVFQP-------CTATVVSLRRDKQFVQEVTQGQECGV 529 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGD------GIRLQITDVQKKAEGIFVHHAIVERGILRT 567 + D+T FYAE GGQ+ D G + + + T + G +V H G L Sbjct: 530 LLDRTNFYAEQGGQIYDEGYLVKEEDEVKRTAETEFTVKNCQVRGGYVMHIGTLVGTLNV 589 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + L +D RR + NH++TH+L+ AL +LG Q GS + PD LRFD + + Sbjct: 590 GDKVKLFVDEARRRPIMSNHTSTHVLNFALRQVLG-EADQRGSLVAPDRLRFDFSAKGAM 648 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA-----ALLGTKYNDRVRVVS-- 680 T+A++K E N+II +N ++ +E A+A A A+ Y D VRV+S Sbjct: 649 TTAQIKEAEKICNEIIKKN----EQVYAKEAALAQAKAIQGLRAVFDETYPDPVRVLSIG 704 Query: 681 VEYED---------GGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + ED G V S CGGTH+ G L IV+E +I Sbjct: 705 ISVEDMLSDPTSPAGTVTSVEFCGGTHLQRVGHAGDLVIVTEEAI 749 >gi|186701671|ref|ZP_02971369.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186700919|gb|EDU19201.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 906 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 283/947 (29%), Positives = 472/947 (49%), Gaps = 103/947 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 6 TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D + Sbjct: 66 SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLINVLKIDVK 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TV+++D+ W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 122 KLWVTVFEDDQFTNDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGERF 179 Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Q Sbjct: 180 DPNKIGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287 + N+D D+F + ++ EQ + KY+ N N +N ++VI DH+R++ F IA Sbjct: 240 DVPTNFDSDVFMRITKSVEQFSEYKYDMNEYFHPNVTQNKINFAYKVIADHMRATVFAIA 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346 DG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K L Sbjct: 300 DGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVDAIASTMGDFYTYLKDEKTL 359 Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I+ L E + F KTL GL + + + +++ L+ ++ FKL DT+G P++++++I Sbjct: 360 TKIKMILNKEVQLFEKTLQLGLNIFENSI----RNQELDKEITFKLVDTYGFPIELIKEI 415 Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 C + +D+ +F+ + + S+A +L + E + + Y++ Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLISKANKANLKVMESQNESLM-----QLDVDSTFHYEI 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 R + I+ + E+V + + + VVFD T FYA Sbjct: 470 FRWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 +GGQ DTG I + + + DV K VHH V+ L ++L I+ Q+R+ Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEHVILQINEQDRKS 565 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N++ Sbjct: 566 ITANHTAEHLLHYCLKHVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699 + N V M+ ++A A GAAA Y ++RV+ + G S LCGGTH Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740 T EI + IV +S AG RI +TG + +L D Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVDYLNEINHLKVNLDINDH 739 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794 KL L + + + + + E++ +L+ K++ + ++ + I D+ Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFAELKQSLINFKIEFDKQN-AKQAIIDIKNTFNT 798 Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851 N H+ D+K + + ++ L + Q + + + + K L+ + E N Sbjct: 799 QLTNKRVHVFKNTDNKNIFNALNELINENQDTLFISFNLD-DNKIQYLLAINEKFA-TIN 856 Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++L + ++ + G GGG+P+ Q G K D+ + V ++ Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTVVDKWV 903 >gi|126653904|ref|ZP_01725751.1| alanyl-tRNA synthetase [Bacillus sp. B14905] gi|126589629|gb|EAZ83768.1| alanyl-tRNA synthetase [Bacillus sp. B14905] Length = 742 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 275/777 (35%), Positives = 415/777 (53%), Gaps = 66/777 (8%) Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQG------ECIPGGLPGSSEEGERYIEIWN 202 +++IR+ N FW + E GP GP SEIF+D+G E P PG E ERY+EIWN Sbjct: 2 ERLIRLEGN--FWDIGE-GPSGPNSEIFYDRGVEYGSDENDPEMYPGG--ENERYLEIWN 56 Query: 203 LVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM 262 LVF QF LPK +IDTGMGLER+ +V+Q N+D DLF +I+ E+ Sbjct: 57 LVFSQFNHNPDGTYTPLPKQNIDTGMGLERIVSVVQNVPTNFDTDLFMPIIEKIEEFANR 116 Query: 263 KYEGNNIVN--------------HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRA 308 KY+ + V+ +V+ DH+R+ +F I DG LP+NEGRGYVLRR++RRA Sbjct: 117 KYKRPSEVDLNEIFGSEEDINTPFKVVADHIRTVAFAIGDGALPSNEGRGYVLRRLLRRA 176 Query: 309 MCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVL 368 + YA+ +G +P M L+P + M YPE+ + I+ +++E+ RF +TLD GL + Sbjct: 177 VRYAKQIGIEKPFMFELVPTVGKIMEGFYPEVTEKSEFIQRVIKNEEIRFHETLDGGLAI 236 Query: 369 LDGVLSH---LGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQ 425 + V G D I D AF+LYDT+G P+++ ++ G+ +D F A+EEQ Sbjct: 237 FNEVAESQKAAGHDFIPGAD-AFRLYDTYGFPIELTEEYAEEVGMK-VDHEGFETAMEEQ 294 Query: 426 RSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT 485 R RARA + S + L A++F+G+D L + Sbjct: 295 RERARAARQDVDSMQVQN--EVLANLTVASEFVGFDTLVAN------------------- 333 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITD 545 + + A++ G++ + A GQ+ V+ QTPFYAE GGQ+ D+G D + D Sbjct: 334 ----TEIAAMIVNGQVEKVASEGQEALVILAQTPFYAEMGGQIADSGIISNDSFTAVVKD 389 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 VQK G +H +VE G + E ++ ++ +R + NH+ATH++ AL +LG HV Sbjct: 390 VQKAPNGQPLHTVVVESGEMHVEDAVQAIVNRDDRNLIIKNHTATHIMQRALKDVLGDHV 449 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 +Q GS + PD LRFD +H +T EL+ IE VN+ + ++ VV M + A GA Sbjct: 450 NQAGSYVGPDRLRFDFSHFGQVTKEELQQIERIVNEKVWDDIEVVIEEMAIDKAKEMGAM 509 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 AL G KY D VRVVS+ G +S LCGG HV + EI IVSE I AG RRIEA Sbjct: 510 ALFGEKYGDVVRVVSI-----GDYSIELCGGIHVKRSSEIGFFKIVSEGGIGAGTRRIEA 564 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-----LIHAKRKLQ 780 +TG+ A + ++ L A+ LK + ++V +V+ + +Y++LQ L Q Sbjct: 565 VTGKVAYEVVKEEEALLNDAAALLKANPKDIVTKVQALQGDYKELQRDNEALSQKIANAQ 624 Query: 781 LNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLI 840 + I DV +S + D+ +L+ +MD L+ K+ +I+L + +K Sbjct: 625 AGAIVDAAQTIGDVTVLSTKVEAKDNNQLRQMMDDLKVKMPKAVIVLGAVDGDKVMLCAG 684 Query: 841 VVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 V E + ++A ++ ++ A+ GG GGGRP MA +G +K D+A+ V ++K Sbjct: 685 VSKELVGGNYHAGNIVKMVAEAC-GGKGGGRPDMAMAGAKEASKLDEALLSVYDYVK 740 >gi|323455368|gb|EGB11236.1| hypothetical protein AURANDRAFT_52432 [Aureococcus anophagefferens] Length = 1017 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 288/792 (36%), Positives = 394/792 (49%), Gaps = 84/792 (10%) Query: 3 NVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 V +R TF+++F +K GH +PSS ++P DPTL+F N+GM FK IF GQ P Q Sbjct: 39 TVPRVRDTFVDYFAEKRGHTRVPSSGVVPLQDPTLLFANAGMNQFKPIFLGQAAPGTQLA 98 Query: 62 T-----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 T QKC+RAGGKHNDL++VG HHTFFEMLG++SFG YFK A A +LL Sbjct: 99 TLERACNSQKCIRAGGKHNDLEDVGLDTYHHTFFEMLGSWSFGDYFKAEATAWAKELLVD 158 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + LD R+Y T + + D EA LW +G +++I + DNFW M ++GP Sbjct: 159 VYGLDMDRMYATYFEGSPEEGLEPDYEARDLWLA-AGFKPEQVIPGSKADNFWEMGDSGP 217 Query: 169 CGPCSEIFFDQGECIPGGLPGSSE-------EGERYIEIWNLVFMQFEQQNKQERF-ILP 220 CGPC+E+ +D L G + + IEIWNLVF+QFE+ K +R LP Sbjct: 218 CGPCTELHYD-------ALGGRGDVAHLVNMDDPTVIEIWNLVFIQFERDGKTKRLSSLP 270 Query: 221 KMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQA--------SEQVTGMKYEGNNIVN- 271 +DTG+GLER+ +L + +NYD D F L A S G+ + + N Sbjct: 271 AQHVDTGLGLERLVAILNQVPSNYDTDAFSGLFAATLAELPEGSAPYGGLLGDDDKAQNY 330 Query: 272 ----HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLL 326 +R I DH+R SF IADG P+NEGRGYVLRRI+RRA+ Y LG M L Sbjct: 331 RDTAYRAIADHVRCLSFAIADGARPSNEGRGYVLRRILRRAVRYGLSTLGAEPGFMARLA 390 Query: 327 PAL-CTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGD 385 PAL + G YPEL I E L E+ F KTL+RG+ LD L L ++L GD Sbjct: 391 PALAASHFGDYYPELRDELPTIVEVLAEEEATFAKTLERGVKYLDEELDKLEATDVLGGD 450 Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIW 445 AF LYD+ G P+D+ + RG +D F A+ Q R++A + Sbjct: 451 AAFFLYDSLGFPVDLTAQMAEERGFL-VDEPGFEAAMRAQVDRSKADRKARAEAALGTVR 509 Query: 446 FSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI-VKAIVQQGEIVEE 504 L AT +G + + + V ++ V+ + + A +V+ Sbjct: 510 LEL--GVAATAALGDAGVAPTDALAVGATVADDATEVNGATVVALVAIDAATGDPALVDA 567 Query: 505 AV--SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER 562 A G V VV D TPFYAEAGGQ D G + G + + DVQ A G VH V Sbjct: 568 ATCGPGAAVGVVLDATPFYAEAGGQASDRGSLVLGGASVDVIDVQAYA-GYVVH--TVAS 624 Query: 563 GILRTEMSLVL------TIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDG 616 G +++L + +D RR+ ++NH TH ++HAL LG V Q GS + Sbjct: 625 G---ADVALAVGDAADGVVDGDARRKHAVNHMMTHAVNHALWAELGDGVGQRGSDANDER 681 Query: 617 LRFDVTHSKPITSAELKSIEDNVN-DIIAQNLPVVTRIMNREDAIASGA-AALLGTKYND 674 LRFD +H K + +A+L ++E VN + +A V + EDA A A+ G Y D Sbjct: 682 LRFDFSHGKALKAAQLAAVEAAVNTEYVADGATVERAKVGLEDAKNIRALRAVFGEAYPD 741 Query: 675 RVRVV-------------------SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 V VV S + E S LCGG H+ I E++ Sbjct: 742 PVNVVAMFPKAAFAGAPTIADVLASPDDEKWDKASIELCGGNHLGDAAAAEYFVITQETA 801 Query: 716 IRAGIRRIEAIT 727 + G+RRIEA+T Sbjct: 802 VAKGVRRIEALT 813 >gi|49119610|gb|AAH73734.1| LOC443692 protein [Xenopus laevis] Length = 1005 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 268/779 (34%), Positives = 410/779 (52%), Gaps = 73/779 (9%) Query: 3 NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP----- 56 + ++IR FL +FQ K+GH +PSSS+ P DP+L+F N+GM FK IF G P Sbjct: 53 SAAAIRRAFLRYFQEKHGHRHVPSSSVRPRGDPSLLFVNAGMNQFKPIFLGTADPRSDMA 112 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 Y+ V QKCVRAGGKHNDL++VGR HHTFFEMLGN+SFG YFKE A +AW LLT+ Sbjct: 113 QYRRVVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGNWSFGDYFKEEACSMAWQLLTQ 172 Query: 117 EFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + + RLY+T + D+E ++W + G+ +++ +NFW M ETGP Sbjct: 173 GYGIPEDRLYVTYFGGEPTLGLSADQETQEIWLSL-GVPPARLLPFGLKENFWEMGETGP 231 Query: 169 CGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSID 225 CGPC+EI +D GG +S ++ +EIWNLVFMQ+ +++ + +LP+ +D Sbjct: 232 CGPCTEIHYDH----VGGRNAASLVNQDSPDVVEIWNLVFMQYNRESDRSLRLLPQQHVD 287 Query: 226 TGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEG--------NNIVNHRVIV 276 TGMGLER+ TVLQ K +NYD DLF +++A + + +Y+G + + +RV+ Sbjct: 288 TGMGLERLVTVLQGKRSNYDTDLFSPILEAIMKGSRAPQYQGLMGKEDTEHTDMAYRVVA 347 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM-HLLPALCTEMGS 335 DH+R+ IADG+ P G VLRRI+RRA+ ++ + PL + L+P++ +G Sbjct: 348 DHIRTLCVCIADGVYPGMSGAELVLRRILRRAVRFSSEILRAPPLFLSSLVPSVVHVLGE 407 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 A+PEL + K I L +E F +L +G ++D L + + VA+ L+ G Sbjct: 408 AFPELEREKSQIMNILNENEEAFLISLQQGRRIIDRTLQQQEEPQTFPVGVAWSLHRNLG 467 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 PLD++ +L RG IS ++A + T E+ ++ + Sbjct: 468 FPLDLIGLMLEERG------ISLDKA-------------AMDHLTVEEAERKMRNQQADE 508 Query: 456 QFIGYDLLRGSKFMKEDRKVLC--QKPPIDLT---------NGVSSIVKAIVQQGEIVEE 504 G +L S + R V C P + T + V + + + E Sbjct: 509 AQTGLELDVHSMAELQRRGVPCTNDSPKYNYTLAADGKYVFGPCRATVLMLYKDHSLHSE 568 Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERG 563 GQ+ V+ DQT FYAE GGQ D G + + + V+ + G ++ H + Sbjct: 569 IDKGQRCGVILDQTCFYAEQGGQSCDQGYFVRKDQQEALFPVESVQVAGGYMLHEVTTPE 628 Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTH 623 +LR LVL +D +R H+ATHLL++ L +LG + Q GS +T + LRFDV+ Sbjct: 629 VLRVGDQLVLYLDEAHRLACMQKHTATHLLNYTLHQVLGENTVQRGSHVTAERLRFDVSV 688 Query: 624 SKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSV-- 681 + P+ +L+ +E + D+I+Q+ + T ++ A + Y + VRVVSV Sbjct: 689 TAPVHVEQLQEVEQVLQDLISQDEEIHTALVPLTAAKCVRGLRTVDEAYPNPVRVVSVGI 748 Query: 682 -------EYEDGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 + +S LC GTH+ +TG I + IVSE + GI R+ AITG+ A+ Sbjct: 749 PVDVALKPGSQAALQTSVELCCGTHLLTTGAIQDVVIVSERPLAKGITRLIAITGEEAK 807 >gi|13357929|ref|NP_078203.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762259|ref|YP_001752452.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920314|ref|ZP_02931660.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508708|ref|ZP_02958194.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|81624421|sp|Q9PQC2|SYA_UREPA RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|205830281|sp|B1AJ08|SYA_UREP2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|11271362|pir||D82899 alanyl-tRNA synthetase UU369 [imported] - Ureaplasma urealyticum gi|6899351|gb|AAF30778.1|AE002134_2 alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827836|gb|ACA33098.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902731|gb|EDT49020.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675631|gb|EDT87536.1| alanyl-tRNA synthetase [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 906 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 283/947 (29%), Positives = 472/947 (49%), Gaps = 103/947 (10%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 + IR ++EFF+ H + SLIP NDPTL++ NSG+ K+ F+G+ KP ++ + Sbjct: 6 TNEIRKKWIEFFESKDHLFIEPKSLIPKNDPTLLWINSGVSTLKDYFSGKVKPPHKRLVN 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 QK +R ND+ NVG T+RHHTFFEMLGNFS G YFK+ AI A++ L +D + Sbjct: 66 SQKAIRT----NDIFNVGLTSRHHTFFEMLGNFSIGDYFKKEAIDWAYEFLINVLKIDVK 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +L++TV+++D+ W K+ G+ ++II+ + NFW + GPCGPC+EI +D+GE Sbjct: 122 KLWVTVFEDDQFTNDEWIKL-GIIKEQIIKCNRDRNFWDVG-NGPCGPCTEIHYDRGERF 179 Query: 184 PGGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQ 238 GS E +RY+EIWN+VF QF L + +IDTG GLER+A + Q Sbjct: 180 DPNKIGSKLILEDIENDRYVEIWNIVFSQFNNDGHNNYTELLQKNIDTGAGLERIACISQ 239 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGN---------NIVN--HRVIVDHLRSSSFLIA 287 + N+D D+F + ++ EQ + KY+ N N +N ++VI DH+R++ F IA Sbjct: 240 DVPTNFDSDVFMRITKSVEQFSEYKYDMNEYFHPNVTQNKINFAYKVIADHMRATVFAIA 299 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGSAYPELIQAKLL 346 DG +P+N+ RGY+LRR++RR M R L L + ++ A+ + MG Y L K L Sbjct: 300 DGAIPSNKERGYILRRLIRRTMVLVRRLNINNLLWVDAVVDAIASTMGDFYTYLKDEKTL 359 Query: 347 --IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 I+ L E + F KTL GL + + + +++ L+ ++ FKL DT+G P++++++I Sbjct: 360 TKIKMILNKEVQLFEKTLQLGLNIFENSI----RNQELDKEITFKLVDTYGFPIELIKEI 415 Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 C + +D+ +F+ + + S+A +L + E + + Y++ Sbjct: 416 -CEQRNVKVDLEAFDAMFKHHQLISKANKANLKVMESQNESLM-----QLDVDSTFHYEI 469 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 R + I+ + E+V + + + VVFD T FYA Sbjct: 470 FRWEN---------------------AKIITLFNEDFELV-DGLDHEDGYVVFDNTCFYA 507 Query: 523 EAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 +GGQ DTG I + + + DV K VHH V+ L ++L I+ Q+R+ Sbjct: 508 TSGGQQHDTGYIIKNDQQFFVDDVFKAPNRQHVHH--VKNASLSMNEHVILQINEQDRKS 565 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 ++ NH+A HLLH+ L +L + Q G+ P + FD T+ T A+L +E+ +N++ Sbjct: 566 ITANHTAEHLLHYCLKHVLSPDIKQEGAAKYPHKVTFDFTYHAQPTKAQLDKLENVLNEM 625 Query: 643 IAQNLPVVTRIMNREDAIASGAAALLGTKYND---RVRVVSVEYEDGGVHSSALCGGTHV 699 + N V M+ ++A A GAAA Y ++RV+ + G S LCGGTH Sbjct: 626 VQSNFDVQELHMDLDEAKAVGAAAYFEDVYKKLKGKLRVIKM----GP--SIELCGGTHA 679 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITGQ-------------------RARSHLMGQDE 740 T EI + IV +S AG RI +TG + +L D Sbjct: 680 HHTSEIERIKIVECASKGAGSWRITMVTGHDNLAKYIHDLYVDYLNEINHLKVNLDINDH 739 Query: 741 KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADV------ 794 KL L + + + + + E++ +L+ K++ + ++ + I D+ Sbjct: 740 KLNDLYNAFANWKNLSIDDYDLLNEKFAELKQSLINFKIEFDKQN-AKQAIIDIKNTFNT 798 Query: 795 ---NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFN 851 N H+ D+K + + ++ L + Q + + + + K L+ + E N Sbjct: 799 QLTNKRVHVFKNTDNKNIFNALNELINENQDTLFISFNLD-DNKIQYLLAINEKFATT-N 856 Query: 852 AVDLARLSAKV--LGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 ++L + ++ + G GGG+P+ Q G K D+ + V ++ Sbjct: 857 QINLNKYIKELNTISNGKGGGKPYFVQGGTSEQEKLDELLTVVDKWV 903 >gi|71655886|ref|XP_816499.1| alanyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener] gi|70881631|gb|EAN94648.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi] Length = 959 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 270/780 (34%), Positives = 412/780 (52%), Gaps = 92/780 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59 V+ +R FL+FF++ GH+ +PSS ++P NDPTL+F N+GM FKN+F G P + Sbjct: 6 VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65 Query: 60 -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 Q C+RAGGKHNDLD+VGR HHTFFEMLG++SFG YFK AI+ AW+LLT+ + Sbjct: 66 TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125 Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T ++ DEEA +LW ++ + + +I DNFW M + GPCG Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSE+ FD+ GG + ++E IEIWNLVFMQFE+ LPKM +DTG Sbjct: 184 PCSEVHFDR----LGGRNAAELVNKEDPMVIEIWNLVFMQFERHEDGVLVPLPKMHVDTG 239 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDH 278 MGLER+ +++Q+ +NYD D + L +A + VTG + + + V +RVI DH Sbjct: 240 MGLERLTSIMQDVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADH 299 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 +R S +ADG +P + GRG+VLRRI+RRA+ Y + LG L+ A+ +G + Sbjct: 300 IRCLSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFF 359 Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 + + + I+ L E+ F KT D GL L+ ++ D ++GD AF L+D +G Sbjct: 360 THMQDPRTVQRIKTVLADEEASFAKTWDVGLKHLNKAVAD-AVDNTISGDNAFILHDRYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ +L + +D+ F+ A+ +A+ L G K + + + Sbjct: 419 FPVDLTC-LLAEKAGLRVDMNGFHAAM-------KANQLSAGRVAAAKTFLDVHQLEELK 470 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ--GEIVEEAVSGQKVE- 512 Q +K++ ++R ++ VKAI + G V+ + G++ E Sbjct: 471 QMGIAPTEDAAKYIWKNR---------------TAEVKAIFNKKTGTFVDMLMPGEEGEE 515 Query: 513 ---VVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERG---- 563 ++ D T FYAE+GGQ+ DTG A D + ++ V G VH + Sbjct: 516 DIGLIMDVTNFYAESGGQIYDTGRIVAAADAV-FEVKKVYNLG-GYVVHLGRMMTTNSTA 573 Query: 564 -ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPD 615 + S+ L +DY+ R ++ NHS TH+L+ L +L V Q GS +T + Sbjct: 574 VPIPVTSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPENYMEVQQKGSLVTEE 633 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYND 674 LRFD +++ ++ +L IE +N+ I Q L V + + E A G + G KY D Sbjct: 634 MLRFDFSYNSKVSQEDLVKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPD 693 Query: 675 RVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 V V+SV E + ++ CGGTH+S+ E + I+SE ++ G+RRI Sbjct: 694 PVSVISVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKEAEVAVILSEEALMKGVRRI 753 >gi|146086823|ref|XP_001465654.1| alanyl-tRNA synthetase [Leishmania infantum JPCM5] gi|134069753|emb|CAM68079.1| putative alanyl-tRNA synthetase [Leishmania infantum JPCM5] gi|322499108|emb|CBZ34180.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 962 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 296/966 (30%), Positives = 489/966 (50%), Gaps = 122/966 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 VS +R F+++F+K GH +PSS + P +DPTL+F N+GM FK +F G P Sbjct: 8 VSRVRQEFVDYFKKQGHTFVPSSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + Q C+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ + Sbjct: 68 KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + +LY+T ++ DE EA +LW + L +I+ DNFW M +TGPCG Sbjct: 128 KLPKDQLYVTYFEGDENNGLDPDLEAKELWGQF--LPESQIVPGNAKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSE+ FD+ GG +S ++ +EIWNLVFMQFE++ LP+ IDTG Sbjct: 186 PCSEVHFDR----IGGRNAASLVNKDDPMVVEIWNLVFMQFERRAGGSLTPLPQKHIDTG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDH 278 MGLER+ ++LQ +NYD D + L +A + TG + + +V +RV+ DH Sbjct: 242 MGLERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNDPDSDALVAYRVVADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 +R + + DG++P + GRG+VLRRI+RRA+ Y + LG L+ ++CT +G + Sbjct: 302 IRCLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFF 361 Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDT 393 P L + + + I+ L E++ F KT + GL + ++ ++++G AF L+D Sbjct: 362 PHLKEPRNIQRIKTVLADEEQSFAKTWEMGLKHFNHAVNECRANNSKVISGSEAFVLHDR 421 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKY 452 +G P+D+ +L + +D+ FN ++E + A G + T I + L+E Sbjct: 422 YGFPVDLTC-LLAEKDGMTVDLEGFNAEMKESKVSA-----GRVAATKTFIDAYQLEELK 475 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT---NGVSSIVKAIVQQGEIVEEAVSGQ 509 RG + K + + DL + +S ++++ G + + Sbjct: 476 ----------TRGIPQTDDAAKYVWEDSTGDLLAIFDKKNSKFISLLEPG----NDLGAE 521 Query: 510 KVEVVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVER---GI 564 V ++ T FYAE+GGQ+ DTG A D + ++ V A G VH + + Sbjct: 522 GVGIILSTTNFYAESGGQVYDTGRLVAASDSV-FEVKKVYNVA-GYVVHVGNLSKDSASS 579 Query: 565 LRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLR 618 + + + L +DY+ R ++ NH+ TH L+ L +LG + V Q GS +T + LR Sbjct: 580 IPSSAVVQLQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLR 639 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677 FD +++ +++ +L +E +N+ I LPV + E A +G + G KY D V Sbjct: 640 FDFSYNTKLSNEDLVRVERLLNEKIQAGLPVYREEVPLEAASKINGLRHMFGEKYPDPVS 699 Query: 678 VVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI--- 723 V+S+ E E+ ++ CGGTH+ + E I+SE ++ G+RR+ Sbjct: 700 VISIGTPINEMLANPEKEEWRDYAVEFCGGTHLKNLKEAEKAVIISEEALMKGVRRVVVA 759 Query: 724 ---EAITGQRARSHLMGQ-DEKLKSLASFLKVSQGNVVGR------VEEIWEEYRKLQLI 773 EA +A + L GQ DE +K A+ V +V+ + + + + + + Sbjct: 760 TKSEADKVIKAGAVLKGQYDELMKKEATATSVKALSVLNKKVGDSCIPLVLKNEMRDNID 819 Query: 774 HAKRKLQLNVEDLSC----------------HKIADVNFMSHIISE--VDSKELKSVMDA 815 A +++ ++ + + A F+ H ++E + + L++ D Sbjct: 820 AAIKRMNATLKSQAAEARDKAAEAGKALGASYDAAAAPFLVHQMTEFGAEREALQAFSDG 879 Query: 816 LQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHM 874 + + + L+G EK +++ + + + +AV A+ S G GGG+P+ Sbjct: 880 FTSTVSGPVGVFLIGSDDEKALAIVSMPAAFVERKMSAVAWAKSSI-----GKGGGKPNA 934 Query: 875 AQSGGP 880 AQSG P Sbjct: 935 AQSGLP 940 >gi|255727014|ref|XP_002548433.1| alanyl-tRNA synthetase [Candida tropicalis MYA-3404] gi|240134357|gb|EER33912.1| alanyl-tRNA synthetase [Candida tropicalis MYA-3404] Length = 700 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/680 (37%), Positives = 372/680 (54%), Gaps = 55/680 (8%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 + +R+TFL++F++N H +PSSS++P NDPTL+F N+GM +K IF G P T Sbjct: 27 AAKVRSTFLDYFKQNKHTYVPSSSVVPHNDPTLLFANAGMNQYKPIFLGTVDPASDFATL 86 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VGR + HHTFFEMLGN+SFG YFK+ AI +W+LLTK + Sbjct: 87 KRAANSQKCIRAGGKHNDLEDVGRDSYHHTFFEMLGNWSFGDYFKKEAIDFSWELLTKVY 146 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T + DE EA + W K+ G+ D I+ + DNFW M + GPCG Sbjct: 147 GLPEDRLYVTYFGGDEKQGLEPDLEAKEFWLKV-GVPEDHILPGSVKDNFWEMGDQGPCG 205 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI FD+ GG S + + IE+WN+VF+QF ++ LP IDTG Sbjct: 206 PCSEIHFDR----IGGRNASDLVNMDDPNVIEVWNVVFIQFNREADGNLRSLPNKHIDTG 261 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDH 278 MG ER+ ++LQ+K++NYD D+F + ++TG++ Y G + I +RVI DH Sbjct: 262 MGFERLVSILQDKSSNYDTDVFLPIFDKIREITGVRPYTGKFGSEDKDGIDTAYRVIADH 321 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F I DG +P NEGRGYVLRRI+RR Y R + Y L+ + + Sbjct: 322 VRTLTFAICDGGVPNNEGRGYVLRRILRRGSRYVRKYMNYPIGGFFQQLVDVVIEQNKEI 381 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLYDTH 394 +PE+ ++E L E+ F KTLDRG L + +++ ++ L+G ++LYDT+ Sbjct: 382 FPEIASGAQDLKEILNEEELSFAKTLDRGEKLFEQYAIIASKTPEQTLSGKDVWRLYDTY 441 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + GL ID F +A EE R ++ G+GT K G Sbjct: 442 GFPVDLTRLMAEEAGLK-IDEPGFERAKEESREASK------GNGT----------KDGK 484 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE-AVSGQKVEV 513 T + D+ S+ K D T V + V I + V+ S + + Sbjct: 485 T-LVKLDVHALSELDKNDAIPKTNDEFKYGTENVKATVVGIYDGSKFVDSIEDSSVQCGI 543 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 + D+TPFYAE GGQ DTG + DG +++VQ A G +H + G L ++ Sbjct: 544 LLDKTPFYAEQGGQEYDTGKIVIDGKSEFNVSNVQVYA-GYVLHTGNILEGKLSVGDEII 602 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 T D R + NH+ TH+L+ AL +LG V Q GS + P+ LRFD +H + ++ EL Sbjct: 603 ATYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAPEKLRFDFSHKQALSPKEL 662 Query: 633 KSIEDNVNDIIAQNLPVVTR 652 + +E N I N V + Sbjct: 663 EKVEAISNKYIKNNDKVFYK 682 >gi|315929558|gb|EFV08748.1| alanyl-tRNA synthetase [Campylobacter jejuni subsp. jejuni 305] Length = 715 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 274/762 (35%), Positives = 416/762 (54%), Gaps = 64/762 (8%) Query: 133 DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIPGGLPGSS 191 D+EAF LW+K + ++I + DNFW M +TGPCGPCSEIF+DQG E Sbjct: 2 DDEAFNLWQK--HIQKERIYKFGDKDNFWQMGDTGPCGPCSEIFYDQGQEHFNSSEDYMG 59 Query: 192 EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKH 251 +G+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + K +N+D LF Sbjct: 60 GDGDRFLEIWNLVFMQYERSADGVLSPLPKPSIDTGMGLERVTAIKEGKFSNFDSSLFMP 119 Query: 252 LIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311 +I ++ Y + + RVI DH+RSS FL+A G+ EGRGYVLRRI+RRA+ + Sbjct: 120 IINEISKLCNKTYVYESGASFRVIADHIRSSVFLLAQGVSFDKEGRGYVLRRILRRALRH 179 Query: 312 ARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDG 371 LLG+ + M L+ +C MG Y L + K I+E +R E+ERF T++ G+ + + Sbjct: 180 GYLLGFKQAFMYKLVDVVCDLMGGHYTYLNEKKDFIKEQIRLEEERFLSTIENGIEIFNE 239 Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431 L + EI +G+VAFKLYDT+G PLD+ D+L + L +D F + EQ++RA+A Sbjct: 240 ELKNT--KEIFSGEVAFKLYDTYGFPLDLTADMLREKNLK-VDEEKFELFMNEQKARAKA 296 Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491 G G T + +L EK+G F+GY+ K C+ + L + Sbjct: 297 SWKGSGDKTASGDFKNLLEKFGENHFVGYE------------KAECESKILALLDEDFKE 344 Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551 V + G V+ + TPFYA +GGQ D+G + ++ D QK Sbjct: 345 VSTLKDAG------------WVMLENTPFYATSGGQSADSGFI----AKREVLDTQK--- 385 Query: 552 GIF-VHHAIVERG-ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609 F ++ + ++ G L+ + ID + R Q++ +HSATHLLHHAL ILGSHVSQ G Sbjct: 386 -FFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSHVSQAG 444 Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG 669 S + + LRFD TH K + EL+SIE VN +I + + M E+A SGA AL Sbjct: 445 SLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKSGAIALFN 504 Query: 670 TKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729 KY VRV+++ S LCGGTHV +T +I YIV ES + AG+RRIEA+ + Sbjct: 505 EKYQGNVRVLTLG------ESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAVVSK 558 Query: 730 RARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQ-LIHAKRKLQLNVEDLSC 788 A + Q E+L + LK +++ ++++ E L+ + K +L+ +++ Sbjct: 559 AALEFVKNQLEELSKVKDELK--NNDILSGIKKLKNEILSLKNELKNSSKTELDSKNIQG 616 Query: 789 HKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848 +I + +D+ ++K+++D + K +I+L+ + EK I + + D Sbjct: 617 VEIC--------VKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEK-----ITLAAGVKD 663 Query: 849 -RFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 A L + +A++L GG GGGR A +GG + +K ++A+ Sbjct: 664 VPLKAGALVKEAAQIL-GGNGGGRDDFATAGGKDLSKINEAL 704 >gi|322504973|emb|CAM45216.2| putative alanyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 962 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 296/969 (30%), Positives = 486/969 (50%), Gaps = 128/969 (13%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 VS +R F+++F+K GH +P S + P +DPTL+F N+GM FK +F G P Sbjct: 8 VSRVRQKFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKTLFLGTADPNTDFGRL 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + V Q C+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ + Sbjct: 68 KRVANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + +LY+T + D D EA +LW + L +II DNFW M +TGPCG Sbjct: 128 KLPKDQLYVTYFEGDVKNGLDPDLEAKELWGQF--LPESQIIPGNAKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 PCSE+ FD+ G GL +++ +EIWNLVFMQFE++ LP+ +DTGMG Sbjct: 186 PCSEVHFDRIGGRNAAGL--VNKDDPMVVEIWNLVFMQFERRTDGLLTPLPQKHVDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280 LER+ ++LQ +NYD D++ + +A + TG + + + +V +RV+ DH+R Sbjct: 244 LERLTSILQGVKSNYDTDVWIPIFEAIQTATGYRKSYVEIRSEPDSDALVAYRVVADHIR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + DG++P + GRG+VLRRI+RRA+ Y + LG L+ ++C +G +P Sbjct: 304 CLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGADPGFFTQLVDSVCASLGPFFPH 363 Query: 340 LIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHG 395 L + + I+ L E++ F KT + GL + +++G AF L+D +G Sbjct: 364 LKDPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAAGECRANNSRVISGSEAFVLHDRYG 423 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ +L + +D+ FN + +A+ + G K + + Sbjct: 424 FPVDLTC-LLAEKDGMTVDLEGFNAEM-------KANQVSAGRVAAAKTFIDAYQLEDLK 475 Query: 456 QFIGYDLLRGSKFMKEDR--KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 + G+K+ ED +VL + + +S ++++ G + ++V + Sbjct: 476 KRAIPQTDDGAKYAWEDSTGEVLA------IFDKKNSRFISLLEPG----NDLGAEEVGI 525 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--KAEGIFVHHAIVER---GILRTE 568 + + T FYAE+GGQ+ DTG + R + +V+K G VH + + + Sbjct: 526 ILNATNFYAESGGQVYDTGRLV--AARDCVFEVKKVYNVGGYVVHVGKLSKDSASPIPLS 583 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVT 622 + + +DY+ R ++ NH+ TH L+ L +L + V Q GS +T + LRFD + Sbjct: 584 ALVQMQVDYERRLPIAANHTTTHQLNWTLRRVLEENPANFTEVQQKGSLVTDEMLRFDFS 643 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA------LLGTKYNDRV 676 H +++ +L +E +N+ I LPV RE+ + A+ + G KY D V Sbjct: 644 HHTKLSNEDLVRVEKLLNEKIQAGLPVY-----REEVPLAAASKINGLRQMFGEKYPDPV 698 Query: 677 RVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI-- 723 V+S+ E E+ ++ CGGTH+S+ E I+SE ++ G+RR+ Sbjct: 699 SVISIGAPINEMLANPEKEEWRDYAVEFCGGTHLSNLKEAEKAVIISEEALMKGVRRVVV 758 Query: 724 ----EAITGQRARSHLMGQ-DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR- 777 EA +A + L GQ DE +K A+ + +V+ + ++ + L L +A R Sbjct: 759 ATKAEADKAIKAGAELKGQYDELVKREATVGNIKALSVLNK--KVGDSCVPLVLKNAMRD 816 Query: 778 -------------KLQLNVEDL----------SCHKIADVNFMSHIISE--VDSKELKSV 812 KLQ+ + + A F H ++E + + L++ Sbjct: 817 NIDAAIKQMNASLKLQVAEAKEKAAEAGKALGASYDAAAAPFFVHQMTEFGAEREALQAF 876 Query: 813 MDALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D + + + L+G EK +++ + T + + +AV A+ S G GGG+ Sbjct: 877 SDGFSSTVSGPVGVFLIGSDDEKALAIVSMPTAFVEKKMSAVTWAKSSI-----GKGGGK 931 Query: 872 PHMAQSGGP 880 P+ AQSG P Sbjct: 932 PNAAQSGLP 940 >gi|291320346|ref|YP_003515608.1| alanyl tRNA synthetase [Mycoplasma agalactiae] gi|290752679|emb|CBH40652.1| Alanyl tRNA synthetase (Alanine tRNA ligase) (ALARS) [Mycoplasma agalactiae] Length = 880 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 298/915 (32%), Positives = 467/915 (51%), Gaps = 106/915 (11%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF+ H ++ S SLIP NDP+L++ NSG+ KN F+G++ P +T Sbjct: 7 TEIRQKWLDFFKSKDHLVIESKSLIPVNDPSLLWINSGVATLKNYFSGKKVPPAFRLTNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK +R ND++NVG T+RHHTFFEMLGNFS G YFK+ AI A + L ++D + Sbjct: 67 QKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAFAKEFLVNVLEMDLEK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY T Y+ED EA W + +G+ +I T + NFW + +GPCGPC+EIF+D+GE Sbjct: 123 LYFTYYEEDLEAKNYWLE-NGVDESHLISGTKDTNFWDLG-SGPCGPCTEIFYDRGEKYD 180 Query: 185 G---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 L + E +RYIEIWN+VF QF + L + +IDTG GLER+A+++Q+ Sbjct: 181 SRGLDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYIELKQKNIDTGAGLERLASIMQDVP 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY----------EGNNI-VNHRVIVDHLRSSSFLIADGI 290 NYD DLF ++I+ E+ + KY E N I N ++I DH+R+ IADG Sbjct: 241 TNYDSDLFINIIREIEKYSPYKYVIENYFVKDAEQNEINTNFKIIADHIRTVVNAIADGA 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +N GRGY++RR++RR+ LG + + L+ + + Y E K +IE+ Sbjct: 301 KISNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVHVVKASLPYEYDE----KDVIEQ- 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ F KT+++G VLL+ L K +I +G VAF L +T+G P+++ +IL +G+ Sbjct: 356 IKEEELLFSKTIEKGKVLLESFLD--SKSKIFDGAVAFNLLETYGFPIELTAEILHQKGI 413 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFM 469 + +D+ +F A E+ A A G SG + I +L +K F+GY L Sbjct: 414 S-VDMDAFELAKEKH---ALASKGGKASGMDKVINSLALIDK-KMDNFVGYSEL------ 462 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 N + ++K + ++ E+ G V+ + TPFYA +GGQ Sbjct: 463 ----------------NATTKVLKLLDEENEVEAFETGGY---VLLETTPFYATSGGQRH 503 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G I +++I DV K G +H G + S+ +D R L NHS Sbjct: 504 DKGFIIQGENKIKIVDVFKDKFGNHIHFV---EGKMNIHESVSCYVDPTIRIGLERNHSG 560 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL +LGSH+ Q GS + L FD + + ++K++ED V I++++ Sbjct: 561 THLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAVEDLVRSYISKSIDR 620 Query: 650 VTRIMNREDAIASGAAALL--GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 I + A GA L G + R +RVV G +S LCGGTH+S+T ++ Sbjct: 621 EYIITTVDKAKEMGAIMTLEEGEYMDPRAIRVVRF-----GDITSDLCGGTHLSNTSKLE 675 Query: 707 LLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQDEKLKS-LASFLK-------------- 750 I + +AG+ RI AI+ + +L ++KL LA+ +K Sbjct: 676 NFKITNVEKKQAGVFRIRAISSSKLVNEYLTDVNKKLNDELATIIKKIKELKSDYSAPVV 735 Query: 751 --------VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802 N++ +EE E Y+ QL+ ++ + E + KI D F +I Sbjct: 736 NENESDIETLNANIIKIIEECREAYK--QLLKDHSNVEFDYETVKFVKIND--FDVYINL 791 Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862 E D+ ++K + +++ K QSG + + S+ + +L + T +D ++ K+ Sbjct: 792 EADASDVKVIAASVRDKFQSGKTIAIVGSRNENELLLAIATR-------VIDANKMFKKI 844 Query: 863 LG--GGGGGGRPHMA 875 G GGG P +A Sbjct: 845 ASELDGRGGGAPILA 859 >gi|222612529|gb|EEE50661.1| hypothetical protein OsJ_30891 [Oryza sativa Japonica Group] Length = 901 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 275/734 (37%), Positives = 376/734 (51%), Gaps = 77/734 (10%) Query: 43 MVPFKNIFTGQEKP------VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNF 96 M FK +F G P + +A T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+ Sbjct: 1 MNQFKPVFLGTAAPDAPLGRLRRACNT-QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW 59 Query: 97 SFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSA 148 SFG YFKE AI AW+LLT+ + L R+Y T + DE E+ +W K L Sbjct: 60 SFGDYFKEEAIGFAWELLTQVYKLPTDRIYATYFGGDEKFGLAPDTESKNIWLKY--LPK 117 Query: 149 DKIIRITTNDNFWSMAETGPCGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQ 207 +K++ DNFW M +TGPCGPC+EI FD+ G L + + IEIWNLVF+Q Sbjct: 118 EKVLPFGCKDNFWEMGDTGPCGPCTEIHFDRVGNRDAASLVNNDD--PTCIEIWNLVFIQ 175 Query: 208 FEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKY 264 F ++ LP +DTGMG ER+ ++LQ K +NYD D+F + A Q+ G Y Sbjct: 176 FNREADCTLRPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAIHQLAGNGIQSY 235 Query: 265 EGN------NIVN--HRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLL 315 G + V+ +RV+ DH+R+ SF IADG P NEGR YVLRRI+RRA+ + + L Sbjct: 236 SGKVGPEDVDKVDMAYRVVADHIRTLSFAIADGSQPGNEGREYVLRRILRRAVHFGHQKL 295 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLL----DG 371 + L+ MG +PEL + I++ ++ E+E F TL +G D Sbjct: 296 KAKQGFFSSLVHVFVQLMGDVFPELKDNEKKIKDIIKDEEESFENTLAKGFEKFKKAADA 355 Query: 372 VLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA 431 V G D AF L+DT+G P+D+ + + GL+ +D F+ A+EE R +AR Sbjct: 356 VKESGGTD-------AFVLWDTYGYPVDLTEVMGVDYGLS-VDREGFDAAMEEARQKARN 407 Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491 G S+ AT LR D P + S+ Sbjct: 408 ARFKAGEN-------SIVLDANATA-----QLRNQGLASTD-----DSPKYGYKDN-DSV 449 Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAE 551 VKAI E V A + +V + T FYAE GGQ+ DTG G +T+VQ A Sbjct: 450 VKAIYTGSEYVSAASGDEDFGLVLESTSFYAEQGGQIYDTGKIEGSFGSFNVTNVQVFA- 508 Query: 552 GIFVHHAIVERG--ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNG 609 G +H +G L + +DY R ++ NH+ TH+L+ AL ILG HV Q G Sbjct: 509 GYVLHMGSFTKGSKALSVGDKVACKVDYARRALIAPNHTCTHMLNFALREILGDHVDQKG 568 Query: 610 SCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALL 668 S + P+ LRFD +H KP+ +L+ IE VN I L V R + DA +G A+ Sbjct: 569 SIVLPEKLRFDFSHGKPVQPEDLRKIESIVNQQIKDKLEVFAREIKLADAKRINGLRAVF 628 Query: 669 GTKYNDRVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 G Y D VRVVSV E ++ S+ LCGGTH+ +T E ++SE I Sbjct: 629 GEIYPDPVRVVSVGRKVEDLLANPESKEWLSISTELCGGTHIKNTSEAEAFALLSEEGIA 688 Query: 718 AGIRRIEAITGQRA 731 G+RRI A+T + A Sbjct: 689 KGVRRITAVTAKHA 702 >gi|322491846|emb|CBZ27119.1| putative alanyl-tRNA synthetase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 962 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 303/971 (31%), Positives = 491/971 (50%), Gaps = 116/971 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 VS +R F+++F+K GH +P S + P +DPTL+F N+GM FK +F G P Sbjct: 8 VSRVRQEFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + Q C+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ + Sbjct: 68 KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + +LY+T ++ D+ EA +LW + L +I+ DNFW M +TGPCG Sbjct: 128 KLPKDQLYVTYFEGDKNNGLNPDLEAKELWAQF--LPESQIVPGNAKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSE+ FD+ GG +S ++ +EIWNLVFMQFE++ LP+ IDTG Sbjct: 186 PCSEVHFDR----IGGRNAASFVNKDDPMVVEIWNLVFMQFERRADGFLTPLPQKHIDTG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDH 278 MGLER+ ++LQ +NYD D + L +A + TG + + +V +RV+ DH Sbjct: 242 MGLERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNNPDSDALVAYRVVADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 +R + + DG++P + GRG+VLRRI+RRA+ Y + LG L+ ++CT +G + Sbjct: 302 IRCLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFF 361 Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDT 393 P L + + + I+ L E++ F KT + GL + ++ ++++G AF L+D Sbjct: 362 PHLKEPRNIQRIKAVLADEEQSFAKTWEMGLRHFNHAVNECRANNSKVISGSEAFVLHDR 421 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYG 453 +G P+D+ +L + +D+ FN ++E + A G + T I E+ Sbjct: 422 YGFPVDLTC-LLAEKDGMTVDLEGFNAEMKESKVSA-----GRVAATKTFIDAYQLEELK 475 Query: 454 ATQFIGYDLLRGSKFMKEDRK--VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 D + +K++ ED VL + + +S ++++ G + + V Sbjct: 476 TRGIPQTDDV--AKYVWEDSTGDVLA------IFDKKNSKFISLLEPG----NDLGAEGV 523 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAI-GDGIRLQITDVQKKAEGIFVH-HAIVERGILRTEM 569 ++ + T FYAE+GGQ+ DTG + G ++ V A G VH ++ + + Sbjct: 524 GIILNTTNFYAESGGQVYDTGRLVAGSDSVFEVKKVYNVA-GYVVHVGSLSKDSASPIPL 582 Query: 570 SLV--LTIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDV 621 S V + +DY+ R ++ NH+ TH L+ L +LG + V Q GS +T + LRFD Sbjct: 583 SAVVQMQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFDF 642 Query: 622 THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVS 680 ++S +++ EL +E +N+ I LPV + E A +G + G KY D V V+S Sbjct: 643 SYSTKLSNEELVRVEQLLNEKIQAGLPVYREEVPLEAASKINGLRQMFGEKYPDPVSVIS 702 Query: 681 V-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI------ 723 + E E+ ++ CGGTH+ + E I+SE ++ G+RR+ Sbjct: 703 IGTPINEMLTNPEKEEWRDYAVEFCGGTHLKNLKEADKAVIISEEALMKGVRRVVVATKS 762 Query: 724 EAITGQRARSHLMGQ-DEKLKSLASFLKVSQGNVVGRVEE-------IWEEYR------- 768 EA +A + L GQ DE ++ A+ V +V+ + + E R Sbjct: 763 EADKVIKAGTELKGQYDELMQKEATATSVKALSVLNKKVGDSCIPLVLKNEMRDNIDAAI 822 Query: 769 -------KLQLIHAKRKLQLNVEDL-SCHKIADVNFMSHIISE--VDSKELKSVMDALQK 818 K Q A+ K + L + + A F+ H ++E + + L++ D Sbjct: 823 KRMNAILKSQAAEARDKAAEAGKALGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFSS 882 Query: 819 KIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQS 877 + + + L+G EK +++ + + + +AV A+ S G GGG+P AQS Sbjct: 883 TVSGPVGVFLIGSDDEKALAIVSMPAAFVEKKMSAVAWAKSSI-----GKGGGKPSAAQS 937 Query: 878 GGPNGNKADQA 888 G P + A A Sbjct: 938 GLPAKDVAAAA 948 >gi|116515185|ref|YP_802814.1| hypothetical protein BCc_254 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285419|sp|Q057H8|SYA_BUCCC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|116257039|gb|ABJ90721.1| alanyl-tRNA synthetase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 881 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 292/884 (33%), Positives = 471/884 (53%), Gaps = 59/884 (6%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR FL+FF++ H++ SSSLIP +D +L+FTN+GM FK I+ +K ++ T Q Sbjct: 6 IRAMFLQFFKEKNHKIFKSSSLIPKDDNSLLFTNAGMNQFKKIYLKNKKKNQLSIATSQY 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R GGKH+DL VG T HHT FEMLGNFSFG YFKE AI+ AW+ LT K +L +++ Sbjct: 66 CIRTGGKHDDLKKVGHTPYHHTLFEMLGNFSFGEYFKENAIKYAWEFLTHKKWLNLSKKK 125 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRI-------TTNDNFWSMAETGPCGPCSEIFF 177 ++IT Y D E K+W I + +I+I +DNFW M + GPCGP +EIF+ Sbjct: 126 IWITYYYNDNETKKIWLNIIKIKNTHLIKIYDKKNIKYNSDNFWKMGDLGPCGPSTEIFY 185 Query: 178 DQGECIPGGLP-GSSEEGERY-IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 Q + S +E E+Y +EIWNLVFM+F Q K++ LP SIDTGMGLER++ Sbjct: 186 YQKKNRKEKKSIKSYKELEKYCLEIWNLVFMEFNQITKKKIIKLPIPSIDTGMGLERISV 245 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 +LQ + + + F LI+A ++ +K + N V+ ++I DH+R+S+ LIA+ ILP NE Sbjct: 246 ILQNVKSIFHTNNFIQLIEAIKKKIKIKIKKKNNVSLKIISDHIRTSTCLIAENILPGNE 305 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSA-YPELIQAKL-LIEETLRS 353 GR YVLR+I+RRA+C+ +G +P L + M Y IQ K+ I++ L Sbjct: 306 GRNYVLRKIIRRALCHGYFIGLQKPFFYKLSELIIYNMKKMNYDFHIQEKIHKIKKILFY 365 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+++F L+ GL L ++ ++ K++I + F LYDT+GLP+ I Q C + Sbjct: 366 EEKQFYYILENGLQKLKKIIKNIKKNKICEQKI-FTLYDTYGLPIQITQK-FCKKKNISF 423 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDR 473 +I N ++ + + + + + + + K+K + F GY + Sbjct: 424 NINKLNLIIKNNKKKQKNKEKKKKNFS----FITFKKK---SIFDGYHIYEKK------- 469 Query: 474 KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGC 533 S I++ I + +++ + S + ++ D TPF++++ GQ+GD+G Sbjct: 470 ---------------SKIIQIIYKNKNVLKLSKSQLGI-IILDITPFFSKSSGQIGDSGK 513 Query: 534 AIGD-GIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + D GI I KK + +H ++ G + + + I+ + R+ + NHSATHL Sbjct: 514 ILNDKGIF--IVQKTKKFDNYILHIGYIKHGCINIKDIVHAKINKKKRKTIQSNHSATHL 571 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L+ AL I + Q GS I LRFD +K +T ++ +E+ +N I +N+P+ Sbjct: 572 LNAALCKIFSEKIIQKGSFINDKYLRFDFFCNKTLTEEKINYLENIINKKIQKNIPINFV 631 Query: 653 IMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVS 712 I + + A LL KY VR++ ++ S LC GTH +TG+I I++ Sbjct: 632 ITSFKKAKKKKIKFLLEKKYKKTVRIIYIK-----NFSIELCNGTHHDNTGKIGCFKIIA 686 Query: 713 ESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL-- 770 ++I I+RI AITG + +D+ K L + + N+ + I + +KL Sbjct: 687 YNNIGNEIKRITAITGMEVIQYFNDKDKINKKLENLFSTNIHNIYLIAKNIVNKNKKLLE 746 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHII---SEVDSKELKSVMDALQKKIQSGIIML 827 + I K K + + + K N II S ++ K L+ + D L++K++S I++L Sbjct: 747 ENIKLKNKNIIEISKILISKAYLSNKKFLIIEKTSYIEYKLLRKLSDILKEKLKSLIVIL 806 Query: 828 VGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 + KK + LI +T++L N ++ + V+ G GGG + Sbjct: 807 IN-DNNKKINFLISITKNLKHIINLNNIKNIIFSVIPGTGGGKK 849 >gi|316967113|gb|EFV51596.1| putative alanine--tRNA ligase [Trichinella spiralis] Length = 962 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 281/778 (36%), Positives = 413/778 (53%), Gaps = 76/778 (9%) Query: 5 SSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 ++IR TF+ +F +K H+ + SSS+IP DP+L+FTN+GM FK IF G P + Sbjct: 8 NAIRQTFINYFTEKRNHQYVHSSSVIPKGDPSLLFTNAGMNQFKPIFLGTADPNSQMASW 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + V QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK+ AW++LTKEF Sbjct: 68 KRVVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKKDICAWAWEVLTKEF 127 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + +LY+T + D E ++W + GL +++++ DNFW M + GPCG Sbjct: 128 KIPKEQLYVTYFGGSEKCRLQPDVECRQIWLDM-GLPSERVLPFGMKDNFWEMGDIGPCG 186 Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 PCSEI +D+ G L +++ +EIWNLVF+ + + LPK ID G+G Sbjct: 187 PCSEIHYDRIGNRNAANL--INKDDPDVLEIWNLVFITYNRDKDGSLHPLPKRHIDCGLG 244 Query: 230 LERMATVLQEKTNNYDIDLFKHL---IQASEQV------TGMKYEGNNIVNHRVIVDHLR 280 ER+ +V+Q K +NYD DLF + I + +V G + E + +RV+ DH+R Sbjct: 245 FERLVSVIQGKKSNYDTDLFVPIFNRIAETAKVRPYMGKVGEEDEQQIDMAYRVVADHIR 304 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALC---TEMGSA 336 + + ++DG P N GRGYVLRRI+RR + YA L +L+P + E G Sbjct: 305 TLTVALSDGGRPDNCGRGYVLRRILRRGVRYATEKLNAPSGFFANLVPVVVETLVEDGET 364 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGL 396 +PEL + + E + E+ F KTL RG +L + KD+++ G VA++LY ++G Sbjct: 365 FPELKEDPNSVMEIINEEESLFLKTLSRGSRVLRQEIEKASKDKLIPGVVAWRLYASYGF 424 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 P+D+ Q ++ +++ + EE R +A+ S S + + F++ Sbjct: 425 PVDLTQ-LMAEESGYKVNM----EEYEECRQQAQMSSSSKFSQLNDVVDFNINA------ 473 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLT-NG--------VSSIVKAIVQQGEIVEEAVS 507 + Y LL G + +D+ K LT NG V V A+ + GE V E S Sbjct: 474 -VNY-LLNGKVPLTDDKP----KYAYRLTENGDDDYEFDEVKCEVLALRKNGEFVSEVCS 527 Query: 508 GQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 G ++ D+T FYAE+GGQ+ D G GD ++ +VQ + G VH V I R Sbjct: 528 GDSCCLICDKTAFYAESGGQIYDEGSMEGDKSEFRVRNVQARG-GYIVHFGEVMGTITRG 586 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 L +D + R Q+ NH+ATHLL+ AL +LG V Q GS + D LRFD T P+ Sbjct: 587 S-KLFQNVDQKRRVQVMKNHTATHLLNFALREVLG-QVEQKGSLVLTDRLRFDFTCKAPL 644 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGT---KYNDRVRVVSV--- 681 T +L IE V +I+ ++ + + + +A A L T Y D VRVVSV Sbjct: 645 TVEQLMKIEQIVANIVNSDVEIYMQEVPL--GVAKTIAGLRSTADETYPDPVRVVSVGTP 702 Query: 682 -----EYEDG---GVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 + DG + S CGGTH+ TG + I SE ++ GIRRI A+T A Sbjct: 703 VDALLKDPDGPGAKLASVEFCGGTHLLRTGHLGDFVIASEEAVARGIRRIVALTCHEA 760 >gi|154337657|ref|XP_001565061.1| alanyl-tRNA synthetase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 962 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 295/969 (30%), Positives = 485/969 (50%), Gaps = 128/969 (13%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 VS +R F+++F+K GH +P S + P +DPTL+F N+GM FK +F G P Sbjct: 8 VSRVRQKFVDYFKKQGHTFVPGSPVCPHDDPTLLFINAGMNQFKTLFLGTADPNTDFGRL 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + V Q C+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ + Sbjct: 68 KRVANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + +LY+T + D D EA +LW + L +II DNFW M +TGPCG Sbjct: 128 KLPKDQLYVTYFEGDVKNGLDPDLEAKELWGQF--LPESQIIPGNAKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 PCSE+ FD+ G GL +++ +EIWNLVFMQFE++ LP+ +DTGMG Sbjct: 186 PCSEVHFDRIGGRNAAGL--VNKDDPMVVEIWNLVFMQFERRTDGLLTPLPQKHVDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280 LER+ ++LQ +NYD D++ + +A + TG + + + +V +RV+ DH+R Sbjct: 244 LERLTSILQGVKSNYDTDVWIPIFEAIQTATGYRKSYVEIRSEPDSDALVAYRVVADHIR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + DG++P + GRG+VLRRI+RRA+ Y + LG L+ ++C +G +P Sbjct: 304 CLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGADPGFFTQLVDSVCASLGPFFPH 363 Query: 340 LIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHG 395 L + + I+ L E++ F KT + GL + +++G AF L+D +G Sbjct: 364 LKDPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAAGECRANNSRVISGSEAFVLHDRYG 423 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ +L + +D+ FN + +A+ + G K + + Sbjct: 424 FPVDLTC-LLAEKDGMTVDLEGFNAEM-------KANQVSAGRVAAAKTFIDAYQLEDLK 475 Query: 456 QFIGYDLLRGSKFMKEDR--KVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEV 513 + G+K+ ED +VL + + +S ++++ G + ++V + Sbjct: 476 KRAIPQTDDGAKYAWEDSTGEVLA------IFDKKNSRFISLLEPG----NDLGAEEVGI 525 Query: 514 VFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK--KAEGIFVHHAIVER---GILRTE 568 + + T FYAE+GGQ+ DTG + R + +V+K G VH + + + Sbjct: 526 ILNATNFYAESGGQVYDTGRLV--AARDCVFEVKKVYNVGGYVVHVGKLSKDSASPIPLS 583 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVT 622 + + +DY+ R ++ NH+ TH L+ L +L + V Q GS + + LRFD + Sbjct: 584 ALVQMQVDYERRLPIAANHTTTHQLNWTLRRVLEENPANFTEVQQKGSLVMDEMLRFDFS 643 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAA------LLGTKYNDRV 676 H +++ +L +E +N+ I LPV RE+ + A+ + G KY D V Sbjct: 644 HHTKLSNEDLVRVEKLLNEKIQAGLPVY-----REEVPLAAASKINGLRQMFGEKYPDPV 698 Query: 677 RVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI-- 723 V+S+ E E+ ++ CGGTH+S+ E I+SE ++ G+RR+ Sbjct: 699 SVISIGAPINEMLANPEKEEWRDYAVEFCGGTHLSNLKEAEKAVIISEEALMKGVRRVVV 758 Query: 724 ----EAITGQRARSHLMGQ-DEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR- 777 EA +A + L GQ DE +K A+ + +V+ + ++ + L L +A R Sbjct: 759 ATKAEADKAIKAGAELKGQYDELVKREATVGNIKALSVLNK--KVGDSCVPLVLKNAMRD 816 Query: 778 -------------KLQLNVEDL----------SCHKIADVNFMSHIISE--VDSKELKSV 812 KLQ+ + + A F H ++E + + L++ Sbjct: 817 NIDAAIKQMNASLKLQVAEAKEKAAEAGKALGASYDAAAAPFFVHQMTEFGAEREALQAF 876 Query: 813 MDALQKKIQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 D + + + L+G EK +++ + T + + +AV A+ S G GGG+ Sbjct: 877 SDGFSSTVSGPVGVFLIGSDDEKALAIVSMPTAFVEKKMSAVTWAKSSI-----GKGGGK 931 Query: 872 PHMAQSGGP 880 P+ AQSG P Sbjct: 932 PNAAQSGLP 940 >gi|19074068|ref|NP_584674.1| ALANYL tRNA SYNTHETHASE [Encephalitozoon cuniculi GB-M1] gi|19068710|emb|CAD25178.1| ALANYL tRNA SYNTHETHASE [Encephalitozoon cuniculi GB-M1] Length = 864 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 278/803 (34%), Positives = 435/803 (54%), Gaps = 94/803 (11%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R +FL +F H+++ SSS++P D TL+FTNSGMV FK G++K + +A Sbjct: 2 MWTTEKLRQSFLNYFASKSHKIVNSSSVVPYEDDTLLFTNSGMVQFKKNLLGEKKDLRRA 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + VQ+C+RAGGKHNDLD+VG+ HHT+FEM+GN+SFG YFKE I AW+ L + L Sbjct: 62 CS-VQRCIRAGGKHNDLDDVGKDTYHHTYFEMMGNWSFGDYFKEEGIGFAWEFLVEVLKL 120 Query: 121 DQRRLYITVYDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 D RLY+T YDE D+E+ ++W+K L +II + DNFW M +TGPCGPC+EI +D+ Sbjct: 121 DTDRLYVTYYDELDKESGRIWRKY--LPPSRIIAASYKDNFWEMGDTGPCGPCTEIHYDR 178 Query: 180 GECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILP--KMSIDTGMGLERMA 234 G S +++ IEIWN+VF+++ N+ + P + IDTG+GLER+ Sbjct: 179 ----IGSRDASRLVNKDDPNVIEIWNIVFIEY---NRTTSGLAPLERKCIDTGIGLERLL 231 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKYEG---NNIVNHRVIVDHLRSSSFLIADGIL 291 ++L + +NY ID F +I+A E KY + V RV+ DH R+ + + D + Sbjct: 232 SILMDVKSNYLIDSFSTIIKAMESHCSFKYNDKAESTDVAFRVVADHCRTIAVCVYDKVD 291 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +N+G GYVLRRI+RRA+ YA +LG E ++ L+ +G +L E Sbjct: 292 FSNDGVGYVLRRILRRAVRYAHEVLGLKEGVLGELVVVAAHAIG--------IELESVEC 343 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + E+ F +TL +G+ + + K ++G+ F LYDT+G P+D+ + + R + Sbjct: 344 VNKEELLFMRTLKKGIERFNRLAESSNK---ISGEDLFLLYDTYGFPVDLTELMAVERNI 400 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMK 470 ID +F E R RA S +K T+ + D+ SKF Sbjct: 401 E-IDYTNF----ESCRQRAIEAS----------------KKSKGTK-LNIDIGMCSKF-- 436 Query: 471 EDRKVLCQKPPIDLT-----NGVSSIVKAIVQQGEIVEEAV---SGQKVEVVFDQTPFYA 522 PP D + NGVS++ V +++ E G ++ +VFD+T FYA Sbjct: 437 ---------PPTDDSFKYERNGVSAMFLFAVAGEDVITEPCKIPKGIELGIVFDKTCFYA 487 Query: 523 EAGGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 E GGQ+GDTG I GD +TD Q G VH ++ + + DY Sbjct: 488 ECGGQVGDTGKIIFRDDSGDTGVFNVTDTQAIL-GFVVHKGALDGSASHQALQMY---DY 543 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + RR++ NH+ THLL+ L T++ + Q GS + PD LRFD + +T+ EL+ +E Sbjct: 544 ELRRRIMRNHTGTHLLNFFLRTVIKTQ--QRGSLVDPDKLRFDF-EGRKLTNEELEDVER 600 Query: 638 NVNDIIAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGG 696 +ND I + V I++R A+ + + +Y + VR+++++ + G+ +CGG Sbjct: 601 KINDFIKKGAEVKAVILDRRQAMDNPNIVRMQNEEYPENVRIITMQSD--GLIIQEMCGG 658 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNV 756 THV++ +I IVSE+ + A RRI +TG++A H + + +L K+S GNV Sbjct: 659 THVTNVSDIGKFRIVSETGVSANTRRIVGVTGKKA--HELDAEAEL----CLSKLSMGNV 712 Query: 757 VGRVEEIWEEYR-KLQLIHAKRK 778 V + I YR K+++++ + + Sbjct: 713 VNVDKAIPLFYRQKIEVLNQRNR 735 >gi|17506981|ref|NP_491281.1| Alanyl tRNA Synthetase family member (ars-2) [Caenorhabditis elegans] gi|74955985|sp|O01541|SYAC_CAEEL RecName: Full=Alanyl-tRNA synthetase, cytoplasmic; AltName: Full=AlaRS A; AltName: Full=Alanine--tRNA ligase gi|1938531|gb|AAB52339.1| Alanyl trna synthetase protein 2 [Caenorhabditis elegans] Length = 968 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 316/1005 (31%), Positives = 492/1005 (48%), Gaps = 173/1005 (17%) Query: 4 VSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------ 56 S +R+TF+ FF +K H + SSS+IP +DPTL+F N+GM FK +F G P Sbjct: 6 ASEVRSTFINFFREKKEHTYVHSSSVIPHDDPTLLFANAGMNQFKPLFLGIADPNSDLAK 65 Query: 57 VYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTK 116 + +AV T QKC+RAGGKHNDLD+VG+ HHT+FEMLGN+SFG YFK+ I AW+LLT Sbjct: 66 LKRAVNT-QKCIRAGGKHNDLDDVGKDVYHHTYFEMLGNWSFGDYFKKEIITWAWELLTT 124 Query: 117 EFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGP 168 + + RLY++V+ DE EA +W+ + G+ ++I+ DNFW M + GP Sbjct: 125 VYGIPAERLYVSVFGGDEANGVPADSEARDIWRSV-GVPDERILNFGMKDNFWEMGDVGP 183 Query: 169 CGPCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 CGPCSEI +D+ G L + + +EIWNLVF+QF ++ LP ID G Sbjct: 184 CGPCSEIHYDRIGNRDASHLVNADD--PMVVEIWNLVFIQFNREEGGVLKPLPAKHIDCG 241 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDH 278 +GLER+ V+Q+KT+NYD D+F+ + +A + +G++ I + +RV+ DH Sbjct: 242 LGLERLIAVMQDKTSNYDTDIFQPIFEAIHKGSGVRAYTGFIGDEDKDGVDMAYRVVADH 301 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337 +R+ + ++DG P N GRGYVLRRI+RR + YA +P L+P + + +G + Sbjct: 302 VRTLTIALSDGGRPDNSGRGYVLRRILRRGVRYASEKLNAQPGFFASLVPVVISILGETF 361 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEI-LNGDVAFKLYDTHGL 396 PEL + + + + + E+++F KTL RG VL + L + + GDV+++LYDT+G Sbjct: 362 PELSRDPVTVMDIINDEEKQFLKTLSRGRVLFQRAVQSLPEGTMTFPGDVSWRLYDTYGF 421 Query: 397 PLDIMQDILCARGLAGIDIISFNQALEEQRSRA-RAHSLGLGSGTTEKIWFSLKEKYGAT 455 P D+ Q + +GL+ +D N A EE R +A S G G K+ T Sbjct: 422 PADLTQLMAEEKGLS-VD----NTAFEEARRKAIETSSAGTG-------------KFRDT 463 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLT---NGVSSIVK---------AIVQQGEIVE 503 + D+ ++ ++ P T G ++ K AI + G+ V+ Sbjct: 464 --LDLDVHALAELQQKGVPTTDDSPKYAYTFTGEGSDAVYKFEPCVGKILAIRRDGKFVD 521 Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563 + +G++ ++ D+T FYAE GGQ+ D G +T V ++ V + V G Sbjct: 522 QLAAGEEGAILLDRTNFYAEQGGQIYDVGV---------LTKVNDESNEFNVSNCQVRGG 572 Query: 564 IL----RTEMSLVLTIDY-----QNRRQLSI-NHSATHLLHHALSTILGSHVSQNGSCIT 613 + E S + ++R+QL + NH+ TH+L++AL +L Q GS + Sbjct: 573 YIVLVGSAEGSFSVGDQVNERFDEDRKQLIMKNHTGTHVLNYALRKVLADS-DQKGSLVA 631 Query: 614 PDGLRFDVTHSKPITSAELKSIE-------DNVNDIIAQNLPVVTRIMNREDAIASGAAA 666 PD +RFD T+ +T ++K E D + A+N P+ E G A Sbjct: 632 PDRMRFDFTNKAGMTVQQVKKAEEYAQQLIDTKGQVYAKNSPL------GEAKKVKGLRA 685 Query: 667 LLGTKYNDRVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 + Y D VRVV+V + E+G + CGGTH+ + I + I SE + Sbjct: 686 MFDETYPDPVRVVAVGTPVEQLLQNPDAEEGQNTTVEFCGGTHLQNVSHIGRIVIASEEA 745 Query: 716 IRAGIRRIEAITGQRAR-----------------SHLMGQDEKLKSLASFLKVSQGNVVG 758 I GIRRI A+TG A H +DE L + F + + Sbjct: 746 IAKGIRRIVALTGPEAERAIARADRLTARLEEESKHADKKDELLANKDKFKALQK----- 800 Query: 759 RVEEIWEE--------YRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELK 810 +++EI +E +RK + + +Q ++ + + A V ++ E +KEL Sbjct: 801 KIQEIVDEANGAQLPYWRKDSIREKAKAIQKTLDGYTKAQQAAV--AEKVLGE--AKELA 856 Query: 811 SVMD------------ALQKKIQSGIIMLVGISKEKKASVLIVVTED------------- 845 +V + A K I + + +L K+ KA + V ED Sbjct: 857 AVAEQPTVLVHVFAANANSKAIDNALKLL----KDTKAVMAFSVNEDSGKVLCLAKVDKS 912 Query: 846 -LLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAI 889 + + A + VL GG GGG+ AQ G N +K D A+ Sbjct: 913 LVSNGLKANEWVNEVCTVL-GGKGGGKDANAQLTGENVDKLDAAV 956 >gi|321260042|ref|XP_003194741.1| alanine-tRNA ligase [Cryptococcus gattii WM276] gi|317461213|gb|ADV22954.1| Alanine-tRNA ligase, putative [Cryptococcus gattii WM276] Length = 1012 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/776 (35%), Positives = 404/776 (52%), Gaps = 72/776 (9%) Query: 4 VSSIRTTFLEFFQKNG---HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 + +R TF+++F H PSS +IP +D TL+F N+GM +K +F G P + Sbjct: 62 AAKVRQTFIDYFVNQPGFEHTFWPSSGVIPFDDDTLLFANAGMNQYKPLFLGTADPKSEL 121 Query: 61 VTTV-----QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT 115 + QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK A+ +AWDLLT Sbjct: 122 SKLIRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKLGALTMAWDLLT 181 Query: 116 KEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + L + RLY+T + + D EA ++W+ + G+ I+ DNFW M TG Sbjct: 182 RVYGLPKDRLYVTYFEGDAKQGLEPDSEAQQIWRDL-GVPESHILPGNAKDNFWEMGATG 240 Query: 168 PCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSI 224 PCGPCSEI FD+ GG + + + +EIWN VF+Q+ ++ E LP + Sbjct: 241 PCGPCSEIHFDR----IGGREAAHLVNADDPNVLEIWNNVFIQYNREPSGELRTLPAKHV 296 Query: 225 DTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVI 275 DTGMG ER+ +VL ++NYD D+F + +++TG + YEG + I +RVI Sbjct: 297 DTGMGFERLVSVLHNVSSNYDTDVFTPIFSKIQELTGARPYEGKLGDEDKDGIDTAYRVI 356 Query: 276 VDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA--RLLGYTEPLMMHLLPALCTEM 333 DH+R+ + I+DG +P +GRGYVLRR++RR + YA + L+P + + Sbjct: 357 ADHIRTLTIAISDGGIPDKDGRGYVLRRVLRRGVRYASNKFGVKIGTFFSSLVPTVVESL 416 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD--GVLSHLGKDEILNGDVAFKLY 391 G +PE+ + + E L E+ F +TL RG L + + K +L+G ++LY Sbjct: 417 GPIFPEVTKKIPELIEILNEEEASFARTLTRGEALFNKYATTAIAEKRTVLSGKDIWRLY 476 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 DT+G P+D+ Q + RGL ID +F +A E ++A KEK Sbjct: 477 DTYGFPVDLTQIMAEERGLK-IDQEAFEKARLESLEASKAGG---------------KEK 520 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV---EEAVSG 508 GA + D+ + D + + + VK+I + + E Sbjct: 521 AGAQ--VKLDVHDLAALEANDAVPKTDDSFKYNLDDIKASVKSIYHNSKFLNSTSELPPN 578 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGC-AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT 567 ++ D+T FYAE+GGQ DTG AI D ++ DVQ G +H +E G + Sbjct: 579 TTFGILLDRTNFYAESGGQEYDTGVIAIDDKAEFKVEDVQ-VYNGYVLHIGRMEEGEIEV 637 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 ++ T D R + NH+ TH+L+ AL +LG H+ Q GS + P LRFD +H K I Sbjct: 638 GDEVICTYDELRRWPIRNNHTGTHILNFALREVLGDHIDQKGSLVAPTKLRFDFSHGKSI 697 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEY--- 683 EL IE ND I + +PV + M +A G A+ G Y D VRVV + Y Sbjct: 698 AVPELIKIEAICNDWIKKGVPVYAKDMPLAEAYKIPGLRAVFGEAYPDPVRVVCLGYPLE 757 Query: 684 ------EDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 ED +++ CGGTHV+ T +I I+ ESSI GIRRI A+TG A Sbjct: 758 EISKNVEDARWRQTSIEFCGGTHVAKTDDIKDFVIIEESSIAKGIRRIVAVTGHDA 813 >gi|71416315|ref|XP_810193.1| alanyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener] gi|70874690|gb|EAN88342.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi] Length = 959 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 270/780 (34%), Positives = 410/780 (52%), Gaps = 92/780 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59 V+ +R FL+FF++ GH+ +PSS ++P NDPTL+F N+GM FKN+F G P + Sbjct: 6 VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65 Query: 60 -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 Q C+RAGGKHNDLD+VGR HHTFFEMLG++SFG YFK AI+ AW+LLT+ + Sbjct: 66 TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125 Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T ++ DEEA +LW ++ + + +I DNFW M + GPCG Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSE+ FD+ GG + ++E IEIWNLVFMQFE+ LPKM +DTG Sbjct: 184 PCSEVHFDR----LGGRNAAELVNKEDPMVIEIWNLVFMQFERHEGGVLVPLPKMHVDTG 239 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDH 278 MGLER+ +++Q +NYD D + L +A + VTG + + + V +RVI DH Sbjct: 240 MGLERLTSIMQGVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADH 299 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 +R S +ADG +P + GRG+VLRRI+RRA+ Y + LG L+ A+ +G + Sbjct: 300 IRCLSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFF 359 Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 + + + I+ L E+ F KT D GL + ++ D ++GD AF L+D +G Sbjct: 360 THMQDPRTVQRIKTVLADEEASFAKTWDVGLKHFNKAVAD-AVDNTISGDNAFILHDRYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ + GL +D+ F+ A+ +A+ L G K + + + Sbjct: 419 FPVDLTCLLAENAGLR-VDMNGFHAAM-------KANQLSAGRVAAAKTFLDVHQLEELK 470 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ--GEIVEEAVSGQKVE- 512 Q +K++ ++R ++ VKAI + G V+ + G++ E Sbjct: 471 QMGIAPTEDAAKYIWKNR---------------TAEVKAIFNKKTGTFVDMLMPGEEGEE 515 Query: 513 ---VVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERG---- 563 ++ D T FYAE+GGQ+ DTG A D + ++ V G VH + Sbjct: 516 DIGLIMDVTNFYAESGGQIYDTGRIVAAADAV-FEVRKVYNLG-GYVVHLGRMMTTNSTA 573 Query: 564 -ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPD 615 + S+ L +DY+ R ++ NHS TH+L+ L +L V Q GS +T + Sbjct: 574 VPIPVTSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPENYMEVQQKGSLVTEE 633 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYND 674 LRFD +++ ++ +L IE +N+ I Q L V + + E A G + G KY D Sbjct: 634 MLRFDFSYNSKVSQEDLVKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPD 693 Query: 675 RVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 V V+SV E + ++ CGGTH+S+ E + I+SE ++ G+RRI Sbjct: 694 PVSVISVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKESEVAVILSEEALMKGVRRI 753 >gi|322829672|gb|EFZ32980.1| alanyl-tRNA synthetase, putative [Trypanosoma cruzi] Length = 959 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 268/780 (34%), Positives = 409/780 (52%), Gaps = 92/780 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ---- 59 V+ +R FL+FF++ GH+ +PSS ++P NDPTL+F N+GM FKN+F G P + Sbjct: 6 VNRVRQEFLKFFEQRGHKFVPSSPVVPNNDPTLLFINAGMNQFKNLFLGTADPNTEFGRL 65 Query: 60 -AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 Q C+RAGGKHNDLD+VGR HHTFFEMLG++SFG YFK AI+ AW+LLT+ + Sbjct: 66 TRAANSQLCIRAGGKHNDLDDVGRDTYHHTFFEMLGSWSFGDYFKRDAIRWAWELLTEVY 125 Query: 119 DLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + RLY+T ++ DEEA +LW ++ + + +I DNFW M + GPCG Sbjct: 126 KLPKDRLYVTYFEGDPENGIAADEEAKQLWLEL--VKPEHVISGNAKDNFWEMGDIGPCG 183 Query: 171 PCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSE+ FD+ GG + ++E IEIWNLVFMQFE+ LPKM +DTG Sbjct: 184 PCSEVHFDR----LGGRNAAELVNKEDPMVIEIWNLVFMQFERHEGGVLVPLPKMHVDTG 239 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---------KYEGNNIVNHRVIVDH 278 MGLER+ +++Q +NYD D + L +A + VTG + + + V +RVI DH Sbjct: 240 MGLERLTSIMQGVHSNYDTDAWTPLFEAIQAVTGYEKSYAEIRDQNDSDATVAYRVIADH 299 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 +R S +ADG +P + GRG+VLRRI+RRA+ Y + LG L+ A+ +G + Sbjct: 300 IRCLSVSLADGAMPDSVGRGFVLRRIIRRAVRYGLQFLGAKVGFFSELVDAVVASLGPFF 359 Query: 338 PELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 + + + I+ L E+ F KT D GL + ++ D ++GD AF L+D +G Sbjct: 360 THMQDPRTVQRIKTVLADEEASFSKTWDVGLKHFNKAVAD-AVDNTISGDNAFILHDRYG 418 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 P+D+ +L + +D+ F+ + +A+ L G K + + + Sbjct: 419 FPVDLTC-LLAEKAGLRVDMNGFHATM-------KANQLSAGRVAAAKTFLDVHQLEELK 470 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ--GEIVEEAVSGQKVE- 512 Q +K++ ++R ++ VKAI + G V+ + G++ E Sbjct: 471 QMGIAPTEDAAKYIWKNR---------------TAEVKAIFNKKTGTFVDMLMPGEEGEE 515 Query: 513 ---VVFDQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIFVHHAIVERG---- 563 ++ D T FYAE+GGQ+ DTG A D + ++ V G VH + Sbjct: 516 DIGLIMDVTNFYAESGGQIYDTGRIVAAADAV-FEVKKVYNLG-GYVVHLGRMMTTNSTA 573 Query: 564 -ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-------HVSQNGSCITPD 615 + S+ L +DY+ R ++ NHS TH+L+ L +L V Q GS +T + Sbjct: 574 VPIPVTSSVDLQVDYKRRIAIAANHSMTHVLNWCLRRVLEDEAPESYMEVQQKGSLVTEE 633 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAI-ASGAAALLGTKYND 674 LRFD +++ ++ +L IE +N+ I Q L V + + E A G + G KY D Sbjct: 634 MLRFDFSYNSRVSQEDLAKIEKALNEKIQQGLVVYRKEVELEKAKHIVGLRQMFGEKYPD 693 Query: 675 RVRVVSV-----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI 723 V V+SV E + ++ CGGTH+S+ E + I+SE ++ G+RRI Sbjct: 694 PVSVISVGVPVDDLLAKPESAEWRAYAVEFCGGTHLSNIKEAEVAVILSEEALMKGVRRI 753 >gi|197294554|ref|YP_001799095.1| alanyl-tRNA synthetase [Candidatus Phytoplasma australiense] gi|171853881|emb|CAM11843.1| Alanyl-tRNA synthetase [Candidatus Phytoplasma australiense] Length = 863 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 253/745 (33%), Positives = 392/745 (52%), Gaps = 76/745 (10%) Query: 6 SIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQ 65 +IR +L+FF GH + S SLIP DPTL++ N+G+ P K F G + P+ + + VQ Sbjct: 5 AIRKMWLDFFSSKGHHIEKSFSLIPHQDPTLLWVNAGVTPLKKYFDGSQTPLCKKIVNVQ 64 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQR 123 KC+R ND++NVG T RHHTFFEMLGNFS G YFK+ AI A++LLT K F Sbjct: 65 KCIRT----NDIENVGETARHHTFFEMLGNFSIGDYFKKEAIHYAYELLTSSKWFSFPLD 120 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 +LYIT Y D++ +K W ++ G+ D++I + + NFW + GP GPC+EIFFD+GE Sbjct: 121 KLYITYYPTDKDTYKYWLEL-GIRKDRLIPLKS--NFWQIG-PGPSGPCTEIFFDRGEKY 176 Query: 184 P---GGLPGSSEEGERYIEIWNLVFMQFEQQNK---QERFILPKMSIDTGMGLERMATVL 237 L E R+IEIWN+VF Q+ K ++ LP +IDTG GLER+A +L Sbjct: 177 DKRNKELIIEDLENNRFIEIWNIVFSQYNCDPKLSIEQYQELPNKNIDTGAGLERLAAIL 236 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGR 297 QE NN++ DLF LI++ +++ + Y + ++I DHL++ F I DG NE R Sbjct: 237 QEADNNFETDLFFPLIKSIAKLSQIPYHQSPKA-FKIIADHLKTLVFAINDGATLTNEKR 295 Query: 298 GYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDER 357 GYVL++++RR+ + L + +P + +L+ M YPEL + K I++ L ++ Sbjct: 296 GYVLKKLLRRSFIQGKKLNFNQPFLHNLVDPTINMMQDFYPELTKNKNYIKDILLKQEHV 355 Query: 358 FGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIIS 417 F +TL + + K + L+G FKLYDT+G+P D++ D ++ +D Sbjct: 356 FLETLKTA----EAKFLYYAKKKSLSGINFFKLYDTYGIPEDVIIDYAKINNVS-VDYKG 410 Query: 418 FNQALEEQRSRARAHSLGLGS-GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 F LE+ R ++ + + + E+ + + +EK ++F+GY+ Sbjct: 411 FKFLLEKHRQISQKNHIFISKMNQQEEKFLNFREK---SEFLGYNNF------------- 454 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG 536 + + V + +G +V QTPFYA GGQ+ D G G Sbjct: 455 ----------ALKTKVIKVFDKG-------------IVLAQTPFYAPMGGQIADEGFIDG 491 Query: 537 DGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHA 596 ++ ++ K G +H G + ID + R Q+S +H+ATHLL Sbjct: 492 KKVK----NITKLPNGQHLHQI---EGSFYEGQEVFAQIDKKVRDQISYHHTATHLLETV 544 Query: 597 LSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNR 656 L LGSH+ + GS + + LR+D H + +T +L IE +N +I +NL V + + Sbjct: 545 LQNELGSHLEKQGSSVGYNSLRYDFNHFEKLTPEKLIKIEKEINGLIKKNLSVEIQKIPT 604 Query: 657 EDAIASGAAAL---LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSE 713 ++A + + L KY D VR+V + G S LCGGTH S T + I+S Sbjct: 605 QEAKENYSDILSKNPKAKYKDEVRIVRI----GNDFSIDLCGGTHASETKNLEKFVILSY 660 Query: 714 SSIRAGIRRIEAITGQRARSHLMGQ 738 +I +GI RIEA+ G ++ L+ + Sbjct: 661 ETISSGIYRIEAVCGNNIKTALVDK 685 >gi|1321619|gb|AAA99922.1| alanyl-tRNA synthetase [Vibrio cholerae] Length = 409 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 207/397 (52%), Positives = 269/397 (67%), Gaps = 13/397 (3%) Query: 43 MVPFKNIFTGQEKPVYQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYF 102 M FK+ F G EK Y TT Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YF Sbjct: 1 MNQFKDCFLGLEKRAYTRATTAQRCVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYF 60 Query: 103 KERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRIT------- 155 KE AIQ AW+ LT L + RL +TVY+ D+EAF +W K G+ AD+IIRI Sbjct: 61 KEDAIQYAWEFLTDVLQLPKERLLVTVYETDDEAFDIWNKKVGIPADRIIRIGDKKGGKK 120 Query: 156 -TNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNK 213 +DNFW M +TGPCGPC+EIF+D G+ I GG PGS EE G+R+IEIWN VFMQF + Sbjct: 121 FDSDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRFIEIWNNVFMQFNRHAD 180 Query: 214 QERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHR 273 LPK S+DTGMG+ER++ ++Q +NY+ID+F+ LI+A+ G + N + R Sbjct: 181 GTMEPLPKPSVDTGMGIERISAIMQGVHSNYEIDVFQTLIKAAADAIGYQDLTNQSL--R 238 Query: 274 VIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEM 333 V+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ + LG L+ L M Sbjct: 239 VVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEVM 298 Query: 334 GSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDT 393 G+A EL + + L+E+ LR E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYDT Sbjct: 299 GTAGVELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYDT 357 Query: 394 HGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430 +G P D+ D+ RG + ID F QA+EEQR RAR Sbjct: 358 YGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRAR 393 >gi|152002558|dbj|BAF73582.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-W] Length = 864 Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust. Identities = 296/931 (31%), Positives = 453/931 (48%), Gaps = 114/931 (12%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +L+FF H + SSSLIP N+ L++ N+G+ P K F G +KP ++ +T VQK Sbjct: 6 IRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQKPPFRRITNVQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R ND+ NVG+T+RHHTFFEMLGNFS G YFK+ AI A++LLT K F + Sbjct: 66 CIRT----NDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFAFPLEK 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LYIT + +D++ ++ W L +K I +NFW + GP GPC+EIFFD+G+ Sbjct: 122 LYITYFFQDQDTYQYW---LDLGVEKNHLIPLKNNFWQIG-PGPSGPCTEIFFDRGKTFD 177 Query: 185 G---GLPGSSEEGERYIEIWNLVFMQFEQQNKQ--ERFI-LPKMSIDTGMGLERMATVLQ 238 L E +R+IEIWN+VF Q+ K E++ LP +IDTG GLER+A +LQ Sbjct: 178 SRNKELIIQDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERLACILQ 237 Query: 239 EKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANEGRG 298 N++ DLF LI+A E++T +KY G N ++I DHL++ F I DG + NE RG Sbjct: 238 NTKTNFETDLFFPLIKALEKMTQIKYTGQE--NFKIIADHLKTLVFAINDGAVLTNEKRG 295 Query: 299 YVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERF 358 YVL++++RRA + LG +P + L+P M Y EL + +I + L ++ F Sbjct: 296 YVLKKLLRRAANEGKKLGLDKPFLHQLVPPTVAMMKDFYKELCTNQEMIAKVLLQQENIF 355 Query: 359 GKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISF 418 +TL L HL ++ L+G FKLYDT+G+P D++ D + + D F Sbjct: 356 EQTLKTA---EKTFLQHLTQN-TLSGKNFFKLYDTYGIPEDLILDYAKKKNIT-TDYQKF 410 Query: 419 NQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQ 478 + L + ++ ++ + ++ F + ++FIGY C+ Sbjct: 411 QELLHDHQNLSKQNQTSQTHMNKQEEAFL--QFLTPSEFIGY------------TNFTCK 456 Query: 479 KPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDG 538 + ++K + +G +V ++TPFYA GGQ+ D G D Sbjct: 457 ----------TKVIK-VFDKG-------------IVLEKTPFYANMGGQIEDEGWI--DN 490 Query: 539 IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALS 598 + +T + K G +H +G + ID R Q+S +H+ATHLL L Sbjct: 491 TK--VTKITKLPNGQILHEV---QGKFCEGQEVYACIDKTKRNQISYHHTATHLLEAVLQ 545 Query: 599 TILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNRED 658 LGSH+ + GS + LR+D H + IT L IE VN +I +++PV ++ D Sbjct: 546 KQLGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVKIEQLSISD 605 Query: 659 AIASGAAAL---LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESS 715 A A L KY D+VR+VS++ S LCGGTH ++T ++ I+S S Sbjct: 606 AQKKYATLLEKNQKAKYKDKVRIVSID-----TFSVDLCGGTHATNTKDLEHFTILSCES 660 Query: 716 IRAGIRRIEAITGQRARSHLMGQ-----------DEKLKSL---------ASFLKVSQG- 754 I +GI RIEA+ + L + +K KSL SF ++Q Sbjct: 661 ISSGIYRIEAVCNNNCQESLNAKLFPYQNDLHQLTQKAKSLQTQNLIFDVKSFPPITQSY 720 Query: 755 -NVVGRVEEIWEEYRKLQLI-------HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDS 806 +++ + I + + L L H K+ +Q L + M I E Sbjct: 721 QDILNYQKHIKAQQQALVLFEKKVLEYHQKKMVQAESNFLPPQITKKM--MLTIEEEKHL 778 Query: 807 KELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGG 866 + LK M+ + K ++ L + EK ++ + L N + A L G Sbjct: 779 EVLKFFMNHIFDKYHLEVLFLSYVQPEK---IVFLCKSKTLHAGNLIK----EAVSLVCG 831 Query: 867 GGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 GGG +AQ G +Q + V + L+ Sbjct: 832 SGGGNASLAQGGTKKTKNLEQVLNFVKTKLE 862 >gi|157869507|ref|XP_001683305.1| alanyl-tRNA synthetase [Leishmania major strain Friedlin] gi|68224189|emb|CAJ04856.1| putative alanyl-tRNA synthetase [Leishmania major strain Friedlin] Length = 962 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 286/962 (29%), Positives = 482/962 (50%), Gaps = 114/962 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VY 58 VS +R F+++F+K GH +PSS + P +DPTL+F N+GM FK +F G P Sbjct: 8 VSRVRQEFVDYFKKQGHTFVPSSPVCPHDDPTLLFINAGMNQFKALFLGTADPNTDFGRL 67 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + Q C+RAGGKHNDL++VGR HHTFFEMLG++SFG YFK+ AIQ AW+LLT+ + Sbjct: 68 KRAANSQMCIRAGGKHNDLEDVGRDTYHHTFFEMLGSWSFGDYFKKEAIQWAWELLTEVY 127 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 L + +LY+T ++ DE EA +LW ++ L +I+ DNFW M +TGPCG Sbjct: 128 KLPKDQLYVTYFEGDESNGLDPDLEAKELWGQL--LPESQIVPGNAKDNFWEMGDTGPCG 185 Query: 171 PCSEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 PCSE+ FD+ G L +++ +EIWNLVFMQFE++ LP+ IDTGMG Sbjct: 186 PCSEVHFDRIGRRNAASL--VNKDDPMVVEIWNLVFMQFERRAGGFLTPLPQKHIDTGMG 243 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280 LER+ ++LQ +NYD D + L +A + TG + + +V +RV+ DH+R Sbjct: 244 LERLTSILQGVKSNYDTDAWIPLFEAIQTATGYPKSYAEIRNDPDSDALVAYRVVADHIR 303 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPE 339 + + DG++P + GRG+VLRRI+RRA+ Y + LG L+ ++CT +G +P Sbjct: 304 CLTSAVGDGVMPDSVGRGFVLRRIIRRAVRYGVQFLGAKPGFFTQLVDSVCTSLGPFFPH 363 Query: 340 LIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL--GKDEILNGDVAFKLYDTHG 395 L + + + I+ L E++ F KT + GL + ++ ++++G AF L+D +G Sbjct: 364 LKEPRNIQRIKAVLADEEQSFAKTWEMGLKHFNHAVNECRANSSKVISGSEAFVLHDRYG 423 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEEQR---SRARAHSLGLGSGTTEKIWF-SLKEK 451 P+D+ +L + +D+ FN ++E + R A + + E++ + + Sbjct: 424 FPVDLTC-LLAEKDGMTVDLEGFNTEMKESKVSAGRVAATKTFIDAYQLEELKTRGIPQT 482 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 A +++ D G D+K +S ++++ G + + V Sbjct: 483 NDAAKYVWEDYT-GDVLAIFDKK--------------NSKFISLLEPG----NDLGAEGV 523 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVER---GILRTE 568 ++ T FYAE+GGQ+ DTG + + G VH + + + + Sbjct: 524 GIILSTTNFYAESGGQVYDTGRLVAASDSVFEVKKAYNVAGYVVHVGNLSKYSASPIPSS 583 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILG------SHVSQNGSCITPDGLRFDVT 622 + L +DY+ R ++ NH+ TH L+ L +LG + V Q GS +T + LRFD + Sbjct: 584 AVVQLQVDYERRLPIAANHTTTHQLNWVLRRVLGEKPDNFTEVQQKGSLVTDEMLRFDFS 643 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV 681 ++ +++ +L +E +N+ I L V + E A +G + G KY D V V+S+ Sbjct: 644 YNTKLSNEDLVRVEQLLNEKIQAGLLVYREEVPLEAASKINGLRQMFGEKYPDPVSVISI 703 Query: 682 -----------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRI------E 724 E E+ ++ CGGTH+ + E I+SE ++ G+RR+ E Sbjct: 704 GTPINEMLANPEKEEWRDYAVEFCGGTHLKNLKEAEKAVIISEEALMKGVRRVVVATRLE 763 Query: 725 AITGQRARSHLMGQ-DEKLKSLASFLKVSQGNVVGR------VEEIWEEYRKLQLIHAKR 777 A +A + L Q DE +K A+ V +V+ + + + + + + A + Sbjct: 764 ADKVIKAGAELKRQYDELMKKEATATSVKALSVLNKNVGDSCIPLVLKNEMRENIDAAIK 823 Query: 778 KLQLNVEDLSC----------------HKIADVNFMSHIISE--VDSKELKSVMDALQKK 819 ++ ++ + + A F+ H ++E + + L++ D Sbjct: 824 RMNATLKSQAAEARDKAAEAGKCLGASYDAAAAPFLVHQMTEFGAEREALQAFSDGFSST 883 Query: 820 IQSGI-IMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 + + + L+G EK +++ + + + +AV A+ S G GGG+P+ AQSG Sbjct: 884 VSGPVGVFLIGSDNEKALAIVSMPAAFVEKKMSAVAWAKSSI-----GKGGGKPNAAQSG 938 Query: 879 GP 880 P Sbjct: 939 LP 940 >gi|312069509|ref|XP_003137715.1| alanyl-tRNA synthetase [Loa loa] gi|307767125|gb|EFO26359.1| alanyl-tRNA synthetase [Loa loa] Length = 967 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 312/971 (32%), Positives = 470/971 (48%), Gaps = 114/971 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 IR TF+ FF+ H + SSS+IP +DPTL+F N+GM +K IF G +P + +A Sbjct: 9 IRATFINFFKDREHTYVHSSSVIPFDDPTLLFANAGMNQYKPIFLGTVEPSSEMAKLKRA 68 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AW+LLTK + Sbjct: 69 VNT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKLEVCNWAWELLTKVLGI 127 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 RLY++ + D DEE ++W I G+ I+ DNFW M + GPCGPC Sbjct: 128 PGERLYVSYFGGDDKTGLDADEECRQIWLNI-GVPPSHILSFGMKDNFWEMGDVGPCGPC 186 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEI +D+ G+ L + + +EIWNLVF+QF ++ LP ID G+G E Sbjct: 187 SEIHYDRIGDRDASHLVNADD--PMVVEIWNLVFIQFNREEDGSLKQLPHKHIDCGLGFE 244 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHLRSS 282 R+ VLQ K +NYD D+F L A T ++ + + +RV+ DH+R+ Sbjct: 245 RLVAVLQNKLSNYDTDVFTPLFSAIHNGTKVRPYSGKVGADDVDGIDMAYRVVADHIRTL 304 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELI 341 ++DG P N GRGYVLRRI+RR + YA L T + L+P + +G +PEL Sbjct: 305 CIALSDGGRPDNTGRGYVLRRILRRGIRYANEKLSATPGFLSSLVPTVVNLLGKTFPELH 364 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIM 401 + + + + E+++F KTL++G L + L + IL G+VA++LYDT+G PLD+ Sbjct: 365 KDPQTVMDIINDEEKQFLKTLNKGRTLFQKAATRLQERNILPGNVAWRLYDTYGFPLDLT 424 Query: 402 QDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD 461 Q + RGL +I F +A E R +A S + + I + Sbjct: 425 QLMAEERGL----LIDF-EAFENCRQQAAEISAARANKMRDAIDLDVS---------AIS 470 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTN--------GVSSIVKAIVQQGEIVEEAVSGQKVEV 513 L+ D + P+ N I+ A+ + V+ S + Sbjct: 471 ELKNKGIPVTDDSPKYKYYPLPPENQQTMYNFEKCEGIILALRKDKIFVDTLNSEDFGAI 530 Query: 514 VFDQTPFYAEAGGQLGDTGC--AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSL 571 + D+T FYAE GGQL DTG + G +++VQ + G V VE G L + Sbjct: 531 ILDRTNFYAEQGGQLFDTGVLREVDKGSEFIVSNVQIRG-GYVVLVGTVE-GELSVGDKV 588 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 + ID + R + NH+ TH+L+ AL ++G V Q GS + PD LRFD+T +P+T + Sbjct: 589 IQAIDEERRNLIMKNHTGTHVLNFALRKVVG-EVEQKGSLVAPDRLRFDLTSKQPLTYEQ 647 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSV--------E 682 +K +E+ +I N V + +A +G A+ Y D VR+VSV + Sbjct: 648 IKIVEEESQMLIDTNATVFAKNAPLAEARQINGLRAVFEEAYPDPVRIVSVGVPIEELLK 707 Query: 683 YEDGGVHSSA---LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 +DG + + CGGTH+ + G I L I E +I GIRRI A+TG A + D Sbjct: 708 DKDGDLAVNTAVEFCGGTHLHNVGHIGKLVITVEEAIAKGIRRIIALTGPEAFRAIHRAD 767 Query: 740 E------------KLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR---------- 777 + + K R+ +++EE + QL + ++ Sbjct: 768 RIEQRVEEAHNEIATDRIVTLDKTQFKTASKRIHDLFEEINQSQLPYCRKESIRKKAKAL 827 Query: 778 -----------------KLQLNVEDLSCHKIADVNFMSHIISE-VDSKELKSVMDALQKK 819 K+Q +L D + HI S+ + K L + +++K Sbjct: 828 QKLLDMRDREAKAAVTDKVQQEARELDASLNGDTLYTVHIFSKGANGKVLDGALKSIKK- 886 Query: 820 IQSGIIMLVGISKE-KKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQS 877 S +M I+ + K V+ V++D+ ++ A + +VL G GGG AQ+ Sbjct: 887 --SHAVMGFSINDDIGKVVVVARVSKDVANKGLQASEWISKVCRVLDGRGGGTVIQ-AQA 943 Query: 878 GGPNGNKADQA 888 G N ++A Sbjct: 944 TGNNTELVEEA 954 >gi|120611698|ref|YP_971376.1| alanyl-tRNA synthetase [Acidovorax citrulli AAC00-1] gi|205829963|sp|A1TRL4|SYA_ACIAC RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|120590162|gb|ABM33602.1| alanyl-tRNA synthetase [Acidovorax citrulli AAC00-1] Length = 948 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/380 (53%), Positives = 268/380 (70%), Gaps = 10/380 (2%) Query: 2 SNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAV 61 S+V+ IR +FL+FF GH ++PSS L+P NDPTLMFTNSGMV FK++F G +K Y Sbjct: 8 SSVADIRKSFLDFFASKGHTVVPSSPLVPGNDPTLMFTNSGMVQFKDVFLGTDKRPYVRA 67 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 T+VQ C+RAGGKHNDL+NVG T RHHTFFEMLGN+SFG YFK +++ AW+LLT+ + L Sbjct: 68 TSVQACLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKRDSLKWAWELLTEVYGLP 127 Query: 122 QRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCSE 174 + RL TVY ED+EA+ +W K GL +++IRI N DNFW MA+TGPCGPCSE Sbjct: 128 KERLLATVYAEDDEAYDIWTKEIGLPPERVIRIGDNKGGRYKSDNFWMMADTGPCGPCSE 187 Query: 175 IFFDQGECIPGGLPGS-SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G IPGG PGS E+G+R+IEIWN VFMQF+ LP +DTGMGLER+ Sbjct: 188 IFYDHGPHIPGGPPGSPDEDGDRFIEIWNNVFMQFDMAEDGSVTPLPAPCVDTGMGLERL 247 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A +LQ +NY+IDLF LIQA+ + TG N + +VI DH+R+++FL++DG++P+ Sbjct: 248 AAILQHVHSNYEIDLFAALIQAAARETGTADLANPSL--KVIADHIRATAFLVSDGVIPS 305 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NEGRGYV RRI+RRA+ + LG P L+ L +MG AYP+L + + I E L++ Sbjct: 306 NEGRGYVQRRIVRRAIRHGYKLGRKTPFFHSLVKDLVAQMGDAYPKLREQEQRITEVLKA 365 Query: 354 EDERFGKTLDRGLVLLDGVL 373 E+ERF +TL G+ LLD L Sbjct: 366 EEERFFETLANGMDLLDSAL 385 Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 174/507 (34%), Positives = 257/507 (50%), Gaps = 48/507 (9%) Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 L GD+AFKL+DT+G PLD+ D+ RG+ +D F A++ Q+++ARA Sbjct: 464 LPGDLAFKLHDTYGFPLDLTNDVCRERGVT-VDEDGFKAAMDRQKAQARAAG-------- 514 Query: 442 EKIWFSLKEKYG--ATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQG 499 K +YG A +F GYD L E K++ AI G Sbjct: 515 -KFKMDKALEYGGEANRFSGYDGL------TESAKIV-----------------AIYVDG 550 Query: 500 EIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAI 559 + +GQ VV D TPFYAE+GGQ+GD G G R + D K ++ HH Sbjct: 551 TSAQALEAGQNGVVVLDNTPFYAESGGQVGDQGVIHAGGARFAVDDTLKIRADVYGHHGR 610 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 +E G LR ++ +D R NHS TH++H AL +LGSHV Q GS + + RF Sbjct: 611 LESGTLRVGDAVQAEVDAALRAATMRNHSVTHIMHKALREVLGSHVQQKGSLVNAERTRF 670 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 D H+ P+T A+++ IE VN+ I N P R+M+ E A +GA L G KY + VRV+ Sbjct: 671 DFAHNAPVTDAQIREIERRVNEEILANTPTGARVMDIESAQKTGAMMLFGEKYGETVRVL 730 Query: 680 SVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 + S LCGGTHV+ TG+I L +V ES + AG+RRIEA+TG A ++L + Sbjct: 731 DIGT------SRELCGGTHVARTGDIGLFKVVGESGVAAGVRRIEAVTGAGALAYLQQLE 784 Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKL--QLIHAKRKLQLNVEDLSCHKIADV--- 794 + + A L+ + GR+ + E+ + L ++ K KL + D + DV Sbjct: 785 DTVAKAAGALRAPAAEITGRIGQALEQVKALEREVAALKGKLASSQGDELAGQAVDVKGL 844 Query: 795 NFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVD 854 ++ + D+K L+ MD L+ K++S I+L + K + VT D + + A + Sbjct: 845 KVLAATLPGADAKTLRDTMDKLKDKLKSAAIVLAAVDG-AKVQIAAGVTPDAMAKVKAGE 903 Query: 855 LARLSAKVLGGGGGGGRPHMAQSGGPN 881 L A + GG GGG+P MA +GG + Sbjct: 904 LVNFVASQV-GGKGGGKPDMAMAGGTD 929 >gi|313221903|emb|CBY38956.1| unnamed protein product [Oikopleura dioica] Length = 934 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 289/777 (37%), Positives = 404/777 (51%), Gaps = 95/777 (12%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 + +R FL+FF++ H + SSS IP +DPTL+F N+GM FK+IF G P Sbjct: 7 ANEVRQQFLDFFKEREHPYVHSSSTIPHDDPTLLFANAGMNQFKSIFVGTIDPSSPMAKL 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 ++ QKC+RAGGKHNDLD+VG+ + HHTFFEMLG++SFG YFK+ AIQ ++DLL K + Sbjct: 67 KSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGSWSFGDYFKKEAIQWSFDLLNKVW 126 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + RLY T + + D EA + W K L AD+I+ DNFW M +TGPCG Sbjct: 127 GIPADRLYATYFEGNPEEGLEPDNEAREEWLKY--LPADQILPGNAKDNFWEMGDTGPCG 184 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSE+ +D+ GG SS + +EIWNLVFMQ+++Q + LP S+DTG Sbjct: 185 PCSELHYDR----IGGRNASSLVNMDDPDVLEIWNLVFMQYDRQADKSLISLPAKSVDTG 240 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-------YEGNNIVN--HRVIVDH 278 MGLER+ +VLQ+K NYD D+F + E +TG + E + V+ +RV+ DH Sbjct: 241 MGLERVVSVLQDKRANYDTDMFSPYFKKIEDLTGTRAYTGLFGAEDKDGVDMAYRVLADH 300 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH------LLPALCTE 332 R+ S +ADG P N GRGYVLRRI+RRA+ Y E L M L+ + Sbjct: 301 ARTLSIALADGGRPDNVGRGYVLRRILRRAIRYGH-----EKLKMKVDDFVALVDVVVES 355 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 +G A+PEL + +E L+ E +F KTLDRG +L+ + L + L GDVA+ LYD Sbjct: 356 LGDAFPELKKDPESTKEILKEEWIQFMKTLDRGQKILERKIKQLNLTDRLPGDVAWLLYD 415 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL-GSGTTEKIWFSLKEK 451 T+G PLD+ I L +S + EE+R +A S G G TT+ S K+ Sbjct: 416 TYGFPLDLTTLIAEEHNLT----LSCEE-FEEERQKAIERSKGADGVATTDD---SHKQN 467 Query: 452 YGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKV 511 Y A Y N + + V A+ E +E S + V Sbjct: 468 YEANSAGEYTF-----------------------NSIKAKVVALRFNKEFHQECESCE-V 503 Query: 512 EVVFDQTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTE 568 +V D+T FYAE GGQ+ D G D + +VQ +A +V H G L Sbjct: 504 GIVLDKTNFYAEQGGQIYDLGYFSRENDDDFEFNVKNVQVRAG--YVLHVGTLVGKLSVG 561 Query: 569 MSLVLTIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPI 627 + L ID + R + NH+ TH+L+ L +LG Q GS + P+ LRFD T + Sbjct: 562 DEINLNIDTERRVNIMPNHTGTHVLNFGLRCVLGEGEADQKGSLVAPERLRFDFTAGGAL 621 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRI--MNREDAIASGAAALLGTKYNDRVRVVSV---- 681 A++K +E+ N++I + V ++ + + AI G A+ Y D VRVVS+ Sbjct: 622 KPAQIKQVEEICNEVITRGGAVHCQVSPLAQSKAI-QGLRAMFDETYPDPVRVVSIGVPV 680 Query: 682 ----EYEDGGVH---SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 E G S CGGTH+ L I +E +I GIRR+ A+TG A Sbjct: 681 NELLENPTSGAADKTSVEFCGGTHLRDISHARKLIITAEEAISKGIRRMIAVTGAEA 737 >gi|255587004|ref|XP_002534095.1| alanyl-tRNA synthetase, putative [Ricinus communis] gi|223525858|gb|EEF28289.1| alanyl-tRNA synthetase, putative [Ricinus communis] Length = 815 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 287/829 (34%), Positives = 445/829 (53%), Gaps = 81/829 (9%) Query: 92 MLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKI 151 MLGNFSFG YFK+ AI+ AW+L TKEF L RL+++VY +D+EAF++W G+ ++I Sbjct: 1 MLGNFSFGDYFKKEAIKWAWELSTKEFGLAADRLWVSVYKDDDEAFEIWHNEVGVPTERI 60 Query: 152 IRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQ 211 ++ DNFW+ TGPCGPCSE+++D G L + R+IE +NLVFMQ+ + Sbjct: 61 KKMGEEDNFWTSGITGPCGPCSELYYDF-HPERGFLDVDLGDDTRFIEFYNLVFMQYNKM 119 Query: 212 NKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNN 268 + L + +IDTG+GLER+A +LQ+ NNY+ DL +I+ ++ + Y + Sbjct: 120 DDGSLESLKQKNIDTGLGLERLARILQKVPNNYETDLIYPIIEKVSELANLSYSVADDQT 179 Query: 269 IVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPA 328 ++I DHLR+ FLI+DG+LP+N GRGYV+RR++RR + RLLG +L A Sbjct: 180 KTKLKIIGDHLRAIVFLISDGVLPSNIGRGYVVRRLIRRVVRTGRLLGIKGDGKGNLDGA 239 Query: 329 LCTEMGSAYPEL---------IQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHL--- 376 + EL +A ++EE L+ E+ RF +TL+RG LLD +L Sbjct: 240 FIPAIAEKVIELSVHIDSDVKARASRILEE-LQREEFRFVQTLERGEKLLDQMLEDALSS 298 Query: 377 ----GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-A 431 G L+G F LYDT+G P++I ++ G+ ID+ F+ +E+QR +++ A Sbjct: 299 GQKKGVIPCLSGKDVFLLYDTYGFPVEITTEVAEEHGVK-IDMDGFDIEMEKQRRQSQAA 357 Query: 432 HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSI 491 H++ T + L E T+F+GYD L ++ Sbjct: 358 HNV---IKLTVEDGGDLSENVSDTEFLGYDTL-----------------------SARAV 391 Query: 492 VKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-CAIGDGIR-----LQITD 545 + +++ G+ V + G +VE++ ++TPFYAE+GGQ+GD G + +G ++I D Sbjct: 392 IDSLLVNGKPVIQVPEGSEVEILLNKTPFYAESGGQIGDHGFLYVTEGESKPRAIVEIKD 451 Query: 546 VQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV 605 VQK +FVH + G+L + +D + R++ ++H+ATHLL AL ++G Sbjct: 452 VQKSLGNVFVHKGTIREGLLEVGREVEAAVDPKLRQRAKVHHTATHLLQSALKKVIGQET 511 Query: 606 SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAA 665 SQ GS + D LRFD +P+ EL+ IE +N I + T++M+ DA +GA Sbjct: 512 SQAGSLVAFDRLRFDFNFHRPLLDTELEEIEALINGWIGDATLLQTKVMSITDAKNAGAI 571 Query: 666 ALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEA 725 A+ G KY ++VRVV V GV S LCGGTHVS+T EI I+SE I +GIRRIEA Sbjct: 572 AMFGEKYGEQVRVVEVP----GV-SMELCGGTHVSNTSEIRAFKIISEQGIASGIRRIEA 626 Query: 726 ITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYR----KLQLIHAK----R 777 + G+ ++ +D ++ L S LKV V RVE + EE R ++ + +K + Sbjct: 627 VAGEAFIEYINARDSQITRLCSTLKVKAEEVTTRVENLLEELRIARNEVSAMRSKAAVYK 686 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKI-QSGIIMLVGISKEKKA 836 + + +S + + + ++D+ LKS + L + ++L E K Sbjct: 687 ASTMASKAVSVGTSKSIRVLVESMDDIDADSLKSAAEYLIDALGDPAAVVLGSYPDEGKV 746 Query: 837 SVLIVVTEDLLDRFNAVDLARLSAKVLG------GGGGGGRPHMAQSGG 879 S++ T V+L + K +G GGGGGGRP+ AQ+GG Sbjct: 747 SLVAAFTP------GVVNLGVQAGKFIGPIAKLCGGGGGGRPNFAQAGG 789 >gi|157886445|emb|CAP09517.1| novel protein similar to vertebrate alanyl-tRNA synthetase like (AARSL) [Danio rerio] Length = 996 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 287/794 (36%), Positives = 412/794 (51%), Gaps = 70/794 (8%) Query: 7 IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60 +R F++FF++ GH ++PSSS+ P DP+L+F N+GM FK I G P Y+ Sbjct: 39 VRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMVSYRR 98 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKCVRAGGKHNDL +VG+ HHTFFEMLGN+SFG YFK A +AW LLT+E+ + Sbjct: 99 VVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTEEYGI 158 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 +RLY++ + DEE +W + GL AD ++ DNFW M ETGPCGPC Sbjct: 159 PAQRLYVSYFSGDPANGLPADEETRDIWLSM-GLRADHVLPFGMKDNFWEMGETGPCGPC 217 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +EI +D L +++ + +EIWNLVFMQ+ +++ LP+ S+DTGMGLER Sbjct: 218 TEIHYDHIGNRNAALLVNADSPD-VVEIWNLVFMQYNRESNGSLRALPQCSVDTGMGLER 276 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--------IVNHRVIVDHLRSSS 283 + TVLQ K +NYD DLF L+ A Q + Y+G + +RV+ DH+R+ Sbjct: 277 LVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHIRTIC 336 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 IADG+ P G VLRRI+RRA+ ++ +L E + L+P + +G AYPEL Sbjct: 337 VCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVAHLLGDAYPELNT 396 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401 I + + + F +L +G ++D LS++ ++ VA+ LY G PLD++ Sbjct: 397 ESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFPLDLI 456 Query: 402 QDILCARGLAGIDIISFNQ--ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 +L +G I+ + LE++ + LGL S E EK Sbjct: 457 DLMLEEKG----KIVDKKEMKVLEDEYEK-----LGLQSEEDE------GEKLDQLDLHS 501 Query: 460 Y-DLLRGSKFMKEDRKVLCQKPPID---LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 +L R +D C D + + V A+ G +V E GQ V+ Sbjct: 502 LAELQRQRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVIL 561 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLT 574 DQT FYAE GGQ D G DG++ + V+ + G +V H + LRT + L Sbjct: 562 DQTSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLH 621 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D R INH+ATH+L+ AL +LG VSQ GS + + LRFD + +T +EL+ Sbjct: 622 VDEAWRLGCMINHTATHVLNFALRELLGPIVSQRGSHCSANRLRFDFSVKGTLTVSELQK 681 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-----YNDRVRVVS--------V 681 +E+ V +II QN V + E+ S A + G + Y D VRVVS + Sbjct: 682 VEELVLNIIRQNADV-----HVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLL 736 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQ 738 E S LC GTH+ TG I +VSE + G+ RI A TG +AR Sbjct: 737 ASERAEQTSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQAL 796 Query: 739 DEKLKSLASFLKVS 752 E+L+SL + + +S Sbjct: 797 QEELESLEARMGLS 810 >gi|326678670|ref|XP_001332388.4| PREDICTED: alanyl-tRNA synthetase, mitochondrial [Danio rerio] Length = 1001 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 287/794 (36%), Positives = 412/794 (51%), Gaps = 70/794 (8%) Query: 7 IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60 +R F++FF++ GH ++PSSS+ P DP+L+F N+GM FK I G P Y+ Sbjct: 44 VRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMVSYRR 103 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKCVRAGGKHNDL +VG+ HHTFFEMLGN+SFG YFK A +AW LLT+E+ + Sbjct: 104 VVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTEEYGI 163 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 +RLY++ + DEE +W + GL AD ++ DNFW M ETGPCGPC Sbjct: 164 PAQRLYVSYFSGDPANGLPADEETRDIWLSM-GLRADHVLPFGMKDNFWEMGETGPCGPC 222 Query: 173 SEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 +EI +D L +++ + +EIWNLVFMQ+ +++ LP+ S+DTGMGLER Sbjct: 223 TEIHYDHIGNRNAALLVNADSPD-VVEIWNLVFMQYNRESNGSLRALPQCSVDTGMGLER 281 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--------IVNHRVIVDHLRSSS 283 + TVLQ K +NYD DLF L+ A Q + Y+G + +RV+ DH+R+ Sbjct: 282 LVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHIRTIC 341 Query: 284 FLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQ 342 IADG+ P G VLRRI+RRA+ ++ +L E + L+P + +G AYPEL Sbjct: 342 VCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVAHLLGDAYPELNT 401 Query: 343 AKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDIM 401 I + + + F +L +G ++D LS++ ++ VA+ LY G PLD++ Sbjct: 402 ESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFPLDLI 461 Query: 402 QDILCARGLAGIDIISFNQ--ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 +L +G I+ + LE++ + LGL S E EK Sbjct: 462 DLMLEEKG----KIVDKKEMKVLEDEYEK-----LGLQSEEDE------GEKLDQLDLHS 506 Query: 460 Y-DLLRGSKFMKEDRKVLCQKPPID---LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 +L R +D C D + + V A+ G +V E GQ V+ Sbjct: 507 LAELQRQRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVIL 566 Query: 516 DQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLT 574 DQT FYAE GGQ D G DG++ + V+ + G +V H + LRT + L Sbjct: 567 DQTSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLH 626 Query: 575 IDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKS 634 +D R INH+ATH+L+ AL +LG VSQ GS + + LRFD + +T +EL+ Sbjct: 627 VDEAWRLGCMINHTATHVLNFALRELLGPIVSQRGSHCSANRLRFDFSVKGTLTVSELQK 686 Query: 635 IEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-----YNDRVRVVS--------V 681 +E+ V +II QN V + E+ S A + G + Y D VRVVS + Sbjct: 687 VEELVLNIIRQNADV-----HVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLL 741 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQ 738 E S LC GTH+ TG I +VSE + G+ RI A TG +AR Sbjct: 742 ASERAEQTSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQAL 801 Query: 739 DEKLKSLASFLKVS 752 E+L+SL + + +S Sbjct: 802 QEELESLEARMGLS 815 >gi|224436671|ref|ZP_03657675.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818] gi|313143169|ref|ZP_07805362.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818] gi|313128200|gb|EFR45817.1| alanyl-tRNA synthetase [Helicobacter cinaedi CCUG 18818] Length = 992 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 223/601 (37%), Positives = 331/601 (55%), Gaps = 101/601 (16%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-EKPVYQAVTTVQ 65 IR +LEFF+ NGH++ S L+P +D +L+FTN+GMV FK+IFTG+ P T+ Q Sbjct: 4 IRALYLEFFKSNGHKVYDSMPLVP-DDASLLFTNAGMVQFKDIFTGKIPIPSPNIATSSQ 62 Query: 66 KCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRL 125 C+RAGGKHNDL+NVG T RHHT FEMLGNFSFG YFK+ AI AW+ +T+ D+ L Sbjct: 63 LCIRAGGKHNDLENVGYTARHHTLFEMLGNFSFGAYFKKEAIAYAWEFVTEILGFDKSLL 122 Query: 126 YITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG-ECIP 184 Y+T+++ D+EA++LW + + + +I R+ DNFW M +TGPCGPCSEI+ DQG E Sbjct: 123 YVTIHESDDEAYELWHE--HIESSRIKRMGDKDNFWQMGDTGPCGPCSEIYVDQGAEFFN 180 Query: 185 GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 G EG+R++EIWNLVFMQ+E+ LPK SIDTGMGLER+ + + + NN+ Sbjct: 181 GEEDYFGGEGDRFLEIWNLVFMQYERSADGSLTPLPKPSIDTGMGLERVIALKEGEINNF 240 Query: 245 DIDLFKHLIQASEQVTGMKYEGN--------------------NIVNHRVIVDHLRSSSF 284 D LF ++Q +++T Y + +I + RVI DH R+ +F Sbjct: 241 DSSLFAPIMQCIKELTSKSYYRDSVLLKNTMGFAKDIIDSCKKDIASFRVIADHARAVAF 300 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 L+A G+ EGRGYVLRRI+RRA+ + LLG + + ++ +C MG Y LI+ K Sbjct: 301 LLAQGVNFDKEGRGYVLRRILRRAVRHGYLLGLRKAFLYEVVGVVCDSMGGHYSYLIERK 360 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILN--------------------- 383 ++E ++E+ERF +T++ G+ L + L L +L+ Sbjct: 361 NALQEQCKAEEERFFETIESGMALFNAELEKLRGYSVLSDKSANLRSPTAALTSSKLLVG 420 Query: 384 --------------------------------GDVAFKLYDTHGLPLDIMQDILCARGLA 411 G++AFKLYDT+G PLD+ QD+L GL Sbjct: 421 SLGNADFSSQSLECQDSHKVDSNKTKEAMHFSGEIAFKLYDTYGFPLDLTQDMLRELGL- 479 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 G+D+ F + ++EQ+ R++AH G G + + +L ++G +F+GY+ + Sbjct: 480 GVDMQGFEKCMQEQKERSKAHWKGSGDSVKDGDFNALLSEFGENEFVGYESISTE----- 534 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDT 531 S I+ + + VE +GQ+ ++ + TPFY E+GG +GD Sbjct: 535 -----------------SKILALLDSNFKRVESLQAGQEGWMMLESTPFYPESGGPIGDK 577 Query: 532 G 532 G Sbjct: 578 G 578 Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 114/336 (33%), Positives = 178/336 (52%), Gaps = 23/336 (6%) Query: 559 IVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 +V +L+T + +D +R ++ +HSATHLLH+AL ILGSH++Q GS + + LR Sbjct: 662 VVATSMLKTGDLVKAQVD-SSRFEIIKHHSATHLLHYALRQILGSHIAQAGSLVEANRLR 720 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV 678 FD +H K ++ +L+ IE VN I ++ P V M + A A GA AL G KY + VRV Sbjct: 721 FDFSHPKALSVNDLEQIEALVNSKITESSPQVCETMGIDQAKAKGAMALFGEKYGESVRV 780 Query: 679 VSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ 738 +++ S LCGG H+ +T EI YIV ESS+ +G+RRIEA+ G+ A + Sbjct: 781 ITLG------DSIELCGGIHIHNTAEIGSFYIVRESSVSSGVRRIEAVCGKAAYHYGKAA 834 Query: 739 DEKLKSLASFLK---VSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVN 795 E +KSL LK V QG V +++ +E R+ + K + +V+ L ++ V Sbjct: 835 LESIKSLKEQLKAQDVLQG--VAKLQNALKEARE-----SANKAKQSVKSLDYEEVNGVK 887 Query: 796 FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDL 855 + + V++KE K ++D + + + I+LV E V + + A Sbjct: 888 LIVLKLDLVEAKEAKDIIDRAKNENEKVAILLV---TESGGKVSLTAGVKGVSSLKAGAW 944 Query: 856 ARLSAKVLGGGGGGGRPHMAQSGGP--NGNKADQAI 889 + A++L GG GGGR A +GG NK +A+ Sbjct: 945 VKQVAQIL-GGNGGGRDDFATAGGKVTESNKVQEAL 979 >gi|313229137|emb|CBY23722.1| unnamed protein product [Oikopleura dioica] Length = 941 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 300/839 (35%), Positives = 428/839 (51%), Gaps = 95/839 (11%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 + +R FL+FF++ H + SSS IP +DPTL+F N+GM FK+IF G P Sbjct: 7 ANEVRQQFLDFFKELEHPYVHSSSTIPHDDPTLLFANAGMNQFKSIFVGTIDPSSPMAKL 66 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 ++ QKC+RAGGKHNDLD+VG+ + HHTFFEMLG++SFG YFK+ AIQ +++LL K + Sbjct: 67 KSAVNSQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGSWSFGDYFKKEAIQWSFELLNKVW 126 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + RLY T + + D EA + W K L AD+I+ DNFW M +TGPCG Sbjct: 127 GIPADRLYATYFEGNPEEGLEPDNEAREEWLKY--LPADQILPGNAKDNFWEMGDTGPCG 184 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSE+ +D+ GG SS + +EIWNLVFMQ+++Q + LP S+DTG Sbjct: 185 PCSELHYDR----IGGRNASSLVNMDDPDVLEIWNLVFMQYDRQADKSLISLPAKSVDTG 240 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-------YEGNNIVN--HRVIVDH 278 MGLER+ +VLQ+K NYD D+F + E +TG + E + V+ +RV+ DH Sbjct: 241 MGLERVVSVLQDKRANYDTDMFSPYFKKIEDLTGTRAYTGLFGAEDKDGVDMAYRVLADH 300 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAY 337 R+ S +ADG P N GRGYVLRRI+RRA+ Y L + L+ + +G A+ Sbjct: 301 ARTLSIALADGGRPDNVGRGYVLRRILRRAIRYGHEKLNMKVDDFVALVDVVVESLGDAF 360 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + +E L+ E +F KTLDRG +L+ + L + L GDVA+ LYDT+G P Sbjct: 361 PELKKDPESTKEILKEEWIQFMKTLDRGQKILERKIKQLNLTDRLPGDVAWLLYDTYGFP 420 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGL-GSGTTEKIWFSLKEKYGATQ 456 LD+ I L +S + EE+R +A S G G TT+ S K+ Y A Sbjct: 421 LDLTTLIAEEHNLT----LSCEE-FEEERQKAIERSKGADGVATTDD---SHKQNYEANS 472 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 Y N + + V A+ E +E S + V +V D Sbjct: 473 AGEYTF-----------------------NSIKAKVVALRFNKEFHQECESCE-VGIVLD 508 Query: 517 QTPFYAEAGGQLGDTGC---AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVL 573 +T FYAE GGQ+ D G D + +VQ +A +V H G L + L Sbjct: 509 KTNFYAEQGGQIYDLGYFSRENDDDFEFNVKNVQVRAG--YVLHVGTLVGKLSVGDEINL 566 Query: 574 TIDYQNRRQLSINHSATHLLHHALSTILGS-HVSQNGSCITPDGLRFDVTHSKPITSAEL 632 ID + R + NH+ TH+L+ L +LG Q GS + P+ LRFD T + A++ Sbjct: 567 NIDTERRVNIMPNHTGTHVLNFGLRCVLGEGEADQKGSLVAPERLRFDFTAGGALKPAQI 626 Query: 633 KSIEDNVNDIIAQNLPVVTRI--MNREDAIASGAAALLGTKYNDRVRVVSV--------E 682 K +E+ N++I + V ++ + + AI G A+ Y D VRVVS+ E Sbjct: 627 KQVEEICNEVITRGGAVHCQVSPLAQSKAI-QGLRAMFDETYPDPVRVVSIGVPVNELLE 685 Query: 683 YEDGGVH---SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQD 739 G S CGGTH+ L I +E +I GIRR+ A+TG A D Sbjct: 686 NPTSGAADKTSVEFCGGTHLRDISHARKLIITAEEAISKGIRRVIAVTGAEAEK----AD 741 Query: 740 EKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMS 798 + + LA ++ + +V E+ E I AK + N +S K +V +S Sbjct: 742 RQAQRLAKANQLKEKDVNELKAEVKE------AIKAKNTAEANQRAISLGKTIEVAPIS 794 >gi|83775369|dbj|BAE65489.1| unnamed protein product [Aspergillus oryzae] Length = 939 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 259/696 (37%), Positives = 375/696 (53%), Gaps = 65/696 (9%) Query: 76 DLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYD---- 131 DLD+VG+ + HHTFFEMLGN+SFG YFK+ AI +W+L+TK + LD +RLY+T ++ Sbjct: 73 DLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAINYSWELMTKIYGLDPQRLYVTYFEGSKE 132 Query: 132 ----EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGL 187 D EA +LWK + G+ D I+ DNFW M + GPCGPCSEI +D+ GG Sbjct: 133 GGLSPDLEAKELWKAV-GVPEDHILPGNMKDNFWEMGDQGPCGPCSEIHYDR----IGGR 187 Query: 188 PGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNY 244 S +++ +EIWN VF+Q+ +++ + LP +DTGMG ER+ +VLQ K++NY Sbjct: 188 NASNLVNQDDPNVLEIWNNVFIQYNRESDRSLKPLPNKHVDTGMGFERLVSVLQNKSSNY 247 Query: 245 DIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDHLRSSSFLIADGILPANE 295 D D+F L Q + +TG + Y+G V +RV+ DH+R+ +F I+DG+ P NE Sbjct: 248 DTDVFSPLFQTIKDITGARPYQGRFGVEDADGIDTAYRVVADHVRTLTFAISDGVAPNNE 307 Query: 296 GRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 GRGYV+RR++RR YAR E ++P L +MG +PE+ + + + E L Sbjct: 308 GRGYVIRRVLRRGARYARKYFRVEIGNFFSKIVPTLVDQMGDMFPEVKRKQQDVMEILDE 367 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLA 411 E+ F KTLDRG + D+ L+G ++LYDT G P+D+ + + RGL Sbjct: 368 EEISFAKTLDRGERQFEHYAQQAKAKGDDKLHGADVWRLYDTFGFPVDLTRIMAEERGLR 427 Query: 412 GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKE 471 ID F EE RSRA+ S G + + + + G + + D+ + + K Sbjct: 428 -IDDTEF----EEARSRAKEASKGQKKAAADTVKLDVHD-LGKLEKMN-DVPKTNDSAKF 480 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEI---VEEAVSGQKVEVVFDQTPFYAEAGGQL 528 DR +++ VKAI E+ G ++ ++ D+T FYAE GGQ Sbjct: 481 DR------------GNITAQVKAIYHGKSFHLSTEQIPEGDQLGLILDRTNFYAEQGGQE 528 Query: 529 GDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINH 587 DTG + DG L++ DVQ A G +H ++ G L ++ D R + NH Sbjct: 529 NDTGRIVIDGQAELEVGDVQLYA-GYVLHTGFMKYGSLSVGDEVICEYDELRRWPIRNNH 587 Query: 588 SATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNL 647 + TH+L+ AL +LG V Q GS + + LRFD +H P+T +L+ IED + I QN Sbjct: 588 TGTHILNFALKEVLGDGVEQKGSLVAAEKLRFDFSHKSPVTDKDLERIEDISTEYIRQNC 647 Query: 648 PVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH-----------SSALCG 695 V ++ + A SG A+ G Y D VRVVSV E + S CG Sbjct: 648 AVYSQEVPLATARQISGVRAVFGETYPDPVRVVSVGVELEEILKNVKDPRWEKVSIEFCG 707 Query: 696 GTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 GTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 708 GTHVQKTGDIKELVILEESGIAKGIRRIIAVTGEDA 743 >gi|327262296|ref|XP_003215961.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like [Anolis carolinensis] Length = 988 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 313/987 (31%), Positives = 476/987 (48%), Gaps = 133/987 (13%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 + +R +F+ FFQ K GH+++ SS + P DP L+F N+GM FK IF G P Y Sbjct: 38 ARVRQSFIRFFQEKYGHQVVASSPVRPRADPGLLFVNAGMNQFKPIFLGTADPRSEMTRY 97 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 + V QKCVRAGGKHNDL++VGR HHTFFEMLGN+SFG YFKE A ++AW+LLT+ + Sbjct: 98 RRVVNSQKCVRAGGKHNDLEDVGRDVYHHTFFEMLGNWSFGDYFKEEACKMAWELLTEVY 157 Query: 119 DLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 ++ + LY+T + DEE ++W GLS ++ DNFW M ++GPCG Sbjct: 158 EIPKDHLYVTYFGGNAALGLSADEETREIWLN-QGLSPSHVLPFEMKDNFWEMGDSGPCG 216 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PC+EI +D I GG ++ + +EIWNLVFMQ+ ++ LP+ +DTG Sbjct: 217 PCTEIHYDH---IGGGRNAAAMVNKGNPDVVEIWNLVFMQYNREADGRLHQLPQHHVDTG 273 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQ-VTGMKYEG------NNIVN--HRVIVDH 278 MGLER+ T+LQ K +NYD DLF ++ A + G Y+G VN +RV+ DH Sbjct: 274 MGLERLMTILQNKRSNYDTDLFTPILDAIHKGCGGPNYQGLVGEADAGGVNMAYRVVADH 333 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337 +R+ S IADG+ P G VLR I+RRA+ + + + P + +L+P + +G AY Sbjct: 334 VRTLSICIADGVYPGMSGAELVLRHILRRAVRFCSEVLHAPPGFLANLVPVVVEILGDAY 393 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + + + + F +L +G +++ L + ++ ++A+ LY G P Sbjct: 394 PELHRDTDKVMNIISENEAAFLSSLMQGRHVINRALQQMDHSKVFPVEIAWSLYSNLGFP 453 Query: 398 LDIMQDILCARGL----AGIDIISFNQALEEQRSR----AR----AHSLGL----GSGTT 441 LD++ +L +G+ A +D ++ A + RS+ AR HSL G +T Sbjct: 454 LDLIALMLEEKGVQLDKAALDCLAQEDAERKARSQQEQSARMLLDVHSLAQLRRDGVPST 513 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 + S K Y + K+ R V Q + V + + G + Sbjct: 514 DD---SFKYAY--------------EIGKDGRYVFKQ---------CKATVLMLYKDGSL 547 Query: 502 VEEAV-SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR---LQITDVQKKAEGIFVHH 557 +E GQ+ V+ DQT FYAE GGQ D G + G + + VQ A +V H Sbjct: 548 QKEVSGGGQRCGVLLDQTCFYAEQGGQAPDQGYMVCGGQQDTFFPVVSVQVSAG--YVIH 605 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 ++ L+ + L +D +R +NH+ATHLL+ L +LG Q GS +T + L Sbjct: 606 EVIASEALKAGDQVQLFVDEAHRMACMVNHTATHLLNFVLRQVLGESTEQCGSHVTAEHL 665 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV- 676 RFDV P+ + L+ +E+ + +II +N V T E+ + + G + D V Sbjct: 666 RFDVRTQVPVKTEHLQEVENVIQEIIKKNEVVCT-----EEVPLKLTSDIQGLRKLDDVY 720 Query: 677 --------------RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRR 722 R + E +D S LC GTH+ TG I I+SE + GI Sbjct: 721 PDVVRVVSVGVPVKRALVRESKDAMHTSVELCCGTHLLRTGAIQDFTIISERQLVKGISH 780 Query: 723 IEAITGQRA-------------------RSHLMG----QDEKLKSLASFLKVSQGNVV-- 757 I A+TG++A R L G + ++L +L V+ N Sbjct: 781 IIALTGEQAKKAREDGRTFAKEVESLTIRVKLGGATIDEAQRLSKEVGYLTVTVYNTAMP 840 Query: 758 -GRVEEIWEEYRKLQLIH--AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LK 810 + E+ + LQ A RKL+ + HK+ II + + E L Sbjct: 841 HWQKRELQATLKALQRAANTAVRKLETRLAAEEAHKLLAKYSREAIIVDTIAVESPSILM 900 Query: 811 SVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGG 870 V++ L KI + +ML+ + V+++ L F+A D A LS GG GG Sbjct: 901 KVVNQLCAKIPAASVMLLSPQTSGQVFCACQVSKNSLPTFSASDWA-LSVCTQMGGKSGG 959 Query: 871 RPHMAQSGGPNGNKADQAIAGVASFLK 897 +A+ G N N +A+A + K Sbjct: 960 SEVVAKGMG-NTNGLQRALATAQEYAK 985 >gi|126632676|emb|CAM56636.1| novel protein similar to vertebrate aminolevulinate delta-synthase 1 (ALAS1) [Danio rerio] Length = 917 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 285/792 (35%), Positives = 409/792 (51%), Gaps = 70/792 (8%) Query: 7 IRTTFLEFFQKN-GHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQA 60 +R F++FF++ GH ++PSSS+ P DP+L+F N+GM FK I G P Y+ Sbjct: 2 VRRKFIDFFREGYGHRVVPSSSVRPRGDPSLLFVNAGMNQFKPILLGCADPRSEMVSYRR 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKCVRAGGKHNDL +VG+ HHTFFEMLGN+SFG YFK A +AW LLT+E+ + Sbjct: 62 VVNSQKCVRAGGKHNDLQDVGKDVYHHTFFEMLGNWSFGDYFKVEACAMAWRLLTEEYGI 121 Query: 121 DQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 +RLY++ + DEE +W + GL AD ++ DNFW M ETGPCGPC Sbjct: 122 PAQRLYVSYFSGDPANGLPADEETRDIWLSM-GLRADHVLPFGMKDNFWEMGETGPCGPC 180 Query: 173 SEIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 +EI +D G L + + +EIWNLVFMQ+ +++ LP+ S+DTGMGLE Sbjct: 181 TEIHYDHIGNRNAASLVNA--DSPDVVEIWNLVFMQYNRESNGSLRALPQCSVDTGMGLE 238 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNN--------IVNHRVIVDHLRSS 282 R+ TVLQ K +NYD DLF L+ A Q + Y+G + +RV+ DH+R+ Sbjct: 239 RLVTVLQGKRSNYDTDLFTPLLSAIHQCSKAPAYQGRTGAADVAQLDMAYRVVADHIRTI 298 Query: 283 SFLIADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELI 341 IADG+ P G VLRRI+RRA+ ++ +L E + L+P + +G AYPEL Sbjct: 299 CVCIADGVYPGMAGAELVLRRILRRAVRFSTEVLQAPEGALASLVPTVANLLGDAYPELN 358 Query: 342 QAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD-EILNGDVAFKLYDTHGLPLDI 400 I + + + F +L +G ++D LS++ ++ VA+ LY G PLD+ Sbjct: 359 TESDRIMDLINQNEAHFLSSLKQGRRVIDRTLSNMDENSSFFPASVAWSLYRNLGFPLDL 418 Query: 401 MQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGY 460 + +L +G +D + LE++ ++ G + SL E Sbjct: 419 IDLMLEEKGKI-VDKKEM-KVLEDEYEKSEEDE---GEKLDQLDLHSLAE---------- 463 Query: 461 DLLRGSKFMKEDRKVLCQKPPID---LTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 L R +D C D + + V A+ G +V E GQ V+ DQ Sbjct: 464 -LQRQRVPHTDDSPKYCYSVGSDGQYVFEPCKASVLALYCDGALVSEVRQGQHCAVILDQ 522 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE GGQ D G DG++ + V+ + G +V H + LRT + L +D Sbjct: 523 TSFYAEQGGQANDQGYFTKDGLQDVLFPVKCVRLAGGYVVHKVTAAETLRTGDQVHLHVD 582 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R INH+ATH+L+ AL +LG VSQ GS + + LRFD + +T +EL+ +E Sbjct: 583 EAWRLGCMINHTATHVLNFALRELLGPVVSQRGSHCSANRLRFDFSVKGSLTVSELQKVE 642 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTK-----YNDRVRVVS--------VEY 683 + V +II QN V + E+ S A + G + Y D VRVVS + Sbjct: 643 ELVLNIIRQNADV-----HVEEVPLSSAKQIAGLRTVDELYPDPVRVVSVAVPVSDLLAS 697 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ---RARSHLMGQDE 740 E S LC GTH+ TG I +VSE + G+ RI A TG +AR E Sbjct: 698 ERAEQTSVELCCGTHLLRTGAIRDFVVVSERQMMKGVCRIVAFTGDDAIKAREAGQALQE 757 Query: 741 KLKSLASFLKVS 752 +L+SL + + +S Sbjct: 758 ELESLEARMGLS 769 >gi|126310118|ref|XP_001367753.1| PREDICTED: similar to alanyl-tRNA synthetase like [Monodelphis domestica] Length = 1109 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 284/894 (31%), Positives = 451/894 (50%), Gaps = 113/894 (12%) Query: 3 NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57 + S IRT FL FF+ ++GH+L+PS+S++P +DP L+F N+GM FK IF G P Sbjct: 71 SASVIRTAFLHFFRDRHGHQLVPSASVMPRSDPGLLFVNAGMNQFKPIFLGTVDPRSEMA 130 Query: 58 -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLT 115 ++ V QKCVR GG+HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT Sbjct: 131 RFRRVANSQKCVRTGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLT 190 Query: 116 KEFDLDQRRLYITVYD--------EDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 +++ Q RL++T + D E+ +W + G+ + +++ ++NFW M E G Sbjct: 191 HIYEIPQDRLWVTYFGGNPPEGLAPDYESRDIWLSL-GVPSSRVLSFGPSENFWEMGEIG 249 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPC+EI +D + GG+ G + +E+WNLVFMQ+ ++ +LP+ +DTG Sbjct: 250 PCGPCTEIHYD----LSGGV-GPPQ----LVELWNLVFMQYNREADGSLQLLPQRHVDTG 300 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQ-VTGMKYE--------GNNIVNHRVIVDH 278 MGLER+ VLQ K + YD DLF L+ A +Q Y+ G+ + +RV+ DH Sbjct: 301 MGLERLVAVLQNKRSTYDTDLFSPLLTAIQQGCRAPPYQGQVGKADGGHTDMAYRVVADH 360 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337 +R+ S +ADG+ P G VLR+I+RRA+ ++ + P + L+P + +G AY Sbjct: 361 IRTLSICMADGVYPGMSGASLVLRQILRRAIRFSSEVLQAPPGFLSSLVPIVVETLGDAY 420 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLP 397 PEL + I + E+ F +L+RG ++D L LG + +VA+ L GLP Sbjct: 421 PELQKNTTQITSLVAEEETAFLSSLERGRRVIDRTLQQLGPSHLFPAEVAWSLSGNLGLP 480 Query: 398 LDIMQDILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQ 456 LD++ +L +G+ +D Q A EE + R++A + K Sbjct: 481 LDLVGLMLEEKGVQ-LDSAGLEQLAQEEAQRRSQAQ----------------QAKPAKKA 523 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPID---------LTNGV-------SSIVKAIVQQGE 500 + D+ S+ ++ PP D L NG + I++ G Sbjct: 524 ELRLDIHALSQLQRQG------VPPTDDSSKYNYSLLPNGSYEFGACEAEIIQLYTLDGA 577 Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQITDVQKKAEGIFVHHAI 559 + GQ+ ++ D+T FYAE GGQ D G I G + + + + G F+ H + Sbjct: 578 ATDSVGGGQRCGLLLDKTNFYAEQGGQACDRGYLICKGQQDVLFPVIGAQIYGGFILHEV 637 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 + L+ + L +D + R H+ATHLL AL LG + Q GS ++P+ LRF Sbjct: 638 IALETLKVGDQVQLHVDEEWRLGCMKKHTATHLLSWALRQELGPNTQQCGSHLSPERLRF 697 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR-- 677 DV P+TS +L+++E+ + + Q+ PV + E L Y D VR Sbjct: 698 DVATLAPLTSEQLQAVEETIRVAVGQDKPVYMAEVALELTTQIPGLRSLDEVYPDPVRVV 757 Query: 678 -------VVSVEYEDGGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQ 729 + + +S LC GTH+ TG I L IV E + GI R+ A+TG+ Sbjct: 758 SVGVPVAIALAPTSQAALQTSVELCCGTHLLRTGAIGDLTIVGEKPLSKGIVRLVAVTGE 817 Query: 730 RA-RSHLMGQDEKLKSLASFLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDL 786 +A ++ +GQ+ + A+ ++ QG NVV L A +L V+ Sbjct: 818 QAQQARDVGQNLAQEVEAASARLHQGSQNVV----------EAQHLSKAVGRLSDTVD-- 865 Query: 787 SCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-VGISKEKKASVL 839 + ++ + +EL++++ LQ++ + I L +G++ K +L Sbjct: 866 -----------TAVMPQWQRRELQAILKRLQRRANTAIRKLEIGLATAKSREIL 908 >gi|297516502|ref|ZP_06934888.1| alanyl-tRNA synthetase [Escherichia coli OP50] Length = 358 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/357 (56%), Positives = 255/357 (71%), Gaps = 12/357 (3%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LIQA +VTG N + RVI DH+RS +FLIADG++P Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSL--RVIADHIRSCAFLIADGVMP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 +NE RGYVLRRI+RRA+ + +LG E L+ L MGSA +L + + +E+ Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQ 358 >gi|67594831|ref|XP_665905.1| cytosolic tRNA-Ala synthetase [Cryptosporidium hominis TU502] gi|54656773|gb|EAL35675.1| cytosolic tRNA-Ala synthetase [Cryptosporidium hominis] Length = 989 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 286/794 (36%), Positives = 427/794 (53%), Gaps = 95/794 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61 +R F+++F+ H SS +IP NDPT++F N+GM FK+IF G +P + V Sbjct: 14 VRRQFVKYFEGLDHTFYRSSPVIPLNDPTILFINAGMNQFKSIFLGTVEPNSELSKLVRV 73 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE AI+ A+ LLT+ + + Sbjct: 74 ANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIEWAFKLLTQVYGIP 133 Query: 122 QRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY T + DEEA K+W K L D+I+ + +NFW MA+TGPCGPC Sbjct: 134 KDRLYATYFGGDPKLPSCPPDEEAKKIWLKY--LPEDRILSCGSKENFWEMADTGPCGPC 191 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI +D+ GG SS ++ IEIWNLVFMQ+ ++ LPK +DTGMG Sbjct: 192 SEIHYDR----IGGRDASSLVNKDDPDVIEIWNLVFMQYYREVDSTLTPLPKKCVDTGMG 247 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGM------KYEGN--NI-------VNHRV 274 LER+ ++LQ KT+NYDIDLFK + QV +Y G +I +++RV Sbjct: 248 LERLVSILQNKTSNYDIDLFKPIFDQIYQVISSSGVQIPRYSGKVGDIDDPEMIDMSYRV 307 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA----RLLGYTEPLMMHLLPALC 330 I DH+R+ + IADG +P+NEGRGYVLRRI+RRA+ Y + EP L+ ++ Sbjct: 308 ISDHIRTLTIAIADGCIPSNEGRGYVLRRILRRAIRYGSQYLKAGSNGEPWFYKLVDSVS 367 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---------I 381 MG+ Y E+ + +I+E + E+++F KTL +G + V++ L + + Sbjct: 368 NIMGNYYKEIPENIQIIKEVILDEEKQFSKTLFKGTERFNKVINKLKSSQNNQQDQNKKL 427 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 AF+LY T+G P+D+ + + +G D F +E H L G Sbjct: 428 FPASEAFQLYSTYGFPMDLTELMANEQGF-DFDRQGFQLCMEN-------HHLA-SEGKN 478 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 K + L K + + G K + K Q + + S+++ AI ++ Sbjct: 479 NKSFDDLILKPDIQNNLIVEF--GLKETDDQYKYQTQ-----IKDFYSNLI-AIFDGNQL 530 Query: 502 VEEA-VSGQKVEVVFDQTPFYAEAGGQLGDTGCAI------GDGIRLQITDVQKKAEGIF 554 ++ + G+ + ++FD+T FY+E+GGQ+ DTG + + Q+ D KK Sbjct: 531 IDATEIQGKVIGLIFDKTTFYSESGGQVADTGFIDFQYNNNDETSKFQVIDC-KKFGNYV 589 Query: 555 VHHAIVERGILR--TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612 +H I+ +G + E+ ++++DY R + NH+ TH+L+ AL ILGS Q GS + Sbjct: 590 LHIGILLQGKIEISPELKSLMSVDYSRRNLIKKNHTGTHILNFALRQILGSTCDQRGSVV 649 Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLG 669 P+ LRFD + KP+T +++ IE V+ II + V + + E +IA A+ G Sbjct: 650 DPNRLRFDFSSQKPLTLDQIEEIEKMVSQIIQEKQTVYCQTV--ELSIAKQIPNIRAIFG 707 Query: 670 TKYNDRVRVVSV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 Y D VRV+SV + D S CGGTHV +T EI+ I+SE I Sbjct: 708 ETYPDPVRVLSVSKSVDSLINSQTDNNDQEKVSIEFCGGTHVENTSEIISFSIISEEGIA 767 Query: 718 AGIRRIEAITGQRA 731 GIRRI A+T ++ Sbjct: 768 KGIRRIVAVTDNQS 781 >gi|281208624|gb|EFA82800.1| alanyl-tRNA synthetase [Polysphondylium pallidum PN500] Length = 958 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 312/990 (31%), Positives = 479/990 (48%), Gaps = 131/990 (13%) Query: 1 MSNVSSIRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59 + V+ IR TF++FF K H +PSS ++P +DPTL+F N+GM FK IF GQ P + Sbjct: 5 VPTVNEIRKTFIDFFVNKCEHTFVPSSQVVPHDDPTLLFANAGMNQFKPIFLGQADPRSE 64 Query: 60 AV-----TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLL 114 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFK AI AW+LL Sbjct: 65 QAKLKRAANSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKREAITWAWELL 124 Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166 T + LD+ RLY + + + D EA +W++ L AD+++ +NFW M +T Sbjct: 125 TDVYKLDKERLYASYFGGAADKGLEPDLEAKSIWEEF--LPADRVLPFGMKENFWEMGDT 182 Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCGPCSEI FD+ E G + + IEIWNLVF+Q+ ++ + LP +DT Sbjct: 183 GPCGPCSEIHFDKIEGRTGSQALVNADDPTLIEIWNLVFIQYNREADKSLRPLPNKHVDT 242 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN----------HRVIV 276 GMGLER+ +++Q+ NYD D+F + ++VTG V +RVI Sbjct: 243 GMGLERVTSIIQKVGTNYDTDIFGPIFTEIQKVTGFTEPYGGKVGKDDPEQVDMAYRVIA 302 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMH-LLPALCTEMGS 335 DH+R+ +F +ADG +P+++GRG VLRRI+RRA+ Y + P H L+ + G Sbjct: 303 DHIRTLTFSLADGAIPSSDGRGSVLRRILRRAIRYGKQKLKAPPGFFHRLVDVVVAHFGE 362 Query: 336 AYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHG 395 +PEL I + SE++ F +TLD+G++ + +L + +++ A L + G Sbjct: 363 FFPELRSRPQHIISVIESEEKMFERTLDKGILEFENILKKTS-NGVISASHAHYLSSSFG 421 Query: 396 LPLDIMQDILCARGLAGIDIISFNQALEE------QRSRARAHSLGLGSGTTEKIWFSLK 449 P+D+ + +G+ +D+ + +E+ +R + + L LG+ E I K Sbjct: 422 FPIDLTTLMAEEKGVK-VDLKGYEVLVEKFAEDSRRRQKEKKSELNLGA---EPISILQK 477 Query: 450 EKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQ 509 T ++ E ++ V ++VKAI E++++ + Sbjct: 478 RSIQPTN---------DQYKYEQKE-------------VQTVVKAIWTGKELIDQLTAEH 515 Query: 510 K---VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGIL 565 K V V+ + T FY E GGQ+ D G D T K G +V H G + Sbjct: 516 KNTLVGVILESTNFYPEQGGQIYDIGNINFVDSQNTAFTVSDCKVFGGYVLHI----GYI 571 Query: 566 RTEMS-------LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLR 618 + + T+DY R + NH++TH+++ AL +LGS V Q GS + LR Sbjct: 572 SDDCDKLAVGDKVETTVDYTRRIPIMSNHTSTHMVNFALRQVLGSTVDQRGSLVDNTRLR 631 Query: 619 FDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVR 677 FD + +K ++ EL + VN++IA+ L V + + A G A+ G Y D VR Sbjct: 632 FDFSSTKGMSKDELVKTDAIVNELIAKQLNVYCKDVELASAKKIYGLRAVFGEVYPDPVR 691 Query: 678 -----------VVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAI 726 + + + +S CGGTH++++ E L IVSE ++ AG+RR+ A+ Sbjct: 692 VVSVGVDVNDLLANPSNTEWANYSIEFCGGTHIANSKEAELFTIVSEEAVSAGVRRLFAV 751 Query: 727 TGQRAR----------------SHLMGQDEK--LKSLASFLKVSQGNVVGRVEEIWEEYR 768 TG A + L G+D K + SL + L+ + R+ E+ E+ Sbjct: 752 TGTDASVVYDNNRKLETAFTDAAKLTGKDLKDHVPSLLALLESHPVSASKRI-ELLEKLN 810 Query: 769 KLQLIHAKRKLQLNVEDLSCHKIADVN-FMSHIISEVDSKEL-------------KSVMD 814 LQ K ++L I+D N + II+++ + ++ D Sbjct: 811 NLQTTVKKY-----FKELESSSISDSNKVVDEIIAQLTESKAPVHVGVINLGLNNSAITD 865 Query: 815 AL---QKKIQSGIIMLVGISKE-KKASVLIVVTEDLLDRFNAVDLARLSAKVLG--GGGG 868 A+ QKK IM V +E KK VL +V + KV GG G Sbjct: 866 AIKNVQKKCPDTAIMFVSPDQEKKKVCVLSIVPPTSTAASKGLTANGWVVKVAEQLGGKG 925 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 GG+ +AQ G D A+ F KK Sbjct: 926 GGKTDVAQGTGSQIENVDNAVEFAKDFAKK 955 >gi|323452905|gb|EGB08778.1| hypothetical protein AURANDRAFT_53556 [Aureococcus anophagefferens] Length = 1031 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 272/807 (33%), Positives = 408/807 (50%), Gaps = 109/807 (13%) Query: 7 IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK---------- 55 IR TF++ GH PSSS++P DPTL+F N+GM +K+IF G Sbjct: 32 IRDTFVQRAGGARGHTHWPSSSVVPHEDPTLLFANAGMNQYKSIFLGLAPRRKRRRATPD 91 Query: 56 ------PVYQAVTTV---------------QKCVRAGGKHNDLDNVGRTNRHHTFFEMLG 94 P+ T+ QKC+RAGGKHNDLD+VG+ HHTFFEMLG Sbjct: 92 DYNTPLPIPSFGGTIDPKTKMATLKRACNSQKCIRAGGKHNDLDDVGKDLYHHTFFEMLG 151 Query: 95 NFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY----------DEDEEAFKLWKKIS 144 N+SFG YFKE AI++AW+ LT EF LD RLY+T + DEE ++W K Sbjct: 152 NWSFGDYFKEEAIRMAWECLTVEFQLDPDRLYVTYFGGDALKAPGVPSDEETRQIWLKY- 210 Query: 145 GLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGSS---EEGERYIEIW 201 + A++++ DNFW M +TGPCGPC+EI +D+ GG ++ + IEIW Sbjct: 211 -VPAERVLPFDAGDNFWEMGDTGPCGPCTEIHYDR----VGGRDAAALVNMDDPDVIEIW 265 Query: 202 NLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG 261 N VF+Q+ ++K LP +DTGMG ER+A++LQ + +NYD D+F L + V+G Sbjct: 266 NNVFIQY-NRDKFGLKELPAQHVDTGMGFERLASILQGQMSNYDTDIFTPLFAEIQAVSG 324 Query: 262 --MKYEG--------NNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCY 311 + Y G + +RV+ DH+R+ +F I DG +P +GRGYVLRR++RRA+ Y Sbjct: 325 CPVAYAGKIGDEDKETKDMAYRVVADHVRTLTFAITDGAVPDTQGRGYVLRRVLRRAVWY 384 Query: 312 AR-LLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLD 370 + LG + + L+P LC +G A+PE+++AK + L E+ F +T+D+G + Sbjct: 385 GQHFLGAPKGFVYKLVPKLCEVLGEAFPEIVKAKDTVMAVLEGEERDFNRTIDKGARFFN 444 Query: 371 GVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR 430 L K G AF L + G PLD+ + + RG+ +D+ ++ AL+E++ + Sbjct: 445 KQAEKLPKGAPFPGSDAFVLSGSLGFPLDLCEIMAEERGMT-VDVAGYHAALKEEQDKNA 503 Query: 431 AHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLT----- 485 A + + + + A K E + V +P + Sbjct: 504 AALAKRKAARSAGADMTCAAEQTAALAA----AGAPKTESEGKYVWNARPAAKVVALYVG 559 Query: 486 NGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIR-LQIT 544 G +V + + AV+G V D T FYAE GGQ+ DTG + D + L + Sbjct: 560 KGGGPKGDGLVDAVDPSKHAVAG----AVLDATSFYAEMGGQVYDTGALLKDDAKILDVE 615 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTIL--G 602 DVQ G +V H G L+ + +DY R +++ NH+ TH+L+ AL +L G Sbjct: 616 DVQ--VYGGYVVHVGAPLGPLKVGDDVACAVDYDRRVRVAPNHTMTHVLNFALREVLLGG 673 Query: 603 SH-------------VSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 S +Q GS + + LRFD P+T+ +LK++E VN+ IA L V Sbjct: 674 SEGAKADAEKTGVDRCAQRGSYVDDERLRFDFAWDAPLTADQLKAVEAIVNETIAAGL-V 732 Query: 650 VTRIMNREDAIASGAA--ALLGTKYNDRVRVVSVEYEDGGVHSSA-----------LCGG 696 V + DA + + A+ G Y D VRVV+V V ++ LCGG Sbjct: 733 VDAVETPLDAAMAVESLRAMKGEAYPDPVRVVAVGAPVADVVAAPCGAAWRGMSVELCGG 792 Query: 697 THVSSTGEIMLLYIVSESSIRAGIRRI 723 THV +T + + ++ E+ I G+RR+ Sbjct: 793 THVRNTKDAVGFALLEENGIAKGVRRV 819 >gi|313678597|ref|YP_004056337.1| alanine--tRNA ligase [Mycoplasma bovis PG45] gi|312950312|gb|ADR24907.1| alanine--tRNA ligase [Mycoplasma bovis PG45] Length = 880 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 292/915 (31%), Positives = 465/915 (50%), Gaps = 106/915 (11%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF+ H ++ S SLIP NDP+L++ NSG+ KN F+G++ P +T Sbjct: 7 TEIRQKWLDFFESKNHLVIESKSLIPVNDPSLLWINSGVATLKNYFSGKKVPPAFRLTNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK +R ND++NVG T+RHHTFFEMLGNFS G YFK+ AI A + L ++D + Sbjct: 67 QKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAYAKEFLVNVLEMDFEK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY T Y+ED EA W + +G+ +I T + NFW + +GPCGPC+EIF+D+GE Sbjct: 123 LYFTYYEEDLEAKNYWLE-NGVDESHLISGTRDTNFWDLG-SGPCGPCTEIFYDRGEKYD 180 Query: 185 G---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 L + E +RYIEIWN+VF QF + L + +IDTG GLER+A+++Q+ Sbjct: 181 SRGIDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYTELKQKNIDTGAGLERLASIMQDVP 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSSFLIADGI 290 NYD DLF ++I+ E+ + KY N N ++I DH+R+ IADG Sbjct: 241 TNYDSDLFINIIREIEKYSRYKYIIENYFVKDEHQSEINTNFKIIADHIRTVVNAIADGA 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +N GRGY++RR++RR+ LG + + L+ + + Y E K +I + Sbjct: 301 KVSNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVKVVKDSLPYEYDE----KDVI-DA 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ F KT+++G +LL+ L + ++++ +G VAF L +T+G P+++ +IL +G+ Sbjct: 356 IKEEELLFSKTIEKGKILLESFLDN--ENKVFDGAVAFNLLETYGFPIELTAEILHQKGI 413 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFM 469 +D+ +F A E+ A A G +G + I +L +K F+GY L S Sbjct: 414 R-VDMEAFELAKEKH---ALASKGGKATGMDKVINSLALIDK-KMDNFVGYSELSAS--- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S ++K ++ E+ G V+ + TPFYA +GGQ Sbjct: 466 -------------------SKVLKLFDEENEVESFETGGY---VLLETTPFYATSGGQRH 503 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G I +++I DV K G +H G + + +D R L NHS Sbjct: 504 DKGFIIQGENKIKIIDVFKDKFGNHIHFV---EGKMNNYEPVSSFVDPNIRIGLERNHSG 560 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL +LGSH+ Q GS + L FD + + ++K+IED V I +++ Sbjct: 561 THLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAIEDLVRSYITKSIDR 620 Query: 650 VTRIMNREDAIASGAAALL--GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 + A GA L G + R VRVV G +S LCGGTH+S+T ++ Sbjct: 621 EYITTTVDKAREMGAIMTLEEGEYMDPRAVRVVRF-----GDITSDLCGGTHLSNTSKLE 675 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQ-----DEKLKSLASFLKVSQGNVVG--- 758 I + +AG+ RI AI+ + + + + +E+L ++ +K + + V Sbjct: 676 SFKITNVEKKQAGVFRIRAISSIKLVNEYLSEVNKKLNEELATIIKKIKELKNDYVAPVI 735 Query: 759 ----------------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802 R++E+ E Y+ QL+ L+ + E + KI N+ +I Sbjct: 736 NENEPDIETLNLSINKRIDELREVYK--QLLKESSNLEFDYETVKFDKIN--NYDVYINL 791 Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862 +VD+ +K + +++ K QSG + + SK +K +L + T A+D ++ K+ Sbjct: 792 DVDASSVKLIAASIRDKFQSGKTVAIIGSKNEKELLLAIATR-------AIDANKMFKKL 844 Query: 863 LG--GGGGGGRPHMA 875 G GGG P +A Sbjct: 845 SSELNGRGGGAPILA 859 >gi|323331402|gb|EGA72819.1| Ala1p [Saccharomyces cerevisiae AWRI796] Length = 648 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/664 (36%), Positives = 360/664 (54%), Gaps = 62/664 (9%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT- 62 +++R TFL++F+ H+ + SS ++P +DPTL+F N+GM +K IF G P T Sbjct: 11 ATNVRNTFLDYFKSKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTL 70 Query: 63 ----TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEF 118 QKC+RAGGKHNDL++VG+ + HHTFFEMLGN+SFG YFK+ AI +W LLT+ + Sbjct: 71 KRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVY 130 Query: 119 DLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCG 170 + + RLY+T ++ DE EA +LWK + G+ D I+ DNFW M + GPCG Sbjct: 131 GIPKDRLYVTYFEGDEKLGLEPDTEARELWKNV-GVPDDHILPGNAKDNFWEMGDQGPCG 189 Query: 171 PCSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCSEI +D+ GG +S + +E+WNLVF+QF ++ LP IDTG Sbjct: 190 PCSEIHYDR----IGGRNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTG 245 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMK-YEGNNIVN--------HRVIVDH 278 MG ER+ +VLQ+ +NYD D+F L + +++T ++ Y GN N +RV+ DH Sbjct: 246 MGFERLVSVLQDVRSNYDTDVFTPLFERIQEITSVRPYSGNFGENDKDGIDTAYRVLADH 305 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYT-EPLMMHLLPALCTEMGSA 336 +R+ +F +ADG +P NEGRGYVLRRI+RR YAR + Y L P L +++ Sbjct: 306 VRTLTFALADGGVPNNEGRGYVLRRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDI 365 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGDVAFKLYDTH 394 +PEL + + E L E+ F KTLDRG L + S K E L+G ++LYDT+ Sbjct: 366 FPELAKDPAFLFEILDEEEASFAKTLDRGERLFEKYASAASKTESKTLDGKQVWRLYDTY 425 Query: 395 GLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGA 454 G P+D+ + + +GL ID F +A +E A G ++ I ++ E Sbjct: 426 GFPVDLTELMAEEQGLK-IDGPGFEKAKQES---YEASKRGGKKDQSDLIKLNVHE---- 477 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE---IVEEAV-SGQK 510 + E K + G +++ I++ + V+E G+K Sbjct: 478 --------------LSELNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITEPGKK 523 Query: 511 VEVVFDQTPFYAEAGGQLGDTG-CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEM 569 ++ D+T FYAE GGQ DTG I D + +VQ G H +E G L Sbjct: 524 YGIILDKTCFYAEQGGQEYDTGKIVIDDAAEFNVENVQ-LYNGFVFHTGSLEEGKLSVGD 582 Query: 570 SLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITS 629 ++ + D R + NH+ TH+L+ AL LG+ V Q GS + P+ LRFD +H K +++ Sbjct: 583 KIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFSHKKAVSN 642 Query: 630 AELK 633 ELK Sbjct: 643 EELK 646 >gi|221057404|ref|XP_002261210.1| alanine--tRNA ligase [Plasmodium knowlesi strain H] gi|194247215|emb|CAQ40615.1| alanine--tRNA ligase, putative [Plasmodium knowlesi strain H] Length = 1180 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 271/810 (33%), Positives = 425/810 (52%), Gaps = 107/810 (13%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R F+ +F++ H ++ S+S+IP ND TL+FTN+GM FK IF GQ + +A Sbjct: 196 VRGRFINYFKEKKHTVMESASVIPYNDNTLLFTNAGMNQFKKIFLGQVDKNSDLGKLKRA 255 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE +I AWDLLT + + Sbjct: 256 VDT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIDYAWDLLTNVYKI 314 Query: 121 DQRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 D RLY+T + ED EA ++W K L +I+ +NFW MAETGPCGP Sbjct: 315 DPNRLYVTYFGGDEKLPGCPEDFEAKRIWLKY--LDESRILPFGMKENFWEMAETGPCGP 372 Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ GG SS + +EIWN+VFMQ+ + K+ LP IDTGM Sbjct: 373 CSEIHYDR----IGGRDASSLVNMDDPSVLEIWNIVFMQYNKDEKKNMNKLPFPCIDTGM 428 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN----------HRVIVDH 278 GLER+ ++LQ +NYD DLF + + +++ E VN +RV+ DH Sbjct: 429 GLERITSILQNVESNYDTDLFMPIFKQIKEIFNHLPEYGGKVNEEDVGRIDYAYRVVSDH 488 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM---HLLPALCTEMGS 335 +R + I+DG LP NEGR YV+RRI+RRA+ + + E ++ L+ ++C + Sbjct: 489 IRCVTIAISDGCLPGNEGRNYVIRRIIRRAIRVGKQIFQVESNVLWFYKLVDSVCQILKK 548 Query: 336 AYPELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVL---SHLGKDEILNGDVAFKL 390 + +L + I+ ++ E+ F KTL++G+ + ++ ++ G D+I NG AF L Sbjct: 549 CFTDLQDENRVNYIKSIIKQEEMVFNKTLEKGVDQFNKIIKKSNNAGGDKIFNGKDAFDL 608 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG---TTEKIWFS 447 Y ++G P+D++Q I+C +++ FN+ ++ + + ++ + EK Sbjct: 609 YTSYGFPIDLIQ-IMCEEKNFKLNMFEFNELFKKHQLVSDTNNFKINKFFDLPVEKA-HE 666 Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAV- 506 LKEK+G + ++ +DR+ D+ ++IV ++ GE +++ Sbjct: 667 LKEKHGVEATEDH---HKYEWNNDDRRN-------DMKKVDTNIV--VIYDGENFIDSIK 714 Query: 507 ---SGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563 +K ++ +T FY E GGQ+ DTG ++ Q+ +VQK + + +H I++ G Sbjct: 715 TPNDDKKYALILKETNFYYENGGQIYDTGVIENGQMKFQVLNVQKMNDYV-LHIGILKEG 773 Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV------------------ 605 + S+ +++ R+ ++ NH+ATHLL+ + +L +V Sbjct: 774 KIEKNDSVHTYVNFDRRKLVACNHTATHLLNFVIKKVLTEYVVNGEGQMKNGDLVQKKNE 833 Query: 606 ------------SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 Q GS + + LRFD + + I+ + IE VND+I Q L V R Sbjct: 834 KEETGMNSIFNCDQKGSLVDDEKLRFDFSFFQNISDDLVSKIESQVNDLIKQELSVSVRT 893 Query: 654 MN-REDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSS 701 M+ +E G A+ Y D V VV ++ + + S LCGGTH+++ Sbjct: 894 MDLKESKKIKGIRAIFEEDYADVVNVVFIDNDVDKILNHLDVNYSYMCSIELCGGTHIAN 953 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 T I I SE SI GI RI A+T ++A Sbjct: 954 TKFIKKFIITSEESIGKGIYRINAVTNRKA 983 >gi|71895377|ref|NP_001026227.1| probable alanyl-tRNA synthetase, mitochondrial [Gallus gallus] gi|53136426|emb|CAG32542.1| hypothetical protein RCJMB04_28n18 [Gallus gallus] Length = 816 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 278/771 (36%), Positives = 400/771 (51%), Gaps = 62/771 (8%) Query: 7 IRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----A 60 IR FL FF+ K+GH LPS+ + P DPTL+F NSGM FK +F G P + Sbjct: 34 IRAAFLRFFEEKHGHRCLPSAPVRPRGDPTLLFVNSGMNQFKPVFLGTAHPRSELAQQRR 93 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V QKCVRAGGKHNDL++VGR HHTFFEMLGN+SFG YFKE A +AW+LLT+ + + Sbjct: 94 VVNSQKCVRAGGKHNDLEDVGRDTYHHTFFEMLGNWSFGDYFKEEACSMAWELLTEVYKI 153 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY+T + + DEE +W + G+ A+ ++ DNFW M +TGPCGPC Sbjct: 154 PKDRLYVTYFGGDSSLGLNADEECRDVWLSL-GVPANHVLPFPMKDNFWEMGDTGPCGPC 212 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +EI +D + GG S+ + +EIWNLVFMQ+ ++ LP+ +DTGMG Sbjct: 213 TEIHYDH---VGGGRNASALVNQGSPDVVEIWNLVFMQYSREVDGNLLPLPQHHVDTGMG 269 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQ-VTGMKYE---GNNIVNH-----RVIVDHLR 280 LER+ TVLQ K +NYD DLF ++ A + G +Y+ GN V H RV+ DH+R Sbjct: 270 LERLVTVLQNKRSNYDTDLFTPILDAIHKGCGGPRYQGLVGNADVGHVDMAYRVVADHVR 329 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCY-ARLLGYTEPLMMHLLPALCTEMGSAYPE 339 + I DGI P G VLRRI+RRA+ + A +L L+ L+PA+ +G AYPE Sbjct: 330 TLCVCITDGIYPGLSGAELVLRRILRRAVRFCAEVLHAPRGLLASLVPAVVEVLGDAYPE 389 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLD 399 L + + + + F +L+RG +++ + + +VA+ LY G PLD Sbjct: 390 LKKNADQVMDIFNENEVAFLSSLERGRRIIERTVQQMKPSADFPAEVAWSLYGNLGFPLD 449 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLG---SGTTEKIWFSLKEKYGATQ 456 ++ +L +G+ +D +FN+ + E R +AH G GT + + + Q Sbjct: 450 LIDLMLEEKGIR-LDSAAFNELVLEDAKR-KAHGPQEGRQLEGTVVHL-----DVHSMAQ 502 Query: 457 FIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 ++ K K L Q + + ++I+ Q + +E +GQ V+ D Sbjct: 503 LQRDNIPATDDSPKYSYK-LGQHGQYEFSPCQATILMLYRDQ-SLQKEVGAGQHCGVILD 560 Query: 517 QTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGI-----FVHHAIVERGILRTEMSL 571 +T FYAE GGQ D G IRL D+ E + +V H + LR + Sbjct: 561 RTNFYAEQGGQASDRGYL----IRLGQQDILFPVESVRLCGGYVIHEVTAVETLRAGDQV 616 Query: 572 VLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAE 631 L +D R NH+ATHLL+ AL +LG Q GS +T + LRFD P+T + Sbjct: 617 QLFVDEVQRLACMTNHTATHLLNFALRHVLGDSTEQRGSHVTAEQLRFDFNIKGPVTVEQ 676 Query: 632 LKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSS 691 L+ +E V D+I +N V + A L Y D VR+VS+ V +S Sbjct: 677 LQQVEQVVQDVIKRNEAVYMAEVPLALARRVQGLRALDEGYPDPVRIVSLGVPVETVLTS 736 Query: 692 ----------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 LC GTH+ TG + L IVSE + GI R+ A+TG++A+ Sbjct: 737 NSQAAMQTSVELCCGTHLLQTGAMEDLAIVSERQLVKGISRVIAVTGRQAK 787 >gi|39938791|ref|NP_950557.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-M] gi|81565108|sp|Q6YQR8|SYA_ONYPE RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|39721900|dbj|BAD04390.1| alanyl-tRNA synthetase [Onion yellows phytoplasma OY-M] Length = 864 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 294/941 (31%), Positives = 466/941 (49%), Gaps = 134/941 (14%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +L+FF H + SSSLIP N+ L++ N+G+ P K F G + P ++ +T VQK Sbjct: 6 IRQMWLKFFASKNHHIAKSSSLIPRNEANLLWVNAGITPLKKYFDGTQTPPFRRITNVQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R ND+ NVG+T+RHHTFFEMLGNFS G YFK+ AI A++LLT K F + Sbjct: 66 CIRT----NDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFAFPLEK 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LYIT + +D++ ++ W + G+ + +I + + NFW + GP GPC+EIFFD+G+ Sbjct: 122 LYITYFFQDQDTYQYWLDL-GVEKNHLIPLKS--NFWQIG-PGPSGPCTEIFFDRGKTFD 177 Query: 185 GGLPGSSE------EGERYIEIWNLVFMQFEQQNKQ--ERFI-LPKMSIDTGMGLERMAT 235 P + E E +R+IEIWN+VF Q+ K E++ LP +IDTG GLER+A Sbjct: 178 ---PRNKELIIQDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERLAC 234 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 +LQ N++ DLF LI+A E++T +KY G + ++I DHL++ F I DG + NE Sbjct: 235 ILQNTKTNFETDLFFPLIKALEKMTQIKYTGQE--SFKIIADHLKTLVFAINDGAVLTNE 292 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 RGYVL++++RRA + LG +P + L+P M Y EL + +I + L ++ Sbjct: 293 KRGYVLKKLLRRAANEGKKLGLDKPFLHQLVPPTAAMMKDFYKELCTNQEIIAKVLLQQE 352 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F +TL L HL ++ L+G FKLYDT+G+P D++ D + + D Sbjct: 353 NIFEQTLKTA---EKTFLQHLTQN-TLSGQNFFKLYDTYGIPEDLILDYAKKKNIT-TDY 407 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEK-----YGATQFIGYDLLRGSKFMK 470 F + L + ++ ++ + T +I + +E+ ++FIGY Sbjct: 408 QKFQELLHDHQNLSKQNQ-------TSQIHMNKQEESFLQFLTPSEFIGY---------- 450 Query: 471 EDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGD 530 C+ + ++K + +G +V ++TPFYA GGQ+ D Sbjct: 451 --TNFTCK----------TKVIK-VFDKG-------------IVLEKTPFYANMGGQIED 484 Query: 531 TGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSAT 590 G D + +T + K G +H +G + I+ R Q+S +H+AT Sbjct: 485 EGWI--DNTK--VTKITKLPNGQILHEV---QGNFCEGQEVYACIEKTKRNQISYHHTAT 537 Query: 591 HLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVV 650 HLL L LGSH+ + GS + LR+D H + IT L IE VN +I +++PV Sbjct: 538 HLLEAVLQKQLGSHLKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKSVPVK 597 Query: 651 TRIMNREDAIASGAAAL---LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIML 707 ++ DA A L KY D+VR+VS++ S LCGGTH ++T ++ Sbjct: 598 IEQLSIPDAQKKYATLLEQNQKAKYKDKVRIVSID-----TFSVDLCGGTHATNTKDLEH 652 Query: 708 LYIVSESSIRAGIRRIEAITGQRARSHLMGQ-----------DEKLKSLAS--------- 747 I+S SI +GI RIEA+ + L + +K KSL + Sbjct: 653 FTILSCESISSGIYRIEAVCNNNCQESLNAKLVPYQNDLHQLTQKAKSLQTQNLIFDVKN 712 Query: 748 FLKVSQG--NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS--- 802 F ++Q +++ + I + + L L K+ L+ + +++ A+ NF+ I+ Sbjct: 713 FPPITQSYQDILNYQKHIKAQQQALVLFE-KKVLEYHQKNMVQ---AESNFLPPQITKKM 768 Query: 803 ------EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLA 856 E + LK M+ + K ++ L + EK ++ + L N + Sbjct: 769 MLTIEEEKPLEVLKFFMNHIFDKYHLEVLFLSYVQPEK---IVFLCKSKTLHAGNLIK-- 823 Query: 857 RLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLK 897 A L G GGG +AQ G +Q + V + L+ Sbjct: 824 --EAVSLVCGSGGGNASLAQGGTKKTKNLEQVLNFVKTKLE 862 >gi|66475244|ref|XP_627438.1| alanyl-tRNA synthetase (with HxxxH domain) [Cryptosporidium parvum Iowa II] gi|46229265|gb|EAK90114.1| alanyl-tRNA synthetase (with HxxxH domain) [Cryptosporidium parvum Iowa II] Length = 1003 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 287/794 (36%), Positives = 429/794 (54%), Gaps = 93/794 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ-----AV 61 +R F+++F+ H SS +IP NDPT++F N+GM FK+IF G +P + V Sbjct: 26 VRRQFVKYFEGLDHTFYRSSPVIPLNDPTILFINAGMNQFKSIFLGTVEPNSELSKLVRV 85 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLG++SFG YFKE AI+ A+ LLT+ + + Sbjct: 86 ANSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKEEAIEWAFKLLTQVYGIP 145 Query: 122 QRRLYITVY---------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY T + DEEA ++W K L D+I+ + +NFW MA+TGPCGPC Sbjct: 146 KDRLYATYFGGDPKLPSCPPDEEAKRIWLKY--LPEDRILSCGSKENFWEMADTGPCGPC 203 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI +D+ GG S ++ IEIWNLVFMQ+ ++ LPK +DTGMG Sbjct: 204 SEIHYDR----IGGRDAISLVNKDDPDVIEIWNLVFMQYYREVDSTLTPLPKKCVDTGMG 259 Query: 230 LERMATVLQEKTNNYDIDLFK------HLIQASEQVTGMKYEGN--NI-------VNHRV 274 LER+ ++LQ KT+NYDIDLFK H + +S V +Y G +I +++RV Sbjct: 260 LERLVSILQNKTSNYDIDLFKPIFDQIHQVISSSGVQIPRYSGKVGDIDDPEMIDMSYRV 319 Query: 275 IVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYA----RLLGYTEPLMMHLLPALC 330 I DH+R+ + IADG +P+NEGRGYVLRRI+RRA+ Y + EP L+ ++ Sbjct: 320 ISDHIRTLTIAIADGCIPSNEGRGYVLRRILRRAIRYGSQYLKAGSNGEPWFYKLVDSVS 379 Query: 331 TEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE---------I 381 MG+ Y E+ + +I+E + E+++F KTL +G + V++ L + + Sbjct: 380 NIMGNYYKEIPENIQIIKEVILDEEKQFSKTLFKGTERFNKVINKLKSSQNNQQDQNKKL 439 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTT 441 AF+LY T+G P+D+ + + +G D F +E H L G Sbjct: 440 FPASEAFQLYSTYGFPMDLTELMANEQGF-DFDRQGFQLCMEN-------HHLA-SEGKN 490 Query: 442 EKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEI 501 K + L K I +LL + D + Q + + S+++ AI ++ Sbjct: 491 NKSFDDLILKPD----IQNNLLLEFGLKETDDQYKYQS-QTQIKDFYSNLI-AIFDGNQL 544 Query: 502 VEEA-VSGQKVEVVFDQTPFYAEAGGQLGDTG-----CAIGDGIRL-QITDVQKKAEGIF 554 + + G+ + ++FD+T FY+E+GGQ+ DTG D + + Q+ D KK Sbjct: 545 LNATEIQGKVIGLIFDKTTFYSESGGQVADTGFIDFQYNNNDEVSIFQVIDC-KKFGNYV 603 Query: 555 VHHAIVERGILR--TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612 +H I+ +G + E+ ++++DY R + NH+ TH+L+ AL ILGS Q GS + Sbjct: 604 LHIGILLQGKIEISPELKSLMSVDYSRRNLIKKNHTGTHILNFALRQILGSTCDQRGSVV 663 Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIAS---GAAALLG 669 P+ LRFD + KP+T +++ IE +N II + V + + E +IA A+ G Sbjct: 664 DPNKLRFDFSSQKPLTLDQIEEIEKMINQIIQEKQTVYCQTV--ELSIAKQIPNIRAIFG 721 Query: 670 TKYNDRVRVVSV------------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIR 717 Y D VRV+SV + D S CGGTHV +T EI+ I+SE I Sbjct: 722 ETYPDPVRVLSVSKSVDSLINSQTDNNDQEKVSIEFCGGTHVENTSEIISFSIISEEGIA 781 Query: 718 AGIRRIEAITGQRA 731 GIRRI A+T ++ Sbjct: 782 KGIRRIVAVTDNQS 795 >gi|303388536|ref|XP_003072502.1| alanyl-tRNA synthethase [Encephalitozoon intestinalis ATCC 50506] gi|303301642|gb|ADM11142.1| alanyl-tRNA synthethase [Encephalitozoon intestinalis ATCC 50506] Length = 864 Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust. Identities = 273/798 (34%), Positives = 434/798 (54%), Gaps = 84/798 (10%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M +R +FL++F H+++ SSS+IP D +L+FTNSGMV FK G+ + +A Sbjct: 2 MWTTEKLRRSFLDYFASKSHKIVSSSSVIPFEDDSLLFTNSGMVQFKKNLLGERDDLRRA 61 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 + VQ+C+RAGGKHNDLD+VG+ HHT+FEM+GN+SFG YFKE AI AW+ L L Sbjct: 62 CS-VQRCIRAGGKHNDLDDVGKDTYHHTYFEMMGNWSFGDYFKEEAIGFAWEFLVDVLKL 120 Query: 121 DQRRLYITVYDE-DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 ++ +LY+T Y+E D+E+ +W K L +++++ + DNFW M +TGPCGPC+EI +D+ Sbjct: 121 NKDKLYVTYYEELDKESGNIWLKY--LPSERVLSASYKDNFWEMGDTGPCGPCTEIHYDR 178 Query: 180 GECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILP--KMSIDTGMGLERMA 234 G S +++ IEIWN+VF+++ N+ ++P + IDTG+GLER+ Sbjct: 179 ----IGNRDASELVNKDDPNVIEIWNIVFIEY---NRTISGLVPLERKCIDTGIGLERLL 231 Query: 235 TVLQEKTNNYDIDLFKHLIQASEQVTGMKY---EGNNIVNHRVIVDHLRSSSFLIADGIL 291 ++L + +NY ID F +I+A E KY E + V RV+ DH R+ + D + Sbjct: 232 SILIDVRSNYLIDSFAVIIKAIEDRCNFKYNDTEESIDVAFRVVADHCRTIAVCTYDKVD 291 Query: 292 PANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +N+G GYVLRRI+RRA+ YA +LG E ++ L+ +G I+ K + + Sbjct: 292 FSNDGVGYVLRRILRRAVRYAHEVLGLKEGVLGELVGIAAHAIG------IELKSV--DC 343 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + E+ +F KTL +G+ + + GK ++G+ F LYDT+G P+D+ + + R + Sbjct: 344 VNKEELQFMKTLKKGIERFHKLAENNGK---ISGEDLFLLYDTYGFPVDLTEIMAKERNI 400 Query: 411 AGIDII---SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 ID SF Q E ++ L + +G SK Sbjct: 401 K-IDYTNFESFKQKAVEISKMSKGMKLNIDAGLQ------------------------SK 435 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 F + D K I+ T K I+ + + E G+++ +VFD+T FYAE GGQ Sbjct: 436 FPRTDDSFKYTKNSINATFFFGIEGKEIITKPNEIPE---GRELGLVFDKTCFYAECGGQ 492 Query: 528 LGDTGCAI-GDGIR----LQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQ 582 +GDTG I DG + + D Q +G VH I+E + + D + R++ Sbjct: 493 VGDTGKIIFYDGEKDVGVFNVMDTQ-AIKGFVVHKGILEGSASYQALQMY---DQELRKK 548 Query: 583 LSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDI 642 + NH+ THLL+ L TI+ Q GS + P+ LRFD + +T+ EL+ +E VN+ Sbjct: 549 IMKNHTGTHLLNFFLRTII--QTEQRGSLVDPEKLRFDF-EGRKLTNQELEEVEKKVNEF 605 Query: 643 IAQNLPVVTRIMNREDAIAS-GAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 I N V ++RE A+ S + +Y ++VRV++++ G+ +CGGTHV++ Sbjct: 606 IQSNTDVEAITLDREQAMESPNIVRMRNEEYPEKVRVITMKA--NGLTIEEMCGGTHVTN 663 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 +I I+SE+ + A RRI A+TG++A Q+ +++ K+S G VV + Sbjct: 664 VSDIGKFRIISETGVSANTRRIVAVTGKKA------QELDMEAEIYLSKLSIGEVVNVDK 717 Query: 762 EIWEEYR-KLQLIHAKRK 778 I YR K+++++ K K Sbjct: 718 TIPLFYRQKVEVLNQKNK 735 >gi|194246643|ref|YP_002004282.1| alanyl-tRNA synthetase [Candidatus Phytoplasma mali] gi|193807000|emb|CAP18435.1| Alanyl-tRNA synthetase [Candidatus Phytoplasma mali] Length = 861 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 246/740 (33%), Positives = 396/740 (53%), Gaps = 85/740 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 I+ +L FF GH S SLIP NDPTL++ N+G+ P K F G V + +QK Sbjct: 6 IKNMWLNFFINKGHYQENSFSLIPENDPTLLWVNAGITPLKKYFNGSLPVVNSRIVNIQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDLDQRR 124 C+R ND++NVG+T+ HHTFFEMLGNFS G YFK+ AI A++LL + F D + Sbjct: 66 CLRT----NDIENVGKTSTHHTFFEMLGNFSIGNYFKKEAIDFAYELLMSKQWFGFDSNK 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG---- 180 +YIT Y +D E LW K + + +I + +N FW++ + GPCGPC+EIFFD+G Sbjct: 122 IYITYYYKDIETLNLWLK-KDIHPEHLISLESN--FWNIGQ-GPCGPCTEIFFDRGSKYH 177 Query: 181 ----ECIPGGLPGSSEEGERYIEIWNLVFMQ--FEQQNKQERFI-LPKMSIDTGMGLERM 233 E I +P + R++EIWN+VF Q F +NK+ + LP +IDTG GLER+ Sbjct: 178 PKGKELIKKDIPNN-----RFVEIWNIVFSQYNFNPENKKNIYQELPSKNIDTGAGLERL 232 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A +LQ+ NN++ D+F +IQ ++ +KY+ +VI DH+R+ F I DG++ A Sbjct: 233 ACILQDVENNFETDIFFPIIQKISYLSSIKYQNQEAF--KVISDHIRTLVFAIGDGVIFA 290 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 N+GRGYVL++I+RRA+ ++L + +P + L+P + + YP+L + + ++E+ + Sbjct: 291 NDGRGYVLKKILRRAIQKGKILNFKKPFLYKLIPIVVKQNQFFYPKLKEYQSILEKIIYK 350 Query: 354 EDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 E+++F L+ + + +L K+ L+G+ FKLYDT+G+P +I+ + +G I Sbjct: 351 EEKKFFDMLEN----CEEKILNLIKNNFLSGEQYFKLYDTYGIPKEIILNYCEQKGFI-I 405 Query: 414 DIISFNQALEEQRSRARAHS-LGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKED 472 D F + LE ++ ++ + L + + K+K + FIGY++L Sbjct: 406 DNDGFIKKLESHKNLSKLNQHFKLSIQKKNDKFLNFKDK---SNFIGYNILETK------ 456 Query: 473 RKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG 532 + ++K I EE ++ ++TPFY GGQ+ D G Sbjct: 457 ----------------TKVIK-------IFEEG-------IILEKTPFYPNMGGQINDKG 486 Query: 533 CAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHL 592 + + + + G +H V+ + + ++ ID+ R+Q+S++H+ATHL Sbjct: 487 FINN----IPVKKIIRLHHGQLLHQ--VQSDLFYEDQEVIAKIDFNARKQISLHHTATHL 540 Query: 593 LHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTR 652 L A+ ILG H+ Q GS I + LR+D H + I ++ E VN I + V+ + Sbjct: 541 LQDAIILILGKHIEQKGSFIGDNLLRWDFNHYEKIKPQDILKFEIQVNKWIQKKTNVIIK 600 Query: 653 IMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + DA KY + VR+V ++ +S LC GTH +T ++ + I+ Sbjct: 601 EILFSDAKKIPNIKYFKDKKYPEIVRIVQMD-----DYSITLCAGTHAKNTKDLKKIIIL 655 Query: 712 SESSIRAGIRRIEAITGQRA 731 S + I +GI RIEA G A Sbjct: 656 SCNLISSGIYRIEASVGLNA 675 >gi|255520943|ref|ZP_05388180.1| alanyl-tRNA synthetase [Listeria monocytogenes FSL J1-175] Length = 523 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 232/552 (42%), Positives = 326/552 (59%), Gaps = 59/552 (10%) Query: 1 MSNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVY 58 M +SS +R FL+FF++ GH + PS+ L+P NDPT+++ NSG+ K F G P Sbjct: 1 MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSGVATMKKYFDGSVIPDN 60 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--K 116 + QK +R ND++NVG+T RHHTFFEMLGNFS G YFKE AI AW+ LT K Sbjct: 61 PRMANAQKSIRT----NDIENVGKTARHHTFFEMLGNFSIGDYFKEGAIVFAWEFLTSPK 116 Query: 117 EFDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIF 176 D +LY+TVY EDEEA LW++ GLS D I+ I DNFW + GP GP SEIF Sbjct: 117 WIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEI--EDNFWDIG-IGPSGPDSEIF 173 Query: 177 FDQG----------ECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 +D+G E PGG E ERY+EIWNLVF QF LPK +IDT Sbjct: 174 YDRGPAFGDDASDPELYPGG------ENERYLEIWNLVFSQFNHNPDGTYTPLPKQNIDT 227 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSF 284 GMGLERM +++Q+ N++ DLF +I+ EQ+ G+KY N V +VI DH+R+ +F Sbjct: 228 GMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFKVIADHIRTVAF 287 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 I DG LP+NEGRGY+LRR++RRA+ YA++L EP M L+P + M S YPE+ Sbjct: 288 AIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGKIMNSFYPEVENQT 347 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVL--SHLGKDEILNGDVAFKLYDTHGLPLDIMQ 402 I++ +R+E+ERF +TL+ GL +L+ +L + ++I+ G FKLYDT G P+++ + Sbjct: 348 DFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADIFKLYDTFGFPVELTE 407 Query: 403 DILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTE-KIWFSLKEKYGATQFIGYD 461 + GL +D F ++EQR RAR+ + S + ++ +L EK + F+GY Sbjct: 408 EYAEDHGLK-VDHAGFEAEMKEQRDRARSARADVKSMQVQGELLANLTEK---SAFVGY- 462 Query: 462 LLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFY 521 + T VS I+ ++Q +VEE +G + +V+F +TPFY Sbjct: 463 ---------------------NSTEHVSEIL-YLIQDDTLVEEVAAGSEAQVIFKETPFY 500 Query: 522 AEAGGQLGDTGC 533 AE+GGQ+ D G Sbjct: 501 AESGGQVADKGT 512 >gi|85057696|ref|YP_456612.1| alanyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma AYWB] gi|123518184|sp|Q2NJ60|SYA_AYWBP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|84789801|gb|ABC65533.1| alanyl-tRNA synthetase [Aster yellows witches'-broom phytoplasma AYWB] Length = 864 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 253/744 (34%), Positives = 390/744 (52%), Gaps = 84/744 (11%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 IR +++FF H + S SLIP N+ L++ N+G+ P K F G + P ++ +T VQK Sbjct: 6 IRQMWIKFFASKNHHIEKSFSLIPRNEDNLLWVNAGITPLKKYFDGTQTPSFRRITNVQK 65 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLT--KEFDLDQRR 124 C+R D+ NVG+T+RHHTFFEMLGNFS G YFK+ AI A++LLT K F + Sbjct: 66 CIRT----KDIKNVGKTSRHHTFFEMLGNFSIGNYFKKEAIHYAFELLTSPKWFGFPLEK 121 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LYIT + +D++ ++ W + G++ + +I + DNFW + GP GPC+EIFFD+G+ Sbjct: 122 LYITYFFQDQDTYQYWLDL-GVNKNHLIHL--KDNFWQIG-PGPSGPCTEIFFDRGKTFD 177 Query: 185 GGLPGSSE------EGERYIEIWNLVFMQFEQQNKQ--ERFI-LPKMSIDTGMGLERMAT 235 P + E E +R+IEIWN+VF Q+ K E++ LP +IDTG GLER+A Sbjct: 178 ---PRNKELIIEDLENDRFIEIWNIVFSQYNCDPKLPIEKYQELPSKNIDTGAGLERLAC 234 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPANE 295 +LQ N++ DLF LI+A E++T + Y G + ++I DHL++ F I DG + NE Sbjct: 235 ILQNTKTNFETDLFFPLIKALEKMTQITYTGQE--SFKIIADHLKTLVFAINDGAVLTNE 292 Query: 296 GRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSED 355 RGYVL++++RRA + LG +P + L+P M Y EL + +I + L ++ Sbjct: 293 KRGYVLKKLLRRAANEGKKLGLEKPFLYKLVPPTVAMMKDFYKELCTNQEMIAKVLLQQE 352 Query: 356 ERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDI 415 F KTL L HL ++ L+G FKLYDT+G+P +++ D + + D Sbjct: 353 NIFEKTLKTA---EKTFLQHLTQN-TLSGKNFFKLYDTYGIPENLILDYAKKKNIT-TDY 407 Query: 416 ISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKV 475 F + L EQ++ ++ + + ++ F ++FIGY Sbjct: 408 QKFQELLHEQQNLSKKNQTSQTNMNKQEEAFL--HFLTPSEFIGY--------------- 450 Query: 476 LCQKPPIDLTN-GVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCA 534 TN + V + +G +V ++TPFYA GGQ+ D G Sbjct: 451 ---------TNFACKTKVIKVFDEG-------------IVLEKTPFYANMGGQIEDEGWI 488 Query: 535 IGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLH 594 + ++T + K G +H +G + ID R+Q+S +H+ATHLL Sbjct: 489 DNN----KVTKITKLPNGQILHEF---KGNFCEGQEVYACIDKTKRKQISYHHTATHLLE 541 Query: 595 HALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIM 654 L LG+H+ + GS + LR+D H + IT L IE VN +I + +PV + Sbjct: 542 VVLQKQLGNHIKKQGSSVGFSSLRYDFNHFEKITPQTLLQIEKEVNQLIQKRVPVKIEQL 601 Query: 655 NREDAIASGAAAL---LGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIV 711 + +DA A L KY D+VR+V+++ S LCGGTH ++T ++ I+ Sbjct: 602 SIQDAQKKYATLLEQNQKAKYKDKVRIVNID-----TFSVDLCGGTHATNTKDLEHFTIL 656 Query: 712 SESSIRAGIRRIEAITGQRARSHL 735 S SI +GI RIEA+ + + L Sbjct: 657 SYESISSGIYRIEAVCNKNCQESL 680 >gi|258575517|ref|XP_002541940.1| alanyl-tRNA synthetase [Uncinocarpus reesii 1704] gi|237902206|gb|EEP76607.1| alanyl-tRNA synthetase [Uncinocarpus reesii 1704] Length = 931 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 274/782 (35%), Positives = 402/782 (51%), Gaps = 107/782 (13%) Query: 22 LLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTVQKCVRAGGKHND 76 L+PSSS++P +DPTL+F N+GM +K+IF G P + QKC+RAGGKHND Sbjct: 41 LVPSSSVVPLSDPTLLFANAGMNQYKSIFLGTVDPNSDFAHLKRAHNSQKCIRAGGKHND 100 Query: 77 LDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLYITVY------ 130 LD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +WDLLTK + L+ RLY+T + Sbjct: 101 LDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQYSWDLLTKVYGLEPDRLYVTYFEGNKDA 160 Query: 131 --DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLP 188 + D E LW + G+ D I+ DNFW M + GPCGPCSE+ +D+ GG Sbjct: 161 GIEPDLETKDLWLGV-GVKEDHILSGNMKDNFWEMGDQGPCGPCSEVHYDR----IGGRN 215 Query: 189 GS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYD 245 + + + +EIWN VF+Q+ +++++ LP +DTG+G ER+ +VLQ+K++NYD Sbjct: 216 AAHLVNMDDPNVLEIWNNVFIQYNRESEKILRPLPNKHVDTGLGYERLVSVLQDKSSNYD 275 Query: 246 IDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLIADGILPANEG 296 D+F L ++TG++ Y G + I +RV+ DH+R+ +F I+DG P NEG Sbjct: 276 TDVFSPLFDVIREITGVRPYAGKFGEEDVDGIDTAYRVVADHVRTLTFAISDGAAPNNEG 335 Query: 297 RGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDE 356 RGYV T+MG +PE+ + + + E L E+ Sbjct: 336 RGYV-----------------------------WTQMGDMFPEIKKKQTDVMEILDEEEI 366 Query: 357 RFGKTLDRGLVLLDGVLSHLGKDE---ILNGDVAFKLYDTHGLPLDIMQDILCARGLAGI 413 F KTLDRG + + + K+ L+G ++LYDT G P+D+ Q + RGL+ I Sbjct: 367 SFAKTLDRGERQFE-IYAQQAKESGSGKLHGADVWRLYDTFGFPVDLTQLMAEERGLS-I 424 Query: 414 DIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL--LRGSKFMKE 471 D N EE R +A+ S G ++ + ++ +DL L K Sbjct: 425 D----NTEFEEARLKAKEASKGQAKAASDLLKLTV-----------HDLGKLEKDNVPKT 469 Query: 472 DRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEA---VSGQKVEVVFDQTPFYAEAGGQL 528 D + + S + +I E V +G+++ ++ D+T FYAE GGQ Sbjct: 470 DDSAKFGR------GNIQSQILSIYHGKEFVASTNGISAGEQIGIILDKTNFYAEQGGQE 523 Query: 529 GDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRT---EMSLVLTIDYQNRRQLSI 585 D G I DG R FV +A R + + ++ L + R ++S Sbjct: 524 YDIGKIIVDGHRGVTFQFGVPFLRPFVFYAKQARQLPQATDGKLQERLLLTRPQRHEVSN 583 Query: 586 NHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQ 645 NH+ TH+L+ AL +LG+ + Q GS + + LRFD +H I+ ++L+ IE + I Q Sbjct: 584 NHTGTHILNFALREVLGNGIDQKGSLVAAEKLRFDFSHKSAISDSDLEKIEAKSTEYIRQ 643 Query: 646 NLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYE------------DGGVHSSA 692 N V ++ + A +G A+ G Y D VRVVSV E GV S Sbjct: 644 NCAVYSQDVPLAKAREITGVRAVFGETYPDPVRVVSVGVELDEILKDVKDPRWKGV-SIE 702 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVS 752 CGGTHV TG+I L I+ ES I GIRRI A+TG+ A E + L F K+ Sbjct: 703 FCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGKDAHEVQRIAREFGERLNKFEKME 762 Query: 753 QG 754 QG Sbjct: 763 QG 764 >gi|309800688|ref|ZP_07694829.1| alanyl-tRNA synthetase [Streptococcus infantis SK1302] gi|308115695|gb|EFO53230.1| alanyl-tRNA synthetase [Streptococcus infantis SK1302] Length = 730 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 275/773 (35%), Positives = 409/773 (52%), Gaps = 81/773 (10%) Query: 154 ITTNDNFWSMAETGPCGPCSEIFFDQGECIPG---GLPGSSE--EGERYIEIWNLVFMQF 208 I DNFW + GP GP +EIFFD+GE GL +E E +RYIEIWN+V QF Sbjct: 9 IPIEDNFWEIG-AGPSGPDTEIFFDRGEAFDPENIGLRLLAEDIENDRYIEIWNIVLSQF 67 Query: 209 EQQNKQERFI---LPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE 265 R LP +IDTG GLER+ V+Q N++ DLF +I+ E+++G Y+ Sbjct: 68 NADPAVPRSQYKELPHKNIDTGAGLERLVAVIQGAKTNFETDLFMPIIREVEKLSGKVYD 127 Query: 266 --GNNIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM 323 G+N+ + +VI DH+RS SF I DG LP NEGRGYVLRR++RRA + + LG EP + Sbjct: 128 QDGDNM-SFKVIADHIRSLSFAIGDGALPGNEGRGYVLRRLLRRASMHGQKLGINEPFLY 186 Query: 324 HLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGK--DEI 381 L+P + M S YPE+++ + IE+ ++SE+E F +TL G G+++ L + + Sbjct: 187 KLVPTVGKIMESYYPEVLEKRDFIEKIVKSEEESFARTLHSGQHFAQGIVADLKEKGQSV 246 Query: 382 LNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH-----SLGL 436 + G FKLYDT+G P+++ ++I G+ +D F A++EQ+ RARA S+G+ Sbjct: 247 IAGQDVFKLYDTYGFPVELTEEIAEEAGMT-VDREGFEAAMKEQQERARASAVKGGSMGM 305 Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496 + T + I Y A+Q S +V + Sbjct: 306 QNETLQNITVESVFNYNASQL------------------------------SSKLVAIVA 335 Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIG--DGIRLQITDVQKKAEGIF 554 E+ E VS ++F +TPFYAE GGQ+ D G + + +TDVQK G Sbjct: 336 DNAEV--ENVSEGTASLIFAETPFYAEMGGQVADHGQILDAQGNVVATVTDVQKAPNGQA 393 Query: 555 VHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITP 614 +H V L L ID R ++ NH+ATHLLH AL ILG H +Q GS Sbjct: 394 LHTVEV-LAPLALNQEYTLAIDSNRRHRVMKNHTATHLLHAALHNILGHHATQAGSLNEV 452 Query: 615 DGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYND 674 + LRFD TH + +T EL++IE VN+ I + + V T + + A GA AL G KY Sbjct: 453 EFLRFDFTHFQAVTPEELRAIEQQVNEKIWEAIAVKTVETDIDTAKEMGAMALFGEKYGK 512 Query: 675 RVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSH 734 VRVV++ G +S LCGGTHV +T EI L IV E I +G RRI A+TG+ A Sbjct: 513 EVRVVTI-----GDYSVELCGGTHVGNTSEIGLFKIVKEEGIGSGTRRILAVTGKEAFEA 567 Query: 735 LMGQDEKLKSLASFLKVSQ-GNVVGRVEEIWEEYRKLQLIHAKRKLQL----------NV 783 Q++ LK +A+ LK Q V +VE + E+ R+LQ +A+ K + NV Sbjct: 568 YREQEDALKEVAATLKAPQLKEVPHKVEGLQEQLRQLQKENAELKEKAAAAAAGDVFKNV 627 Query: 784 EDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 ++ + H+ +++ +S D+ L++ D ++K S +++LV +K ++ T Sbjct: 628 QEANGHR-----YIASQVSVSDAGALRTFADNWKQKDYSDVLVLVAAIGDKVNVLVASKT 682 Query: 844 EDLLDRFNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFL 896 +D+ +A ++ + A ++ G GGG+P MA +GG N K + + VA L Sbjct: 683 KDV----HAGNVIKELAPIV-DGRGGGKPDMAMAGGSNQAKIQELLDAVAGKL 730 >gi|148691494|gb|EDL23441.1| alanyl-tRNA synthetase like [Mus musculus] Length = 984 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 297/907 (32%), Positives = 462/907 (50%), Gaps = 139/907 (15%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 +++R FL FF+ ++GH L+PS+++ P DP+L+F N+GM FK IF G P + Sbjct: 35 AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117 + V QKCVRAGG+HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ Sbjct: 95 RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 154 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RL+++ + D D E +W + G+ A +++ +NFW M +TGPC Sbjct: 155 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 213 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI +D + GG+ GS + +E+WNLVFMQ ++ +LP+ +DTGMG Sbjct: 214 GPCTEIHYD----LAGGV-GSPQ----LVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 264 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280 LER+ VLQ K + YD DLF L+ A Q G EG +RV+ DH+R Sbjct: 265 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 324 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339 + S IADG+ P G VLRRI+RRA+ Y+ + P + L+P + +GSAYPE Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 384 Query: 340 LIQ--AKLLIE-ETLRSEDE-RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDT 393 L + K+LIE +L SEDE F +L RG ++D + LG ++ +VA+ L Sbjct: 385 LEKNSVKVLIEIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGN 444 Query: 394 HGLPLDIMQDILCARGL----AGIDIISFNQAL---------EEQRSRARAHSLG----L 436 G+PLD+++ +L +G+ AG++ ++ +A +E R H+L Sbjct: 445 LGIPLDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQ 504 Query: 437 GSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIV 496 G TT+ KY T D G LC+ + +++ Sbjct: 505 GIPTTDD-----SPKYNYTLHPNGDYEFG----------LCE----------ARVLQLYS 539 Query: 497 QQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFV 555 + G V +GQ+ ++ D+T FYAE GGQ D G + G + + V + G F+ Sbjct: 540 ETGTAVASVGAGQRCGLLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFI 599 Query: 556 HHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPD 615 H + L+ + L +D R + H+ATHLL AL LG Q GS + P+ Sbjct: 600 LHEAMAPERLQVGDQVQLYVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPE 659 Query: 616 GLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDR 675 LRFDV +T+ +L+++E V +++ Q+ PV E+ + A + G + D Sbjct: 660 RLRFDVATQTLLTTEQLRTVESYVQEVVGQDKPVFM-----EEVPLAHTARIPGLRSLDE 714 Query: 676 VRVVSVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIVSES 714 V Y D +H+S LC GTH+ STG + L I+ E Sbjct: 715 V------YPDPVRVVSVGVPVAHALGPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGER 768 Query: 715 SIRAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLI 773 + GI R+ AITG++A ++ +GQ + A+ ++SQG+ R L Sbjct: 769 QLVKGITRLLAITGEQAQQAREVGQSLSQEVEAASERLSQGS------------RDLPEA 816 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-VGISK 832 H +L ++ L+ ++A+ S +I + +EL++ + LQ++ + I L G + Sbjct: 817 H---RLSKDIGRLT--EVAE----SAVIPQWQRQELQTTLKMLQRRANTAIRKLEKGQAT 867 Query: 833 EKKASVL 839 EK +L Sbjct: 868 EKSQELL 874 >gi|258616275|ref|ZP_05714045.1| alanyl-tRNA synthetase [Enterococcus faecium DO] Length = 632 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 246/630 (39%), Positives = 366/630 (58%), Gaps = 53/630 (8%) Query: 158 DNFWSMAETGPCGPCSEIFFDQGECI-------PGGLPGSSEEGERYIEIWNLVFMQFEQ 210 DNFW + GPCGP +EIF+D+GE P PG E ERY+EIWNLVF +F Sbjct: 5 DNFWDIG-AGPCGPDTEIFYDRGEAYNDLAEDDPENYPGG--ENERYLEIWNLVFSEFNH 61 Query: 211 QNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTG-MKYEGNNI 269 + LP +IDTGMGLERM +++Q+ + N++ DLF +I A E+++ +KY N + Sbjct: 62 KPDNTFEPLPHKNIDTGMGLERMVSIVQDASTNFETDLFMPIIHAVEKLSKQVKYGENPV 121 Query: 270 --VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLP 327 ++++VI DH+R+ SF I DG LP+NEGRGYVLRR++RRA+ + + LG + + L+P Sbjct: 122 TDISYKVIADHIRALSFAIGDGALPSNEGRGYVLRRLLRRAVMHGKKLGIEQAFLYRLVP 181 Query: 328 ALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDE--ILNGD 385 + M S YPE++Q K IE+ +R+E+ERF +T++ GL +L+ V+ + + L G Sbjct: 182 VVGEIMVSYYPEVLQQKEFIEKVIRTEEERFNETINEGLEILNQVIQEVKNENGTTLAGK 241 Query: 386 VAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRAR-AHSLGLGSGTTEKI 444 FKLYDT+G P+++ +++ GL +D F + ++ QR RAR A S G + Sbjct: 242 DIFKLYDTYGFPVELTEEVAEDEGLK-VDHAGFEKEMDAQRERARSARSTEKSMGVQSAL 300 Query: 445 WFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEE 504 +K + ++FIGY + D ++L ++ +GE + Sbjct: 301 LTDIKVE---SKFIGY------TEQESDSQLL------------------VIVKGESLLN 333 Query: 505 AVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGD--GIRLQITDVQKKAEGIFVHHAIVER 562 V+ + +++FDQTPFYAE GGQ+ D G + + I +TDVQK G F+H V + Sbjct: 334 EVAEGEAQMIFDQTPFYAEMGGQVADQGWIMNEVGEIVAVVTDVQKAPNGQFMHTVEV-K 392 Query: 563 GILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVT 622 + + L ID R ++ NH+ATHLLH AL +LG H +Q GS + P LRFD T Sbjct: 393 APMSEGQTYHLLIDQSMRNRIIKNHTATHLLHKALKEVLGEHANQAGSLVAPGHLRFDFT 452 Query: 623 HSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVE 682 H ITS EL +E VN+ I + +PV T + + A GA AL G KY VRVV++ Sbjct: 453 HFGQITSDELAEMERIVNEKIWEAIPVETIETDIDTAKNMGAMALFGEKYGHDVRVVNI- 511 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKL 742 G S LCGGTHV++T I + IVSES I AG+RRIEA+T + A L ++++L Sbjct: 512 ----GGWSIELCGGTHVANTENIGIFKIVSESGIGAGVRRIEAVTSKEAYELLEEEEKQL 567 Query: 743 KSLASFLKVSQ-GNVVGRVEEIWEEYRKLQ 771 K +A+ +K Q VV + E++ ++ R+LQ Sbjct: 568 KQVATIVKSPQLKEVVSKAEQLQQQVRELQ 597 >gi|327304957|ref|XP_003237170.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892] gi|326460168|gb|EGD85621.1| alanyl-tRNA synthetase [Trichophyton rubrum CBS 118892] Length = 934 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 317/968 (32%), Positives = 477/968 (49%), Gaps = 135/968 (13%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTVQK 66 +R TFL++F+KNGH DP NS K QK Sbjct: 23 VRDTFLDYFEKNGHTF-------GTVDP-----NSDFAQLKRAHNS------------QK 58 Query: 67 CVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRRLY 126 C+RAGGKHNDLD+VG+ + HHTFFEMLGN+SFG YFK+ AIQ +W+LLTK + LD RLY Sbjct: 59 CIRAGGKHNDLDDVGKDSYHHTFFEMLGNWSFGDYFKKEAIQFSWELLTKVYGLDPDRLY 118 Query: 127 ITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFD 178 +T ++ +E EA +W+ + G+ D I+ DNFW M + GPCGPCSEI +D Sbjct: 119 VTYFEGNEAAGVGPDIEARDIWRSV-GVKDDHILTGDMKDNFWEMGDQGPCGPCSEIHYD 177 Query: 179 QGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 + GG + +++ +EIWN VF+Q+ ++ + LP +DTG+G ER+ + Sbjct: 178 R----IGGRNAAHLVNQDDPDVLEIWNNVFIQYNREPDRSLRPLPNQHVDTGLGYERLVS 233 Query: 236 VLQEKTNNYDIDLFKHLIQASEQVTGMK-YEG-------NNI-VNHRVIVDHLRSSSFLI 286 +LQ K++NYD D+F L A + +TG + Y G + I +RV+ DHLR+ +F I Sbjct: 234 ILQNKSSNYDTDVFTPLFTAIQNITGARPYTGKFGAEDADGIDTAYRVVADHLRTLTFAI 293 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTE--PLMMHLLPALCTEMGSAYPELIQAK 344 DG P NEGRGYV+RR++RR + YAR E L+PAL +MG +PE+ + + Sbjct: 294 TDGAAPNNEGRGYVVRRVLRRGVRYARKYLQVEIGSFFSKLVPALVEQMGDMFPEIRRKQ 353 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVL-----SHLGKDEILNGDVAFKLYDTHGLPLD 399 + E L E+ F KTLDRG + S GK L+G ++LYDT G P+D Sbjct: 354 TDVMEILDEEEVSFAKTLDRGERQFENYAQQALDSGAGK---LHGADVWRLYDTFGFPVD 410 Query: 400 IMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLK-----EKYGA 454 + + + R L ID F EE R +A+ S G ++ + ++ EK G Sbjct: 411 LTRLMAEERQLT-IDDAEF----EEARLKAKEASKGQAKTASDLLKLTVHTLSTLEKNGV 465 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVE---EAVSGQKV 511 + +KF K + + +KAI E+++ + + +++ Sbjct: 466 PK-----TDDDAKFGK---------------GNIVANIKAICHGKEVIDSTKDIPANEQI 505 Query: 512 EVVFDQTPFYAEAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMS 570 ++ D+T FYAE GGQ DTG + DG L + +VQ G +H ++ G S Sbjct: 506 GIILDKTNFYAEQGGQEYDTGKIVIDGQAELDVQNVQMYG-GYVLHTGFIKYGNFSVNDS 564 Query: 571 LVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSA 630 ++ D R + NH+ TH+L+ AL +LG V Q GS + + LRFD +H I+ + Sbjct: 565 VIAEYDELRRWPIRNNHTGTHILNFALREVLGDGVDQKGSLVAAEKLRFDFSHKSAISDS 624 Query: 631 ELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVEYEDGGVH 689 +L+ IE D I QN V ++ + A +G A+ G Y D VRVVSV E + Sbjct: 625 DLEKIEAKSTDYIRQNCAVYSQEVPLATAREITGVRAVFGETYPDPVRVVSVGVELDEIL 684 Query: 690 -----------SSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA------- 731 S CGGTHV TG+I L I+ ES I GIRRI A+TG+ A Sbjct: 685 KNVKDPRWEGVSIEFCGGTHVQKTGDIKDLVILEESGIAKGIRRIIAVTGEDAHEVQRIA 744 Query: 732 --------RSHLMG----QDEKLKSLASFLK------VSQGNVVGRVEEIWEEYRKLQLI 773 R M +D ++KSL L V + + +I ++ Q Sbjct: 745 REFGERLNRFEKMPASPERDAEIKSLQVDLNQLTISAVEKTKYRNQFTQIHKKITDAQKA 804 Query: 774 HAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQ--KKIQSGIIMLVGIS 831 K +++ ++ +S + + S +I + K++ ++L K SG + V + Sbjct: 805 AQKAEVKTAIDAISAYFEENTESPSLVIKLPITANQKAISESLNHVKTKLSGKALYVFAA 864 Query: 832 KEKKASVLIVVTEDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIA 890 K + VT DL + +A + A + ++GG GG P +A G NK D+A+ Sbjct: 865 DASKVAHGCYVTPDLTTKGASANEWASAVSSIVGGKAGGKAP-VAIGNGTEVNKVDEALD 923 Query: 891 GVASFLKK 898 +L+K Sbjct: 924 EATKYLEK 931 >gi|321466736|gb|EFX77730.1| hypothetical protein DAPPUDRAFT_54067 [Daphnia pulex] Length = 992 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 271/797 (34%), Positives = 396/797 (49%), Gaps = 75/797 (9%) Query: 2 SNVSSIRTTFLEFFQKNG-HELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 S+ IR FL+FF K H +PSSS++P DP+L F N+GM FK IF GQ P +Q Sbjct: 15 SSSKEIREKFLDFFAKEHLHSRVPSSSVVPYGDPSLAFVNAGMNQFKPIFLGQAAPQHQR 74 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 QKC+R GGKHNDLD+VGR HHTFFEMLG++SF YFK+ A +AW LLT+ + + Sbjct: 75 AVNSQKCIRVGGKHNDLDDVGRDGYHHTFFEMLGSWSFNDYFKKEACSMAWQLLTQVYRI 134 Query: 121 DQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 ++L+IT + DEE ++W + G++AD I+ DNFW M GPCGPC Sbjct: 135 PPQKLFITYFGGNQSLGLPSDEECREIWLSL-GVAADHILPFGMKDNFWEMGLVGPCGPC 193 Query: 173 SEIFFDQGECIPGGLPGSSEEG-ERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLE 231 SEI ++ +G E +EIWNLVFMQ+ + + Q LP IDTGMGLE Sbjct: 194 SEIHVNKANLETSLARTLVNQGTEEVVEIWNLVFMQYNRISNQVLEKLPAHHIDTGMGLE 253 Query: 232 RMATVLQEKTNNYDIDLFKHLIQASEQVT-GMKYEGNNIVN---------HRVIVDHLRS 281 R+ LQ K +NYD DLF LI A Q++ G+ Y+G+ + +R++ DH R Sbjct: 254 RLVAFLQNKNSNYDTDLFLPLIDAVHQISGGVPYQGSYDMQSAQGQRDWAYRLLADHSRM 313 Query: 282 SSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPEL 340 + +ADG P N R LRR+MR+AM +R L++ L + MG YPEL Sbjct: 314 ITVALADGAFPDNNHR---LRRVMRQAMVTSRKWFNQDASLLLELSQRVADMMGGVYPEL 370 Query: 341 IQAKLLIEETLRSEDERFGKTLDR----------------------------GLVLLDGV 372 + + LR E++ F L + GL L+ Sbjct: 371 SRNLSNVHMLLRFEEDIFRDHLAKSGREWSAIVNQFPELSALPTDQQPGLIAGLRQLEDW 430 Query: 373 LSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAH 432 G D+I +G +AFKLY THGL D +Q ++ +G +D F+Q + ++R + Sbjct: 431 RRSSGSDKI-SGSLAFKLYSTHGLQEDSLQLLVQLKGW-NVDWPQFHQLMADERMSTKIQ 488 Query: 433 SLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIV 492 S + + + + K T + D+ + K P D T + Sbjct: 489 S---SAAVSSQFQCATSLKVAPTVWQCQDVCSRNAEGHYTFK------PFDAT-----VT 534 Query: 493 KAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEG 552 + Q G +EEA +G +V V+ D++ FY EAGGQ+ DTG + Q+ ++++ + Sbjct: 535 ALVSQDGRTIEEAATGDRVAVIADKSCFYYEAGGQVSDTGRLLWPTGAGQVEEIRRVGDH 594 Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612 I+ H V G LR ++ + +D NR NH+ATHLLH A+ IL Q S + Sbjct: 595 IY-HLIKVNEGNLRVNQTVQMMLDEDNRLNTMANHTATHLLHAAIKDILKV-TCQKSSYV 652 Query: 613 TPDGLRFDV-THSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGT 670 TP+ RF+ T + E +V + I Q L V ++ A++ G + G Sbjct: 653 TPEHFRFEFGLFQSEFTLEMISQAESSVRNWICQRLAVDRLMLPLHQAVSLDGITLVPGE 712 Query: 671 KYNDRVRVVSVEYEDGGVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 Y D V V+ V E G + +L C GTHV +T ++ I+S S G R + A+T Sbjct: 713 SYPDMVSVIRVAQESGKDEAISLEPCCGTHVRNTADLEEFAILSVKSAGIGSRSVRAVTR 772 Query: 729 QRARSHLMGQDEKLKSL 745 A+ L D+ + L Sbjct: 773 ATAKQSLCRADDLKREL 789 >gi|308803402|ref|XP_003079014.1| SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (ISS) [Ostreococcus tauri] gi|116057467|emb|CAL51894.1| SYA_ARATH Alanyl-tRNA synthetase, mitochondrial precursor (ISS) [Ostreococcus tauri] Length = 1170 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 265/780 (33%), Positives = 406/780 (52%), Gaps = 78/780 (10%) Query: 7 IRTTFLEFF-QKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQA 60 +R TF+ +F +K H PSS +P +DPTL+F N+GM +K IF G+ P Sbjct: 249 VRDTFINYFIEKQNHTPWPSSPAVPVDDPTLLFANAGMNQYKPIFLGKADPKTALAKLSR 308 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE AI AW+LLTK + L Sbjct: 309 ATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTKVYCL 368 Query: 121 DQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 + RLY T + DE EA +W K L +++ DNFW M + GPCGPC Sbjct: 369 PEDRLYATYFGGDESQGLEPDLEAKAIWLKY--LPESRVMPFGCADNFWEMGDVGPCGPC 426 Query: 173 SEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 +EI +D+ GG SS + +EIWN+VF+Q+ +DTGMG Sbjct: 427 TEIHYDR----IGGRDASSLVNMDDPNCLEIWNVVFIQYTH-------------VDTGMG 469 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE---------GNNIVNHRVIVDHLR 280 ER+ ++LQ K +NYD D+F + + +++TG G + +RV+ DH+R Sbjct: 470 FERLTSILQNKPSNYDTDVFMPIFKEIQRITGASPYTGLLGKSDVGEKDMAYRVVADHIR 529 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYPE 339 + IADG P ++GR YVLRR++RRA+ + R LG + L+P + ++G +PE Sbjct: 530 TLCIAIADGAAPGSDGRNYVLRRVLRRAVRFGREKLGAKQGFFAQLVPIVVKQLGYVFPE 589 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLP 397 LI+ K I E + E+ FG+TL++G+ VL K+ +++G AF L++++G P Sbjct: 590 LIEKKKHIVEIIAEEETSFGRTLEKGIAQFKKVLDAATKEGRTVISGPEAFLLWESYGFP 649 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQF 457 D+++ + G +D F +A E + ++RA G SG + ++ + AT + Sbjct: 650 NDLVELMAEEVGFT-LDNEGFAKAFAEAQEKSRAG--GKKSGGVQLLF-----EAEATAW 701 Query: 458 IGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 + + + + + K +P + S++ + G + A + V + Sbjct: 702 LQNNDVSTT---NDSEKYAVGRP-----SHTSTVAAILTPSGFVKSTADAEGPYGFVLNS 753 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDY 577 T FYAE+GGQ+ DTG + + DV K A G +H V G + + +DY Sbjct: 754 TTFYAESGGQVADTGAISTPNGSVSVEDV-KVAAGFVLHTGEVS-GTVSVGEAATCAVDY 811 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 + R + NH+ TH+L++AL + G V Q GS + + LRFD + +K +T+ ++ IE Sbjct: 812 ERRENIMPNHTMTHVLNYALRKVAGDGVDQKGSLVDEEKLRFDFSLNKGLTTKQIADIEA 871 Query: 638 NVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVVSVE-----------YED 685 VN+ I L V R + A+ +G A+ G Y D VRVVSV E Sbjct: 872 VVNEQINAKLSVDKREVALAKAMTINGLRAVFGEVYPDPVRVVSVGPSIDELLADPINEK 931 Query: 686 GGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSL 745 +S CGGTH+ +T ++ E+ I GIRRI A T A+ + +E + ++ Sbjct: 932 WVNYSIEFCGGTHLQTTDFAEQFVVLEETGISKGIRRITAATRGTAKKAIARANELMATV 991 >gi|51260239|gb|AAH79844.1| Aars2 protein [Mus musculus] Length = 975 Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust. Identities = 289/903 (32%), Positives = 456/903 (50%), Gaps = 135/903 (14%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 +++R FL FF+ ++GH L+PS+++ P DP+L+F N+GM FK IF G P + Sbjct: 30 AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 89 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117 + V QKCVRAGG+HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ Sbjct: 90 RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 149 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RL+++ + D D E +W + G+ A +++ +NFW M +TGPC Sbjct: 150 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 208 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI +D + GG+ GS + +E+WNLVFMQ ++ +LP+ +DTGMG Sbjct: 209 GPCTEIHYD----LAGGV-GSPQ----LVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 259 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280 LER+ VLQ K + YD DLF L+ A Q G EG +RV+ DH+R Sbjct: 260 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 319 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339 + S IADG+ P G VLRRI+RRA+ Y+ + P + L+P + +GSAYPE Sbjct: 320 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 379 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLP 397 L + + I + ++ F +L RG ++D + LG ++ +VA+ L G+P Sbjct: 380 LEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 439 Query: 398 LDIMQDILCARGL----AGIDIISFNQAL---------EEQRSRARAHSLG----LGSGT 440 LD+++ +L +G+ AG++ ++ +A +E R H+L G T Sbjct: 440 LDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQGIPT 499 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 T+ KY T D G LC+ + +++ + G Sbjct: 500 TDD-----SPKYNYTLHPNGDYEFG----------LCE----------ARVLQLYSETGT 534 Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAI 559 V +GQ+ ++ D+T FYAE GGQ D G + G + + V + G F+ H Sbjct: 535 AVASVGAGQRCGLLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEA 594 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 + L+ + L +D R + H+ATHLL AL LG Q GS + P+ LRF Sbjct: 595 MAPERLQVGDQVQLYVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRF 654 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 DV +T+ +L+++E V +++ Q+ PV E+ + A + G + D V Sbjct: 655 DVATQTLLTTEQLRTVESYVQEVVGQDKPVFM-----EEVPLAHTARIPGLRSLDEV--- 706 Query: 680 SVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRA 718 Y D +H+S LC GTH+ STG + L I+ E + Sbjct: 707 ---YPDPVRVVSVGVPVAHALGPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVK 763 Query: 719 GIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GI R+ AITG++A ++ +GQ + A+ ++SQG+ R L H Sbjct: 764 GITRLLAITGEQAQQAREVGQSLSQEVEAASERLSQGS------------RDLPEAH--- 808 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-VGISKEKKA 836 +L ++ L+ ++A+ S +I + +EL++ + LQ++ + I L G + EK Sbjct: 809 RLSKDIGRLT--EVAE----SAVIPQWQRQELQTTLKMLQRRANTAIRKLEKGQATEKSQ 862 Query: 837 SVL 839 +L Sbjct: 863 ELL 865 >gi|52630311|ref|NP_941010.2| alanyl-tRNA synthetase, mitochondrial precursor [Mus musculus] gi|115502845|sp|Q14CH7|SYAM_MOUSE RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|109730201|gb|AAI13780.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus] gi|109730687|gb|AAI13173.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Mus musculus] Length = 980 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 289/903 (32%), Positives = 456/903 (50%), Gaps = 135/903 (14%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 +++R FL FF+ ++GH L+PS+++ P DP+L+F N+GM FK IF G P + Sbjct: 35 AAVRDAFLSFFRDRHGHRLVPSATVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117 + V QKCVRAGG+HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ Sbjct: 95 RRVVNSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQV 154 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RL+++ + D D E +W + G+ A +++ +NFW M +TGPC Sbjct: 155 YGIPEDRLWVSYFSGDSQTGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPC 213 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI +D + GG+ GS + +E+WNLVFMQ ++ +LP+ +DTGMG Sbjct: 214 GPCTEIHYD----LAGGV-GSPQ----LVELWNLVFMQHYREADGSLQLLPQRHVDTGMG 264 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDHLR 280 LER+ VLQ K + YD DLF L+ A Q G EG +RV+ DH+R Sbjct: 265 LERLVAVLQGKRSTYDTDLFSPLLDAIHQSCGAPPYSGRVGAADEGRIDTAYRVVADHIR 324 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339 + S IADG+ P G VLRRI+RRA+ Y+ + P + L+P + +GSAYPE Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGSLVPVVVETLGSAYPE 384 Query: 340 LIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHGLP 397 L + + I + ++ F +L RG ++D + LG ++ +VA+ L G+P Sbjct: 385 LEKNSVKIASLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSGNLGIP 444 Query: 398 LDIMQDILCARGL----AGIDIISFNQAL---------EEQRSRARAHSLG----LGSGT 440 LD+++ +L +G+ AG++ ++ +A +E R H+L G T Sbjct: 445 LDLVELMLEEKGVKLDTAGLEQLAQKEAQHRAQQAEADQEDRLCLDVHALEELHRQGIPT 504 Query: 441 TEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE 500 T+ KY T D G LC+ + +++ + G Sbjct: 505 TDD-----SPKYNYTLHPNGDYEFG----------LCE----------ARVLQLYSETGT 539 Query: 501 IVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQ-KKAEGIFVHHAI 559 V +GQ+ ++ D+T FYAE GGQ D G + G + + V + G F+ H Sbjct: 540 AVASVGAGQRCGLLLDRTNFYAEQGGQASDRGYLVRTGQQDMLFPVAGAQLCGGFILHEA 599 Query: 560 VERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRF 619 + L+ + L +D R + H+ATHLL AL LG Q GS + P+ LRF Sbjct: 600 MAPERLQVGDQVQLYVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRF 659 Query: 620 DVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVV 679 DV +T+ +L+++E V +++ Q+ PV E+ + A + G + D V Sbjct: 660 DVATQTLLTTEQLRTVESYVQEVVGQDKPVFM-----EEVPLAHTARIPGLRSLDEV--- 711 Query: 680 SVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIVSESSIRA 718 Y D +H+S LC GTH+ STG + L I+ E + Sbjct: 712 ---YPDPVRVVSVGVPVAHALGPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVK 768 Query: 719 GIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKR 777 GI R+ AITG++A ++ +GQ + A+ ++SQG+ R L H Sbjct: 769 GITRLLAITGEQAQQAREVGQSLSQEVEAASERLSQGS------------RDLPEAH--- 813 Query: 778 KLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIML-VGISKEKKA 836 +L ++ L+ ++A+ S +I + +EL++ + LQ++ + I L G + EK Sbjct: 814 RLSKDIGRLT--EVAE----SAVIPQWQRQELQTTLKMLQRRANTAIRKLEKGQATEKSQ 867 Query: 837 SVL 839 +L Sbjct: 868 ELL 870 >gi|324504252|gb|ADY41836.1| Alanyl-tRNA synthetase [Ascaris suum] Length = 835 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 259/768 (33%), Positives = 404/768 (52%), Gaps = 63/768 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTG-----QEKPVYQ 59 S +R +FL+FF GH +PSSS++P +DP+L+F +GM FK+I G + + Sbjct: 22 SEVRQSFLKFFMDRGHVHVPSSSIVPSDDPSLLFVTAGMNQFKSIILGVCGADDWRSSLR 81 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 V QKC+RAGGKHNDL++VG HHTFFEMLGN+SFG YFK A Q AW+ LT+ Sbjct: 82 RVVNSQKCLRAGGKHNDLNDVGGDLSHHTFFEMLGNWSFGDYFKAEACQFAWEYLTEVLR 141 Query: 120 LDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L RLY+T Y +D E ++W+ + GL +I+R +NFW MA+TGPCGP Sbjct: 142 LPPDRLYVTYYGDDHELSLGDDIECREIWRNL-GLHPSRILRFGVEENFWVMADTGPCGP 200 Query: 172 CSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D GG S + +EIWNLVFMQ+ + LP ID GM Sbjct: 201 CSEIHYD----FIGGRDASHLVNTSDPSVVEIWNLVFMQYNRDASGRIVSLPCRHIDCGM 256 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHL 279 G ER A ++Q+ +NYD D+F LI + T + G I +R I DHL Sbjct: 257 GFERTAAIMQQVQSNYDSDIFSPLISEISKYTSLGGYGGRIGQADIYGRDTAYRTIADHL 316 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYARL-LGYTEPLMMHLLPALCTEMGSAYP 338 R+ I+DG+ P GRGYVLRR++RRA + + L L+ L+P + + ++P Sbjct: 317 RALCVAISDGVRPDAAGRGYVLRRMLRRAARMSSVTLQADRGLLAALVPTYTSHLARSFP 376 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLL-DGVLSHLGKDEILNGDVAFKLYDTHGLP 397 E+ +IE+ + E+ +F + +DRG L + L K +GD+A+ L++THG P Sbjct: 377 EVANNAKVIEDIISLEESQFWRVVDRGERLFAEEAEKSLLKKIPFSGDIAWYLHNTHGFP 436 Query: 398 LDIMQDILCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGAT 455 +++ + R L+ ID+ F + + + R RA+ + T ++ + Sbjct: 437 IELTSMLAEERNLS-IDLDRFEECRNQAKMLRRVRANDTCWRNVDTVRLCQDGMTRTCDM 495 Query: 456 QFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVF 515 Y + ++ +R+ + I+ ++G +E+ + + VV Sbjct: 496 GKYEYAKMDDGSYVFPERQ--------------AKILAIFSKEGIRLEQLATNMEGCVVV 541 Query: 516 DQTPFYAEAGGQLGDTG--CAIGDGIRLQITDVQKKAEGIF-VHHAIVERGILRTEMSLV 572 D+T FYAE GGQL D G C+ + DVQKK + +F + H+ + L E +++ Sbjct: 542 DETIFYAEQGGQLADNGVLCSSNGEEVFVVDDVQKKDDFVFLIGHSTQD---LTVETNVI 598 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 ID R QL H+ THLL AL + G V Q GS ++PD +RFD + ++ ++ Sbjct: 599 QKIDLNRRLQLMRAHTGTHLLLDALRILFGPAVYQRGSLVSPDRIRFDCSLEHALSQGQI 658 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNR------EDAIASGAAALLGTKYNDRVRVVSVEYEDG 686 + +E ++++I + PV T I+ ++ ++ A+L T N +RVV++ Sbjct: 659 REVERVLSEVIESDQPVFTEIVPHTQLSAIQNIQSTITASLTETASNGLIRVVTINAPVN 718 Query: 687 GVHSSAL--CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 G + A+ C GTHV +T ++ +VS+ S+ +G+RR+ A+TG AR Sbjct: 719 GKSARAVECCCGTHVLNTRDLGAFVVVSDRSLGSGVRRLTALTGTAAR 766 >gi|148377682|ref|YP_001256558.1| alanyl-tRNA synthetase [Mycoplasma agalactiae PG2] gi|205830150|sp|A5IYK5|SYA_MYCAP RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|148291728|emb|CAL59114.1| Alanyl tRNA synthetase (Alanine tRNA ligase) (ALARS) [Mycoplasma agalactiae PG2] Length = 880 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 286/915 (31%), Positives = 464/915 (50%), Gaps = 106/915 (11%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +L+FF+ H ++ S SLIP ND +L++ NSG+ KN F+G++ P +T Sbjct: 7 TEIRQKWLDFFESKNHLVIESKSLIPVNDSSLLWINSGVATLKNYFSGKKVPPAFRLTNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK +R ND++NVG T+RHHTFFEMLGNFS G YFK+ AI A + L ++D + Sbjct: 67 QKAIRT----NDIENVGVTSRHHTFFEMLGNFSIGNYFKKEAIAYAKEFLVNVLEMDFEK 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LY T Y+ED EA W + +G+ +I T + NFW + +GPCGPC+EIF+D+GE Sbjct: 123 LYFTYYEEDLEAKNYWLE-NGVDESHLISGTRDTNFWDLG-SGPCGPCTEIFYDRGEKYD 180 Query: 185 G---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 L + E +RYIEIWN+VF QF + L + +IDTG GLER+A+++Q+ Sbjct: 181 RRGLDLLKNDIENDRYIEIWNIVFSQFNNDGEGNYTELKQKNIDTGAGLERLASIMQDVP 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY-----------EGNNIVNHRVIVDHLRSSSFLIADGI 290 NYD DLF ++I+ E+ + KY +G N ++I DH+R+ IADG Sbjct: 241 TNYDSDLFINIIREIEKYSPYKYVIENYFAKDEHQGEINTNFKIIADHIRTVVNAIADGA 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 +N GRGY++RR++RR+ LG + + L+ + + Y E K +I+ Sbjct: 301 KVSNVGRGYIIRRLLRRSYYKGMQLGIKDLFLHKLVKVVKDSLPYEYNE----KDVID-A 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 ++ E+ F KT+++G +LL+ L + ++++ +G VAF L +T+G P+++ +IL +G+ Sbjct: 356 IKEEELLFSKTIEKGKILLESFLDN--ENKVFDGAVAFNLLETYGFPIELTAEILHQKGI 413 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKI-WFSLKEKYGATQFIGYDLLRGSKFM 469 + +D+ +F A E+ A A G +G + I +L +K F+GY L + Sbjct: 414 S-VDMDAFELAKEKH---ALASKGGKATGMDKVINSLALIDK-KMDNFVGYSELSAN--- 465 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 S ++K ++ E+ G V+ + TPFYA +GGQ Sbjct: 466 -------------------SKVLKLFDEENEVEGFETGGY---VLLETTPFYATSGGQRH 503 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G I +++I DV K G +H G + + +D R L NHS Sbjct: 504 DKGFIIQGENKIKIIDVFKDKFGNHIHFV---EGKMNNHEPVSSFVDPNIRIGLERNHSG 560 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL AL +LGSH+ Q GS + L FD + + ++K++ED V I +++ Sbjct: 561 THLLFCALRNVLGSHIEQLGSDNNEERLTFDFPADEKPSDEQIKAVEDLVRSYITKSIDR 620 Query: 650 VTRIMNREDAIASGAAALL--GTKYNDR-VRVVSVEYEDGGVHSSALCGGTHVSSTGEIM 706 + A GA L G + R +RVV G +S LCGGTH+S+T ++ Sbjct: 621 EYITTTVDKAREMGAIMTLEEGEYMDPRAIRVVRF-----GDITSDLCGGTHLSNTSKLE 675 Query: 707 LLYIVSESSIRAGIRRIEAITGQRARSHLMGQ-----DEKLKSLASFLKVSQGNVVG--- 758 I + +AG+ RI AI+ + + + + +E+L ++ +K + + V Sbjct: 676 SFKITNVEKKQAGVFRIRAISSSKLVNEYLSKVNKKLNEELATIIKKIKELKSDYVAPAI 735 Query: 759 ----------------RVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIIS 802 R++E+ E Y+ QL+ L+ + E + KI D + +I Sbjct: 736 NENEPDIETLNASINKRIDELREVYK--QLLKESSNLEFDYETVKFDKIKDYDV--YINL 791 Query: 803 EVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKV 862 +VD+ +K + +++ K Q G + + SK + +L + T A+D ++ K+ Sbjct: 792 DVDASAVKLIAASIRDKFQLGKTVAIIGSKNENELLLAIATR-------AIDANKMFKKL 844 Query: 863 LG--GGGGGGRPHMA 875 G GGG P +A Sbjct: 845 ASELNGRGGGAPILA 859 >gi|157818067|ref|NP_001100361.1| alanyl-tRNA synthetase, mitochondrial [Rattus norvegicus] gi|313471549|sp|D3ZX08|SYAM_RAT RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|149069292|gb|EDM18733.1| alanyl-tRNA synthetase like (predicted) [Rattus norvegicus] Length = 985 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 267/780 (34%), Positives = 412/780 (52%), Gaps = 79/780 (10%) Query: 5 SSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----Y 58 +++R FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P + Sbjct: 35 AAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGF 94 Query: 59 QAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKE 117 + V QKCVRAGG+HNDL++VGR HHTFFEMLGN++FGG YFK+ A +AW+LLT+ Sbjct: 95 RRVANSQKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKKEACSMAWELLTQV 154 Query: 118 FDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPC 169 + + + RL+++ + D D E +W + G+ A +++ +NFW M +TGPC Sbjct: 155 YGIPEDRLWVSYFSGDSKTGLDPDLETRDIWLSL-GVPASRVLSFGLQENFWEMGDTGPC 213 Query: 170 GPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 GPC+EI +D + GG+ G + +E+WNLVFMQ ++ +LP+ +DTGMG Sbjct: 214 GPCTEIHYD----LAGGM-GPPQ----LVELWNLVFMQHYREADGSLHLLPQQHVDTGMG 264 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQV---------TGMKYEGNNIVNHRVIVDHLR 280 LER+ VLQ K + YD DLF L+ A Q G EG +RV+ DH+R Sbjct: 265 LERLVAVLQGKHSTYDTDLFSPLLDAIHQSCRVPPYSGRVGAADEGRIDTAYRVVADHIR 324 Query: 281 SSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPE 339 + S IADG+ P G VLRRI+RRA+ Y+ + P + +L+P + +G+AYPE Sbjct: 325 TLSVCIADGVSPGMSGAPLVLRRILRRAVRYSTEVLQAPPGFLGNLVPVVVATLGAAYPE 384 Query: 340 LIQ--AKLLIEE--TLRSEDE-RFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYD 392 L + K+LI E L SEDE F +L RG ++D + LG ++ +VA+ L Sbjct: 385 LQKNSVKVLIWEIANLVSEDEAAFLASLQRGRRIIDRTVKRLGPSDLFPAEVAWSLSLSG 444 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQ-ALEEQRSRARAHSLGLGSGTTEKIWFSLKEK 451 G+PLD++Q +L +G+ +D Q A +E + RA+ G + +L+E Sbjct: 445 NLGIPLDLVQLMLEEKGVK-LDTAGLEQLAQKEAQHRAQQAEAAQEEGLCLDV-HALEEL 502 Query: 452 YGATQFIGYDLLRGSKFMKEDRKV-LCQKPPIDLTNGV--SSIVKAIVQQGEIVEEAVSG 508 + +G + K +P D G+ + +++ + G V G Sbjct: 503 H----------RQGIPTTDDSPKYNYSLRPNGDYEFGLCEAQVLQLYSETGTAVASVGEG 552 Query: 509 QKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRT 567 Q+ ++ D+T FYAE GGQ D G I G + + V + + G F+ H + L+ Sbjct: 553 QRCGLLLDRTNFYAEQGGQASDRGYLIRTGQQDVLFPVARAQVCGGFILHEAMAPECLQV 612 Query: 568 EMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPI 627 + L +D R + H+ATHLL+ AL LG Q GS + P+ LRFDV P+ Sbjct: 613 GDRVQLYVDKAWRMGCMVKHTATHLLNWALRQTLGPTTEQRGSHLNPERLRFDVATQTPL 672 Query: 628 TSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV----------- 676 T+ +L+++E V + + Q+ PV E+ + A + G + D V Sbjct: 673 TTEQLRTVESYVQEAVGQDKPVYM-----EEVPLAHTARIPGLRSLDEVYPDPVRVVSVG 727 Query: 677 ----RVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRAR 732 + ++ + S LC GTH+ STG + L I+ + + GI R+ AITG++A+ Sbjct: 728 VPVAQALAPASQAALQTSVELCCGTHLLSTGAVGDLVIIGDRQLVKGITRLLAITGEQAQ 787 >gi|219558559|ref|ZP_03537635.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17] gi|289570724|ref|ZP_06450951.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17] gi|289544478|gb|EFD48126.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T17] Length = 797 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 285/804 (35%), Positives = 431/804 (53%), Gaps = 52/804 (6%) Query: 118 FDLDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFF 177 + LD R++ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGP SEI++ Sbjct: 10 YGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYY 69 Query: 178 DQG-ECIPGGLPGSSEEGERYIEIWNLVFMQFE------QQNKQERFILPKMSIDTGMGL 230 D+G E P G P SE+ RY+E+WNLVFMQ E +++ Q LP+ +IDTGMG+ Sbjct: 70 DRGPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGV 127 Query: 231 ERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIA 287 ER+A VLQ+ N Y+ DL + +I +V Y+ GN + V +R+I DH R+++ LI Sbjct: 128 ERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIG 187 Query: 288 DGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 DG+ P N+GRGYVLRR++RR + A+LLG ++ L+ + MG +YPEL+ I Sbjct: 188 DGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERI 247 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDIL 405 +E+ F +TL G L + V S K +L+G AF L+DT+G P+++ ++ Sbjct: 248 SRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMA 307 Query: 406 CARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRG 465 GL +D I F + + EQR RA+A + + + GAT+F G+D LR Sbjct: 308 AETGLQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR- 365 Query: 466 SKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAG 525 S+ V ++ P+ + +GV+ A GQ+VE+V D+TP YAE+G Sbjct: 366 SQARILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESG 411 Query: 526 GQLGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 GQ+ D G G G R +TDVQK A+ ++VH VE G +++ +D RR Sbjct: 412 GQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRR 471 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + HS TH++H AL +LG + Q GS P LRFD P+T + +E+ N+ Sbjct: 472 GATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNE 531 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + + V T + A A GA AL G Y D VRVV E GG S LCGGTHVS+ Sbjct: 532 AVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSN 587 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 T +I + I+ ESSI +G+RR+EA G + HL + + LAS LKV V RV Sbjct: 588 TAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVA 647 Query: 762 EIWEEYRKLQLIHAKRKL-----QLNVEDLSCHKIADVNFMSHIIS-EVDSKELKSVMDA 815 + E R + + ++ +I +V ++ +S + + +L+S++ Sbjct: 648 NLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGD 707 Query: 816 LQKKIQSGIIMLVGISKEKKASVLIVV-----TEDLLDRFNAVDLARLSAKVLGGGGGGG 870 ++ K+ S ++ I++ + +V V +DL R N DL + A + G GGG Sbjct: 708 IRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRAN--DLVKQLAVAV-EGRGGG 764 Query: 871 RPHMAQSGGPNGNKADQAIAGVAS 894 + +AQ G N D A+ V S Sbjct: 765 KADLAQGSGKNPTGIDAALDAVRS 788 >gi|213420683|ref|ZP_03353749.1| alanyl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 340 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 194/337 (57%), Positives = 245/337 (72%), Gaps = 12/337 (3%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRNYSRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AIQ AW+LLT E F L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTGENWFAL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTN-------DNFWSMAETGPCGPCS 173 + RL++TVY+ D+EA+++W+K G+ ++IIRI N DNFW M +TGPCGPC+ Sbjct: 124 PKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCT 183 Query: 174 EIFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EIF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q LPK S+DTGMGLER Sbjct: 184 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEPLPKPSVDTGMGLER 243 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILP 292 +A VLQ +NYDIDLF+ LI+A +VTG GN + RVI DH+RS +FL+ADG+LP Sbjct: 244 IAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNKSL--RVIADHIRSCAFLVADGVLP 301 Query: 293 ANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPAL 329 +NE RGYVLRRI+RRA+ + +LG E L+ L Sbjct: 302 SNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPL 338 >gi|90019286|gb|ABD84294.1| alanyl-tRNA synthetase-like [Yersinia sp. MH-1] Length = 366 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/365 (54%), Positives = 260/365 (71%), Gaps = 11/365 (3%) Query: 3 NVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVT 62 + + IR FL+FF GH+++ SSSL+P NDPTL+FTN+GM FK++F G +K Y T Sbjct: 4 STAEIRQAFLDFFHSKGHQVVSSSSLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYTRAT 63 Query: 63 TVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKE--FDL 120 T Q+CVRAGGKHNDL+NVG T RHHTFFEMLGNFSFG YFK AI AW+LLT E F+L Sbjct: 64 TSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEKWFNL 123 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRI------TTNDNFWSMAETGPCGPCSE 174 + +L++TVY+ D+EA+ +W G+ ++IIRI +DNFW M +TGPCGPCSE Sbjct: 124 PKEKLWVTVYETDDEAYNIWANDVGVPRERIIRIGDKGAPFASDNFWQMGDTGPCGPCSE 183 Query: 175 IFFDQGECIPGGLPGSSEE-GERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERM 233 IF+D G+ I GG PGS EE G+RYIEIWN+VFMQF +Q+ LPK S+DTGMGLER+ Sbjct: 184 IFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERI 243 Query: 234 ATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNHRVIVDHLRSSSFLIADGILPA 293 A VLQ NY+IDLF+ LI A +VTG N + RVI DH+RS +FLI+DG++P+ Sbjct: 244 AAVLQHVNTNYEIDLFRDLIAAVAEVTGAT--DLNSKSLRVIADHIRSCAFLISDGVIPS 301 Query: 294 NEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRS 353 NE RGYVLRRI+RRA+ + +LG + L+ L MGSA EL Q + ++E+ L++ Sbjct: 302 NENRGYVLRRIIRRAIRHGNILGAKDTFFYKLVAPLIAVMGSAADELKQQQAMVEQVLKT 361 Query: 354 EDERF 358 E+E+F Sbjct: 362 EEEQF 366 >gi|156101531|ref|XP_001616459.1| alanyl-tRNA synthetase [Plasmodium vivax SaI-1] gi|148805333|gb|EDL46732.1| alanyl-tRNA synthetase, putative [Plasmodium vivax] Length = 1197 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 277/871 (31%), Positives = 440/871 (50%), Gaps = 116/871 (13%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R F+ +F++ H ++ S+S+IP ND TL+FTN+GM FK IF GQ + +A Sbjct: 213 VRGGFINYFKEKNHTVVESASVIPYNDNTLLFTNAGMNQFKKIFLGQVDKSSDLGKLKRA 272 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE +I AWDLLT + + Sbjct: 273 VDT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIDYAWDLLTNVYKI 331 Query: 121 DQRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 D RLY+T + DE E K+W K + +I+ +NFW MA+TGPCGP Sbjct: 332 DPNRLYVTYFGGDEKLASCPEDLETKKIWLKY--VDESRILPFGMKENFWEMADTGPCGP 389 Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ G SS ++ +EIWN+VFMQ+ + K+ LP IDTGM Sbjct: 390 CSEIHYDR----IGNRDASSLVNKDDPSVLEIWNIVFMQYNKDEKKNMNKLPFPCIDTGM 445 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVN----------HRVIVDH 278 GLER+ ++LQ +NYD DLF + + +++ E VN +RV+ DH Sbjct: 446 GLERITSILQNVESNYDTDLFMPIFKQIKEIFNYLPEYGGKVNEEDVDRIDYAYRVVSDH 505 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL---GYTEPLMMHLLPALCTEMGS 335 +R + I+DG LP NEGR YV+RRI+RRA+ + + G L+ ++C + Sbjct: 506 IRCVTIAISDGCLPGNEGRNYVIRRIIRRAIRVGKQIFQVGSNVLWFYKLVDSVCHILNK 565 Query: 336 AYPELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSH---LGKDEILNGDVAFKL 390 + +L + I+ ++ E+ F +TL++G+ + ++ G D + +G AF L Sbjct: 566 CFTDLKDEDRVNYIKSVIKQEEMVFNRTLEKGVDQFNKIIKRGNTSGGDNLFSGKDAFDL 625 Query: 391 YDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG---TTEKIWFS 447 Y ++G P+D++Q I+C +++ FN+ + + + ++ + EK Sbjct: 626 YTSYGFPIDLVQ-IMCEEKNFKLNMTEFNELFRKHQLVSDTNNFKINKFFDLPVEKA-HE 683 Query: 448 LKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGE----IVE 503 LKEK+G + + ++ D K + K + GV ++ GE +E Sbjct: 684 LKEKHGVAATVDH---YKYEWNNADGKNVMAK----VDTGV-----VVIYDGENFLDSIE 731 Query: 504 EAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERG 563 A +K ++ +T FY E GGQ+ DTG + ++ ++ +VQK E + +H +++ G Sbjct: 732 TASEDKKYALILRETNFYYENGGQIYDTGVIQNEQMKFEVVNVQKMNEYV-LHIGVLQEG 790 Query: 564 ILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHV------------------ 605 ++ + +++ R+ ++ NH+ATHLL+ + +L +V Sbjct: 791 KIQKNDCVHTVVNFDRRKLVACNHTATHLLNFVIKKVLTEYVMHSKGGAQNGDLAHTPNE 850 Query: 606 ------------SQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 Q GS + + LRFD + + ++ + IE VND+I Q L V R Sbjct: 851 KEQTGGNSIFNCDQKGSLVDDEKLRFDFSFFQNVSDELVSKIESQVNDLIRQELSVSVRT 910 Query: 654 MN-REDAIASGAAALLGTKYNDRVRVVSVEYEDGGV-----------HSSALCGGTHVSS 701 M+ +E G A+ Y D V VV ++ + + S LCGGTH+++ Sbjct: 911 MDLKESKKIKGIRAIFEEDYADVVNVVFIDNDVDKILNHLDVNYSYLCSIELCGGTHIAN 970 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFL------KVSQGN 755 T I I SE SI GI RI A+T ++A D+ L K++ Sbjct: 971 TKFIKKFVITSEESIGKGIYRINAVTNKKAEEVEAKFDDLLAKYKHIFDDPNEGKLADVQ 1030 Query: 756 VVGRV--EEIWEEY-RKLQLIHAKRKLQLNV 783 RV E+ + Y RK Q++H K++ N+ Sbjct: 1031 TYKRVLKEDKFLPYIRKNQILHNLEKIEKNI 1061 >gi|124514064|ref|XP_001350388.1| alanine--tRNA ligase, putative [Plasmodium falciparum 3D7] gi|23615805|emb|CAD52797.1| alanine--tRNA ligase, putative [Plasmodium falciparum 3D7] Length = 1408 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 264/843 (31%), Positives = 421/843 (49%), Gaps = 144/843 (17%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP------VYQA 60 +R F+ +F K H ++ SSS++P ND TL+FTN+GM FK IF G + +A Sbjct: 394 VRNNFINYFHKKNHTIIESSSVVPYNDNTLLFTNAGMNQFKKIFLGNADKNSDLGKLKRA 453 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 V T QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE +I AWDLLT + + Sbjct: 454 VDT-QKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESISFAWDLLTNVYKI 512 Query: 121 DQRRLYITVY--DE-------DEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 + RLY+T + DE D E K+W K +S D+I+ +NFW MAETGPCGP Sbjct: 513 NPDRLYVTYFGGDENLSTCPADHETKKIWMKY--ISEDRILPFGLKENFWEMAETGPCGP 570 Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 CSEI +D+ G SS ++ +EIWN+VFMQ+ + + LP IDTGM Sbjct: 571 CSEIHYDR----IGNRDASSLVNKDDPSVLEIWNIVFMQYNKDENKNMNKLPFPCIDTGM 626 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM--KYEGNNIVN----------HRVIV 276 GLER+ ++LQ +NYD DLF+ + + +++ YEG +N +RVI Sbjct: 627 GLERITSILQNVDSNYDTDLFQPIFKQIKELFPYLPNYEGK--INEQDVDKIDTAYRVIS 684 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM---HLLPALCTEM 333 DH+R + I+DG LP+NEGR YV+RRI+RRA+ + + + + ++ L+ ++C + Sbjct: 685 DHIRCVTVAISDGCLPSNEGRNYVIRRIIRRAIRFGKQVFNIKSNVLWFYKLVDSVCFIL 744 Query: 334 GSAYPELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY 391 G+ + +L + I+ T++ E+ F KTL++G+ ++ K+ I +G AF LY Sbjct: 745 GNTFKDLQNPDKINFIKNTIKQEEMVFNKTLEKGVEQFHKIIKKNTKNNIFSGKDAFDLY 804 Query: 392 DTHGLPLDIMQDILCARGLAGIDIISFNQ----------------------ALEEQRSRA 429 + G P+D++Q I+C +D+ FN +E+ Sbjct: 805 TSFGFPIDLIQ-IMCEEKSFNLDLQEFNDLFKKHQLVSDTNNFKINKFFDIPVEKSHELK 863 Query: 430 RAHSLGLGSGTTEKIWFSLKEKYGATQFIGYD-----LLRGSKFMKEDRKVLCQKPPIDL 484 H++ + W + G + I ++ + G+ F+ D Sbjct: 864 NVHNINPTVDHFKYEWNNNCANDGDNKDIKFETYVQVIYDGNNFL-------------DN 910 Query: 485 TNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQIT 544 S+ + ++++ + +EE + +K ++ +T FY E GGQ+ DTG D ++ Q+ Sbjct: 911 FTLPSNNDEQVLEKEKSIEE--NKKKYALILKETNFYYENGGQIYDTGIIQNDNMKFQVL 968 Query: 545 DVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSH 604 +VQK E + +H + +G + + +D+ R+ ++ NH+ATH+L+ L +L Sbjct: 969 NVQKINEYV-LHIGVFLKGYVSKNDKVQTIVDFDRRKLVACNHTATHMLNFMLRKVLTEK 1027 Query: 605 VS--------------------------------------------QNGSCITPDGLRFD 620 + Q GS + + LRFD Sbjct: 1028 YTNSGKSSKTHEGNNEKHEMSENDINSNNNYDNNKEEKGFSIFTCEQKGSLVDDEKLRFD 1087 Query: 621 VTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIA-SGAAALLGTKYNDRVRVV 679 + + I + IE+ +N +I + L V + M+ +++ G A+ Y D+V VV Sbjct: 1088 FSFIENINIDAITKIENEINKLIKEELNVTVKTMDLDESKKIKGIRAIFEEDYADKVNVV 1147 Query: 680 SVEYEDGGV-----------HSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 + + + HS LCGGTH+ +T I + SE SI GI RI A+T Sbjct: 1148 FINKDVNNILNNMNIDYTYLHSIELCGGTHIGNTKLIRKFLVTSEESIGKGIYRITAVTN 1207 Query: 729 QRA 731 ++A Sbjct: 1208 KKA 1210 >gi|170594914|ref|XP_001902174.1| alanyl-tRNA synthetase family protein [Brugia malayi] gi|158590293|gb|EDP28977.1| alanyl-tRNA synthetase family protein [Brugia malayi] Length = 863 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 261/766 (34%), Positives = 399/766 (52%), Gaps = 74/766 (9%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEK-----PVYQAV 61 IR +FLE+F+++ H +PSSS+IP +D ++ F N+GM FK +F G + + V Sbjct: 60 IRLSFLEYFKEHNHTYVPSSSVIPEDDSSVTFVNAGMNQFKPLFLGAKYTEGKLAALRNV 119 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+R GGKHND D+VGR HHTFFEMLGN+SFGGY K A AW+ LT + Sbjct: 120 VNWQKCIRIGGKHNDFDDVGRDLTHHTFFEMLGNYSFGGYSKMEACLYAWNFLTDVLKIP 179 Query: 122 QRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCS 173 RLYIT + ED E +W K+ G+ D+++ +N NFW MA+TGPCGPCS Sbjct: 180 ADRLYITYFGGDESMKLKEDRECRDIWIKL-GVPEDRVLGFCSNHNFWEMAQTGPCGPCS 238 Query: 174 EIFFDQ-GECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLER 232 EI +D G L SS +EIWNLVFMQF + + LP + ID GMG ER Sbjct: 239 EIHYDLIGNRKAQKLVNSS--NPTVVEIWNLVFMQFSRDISGKISSLPTLYIDCGMGFER 296 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI----VNHRVIVDHLRSSSFLIAD 288 + +++Q + YD DLF L++ + + ++ G + +R++ DHLR++ +I+D Sbjct: 297 LVSIVQGLHSAYDTDLFLPLMRIIHEYSKVRGYGGQLGDIDTAYRIVADHLRAACIMISD 356 Query: 289 GILPANEGRGYVLRRIMRR-AMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLI 347 G+ P++ RGY LRR++RR A+ + LG ++ L+P + Y + + +I Sbjct: 357 GVEPSSRNRGYHLRRVLRRAALNFTLTLGAERGMLASLVPDFVNHITLLYNNVAACETVI 416 Query: 348 EETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCA 407 +T+ SE++ F ++ D+G LL+ ++ + +L+G++A+ L T+GLPL I Q I Sbjct: 417 AKTVMSEEQLFWRSYDKGCKLLEHNIA--SQQHVLSGEIAWMLSGTYGLPLSITQKICRE 474 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 +GL +D+ F Q L + +A E++W +K + I L G + Sbjct: 475 KGLK-VDVDGFQQCLANFQKAQKAE---------EELW----QKIDLEEMI----LNGVE 516 Query: 468 FMKEDRKVLCQKPPI---DLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + K C++ + + + ++V G+ V G+ VV D T F+AE Sbjct: 517 PTNDSEKYCCERIELGKYEFPSRTGTVVAIFDVNGKNVMSLNPGELGSVVMDSTIFFAEQ 576 Query: 525 GGQLGDTGCAIGDGIR--LQITDVQKKAEGIFVHHA-IVERGILRTEMSLVLTIDYQNRR 581 GGQL D G + D + + I + K+ G +H + + GIL ++L ID + R Sbjct: 577 GGQLYDRG-ILQDNLNNTIFIVNSVKRRNGYIIHTGKVADNGILEKGVNLTQIIDPKQRF 635 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFD-VTHSKPITSAELKSIEDNVN 640 L H+ATH+LH AL + G V Q GS I PD L FD + I +++ + VN Sbjct: 636 FLMCGHTATHILHFALEKVFGVSVRQMGSFIGPDKLHFDFFIPDQKIALEKIEKVMAMVN 695 Query: 641 DIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRV-VSVEYEDGG------VHSSAL 693 +II N+ V + + +E+ LG+ + D +S E G V SSAL Sbjct: 696 NIIESNINVTVKYILQEE---------LGSLHKDFSAFDISQEASSNGSYRIITVESSAL 746 Query: 694 --------CGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 C GTHV +T +I I+ + S A +RRI A+T A Sbjct: 747 LGQDIIEPCCGTHVLNTSDIGRFVIIGQKSRGANVRRIYAVTNSAA 792 >gi|171687707|ref|XP_001908794.1| hypothetical protein [Podospora anserina S mat+] gi|170943815|emb|CAP69467.1| unnamed protein product [Podospora anserina S mat+] Length = 911 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 310/949 (32%), Positives = 459/949 (48%), Gaps = 138/949 (14%) Query: 43 MVPFKNIF---TGQEKPV--YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFS 97 M FK +F G+ +P+ + QKC+RAGGKHNDLD+VG+ + HHTFFEMLGN+S Sbjct: 1 MAQFKPLFLGTVGKTEPMAALKRAADTQKCIRAGGKHNDLDDVGKDSYHHTFFEMLGNWS 60 Query: 98 FGGYFKERAIQLAWDLLTKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSAD 149 FG YFK+ AI W+LLTK + LD RLY+T ++ +E EA +LW G+ D Sbjct: 61 FGDYFKKEAIGWTWELLTKVYGLDPNRLYVTYFEGNEAMGLEPDLEAKQLWLD-QGVPED 119 Query: 150 KIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFM 206 I+ DNFW M + GPCGPCSE+ +D+ GG + +++ +EIWN VFM Sbjct: 120 HILPGNMKDNFWEMGDQGPCGPCSEVHYDK----VGGRNAAHLVNQDDPLVVEIWNNVFM 175 Query: 207 QFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGM---- 262 Q+++Q + LP IDTG+G ER+ + LQ K++NYD D+F L +V+G Sbjct: 176 QYDRQKDRSLKPLPAKHIDTGLGFERLVSALQHKSSNYDTDVFAPLFAKIVEVSGSRPYS 235 Query: 263 -KYEGNNI----VNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR--LL 315 KY +++ RV+ DH+R SF IADG +P N GRGYV+RR++RR + YAR L Sbjct: 236 DKYGKDDVDGVDTALRVVADHIRLLSFSIADGAVPGNIGRGYVVRRVLRRGVRYARKYLN 295 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 +LPAL +MG +PEL + + I+E L E+ F TLDRG + + + Sbjct: 296 ANIGSFFSQILPALVEQMGEQFPELKKKEADIKEILDEEEVAFAVTLDRGEAMFEKYAAA 355 Query: 376 LGK--DEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHS 433 K ++ L+G ++LYDT G P+D+ + + RGL ID A E+ R ++A Sbjct: 356 ATKAGEKKLSGADVWRLYDTFGFPVDLTKLMAEERGLT-IDEEEVKVAQEKAREASKAVK 414 Query: 434 LGLGS-------------------GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRK 474 + + T + +S + G Q I GS+F++ + Sbjct: 415 EAVTTFPKLTVHHISELENDRNIPRTDSEAKYSAQSSEGKIQLI----FNGSEFIENSKD 470 Query: 475 VLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTG-C 533 V + P + ++ D+T FYAE+GGQ+ DTG Sbjct: 471 VPPKTP------------------------------LGIILDKTNFYAESGGQVADTGRI 500 Query: 534 AIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLL 593 I D ++ D Q+ G VH +E G L+ + D R+ + NH+ TH+L Sbjct: 501 IIDDEAEFKVLDTQEFG-GYVVHSGFLEYGNLKAGDVVKCEFDELRRQPIRNNHTGTHVL 559 Query: 594 HHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRI 653 +HAL +LG V+Q GS + D LRFD +H +T E+K IE+ N I +NL V + Sbjct: 560 NHALREVLGDTVNQAGSLVDQDKLRFDFSHKTQVTLPEIKRIEELSNADIRKNLKVYAKD 619 Query: 654 MNREDAIA-SGAAALLGTKYNDRVRVVSV-----------EYEDGGVHSSALCGGTHVSS 701 + +A +G A+ G Y D VRVVSV + + S CGGTHV + Sbjct: 620 VALSEAREINGLRAVFGETYPDPVRVVSVGASVEEMLKDPKNPEWRQFSVEFCGGTHVDA 679 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEK-----LKSLA---------S 747 TG I L IV ES I GIRRI A TG A +H QD K L +A S Sbjct: 680 TGLIKDLIIVEESGIAKGIRRIVAYTG--AGAHQAQQDAKDFSDRLDHIAALEFGPEKVS 737 Query: 748 FLKVSQGNVVGRV-----------------EEIWEEYRKLQLIHAKRKLQLNVEDLSCHK 790 +K + ++ V + + +E +K Q + L + + K Sbjct: 738 LVKAASVDLDALVISVLTKEELRKKFATIQKSVLDEQKKRQKAESGTALSTVQKFFADEK 797 Query: 791 IADVN-FMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDR 849 D F+ H+ ++K + VM + K ++ + L SK++ + V D L Sbjct: 798 NKDAKAFVGHLPISANAKAISEVMTYYKSKDKAKSVYLFAGSKDEAVVHGVYVGTD-LKG 856 Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 A +++GG GG P Q G N K D+A+ +L++ Sbjct: 857 VTAEQWTAAVTEIIGGKTGGKEPSR-QGAGSNPEKLDEAVTKAQQWLEE 904 >gi|194039401|ref|XP_001929628.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial [Sus scrofa] Length = 985 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 282/921 (30%), Positives = 456/921 (49%), Gaps = 149/921 (16%) Query: 2 SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--- 57 + +++R FL FF+ ++GH L+PS+S+ P DPTL+F N+GM FK IF G P Sbjct: 37 TQAAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPTLLFVNAGMNQFKPIFLGTVDPRSEM 96 Query: 58 --YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLL 114 ++ V QKCVRAGG+HNDL++VG+ HHTFFEMLGN++FGG YFKE A +AW+LL Sbjct: 97 AGFRRVANSQKCVRAGGRHNDLEDVGQDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELL 156 Query: 115 TKEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAET 166 T+ + + + RL+++ + D E+ +W + G+ A +++ +NFW M +T Sbjct: 157 TQVYGIPEDRLWVSYFGGDPKAGLGADLESRDIWLNL-GVPASRVLSFGPQENFWEMGDT 215 Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCGPC+EI +D + GG+ + +E+WNLVFMQ ++ LP+ +DT Sbjct: 216 GPCGPCTEIHYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDT 266 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVD 277 GMGLER+ VLQ K + YD DLF L+ A Q G EG+ +RV+ D Sbjct: 267 GMGLERLVAVLQGKHSTYDTDLFSPLLNAIHQGCGAPPYSGRVGAADEGHIDTAYRVVAD 326 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSA 336 H+R+ S IADG+ P G ++RRI+RRA+ ++ + P + L+P + +G A Sbjct: 327 HIRTLSICIADGVSPGMSGAPLIVRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGGA 386 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTH 394 YPEL + I + ++ F +L RG +++ L LG ++ +VA+ L Sbjct: 387 YPELHKNSAQIVSLVSEDEAAFLASLQRGRRIIERTLKRLGPSDVFPAEVAWSLSLSGNL 446 Query: 395 GLPLDIMQDILCARGL----AGIDIISFNQA---------LEEQRSRARAHSLG----LG 437 GLPLD+++ +L +G+ AG+ ++ +A ++EQ R H+LG G Sbjct: 447 GLPLDLVELMLEEKGVQLDSAGLARLAQEEAQHRAQQAEPVQEQGLRLDVHALGELQRRG 506 Query: 438 SGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 T+ S K Y GY+ C+ + +++ + Sbjct: 507 VPPTDD---SPKYSYSLRPSGGYEF------------STCE----------ARVLQLYAE 541 Query: 498 QGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV-----QKKAEG 552 G V GQ+ ++ D+T FYAE GGQ D G +R++ DV Q + G Sbjct: 542 DGRAVATTGEGQRYGLLLDRTNFYAEQGGQASDRGYL----VRVEQQDVLFPVAQAQVCG 597 Query: 553 IFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCI 612 F+ H +V L+ + L +D R H+A HLL+ AL LG Q GS + Sbjct: 598 GFILHEVVAPECLKVGDRVQLHVDEAWRLSCMEKHTAAHLLNWALRKALGPSTEQRGSHL 657 Query: 613 TPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKY 672 +P+ LRFDV P+T +L+++ED V + + R++A+ AL T + Sbjct: 658 SPERLRFDVATQAPLTPKQLQAVEDTVQEAV-----------GRDEAVYMEEVALARTTH 706 Query: 673 NDRVRVVSVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIV 711 +R + Y D + +S LC GTH+ TG I L IV Sbjct: 707 VPGLRSLDEVYPDPVRVVSVGVPVAHALEPASQAALQTSVELCCGTHLLRTGAIGDLVIV 766 Query: 712 SESSIRAGIRRIEAITGQRAR-SHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKL 770 E + G R+ AITG++AR + +GQ + A+ ++S+G+ Sbjct: 767 GERQLAKGTTRLLAITGEQARQAREVGQSLAQEVEAAAERLSRGS--------------R 812 Query: 771 QLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGI 830 ++ A+R +D+ ++ D S ++ + +EL++ + ALQ++ + I Sbjct: 813 DVVEAQRL----SKDMG--RLTDAVDTS-VMPQWQRRELQATLKALQRRANTAI------ 859 Query: 831 SKEKKASVLIVVTEDLLDRFN 851 ++ + ++ T++LL R + Sbjct: 860 -RKLEMGQAVLKTQELLQRHS 879 >gi|326391983|ref|ZP_08213484.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200] gi|325991968|gb|EGD50459.1| alanyl-tRNA synthetase [Thermoanaerobacter ethanolicus JW 200] Length = 494 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 222/520 (42%), Positives = 323/520 (62%), Gaps = 39/520 (7%) Query: 4 VSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTT 63 ++ IR FL FF+ GH LPS SLIP ND +L+ NSGM P K FTG+E P + VTT Sbjct: 6 MNEIREKFLSFFESKGHLRLPSFSLIPKNDKSLLLINSGMAPLKPYFTGKETPPSKRVTT 65 Query: 64 VQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQR 123 Q+C+R D++ VG+T RH TFFEMLGNFSFG YFK+ AI AW+ +T+ L Sbjct: 66 CQRCIRT----PDIERVGKTARHGTFFEMLGNFSFGDYFKKEAIPWAWEFVTEILKLPVD 121 Query: 124 RLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECI 183 RL++++Y+ED+EAF++W KI GL ++I+R+ DNFW + TGPCGP SEI+FD+GE Sbjct: 122 RLWVSIYEEDDEAFEIWNKIVGLPPERIVRMGKEDNFWEIG-TGPCGPSSEIYFDRGEEK 180 Query: 184 PGGLP--GSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 G P G + +R+IE WNLVF QF + + LP +IDTGMGLER+AT++Q Sbjct: 181 GCGKPTCGVGCDCDRFIEFWNLVFTQFNKDERGNYHRLPNPNIDTGMGLERIATIMQGVD 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKY--EGNNIVNHRVIVDHLRSSSFLIADGILPANEGRGY 299 + +D+D+ + + ++ ++Y + V+ RVI DH+R +F+I+DGILP+NEGRGY Sbjct: 241 SIFDVDVIRGITNFVSKIAEVEYGKDAEKDVSLRVITDHIRGITFMISDGILPSNEGRGY 300 Query: 300 VLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFG 359 VLRR++RRA + +LLG + + ++ ++ G AYPE+I+ K I+ ++ E+ERF Sbjct: 301 VLRRLLRRAARHGKLLGINDTFLYKVVDSVIENYGEAYPEIIERKDYIKRIIKLEEERFK 360 Query: 360 KTLDRGLVLLDGVLSHL---GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDII 416 +T+D+GL +L +S L GK +L G AFKLYDT+G PLD+ ++IL G+ +D Sbjct: 361 ETIDQGLTILQDYISELKVQGK-TVLEGSKAFKLYDTYGFPLDLTKEILQEAGIT-VDEE 418 Query: 417 SFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVL 476 + + LE+QR RAR+ S + I+ +L + T+F+GYD + D KVL Sbjct: 419 GYTKELEKQRIRARSSRKEDNSLWEQDIYSTLGDI--KTKFVGYDT------YESDSKVL 470 Query: 477 CQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFD 516 AIV+ E+VEEA +G V ++ D Sbjct: 471 -----------------AIVKDEELVEEAEAGDDVSIILD 493 >gi|153810792|ref|ZP_01963460.1| hypothetical protein RUMOBE_01176 [Ruminococcus obeum ATCC 29174] gi|149833188|gb|EDM88270.1| hypothetical protein RUMOBE_01176 [Ruminococcus obeum ATCC 29174] Length = 683 Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust. Identities = 271/716 (37%), Positives = 396/716 (55%), Gaps = 51/716 (7%) Query: 198 IEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKTNNYDIDLFKHLIQASE 257 +E+WN VF QFE L + +IDTGMGLER+A V+Q+ + +D+D L Sbjct: 1 MEVWNNVFTQFENDGNGNYTTLKQKNIDTGMGLERLAVVVQDVDSIFDVDTICALRNLVC 60 Query: 258 QVTGMKYEGN--NIVNHRVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLL 315 ++ G +Y N + V+ R+I DH+RS++F+I+DGI+P NEGRGYVLRR++RRA + RLL Sbjct: 61 EIAGKEYGKNYQDDVSIRLITDHIRSATFMISDGIMPTNEGRGYVLRRLIRRAARHGRLL 120 Query: 316 GYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSH 375 G + L + + YPEL + K I + L +E+ +F KT+D+GL +L + Sbjct: 121 GIEGSFLAKLSAEVINGSKAGYPELEEKKEFIFKVLTNEENQFNKTIDQGLRILGDMEEE 180 Query: 376 L--GKDEILNGDVAFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARA-- 431 + ++ L+G+ AFKLYDT+G PLD+ ++IL +G GID F +A+EEQR +AR Sbjct: 181 IKAAGEKTLSGENAFKLYDTYGFPLDLTKEILEEKGY-GIDEEGFQKAMEEQRVKARTAR 239 Query: 432 ---HSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGV 488 + +G + ++I ++ T+F GYD L Sbjct: 240 EVTNYMGADATVYDEIDVNV-----TTKFEGYDHLT-----------------------Y 271 Query: 489 SSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK 548 S + + + EIV V GQK V +TPFYA GGQ GD G + + D K Sbjct: 272 DSEITVLTTEKEIVTSLVEGQKGTVFVKETPFYATMGGQEGDCGVIETANGKFVVEDTIK 331 Query: 549 KAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQN 608 G F H +E G+L T ++ L ++ Q RR NHSATHLL AL T+LGSHV Q Sbjct: 332 LRGGKFGHVGRMESGMLSTGETVTLKVNEQARRDTEKNHSATHLLQKALKTVLGSHVEQK 391 Query: 609 GSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALL 668 GS +TPD LRFD H + +T E+ E VN I LPVVT +M+ E+A SGA AL Sbjct: 392 GSLVTPDRLRFDFAHFQAMTPEEIAQTETLVNKEIQAALPVVTDVMDIEEAKKSGAMALF 451 Query: 669 GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITG 728 G KY+ +VRVVS+ G S LCGGTHV +T IML IVSE+ I AG+RRIEA+TG Sbjct: 452 GEKYDQKVRVVSM-----GDFSKELCGGTHVKNTSSIMLFKIVSEAGIAAGVRRIEALTG 506 Query: 729 QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLS- 787 + Q+ L+ +A LK + ++ + E + LQ + K +L L Sbjct: 507 NGVIEYYKKQETMLQEVAKALKAQPAEITEKITHLQAEVKSLQSENESLKSKLAQGSLGD 566 Query: 788 -CHKIAD---VNFMSHIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVT 843 ++I D V ++ + VD L+ + D L++KI G+++L ++ K ++L + T Sbjct: 567 VMNQIVDVKGVKLLAAKVEGVDMNGLRDLGDQLKEKIGEGVVVLAAVNG-GKVNLLAMAT 625 Query: 844 EDLLDR-FNAVDLARLSAKVLGGGGGGGRPHMAQSGGPNGNKADQAIAGVASFLKK 898 + +A +L + A ++ GGGGGGRP+MAQ+GG N KAD+A+ A L++ Sbjct: 626 DAAQKAGAHAGNLIKGVAAIV-GGGGGGRPNMAQAGGKNPEKADEAVKAAAGILEQ 680 >gi|114607605|ref|XP_518510.2| PREDICTED: alanyl-tRNA synthetase like [Pan troglodytes] Length = 985 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 291/942 (30%), Positives = 456/942 (48%), Gaps = 110/942 (11%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 46 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + + Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165 Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+I+ +D D +A +W + G+ A +++ +NFW M +TGPCGPC+EI Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + GG+ + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 225 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275 Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q G+ EG +RV+ DH+R+ S I Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKL 345 +DGI P G VLRRI+RRA+ ++ + P + L+P + +G AYPEL + Sbjct: 336 SDGIFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L GLPLD+++ Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455 Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 +L +G+ AG++ + A EE + RAR G +W + G Q G Sbjct: 456 MLEEKGVQLDSAGLERL----AQEEAQHRARQAEPVQKQG----LWLDV-HALGELQRQG 506 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGV--SSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 S + +P G + +++ + G V GQ+ ++ D+ Sbjct: 507 VPPTDDSP-----KYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDR 561 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE GGQ D G + G + V + + G F+ H V LR + L +D Sbjct: 562 TNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVD 621 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R H+ATHLL+ AL LG Q GS + P+ LR DVT P+T +L+++E Sbjct: 622 EAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVE 681 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSV 681 + V + + Q+ V E+ + A + G + D V + Sbjct: 682 NTVQEAVGQDEAVYM-----EEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDP 736 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDE 740 + S LC GTH+ TG + L I+ + + G R+ AITG++A ++ +GQ Sbjct: 737 ASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQSL 796 Query: 741 KLKSLASFLKVSQGNV-----------VGRVEE-----IWEEYRKLQLIH---------- 774 + A+ ++SQG+ +GR+ E + ++++ +L+ Sbjct: 797 AQEVKAATERLSQGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRAN 856 Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LKSVMDALQKKIQSGIIMLVG 829 A RKLQ+ ++ + + +I + S E L V+ L ++ S ++L+ Sbjct: 857 TAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLS 916 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 K V + + F A A +GG G R Sbjct: 917 PQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR 958 >gi|54020387|ref|YP_115693.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 232] gi|81603668|sp|Q601M2|SYA_MYCH2 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|53987560|gb|AAV27761.1| alanyl tRNA synthetase [Mycoplasma hyopneumoniae 232] Length = 883 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 255/774 (32%), Positives = 408/774 (52%), Gaps = 68/774 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +++FF++ H + S L+P ND +L++ NSG+ K+ FTG++ P + + Sbjct: 7 NEIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK +R ND++NVG T+RHHT FEMLGNFS G YFK AI A++ LTK+ LD + Sbjct: 67 QKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDPKN 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+IT YD D+ F+ WK + G S +K+I+ + NFW + + GPCGPCSEI+FD+G Sbjct: 123 LFITYYDGDDITFEKWKSL-GFSNEKLIKGSKKTNFWDLGQ-GPCGPCSEIYFDRGPKFD 180 Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 L + E +R+IEIWN+VF +F +Q L +IDTG G ER+ ++LQ+ Sbjct: 181 SRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYAPLKSKNIDTGAGFERIVSILQDGP 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGI 290 NYD DLF +I E+ T +Y+ N + R+I DH+R+ + I DG+ Sbjct: 241 TNYDTDLFLPIIAEIEKNTVFRYKIENYFLKKPRQTQINKSFRIIADHIRAITLAINDGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N RGY++RR++RRA + LG + P + L+ + + + +K+++ Sbjct: 301 QPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTLDYRFDIPTISKIIL--- 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+E F KTL+ G LL+ L + K++I V FKL++T+G P+++ ++IL + + Sbjct: 358 --NEEENFAKTLEIGYNLLESQLK-INKNQIKPVTV-FKLFETYGFPVELTKEILAEKNI 413 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFM 469 +Q +E Q ++ +G +K+ SL + K + FIGY Sbjct: 414 D----FDLSQLVEFQEKHSQISRAKKTTG-MQKVINSLTQIKAKISDFIGYH-------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T+ + + + + + E V E V+F++TPFYA AGGQ Sbjct: 461 ---------------THHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQKH 505 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G I + ++I DV K F+++ V +G + + L +D +NR L NHS Sbjct: 506 DQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSG 562 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL +L GS + Q GS D L FD ++ + E+KS+E+ +N I Q + Sbjct: 563 THLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKR 622 Query: 650 VTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + N E+A A L ++Y D + V ++ ++ LCGGTH+ +T + Sbjct: 623 KYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKF 679 Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 I+S S +GI RI A+T + L G+ +++ S S LK N + ++E Sbjct: 680 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALK----NKIKKIE 729 >gi|71893553|ref|YP_278999.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae J] Length = 880 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 255/774 (32%), Positives = 408/774 (52%), Gaps = 68/774 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +++FF++ H + S L+P ND +L++ NSG+ K+ FTG++ P + + Sbjct: 4 NKIRQLWIDFFRERNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLVNS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK +R ND++NVG T+RHHT FEMLGNFS G YFK AI A++ LTK+ LD + Sbjct: 64 QKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDPKN 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+IT YD D+ F+ WK + G S +K+I+ + NFW + + GPCGPCSEI+FD+G Sbjct: 120 LFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPKFD 177 Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 L + E +R+IEIWN+VF +F +Q L +IDTG G ER+ ++LQ+ Sbjct: 178 SRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQDGP 237 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGI 290 NYD DLF +I E+ T +Y+ N + R+I DH+R+ + I DG+ Sbjct: 238 TNYDTDLFLPIIAEIEKNTVFRYKIENYFLKEPRQTQINKSFRIIADHIRAITLAINDGV 297 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N RGY++RR++RRA + LG + P + L+ + + + +K+++ Sbjct: 298 QPSNLHRGYIIRRLIRRAYWNGKELGISHPFLYKLVEIVGKTLDYRFDIPTISKIIL--- 354 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+E F KTL+ G LL+ L + K++I V FKL++T+G P+++ ++IL + + Sbjct: 355 --NEEENFAKTLEIGYNLLESQLK-INKNQIKPVTV-FKLFETYGFPVELTKEILAEKNI 410 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFM 469 +Q +E Q ++ +G +K+ SL + K + FIGY Sbjct: 411 D----FDLSQLVEFQEKHSQISRAKKTTG-MQKVINSLTQIKAKISDFIGYH-------- 457 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T+ + + + + + E V E V+F++TPFYA AGGQ Sbjct: 458 ---------------THHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQKH 502 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G I + ++I DV K F+++ V +G + + L +D +NR L NHS Sbjct: 503 DQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSG 559 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL +L GS + Q GS D L FD ++ + E+KS+E+ +N I Q + Sbjct: 560 THLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKR 619 Query: 650 VTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + N E+A A L ++Y D + V ++ ++ LCGGTH+ +T + Sbjct: 620 KYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKF 676 Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 I+S S +GI RI A+T + L G+ +++ S S LK N + ++E Sbjct: 677 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALK----NKIKKIE 726 >gi|153217607|ref|ZP_01951288.1| alanyl-tRNA synthetase [Vibrio cholerae 1587] gi|124113445|gb|EAY32265.1| alanyl-tRNA synthetase [Vibrio cholerae 1587] Length = 593 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 247/628 (39%), Positives = 355/628 (56%), Gaps = 56/628 (8%) Query: 273 RVIVDHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE 332 RV+ DH+RS +FLI DG++P+NEGRGYVLRRI+RRA+ + LG L+ L Sbjct: 14 RVVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVRHGNKLGAQGAFFHKLVGPLAEV 73 Query: 333 MGSAYPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYD 392 MG+A EL + + L+E+ LR E+E FG+TLDRG+ +L+ L L ++L+G+ FKLYD Sbjct: 74 MGTAGVELKKQQALVEKVLRIEEENFGRTLDRGMSILNDALDQL-SGQVLDGETVFKLYD 132 Query: 393 THGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKY 452 T+G P D+ D+ RG + ID F QA+EEQR RAR +G + SL + Sbjct: 133 TYGFPADLTNDVARERGFS-IDEAGFEQAMEEQRQRARE------AGQFGTDYNSLIKSA 185 Query: 453 GATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVE 512 T+F GY RG S+V+ + +G V +G K Sbjct: 186 TNTEFCGYTASRGQ-----------------------SVVREMFVEGAEVSTLSAGDKAI 222 Query: 513 VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLV 572 +V D TPFYAE+GGQ GDTG D + D QK I HH ++ +G+L + Sbjct: 223 IVLDNTPFYAESGGQCGDTGVLKTDAGIFHVEDTQKLGNAI-AHHGVLAQGVLAIGDQVD 281 Query: 573 LTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAEL 632 +D + R +S+NHSATHLLH AL +LG HV+Q GS + + LRFD +H + +T AE+ Sbjct: 282 AIVDEKRRAAISLNHSATHLLHAALRKVLGEHVAQKGSLVRAETLRFDFSHLEAMTPAEI 341 Query: 633 KSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSA 692 K +E VN I N + T IMN ++A A GA AL G KY+D+VRV+S+ G S+ Sbjct: 342 KEVERLVNQEIRHNHNIETNIMNIDEAKAKGAMALFGEKYDDQVRVLSM-----GDFSTE 396 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQ----DEKLKSLASF 748 LCGG H S+TG+I L I+SE I AGIRRIEA+TG+ A +L Q D K+ +A+ Sbjct: 397 LCGGIHASNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDYLDVQQAQHDAKVSEMAAK 456 Query: 749 LKVSQGNVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE 808 K+ + +EI + KL AK L + +IA VN + ++ D+K Sbjct: 457 AKLLE-------KEIQQLKDKLA---AKESAGLINQ---VKQIAGVNVLVAQLNGADNKA 503 Query: 809 LKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGG 868 L+ ++D L+ ++ SGIIML ++ E K ++ VT DL ++ A +L + A + GG G Sbjct: 504 LRGMVDDLKNQLSSGIIMLGNVA-EGKVGLIAGVTNDLTNKVKAGELVNMVALQV-GGKG 561 Query: 869 GGRPHMAQSGGPNGNKADQAIAGVASFL 896 GGRP MAQ+GG + + A+ V +++ Sbjct: 562 GGRPDMAQAGGTDAHALPSALESVDAWI 589 >gi|148887013|sp|Q4AAD3|SYA_MYCHJ RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|144227505|gb|AAZ44288.2| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae J] Length = 883 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 255/774 (32%), Positives = 408/774 (52%), Gaps = 68/774 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +++FF++ H + S L+P ND +L++ NSG+ K+ FTG++ P + + Sbjct: 7 NKIRQLWIDFFRERNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK +R ND++NVG T+RHHT FEMLGNFS G YFK AI A++ LTK+ LD + Sbjct: 67 QKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDPKN 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+IT YD D+ F+ WK + G S +K+I+ + NFW + + GPCGPCSEI+FD+G Sbjct: 123 LFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPKFD 180 Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 L + E +R+IEIWN+VF +F +Q L +IDTG G ER+ ++LQ+ Sbjct: 181 SRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQDGP 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGI 290 NYD DLF +I E+ T +Y+ N + R+I DH+R+ + I DG+ Sbjct: 241 TNYDTDLFLPIIAEIEKNTVFRYKIENYFLKEPRQTQINKSFRIIADHIRAITLAINDGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N RGY++RR++RRA + LG + P + L+ + + + +K+++ Sbjct: 301 QPSNLHRGYIIRRLIRRAYWNGKELGISHPFLYKLVEIVGKTLDYRFDIPTISKIIL--- 357 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 +E+E F KTL+ G LL+ L + K++I V FKL++T+G P+++ ++IL + + Sbjct: 358 --NEEENFAKTLEIGYNLLESQLK-INKNQIKPVTV-FKLFETYGFPVELTKEILAEKNI 413 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFM 469 +Q +E Q ++ +G +K+ SL + K + FIGY Sbjct: 414 D----FDLSQLVEFQEKHSQISRAKKTTG-MQKVINSLTQIKAKISDFIGYH-------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T+ + + + + + E V E V+F++TPFYA AGGQ Sbjct: 461 ---------------THHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQKH 505 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G I + ++I DV K F+++ V +G + + L +D +NR L NHS Sbjct: 506 DQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSG 562 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL +L GS + Q GS D L FD ++ + E+KS+E+ +N I Q + Sbjct: 563 THLLFASLRQEFGSEIKQLGSDNNEDRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKR 622 Query: 650 VTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + N E+A A L ++Y D + V ++ ++ LCGGTH+ +T + Sbjct: 623 KYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKF 679 Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 I+S S +GI RI A+T + L G+ +++ S S LK N + ++E Sbjct: 680 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALK----NKIKKIE 729 >gi|72080540|ref|YP_287598.1| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448] Length = 880 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 256/774 (33%), Positives = 408/774 (52%), Gaps = 68/774 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +++FF++ H + S L+P ND +L++ NSG+ K+ FTG++ P + + Sbjct: 4 NKIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLVNS 63 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK +R ND++NVG T+RHHT FEMLGNFS G YFK AI A++ LTK+ LD + Sbjct: 64 QKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDPKN 119 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+IT YD D+ F+ WK + G S +K+I+ + NFW + + GPCGPCSEI+FD+G Sbjct: 120 LFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPKFD 177 Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 L + E +R+IEIWN+VF +F +Q L +IDTG G ER+ ++LQ+ Sbjct: 178 SRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQDGP 237 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGI 290 NYD DLF +I E+ T +Y+ N + R+I DH+R+ + I DG+ Sbjct: 238 TNYDTDLFLPIIAEIEKSTVFQYKIENYFLKEPRQTQINKSFRIIADHIRAITLAINDGV 297 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N RGY++RR++RRA + LG + P + L+ + + + IQ I + Sbjct: 298 QPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTLDYRFD--IQT---ISKI 352 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + +E+E F KTL+ G LL+ L + K++I V FKL++T+G P+++ ++IL + + Sbjct: 353 ILNEEENFAKTLEIGYNLLESQLK-INKNQIKPVTV-FKLFETYGFPVELTKEILAEKNI 410 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFM 469 +Q +E Q ++ +G +K+ SL + K + FIGY Sbjct: 411 D----FDLSQLVEFQEKHSQISRAKKTTG-MQKVINSLTQIKAKISDFIGYH-------- 457 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T+ + + + + + E V E V+F++TPFYA AGGQ Sbjct: 458 ---------------THHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQKH 502 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G I + ++I DV K F+++ V +G + + L +D +NR L NHS Sbjct: 503 DQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSG 559 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL +L GS + Q GS + L FD ++ + E+KS+E+ +N I Q + Sbjct: 560 THLLFASLRQEFGSEIKQLGSDNNENRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKR 619 Query: 650 VTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + N E+A A L ++Y D + V ++ ++ LCGGTH+ +T + Sbjct: 620 KYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKF 676 Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 I+S S +GI RI A+T + L G+ +++ S S LK N + ++E Sbjct: 677 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALK----NKIKKIE 726 >gi|74742244|sp|Q5JTZ9|SYAM_HUMAN RecName: Full=Alanyl-tRNA synthetase, mitochondrial; AltName: Full=Alanine--tRNA ligase; Short=AlaRS; Flags: Precursor gi|57209007|emb|CAI40747.1| alanyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens] gi|119624673|gb|EAX04268.1| alanyl-tRNA synthetase like [Homo sapiens] Length = 985 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 291/942 (30%), Positives = 458/942 (48%), Gaps = 110/942 (11%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 46 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + + Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165 Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+I+ +D D +A +W + G+ A +++ +NFW M +TGPCGPC+EI Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + GG+ + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 225 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275 Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q G+ EG +RV+ DH+R+ S I Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKL 345 +DGI P G VLRRI+RRA+ ++ + P + L+P + +G AYPEL + Sbjct: 336 SDGIFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L GLPLD+++ Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455 Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 +L +G+ AG++ + A EE + RAR G +W + G Q G Sbjct: 456 MLEEKGVQLDSAGLERL----AQEEAQHRARQAEPVQKQG----LWLDV-HALGELQRQG 506 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGV--SSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 S + +P G + +++ + G V GQ+ ++ D+ Sbjct: 507 VPPTDDSP-----KYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDR 561 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE GGQ D G + G + V + + G F+ H V LR + L +D Sbjct: 562 TNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVD 621 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R H+ATHLL+ AL LG Q GS + P+ LR DVT P+T +L+++E Sbjct: 622 EAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVE 681 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSV 681 + V + + Q+ V E+ + A + G + D V + Sbjct: 682 NTVQEAVGQDEAVYM-----EEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDP 736 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQD- 739 + S LC GTH+ TG + L I+ + + G R+ A+TG++A ++ +GQ Sbjct: 737 ASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSL 796 Query: 740 --------EKL----KSLASFLKVSQ--GNVVGRVE-EIWEEYRKLQLIH---------- 774 E+L + +A L++S+ G ++ VE + ++++ +L+ Sbjct: 797 AQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRAN 856 Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LKSVMDALQKKIQSGIIMLVG 829 A RKLQ+ ++ + + +I + S E L V+ L ++ S ++L+ Sbjct: 857 TAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLS 916 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 K V + + F A A +GG G R Sbjct: 917 PQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR 958 >gi|148887012|sp|Q4A8G4|SYA_MYCH7 RecName: Full=Alanyl-tRNA synthetase; AltName: Full=Alanine--tRNA ligase; Short=AlaRS gi|144575316|gb|AAZ53575.2| alanyl-tRNA synthetase [Mycoplasma hyopneumoniae 7448] Length = 883 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 256/774 (33%), Positives = 408/774 (52%), Gaps = 68/774 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 + IR +++FF++ H + S L+P ND +L++ NSG+ K+ FTG++ P + + Sbjct: 7 NKIRQLWIDFFREKNHFFIESKPLVPQNDDSLLWINSGVATLKDYFTGKKIPPSKRLVNS 66 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 QK +R ND++NVG T+RHHT FEMLGNFS G YFK AI A++ LTK+ LD + Sbjct: 67 QKALRT----NDIENVGLTSRHHTLFEMLGNFSIGDYFKTEAIDYAYEFLTKKLKLDPKN 122 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 L+IT YD D+ F+ WK + G S +K+I+ + NFW + + GPCGPCSEI+FD+G Sbjct: 123 LFITYYDGDDITFEKWKSL-GFSNEKLIKGSRKTNFWDLGQ-GPCGPCSEIYFDRGPKFD 180 Query: 185 ---GGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQEKT 241 L + E +R+IEIWN+VF +F +Q L +IDTG G ER+ ++LQ+ Sbjct: 181 SRGSELIKNEIENDRFIEIWNIVFSEFNNDGQQNYTPLKSKNIDTGAGFERIVSILQDGP 240 Query: 242 NNYDIDLFKHLIQASEQVTGMKYEGNNIV-----------NHRVIVDHLRSSSFLIADGI 290 NYD DLF +I E+ T +Y+ N + R+I DH+R+ + I DG+ Sbjct: 241 TNYDTDLFLPIIAEIEKSTVFQYKIENYFLKEPRQTQINKSFRIIADHIRAITLAINDGV 300 Query: 291 LPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEET 350 P+N RGY++RR++RRA + LG + P + L+ + + + IQ I + Sbjct: 301 QPSNLHRGYIIRRLIRRAYWNGKKLGISHPFLYKLVEIVGKTLDYRFD--IQT---ISKI 355 Query: 351 LRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDILCARGL 410 + +E+E F KTL+ G LL+ L + K++I V FKL++T+G P+++ ++IL + + Sbjct: 356 ILNEEENFAKTLEIGYNLLESQLK-INKNQIKPVTV-FKLFETYGFPVELTKEILAEKNI 413 Query: 411 AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKE-KYGATQFIGYDLLRGSKFM 469 +Q +E Q ++ +G +K+ SL + K + FIGY Sbjct: 414 D----FDLSQLVEFQEKHSQISRAKKTTG-MQKVINSLTQIKAKISDFIGYH-------- 460 Query: 470 KEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLG 529 T+ + + + + + E V E V+F++TPFYA AGGQ Sbjct: 461 ---------------THHIETKISFLANKDEEVAETNGENLSYVIFEKTPFYATAGGQKH 505 Query: 530 DTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSA 589 D G I + ++I DV K F+++ V +G + + L +D +NR L NHS Sbjct: 506 DQGWIIQNNSTIEILDVFKDK---FLNNIHVFKGKIVKNQPVFLKLDTKNRLNLERNHSG 562 Query: 590 THLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIAQNLPV 649 THLL +L GS + Q GS + L FD ++ + E+KS+E+ +N I Q + Sbjct: 563 THLLFASLRQEFGSEIKQLGSDNNENRLTFDFPLNRKPSDQEIKSVENRINSYINQKIKR 622 Query: 650 VTRIMNREDAIASGAAALL-GTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTGEIMLL 708 + N E+A A L ++Y D + V ++ ++ LCGGTH+ +T + Sbjct: 623 KYLVTNLEEAQKLNAIMTLEESEYMDPNSLRLVIFDK---ITTDLCGGTHIENTELLEKF 679 Query: 709 YIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLKSLASFLKVSQGNVVGRVE 761 I+S S +GI RI A+T + L G+ +++ S S LK N + ++E Sbjct: 680 TILSCQSKGSGIYRIRAVTSWNKYFEFLKGKIQEILSKISALK----NKIKKIE 729 >gi|6331226|dbj|BAA86584.1| KIAA1270 protein [Homo sapiens] Length = 986 Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust. Identities = 290/942 (30%), Positives = 458/942 (48%), Gaps = 110/942 (11%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 47 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 106 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + + Sbjct: 107 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 166 Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+I+ +D D +A +W + G+ A +++ +NFW M +TGPCGPC+EI Sbjct: 167 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 225 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + GG+ + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 226 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 276 Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q G+ EG +RV+ DH+R+ S I Sbjct: 277 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 336 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKL 345 +DG+ P G VLRRI+RRA+ ++ + P + L+P + +G AYPEL + Sbjct: 337 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 396 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L GLPLD+++ Sbjct: 397 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 456 Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 +L +G+ AG++ + A EE + RAR G +W + G Q G Sbjct: 457 MLEEKGVQLDSAGLERL----AQEEAQHRARQAEPVQKQG----LWLDV-HALGELQRQG 507 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGV--SSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 S + +P G + +++ + G V GQ+ ++ D+ Sbjct: 508 VPPTDDSP-----KYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDR 562 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE GGQ D G + G + V + + G F+ H V LR + L +D Sbjct: 563 TNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVD 622 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R H+ATHLL+ AL LG Q GS + P+ LR DVT P+T +L+++E Sbjct: 623 EAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVE 682 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSV 681 + V + + Q+ V E+ + A + G + D V + Sbjct: 683 NTVQEAVGQDEAVYM-----EEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDP 737 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQD- 739 + S LC GTH+ TG + L I+ + + G R+ A+TG++A ++ +GQ Sbjct: 738 ASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSL 797 Query: 740 --------EKL----KSLASFLKVSQ--GNVVGRVE-EIWEEYRKLQLIH---------- 774 E+L + +A L++S+ G ++ VE + ++++ +L+ Sbjct: 798 AQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRAN 857 Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LKSVMDALQKKIQSGIIMLVG 829 A RKLQ+ ++ + + +I + S E L V+ L ++ S ++L+ Sbjct: 858 TAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLS 917 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 K V + + F A A +GG G R Sbjct: 918 PQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR 959 >gi|38569417|ref|NP_065796.1| alanyl-tRNA synthetase, mitochondrial precursor [Homo sapiens] gi|124297995|gb|AAI31729.1| Alanyl-tRNA synthetase 2, mitochondrial (putative) [Homo sapiens] gi|208967617|dbj|BAG72454.1| alanyl-tRNA synthetase 2, mitochondrial [synthetic construct] Length = 985 Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust. Identities = 290/942 (30%), Positives = 458/942 (48%), Gaps = 110/942 (11%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 46 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + + Sbjct: 106 QKCVRAGGHHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165 Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+I+ +D D +A +W + G+ A +++ +NFW M +TGPCGPC+EI Sbjct: 166 RLWISYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + GG+ + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 225 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275 Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q G+ EG +RV+ DH+R+ S I Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKL 345 +DG+ P G VLRRI+RRA+ ++ + P + L+P + +G AYPEL + Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L GLPLD+++ Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455 Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 +L +G+ AG++ + A EE + RAR G +W + G Q G Sbjct: 456 MLEEKGVQLDSAGLERL----AQEEAQHRARQAEPVQKQG----LWLDV-HALGELQRQG 506 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGV--SSIVKAIVQQGEIVEEAVSGQKVEVVFDQ 517 S + +P G + +++ + G V GQ+ ++ D+ Sbjct: 507 VPPTDDSP-----KYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDR 561 Query: 518 TPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTID 576 T FYAE GGQ D G + G + V + + G F+ H V LR + L +D Sbjct: 562 TNFYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLRLGDQVQLHVD 621 Query: 577 YQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIE 636 R H+ATHLL+ AL LG Q GS + P+ LR DVT P+T +L+++E Sbjct: 622 EAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTPLTPEQLRAVE 681 Query: 637 DNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSV 681 + V + + Q+ V E+ + A + G + D V + Sbjct: 682 NTVQEAVGQDEAVYM-----EEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDP 736 Query: 682 EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQD- 739 + S LC GTH+ TG + L I+ + + G R+ A+TG++A ++ +GQ Sbjct: 737 ASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQARELGQSL 796 Query: 740 --------EKL----KSLASFLKVSQ--GNVVGRVE-EIWEEYRKLQLIH---------- 774 E+L + +A L++S+ G ++ VE + ++++ +L+ Sbjct: 797 AQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVKMLQRRAN 856 Query: 775 -AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LKSVMDALQKKIQSGIIMLVG 829 A RKLQ+ ++ + + +I + S E L V+ L ++ S ++L+ Sbjct: 857 TAIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLS 916 Query: 830 ISKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 K V + + F A A +GG G R Sbjct: 917 PQPMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR 958 >gi|300794887|ref|NP_001178140.1| probable alanyl-tRNA synthetase, mitochondrial [Bos taurus] Length = 983 Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust. Identities = 264/820 (32%), Positives = 414/820 (50%), Gaps = 113/820 (13%) Query: 3 NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57 +++R FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P Sbjct: 36 QAAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMA 95 Query: 58 -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLT 115 ++ V QKCVRAGG+H+DL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT Sbjct: 96 GFRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLT 155 Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + + + RL+++ + D E+ +W + G+ A +++ +NFW M +TG Sbjct: 156 QVYGIPEDRLWVSYFGGDPKAGLGPDLESRDIWLSL-GVPASRVLSFGPEENFWEMGDTG 214 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPC+EI +D + GG + +E+WNLVFMQ ++ LP+ +DTG Sbjct: 215 PCGPCTEIHYD----LAGG-----AGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTG 265 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDH 278 MGLER+ VLQ + + YD DLF L+ A Q G EG +RV+ DH Sbjct: 266 MGLERLVAVLQGRLSTYDTDLFSPLLDAIHQGCGAPPYSGRIGAADEGRTDTAYRVVADH 325 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337 +R+ S IADG+ P G VLRRI+RRA+ ++ + P + L+P + +G AY Sbjct: 326 IRTLSVCIADGVSPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAY 385 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHG 395 PEL ++ I + ++ F +L RG +++ L LG ++ +VA+ L G Sbjct: 386 PELRRSSAQIASLVSEDEAAFLASLQRGRRVIERTLKRLGPSDVFPAEVAWSLSLSGNLG 445 Query: 396 LPLDIMQDILCARGL----AGIDIISFNQA---------LEEQRSRARAHSLG----LGS 438 LPLD+++ +L +G+ AG++ ++ +A ++EQ R H+LG G Sbjct: 446 LPLDLVELMLEEKGVPLDTAGLERLAQEEAQHRALQAEPVQEQGLRLNVHALGELQRRGV 505 Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498 T+ KY Y L G + + C+ + +++ + Sbjct: 506 PPTDD-----SPKY------SYSLQPGGSY----KFGTCE----------AQVLQLYTED 540 Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHH 557 G V GQ ++ D+T FYAE GGQ D G + G + + V + + G F+ H Sbjct: 541 GTAVASIGDGQHCGLLLDKTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILH 600 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 +V LR + L +D R H+A HLL+ AL +LG Q GS + P+ L Sbjct: 601 EVVAPERLRVGDQVQLHVDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERL 660 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677 RFDV P+T +L+++E V + + R++A+ AL T + +R Sbjct: 661 RFDVATQAPLTPEQLRAVEVTVQ-----------KAVGRDEAVYMEEVALARTAHVPGLR 709 Query: 678 VVSVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIVSESSI 716 + Y D +H+S LC GTH+ TG I L I+ E + Sbjct: 710 SLDEVYPDPVRVVSVGVPVAHALDPASQAALHTSVELCCGTHLLRTGAIGDLVIIGERQL 769 Query: 717 RAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGN 755 GI R+ A+ G++A ++ +GQ + A+ ++SQG+ Sbjct: 770 VKGITRLLAVNGEQAQQAREVGQRLAQEVEAAAARLSQGS 809 >gi|240047430|ref|YP_002960818.1| alanyl-tRNA synthetase [Mycoplasma conjunctivae HRC/581] gi|239985002|emb|CAT04995.1| Alanyl-tRNA synthetase [Mycoplasma conjunctivae] Length = 884 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 294/912 (32%), Positives = 443/912 (48%), Gaps = 95/912 (10%) Query: 2 SNVSS--IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQ 59 +N+SS IR +L+FF H ++ S SLIP NDP+L++ NSG+ K FTG ++P + Sbjct: 3 TNLSSKQIRQLWLDFFASKNHLIVESKSLIPQNDPSLLWINSGVATLKEYFTGHKQPPSK 62 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 +T QK +R ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ A++ L Sbjct: 63 RITNSQKAIRT----NDIENVGITSRHHTMFEMLGNFSIGDYFKKEAIEFAFEFLVYVLK 118 Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +D +LYIT + +D E K W+ + G+ D +I NFW + GPCGPCSEI++D+ Sbjct: 119 MDLDKLYITYFSDDLETKKYWQDL-GIQDDHLIAGNQKTNFWDIG-LGPCGPCSEIYYDR 176 Query: 180 GECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATV 236 GE L + E +R+IEIWN+VF +F + L +IDTG G ER+ ++ Sbjct: 177 GEKFDSRGIELLKNDIENDRFIEIWNIVFSEFNNDGEGNYTPLVSKNIDTGAGFERIVSI 236 Query: 237 LQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH-----------RVIVDHLRSSSFL 285 LQ N+D DLF +I E+++ KY+ +N +VI DH+RS Sbjct: 237 LQNGPTNFDTDLFLPIILEVEKLSDFKYDVDNYFKKDKKQTKINTYFKVIADHIRSVVNA 296 Query: 286 IADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 I DG+ P+N RGY++RR++RRA R LG + + L+ + + + E AK+ Sbjct: 297 INDGVEPSNTHRGYIIRRLIRRAFRMGRKLGIKQAFLYKLVGVVKSSLIYDIDEKKVAKI 356 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDIL 405 ++ E+E F KT++ G +LL+ GK+ N ++ FK+++T+G P+++ Q+IL Sbjct: 357 -----IKKEEELFEKTIENGEILLNREFEKNGKN--FNIEIVFKMFETYGFPIELTQEIL 409 Query: 406 CARGLA-GIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLR 464 +GL D I + SR + H LG+ KE ++F+GY+ L Sbjct: 410 EEKGLKLDFDKIEELKEKHANLSRGKQH-LGMNLAINSLALIKGKE----SEFVGYEHLE 464 Query: 465 GSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEA 524 + K+L L N S + Q+ EI +FD+TPFYA Sbjct: 465 QTA------KILF------LANNESLL--ETTQEDEI---------SYAIFDKTPFYATG 501 Query: 525 GGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLS 584 GGQ D G I +++I V K + ++ V +G+L + L +D NRR L Sbjct: 502 GGQKHDQGLIIQGDNKIEIIKVFKDK---YFNNIHVFKGVLNKNEEVKLIVDEANRRNLE 558 Query: 585 INHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDIIA 644 NHSATHLL AL G + Q GS + L FD SK T EL +E VN I Sbjct: 559 RNHSATHLLFKALREQFGLQIKQLGSDNNENRLTFDFPVSKKPTDEELAKVESLVNFYIQ 618 Query: 645 QNLPVVTRIMN---REDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSS 701 + P + +N +E + L +Y D V V ++ G+ ++ LCGGTH+++ Sbjct: 619 SSTP--RKYLNTTIKEAEKLNAIMTLEEAEYMDPKNVRLVHFQ--GI-TTDLCGGTHIAN 673 Query: 702 TGEIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGN------ 755 T I I+S + +G+ RI AIT + Q + K L S + Q N Sbjct: 674 TSLIQKFKIISCQNKGSGVFRIRAITTLEKYYDYLTQQVEQKEL-SLAAIEQKNRQFDPF 732 Query: 756 ---VVGRVE--EIWEEYRKLQLIHAK-RKLQLNVED----------LSCHKIADVNFMSH 799 V RV EI L + AK LQL + KI N Sbjct: 733 YKMQVHRVNDLEILNNNLDLAIKQAKLDTLQLIKNKKKEEKTTDFIFNQEKIFTFNNQDF 792 Query: 800 IISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLDRFNAVDLARLS 859 I + K++ S A + + I V + + +L+VV+ N++D+ Sbjct: 793 YIDFITDKQINSKQLAATLREEHANITFVLLQEMAAQKILVVVSSKTN---NSLDILNKI 849 Query: 860 AKVLGGGGGGGR 871 K+ G GGG + Sbjct: 850 NKIFDGKGGGNK 861 >gi|297489033|ref|XP_002697304.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial-like [Bos taurus] gi|296474486|gb|DAA16601.1| alanyl-tRNA synthetase 2, mitochondrial-like [Bos taurus] Length = 983 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 264/820 (32%), Positives = 414/820 (50%), Gaps = 113/820 (13%) Query: 3 NVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV---- 57 +++R FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P Sbjct: 36 QAAAVRDAFLSFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMA 95 Query: 58 -YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLT 115 ++ V QKCVRAGG+H+DL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT Sbjct: 96 GFRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLT 155 Query: 116 KEFDLDQRRLYITVYDEDE--------EAFKLWKKISGLSADKIIRITTNDNFWSMAETG 167 + + + + RL+++ + D E+ +W + G+ A +++ +NFW M +TG Sbjct: 156 QVYGIPEDRLWVSYFGGDPKAGLGPDLESRDIWLSL-GVPASRVLSFGPEENFWEMGDTG 214 Query: 168 PCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTG 227 PCGPC+EI +D + GG + +E+WNLVFMQ ++ LP+ +DTG Sbjct: 215 PCGPCTEIHYD----LAGG-----AGAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTG 265 Query: 228 MGLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKY---------EGNNIVNHRVIVDH 278 MGLER+ VLQ + + YD DLF L+ A Q G EG +RV+ DH Sbjct: 266 MGLERLVAVLQGRLSTYDTDLFSPLLDAIHQGCGAPPYSGRIGAADEGRTDTAYRVVADH 325 Query: 279 LRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAY 337 +R+ S IADG+ P G VLRRI+RRA+ ++ + P + L+P + +G AY Sbjct: 326 IRTLSVCIADGVSPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDAY 385 Query: 338 PELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAF--KLYDTHG 395 PEL ++ I + ++ F +L RG +++ L LG ++ +VA+ L G Sbjct: 386 PELRRSSAQIASLVSEDEAAFLASLQRGRRVIERTLKRLGPSDVFPAEVAWSLSLSGNLG 445 Query: 396 LPLDIMQDILCARGL----AGIDIISFNQA---------LEEQRSRARAHSLG----LGS 438 LPLD+++ +L +G+ AG++ ++ +A ++EQ R H+LG G Sbjct: 446 LPLDLVELMLEEKGVPLDTAGLERLAQEEAQHRALQAEPVQEQGLRLNVHALGELQRRGV 505 Query: 439 GTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQ 498 T+ KY Y L G + + C+ + +++ + Sbjct: 506 PPTDD-----SPKY------SYSLQPGGSY----KFGTCE----------AQVLQLYTED 540 Query: 499 GEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHH 557 G V GQ ++ D+T FYAE GGQ D G + G + + V + + G F+ H Sbjct: 541 GTAVASIGDGQHCGLLLDKTNFYAEQGGQASDRGYLVLVGQQDVLFPVARAQVCGGFILH 600 Query: 558 AIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGL 617 +V LR + L +D R H+A HLL+ AL +LG Q GS + P+ L Sbjct: 601 EVVAPERLRVGDQVQLHVDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERL 660 Query: 618 RFDVTHSKPITSAELKSIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRVR 677 RFDV P+T +L+++E V + + R++A+ AL T + +R Sbjct: 661 RFDVATQAPLTPEQLRAVEVTVQ-----------KAVGRDEAVYMEEVALARTAHVPGLR 709 Query: 678 VVSVEYED--------------------GGVHSSA-LCGGTHVSSTGEIMLLYIVSESSI 716 + Y D +H+S LC GTH+ TG I L I+ E + Sbjct: 710 SLDEVYPDPVRVVSVGVPVAHALDPASQAALHTSVELCCGTHLLRTGAIGDLVIIGERQL 769 Query: 717 RAGIRRIEAITGQRA-RSHLMGQDEKLKSLASFLKVSQGN 755 GI R+ A+ G++A ++ +GQ + A+ ++SQG+ Sbjct: 770 VKGITRLLAVNGEQAQQAREVGQRLAQEVEAAAARLSQGS 809 >gi|284931130|gb|ADC31068.1| alanyl-tRNA synthetase [Mycoplasma gallisepticum str. F] Length = 902 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 269/929 (28%), Positives = 438/929 (47%), Gaps = 109/929 (11%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQAVTTV 64 S IR +L+FF+ HE++ S SL+P NDP+L++ N+G+ K F+G+E P+ + Sbjct: 8 SQIRQIWLDFFKSKKHEIIESKSLVPINDPSLLWINAGVATLKKYFSGEENPINPRLANS 67 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLDQRR 124 Q+C+RA ND++NVG T+RHHT FEMLGNFS G YFK+ AI+ ++LLTK + L++ + Sbjct: 68 QRCIRA----NDIENVGVTSRHHTVFEMLGNFSIGDYFKKEAIEFGYELLTKFYGLNKDK 123 Query: 125 LYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQGECIP 184 LYIT+Y++D +AF W G+ IIR NFW + +GPCGP +EI++D+GE Sbjct: 124 LYITIYEDDNDAFNYWVD-QGIDPHHIIRCDKKRNFWDLG-SGPCGPSTEIYYDRGEKYD 181 Query: 185 GGLPGSSE-----EGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVLQE 239 G E +RYIE+WN+VF QF L + +IDTG LER A +LQ+ Sbjct: 182 PNKLGEKLFFEDIENDRYIEVWNIVFSQFNNTGNNNYTELVRKNIDTGASLERFACILQD 241 Query: 240 KTNNYDIDLFKHLIQASEQVTGMKYEGNNIVNH---------------RVIVDHLRSSSF 284 NYD DL+ +I+ E+ T KY +V+H RVI DHL+ F Sbjct: 242 VPTNYDTDLYLPIIRTIEKHTNHKY----VVDHYFSKDQSEQDVLRAFRVIADHLKCGVF 297 Query: 285 LIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAK 344 IADG+LP + R Y++R+++RRA YA+ L ++ + + + LI K Sbjct: 298 AIADGVLPGAKDRDYIIRKLLRRAFVYAKKLNAKPEYLVETINVIINTYSDFFKYLIPNK 357 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 ++ + + +E F KTLD G + + + + ++ FKL +T+G PLD++++ Sbjct: 358 EIVIQAITNEANNFTKTLDYGFEIFNEAKTTNN----ITAEMIFKLVETYGFPLDLIKE- 412 Query: 405 LCARGLAGIDIISFNQALEEQR--SRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDL 462 L A +D+ F + ++ + S+A +GL + F + K+ YD Sbjct: 413 LSAEAKIKLDLDGFEELFKKHQEISKANNGEVGLKKQNENLLKFETQSKF------YYD- 465 Query: 463 LRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYA 522 N + + V AI + + VF+ TP YA Sbjct: 466 ----------------------KNNIKTKVVAIFDDKFNPVDQIEVGSGWAVFESTPIYA 503 Query: 523 EAGGQLGDTGCAIGDG-IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRR 581 +GGQ D G + G + + +V K +HH ++ + L D R+ Sbjct: 504 TSGGQRFDEGYCLKKGNLVVHFDNVIKAPNKQHLHH--FKKASFWLNEKVELMHDENWRK 561 Query: 582 QLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVND 641 + NHS H+LH L + + Q+G+ + D + +T +L IE + Sbjct: 562 LVRKNHSLEHILHATLKNTINETIKQSGAFKSAAKATLDFNYPTKLTDEDLDKIETKMRQ 621 Query: 642 IIAQNLPVVTRIMNREDAIASGAAALLGTKY--NDRVRVVSVEYEDGGVHSSALCGGTHV 699 +IA +PV ++ E + A A +Y ++ +RV+ + G +S LCGGTHV Sbjct: 622 VIADKIPVTVHHVDYETSQKMNAIAYFEEEYKKHELLRVIKI-----GDYSVELCGGTHV 676 Query: 700 SSTGEIMLLYIVSESSIRAGIRRIEAITG-QRARSHLMGQDEKLK-------------SL 745 +T EI +I S+ AG RIE I+ + ++L+ + ++K L Sbjct: 677 DNTKEIEECFITDLYSLGAGRWRIEIISSYETIYNYLVDKQNEIKQEKNHMFNELGNYDL 736 Query: 746 ASFLKVSQG--------------NVVGRVEEIWEEYRKLQLIHAKRKLQLNVEDLSCHKI 791 +L S+ + E+I EEY+ ++L K+K + + K+ Sbjct: 737 THYLDFSKKLHSFNLPTSIKDLRKTLRAFEQIKEEYKAIKLELDKKKTKDRANQIK--KL 794 Query: 792 ADVNFMSHIISEVDSKELKSVMDALQKKI--QSGIIMLVGISKEKKASVLIVVTEDLLDR 849 A N I+ KE + ++ + + I+K ++ ++ D+ Sbjct: 795 ALDNLEHKIVLLFFDKEEHKALSIAHSELVNEKPDHLFFFINKSDNKINYLIGIKNATDK 854 Query: 850 FNAVDLARLSAKVLGGGGGGGRPHMAQSG 878 NA L V+ G GGG+ + AQ G Sbjct: 855 LNA-KLLIDKVNVMFGAKGGGKQNFAQGG 882 >gi|68074667|ref|XP_679250.1| alanine--tRNA ligase [Plasmodium berghei strain ANKA] gi|56499954|emb|CAH95111.1| alanine--tRNA ligase, putative [Plasmodium berghei] Length = 1076 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 258/839 (30%), Positives = 423/839 (50%), Gaps = 126/839 (15%) Query: 7 IRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQ-----EKPVYQAV 61 +R F+ +F+ H ++ S+S+IP ND TL+FTN+GM FK IF G + + Sbjct: 53 VRNNFINYFKNKDHTIVDSASVIPYNDNTLLFTNAGMNQFKKIFLGNVDKNSDLGKLKRC 112 Query: 62 TTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDLD 121 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN+SFG YFKE +I+ AWDLLT + ++ Sbjct: 113 VDTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDYFKEESIEYAWDLLTNVYKIN 172 Query: 122 QRRLYITVYDEDE---------EAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPC 172 RLY+T + D+ EA K+W K L +I+ DNFW MAETGPCGPC Sbjct: 173 PNRLYVTYFGGDKNLPSCPPDLEAKKIWSKY--LDEKRILPFGMKDNFWEMAETGPCGPC 230 Query: 173 SEIFFDQGECIPGGLPGS---SEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMG 229 SEI +D+ G S +++ +EIWN+VFMQ+ + + LP IDTGMG Sbjct: 231 SEIHYDR----IGNRDASDLVNKDDPSVLEIWNIVFMQYNKDENKNMNKLPSPCIDTGMG 286 Query: 230 LERMATVLQEKTNNYDIDLFKHLIQASEQVTG---MKYEGNNIVN----------HRVIV 276 LER+ ++LQ +NYD DLF + + +++ Y+G +N +RVI Sbjct: 287 LERITSILQNVQSNYDTDLFTPIFKQIKEIFNDNIPSYQGK--INEQDPDKIDYAYRVIS 344 Query: 277 DHLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMM---HLLPALCTEM 333 DH+R ++ I+DG +P+NEGR YV+RRI+RRA+ + + + ++ L+ ++C + Sbjct: 345 DHIRCATIAISDGCIPSNEGRNYVIRRIIRRAIRVGKQVFNIKSNVLWFYKLVDSVCKIL 404 Query: 334 GSAYPELIQAKLL--IEETLRSEDERFGKTLDRGLVLLDGVLSHL-----GKDEILNGDV 386 G+ + +L + + I+ + E+ F KTL++G+ + ++ + + +G Sbjct: 405 GNCFKDLQNEEKVNYIKNVIMQEELIFNKTLEKGVDQFNKIIKRCHQNPSNNNNLFSGKD 464 Query: 387 AFKLYDTHGLPLDIMQDILCARGLAGIDIISFNQALEEQRSRARAHSLGLGSG---TTEK 443 AF LY ++G P+D+++ I+C +++ FN ++ + + ++ + EK Sbjct: 465 AFDLYTSYGFPIDLIE-IMCEEKSVKLNMEEFNTLFKKHQLVSDTNNFKINKVIDLPVEK 523 Query: 444 IWFSLKEKYGATQFIGY------DLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQ 497 +K KY I Y + K +E++ L K + + + + I+ Sbjct: 524 A-HDIKCKYNVLPTIDYHKYNWNNTFEVPKSKEENKNNLRLKSSVQIIYD-GNFLDEIMH 581 Query: 498 QGEIVEEAVSGQKVE-------VVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKA 550 + +E +S KVE ++ +T FY E GGQ+ DTG + ++ Q+ +VQK + Sbjct: 582 TDDEAKEPLSCVKVENKQKKYALILKETNFYYENGGQIYDTGFIQNESMKFQVLNVQKMS 641 Query: 551 EGIFVHHAIVERGILRTEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVS---- 606 + I +H ++ G ++ + +D++ R+ ++ NH+ATHLL+ +L +L ++ Sbjct: 642 DYI-LHIGVLLSGCIKKNDIIEAVVDFERRKLIACNHTATHLLNFSLRKVLADQMNQKKN 700 Query: 607 ------------------------------------------QNGSCITPDGLRFDVTHS 624 Q GS + + LRFD + Sbjct: 701 KCDNKDENKKVSLEDSNTIKNKLEENSSCNNNSNGSSIFNCEQKGSLVDDEKLRFDFSFI 760 Query: 625 KPITSAELKSIEDNVNDIIAQNLPVVTRIMN-REDAIASGAAALLGTKYNDRVRVVSVEY 683 + I + L IE +N+I+ + L V + M+ E G A+ Y+D+V VV + Sbjct: 761 QNINTDVLNKIETEINNIVKEELDVSVKTMDLTESKKIKGIRAIFEEDYSDKVNVVFISK 820 Query: 684 EDGGVHSS-----------ALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA 731 V ++ LCGGTH+ +T I I SE SI GI RI A+T ++A Sbjct: 821 NADNVLNNLDVNYTYLCSIELCGGTHIGNTKYIKEFIITSEESIGKGIHRINAVTNKKA 879 >gi|269114905|ref|YP_003302668.1| Alanyl-tRNA synthetase (Alanine-tRNA ligase, AlaRS) [Mycoplasma hominis] gi|268322530|emb|CAX37265.1| Alanyl-tRNA synthetase (Alanine-tRNA ligase, AlaRS) [Mycoplasma hominis ATCC 23114] Length = 887 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 283/922 (30%), Positives = 465/922 (50%), Gaps = 115/922 (12%) Query: 1 MSNVSSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPVYQA 60 M IR +L+FF+ GH ++PS SLIP NDP+L++ NSG+ K+ F+G++ P + Sbjct: 1 MLTSKEIRKMWLDFFKSKGHLVVPSKSLIPQNDPSLLWINSGVATLKDYFSGKKIPPAKR 60 Query: 61 VTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFDL 120 +T QK +R ND++NVG T RHHTFFEMLGNFS G YFK+ AI ++ + L Sbjct: 61 ITNSQKSIRT----NDIENVGITARHHTFFEMLGNFSIGDYFKKEAIAFGYEFIFNVLKL 116 Query: 121 DQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQG 180 +++ +YIT Y ED++ + W +G+ +I+ + + NFW + + GPCGP +EIF+D+G Sbjct: 117 NKQNIYITYYSEDKDTYNYWIS-NGIDPSHMIKGSRDTNFWDVGQ-GPCGPDTEIFYDRG 174 Query: 181 ECIPG---GLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMATVL 237 L + E +RYIEIWN+VF QF + L +IDTG GLER+ ++L Sbjct: 175 TKYDTRGIELLENDIENDRYIEIWNIVFSQFNNDGENNYTELATKNIDTGAGLERITSIL 234 Query: 238 QEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI-----------VNHRVIVDHLRSSSFLI 286 Q+ N+D DLF +I A+E++T Y+ NN ++I DH+R+S I Sbjct: 235 QDAPTNFDTDLFLPIIHATEKLTNKHYDINNYFTKEPIQMKINTQFKIIADHIRASVNAI 294 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTE--MGSAYPELIQAK 344 +DG+ P+N GRGY++RR++RRA LG T+ ++ L + + + E ++ Sbjct: 295 SDGVKPSNIGRGYIIRRLIRRAYRAGISLGITQKAFLYELVQIVKDSLIYDIDVEEVKKV 354 Query: 345 LLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPLDIMQDI 404 +L EE L F KT++ G LL+ + K+ ++ +AFK++DT+G P+++ ++I Sbjct: 355 ILDEENL------FAKTINEGEKLLN---QEIEKNGTIDVKIAFKMFDTYGFPIELTREI 405 Query: 405 LCARGLAGIDIISFNQALEEQRSRARA----------HSLGLGSGTTEKIWFSLKEKYGA 454 L + + ID+ FN+ L++ + ++R +SL L T+KI Sbjct: 406 LQEKNI-DIDMNEFNEFLKQHQEKSRGNIEAGMQKVINSLSL---ITDKI---------- 451 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVV 514 ++F+GYD + +S + ++ E + A + ++ Sbjct: 452 SEFVGYDHTK-----------------------TTSKILYLLNSEEKINNAGEDEVSYLI 488 Query: 515 FDQTPFYAEAGGQLGDTGCAIGDGIRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLT 574 D+TPFYA +GGQ D G + R+++ DV K + +H V +G + + + Sbjct: 489 LDKTPFYATSGGQNHDEGYILQGNNRIEVLDVFKDK---YWNHVHVVKGKINSNEPVQCF 545 Query: 575 IDYQNRRQLSINHSATHLLHHAL-STILGSHVSQNGSCITPDGLRFDVTHSKPITSAELK 633 +D R + NHS+THL+ AL T + Q GS IT + FD T E+K Sbjct: 546 VDEDKRINFARNHSSTHLMFSALRETYPNEIIKQLGSNITYEHFTFDFGLDHRPTKEEIK 605 Query: 634 SIEDNVNDIIAQNLPVVTRIMNREDAIASGAAALLG-TKYNDRVRVVSVEYEDGGVHSSA 692 IE + IA+++ I + + A GA + ++Y+D + VE+E G+ + Sbjct: 606 LIEHKMRQYIARDVKRNYIITSLKKAEEMGAYMTIDESEYHDANYIRVVEFE--GI-TKD 662 Query: 693 LCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQR-ARSHLMGQ-DEKLKSLASFLK 750 LCGGTHV +G I IV+ S GI R+ +T R +L+ + EK K L + +K Sbjct: 663 LCGGTHVPHSGIIEDFKIVAVDSKGTGIYRLRVVTSYDLVRKYLLSEIQEKQKILDTLIK 722 Query: 751 VSQ---------------GNVVGRVEEIWEEYRKLQ--LIHAKRKL----QLNVEDLSCH 789 +Q N +EE+ EEY K + L + R L Q DLS + Sbjct: 723 NNQKLNEGYNFKYTKEIISNKTSDLEELLEEYDKCEEKLRNDYRALLKQKQSEDVDLSLY 782 Query: 790 KIADVNFMS-HIISEVDSKELKSVMDALQKKIQSGIIMLVGISKEKKASVLIVVTEDLLD 848 +N ++ ++ +K V +L++ II++ ++K K+ S V Sbjct: 783 NYETINDKKVFLLINIEQSLIKKVSISLREANPDSIIII--LNKSKQDSYYFAVAS---K 837 Query: 849 RFNAVDLARLSAKVLGGGGGGG 870 ++++ + + KVL GGG Sbjct: 838 KYDSNAIFKNLGKVLNIHGGGN 859 >gi|159473717|ref|XP_001694980.1| predicted protein [Chlamydomonas reinhardtii] gi|158276359|gb|EDP02132.1| predicted protein [Chlamydomonas reinhardtii] Length = 750 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 258/762 (33%), Positives = 380/762 (49%), Gaps = 66/762 (8%) Query: 5 SSIRTTFLEFFQKNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKP-----VYQ 59 S R F EFF+ GH SSS++P NDPTL+FTN+GM FK +F G P + Sbjct: 3 SRTRAAFNEFFETKGHTYWASSSVVPHNDPTLLFTNAGMNQFKPVFLGTVDPNSDMGKMK 62 Query: 60 AVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGGYFKERAIQLAWDLLTKEFD 119 QKC+RAGGKHNDLD+VG+ HHTFFEMLGN + G Y +A+ L Sbjct: 63 RACNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNCACGRYPCTQALLLIAHARLPLAL 122 Query: 120 LDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGP 171 L RLY T + D+EA ++W + L +++ +NFW M + GPCGP Sbjct: 123 LPAERLYATYFRGDPAMGLPADDEAREIWLRF--LPESRVLPYGNKENFWEMGDQGPCGP 180 Query: 172 CSEIFFDQGECIPGGLPGSS---EEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGM 228 C+EI FD+ GG ++ + +EIWN VF+QF ++ LP +DTGM Sbjct: 181 CTEIHFDR----IGGRDAAALVNADDPNVLEIWNNVFIQFNREPDGSLKSLPAKHVDTGM 236 Query: 229 GLERMATVLQEKTNNYDIDLFKHLIQASEQVTGMKYEGNNI---------VNHRVIVDHL 279 GLER+ +VLQ K +NY DLF + A + VTG + + I + +RV+ DH+ Sbjct: 237 GLERITSVLQGKMSNYATDLFGPIFDAIQAVTGARDYTDKIGKDDSDGVDMAYRVVADHI 296 Query: 280 RSSSFLIADGILPANEGRGYVLRRIMRRAMCYAR-LLGYTEPLMMHLLPALCTEMGSAYP 338 R+ SF IADG P NEGR YVLRRI+RRA+ Y R LG E L+ + G +P Sbjct: 297 RTLSFSIADGARPGNEGRDYVLRRILRRAVRYGREKLGAKEGFFAGLVDVVVAHFGGFFP 356 Query: 339 ELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTHGLPL 398 EL++ + I LR E+ F +TL +G+ + D + G AF L+DT G P+ Sbjct: 357 ELVKQRDTIFGVLREEEAAFSRTLIKGIERFKKAAAG-ATDGKIPGPEAFVLWDTFGFPV 415 Query: 399 DIMQDILCARGLAGIDIISFNQALEEQRSR--ARAHSLGLGSG-TTEKIWFSLKEKY-GA 454 D+ Q + RG+A +D+ + A+ E R + G G + + L Y GA Sbjct: 416 DLTQLMAEERGMA-VDMAGYEAAMAEAREKMGETGRHGGFHHGVASSMVCAKLHGTYTGA 474 Query: 455 TQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIV--EEAVSGQKVE 512 T + + K VS+ V AI+ G + G V Sbjct: 475 TVNSIPISPPPPDWQNDAPKYGSAD--------VSAKVLAILTSGGFAAGSQEAEGGLVG 526 Query: 513 VVFDQTPFYAEAGGQLGDTGCAI-----GDGIRLQITDVQKKAEGIFVHHA-IVERGILR 566 +V D T FYAE+GGQ + ++ A G +H + E G + Sbjct: 527 LVLDTTSFYAESGGQHFSPSPELLTKFSSPSTSPELLTNPTVAAGYVLHVGEVAEGGQVA 586 Query: 567 TEMSLVLTIDYQNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKP 626 ++ +++DY+ R + NH+ TH+L++AL ++LG HV Q GS + PD LRFD +++ P Sbjct: 587 VGEAVTVSVDYERRGLIKPNHTFTHVLNYALKSVLGDHVDQKGSIVLPDKLRFDFSNAGP 646 Query: 627 ITSAELKSIEDNVNDIIAQNLPVV-TRIMNREDAIASGAAALLGTKYNDRVRVVSV---- 681 + +A+L ++E + +A +PV T + + +G A+ G Y D VRVVS+ Sbjct: 647 VEAAQLAAVEKICREAVAAAMPVFGTEVPLAQAKSINGLRAVFGEVYPDPVRVVSIGRSV 706 Query: 682 -------EYEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSI 716 + + +S CGGTH+++T E ++SE I Sbjct: 707 ADLLADPKADANAAYSIEFCGGTHLANTQEAEAFALLSEEGI 748 >gi|297678244|ref|XP_002816983.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial-like [Pongo abelii] Length = 985 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 260/793 (32%), Positives = 404/793 (50%), Gaps = 75/793 (9%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 46 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG HNDL++VG+ HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + + Sbjct: 106 QKCVRAGGHHNDLEDVGQDLSHHTFFEMLGNWAFGGEYFKEEACNMAWELLTQVYGIPEE 165 Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+++ +D D +A +W + G+ A +++ +NFW M +TGPCGPC+EI Sbjct: 166 RLWVSYFDGDPKAGLDPDLETRDIWLSL-GVPASRVLSFGPQENFWEMGDTGPCGPCTEI 224 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + GG+ + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 225 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQRHVDTGMGLERLVA 275 Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q G+ EG +RV+ DH+R+ S I Sbjct: 276 VLQGKHSTYDTDLFSPLLNAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYA-RLLGYTEPLMMHLLPALCTEMGSAYPELIQAKL 345 +DG+ P G VLRRI+RRA+ ++ +L + L+P + +G AYPEL + Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSVEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLY--DTHGLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L GLPLD+++ Sbjct: 396 QIANLVSEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLCGDLGLPLDMVEL 455 Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 +L +G+ AG++ + A EE + RAR G +W + G Q G Sbjct: 456 MLEEKGVQLDSAGLERL----AQEEAQHRARQAEPVKKQG----LWLDV-HALGELQRQG 506 Query: 460 YDLLRGSKFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTP 519 S L + + +++ + G V GQ+ ++ D+T Sbjct: 507 VPPTDDSPKYNYS---LQPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRTN 563 Query: 520 FYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDYQ 578 FYAE GGQ D G + G + V + + G F+ H V L+ + L +D Sbjct: 564 FYAEQGGQASDRGYLVRAGQEDVLFPVARAQVCGGFILHEAVAPECLQIGDQVQLHVDKA 623 Query: 579 NRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDN 638 R H+ATHLL+ AL LG Q GS ++P+ LR DVT P+T +L+++E+ Sbjct: 624 WRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLSPEQLRLDVTTQTPLTPEQLRAVENT 683 Query: 639 VNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSVEY 683 V + + Q+ V E+ + A + G + D V + Sbjct: 684 VQEAVGQDEAVYM-----EEVPLALTAQVPGLRSLDEVYPDPVRVVSVGVPVAHALDPAS 738 Query: 684 EDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDEKL 742 + S LC GTH+ TG + L I+ + + G R+ AITG++A ++ +GQ Sbjct: 739 QAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQSLAQ 798 Query: 743 KSLASFLKVSQGN 755 + A+ ++SQG+ Sbjct: 799 EVKAATERLSQGS 811 >gi|109071333|ref|XP_001099647.1| PREDICTED: probable alanyl-tRNA synthetase, mitochondrial [Macaca mulatta] Length = 985 Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust. Identities = 284/941 (30%), Positives = 452/941 (48%), Gaps = 108/941 (11%) Query: 11 FLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV-----YQAVTTV 64 FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P ++ V Sbjct: 46 FLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVDPRSEMAGFRRVANS 105 Query: 65 QKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLLTKEFDLDQR 123 QKCVRAGG+HNDL++VGR HHTFFEMLGN++FGG YFKE A +AW+LLT+ + + Sbjct: 106 QKCVRAGGRHNDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELLTQVYGIPTE 165 Query: 124 RLYITVYDEDEEA--------FKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEI 175 RL+++ +D D +A +W + G+ A +++ +NFW M TGPCGPC+EI Sbjct: 166 RLWVSYFDGDPKAGLEPDLETRDIWLSL-GVPATRVLSFGPQENFWEMGNTGPCGPCTEI 224 Query: 176 FFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDTGMGLERMAT 235 +D + GG+ + +E+WNLVFMQ ++ LP+ +DTGMGLER+ Sbjct: 225 HYD----LAGGV-----GAPQLVELWNLVFMQHNREADGSLQPLPQWHVDTGMGLERLVA 275 Query: 236 VLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVDHLRSSSFLI 286 VLQ K + YD DLF L+ A +Q G+ EG +RV+ DH+R+ S I Sbjct: 276 VLQGKHSTYDTDLFSPLLHAIQQGCRAPPYLGRVGVADEGRTDTAYRVVADHIRTLSVCI 335 Query: 287 ADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSAYPELIQAKL 345 +DG+ P G VLRRI+RRA+ ++ + P + L+P + +G AYPEL + Sbjct: 336 SDGVFPGMSGPPLVLRRILRRAVRFSMEILKAPPGFLGSLVPVVVETLGDAYPELQRNSA 395 Query: 346 LIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKLYDTH--GLPLDIMQD 403 I + ++ F +L+RG ++D L LG ++ +VA+ L + GLPLD+++ Sbjct: 396 QISNLVLEDEAAFLASLERGRRIIDRTLRTLGPSDMFPAEVAWSLSLSGDLGLPLDMVEL 455 Query: 404 ILCARGL----AGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIG 459 +L +G+ G++ ++ A + R GL W + G Q G Sbjct: 456 MLEEKGVQLDSTGLERLAQEAAQHQARQAEPVQKQGL--------WLDV-HALGELQHQG 506 Query: 460 YDLLRGS-KFMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQT 518 S K+ R + + +++ + G V GQ+ ++ D+T Sbjct: 507 VPPTDSSPKYNYSLRP----NGSYEFGTCEAQVLQLYTEDGTAVASVGKGQRCGLLLDRT 562 Query: 519 PFYAEAGGQLGDTGCAIGDGIRLQITDVQK-KAEGIFVHHAIVERGILRTEMSLVLTIDY 577 FYAE GGQ D G + G + V + + G F+ H V L+ + L +D Sbjct: 563 NFYAEQGGQASDRGYLVRVGQEDVLFPVARAQVCGGFILHEAVAPECLQIGDQVQLHVDK 622 Query: 578 QNRRQLSINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIED 637 R H+ATHLL+ AL LG Q GS + P+ LR DVT +T L+++E+ Sbjct: 623 AWRLACMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTALTPERLRAVEN 682 Query: 638 NVNDIIAQNLPVVTRIMNREDAIASGAAALLGTKYNDRV---------------RVVSVE 682 V + + Q+ PV E+ + A + G + D V + Sbjct: 683 TVQEAVQQDKPVYM-----EEVPLALTAQVPGLRCLDEVYPDPVRVVSVGVPVAHALDPA 737 Query: 683 YEDGGVHSSALCGGTHVSSTGEIMLLYIVSESSIRAGIRRIEAITGQRA-RSHLMGQDEK 741 + S LC GTH+ TG + L I+ + + G R+ AITG++A ++ +GQ+ Sbjct: 738 SQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAITGEQAQQARELGQNLA 797 Query: 742 LKSLASFLKVSQGNV-----------VGRVEE-----IWEEYRKLQLIH----------- 774 + A+ ++SQG+ +GR+ E + ++++ +L+ Sbjct: 798 QEVKAATERLSQGSRDVAEALRLSKDIGRLIEAVETSVMPQWQRRELLATLKMLQRRANT 857 Query: 775 AKRKLQLNVEDLSCHKIADVNFMSHIISEVDSKE----LKSVMDALQKKIQSGIIMLVGI 830 A RKLQ+ ++ + + +I + S E L V+ L ++ S ++L+ Sbjct: 858 AIRKLQMGQAAKKTQELLERHSKGPLIVDTVSAESLSVLVKVVRQLCEQAPSTSVLLLSP 917 Query: 831 SKEKKASVLIVVTEDLLDRFNAVDLARLSAKVLGGGGGGGR 871 K V + + F A A +GG G R Sbjct: 918 QSMGKVLCACQVAQGAMPTFTAEAWALAVCSHMGGKAWGSR 958 >gi|289758684|ref|ZP_06518062.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T85] gi|289714248|gb|EFD78260.1| alanyl-tRNA synthetase [Mycobacterium tuberculosis T85] Length = 702 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 256/668 (38%), Positives = 373/668 (55%), Gaps = 38/668 (5%) Query: 120 LDQRRLYITVYDEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAETGPCGPCSEIFFDQ 179 +D R++ TVY +D+EA +LW++++GL A++I R DN+WSM GPCGP SEI++D+ Sbjct: 1 MDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDR 60 Query: 180 G-ECIPGGLPGSSEEGERYIEIWNLVFMQFEQ---QNKQERFIL---PKMSIDTGMGLER 232 G E P G P SE+ RY+E+WNLVFMQ E+ K++ IL P+ +IDTGMG+ER Sbjct: 61 GPEFGPAGGPIVSED--RYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVER 118 Query: 233 MATVLQEKTNNYDIDLFKHLIQASEQVTGMKYE-GN--NIVNHRVIVDHLRSSSFLIADG 289 +A VLQ+ N Y+ DL + +I +V Y+ GN + V +R+I DH R+++ LI DG Sbjct: 119 IALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDG 178 Query: 290 ILPANEGRGYVLRRIMRRAMCYARLLGYTEPLMMHLLPALCTEMGSAYPELIQAKLLIEE 349 + P N+GRGYVLRR++RR + A+LLG ++ L+ + MG +YPEL+ I Sbjct: 179 VSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISR 238 Query: 350 TLRSEDERFGKTLDRGLVLLDGVLSHLGKD--EILNGDVAFKLYDTHGLPLDIMQDILCA 407 +E+ F +TL G L + V S K +L+G AF L+DT+G P+++ ++ Sbjct: 239 IAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAE 298 Query: 408 RGLAGIDIISFNQALEEQRSRARAHSLGLGSGTTEKIWFSLKEKYGATQFIGYDLLRGSK 467 GL +D I F + + EQR RA+A + + + GAT+F G+D LR S+ Sbjct: 299 TGLQ-VDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELR-SQ 356 Query: 468 FMKEDRKVLCQKPPIDLTNGVSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQ 527 V ++ P+ + +GV+ A GQ+VE+V D+TP YAE+GGQ Sbjct: 357 ARILGIFVDGKRVPV-VAHGVAG-------------GAGEGQRVELVLDRTPLYAESGGQ 402 Query: 528 LGDTGCAIGDG----IRLQITDVQKKAEGIFVHHAIVERGILRTEMSLVLTIDYQNRRQL 583 + D G G G R +TDVQK A+ ++VH VE G +++ +D RR Sbjct: 403 IADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGA 462 Query: 584 SINHSATHLLHHALSTILGSHVSQNGSCITPDGLRFDVTHSKPITSAELKSIEDNVNDII 643 + HS TH++H AL +LG + Q GS P LRFD P+T + +E+ N+ + Sbjct: 463 TQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAV 522 Query: 644 AQNLPVVTRIMNREDAIASGAAALLGTKYNDRVRVVSVEYEDGGVHSSALCGGTHVSSTG 703 + V T + A A GA AL G Y D VRVV E GG S LCGGTHVS+T Sbjct: 523 QADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVV----EMGGPFSLELCGGTHVSNTA 578 Query: 704 EIMLLYIVSESSIRAGIRRIEAITGQRARSHLMGQDEKLKSLASFLKVSQGNVVGRVEEI 763 +I + I+ ESSI +G+RR+EA G + HL + + LAS LKV V RV + Sbjct: 579 QIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANL 638 Query: 764 WEEYRKLQ 771 E R + Sbjct: 639 VERLRAAE 646 >gi|281345697|gb|EFB21281.1| hypothetical protein PANDA_002397 [Ailuropoda melanoleuca] Length = 974 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 289/945 (30%), Positives = 448/945 (47%), Gaps = 153/945 (16%) Query: 2 SNVSSIRTTFLEFFQ-KNGHELLPSSSLIPCNDPTLMFTNSGMVPFKNIFTGQEKPV--- 57 + ++R FL FF+ ++GH L+PS+S+ P DP+L+F N+GM FK IF G P Sbjct: 37 AQARAVRDAFLNFFRDRHGHRLVPSASVRPRGDPSLLFVNAGMNQFKPIFLGTVNPRSEM 96 Query: 58 --YQAVTTVQKCVRAGGKHNDLDNVGRTNRHHTFFEMLGNFSFGG-YFKERAIQLAWDLL 114 ++ V QKCVRAGG+H+DL++VGR HHTFFEMLGN++FGG YFKE A +AW+LL Sbjct: 97 AGFRRVANSQKCVRAGGRHSDLEDVGRDLSHHTFFEMLGNWAFGGEYFKEEACSMAWELL 156 Query: 115 TKEFDLDQRRLYITVY--------DEDEEAFKLWKKISGLSADKIIRITTNDNFWSMAET 166 T+ + + + RL+++ + D D E+ +W + G+ ++ +NFW M +T Sbjct: 157 TQVYGIPEDRLWVSYFGGDPKAGLDPDLESRDIWLSL-GVRDSHVLSFGPEENFWEMGDT 215 Query: 167 GPCGPCSEIFFDQGECIPGGLPGSSEEGERYIEIWNLVFMQFEQQNKQERFILPKMSIDT 226 GPCGPC+EI +D + G P + +E+WNLVF+Q ++ LP+ +DT Sbjct: 216 GPCGPCTEIHYDLAGRV--GAP-------QLVELWNLVFIQHNREADGSLQPLPQRHVDT 266 Query: 227 GMGLERMATVLQEKTNNYDIDLFKHLIQASEQ---------VTGMKYEGNNIVNHRVIVD 277 GMGLER+ VLQ + YD DLF L++A Q G EG + +RV+ D Sbjct: 267 GMGLERLVAVLQGTRSTYDTDLFSPLLKAIHQGCRAPPYLGRVGAADEGRTDMAYRVVAD 326 Query: 278 HLRSSSFLIADGILPANEGRGYVLRRIMRRAMCYARLLGYTEP-LMMHLLPALCTEMGSA 336 H+R+ S IADG+ P G VLRRI+RRA+ ++ + P + L+P + +G A Sbjct: 327 HIRTLSVCIADGVYPGMSGAPLVLRRILRRAVRFSTEVLRAPPGFLGSLVPVVVETLGDA 386 Query: 337 YPELIQAKLLIEETLRSEDERFGKTLDRGLVLLDGVLSHLGKDEILNGDVAFKL------ 390 YPEL + I + ++ F +L RG ++D L LG E+ +VA+ L Sbjct: 387 YPELQKNSAQIAHLVSEDEAAFLASLQRGRQIIDRTLRRLGPSELFPAEVAWSLSLAGNL 446 Query: 391 ----------YDTHGLPLDIMQDILCARGLAGIDIISFNQA---------LEEQRSRARA 431 + G+ LD AG+ ++ +A ++EQ + Sbjct: 447 GLPLDLLELMLEEKGVQLDS----------AGLARLAQEEAQHRSQQSEPVQEQGLQLNV 496 Query: 432 HSLG----LGSGTTEKIWFSLKEKYGATQFIGYDLLRGSKFMKEDRKVLCQKPPIDLTNG 487 H+LG G T+ S K Y GY+ F + +VL Sbjct: 497 HALGELQRRGVPPTDD---SPKYNYSLRPSGGYE------FSACEAQVL----------- 536 Query: 488 VSSIVKAIVQQGEIVEEAVSGQKVEVVFDQTPFYAEAGGQLGDTGCAIGDGIRLQITDV- 546